Citrus Sinensis ID: 043347

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-----
Protein Sequence
MELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL
Secondary Structure (PSIPRED)
ccccccccccEEEcccccccccccHHHHcccccccEEEccccEEEEcccHHHHHccccccEEEccccEEEccccccccccccccEEEEEccccccccccccccccccccccccccEEEEcccHHHHcccccccEEcccccccccccHHHHcccccccccccccccEEEcccccccccccccccEEEcccEEEEcccccccccccccEEEccccEEEEEccccccccccccEEEcccccccccccccccccccccccccccEEEccccccccccccHHHccccccccEEccccEEEEcccccccccccccccccccccccccccHHHHccccccEEccccccccccccHHHHccccccEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEcccccccccccHHHccHHHHHHHEEcccccccccccHHHHHHcccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEccccEEEccccHHccHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccccccccHHHccccccEEEEcccccccccccHHHccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEccc
Coil and Loop (DISEMBL)
MELGNLAELEVLVLNnnlltgtipasifnlssistgldfsnnsltgsfpddmceglprlkgLYVSYnqfkgpipnnlwhckelsrvslsfnqftgriprdlgnstkLKLLYLSFNNLIGEIPQEIGSLRNLEILRIdqnnlvgfipdtifnMSTLKTLSLLNNtlsgnlpsskkliglpnleglilglnnfsgsipsfffNASKLYYLELAYNSFSGLIPKALGQLrnlerlglqsnyltSSTSELMSLFSALVNCKSLKVIVlaenpvdgvlpssignlsVSVEEIYMYKCnihgripkeignlinltklslgynnlsgslpitLGRLkklqgldlqnnkfegpiphefchfsRLYKFYLnrnklsgsipsclgdlnslrilsl
Flexible Loop (DISEMBL)
MELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTgriprdlgnsTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAenpvdgvlpssiGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSgsipsclgdlnslrilsl
Low Complexity Region (SEG)
MElgnlaelevlvlnnnlltgtIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMstlktlsllnntlsgnlpssKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKlslgynnlsgslPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL
Disordered region (IsUnstruct)
*****LAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSL*****
Disordered Region (DISOPRED)
MELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL
Disordered Region (DISEMBL)
MELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL
Disordered Region (DISPRO)
**LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	385	2.2.26 [Sep-21-2011]
C0LGT6	1031	LRR receptor-like serine/	yes	no	0.919	0.343	0.370	1e-51
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.966	0.312	0.361	6e-51
Q9LHP4	1141	Receptor-like protein kin	no	no	0.968	0.326	0.363	8e-51
P93194	1109	Receptor-like protein kin	N/A	no	0.966	0.335	0.371	4e-48
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.966	0.297	0.369	9e-48
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.945	0.318	0.341	2e-47
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.948	0.361	0.363	3e-47
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.966	0.337	0.361	1e-46
Q9FL28	1173	LRR receptor-like serine/	no	no	0.974	0.319	0.328	2e-46
Q9C9H7	847	Receptor-like protein 12	no	no	0.924	0.420	0.362	1e-45

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  204 bits (519), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 141/381 (37%), Positives = 210/381 (55%), Gaps = 27/381 (7%)

Query: 19  LTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLW 78
           LTG I  SI NLS +   L+ ++NS   + P  +   L RL+ L +SYN  +G IP++L 
Sbjct: 85  LTGVISPSIGNLSFLRL-LNLADNSFGSTIPQKVGR-LFRLQYLNMSYNLLEGRIPSSLS 142

Query: 79  HCKELSRVSLSFNQF------------------------TGRIPRDLGNSTKLKLLYLSF 114
           +C  LS V LS N                          TG  P  LGN T L+ L  ++
Sbjct: 143 NCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAY 202

Query: 115 NNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKK 174
           N + GEIP E+  L  +   +I  N+  G  P  ++N+S+L++LSL +N+ SGNL +   
Sbjct: 203 NQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFG 262

Query: 175 LIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGL 234
            +       L+LG N F+G+IP    N S L   +++ N  SG IP + G+LRNL  LG+
Sbjct: 263 YLLPNLRR-LLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGI 321

Query: 235 QSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNI 294
           ++N L +++S  +    A+ NC  L+ + +  N + G LP+SI NLS ++  +++ +  I
Sbjct: 322 RNNSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLI 381

Query: 295 HGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFS 354
            G IP +IGNL++L +LSL  N LSG LP++ G+L  LQ +DL +N   G IP  F + +
Sbjct: 382 SGTIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMT 441

Query: 355 RLYKFYLNRNKLSGSIPSCLG 375
           RL K +LN N   G IP  LG
Sbjct: 442 RLQKLHLNSNSFHGRIPQSLG 462

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  201 bits (512), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 143/396 (36%), Positives = 217/396 (54%), Gaps = 24/396 (6%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           EL     LE + L+ NLL+GTI   +F+  S    L  +NN + GS P+D+ + LP L  
Sbjct: 372 ELCGSGSLEAIDLSGNLLSGTI-EEVFDGCSSLGELLLTNNQINGSIPEDLWK-LP-LMA 428

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L +  N F G IP +LW    L   + S+N+  G +P ++GN+  LK L LS N L GEI
Sbjct: 429 LDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEI 488

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
           P+EIG L +L +L ++ N   G IP  + + ++L TL L +N L G +P   K+  L  L
Sbjct: 489 PREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPD--KITALAQL 546

Query: 182 EGLILGLNNFSGSI---PSFFFNASKLYYL---------ELAYNSFSGLIPKALGQLRNL 229
           + L+L  NN SGSI   PS +F+  ++  L         +L+YN  SG IP+ LG+   L
Sbjct: 547 QCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVL 606

Query: 230 ERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYM 289
             + L +N+L   + E+ +  S L N   L ++ L+ N + G +P  +GN S+ ++ + +
Sbjct: 607 VEISLSNNHL---SGEIPASLSRLTN---LTILDLSGNALTGSIPKEMGN-SLKLQGLNL 659

Query: 290 YKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHE 349
               ++G IP+  G L +L KL+L  N L G +P +LG LK+L  +DL  N   G +  E
Sbjct: 660 ANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSE 719

Query: 350 FCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
                +L   Y+ +NK +G IPS LG+L  L  L +
Sbjct: 720 LSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDV 755

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  201 bits (511), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 140/385 (36%), Positives = 214/385 (55%), Gaps = 12/385 (3%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           ++   ++L+ L+L +NLLTG+IP  +  LS +       N  ++G  P ++ +    L  
Sbjct: 172 DISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIGD-CSNLTV 230

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L ++     G +P++L   K+L  +S+     +G IP DLGN ++L  L+L  N+L G I
Sbjct: 231 LGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSI 290

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIG-LPN 180
           P+EIG L  LE L + QN+LVG IP+ I N S LK + L  N LSG++PSS   IG L  
Sbjct: 291 PREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSS---IGRLSF 347

Query: 181 LEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLT 240
           LE  ++  N FSGSIP+   N S L  L+L  N  SGLIP  LG L  L      SN L 
Sbjct: 348 LEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLE 407

Query: 241 SSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPK 300
                  S+   L +C  L+ + L+ N + G +PS +  L  ++ ++ +   ++ G IP+
Sbjct: 408 G------SIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLR-NLTKLLLISNSLSGFIPQ 460

Query: 301 EIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFY 360
           EIGN  +L +L LG+N ++G +P  +G LKK+  LD  +N+  G +P E    S L    
Sbjct: 461 EIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMID 520

Query: 361 LNRNKLSGSIPSCLGDLNSLRILSL 385
           L+ N L GS+P+ +  L+ L++L +
Sbjct: 521 LSNNSLEGSLPNPVSSLSGLQVLDV 545

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  192 bits (487), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 151/406 (37%), Positives = 210/406 (51%), Gaps = 34/406 (8%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDM--CE------ 54
           LGN+  L+ L LN+N L GT+P ++ NL ++   LD  NNSL G+ P D   C+      
Sbjct: 208 LGNITTLQELYLNDNNLVGTLPVTLNNLENL-VYLDVRNNSLVGAIPLDFVSCKQIDTIS 266

Query: 55  --------GLPRLKGLYVSYNQF-------KGPIPNNLWHCKELSRVSLSFNQFTGRIPR 99
                   GLP   G   S  +F        GPIP+      +L  + L+ N F+GRIP 
Sbjct: 267 LSNNQFTGGLPPGLGNCTSLREFGAFSCALSGPIPSCFGQLTKLDTLYLAGNHFSGRIPP 326

Query: 100 DLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLS 159
           +LG    +  L L  N L GEIP E+G L  L+ L +  NNL G +P +I+ + +L++L 
Sbjct: 327 ELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEVPLSIWKIQSLQSLQ 386

Query: 160 LLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLI 219
           L  N LSG LP    +  L  L  L L  N+F+G IP      S L  L+L  N F+G I
Sbjct: 387 LYQNNLSGELPV--DMTELKQLVSLALYENHFTGVIPQDLGANSSLEVLDLTRNMFTGHI 444

Query: 220 PKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGN 279
           P  L   + L+RL L  NYL  S        S L  C +L+ ++L EN + G LP  +  
Sbjct: 445 PPNLCSQKKLKRLLLGYNYLEGSVP------SDLGGCSTLERLILEENNLRGGLPDFVEK 498

Query: 280 LSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQN 339
            ++   +  +   N  G IP  +GNL N+T + L  N LSGS+P  LG L KL+ L+L +
Sbjct: 499 QNLLFFD--LSGNNFTGPIPPSLGNLKNVTAIYLSSNQLSGSIPPELGSLVKLEHLNLSH 556

Query: 340 NKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           N  +G +P E  +  +L +   + N L+GSIPS LG L  L  LSL
Sbjct: 557 NILKGILPSELSNCHKLSELDASHNLLNGSIPSTLGSLTELTKLSL 602

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  191 bits (485), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 203/384 (52%), Gaps = 12/384 (3%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
           L NL  LE L L +N LTG IP+ + +L +I + L   +N L G  P+ +   L  L+ L
Sbjct: 115 LSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRS-LRIGDNELVGDIPETLG-NLVNLQML 172

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
            ++  +  GPIP+ L     +  + L  N   G IP +LGN + L +   + N L G IP
Sbjct: 173 ALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIP 232

Query: 123 QEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLE 182
            E+G L NLEIL +  N+L G IP  +  MS L+ LSL+ N L G +P  K L  L NL+
Sbjct: 233 AELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIP--KSLADLGNLQ 290

Query: 183 GLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKAL-GQLRNLERLGLQSNYLTS 241
            L L  NN +G IP  F+N S+L  L LA N  SG +PK++     NLE+L L    L+ 
Sbjct: 291 TLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSG 350

Query: 242 STSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKE 301
                +S       C+SLK + L+ N + G +P ++  L V + ++Y++   + G +   
Sbjct: 351 EIPVELS------KCQSLKQLDLSNNSLAGSIPEALFEL-VELTDLYLHNNTLEGTLSPS 403

Query: 302 IGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYL 361
           I NL NL  L L +NNL G LP  +  L+KL+ L L  N+F G IP E  + + L    +
Sbjct: 404 ISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDM 463

Query: 362 NRNKLSGSIPSCLGDLNSLRILSL 385
             N   G IP  +G L  L +L L
Sbjct: 464 FGNHFEGEIPPSIGRLKELNLLHL 487

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  190 bits (483), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 137/401 (34%), Positives = 203/401 (50%), Gaps = 37/401 (9%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
           L +   L++L+L+NNL++G  P SI    S+    DFS+N  +G  P D+C G   L+ L
Sbjct: 322 LRSFGSLQILLLSNNLISGDFPTSISACKSLRIA-DFSSNRFSGVIPPDLCPGAASLEEL 380

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
            +  N   G IP  +  C EL  + LS N   G IP ++GN  KL+     +NN+ GEIP
Sbjct: 381 RLPDNLVTGEIPPAISQCSELRTIDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIP 440

Query: 123 QEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLE 182
            EIG L+NL+ L ++ N L G IP   FN S ++ +S  +N L+G +P  K    L  L 
Sbjct: 441 PEIGKLQNLKDLILNNNQLTGEIPPEFFNCSNIEWVSFTSNRLTGEVP--KDFGILSRLA 498

Query: 183 GLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSS 242
            L LG NNF+G IP      + L +L+L  N  +G IP  LG+    + L   S  L+ +
Sbjct: 499 VLQLGNNNFTGEIPPELGKCTTLVWLDLNTNHLTGEIPPRLGRQPGSKAL---SGLLSGN 555

Query: 243 TSELMSLFSALVN-CKSLKVIVLAENPVDGVLPS----------------------SIGN 279
           T   M+    + N CK +  +V       G+ P                       S+  
Sbjct: 556 T---MAFVRNVGNSCKGVGGLV----EFSGIRPERLLQIPSLKSCDFTRMYSGPILSLFT 608

Query: 280 LSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQN 339
              ++E + +    + G+IP EIG +I L  L L +N LSG +P T+G+LK L   D  +
Sbjct: 609 RYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASD 668

Query: 340 NKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSL 380
           N+ +G IP  F + S L +  L+ N+L+G IP   G L++L
Sbjct: 669 NRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQ-RGQLSTL 708

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  189 bits (480), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 143/393 (36%), Positives = 201/393 (51%), Gaps = 28/393 (7%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
           +GNL+ L  L L  N   GTIP  +  LS +   LD   N L G  P  +     RL  L
Sbjct: 86  IGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEY-LDMGINYLRGPIPLGLYN-CSRLLNL 143

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
            +  N+  G +P+ L     L +++L  N   G++P  LGN T L+ L LS NNL GEIP
Sbjct: 144 RLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIP 203

Query: 123 QEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLE 182
            ++  L  +  L++  NN  G  P  ++N+S+LK L +  N  SG L     ++ LPNL 
Sbjct: 204 SDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGIL-LPNLL 262

Query: 183 GLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSS 242
              +G N F+GSIP+   N S L  L +  N+ +G IP   G + NL+ L L +N L S 
Sbjct: 263 SFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIP-TFGNVPNLKLLFLHTNSLGSD 321

Query: 243 TSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI 302
           +S  +   ++L NC  L+ + +  N + G LP SI NLS  +  + +    I G IP +I
Sbjct: 322 SSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDI 381

Query: 303 GNLINLTKLSLGYNNLSGSLPITLGRL------------------------KKLQGLDLQ 338
           GNLINL KL L  N LSG LP +LG+L                          L+ LDL 
Sbjct: 382 GNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLS 441

Query: 339 NNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIP 371
           NN FEG +P    + S L + ++  NKL+G+IP
Sbjct: 442 NNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIP 474

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  187 bits (474), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/385 (36%), Positives = 196/385 (50%), Gaps = 13/385 (3%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           +L  L  L  L+L  N L+G IP S+ N+S +   L    N  TGS P ++ + L ++K 
Sbjct: 230 QLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEV-LALHENYFTGSIPREIGK-LTKMKR 287

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           LY+  NQ  G IP  + +  + + +  S NQ TG IP++ G+   LKLL+L  N L+G I
Sbjct: 288 LYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPI 347

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGL-PN 180
           P+E+G L  LE L +  N L G IP  +  +  L  L L +N L G +P    LIG   N
Sbjct: 348 PRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPP---LIGFYSN 404

Query: 181 LEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLT 240
              L +  N+ SG IP+ F     L  L L  N  SG IP+ L   ++L +L L  N LT
Sbjct: 405 FSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLT 464

Query: 241 SSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPK 300
            S      L   L N ++L  + L +N + G + + +G L  ++E + +   N  G IP 
Sbjct: 465 GS------LPIELFNLQNLTALELHQNWLSGNISADLGKLK-NLERLRLANNNFTGEIPP 517

Query: 301 EIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFY 360
           EIGNL  +   ++  N L+G +P  LG    +Q LDL  NKF G I  E      L    
Sbjct: 518 EIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILR 577

Query: 361 LNRNKLSGSIPSCLGDLNSLRILSL 385
           L+ N+L+G IP   GDL  L  L L
Sbjct: 578 LSDNRLTGEIPHSFGDLTRLMELQL 602

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 141/429 (32%), Positives = 211/429 (49%), Gaps = 54/429 (12%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCE------- 54
           E+G L EL  L+L  N  +G+IP+ I+ L +I   LD  NN L+G  P+++C+       
Sbjct: 115 EIGKLTELNQLILYLNYFSGSIPSGIWELKNIFY-LDLRNNLLSGDVPEEICKTSSLVLI 173

Query: 55  ----------------GLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIP 98
                            L  L+    + N   G IP ++     L+ + LS NQ TG+IP
Sbjct: 174 GFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIP 233

Query: 99  RDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTL 158
           RD GN   L+ L L+ N L G+IP EIG+  +L  L +  N L G IP  + N+  L+ L
Sbjct: 234 RDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQAL 293

Query: 159 SLLNNTLSGNLPSS--------------KKLIG--------LPNLEGLILGLNNFSGSIP 196
            +  N L+ ++PSS                L+G        L +LE L L  NNF+G  P
Sbjct: 294 RIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFP 353

Query: 197 SFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNC 256
               N   L  L + +N+ SG +P  LG L NL  L    N LT        + S++ NC
Sbjct: 354 QSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTG------PIPSSISNC 407

Query: 257 KSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYN 316
             LK++ L+ N + G +P   G ++++   I + + +  G IP +I N  NL  LS+  N
Sbjct: 408 TGLKLLDLSHNQMTGEIPRGFGRMNLTF--ISIGRNHFTGEIPDDIFNCSNLETLSVADN 465

Query: 317 NLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGD 376
           NL+G+L   +G+L+KL+ L +  N   GPIP E  +   L   YL+ N  +G IP  + +
Sbjct: 466 NLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSN 525

Query: 377 LNSLRILSL 385
           L  L+ L +
Sbjct: 526 LTLLQGLRM 534

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  184 bits (467), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 204/392 (52%), Gaps = 36/392 (9%)

Query: 6   LAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVS 65
           L  L  L L N  L G IP+S+ NLS + T ++   N   G  P  +   L +L+ L ++
Sbjct: 109 LQYLRHLDLTNCNLYGEIPSSLGNLSHL-TLVNLYFNKFVGEIPASIG-NLNQLRHLILA 166

Query: 66  YNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI 125
            N   G IP++L +   L  + L  N+  G+IP  +G+  +L+ L L+ NNLIGEIP  +
Sbjct: 167 NNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSL 226

Query: 126 GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLI 185
           G+L NL  L +  N LVG +P +I N+  L+ +S  NN+LSGN+P S     L  L   +
Sbjct: 227 GNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPIS--FANLTKLSIFV 284

Query: 186 LGLNNFSGSIP---SFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSS 242
           L  NNF+ + P   S F N   L Y +++YNSFSG  PK+L  + +LE + LQ N  T  
Sbjct: 285 LSSNNFTSTFPFDMSIFHN---LEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGP 341

Query: 243 TSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI 302
                  F+   +   L+ ++L  N + G +P SI  L +++EE+ +   N  G IP  I
Sbjct: 342 IE-----FANTSSSTKLQDLILGRNRLHGPIPESISRL-LNLEELDISHNNFTGAIPPTI 395

Query: 303 GNLINLTKLSLGYNNLSGSLPITLGRLKKL--------------------QGLDLQNNKF 342
             L+NL  L L  NNL G +P  L RL  +                    + LDL +N F
Sbjct: 396 SKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSF 455

Query: 343 EGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCL 374
           +GPIP+  C  S L    L+ N  SGSIPSC+
Sbjct: 456 QGPIPYMICKLSSLGFLDLSNNLFSGSIPSCI 487

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
359483683	1228	PREDICTED: LRR receptor-like serine/thre	0.984	0.308	0.507	2e-88
359483681	871	PREDICTED: LRR receptor-like serine/thre	0.987	0.436	0.501	7e-88
359483677	1229	PREDICTED: LRR receptor-like serine/thre	0.987	0.309	0.478	9e-87
147852480	1229	hypothetical protein VITISV_039533 [Viti	0.987	0.309	0.483	9e-87
147776333	1205	hypothetical protein VITISV_000078 [Viti	0.987	0.315	0.478	4e-86
359483675	1250	PREDICTED: LRR receptor-like serine/thre	0.989	0.304	0.5	2e-85
147769371	1241	hypothetical protein VITISV_010511 [Viti	0.987	0.306	0.472	7e-85
255572272	1089	serine-threonine protein kinase, plant-t	0.976	0.345	0.485	2e-83
449500845	982	PREDICTED: probable LRR receptor-like se	0.992	0.389	0.468	2e-82
449465016	1092	PREDICTED: probable LRR receptor-like se	0.992	0.349	0.466	9e-82

>gi|359483683|ref|XP_003633001.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 197/388 (50%), Positives = 261/388 (67%), Gaps = 9/388 (2%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           E+GNL+ L +L L ++ + G IPA IFN+SS+   +DF+NNSL+G  P D+C+ LP L+G
Sbjct: 334 EIGNLSNLNILHLASSGINGPIPAEIFNISSLHR-IDFTNNSLSGGLPMDICKHLPNLQG 392

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           LY+S N   G +P  L+ C EL  +SLS N+FTG IPRD+GN +KL+ +YLS N+LIG I
Sbjct: 393 LYLSQNHLSGQLPTTLFLCGELLLLSLSINKFTGSIPRDIGNLSKLEKIYLSTNSLIGSI 452

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIG--LP 179
           P   G+L+ L+ L++  NNL G IP+ IFN+S L+TL+L  N LSG LPSS   IG  LP
Sbjct: 453 PTSFGNLKALKFLQLGSNNLTGTIPEDIFNISKLQTLALAQNHLSGGLPSS---IGTWLP 509

Query: 180 NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL 239
           +LEGL +G N FSG+IP    N SKL  L ++ N F+G +PK L  LR LE L L  N L
Sbjct: 510 DLEGLFIGGNEFSGTIPVSISNMSKLIRLHISDNYFTGNVPKDLSNLRKLEVLNLAGNQL 569

Query: 240 TSS--TSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGR 297
           T    TSE +   ++L NCK L+ + +  NP+ G LP+S+GNLSV++E      C+  G 
Sbjct: 570 TDEHLTSE-VGFLTSLTNCKFLRTLWIDYNPLKGTLPNSLGNLSVALESFTASACHFRGT 628

Query: 298 IPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLY 357
           IP  IGNL NL  L LG N+L+GS+P TLG L+KLQ L +  N+ +G IP++ CH   L 
Sbjct: 629 IPTGIGNLTNLIWLDLGANDLTGSIPTTLGHLQKLQRLYIAGNRIQGSIPNDLCHLKNLG 688

Query: 358 KFYLNRNKLSGSIPSCLGDLNSLRILSL 385
             +L+ NKLSGSIPSC GDL +LR LSL
Sbjct: 689 YLHLSSNKLSGSIPSCFGDLPALRELSL 716

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483681|ref|XP_002268458.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  330 bits (846), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 194/387 (50%), Positives = 260/387 (67%), Gaps = 7/387 (1%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           E+GNL+ L +L L ++ + G IPA IFN+SS+   +DF+NNSL+G  P D+C+ LP L+G
Sbjct: 165 EIGNLSNLNILHLASSGINGPIPAEIFNISSLHR-IDFTNNSLSGGLPMDICKHLPNLQG 223

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           LY+S N   G +P  L+ C EL  +SLS N+FTG IPRD+GN +KL+ +YLS N+LIG I
Sbjct: 224 LYLSQNHLSGQLPTTLFLCGELLLLSLSINKFTGSIPRDIGNLSKLEKIYLSTNSLIGSI 283

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIG--LP 179
           P   G+L+ L+ L++  NNL G IP+ IFN+S L+TL+L  N LSG LPSS   IG  LP
Sbjct: 284 PTSFGNLKALKFLQLGSNNLTGTIPEDIFNISKLQTLALAQNHLSGGLPSS---IGTWLP 340

Query: 180 NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL 239
           +LEGL +G N FSG+IP    N SKL  L ++ N F+G +PK L  LR LE L L  N L
Sbjct: 341 DLEGLFIGGNEFSGTIPVSISNMSKLIRLHISDNYFTGNMPKDLSNLRKLEVLNLAGNQL 400

Query: 240 TSST-SELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRI 298
           T    +  +   ++L NCK L+ + +  NP+ G LP+S+GNLSV++E      C+  G I
Sbjct: 401 TDEHLTSKVGFLTSLTNCKFLRTLWIDYNPLRGTLPNSLGNLSVALESFTASACHFRGTI 460

Query: 299 PKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYK 358
           P  IGNL NL  L LG N+L+GS+P TLG+L+KLQ L +  N+ +G IP++ CH   L  
Sbjct: 461 PTGIGNLTNLIWLDLGANDLTGSIPTTLGQLQKLQRLYIAGNRIQGSIPNDLCHLKNLGY 520

Query: 359 FYLNRNKLSGSIPSCLGDLNSLRILSL 385
            +L+ NKLSGSIPSC GDL +LR LSL
Sbjct: 521 LHLSSNKLSGSIPSCFGDLPALRELSL 547

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483677|ref|XP_003633000.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  326 bits (836), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 185/387 (47%), Positives = 253/387 (65%), Gaps = 7/387 (1%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           E+GNL+ L +L L++N ++G IPA IFN+SS+   + F++NSL+GS P D+C+ LP L+G
Sbjct: 335 EIGNLSNLNILQLSSNGISGPIPAEIFNVSSLQV-IAFTDNSLSGSLPKDICKHLPNLQG 393

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L +S N   G +P  L  C EL  +SLSFN+F G IP+++GN +KL+ +YL  N+LIG I
Sbjct: 394 LSLSQNHLSGQLPTTLSLCGELLFLSLSFNKFRGSIPKEIGNLSKLEKIYLGTNSLIGSI 453

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIG--LP 179
           P   G+L+ L+ L +  NNL G +P+ IFN+S L++L+++ N LSG+LPSS   IG  L 
Sbjct: 454 PTSFGNLKALKFLNLGINNLTGTVPEAIFNISKLQSLAMVKNHLSGSLPSS---IGTWLS 510

Query: 180 NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL 239
           +LEGL +  N FSG IP    N SKL  L L+ NSF+G +PK LG L  L+ L L  N L
Sbjct: 511 DLEGLFIAGNEFSGIIPMSISNMSKLTVLGLSANSFTGNVPKDLGNLTKLKVLDLAGNQL 570

Query: 240 TSS-TSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRI 298
           T    +  +   ++L NCK LK + +  NP  G LP+S+GNL +++E      C   G I
Sbjct: 571 TDEHVASEVGFLTSLTNCKFLKNLWIGNNPFKGTLPNSLGNLPIALESFIASACQFRGTI 630

Query: 299 PKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYK 358
           P  IGNL NL  L LG N+L+GS+P TLGRLKKLQ L +  N+  G IP++ CH   L  
Sbjct: 631 PTRIGNLTNLIWLDLGANDLTGSIPTTLGRLKKLQKLHIVGNRLRGSIPNDLCHLKNLGY 690

Query: 359 FYLNRNKLSGSIPSCLGDLNSLRILSL 385
            +L+ NKLSGSIPSC GDL +L+ L L
Sbjct: 691 LHLSSNKLSGSIPSCFGDLPALQELFL 717

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852480|emb|CAN78527.1| hypothetical protein VITISV_039533 [Vitis vinifera]

 Score =  326 bits (836), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 187/387 (48%), Positives = 253/387 (65%), Gaps = 7/387 (1%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           E+GNL+ L +L L +N ++G IPA IFN+SS+  G+ FSNNSL+GS P D+C+ LP L+ 
Sbjct: 335 EIGNLSNLNILQLGSNGISGPIPAEIFNISSLQ-GIGFSNNSLSGSLPMDICKHLPNLQW 393

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L ++ N   G +P  L  C+EL  +SLSFN+F G IPR++GN +KL+ + LS N+L+G I
Sbjct: 394 LDLALNHLSGQLPTTLSLCRELLVLSLSFNKFRGSIPREIGNLSKLEWIDLSSNSLVGSI 453

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIG--LP 179
           P   G+L  L+ L +  NNL G +P+ IFN+S L++L++  N LSG+LPSS   IG  LP
Sbjct: 454 PTSFGNLMALKFLNLGINNLTGTVPEAIFNISKLQSLAMAINHLSGSLPSS---IGTWLP 510

Query: 180 NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL 239
           +LEGL +G N FSG IP    N SKL  L+++ NSF G +PK LG L  LE L L  N  
Sbjct: 511 DLEGLFIGGNEFSGIIPVSISNMSKLTQLDVSRNSFIGNVPKDLGNLTKLEVLNLAGNQF 570

Query: 240 TSST-SELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRI 298
           T+   +  +S  ++L NCK LK + +  NP  G LP+S+GNL +++E      C   G I
Sbjct: 571 TNEHLASEVSFLTSLTNCKFLKNLWIGNNPFKGTLPNSLGNLPIALESFIASACQFRGTI 630

Query: 299 PKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYK 358
           P  IGNL NL  L LG N+L+GS+P  LGRLKKLQ L +  N+  G IP++ CH   L  
Sbjct: 631 PTGIGNLTNLIWLDLGANDLTGSIPTILGRLKKLQRLHIAGNRLRGSIPNDLCHLKNLGY 690

Query: 359 FYLNRNKLSGSIPSCLGDLNSLRILSL 385
            +L+ NKLSGSIPSC GDL +L+ L L
Sbjct: 691 LHLSSNKLSGSIPSCFGDLPALQELFL 717

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776333|emb|CAN72034.1| hypothetical protein VITISV_000078 [Vitis vinifera]

 Score =  324 bits (831), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 185/387 (47%), Positives = 252/387 (65%), Gaps = 7/387 (1%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           E+GNL+ L +L L +N ++G IPA IFN+SS+   +DF+NNSL+GS P  +C+ LP L+G
Sbjct: 311 EIGNLSNLNILQLGSNGISGPIPAEIFNISSLQV-IDFTNNSLSGSLPMGICKHLPNLQG 369

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           LY++ N   G +P  L  C EL  +SLSFN+F G IPR++GN +KL+ + L  N+L+G I
Sbjct: 370 LYLAQNHLSGQLPTTLSLCGELLFLSLSFNKFRGSIPREIGNLSKLEHIDLRSNSLVGSI 429

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIG--LP 179
           P   G+L+ L+ L +  N L G +P+ IFN+S L+ L+L+ N LSG+LPSS   IG  LP
Sbjct: 430 PTSFGNLKALKFLNLGINFLTGTVPEAIFNISELQNLALVQNHLSGSLPSS---IGTWLP 486

Query: 180 NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL 239
           +LEGL +G N FSG+IP    N SKL  L L+ NSF+G +PK L  L  L+ L L  N L
Sbjct: 487 DLEGLYIGANEFSGTIPMSISNMSKLTVLSLSDNSFTGNVPKDLCNLTKLKFLNLAHNQL 546

Query: 240 TSST-SELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRI 298
           T    +  +   ++L NCK L+ + +  NP+ G LP+S+GNL +++E    Y C   G I
Sbjct: 547 TDEHLASGVGFLTSLTNCKFLRYLWIGYNPLKGTLPNSLGNLPIALESFTAYACQFRGTI 606

Query: 299 PKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYK 358
           P  IGNL NL  L LG N+L+GS+P TLGRL+KLQ L +  N+  G IP++ CH   L  
Sbjct: 607 PTGIGNLTNLIWLDLGANDLTGSIPTTLGRLQKLQRLHIAGNRIRGSIPNDLCHLKNLGY 666

Query: 359 FYLNRNKLSGSIPSCLGDLNSLRILSL 385
             L+ NKLSGS PSC GDL +LR L L
Sbjct: 667 LGLSSNKLSGSTPSCFGDLLALRELFL 693

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483675|ref|XP_003632999.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 193/386 (50%), Positives = 257/386 (66%), Gaps = 5/386 (1%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           E+G L+ L +L L ++ + G IPA IFN+SS+   +DF+NNSL+G  P D+C+ LP L+G
Sbjct: 334 EIGILSNLNILHLASSGINGPIPAEIFNISSLHR-IDFTNNSLSGGLPMDICKHLPNLQG 392

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           LY+S N   G +P  L+ C EL  +SLS N+FT  IPRD+GN +KLK +YLS N+LIG I
Sbjct: 393 LYLSQNHLSGQLPTTLFLCGELLLLSLSINKFTRSIPRDIGNLSKLKKIYLSTNSLIGSI 452

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
           P   G+L+ L+ L++  NNL+G IP+ IFN+S L+TL+L  N LSG LPSS     LP+L
Sbjct: 453 PTSFGNLKALKFLQLGSNNLIGTIPEDIFNISKLQTLALAQNHLSGGLPSSIS-TWLPDL 511

Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241
           EGL +G N FSG+IP    N SKL  L ++ N F G +PK L  LR LE L L  N LT 
Sbjct: 512 EGLFIGGNEFSGTIPVSISNMSKLIRLHISDNYFIGNVPKDLSNLRKLEVLNLAGNQLTD 571

Query: 242 S--TSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIP 299
              TSE +   ++L NCK L+ + +  NP+ G LP+S+GNLSV++E      C+  G IP
Sbjct: 572 EHLTSE-VGFLTSLTNCKFLRTLWIDYNPLKGTLPNSLGNLSVALESFTASACHFRGTIP 630

Query: 300 KEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKF 359
             IGNL NL  L LG N+L+GS+P TLG+L+KLQ L +  N+ +G IP++  H   L   
Sbjct: 631 TGIGNLTNLIWLDLGANDLTGSIPTTLGQLQKLQRLYIAGNRIQGSIPNDLFHLKNLGYL 690

Query: 360 YLNRNKLSGSIPSCLGDLNSLRILSL 385
           +L+ NKLSGSIPSC GDL +LR LSL
Sbjct: 691 HLSSNKLSGSIPSCFGDLPALRELSL 716

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769371|emb|CAN72496.1| hypothetical protein VITISV_010511 [Vitis vinifera]

 Score =  320 bits (820), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 183/387 (47%), Positives = 251/387 (64%), Gaps = 7/387 (1%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           E+GNL+ L +L L +N ++G IPA IFN+SS+   +DFSNNSL+GS P D+C+ LP L+G
Sbjct: 347 EIGNLSNLNILQLGSNGISGPIPAEIFNISSLQI-IDFSNNSLSGSLPMDICKHLPNLQG 405

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           LY+  N   G +P  L  C EL  +SL+ N+F G IPR++GN +KL+ + L  N+L+G I
Sbjct: 406 LYLLQNHLSGQLPTTLSLCGELLYLSLAVNKFRGSIPREIGNLSKLEDISLRSNSLVGSI 465

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIG--LP 179
           P   G+L  L+ L +  N L G +P+ IFN+S L+ L L+ N LSG+LP S   IG  LP
Sbjct: 466 PTSFGNLMALKYLDLGMNFLTGTVPEAIFNISELQILVLVQNHLSGSLPPS---IGTWLP 522

Query: 180 NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL 239
           +LEGL +G N FSG+IP    N SKL  L++  NSF+G +PK LG L  LE L L +N L
Sbjct: 523 DLEGLYIGSNKFSGTIPMSISNMSKLIQLQVWDNSFTGNVPKDLGNLTKLEVLNLAANQL 582

Query: 240 TSST-SELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRI 298
           T+   +  +   ++L NCK L+ + + +NP  G LP+S+GNL +++E      C   G I
Sbjct: 583 TNEHLASGVGFLTSLTNCKFLRHLWIDDNPFKGTLPNSLGNLPIALESFTASACQFRGTI 642

Query: 299 PKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYK 358
           P  IGNL NL +L LG N+L+ S+P TLGRL+KLQ L +  N+  G IP++ CH   L  
Sbjct: 643 PTGIGNLTNLIELDLGANDLTRSIPTTLGRLQKLQRLHIAGNRIRGSIPNDLCHLKNLGY 702

Query: 359 FYLNRNKLSGSIPSCLGDLNSLRILSL 385
            +L  NKLSGSIPSC GDL +L+ L L
Sbjct: 703 LHLXSNKLSGSIPSCFGDLPALQELFL 729

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572272|ref|XP_002527075.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533580|gb|EEF35319.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 184/379 (48%), Positives = 252/379 (66%), Gaps = 3/379 (0%)

Query: 4   GNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLY 63
           GNL+ L+VL +  N L+G+ P  I +L S+   +    N+L+G+  + +C    +L+ L 
Sbjct: 188 GNLSNLQVLNMGLNQLSGSFPPKILDLPSLKF-IYLQVNNLSGNLKEILCNQNSKLQLLN 246

Query: 64  VSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQ 123
           ++ NQ  G IP++L+ CKEL  ++L  N+FTG IPR +GN TKLK L L  NNL G IP 
Sbjct: 247 LAGNQLYGQIPSDLYKCKELRSLALHANKFTGSIPRTIGNLTKLKWLSLGRNNLTGRIPL 306

Query: 124 EIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEG 183
           EIG+L+NL+I+ +  NNL G IP  +FN+ST+K +++ +N L GNLP+S  L  LPNL  
Sbjct: 307 EIGNLQNLQIVHLSFNNLNGSIPHALFNISTMKWIAMTSNNLLGNLPTSLGL-HLPNLIW 365

Query: 184 LILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSS- 242
           L LG+N  SG IPS+  NASKL  LEL  NSF+G IP +LG LRNL+ L L +N L+S  
Sbjct: 366 LYLGINKLSGPIPSYISNASKLTILELPSNSFTGFIPDSLGDLRNLQTLKLGANLLSSKK 425

Query: 243 TSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI 302
           TS+ +++FS+L NC++LK + L+ NP+DG LP S+GNLS S+E        I G + + I
Sbjct: 426 TSQELTIFSSLKNCQNLKYLWLSYNPLDGYLPHSVGNLSNSLESFLASDGLIKGSVHESI 485

Query: 303 GNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLN 362
           GNL +LT+L+LG N+L+G +P T+G LK LQGL L  N  +G IP E C    LY   L 
Sbjct: 486 GNLSSLTRLNLGNNDLTGRIPTTIGTLKHLQGLYLHGNDLDGSIPSELCDLRTLYNLELT 545

Query: 363 RNKLSGSIPSCLGDLNSLR 381
            NKLSGSIP+C  +L SLR
Sbjct: 546 GNKLSGSIPTCFSNLTSLR 564

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500845|ref|XP_004161209.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  312 bits (799), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 181/386 (46%), Positives = 245/386 (63%), Gaps = 4/386 (1%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           E+G L  L  L +  NL +G IP  IFNLSS+   L  S N+  G  PDD+CE LP L G
Sbjct: 212 EIGTLQSLRTLDIEFNLFSGPIPLFIFNLSSLVI-LGLSGNNFIGGLPDDICEDLPSLGG 270

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           LY+SYNQ  G +P+ LW C+ L  V+L++NQFTG IPR++GN T++K ++L  N L GEI
Sbjct: 271 LYLSYNQLSGQLPSTLWKCENLEDVALAYNQFTGSIPRNVGNLTRVKQIFLGVNYLSGEI 330

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
           P E+G L+NLE L + +N   G IP TIFN+S L T++L+ N LSG LP+    +GLPNL
Sbjct: 331 PYELGYLQNLEYLAMQENFFNGTIPPTIFNLSKLNTIALVKNQLSGTLPADLG-VGLPNL 389

Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQ-SNYLT 240
             L+LG N  +G+IP    N+S L   ++  NSFSGLIP   G+  NL  + L+ +N+ T
Sbjct: 390 VQLMLGRNKLTGTIPESITNSSMLTLFDVGDNSFSGLIPNVFGRFENLRWINLELNNFTT 449

Query: 241 SSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPK 300
            S      +FS L N  SL  + L+ NP++  LPSS  N S S + + M    I G IPK
Sbjct: 450 ESPPSERGIFSFLTNLTSLVRLELSHNPLNIFLPSSFVNFSSSFQYLSMVNTGIKGMIPK 509

Query: 301 EIGNLI-NLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKF 359
           +IGN + +LT L +  N ++G++P ++G+LK+LQGL L NN  EG IP E C    L + 
Sbjct: 510 DIGNFLRSLTVLVMDDNQITGTIPTSIGKLKQLQGLHLSNNSLEGNIPAEICQLENLDEL 569

Query: 360 YLNRNKLSGSIPSCLGDLNSLRILSL 385
           YL  NKLSG+IP C  +L++LR LSL
Sbjct: 570 YLANNKLSGAIPECFDNLSALRTLSL 595

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465016|ref|XP_004150225.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  310 bits (794), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 180/386 (46%), Positives = 244/386 (63%), Gaps = 4/386 (1%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           E+G L  L  L +  NL +G IP  IFNLSS+   L  S N+  G  PDD+CE LP L G
Sbjct: 190 EIGTLQSLRTLDIEFNLFSGPIPLFIFNLSSLVI-LGLSGNNFIGGLPDDICEDLPSLGG 248

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           LY+SYNQ  G +P+ LW C+ L  V+L++NQFTG IPR++GN T++K ++L  N L GEI
Sbjct: 249 LYLSYNQLSGQLPSTLWKCENLEDVALAYNQFTGSIPRNVGNLTRVKQIFLGVNYLSGEI 308

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
           P E+G L+NLE L + +N   G IP TIFN+S L T++L+ N LSG LP+    +GLPNL
Sbjct: 309 PYELGYLQNLEYLAMQENFFNGTIPPTIFNLSKLNTIALVKNQLSGTLPADLG-VGLPNL 367

Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQ-SNYLT 240
             L+LG N  +G+IP    N+S L   ++  NSFSGLIP   G+  NL  + L+ +N+ T
Sbjct: 368 VQLMLGRNELTGTIPESITNSSMLTLFDVGDNSFSGLIPNVFGRFENLRWINLELNNFTT 427

Query: 241 SSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPK 300
            S      +FS L N  SL  + L+ NP++  LPSS  N S S + + M    I G IPK
Sbjct: 428 ESPPSERGIFSFLTNLTSLVRLELSHNPLNIFLPSSFVNFSSSFQYLSMVNTGIKGMIPK 487

Query: 301 EIGNLI-NLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKF 359
           +IGN + +L  L +  N ++G++P ++G+LK+LQGL L NN  EG IP E C    L + 
Sbjct: 488 DIGNFLRSLIVLVMDDNQITGTIPTSIGKLKQLQGLHLSNNSLEGNIPAEICQLENLDEL 547

Query: 360 YLNRNKLSGSIPSCLGDLNSLRILSL 385
           YL  NKLSG+IP C  +L++LR LSL
Sbjct: 548 YLANNKLSGAIPECFDNLSALRTLSL 573

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.935	0.442	0.336	3.1e-47
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.909	0.339	0.325	4.6e-46
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.932	0.350	0.361	9.5e-46
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.909	0.312	0.333	1.8e-41
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.935	0.351	0.327	1.9e-41
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.903	0.291	0.323	9.1e-41
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.919	0.350	0.324	1.6e-39
TAIR|locus:2180587	811	RLP52 "receptor like protein 5	0.875	0.415	0.307	1.3e-38
TAIR|locus:4515102753	598	AT1G73066 [Arabidopsis thalian	0.898	0.578	0.314	1.9e-38
TAIR|locus:2154344	1135	AT5G48940 [Arabidopsis thalian	0.896	0.303	0.319	6.4e-38

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 500 (181.1 bits), Expect = 3.1e-47, P = 3.1e-47
 Identities = 122/363 (33%), Positives = 180/363 (49%)

Query:    23 IPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE 82
             I  S+ NLS + T L  S+N L+G  P ++   L RL+ L +++N   G IP  L +   
Sbjct:    94 ISPSLGNLSFLRT-LQLSDNHLSGKIPQELSR-LSRLQQLVLNFNSLSGEIPAALGNLTS 151

Query:    83 LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLV 142
             LS + L+ N  +G IP  LG  T L  L L+ N L G IP   G LR L  L +  NNL 
Sbjct:   152 LSVLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSFGQLRRLSFLSLAFNNLS 211

Query:   143 GFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNFSGSIPSFFFNA 202
             G IPD I+N+                         LP+L+ + +  N F G IP+   NA
Sbjct:   212 GAIPDPIWNISSLTIFEVISNKLSGTLPT-NAFSNLPSLQEVYMYYNQFHGRIPASIGNA 270

Query:   203 SKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVI 262
             S +    +  NSFSG++P  +G++RNL+RL L      +  +      +AL NC +L+ +
Sbjct:   271 SNISIFTIGLNSFSGVVPPEIGRMRNLQRLELPETLSEAEETNDWKFMTALTNCSNLQEV 330

Query:   263 VLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXXXX 322
              L      GVLP S+ NLS S+  + +    I G +P++IGNL+NL              
Sbjct:   331 ELGGCKFGGVLPDSVSNLSSSLVSLSIRDNKISGSLPRDIGNLVNLQYLSLANNSLTGSL 390

Query:   323 PITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRI 382
             P +  +LK L+ L + NNK  G +P    + ++L    +  N   G+IPS LG+L  L  
Sbjct:   391 PSSFSKLKNLRRLTVDNNKLIGSLPLTIGNLTQLTNMEVQFNAFGGTIPSTLGNLTKLFQ 450

Query:   383 LSL 385
             ++L
Sbjct:   451 INL 453

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 4.6e-46, P = 4.6e-46
 Identities = 115/353 (32%), Positives = 177/353 (50%)

Query:    23 IPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE 82
             IP  +  L  +   L+ S N L G  P  +     RL  + +S N     +P+ L    +
Sbjct:   113 IPQKVGRLFRLQY-LNMSYNLLEGRIPSSL-SNCSRLSTVDLSSNHLGHGVPSELGSLSK 170

Query:    83 LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLV 142
             L+ + LS N  TG  P  LGN T L+ L  ++N + GEIP E+  L  +   +I  N+  
Sbjct:   171 LAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFS 230

Query:   143 GFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNFSGSIPSFFFNA 202
             G  P  ++N+                       + LPNL  L+LG N F+G+IP    N 
Sbjct:   231 GGFPPALYNISSLESLSLADNSFSGNLRADFGYL-LPNLRRLLLGTNQFTGAIPKTLANI 289

Query:   203 SKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVI 262
             S L   +++ N  SG IP + G+LRNL  LG+++N L +++S  +    A+ NC  L+ +
Sbjct:   290 SSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGLEFIGAVANCTQLEYL 349

Query:   263 VLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXXXX 322
              +  N + G LP+SI NLS ++  +++ +  I G IP +IGNL++L +            
Sbjct:   350 DVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGEL 409

Query:   323 PITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLG 375
             P++ G+L  LQ +DL +N   G IP  F + +RL K +LN N   G IP  LG
Sbjct:   410 PVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLG 462

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 490 (177.5 bits), Expect = 9.5e-46, P = 9.5e-46
 Identities = 132/365 (36%), Positives = 178/365 (48%)

Query:    23 IPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLW-HCK 81
             IP  +  LS +   L+ S+NS+ GS P  +     +L  L +S+NQ +G IP  +    K
Sbjct:   119 IPPELSRLSRLQL-LELSDNSIQGSIPAAI-GACTKLTSLDLSHNQLRGMIPREIGASLK 176

Query:    82 ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNL 141
              LS + L  N  +G IP  LGN T L+   LSFN L G IP  +G L +L  + + QNNL
Sbjct:   177 HLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFNRLSGAIPSSLGQLSSLLTMNLGQNNL 236

Query:   142 VGFIPDTIFNMXXXXXXXXXXXXXXXXXXXXK-KLIGLPNLEGLILGLNNFSGSIPSFFF 200
              G IP++I+N+                      K + L  LE + +G N F G IP+   
Sbjct:   237 SGMIPNSIWNLSSLRAFSVRENKLGGMIPTNAFKTLHL--LEVIDMGTNRFHGKIPASVA 294

Query:   201 NASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLK 260
             NAS L  +++  N FSG+I    G+LRNL  L L  N   +   +     S L NC  L+
Sbjct:   295 NASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWRNLFQTREQDDWGFISDLTNCSKLQ 354

Query:   261 VIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXX 320
              + L EN + GVLP+S  NLS S+  + +    I G IPK+IGNLI L            
Sbjct:   355 TLNLGENNLGGVLPNSFSNLSTSLSFLALELNKITGSIPKDIGNLIGLQHLYLCNNNFRG 414

Query:   321 XXPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSL 380
               P +LGRLK L  L    N   G IP    + + L    L  NK SG IP  L +L +L
Sbjct:   415 SLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTELNILLLGTNKFSGWIPYTLSNLTNL 474

Query:   381 RILSL 385
               L L
Sbjct:   475 LSLGL 479

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.8e-41, P = 1.8e-41
 Identities = 121/363 (33%), Positives = 175/363 (48%)

Query:    23 IPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE 82
             IP    NLS +    D S N LTG     +   L  L  LY+  N     IP+ L + + 
Sbjct:   118 IPPQFGNLSKLIY-FDLSTNHLTGEISPSL-GNLKNLTVLYLHQNYLTSVIPSELGNMES 175

Query:    83 LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLV 142
             ++ ++LS N+ TG IP  LGN   L +LYL  N L G IP E+G++ ++  L + QN L 
Sbjct:   176 MTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLT 235

Query:   143 GFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNFSGSIPSFFFNA 202
             G IP T+ N+                     ++  + ++  L L  N  +GSIPS   N 
Sbjct:   236 GSIPSTLGNLKNLMVLYLYENYLTGVIP--PEIGNMESMTNLALSQNKLTGSIPSSLGNL 293

Query:   203 SKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVI 262
               L  L L  N  +G IP  LG + ++  L L +N LT S        S+L N K+L ++
Sbjct:   294 KNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIP------SSLGNLKNLTIL 347

Query:   263 VLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXXXX 322
              L EN + GV+P  +GN+  S+ ++ +    + G IP   GNL NLT             
Sbjct:   348 YLYENYLTGVIPPELGNME-SMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVI 406

Query:   323 PITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRI 382
             P  LG ++ +  LDL  NK  G +P  F +F++L   YL  N LSG+IP   G  NS  +
Sbjct:   407 PQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPP--GVANSSHL 464

Query:   383 LSL 385
              +L
Sbjct:   465 TTL 467

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.9e-41, P = 1.9e-41
 Identities = 119/363 (32%), Positives = 173/363 (47%)

Query:    23 IPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE 82
             IP+ + NL  +   L+ SNN   G  P  +      L  L +S N  +  +P       +
Sbjct:   121 IPSEVGNLFRLQY-LNMSNNLFGGVIPV-VLSNCSSLSTLDLSSNHLEQGVPLEFGSLSK 178

Query:    83 LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLV 142
             L  +SL  N  TG+ P  LGN T L++L   +N + GEIP +I  L+ +   RI  N   
Sbjct:   179 LVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQMIFFRIALNKFN 238

Query:   143 GFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNFSGSIPSFFFNA 202
             G  P  I+N+                       + LPNL+ L +G+N+F+G+IP    N 
Sbjct:   239 GVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSL-LPNLQILYMGINSFTGTIPETLSNI 297

Query:   203 SKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVI 262
             S L  L++  N  +G IP + G+L+NL  LGL +N L + +S  +    AL NC  L+ +
Sbjct:   298 SSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSGDLDFLGALTNCSQLQYL 357

Query:   263 VLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXXXX 322
              +  N + G LP  I NLS  + E+ +    I G IP  IGNL++L              
Sbjct:   358 NVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTLDLGENLLTGKL 417

Query:   323 PITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRI 382
             P +LG L +L+ + L +N   G IP    + S L   YL  N   GSIPS LG  + L  
Sbjct:   418 PPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYLLNNSFEGSIPSSLGSCSYLLD 477

Query:   383 LSL 385
             L+L
Sbjct:   478 LNL 480

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 9.1e-41, P = 9.1e-41
 Identities = 120/371 (32%), Positives = 185/371 (49%)

Query:    27 IFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRV 86
             +F+  S    L  +NN + GS P+D+ + LP L  L +  N F G IP +LW    L   
Sbjct:   396 VFDGCSSLGELLLTNNQINGSIPEDLWK-LP-LMALDLDSNNFTGEIPKSLWKSTNLMEF 453

Query:    87 SLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIP 146
             + S+N+  G +P ++GN+  LK L LS N L GEIP+EIG L +L +L ++ N   G IP
Sbjct:   454 TASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIP 513

Query:   147 DTIFNMXXXXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNFSGSIPS---FFFNAS 203
               + +                      K+  L  L+ L+L  NN SGSIPS    +F+  
Sbjct:   514 VELGDCTSLTTLDLGSNNLQGQIPD--KITALAQLQCLVLSYNNLSGSIPSKPSAYFHQI 571

Query:   204 K---LYYLE------LAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALV 254
             +   L +L+      L+YN  SG IP+ LG+   L  + L +N+L+    E+ +  S L 
Sbjct:   572 EMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSG---EIPASLSRLT 628

Query:   255 NCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXX 314
             N   L ++ L+ N + G +P  +GN S+ ++ + +    ++G IP+  G L +L K    
Sbjct:   629 N---LTILDLSGNALTGSIPKEMGN-SLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLT 684

Query:   315 XXXXXXXXPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCL 374
                     P +LG LK+L  +DL  N   G +  E     +L   Y+ +NK +G IPS L
Sbjct:   685 KNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSEL 744

Query:   375 GDLNSLRILSL 385
             G+L  L  L +
Sbjct:   745 GNLTQLEYLDV 755

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.6e-39, P = 1.6e-39
 Identities = 116/358 (32%), Positives = 172/358 (48%)

Query:    23 IPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE 82
             IP  +  LS +   LD   N L G  P  +     RL  L +  N+  G +P+ L     
Sbjct:   106 IPQEVGQLSRLEY-LDMGINYLRGPIPLGLYN-CSRLLNLRLDSNRLGGSVPSELGSLTN 163

Query:    83 LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLV 142
             L +++L  N   G++P  LGN T L+ L LS NNL GEIP ++  L  +  L++  NN  
Sbjct:   164 LVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQIWSLQLVANNFS 223

Query:   143 GFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNFSGSIPSFFFNA 202
             G  P  ++N+                      ++ LPNL    +G N F+GSIP+   N 
Sbjct:   224 GVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGIL-LPNLLSFNMGGNYFTGSIPTTLSNI 282

Query:   203 SKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVI 262
             S L  L +  N+ +G IP   G + NL+ L L +N L S +S  +   ++L NC  L+ +
Sbjct:   283 STLERLGMNENNLTGSIP-TFGNVPNLKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETL 341

Query:   263 VLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXXXX 322
              +  N + G LP SI NLS  +  + +    I G IP +IGNLINL K            
Sbjct:   342 GIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPL 401

Query:   323 PITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSL 380
             P +LG+L  L+ L L +N+  G IP    + + L    L+ N   G +P+ LG+ + L
Sbjct:   402 PTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPTSLGNCSHL 459

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2180587 RLP52 "receptor like protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 107/348 (30%), Positives = 172/348 (49%)

Query:    35 TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFT 94
             T ++F N + TG+ P  +C   P LK L +S+N F G  P  L++C +L  + LS N F 
Sbjct:    66 TEINFQNQNFTGTVPTTICN-FPNLKSLNLSFNYFAGEFPTVLYNCTKLQYLDLSQNLFN 124

Query:    95 GRIPRDLGN-STKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMX 153
             G +P D+   + KLK L L+ N+  G+IP+ IG +  L++L +  +   G  P  I ++ 
Sbjct:   125 GSLPDDINRLAPKLKYLDLAANSFAGDIPKNIGRISKLKVLNLYMSEYDGTFPSEIGDLS 184

Query:   154 XXXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNFSGSIPSFFF-NASKLYYLELAY 212
                                 +   L  L+ + L   N  G I +  F N + L +++L+ 
Sbjct:   185 ELEELQLALNDKFTPVKLPTEFGKLKKLKYMWLEEMNLIGEISAVVFENMTDLKHVDLSV 244

Query:   213 NSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGV 272
             N+ +G IP  L  L+NL  L L +N LT    E+    SA    K+L  + L+ N ++G 
Sbjct:   245 NNLTGRIPDVLFGLKNLTELYLFANDLTG---EIPKSISA----KNLVHLDLSANNLNGS 297

Query:   273 LPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLKKL 332
             +P SIGNL+ ++E +Y++   + G IP+ IG L  L +            P  +G + KL
Sbjct:   298 IPESIGNLT-NLELLYLFVNELTGEIPRAIGKLPELKELKLFTNKLTGEIPAEIGFISKL 356

Query:   333 QGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSL 380
             +  ++  N+  G +P   CH  +L    +  N L+G IP  LGD  +L
Sbjct:   357 ERFEVSENQLTGKLPENLCHGGKLQSVIVYSNNLTGEIPESLGDCETL 404

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:4515102753 AT1G73066 [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.9e-38, P = 1.9e-38
 Identities = 113/359 (31%), Positives = 165/359 (45%)

Query:    23 IPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE 82
             +P ++ +L S++  L   +NSLTG  P  +   +P L  L+V +N   G IP N+   KE
Sbjct:   137 VPDTLGSLKSLAD-LYLYSNSLTGELPKSLFR-IPVLNYLHVEHNNLTGLIPQNVGEAKE 194

Query:    83 LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLV 142
             L  + L  NQFTG IP  +GN +KL++LYL  N L+G +P  +  L +L  L +  N+L 
Sbjct:   195 LLHLRLFDNQFTGTIPESIGNCSKLEILYLHKNKLVGSLPASLNLLESLTDLFVANNSLR 254

Query:   143 GFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIG-LPNLEGLILGLNNFSGSIPSFFFN 201
             G +    F                         +G   +L+ L++   N SG+IPS    
Sbjct:   255 GTVQ---FGSTKCRNLVTLDLSYNEFEGGVPPELGNCSSLDALVIVSGNLSGTIPSSLGM 311

Query:   202 ASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKV 261
                L  L L+ N  SG IP  LG   +L  L L  N L           SAL   + L+ 
Sbjct:   312 LKNLTILNLSENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIP------SALGKLRKLES 365

Query:   262 IVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXXX 321
             + L EN   G +P  I  +  S+ ++ +Y+ N+ G++P+EI  L NL             
Sbjct:   366 LELFENRFSGEIPIEIWKIQ-SLTQLLVYRNNLTGKLPEEITKLKNLKIVTLFNNSFYGV 424

Query:   322 XPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSL 380
              P  LG    L+ +D   N F G IP   CH   L  F L  N+L G IP+ +    +L
Sbjct:   425 IPPNLGLNSNLEIIDFIGNNFTGEIPRNLCHGKMLTVFNLGSNRLHGKIPASVSQCKTL 483

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 6.4e-38, P = 6.4e-38
 Identities = 115/360 (31%), Positives = 178/360 (49%)

Query:    27 IFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRV 86
             I  L SI  G    N+ L+G  P+++      LK L ++  +  G +P +L    +L  +
Sbjct:   201 ISTLESIRAG---GNSELSGKIPEEI-GNCRNLKVLGLAATKISGSLPVSLGQLSKLQSL 256

Query:    87 SLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIP 146
             S+     +G IP++LGN ++L  L+L  N+L G +P+E+G L+NLE + + QNNL G IP
Sbjct:   257 SVYSTMLSGEIPKELGNCSELINLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIP 316

Query:   147 DTIFNMXXXXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLY 206
             + I  M                    K    L NL+ L+L  NN +GSIPS   N +KL 
Sbjct:   317 EEIGFMKSLNAIDLSMNYFSGTIP--KSFGNLSNLQELMLSSNNITGSIPSILSNCTKLV 374

Query:   207 YLELAYNSFSGLIPKALGQLRNLER-LGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLA 265
               ++  N  SGLIP  +G L+ L   LG Q N L  +  +       L  C++L+ + L+
Sbjct:   375 QFQIDANQISGLIPPEIGLLKELNIFLGWQ-NKLEGNIPD------ELAGCQNLQALDLS 427

Query:   266 ENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXXXXPIT 325
             +N + G LP+ +  L  ++ ++ +    I G IP EIGN  +L +            P  
Sbjct:   428 QNYLTGSLPAGLFQLR-NLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNNRITGEIPKG 486

Query:   326 LGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
             +G L+ L  LDL  N   GP+P E  +  +L    L+ N L G +P  L  L  L++L +
Sbjct:   487 IGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDV 546

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	385
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-58
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-57
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-52
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-44
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-43
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-18
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  204 bits (520), Expect = 2e-58
 Identities = 145/383 (37%), Positives = 211/383 (55%), Gaps = 18/383 (4%)

Query: 6   LAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVS 65
           L  ++ + L+NN L+G IP  IF  SS    L+ SNN+ TGS P      +P L+ L +S
Sbjct: 92  LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS---IPNLETLDLS 148

Query: 66  YNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI 125
            N   G IPN++     L  + L  N   G+IP  L N T L+ L L+ N L+G+IP+E+
Sbjct: 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL 208

Query: 126 GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLI 185
           G +++L+ + +  NNL G IP  I  +++L  L L+ N L+G +PSS  L  L NL+ L 
Sbjct: 209 GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS--LGNLKNLQYLF 266

Query: 186 LGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSE 245
           L  N  SG IP   F+  KL  L+L+ NS SG IP+ + QL+NLE L L SN  T     
Sbjct: 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326

Query: 246 LMSLFSALVNCKSLKVIVLAENPVDGVLPSSIG---NLSVSVEEIYMYKCNIHGRIPKEI 302
                 AL +   L+V+ L  N   G +P ++G   NL+V    + +   N+ G IP+ +
Sbjct: 327 ------ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV----LDLSTNNLTGEIPEGL 376

Query: 303 GNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLN 362
            +  NL KL L  N+L G +P +LG  + L+ + LQ+N F G +P EF     +Y   ++
Sbjct: 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS 436

Query: 363 RNKLSGSIPSCLGDLNSLRILSL 385
            N L G I S   D+ SL++LSL
Sbjct: 437 NNNLQGRINSRKWDMPSLQMLSL 459

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  201 bits (512), Expect = 2e-57
 Identities = 152/400 (38%), Positives = 211/400 (52%), Gaps = 24/400 (6%)

Query: 4   GNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLY 63
           G++  LE L L+NN+L+G IP  I + SS+   LD   N L G  P+ +   L  L+ L 
Sbjct: 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV-LDLGGNVLVGKIPNSLTN-LTSLEFLT 194

Query: 64  VSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQ 123
           ++ NQ  G IP  L   K L  + L +N  +G IP ++G  T L  L L +NNL G IP 
Sbjct: 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254

Query: 124 EIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEG 183
            +G+L+NL+ L + QN L G IP +IF++  L +L L +N+LSG +P  + +I L NLE 
Sbjct: 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP--ELVIQLQNLEI 312

Query: 184 LILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSST 243
           L L  NNF+G IP    +  +L  L+L  N FSG IPK LG+  NL  L L +N LT   
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372

Query: 244 SELMS---------LFS---------ALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVE 285
            E +          LFS         +L  C+SL+ + L +N   G LPS    L + V 
Sbjct: 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL-VY 431

Query: 286 EIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGP 345
            + +   N+ GRI     ++ +L  LSL  N   G LP + G  K+L+ LDL  N+F G 
Sbjct: 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGA 490

Query: 346 IPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           +P +    S L +  L+ NKLSG IP  L     L  L L
Sbjct: 491 VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  185 bits (472), Expect = 6e-52
 Identities = 144/396 (36%), Positives = 205/396 (51%), Gaps = 24/396 (6%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
           L NL  LE L L +N L G IP  +  + S+   +    N+L+G  P ++  GL  L  L
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW-IYLGYNNLSGEIPYEI-GGLTSLNHL 241

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
            + YN   GPIP++L + K L  + L  N+ +G IP  + +  KL  L LS N+L GEIP
Sbjct: 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Query: 123 QEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLE 182
           + +  L+NLEIL +  NN  G IP  + ++  L+ L L +N  SG +P  K L    NL 
Sbjct: 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP--KNLGKHNNLT 359

Query: 183 GLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSS 242
            L L  NN +G IP    ++  L+ L L  NS  G IPK+LG  R+L R+ LQ N  +  
Sbjct: 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419

Query: 243 -TSELMSL------------FSALVNCK-----SLKVIVLAENPVDGVLPSSIGNLSVSV 284
             SE   L                +N +     SL+++ LA N   G LP S G  S  +
Sbjct: 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--SKRL 477

Query: 285 EEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEG 344
           E + + +    G +P+++G+L  L +L L  N LSG +P  L   KKL  LDL +N+  G
Sbjct: 478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG 537

Query: 345 PIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSL 380
            IP  F     L +  L++N+LSG IP  LG++ SL
Sbjct: 538 QIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL 573

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  164 bits (417), Expect = 1e-44
 Identities = 123/370 (33%), Positives = 184/370 (49%), Gaps = 36/370 (9%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
           LGNL  L+ L L  N L+G IP SIF+L  + + LD S+NSL+G  P+ + + L  L+ L
Sbjct: 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS-LDLSDNSLSGEIPELVIQ-LQNLEIL 313

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
           ++  N F G IP  L     L  + L  N+F+G IP++LG    L +L LS NNL GEIP
Sbjct: 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373

Query: 123 QEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLE 182
           + + S  NL  L +  N+L G IP ++    +L+ + L +N+ SG LPS  +   LP + 
Sbjct: 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS--EFTKLPLVY 431

Query: 183 GLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSS 242
            L +  NN  G I S  ++   L  L LA N F G +P + G                  
Sbjct: 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS----------------- 474

Query: 243 TSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI 302
                         K L+ + L+ N   G +P  +G+LS  + ++ + +  + G IP E+
Sbjct: 475 --------------KRLENLDLSRNQFSGAVPRKLGSLS-ELMQLKLSENKLSGEIPDEL 519

Query: 303 GNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLN 362
            +   L  L L +N LSG +P +   +  L  LDL  N+  G IP    +   L +  ++
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579

Query: 363 RNKLSGSIPS 372
            N L GS+PS
Sbjct: 580 HNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  160 bits (406), Expect = 3e-43
 Identities = 119/356 (33%), Positives = 180/356 (50%), Gaps = 32/356 (8%)

Query: 53  CEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDL-GNSTKLKLLY 111
           C    R+  + +S     G I + ++    +  ++LS NQ +G IP D+   S+ L+ L 
Sbjct: 65  CNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124

Query: 112 LSFNNLIG----------------------EIPQEIGSLRNLEILRIDQNNLVGFIPDTI 149
           LS NN  G                      EIP +IGS  +L++L +  N LVG IP+++
Sbjct: 125 LSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184

Query: 150 FNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLE 209
            N+++L+ L+L +N L G +P   +L  + +L+ + LG NN SG IP      + L +L+
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPR--ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242

Query: 210 LAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPV 269
           L YN+ +G IP +LG L+NL+ L L  N L+       S+FS L    SL    L++N +
Sbjct: 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP--SIFS-LQKLISLD---LSDNSL 296

Query: 270 DGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRL 329
            G +P  +  L  ++E ++++  N  G+IP  + +L  L  L L  N  SG +P  LG+ 
Sbjct: 297 SGEIPELVIQLQ-NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355

Query: 330 KKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
             L  LDL  N   G IP   C    L+K  L  N L G IP  LG   SLR + L
Sbjct: 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL 411

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 86.4 bits (214), Expect = 3e-18
 Identities = 58/161 (36%), Positives = 87/161 (54%), Gaps = 3/161 (1%)

Query: 12  LVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKG 71
           L ++NN L G I +  +++ S+   L  + N   G  PD    G  RL+ L +S NQF G
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQM-LSLARNKFFGGLPDSF--GSKRLENLDLSRNQFSG 489

Query: 72  PIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNL 131
            +P  L    EL ++ LS N+ +G IP +L +  KL  L LS N L G+IP     +  L
Sbjct: 490 AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549

Query: 132 EILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSS 172
             L + QN L G IP  + N+ +L  +++ +N L G+LPS+
Sbjct: 550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.3 bits (154), Expect = 7e-11
 Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 26/107 (24%)

Query: 134 LRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSG 193
           L +D   L GFIP+ I  +  L++++L  N++ GN+P S                    G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-------------------LG 463

Query: 194 SIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLT 240
           SI S       L  L+L+YNSF+G IP++LGQL +L  L L  N L+
Sbjct: 464 SITS-------LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 36  GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTG 95
           GL   N  L G  P+D+ + L  L+ + +S N  +G IP +L     L  + LS+N F G
Sbjct: 422 GLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480

Query: 96  RIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSL 128
            IP  LG  T L++L L+ N+L G +P  +G  
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 31/80 (38%), Positives = 45/80 (56%)

Query: 296 GRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSR 355
           G IP +I  L +L  ++L  N++ G++P +LG +  L+ LDL  N F G IP      + 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 356 LYKFYLNRNKLSGSIPSCLG 375
           L    LN N LSG +P+ LG
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 313 LGYNN--LSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSI 370
           LG +N  L G +P  + +L+ LQ ++L  N   G IP      + L    L+ N  +GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 371 PSCLGDLNSLRILSL 385
           P  LG L SLRIL+L
Sbjct: 483 PESLGQLTSLRILNL 497

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 28/78 (35%), Positives = 51/78 (65%)

Query: 95  GRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMST 154
           G IP D+     L+ + LS N++ G IP  +GS+ +LE+L +  N+  G IP+++  +++
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 155 LKTLSLLNNTLSGNLPSS 172
           L+ L+L  N+LSG +P++
Sbjct: 492 LRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 7e-10
 Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 1/81 (1%)

Query: 67  NQ-FKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI 125
           NQ  +G IPN++   + L  ++LS N   G IP  LG+ T L++L LS+N+  G IP+ +
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 126 GSLRNLEILRIDQNNLVGFIP 146
           G L +L IL ++ N+L G +P
Sbjct: 487 GQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 271 GVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLK 330
           G +P+ I  L   ++ I +   +I G IP  +G++ +L  L L YN+ +GS+P +LG+L 
Sbjct: 432 GFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 331 KLQGLDLQNNKFEGPIP 347
            L+ L+L  N   G +P
Sbjct: 491 SLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 4/88 (4%)

Query: 112 LSFNN--LIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNL 169
           L  +N  L G IP +I  LR+L+ + +  N++ G IP ++ ++++L+ L L  N+ +G++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 170 PSSKKLIGLPNLEGLILGLNNFSGSIPS 197
           P S  L  L +L  L L  N+ SG +P+
Sbjct: 483 PES--LGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 75/272 (27%), Positives = 116/272 (42%), Gaps = 18/272 (6%)

Query: 113 SFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSS 172
             +N +  +P  +  L +L++L     +      D   N+  L  L  L+  L+    + 
Sbjct: 54  LSSNTLLLLPSSLSRLLSLDLLSPSGIS----SLDGSENLLNLLPLPSLDLNLNRLRSNI 109

Query: 173 KKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERL 232
            +L+ L NL  L L  NN +   P      S L  L+L+ N     +P  L  L NL+ L
Sbjct: 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNL 168

Query: 233 GLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKC 292
            L  N       +L  L   L N  +L  + L+ N +   LP  I  LS ++EE+ +   
Sbjct: 169 DLSFN-------DLSDLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLS-ALEELDLSN- 218

Query: 293 NIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCH 352
           N    +   + NL NL+ L L  NN    LP ++G L  L+ LDL NN+           
Sbjct: 219 NSIIELLSSLSNLKNLSGLELS-NNKLEDLPESIGNLSNLETLDLSNNQIS--SISSLGS 275

Query: 353 FSRLYKFYLNRNKLSGSIPSCLGDLNSLRILS 384
            + L +  L+ N LS ++P     L  L +L 
Sbjct: 276 LTNLRELDLSGNSLSNALPLIALLLLLLELLL 307

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 64/220 (29%), Positives = 90/220 (40%), Gaps = 9/220 (4%)

Query: 22  TIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK 81
           +      NL ++        N             L  L  L +  N      P       
Sbjct: 81  SSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKS 140

Query: 82  ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNL 141
            L  + LS N+    +P  L N   LK L LSFN+L  ++P+ + +L NL  L +   N 
Sbjct: 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS-GNK 197

Query: 142 VGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFN 201
           +  +P  I  +S L+ L L NN++   L S      L NL GL L  NN    +P    N
Sbjct: 198 ISDLPPEIELLSALEELDLSNNSIIELLSSLSN---LKNLSGLELS-NNKLEDLPESIGN 253

Query: 202 ASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241
            S L  L+L+ N  S     +LG L NL  L L  N L++
Sbjct: 254 LSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSN 291

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 186 LGLNN--FSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSST 243
           LGL+N    G IP+       L  + L+ NS  G IP +LG + +LE L L  N    S 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 244 SELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIG 278
            E +   +      SL+++ L  N + G +P+++G
Sbjct: 483 PESLGQLT------SLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 6   LAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVS 65
           L  L+ + L+ N + G IP S+ +++S+   LD S NS  GS P+ + + L  L+ L ++
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSL-EVLDLSYNSFNGSIPESLGQ-LTSLRILNLN 498

Query: 66  YNQFKGPIPNNL 77
            N   G +P  L
Sbjct: 499 GNSLSGRVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 18/60 (30%), Positives = 21/60 (35%)

Query: 307 NLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKL 366
           NL  L L  N L+         L  L+ LDL  N      P  F     L    L+ N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 9  LEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQ 68
          L+ L L+NN LT     +   L ++   LD S N+LT S   +   GLP L+ L +S N 
Sbjct: 2  LKSLDLSNNRLTVIPDGAFKGLPNLKV-LDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 69 F 69
           
Sbjct: 60 L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFP 49
           LG++  LEVL L+ N   G+IP S+  L+S+   L+ + NSL+G  P
Sbjct: 462 LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI-LNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 56/221 (25%), Positives = 85/221 (38%), Gaps = 29/221 (13%)

Query: 73  IPNNLWHCKELSRVSLSFNQFTGRIPRD-------LGNSTKLKLLYLSFNNLIGEIPQEI 125
           + + L     L  + LS N  TGRIPR        L     L+ L LS N L  +    +
Sbjct: 43  LASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101

Query: 126 GSLR---NLEILRIDQNNLVGFIPDTIF-----NMSTLKTLSLLNNTLSGNL--PSSKKL 175
            SL    +L+ L+++ N L       +          L+ L L  N L G      +K L
Sbjct: 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161

Query: 176 IGLPNLEGLILGLNNFSGS-IPSF---FFNASKLYYLELAYNSF----SGLIPKALGQLR 227
               +L+ L L  N    + I +          L  L+L  N      +  + + L  L+
Sbjct: 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221

Query: 228 NLERLGLQSNYLTSS-TSELMSLFSALVNCKSLKVIVLAEN 267
           +LE L L  N LT +  + L S   +     SL  + L+ N
Sbjct: 222 SLEVLNLGDNNLTDAGAAALASALLSPN--ISLLTLSLSCN 260

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	385
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.9
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.8
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.78
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.66
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.5
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.32
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.29
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.28
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.2
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.18
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.01
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.98
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.9
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.89
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.88
PLN03150	623	hypothetical protein; Provisional	98.87
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.87
PLN03150	623	hypothetical protein; Provisional	98.87
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.85
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.79
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.76
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.7
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.66
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.64
KOG4341	483	consensus F-box protein containing LRR [General fu	98.6
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.55
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.54
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.47
KOG4341	483	consensus F-box protein containing LRR [General fu	98.36
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.19
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.18
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.14
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.06
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.04
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.95
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.95
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.93
PRK15386	426	type III secretion protein GogB; Provisional	97.91
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.84
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.82
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.81
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.76
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.76
PRK15386	426	type III secretion protein GogB; Provisional	97.62
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.53
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.26
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.2
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.19
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.98
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.81
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.62
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.25
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.38
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.19
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.89
KOG4308	478	consensus LRR-containing protein [Function unknown	92.99
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.32
KOG4308	478	consensus LRR-containing protein [Function unknown	91.25
smart00370	26	LRR Leucine-rich repeats, outliers.	87.82
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.82
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.4
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	81.33
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	81.26
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	80.41

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=8e-41  Score=335.13  Aligned_cols=368  Identities=38%  Similarity=0.567  Sum_probs=219.4

Q ss_pred             CCCcCcccEEEecCccccCCCCcccc-cccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCC
Q 043347            3 LGNLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK   81 (385)
Q Consensus         3 ~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~   81 (385)
                      |.++++|+.|++++|.+.+.+|..++ .+.+++ +|++++|.+++.+|..   .+++|++|++++|.+.+..+..+..++
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~-~L~Ls~n~l~~~~p~~---~l~~L~~L~Ls~n~~~~~~p~~~~~l~  164 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLR-YLNLSNNNFTGSIPRG---SIPNLETLDLSNNMLSGEIPNDIGSFS  164 (968)
T ss_pred             HhCCCCCCEEECCCCccCCcCChHHhccCCCCC-EEECcCCccccccCcc---ccCCCCEEECcCCcccccCChHHhcCC
Confidence            44566666666666666555665554 555555 5666666665444432   355666666666666555555666666


Q ss_pred             CCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEcc
Q 043347           82 ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLL  161 (385)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~  161 (385)
                      +|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..++.+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus       165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  244 (968)
T PLN00113        165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV  244 (968)
T ss_pred             CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence            66666666666655666666666666666666666665666666666666666666666665566666666666666666


Q ss_pred             CCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccc
Q 043347          162 NNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS  241 (385)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  241 (385)
                      +|.+.+..|..  +..+++|+.|+++.|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus       245 ~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~  322 (968)
T PLN00113        245 YNNLTGPIPSS--LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG  322 (968)
T ss_pred             CceeccccChh--HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence            66665444432  5556666666666666655555556666666666666666655555556666666666666665544


Q ss_pred             cchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCC
Q 043347          242 STSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGS  321 (385)
Q Consensus       242 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  321 (385)
                      ..      +..+..+++|+.|++++|.+.+..|..+... ++++.|++++|++.+..|..+..+++|+.|++++|.+.+.
T Consensus       323 ~~------~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~  395 (968)
T PLN00113        323 KI------PVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE  395 (968)
T ss_pred             cC------ChhHhcCCCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEeccc
Confidence            31      2345556666666666666665555555444 5566666666665555555555555555555555555555


Q ss_pred             CccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccccccCccc
Q 043347          322 LPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRIL  383 (385)
Q Consensus       322 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l  383 (385)
                      .|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.++..+..+++|+.|
T Consensus       396 ~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  457 (968)
T PLN00113        396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML  457 (968)
T ss_pred             CCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEE
Confidence            55555555555555555555555555555555555555555555555555444445544444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3e-40  Score=331.03  Aligned_cols=371  Identities=36%  Similarity=0.533  Sum_probs=273.3

Q ss_pred             CCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCC
Q 043347            3 LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE   82 (385)
Q Consensus         3 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   82 (385)
                      |.++++|++|++++|.+.+.+|..+.++.+++ .|++++|.+.+.+|..+. .+++|++|++++|.+.+..+..+..+++
T Consensus       184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~  261 (968)
T PLN00113        184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLK-WIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKN  261 (968)
T ss_pred             hhhCcCCCeeeccCCCCcCcCChHHcCcCCcc-EEECcCCccCCcCChhHh-cCCCCCEEECcCceeccccChhHhCCCC
Confidence            56788888999988888878888888888888 688888888866776654 7888888888888887777778888888


Q ss_pred             CcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccC
Q 043347           83 LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLN  162 (385)
Q Consensus        83 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~  162 (385)
                      |++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus       262 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  341 (968)
T PLN00113        262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS  341 (968)
T ss_pred             CCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC
Confidence            88888888887777777777788888888888877777777777778888888877777766666677777777777777


Q ss_pred             CcccccCCCCcccCCCCCCceEEccccccCCCCCcc------------------------cccCCcccEEEccCcccccc
Q 043347          163 NTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSF------------------------FFNASKLYYLELAYNSFSGL  218 (385)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------------------------~~~~~~L~~L~l~~~~~~~~  218 (385)
                      |.+.+..|..  +..+++|+.|++++|.+.+..+..                        +..+++|+.|++++|.+.+.
T Consensus       342 n~l~~~~p~~--l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~  419 (968)
T PLN00113        342 NKFSGEIPKN--LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE  419 (968)
T ss_pred             CCCcCcCChH--HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence            7766554432  445566666666666554433444                        44444555555555554444


Q ss_pred             CcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCC
Q 043347          219 IPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRI  298 (385)
Q Consensus       219 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~  298 (385)
                      .+..+..+++|+.+++++|.+....      ...+..+++|+.|++++|.+.+..|..+..  .+++.|++++|++.+..
T Consensus       420 ~p~~~~~l~~L~~L~Ls~N~l~~~~------~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~--~~L~~L~ls~n~l~~~~  491 (968)
T PLN00113        420 LPSEFTKLPLVYFLDISNNNLQGRI------NSRKWDMPSLQMLSLARNKFFGGLPDSFGS--KRLENLDLSRNQFSGAV  491 (968)
T ss_pred             CChhHhcCCCCCEEECcCCcccCcc------ChhhccCCCCcEEECcCceeeeecCccccc--ccceEEECcCCccCCcc
Confidence            4444455555555555555544321      123445666777777777666655554432  57888888888888778


Q ss_pred             CccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccccc
Q 043347          299 PKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLN  378 (385)
Q Consensus       299 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  378 (385)
                      |..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|..+.+++
T Consensus       492 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  571 (968)
T PLN00113        492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE  571 (968)
T ss_pred             ChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCc
Confidence            88888888899999999988888888888888999999999988888888888888999999999998888888888888


Q ss_pred             cCccccC
Q 043347          379 SLRILSL  385 (385)
Q Consensus       379 ~L~~l~i  385 (385)
                      +|+.+++
T Consensus       572 ~L~~l~l  578 (968)
T PLN00113        572 SLVQVNI  578 (968)
T ss_pred             ccCEEec
Confidence            8887764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-37  Score=270.15  Aligned_cols=362  Identities=22%  Similarity=0.248  Sum_probs=290.3

Q ss_pred             cEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecc
Q 043347           10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLS   89 (385)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~   89 (385)
                      +.|++++|++...-+..+.+++++. .+++.+|.++ .+|.... ...+|+.|++.+|.++......+..++.||.||++
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq-~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQ-EVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcce-eeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            4577777777755556667777777 5777777777 6665442 45567777777777776666677778888888888


Q ss_pred             cccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccC
Q 043347           90 FNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNL  169 (385)
Q Consensus        90 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~  169 (385)
                      .|.+...--..+..-.++++|++.+|++++.....|..+.+|..|.++.|+++...+..|.++++|+.|++..|.+.-. 
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv-  236 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV-  236 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee-
Confidence            8877733333566667888888888888887777888888888888888888877777788889999999888887532 


Q ss_pred             CCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhh
Q 043347          170 PSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSL  249 (385)
Q Consensus       170 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  249 (385)
                       +...|..+++|+.|.+..|++.......|..+.++++|++..|++......++.+++.|+.|+++.|.+.....     
T Consensus       237 -e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~-----  310 (873)
T KOG4194|consen  237 -EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI-----  310 (873)
T ss_pred             -hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec-----
Confidence             33447888899999999998887777888889999999999999887778888899999999999998877643     


Q ss_pred             hHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCC---Ccccc
Q 043347          250 FSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGS---LPITL  326 (385)
Q Consensus       250 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~  326 (385)
                       ..+..+++|+.|+++.|.+....+..+..+ ..+++|.+++|.+......+|.++.+|+.|+++.|.+...   -...|
T Consensus       311 -d~WsftqkL~~LdLs~N~i~~l~~~sf~~L-~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f  388 (873)
T KOG4194|consen  311 -DSWSFTQKLKELDLSSNRITRLDEGSFRVL-SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF  388 (873)
T ss_pred             -chhhhcccceeEeccccccccCChhHHHHH-HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence             566778999999999999987777777777 7899999999999877777888899999999999987632   34466


Q ss_pred             ccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccccccCcccc
Q 043347          327 GRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILS  384 (385)
Q Consensus       327 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~  384 (385)
                      .++++|+.|.+.||++..+--.+|.++++|+.|++.+|.|-.+-+..|..+ +|+.|.
T Consensus       389 ~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv  445 (873)
T KOG4194|consen  389 NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV  445 (873)
T ss_pred             ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence            779999999999999987677788899999999999999998889988877 777664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-36  Score=262.12  Aligned_cols=351  Identities=23%  Similarity=0.270  Sum_probs=309.6

Q ss_pred             CCCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCC
Q 043347            2 ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK   81 (385)
Q Consensus         2 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~   81 (385)
                      .|-++++|+++++.+|.++ .+|.......+++ .|++.+|.|+ ++.....+.++.|+.||++.|.+.+.....|..-.
T Consensus        97 ~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~-~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~  173 (873)
T KOG4194|consen   97 FFYNLPNLQEVNLNKNELT-RIPRFGHESGHLE-KLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKV  173 (873)
T ss_pred             HHhcCCcceeeeeccchhh-hccccccccccee-EEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCC
Confidence            3678999999999999998 8988877777888 7999999999 88888888899999999999999988888899999


Q ss_pred             CCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEcc
Q 043347           82 ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLL  161 (385)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~  161 (385)
                      ++++|++++|.++......|..+.+|..|.+++|+++...++.|.++++|+.|++..|++...-.-.|.++++|+.+.+.
T Consensus       174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq  253 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ  253 (873)
T ss_pred             CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence            99999999999997777889999999999999999997777889999999999999999875545668899999999999


Q ss_pred             CCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccc
Q 043347          162 NNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS  241 (385)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  241 (385)
                      .|.+...  ....|..+.++++|+++.|++...-..++.++++|+.|++++|.+..+..+....++.|++|+++.|+++.
T Consensus       254 rN~I~kL--~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~  331 (873)
T KOG4194|consen  254 RNDISKL--DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR  331 (873)
T ss_pred             hcCcccc--cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence            9998754  23448899999999999999987788899999999999999999988888888899999999999999998


Q ss_pred             cchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCC---CCCccccCCCCccEEECcCccc
Q 043347          242 STSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHG---RIPKEIGNLINLTKLSLGYNNL  318 (385)
Q Consensus       242 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~  318 (385)
                      .+.      +.|..+..|+.|+++.|.+.......+..+ .++++|++.+|.++.   ....+|.++++|+.|++.+|++
T Consensus       332 l~~------~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l-ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql  404 (873)
T KOG4194|consen  332 LDE------GSFRVLSQLEELNLSHNSIDHLAEGAFVGL-SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL  404 (873)
T ss_pred             CCh------hHHHHHHHhhhhcccccchHHHHhhHHHHh-hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee
Confidence            865      567788999999999999886655555555 899999999998764   3455688899999999999999


Q ss_pred             cCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCc
Q 043347          319 SGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNK  365 (385)
Q Consensus       319 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  365 (385)
                      ......+|.+++.|++|+|.+|.+..+.+.+|..+ .|.+|.+..-.
T Consensus       405 k~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss  450 (873)
T KOG4194|consen  405 KSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS  450 (873)
T ss_pred             eecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence            97777899999999999999999998999999988 89988886543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=5.9e-32  Score=237.91  Aligned_cols=343  Identities=26%  Similarity=0.399  Sum_probs=195.7

Q ss_pred             cCcccEEEecCcccc-CCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCccc--------------
Q 043347            6 LAELEVLVLNNNLLT-GTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFK--------------   70 (385)
Q Consensus         6 ~~~l~~L~l~~~~~~-~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--------------   70 (385)
                      +|=++-.++++|.+. +.+|..+..+.... .|.+...++. .+|+... .+.+|++|.+.+|++.              
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~-WLkLnrt~L~-~vPeEL~-~lqkLEHLs~~HN~L~~vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMT-WLKLNRTKLE-QVPEELS-RLQKLEHLSMAHNQLISVHGELSDLPRLRS   82 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhhee-EEEechhhhh-hChHHHH-HHhhhhhhhhhhhhhHhhhhhhccchhhHH
Confidence            444555666666665 34555555555554 5555555555 5555543 4555555555554443              


Q ss_pred             ---------Cc-CCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccc
Q 043347           71 ---------GP-IPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNN  140 (385)
Q Consensus        71 ---------~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  140 (385)
                               .. +|..+..+..|..||++.|++. ..|..+...+++-+|+++.|.+.+.....+.++..|-.|+++.|+
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence                     21 2334445555555555555554 455555555555555555555553333334455555555555555


Q ss_pred             cccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccC-CCCCcccccCCcccEEEccCccccccC
Q 043347          141 LVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFS-GSIPSFFFNASKLYYLELAYNSFSGLI  219 (385)
Q Consensus       141 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~  219 (385)
                      +. .+|..+.++..|++|.+++|.+.-..  ...+..+..|+.|+|++..-+ ..++..+..+.+|..++++.|.+. ..
T Consensus       162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQ--LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQ--LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV  237 (1255)
T ss_pred             hh-hcCHHHHHHhhhhhhhcCCChhhHHH--HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence            54 34444555556666666655543211  111334455555555554322 344555666666666666666665 34


Q ss_pred             cccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCC-CC
Q 043347          220 PKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHG-RI  298 (385)
Q Consensus       220 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~  298 (385)
                      |+.+..+++|+.|++++|.++++..       ....-.+|++|+++.|.++ ..|..++.+ +.++.|...+|++.. .+
T Consensus       238 Pecly~l~~LrrLNLS~N~iteL~~-------~~~~W~~lEtLNlSrNQLt-~LP~avcKL-~kL~kLy~n~NkL~FeGi  308 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKITELNM-------TEGEWENLETLNLSRNQLT-VLPDAVCKL-TKLTKLYANNNKLTFEGI  308 (1255)
T ss_pred             hHHHhhhhhhheeccCcCceeeeec-------cHHHHhhhhhhccccchhc-cchHHHhhh-HHHHHHHhccCcccccCC
Confidence            5556666667777777766665433       1222245666666666666 445555555 566666666666653 35


Q ss_pred             CccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCccc
Q 043347          299 PKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLS  367 (385)
Q Consensus       299 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  367 (385)
                      |..++.+.+|+.+...+|.+. ..|+.+..|++|+.|.++.|.+. .+|++++-++.|..||+++|+-.
T Consensus       309 PSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  309 PSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             ccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence            666666777777777777665 66777777777777777777776 67777777777777777777544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=2e-31  Score=234.56  Aligned_cols=321  Identities=30%  Similarity=0.403  Sum_probs=266.9

Q ss_pred             CCCcCcccEEEecCccccCCCCcccccccceeceeEeecCcccc-CCChhhhcCCCcccEEEccCCcccCcCCCCccCCC
Q 043347            3 LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTG-SFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK   81 (385)
Q Consensus         3 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~   81 (385)
                      ++.|.+|++|++.+|.+. .+-..+..++.++ ++.++.|.+.. .+|.++| .+..|+.|+++.|.++ ..|..+..-+
T Consensus        51 L~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR-sv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AK  126 (1255)
T KOG0444|consen   51 LSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR-SVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAK  126 (1255)
T ss_pred             HHHHhhhhhhhhhhhhhH-hhhhhhccchhhH-HHhhhccccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhc
Confidence            456777888888888776 4555566778888 68888887663 4899998 8999999999999998 6677888899


Q ss_pred             CCcEEecccccccccCCCC-ccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEc
Q 043347           82 ELSRVSLSFNQFTGRIPRD-LGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSL  160 (385)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l  160 (385)
                      ++-+|++++|+|. .+|.. +-++..|-.|+++.|++. .+|+-+.++.+|++|.+++|.+....-..+..+++|++|.+
T Consensus       127 n~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm  204 (1255)
T KOG0444|consen  127 NSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM  204 (1255)
T ss_pred             CcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence            9999999999998 67764 568999999999999987 78888999999999999999887654455566778888888


Q ss_pred             cCCccc-ccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcc
Q 043347          161 LNNTLS-GNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL  239 (385)
Q Consensus       161 ~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  239 (385)
                      ++.+-+ ..+|.+  +..+.+|..++++.|+++ ..++++..+++|+.|++++|++++... ......+|+.|+++.|.+
T Consensus       205 s~TqRTl~N~Pts--ld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQL  280 (1255)
T KOG0444|consen  205 SNTQRTLDNIPTS--LDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQL  280 (1255)
T ss_pred             ccccchhhcCCCc--hhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchh
Confidence            876543 345544  668889999999999988 688999999999999999999986533 345668999999999998


Q ss_pred             cccchhhhhhhHhhhcccCceEEEccCCCCCC-CCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccc
Q 043347          240 TSSTSELMSLFSALVNCKSLKVIVLAENPVDG-VLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNL  318 (385)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  318 (385)
                      +.+       +.+++.+++|+.|...+|+++- -+|..+..+ ..++.+..++|++. ..|..++.|+.|+.|.++.|.+
T Consensus       281 t~L-------P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL-~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  281 TVL-------PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL-IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             ccc-------hHHHhhhHHHHHHHhccCcccccCCccchhhh-hhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence            875       4588899999999999998753 355566666 78888888888876 7899999999999999999999


Q ss_pred             cCCCccccccCCCCCeEeccCCccc
Q 043347          319 SGSLPITLGRLKKLQGLDLQNNKFE  343 (385)
Q Consensus       319 ~~~~~~~~~~~~~L~~L~l~~~~~~  343 (385)
                      . .+|+.+.-++-|+.||+..|.-.
T Consensus       352 i-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  352 I-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             e-echhhhhhcCCcceeeccCCcCc
Confidence            8 89999999999999999999544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.94  E-value=1.2e-30  Score=217.87  Aligned_cols=223  Identities=31%  Similarity=0.425  Sum_probs=150.2

Q ss_pred             CCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCC
Q 043347            4 GNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKEL   83 (385)
Q Consensus         4 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L   83 (385)
                      .++..++.+++++|++. +.|++++.+..++ .++.+++++. .+|..+. .+.+++.++++.|.+. ..++.+..+..+
T Consensus        65 ~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~-~l~vs~n~ls-~lp~~i~-s~~~l~~l~~s~n~~~-el~~~i~~~~~l  139 (565)
T KOG0472|consen   65 KNLACLTVLNVHDNKLS-QLPAAIGELEALK-SLNVSHNKLS-ELPEQIG-SLISLVKLDCSSNELK-ELPDSIGRLLDL  139 (565)
T ss_pred             hcccceeEEEeccchhh-hCCHHHHHHHHHH-HhhcccchHh-hccHHHh-hhhhhhhhhcccccee-ecCchHHHHhhh
Confidence            45677888999999887 8899999999888 6999999998 8888886 7888999999888877 566677888888


Q ss_pred             cEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccc--------------
Q 043347           84 SRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTI--------------  149 (385)
Q Consensus        84 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------------  149 (385)
                      +.++-.+|++. ..|.++..+.+|..+++.+|.++ ..|...-.++.|++++...|.+. .+|..+              
T Consensus       140 ~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~N  216 (565)
T KOG0472|consen  140 EDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRN  216 (565)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhc
Confidence            88888887776 56666666666666666665555 22222222555555555444443 233334              


Q ss_pred             --------cCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcc
Q 043347          150 --------FNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPK  221 (385)
Q Consensus       150 --------~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  221 (385)
                              ..|..|++++++.|.+. .+|. ....+++++..|++++|.+. ..++.+..+++|++|++++|.++. .+.
T Consensus       217 ki~~lPef~gcs~L~Elh~g~N~i~-~lpa-e~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~  292 (565)
T KOG0472|consen  217 KIRFLPEFPGCSLLKELHVGENQIE-MLPA-EHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPY  292 (565)
T ss_pred             ccccCCCCCccHHHHHHHhcccHHH-hhHH-HHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCc
Confidence                    44444555555544443 2222 22456677777777777776 455555666778888888877764 455


Q ss_pred             cccCCCCccEEEecCCcc
Q 043347          222 ALGQLRNLERLGLQSNYL  239 (385)
Q Consensus       222 ~~~~~~~L~~L~l~~~~~  239 (385)
                      .++++ +|+.|.+.||.+
T Consensus       293 sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  293 SLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             ccccc-eeeehhhcCCch
Confidence            56666 777777777754

>PLN03210 Resistant to P

Probab=99.93  E-value=4e-24  Score=215.41  Aligned_cols=339  Identities=20%  Similarity=0.218  Sum_probs=252.9

Q ss_pred             CCCCcCcccEEEecCccc------cCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCC
Q 043347            2 ELGNLAELEVLVLNNNLL------TGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPN   75 (385)
Q Consensus         2 ~~~~~~~l~~L~l~~~~~------~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~   75 (385)
                      +|.+|++|+.|.+..+..      ...+|..+..++...+.|++.++.+. .+|..+  ...+|+.|++.++.+. .++.
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-cccc
Confidence            477899999999876532      23466777777654448999999888 888876  5789999999999876 5666


Q ss_pred             CccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCC
Q 043347           76 NLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTL  155 (385)
Q Consensus        76 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  155 (385)
                      .+..+++|+.|+++++......| .+..+++|++|++.+|.....+|..+.++++|+.|++++|.....+|..+ ++++|
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL  706 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL  706 (1153)
T ss_pred             ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence            77889999999999876444555 47788999999999987666888889999999999999886544556544 78899


Q ss_pred             cEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccc-------cCcccccCCCC
Q 043347          156 KTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSG-------LIPKALGQLRN  228 (385)
Q Consensus       156 ~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~  228 (385)
                      +.|++++|.....+|.     ...+|+.|+++++.+.. ++..+ .+++|++|.+.++....       ..+.....+++
T Consensus       707 ~~L~Lsgc~~L~~~p~-----~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s  779 (1153)
T PLN03210        707 YRLNLSGCSRLKSFPD-----ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS  779 (1153)
T ss_pred             CEEeCCCCCCcccccc-----ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence            9999998865544443     24578899999888763 33332 46778888876643211       11112234578


Q ss_pred             ccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCc
Q 043347          229 LERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINL  308 (385)
Q Consensus       229 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L  308 (385)
                      |+.|++++|.....      ++..++++++|+.|++++|...+..|..+ .+ ++|+.|++++|.....+|..   .++|
T Consensus       780 L~~L~Ls~n~~l~~------lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L-~sL~~L~Ls~c~~L~~~p~~---~~nL  848 (1153)
T PLN03210        780 LTRLFLSDIPSLVE------LPSSIQNLHKLEHLEIENCINLETLPTGI-NL-ESLESLDLSGCSRLRTFPDI---STNI  848 (1153)
T ss_pred             chheeCCCCCCccc------cChhhhCCCCCCEEECCCCCCcCeeCCCC-Cc-cccCEEECCCCCcccccccc---cccc
Confidence            99999998854332      34567889999999999886555566554 23 78999999999776555543   3589


Q ss_pred             cEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCc
Q 043347          309 TKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNK  365 (385)
Q Consensus       309 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  365 (385)
                      +.|++++|.+. .+|..+..+++|+.|++++|.-...++..+..+++|+.+++++|.
T Consensus       849 ~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        849 SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            99999999987 688888899999999999985444677777788999999999984

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.93  E-value=2.2e-28  Score=204.42  Aligned_cols=344  Identities=25%  Similarity=0.358  Sum_probs=207.8

Q ss_pred             CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEE
Q 043347            7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRV   86 (385)
Q Consensus         7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L   86 (385)
                      -.+..++..+|.+. ..|.+++.+.++. .+++.+++++ ..|++.. ++..|++++...|-+. .+|..++.+..|..|
T Consensus       137 ~~l~dl~~~~N~i~-slp~~~~~~~~l~-~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~L  211 (565)
T KOG0472|consen  137 LDLEDLDATNNQIS-SLPEDMVNLSKLS-KLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELL  211 (565)
T ss_pred             hhhhhhhccccccc-cCchHHHHHHHHH-Hhhccccchh-hCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHH
Confidence            33444444444444 4444444444444 2455555554 4444444 2555666665555443 555666666666666


Q ss_pred             ecccccccccCCCCccCcccccEEEeecccccCCCCccc-CCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcc
Q 043347           87 SLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTL  165 (385)
Q Consensus        87 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~  165 (385)
                      ++..|.+. ..| .|.++..|.++.++.|.+. .+|... .+++++..|++++|+++ ..|..+..+.+|+.+++++|.+
T Consensus       212 yL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~i  287 (565)
T KOG0472|consen  212 YLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDI  287 (565)
T ss_pred             Hhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcc
Confidence            77766665 455 6666666666666666665 444443 36777788888888776 5666677777788888888777


Q ss_pred             cccCCCCcccCCCCCCceEEccccccCCCC--------------------------------------C---cccccCCc
Q 043347          166 SGNLPSSKKLIGLPNLEGLILGLNNFSGSI--------------------------------------P---SFFFNASK  204 (385)
Q Consensus       166 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------------------------------~---~~~~~~~~  204 (385)
                      +. .|..  ++++ +|+.|-+.+|.+...-                                      .   .......+
T Consensus       288 s~-Lp~s--Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~  363 (565)
T KOG0472|consen  288 SS-LPYS--LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIIT  363 (565)
T ss_pred             cc-CCcc--cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhh
Confidence            63 3322  4455 6677766666432100                                      0   00111223


Q ss_pred             ccEEEccCccccccCcccccC--CCCccEEEecCCcccccchhhhh-----------------hhHhhhcccCceEEEcc
Q 043347          205 LYYLELAYNSFSGLIPKALGQ--LRNLERLGLQSNYLTSSTSELMS-----------------LFSALVNCKSLKVIVLA  265 (385)
Q Consensus       205 L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~L~~L~l~  265 (385)
                      .+.|++++-+++....+.|..  -.-.+.++++.|++.+.+.....                 ....++.+++|+.|+++
T Consensus       364 tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~  443 (565)
T KOG0472|consen  364 TKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLS  443 (565)
T ss_pred             hhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecc
Confidence            445555555554433333321  12255566666655554432221                 12346677788888888


Q ss_pred             CCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCC
Q 043347          266 ENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGP  345 (385)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  345 (385)
                      +|.+. ..|..++.+ ..++.++++.|.+. ..|.....+..++.+-.++|++....+..+..+.+|.+||+.+|.+. .
T Consensus       444 NN~Ln-~LP~e~~~l-v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~  519 (565)
T KOG0472|consen  444 NNLLN-DLPEEMGSL-VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-Q  519 (565)
T ss_pred             cchhh-hcchhhhhh-hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-h
Confidence            77665 345555555 46888888888665 56666666667777777777777666666788888888888888887 6


Q ss_pred             ChhhhhcCCCccEEEccCCccc
Q 043347          346 IPHEFCHFSRLYKFYLNRNKLS  367 (385)
Q Consensus       346 ~~~~~~~~~~L~~L~l~~~~~~  367 (385)
                      +|..++++.+|+.|+++||++.
T Consensus       520 IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  520 IPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             CChhhccccceeEEEecCCccC
Confidence            7777888888888888888886

>PLN03210 Resistant to P

Probab=99.92  E-value=3.4e-23  Score=208.77  Aligned_cols=342  Identities=21%  Similarity=0.258  Sum_probs=256.4

Q ss_pred             CcccccccceeceeEeecCccc------cCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccC
Q 043347           24 PASIFNLSSISTGLDFSNNSLT------GSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRI   97 (385)
Q Consensus        24 ~~~~~~~~~l~~~L~l~~~~~~------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~   97 (385)
                      +.++.++.+++ .|.+.++...      ..+|.++..-.+.|+.|.+.++.+. .+|..| ...+|+.|++.++.+. .+
T Consensus       551 ~~aF~~m~~L~-~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L  626 (1153)
T PLN03210        551 ENAFKGMRNLL-FLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KL  626 (1153)
T ss_pred             HHHHhcCcccc-EEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cc
Confidence            34567788888 7888765432      2456665433356999999988876 556565 5789999999999887 67


Q ss_pred             CCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCC
Q 043347           98 PRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIG  177 (385)
Q Consensus        98 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~  177 (385)
                      +..+..+++|++|+++++.....+| .++.+++|+.|++.+|.....+|..+..+++|+.|++++|.....+|...   .
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~  702 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---N  702 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---C
Confidence            7788899999999999876554666 47889999999999987666788889999999999999987655666532   6


Q ss_pred             CCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhh-hHhhhcc
Q 043347          178 LPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSL-FSALVNC  256 (385)
Q Consensus       178 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~  256 (385)
                      +++|+.|++++|.....++..   .++|+.|++++|.+... +..+ .+++|+.|.+.++............ .......
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS  777 (1153)
T ss_pred             CCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccc-cccc-cccccccccccccchhhccccccccchhhhhcc
Confidence            789999999988654334332   46789999999987643 4333 5788888888765422211111000 0122345


Q ss_pred             cCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEe
Q 043347          257 KSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLD  336 (385)
Q Consensus       257 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  336 (385)
                      ++|+.|++++|......|..+..+ ++|+.|++++|...+.+|... .+++|+.|++++|.....+|..   ..+|+.|+
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L-~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~  852 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNL-HKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLN  852 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCC-CCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeE
Confidence            789999999998877888888877 899999999998766677654 6899999999998665455543   46899999


Q ss_pred             ccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccccccCcccc
Q 043347          337 LQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILS  384 (385)
Q Consensus       337 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~  384 (385)
                      +++|.++ ..|..+..+++|+.|++++|+-...+|..+..+++|+.++
T Consensus       853 Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~  899 (1153)
T PLN03210        853 LSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD  899 (1153)
T ss_pred             CCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence            9999998 7888899999999999999865556776666677766654

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.90  E-value=3.4e-26  Score=209.73  Aligned_cols=361  Identities=29%  Similarity=0.371  Sum_probs=220.6

Q ss_pred             cCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcE
Q 043347            6 LAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSR   85 (385)
Q Consensus         6 ~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   85 (385)
                      +-+|+.|++++|.+. .+|..+..++.++ .|+++.|.|. .+|... ..+.+|++++|.+|.+. ..|..+..+++|++
T Consensus        44 ~v~L~~l~lsnn~~~-~fp~~it~l~~L~-~ln~s~n~i~-~vp~s~-~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~  118 (1081)
T KOG0618|consen   44 RVKLKSLDLSNNQIS-SFPIQITLLSHLR-QLNLSRNYIR-SVPSSC-SNMRNLQYLNLKNNRLQ-SLPASISELKNLQY  118 (1081)
T ss_pred             eeeeEEeeccccccc-cCCchhhhHHHHh-hcccchhhHh-hCchhh-hhhhcchhheeccchhh-cCchhHHhhhcccc
Confidence            345889999999887 7888888899999 6999999998 788544 47899999999888766 78888899999999


Q ss_pred             EecccccccccCCCCccCcccc-------------------cEEEeecccccCCCCcccC-------------------C
Q 043347           86 VSLSFNQFTGRIPRDLGNSTKL-------------------KLLYLSFNNLIGEIPQEIG-------------------S  127 (385)
Q Consensus        86 L~l~~~~~~~~~~~~l~~l~~L-------------------~~L~l~~~~~~~~~~~~~~-------------------~  127 (385)
                      |++++|.+. ..|..+..+..+                   +.+++..+.+.+.++..+.                   +
T Consensus       119 LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~  197 (1081)
T KOG0618|consen  119 LDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSN  197 (1081)
T ss_pred             cccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhh
Confidence            999998765 344333332222                   2222222222222222221                   2


Q ss_pred             CcCCcEE--------------------EecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEcc
Q 043347          128 LRNLEIL--------------------RIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILG  187 (385)
Q Consensus       128 l~~L~~L--------------------~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  187 (385)
                      +++|+.+                    +.++|.++....  -....+|+.++++.+.+. .+|..  ...+.+|+.++..
T Consensus       198 ~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~w--i~~~~nle~l~~n  272 (1081)
T KOG0618|consen  198 LANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEW--IGACANLEALNAN  272 (1081)
T ss_pred             ccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHH--HHhcccceEeccc
Confidence            2222222                    222222221100  011235666666666655 34422  5567778888877


Q ss_pred             ccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHh---------------
Q 043347          188 LNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSA---------------  252 (385)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---------------  252 (385)
                      .|.+. ..+..+....+|+.+....|.+.- .+......+.|+.|++..|.+...++..+.....               
T Consensus       273 ~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l  350 (1081)
T KOG0618|consen  273 HNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL  350 (1081)
T ss_pred             chhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccc
Confidence            77764 344444555666666666666653 2334455666666666666665555433221111               


Q ss_pred             ----hhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCcccccc
Q 043347          253 ----LVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGR  328 (385)
Q Consensus       253 ----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  328 (385)
                          -..++.|..|++.+|.+++...+.+... .+|+.|++++|.+.......+.+++.|++|++++|+++ .+|+....
T Consensus       351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~-~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~  428 (1081)
T KOG0618|consen  351 PSYEENNHAALQELYLANNHLTDSCFPVLVNF-KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVAN  428 (1081)
T ss_pred             ccccchhhHHHHHHHHhcCcccccchhhhccc-cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHh
Confidence                0123345666777777776666655555 67778888887777555556677777778888887777 66677777


Q ss_pred             CCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccC-CCcccccccCcccc
Q 043347          329 LKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSI-PSCLGDLNSLRILS  384 (385)
Q Consensus       329 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~l~  384 (385)
                      ++.|++|...+|++. ..| .+.+++.|+.+|++-|+++.+. |..... ++|++|+
T Consensus       429 ~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLd  482 (1081)
T KOG0618|consen  429 LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLD  482 (1081)
T ss_pred             hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceee
Confidence            777777777777776 566 5566777777777777766542 332221 5566655

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.87  E-value=2.1e-24  Score=198.19  Aligned_cols=241  Identities=30%  Similarity=0.338  Sum_probs=162.7

Q ss_pred             CcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccE
Q 043347          128 LRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYY  207 (385)
Q Consensus       128 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  207 (385)
                      ..+|++++++.+.+. .+|+++..+.+|+.++..+|.+.. .|..  ......|+.+....|.+. ..+......++|++
T Consensus       240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~-lp~r--i~~~~~L~~l~~~~nel~-yip~~le~~~sL~t  314 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVA-LPLR--ISRITSLVSLSAAYNELE-YIPPFLEGLKSLRT  314 (1081)
T ss_pred             cccceeeecchhhhh-cchHHHHhcccceEecccchhHHh-hHHH--HhhhhhHHHHHhhhhhhh-hCCCcccccceeee
Confidence            458888888888876 455888888888888888887742 2211  223445555555555544 23444444555666


Q ss_pred             EEccCccccccCcccc-------------------------cCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEE
Q 043347          208 LELAYNSFSGLIPKAL-------------------------GQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVI  262 (385)
Q Consensus       208 L~l~~~~~~~~~~~~~-------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L  262 (385)
                      |++..|++.......+                         ..++.|+.|.+.+|.+++.      .+..+.++++|+.|
T Consensus       315 LdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~------c~p~l~~~~hLKVL  388 (1081)
T KOG0618|consen  315 LDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS------CFPVLVNFKHLKVL  388 (1081)
T ss_pred             eeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc------chhhhccccceeee
Confidence            6665554433211111                         2234566666666666553      56778888999999


Q ss_pred             EccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcc
Q 043347          263 VLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKF  342 (385)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  342 (385)
                      ++++|.+.......+..+ ..|++|.+++|++. .+|.....++.|+.|...+|.+. .+| .+..+++|+.+|++.|.+
T Consensus       389 hLsyNrL~~fpas~~~kl-e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L  464 (1081)
T KOG0618|consen  389 HLSYNRLNSFPASKLRKL-EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNL  464 (1081)
T ss_pred             eecccccccCCHHHHhch-HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchh
Confidence            999998875555555555 78999999999987 56677888889999999998887 667 677888999999999988


Q ss_pred             cCCChhhhhcCCCccEEEccCCcccccCCCcccccccCccc
Q 043347          343 EGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRIL  383 (385)
Q Consensus       343 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l  383 (385)
                      +.........-|+|+.||++||.-....-..|..++++...
T Consensus       465 ~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~  505 (1081)
T KOG0618|consen  465 SEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQM  505 (1081)
T ss_pred             hhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhhe
Confidence            75444433333899999999987554445555555555443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.84  E-value=1.1e-22  Score=170.16  Aligned_cols=350  Identities=21%  Similarity=0.230  Sum_probs=241.1

Q ss_pred             cccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEeccc-cccccc
Q 043347           18 LLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSF-NQFTGR   96 (385)
Q Consensus        18 ~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~   96 (385)
                      .++ ++|.   +++.-.+.+.|..|+|+ .+|+.+|..+++|+.|++++|.+..+.+++|.+++.+..|-+.+ |.|++.
T Consensus        57 GL~-eVP~---~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l  131 (498)
T KOG4237|consen   57 GLT-EVPA---NLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL  131 (498)
T ss_pred             Ccc-cCcc---cCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence            344 5665   45555558999999999 99999999999999999999999999999999999998887776 888854


Q ss_pred             CCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCccc------ccC-
Q 043347           97 IPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLS------GNL-  169 (385)
Q Consensus        97 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~------~~~-  169 (385)
                      -...|+++..|+-|.+.-|.+.-...++|..++++..|.+.+|.+...-...+..+..++.+.+..|.+.      +.. 
T Consensus       132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~  211 (498)
T KOG4237|consen  132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD  211 (498)
T ss_pred             hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence            4457899999999999999888777788999999999999999887555556777777787777666521      000 


Q ss_pred             ---CCCcccCCCC----------------------CCceE--Ecc-ccccC-CCCCcccccCCcccEEEccCccccccCc
Q 043347          170 ---PSSKKLIGLP----------------------NLEGL--ILG-LNNFS-GSIPSFFFNASKLYYLELAYNSFSGLIP  220 (385)
Q Consensus       170 ---~~~~~~~~~~----------------------~L~~L--~l~-~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~  220 (385)
                         .....++.+.                      .++.+  .+. .+.+. ......|..+++|++|++++|+++..-.
T Consensus       212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~  291 (498)
T KOG4237|consen  212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED  291 (498)
T ss_pred             HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence               0000011111                      11111  001 11111 1123457788889999999988888777


Q ss_pred             ccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCC---
Q 043347          221 KALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGR---  297 (385)
Q Consensus       221 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~---  297 (385)
                      .+|.....+++|.+..|++..+..      ..|.++..|+.|++++|.++...|..+... .++.+|.+-.|.+.-.   
T Consensus       292 ~aFe~~a~l~eL~L~~N~l~~v~~------~~f~~ls~L~tL~L~~N~it~~~~~aF~~~-~~l~~l~l~~Np~~CnC~l  364 (498)
T KOG4237|consen  292 GAFEGAAELQELYLTRNKLEFVSS------GMFQGLSGLKTLSLYDNQITTVAPGAFQTL-FSLSTLNLLSNPFNCNCRL  364 (498)
T ss_pred             hhhcchhhhhhhhcCcchHHHHHH------HhhhccccceeeeecCCeeEEEeccccccc-ceeeeeehccCcccCccch
Confidence            888888888999988888776533      467788888889999998887777777766 6888888876643210   


Q ss_pred             --CCccc-----------cCCCCccEEECcCccccC---CCcc---------ccccCCC---------------------
Q 043347          298 --IPKEI-----------GNLINLTKLSLGYNNLSG---SLPI---------TLGRLKK---------------------  331 (385)
Q Consensus       298 --~~~~~-----------~~~~~L~~L~l~~~~~~~---~~~~---------~~~~~~~---------------------  331 (385)
                        ..+|+           ++...++.+.+++..+.+   ..++         +...|+.                     
T Consensus       365 ~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~  444 (498)
T KOG4237|consen  365 AWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPV  444 (498)
T ss_pred             HHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCc
Confidence              00111           122346666666554331   1111         1111111                     


Q ss_pred             -CCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccccccCccc
Q 043347          332 -LQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRIL  383 (385)
Q Consensus       332 -L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l  383 (385)
                       -..+++.+|+++ ..|..  .+.+| .+|+++|+++.-.-..|.++.+|.++
T Consensus       445 d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tl  493 (498)
T KOG4237|consen  445 DVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTL  493 (498)
T ss_pred             hhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhhee
Confidence             235677788887 44444  45677 89999999986667778899888765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.80  E-value=1.4e-18  Score=163.90  Aligned_cols=260  Identities=25%  Similarity=0.313  Sum_probs=122.0

Q ss_pred             cEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEeccc
Q 043347           60 KGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQN  139 (385)
Q Consensus        60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  139 (385)
                      ..|+++++.++ .+|..+.  ++|+.|++.+|.+. .+|..   +++|++|++++|.++ .+|..   .++|+.|++++|
T Consensus       204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N  272 (788)
T PRK15387        204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSN  272 (788)
T ss_pred             cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCC
Confidence            34555555544 3333332  24555555555544 23321   345555555555544 22321   235555555555


Q ss_pred             ccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccC
Q 043347          140 NLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLI  219 (385)
Q Consensus       140 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  219 (385)
                      .+.. ++.   ..+.|+.|++++|.+.. +|.     ..++|+.|++++|.+... +..   ...|+.|.+++|.+... 
T Consensus       273 ~L~~-Lp~---lp~~L~~L~Ls~N~Lt~-LP~-----~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~L-  337 (788)
T PRK15387        273 PLTH-LPA---LPSGLCKLWIFGNQLTS-LPV-----LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTSL-  337 (788)
T ss_pred             chhh-hhh---chhhcCEEECcCCcccc-ccc-----cccccceeECCCCccccC-CCC---cccccccccccCccccc-
Confidence            4432 111   12345555555555442 221     124455555555554421 111   12345555555555432 


Q ss_pred             cccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCC
Q 043347          220 PKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIP  299 (385)
Q Consensus       220 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~  299 (385)
                      +.   ...+|+.|++++|.++..+.    .      .++|+.|++++|.+.. +|..    +.+|+.|++++|++.+ +|
T Consensus       338 P~---lp~~Lq~LdLS~N~Ls~LP~----l------p~~L~~L~Ls~N~L~~-LP~l----~~~L~~LdLs~N~Lt~-LP  398 (788)
T PRK15387        338 PT---LPSGLQELSVSDNQLASLPT----L------PSELYKLWAYNNRLTS-LPAL----PSGLKELIVSGNRLTS-LP  398 (788)
T ss_pred             cc---cccccceEecCCCccCCCCC----C------Ccccceehhhcccccc-Cccc----ccccceEEecCCcccC-CC
Confidence            21   11355566666655554322    0      1345555555555543 2221    1355666666665552 22


Q ss_pred             ccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCC
Q 043347          300 KEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPS  372 (385)
Q Consensus       300 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  372 (385)
                      ..   .++|+.|++++|.+. .+|..   ..+|+.|++++|+++ .+|..++.+++|+.|++++|++++..+.
T Consensus       399 ~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        399 VL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             Cc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            21   235666666666665 23332   234556666666665 4555566666666666666666554443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.78  E-value=7e-18  Score=159.32  Aligned_cols=261  Identities=26%  Similarity=0.298  Sum_probs=177.8

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN  115 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  115 (385)
                      .|+++++.++ .+|..+.   ++|+.|.+.+|.++. ++.   ..++|++|++++|.+. .+|..   .++|+.|++.+|
T Consensus       205 ~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N  272 (788)
T PRK15387        205 VLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSN  272 (788)
T ss_pred             EEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCC
Confidence            5777777777 7777553   367778888777763 332   2467888888888776 44432   457778888877


Q ss_pred             cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC
Q 043347          116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI  195 (385)
Q Consensus       116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  195 (385)
                      .+. .+|..   ..+|+.|++++|.++. +|.   ..++|+.|++++|.+.. +|.     ....|+.|.+.+|.+.. +
T Consensus       273 ~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~-----lp~~L~~L~Ls~N~L~~-L  337 (788)
T PRK15387        273 PLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA-----LPSELCKLWAYNNQLTS-L  337 (788)
T ss_pred             chh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCC-----CcccccccccccCcccc-c
Confidence            765 34432   2467778888877763 232   24678888888887763 232     12356777777777663 2


Q ss_pred             CcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCC
Q 043347          196 PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS  275 (385)
Q Consensus       196 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  275 (385)
                      +.   ...+|+.|++++|+++.. +.   ..++|+.|++++|.+..++.          ..++|+.|++++|.+.+ .|.
T Consensus       338 P~---lp~~Lq~LdLS~N~Ls~L-P~---lp~~L~~L~Ls~N~L~~LP~----------l~~~L~~LdLs~N~Lt~-LP~  399 (788)
T PRK15387        338 PT---LPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSLPA----------LPSGLKELIVSGNRLTS-LPV  399 (788)
T ss_pred             cc---cccccceEecCCCccCCC-CC---CCcccceehhhccccccCcc----------cccccceEEecCCcccC-CCC
Confidence            22   124788888888888753 32   23578888888888775432          12468888898888874 333


Q ss_pred             cccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhh
Q 043347          276 SIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEF  350 (385)
Q Consensus       276 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  350 (385)
                      .    +.+++.|++++|++.+ +|..   +.+|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+
T Consensus       400 l----~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        400 L----PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             c----ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            2    2578889999998874 4432   347888999999988 678888888999999999999987766655

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.76  E-value=1.7e-20  Score=157.15  Aligned_cols=282  Identities=23%  Similarity=0.146  Sum_probs=136.8

Q ss_pred             CCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecc-cccccccCccccCCCCCcEEEc
Q 043347           82 ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQ-NNLVGFIPDTIFNMSTLKTLSL  160 (385)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~l  160 (385)
                      .-..+++..|+|...-+..|+.+++|+.|+++.|.|....|++|..++.+..|.+.+ |++++.....|..+..++-|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            445566677777644445666777777777777777666666777777666666554 6666555566666666666666


Q ss_pred             cCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCccc
Q 043347          161 LNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLT  240 (385)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  240 (385)
                      .-|.+.-. .. ..+..++++..|.+.++.+.......+..+..++++.+..|.+..+     ++++.+...        
T Consensus       148 Nan~i~Ci-r~-~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd-----CnL~wla~~--------  212 (498)
T KOG4237|consen  148 NANHINCI-RQ-DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD-----CNLPWLADD--------  212 (498)
T ss_pred             Chhhhcch-hH-HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc-----cccchhhhH--------
Confidence            55554321 11 2255666666666666665544444555566666666655542111     111111100        


Q ss_pred             ccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCC-CccccCCCCccEEECcCcccc
Q 043347          241 SSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRI-PKEIGNLINLTKLSLGYNNLS  319 (385)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~  319 (385)
                           ....+..++.........+.+..+..+....+.....++.+=-.+.|...... ...|..+++|+.|++++|+++
T Consensus       213 -----~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~  287 (498)
T KOG4237|consen  213 -----LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT  287 (498)
T ss_pred             -----HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence                 00001111111111111122221111111111110001100011112111111 223455555666666666555


Q ss_pred             CCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccccccCccc
Q 043347          320 GSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRIL  383 (385)
Q Consensus       320 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l  383 (385)
                      ++-+.+|.+...++.|.|.+|++..+...+|.++..|+.|++.+|+|+.+.|..|..+.+|.+|
T Consensus       288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l  351 (498)
T KOG4237|consen  288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL  351 (498)
T ss_pred             hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence            5555555555556666666665555555555555555666666666655555555555555444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=3.8e-19  Score=156.81  Aligned_cols=81  Identities=22%  Similarity=0.132  Sum_probs=40.0

Q ss_pred             EEccCCccc-CcCCCCccCCCCCcEEecccccccc----cCCCCccCcccccEEEeecccccC------CCCcccCCCcC
Q 043347           62 LYVSYNQFK-GPIPNNLWHCKELSRVSLSFNQFTG----RIPRDLGNSTKLKLLYLSFNNLIG------EIPQEIGSLRN  130 (385)
Q Consensus        62 L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~~~~l~~  130 (385)
                      |++..+.+. ......+..+..|+.++++++.+..    .++..+...+.++++++.++.+..      .++..+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            445455444 2233344555667777777666532    123334455566666666654431      11223344555


Q ss_pred             CcEEEecccccc
Q 043347          131 LEILRIDQNNLV  142 (385)
Q Consensus       131 L~~L~l~~~~~~  142 (385)
                      |+.|++++|.+.
T Consensus        83 L~~L~l~~~~~~   94 (319)
T cd00116          83 LQELDLSDNALG   94 (319)
T ss_pred             eeEEEccCCCCC
Confidence            555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=8.3e-19  Score=154.62  Aligned_cols=259  Identities=24%  Similarity=0.231  Sum_probs=120.1

Q ss_pred             EEecccccccc-cCCCCccCcccccEEEeecccccCC----CCcccCCCcCCcEEEeccccccc------ccCccccCCC
Q 043347           85 RVSLSFNQFTG-RIPRDLGNSTKLKLLYLSFNNLIGE----IPQEIGSLRNLEILRIDQNNLVG------FIPDTIFNMS  153 (385)
Q Consensus        85 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~l~  153 (385)
                      .|++..+.+.+ .....+..+..|+++++.++.+...    ++..+...+.+++++++++.+..      ..+..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            35555555542 2223445566788888888776432    33345566677888777765541      1223344566


Q ss_pred             CCcEEEccCCcccccCCCCcccCCC---CCCceEEccccccCCC----CCcccccC-CcccEEEccCcccccc----Ccc
Q 043347          154 TLKTLSLLNNTLSGNLPSSKKLIGL---PNLEGLILGLNNFSGS----IPSFFFNA-SKLYYLELAYNSFSGL----IPK  221 (385)
Q Consensus       154 ~L~~l~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~~----~~~  221 (385)
                      +|+.|++++|.+....+..  +..+   ++|++|++++|.+.+.    ....+..+ ++|+.+++++|.++..    ...
T Consensus        82 ~L~~L~l~~~~~~~~~~~~--~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          82 GLQELDLSDNALGPDGCGV--LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             ceeEEEccCCCCChhHHHH--HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            6777776666554211110  1111   3355666555554311    11122333 4555555555544321    122


Q ss_pred             cccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCcc
Q 043347          222 ALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKE  301 (385)
Q Consensus       222 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~  301 (385)
                      .+..++.|+.|++++|.+.+.  ....+...+..+++|+.|++++|.+.+.....                     ....
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~--~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~---------------------l~~~  216 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDA--GIRALAEGLKANCNLEVLDLNNNGLTDEGASA---------------------LAET  216 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchH--HHHHHHHHHHhCCCCCEEeccCCccChHHHHH---------------------HHHH
Confidence            233444555555555544431  11112233334445555555554443221111                     1122


Q ss_pred             ccCCCCccEEECcCccccCCCccccc-----cCCCCCeEeccCCcccCCC----hhhhhcCCCccEEEccCCcccc
Q 043347          302 IGNLINLTKLSLGYNNLSGSLPITLG-----RLKKLQGLDLQNNKFEGPI----PHEFCHFSRLYKFYLNRNKLSG  368 (385)
Q Consensus       302 ~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~  368 (385)
                      +..+++|++|++++|.+.+.....+.     ..+.|+.|++++|.+++..    ...+..+++|+.+++++|.++.
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            34455566666666655432111111     1245666666666554221    2223334556666666666553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.66  E-value=6.2e-16  Score=147.07  Aligned_cols=245  Identities=27%  Similarity=0.416  Sum_probs=111.1

Q ss_pred             ccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEec
Q 043347            9 LEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSL   88 (385)
Q Consensus         9 l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l   88 (385)
                      .+.|+++++.++ .+|..+.  ..+. .|++++|.++ .+|..++   ++|++|++++|.++ .++..+.  ++|+.|++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~-~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP--EQIT-TLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc--cCCc-EEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            445555555554 3444332  2233 4555555555 5555443   35555555555554 2222221  24555555


Q ss_pred             ccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCccccc
Q 043347           89 SFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGN  168 (385)
Q Consensus        89 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~  168 (385)
                      ++|.+. .+|..+.  .+|+.|++++|.+. .+|..+.  ++|+.|++++|.++. ++..+  .+               
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~---------------  304 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL--PS---------------  304 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc--hh---------------
Confidence            555544 3343331  34555555555444 3333322  245555555554442 12111  12               


Q ss_pred             CCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhh
Q 043347          169 LPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMS  248 (385)
Q Consensus       169 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  248 (385)
                                 .|+.|++++|.+.. .+..+  .++|+.|++++|.++.. +..+  +++|+.|++++|.+...+.    
T Consensus       305 -----------sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~~LP~----  363 (754)
T PRK15370        305 -----------GITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQITVLPE----  363 (754)
T ss_pred             -----------hHHHHHhcCCcccc-CCccc--cccceeccccCCccccC-Chhh--cCcccEEECCCCCCCcCCh----
Confidence                       34444444444432 11111  13455555555555432 2222  2455566666555543321    


Q ss_pred             hhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCcc----ccCCCCccEEECcCcccc
Q 043347          249 LFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKE----IGNLINLTKLSLGYNNLS  319 (385)
Q Consensus       249 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~  319 (385)
                         .+  .+.|+.|++++|.+.. .|..+   +..++.|++++|++. .+|..    ...++.+..+++.+|++.
T Consensus       364 ---~l--p~~L~~LdLs~N~Lt~-LP~~l---~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        364 ---TL--PPTITTLDVSRNALTN-LPENL---PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             ---hh--cCCcCEEECCCCcCCC-CCHhH---HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence               11  1355566666655553 22222   134556666666554 22322    223456666777766665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.65  E-value=1.1e-15  Score=145.41  Aligned_cols=246  Identities=27%  Similarity=0.387  Sum_probs=120.4

Q ss_pred             CCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEcc
Q 043347           82 ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLL  161 (385)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~  161 (385)
                      +...|+++++.+. .+|..+  .+.|+.|++++|.+. .+|..+.  .+|+.|++++|.++. +|..+  ..+|+.|+++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATL--PDTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcC-cCCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhh--hccccEEECc
Confidence            3445555555444 334333  234555555555554 3333332  355555555555542 23222  1345556665


Q ss_pred             CCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccc
Q 043347          162 NNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS  241 (385)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  241 (385)
                      +|.+. .+|..  +  ..+|+.|+++.|.+.. ++..+.  ++|+.|++++|+++.. +..+  .++|+.|++++|.+..
T Consensus       250 ~N~L~-~LP~~--l--~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        250 INRIT-ELPER--L--PSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSLTA  318 (754)
T ss_pred             CCccC-cCChh--H--hCCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccC-cccc--hhhHHHHHhcCCcccc
Confidence            55554 22321  1  1345566666555542 222221  3566666666655532 2222  1355666666665554


Q ss_pred             cchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCC
Q 043347          242 STSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGS  321 (385)
Q Consensus       242 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  321 (385)
                      .+..       +  .++|+.|++++|.+.+ .|..+   +++++.|++++|++. .+|..+  .++|+.|++++|.+. .
T Consensus       319 LP~~-------l--~~sL~~L~Ls~N~Lt~-LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~  381 (754)
T PRK15370        319 LPET-------L--PPGLKTLEAGENALTS-LPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-N  381 (754)
T ss_pred             CCcc-------c--cccceeccccCCcccc-CChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-C
Confidence            3221       1  1456666666665553 23222   246666666666655 233333  246666666666665 3


Q ss_pred             CccccccCCCCCeEeccCCcccCCChhhh----hcCCCccEEEccCCccc
Q 043347          322 LPITLGRLKKLQGLDLQNNKFEGPIPHEF----CHFSRLYKFYLNRNKLS  367 (385)
Q Consensus       322 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~  367 (385)
                      +|..+.  .+|+.|++++|++. .+|..+    ..++.+..|++.+|+++
T Consensus       382 LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        382 LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            443332  24666666666665 333322    22456666666666654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=2.2e-18  Score=128.43  Aligned_cols=155  Identities=30%  Similarity=0.560  Sum_probs=108.1

Q ss_pred             CcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCc
Q 043347            5 NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELS   84 (385)
Q Consensus         5 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~   84 (385)
                      ++..++.|.+++|+++ .+|+.+.++.++. .|++++|+++ .+|..+- +++.|+.|+++.|++. ..+..|+.++.|+
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nle-vln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLE-VLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhh-hhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhh
Confidence            4566677777777776 6777777777777 6777777777 6676664 6777777777777665 6666777777777


Q ss_pred             EEeccccccc-ccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCC
Q 043347           85 RVSLSFNQFT-GRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNN  163 (385)
Q Consensus        85 ~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~  163 (385)
                      +||+++|.+. ..+|..|..+..|+.|.++.|.+. .+|..++++.+|+.|.+.+|.+. .+|..++.++.|++|.+.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            7777776554 345566666777777777777765 66677777777777777777665 45666667777777777776


Q ss_pred             ccc
Q 043347          164 TLS  166 (385)
Q Consensus       164 ~~~  166 (385)
                      ++.
T Consensus       184 rl~  186 (264)
T KOG0617|consen  184 RLT  186 (264)
T ss_pred             eee
Confidence            665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.50  E-value=3.8e-16  Score=116.55  Aligned_cols=155  Identities=30%  Similarity=0.450  Sum_probs=79.3

Q ss_pred             CCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEE
Q 043347           55 GLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEIL  134 (385)
Q Consensus        55 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  134 (385)
                      .+.+++.|.+++|.++ ..+..++.+.+|++|++.+|++. .+|..++.+++|+.|++.-|++. ..|+.|+.+|.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            3444455555555544 33444555555555555555554 44555555555555555544443 455555555555555


Q ss_pred             Eeccccccc-ccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCc
Q 043347          135 RIDQNNLVG-FIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYN  213 (385)
Q Consensus       135 ~l~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  213 (385)
                      ++..|.+.. .+|..|..++.|+.|+++.|.+. .+|..  .+.+.+|+.|.+..|.+. ..+..++.+..|++|++.+|
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~d--vg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPD--VGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChh--hhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            555544332 24444444555555555555544 22322  334555555555555544 34444555666666666666


Q ss_pred             ccc
Q 043347          214 SFS  216 (385)
Q Consensus       214 ~~~  216 (385)
                      .+.
T Consensus       184 rl~  186 (264)
T KOG0617|consen  184 RLT  186 (264)
T ss_pred             eee
Confidence            665

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.32  E-value=1e-12  Score=127.39  Aligned_cols=327  Identities=20%  Similarity=0.271  Sum_probs=146.5

Q ss_pred             eEeecCccccCCChhhhcCCCcccEEEccCCc--ccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeec
Q 043347           37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQ--FKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSF  114 (385)
Q Consensus        37 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  114 (385)
                      +.+.++.+. .++...  .++.|++|-+.++.  +.......|..++.|++||+++|.-.+.+|..++.+.+|++|++.+
T Consensus       528 ~s~~~~~~~-~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~  604 (889)
T KOG4658|consen  528 MSLMNNKIE-HIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD  604 (889)
T ss_pred             EEEeccchh-hccCCC--CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence            444455444 333333  34455555555553  2222233345555666666655544445555555566666666655


Q ss_pred             ccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCC
Q 043347          115 NNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGS  194 (385)
Q Consensus       115 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  194 (385)
                      +.+. .+|..+.++..|.+|++..+......+.....+++|++|.+..............+..+.+|+.+.......  .
T Consensus       605 t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~  681 (889)
T KOG4658|consen  605 TGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--L  681 (889)
T ss_pred             CCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--H
Confidence            5554 555555555566666555544332333333445555555554432111000001122333333333322211  0


Q ss_pred             CCcccccCCccc----EEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCC
Q 043347          195 IPSFFFNASKLY----YLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVD  270 (385)
Q Consensus       195 ~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  270 (385)
                      ....+..+..|.    .+.+.++... .....+..+++|+.|.+.++...+.......-......++++..+.+.++...
T Consensus       682 ~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~  760 (889)
T KOG4658|consen  682 LLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML  760 (889)
T ss_pred             hHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc
Confidence            001111122222    2222222221 12334566777777777777654321111000000001223333333333221


Q ss_pred             CCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCC-CccccccCCCCCeEeccCCcccCCCh--
Q 043347          271 GVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGS-LPITLGRLKKLQGLDLQNNKFEGPIP--  347 (385)
Q Consensus       271 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~--  347 (385)
                       ..+.+. ...++++.|.+..|.....+......+..++++.+..+.+.+. .....+.++++..+.+.+-.+.....  
T Consensus       761 -r~l~~~-~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~  838 (889)
T KOG4658|consen  761 -RDLTWL-LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEE  838 (889)
T ss_pred             -cccchh-hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhc
Confidence             111111 2237888888888877766665555566666655555555433 23344555555555554433221111  


Q ss_pred             -hhhhcCCCccEEEccCC-cccccCCC
Q 043347          348 -HEFCHFSRLYKFYLNRN-KLSGSIPS  372 (385)
Q Consensus       348 -~~~~~~~~L~~L~l~~~-~~~~~~~~  372 (385)
                       .....+|.+.++.+.+| ......|+
T Consensus       839 ~p~l~~~P~~~~~~i~~~~~~~~~~~~  865 (889)
T KOG4658|consen  839 CPKLGKLPLLSTLTIVGCEEKLKEYPD  865 (889)
T ss_pred             CcccccCccccccceeccccceeecCC
Confidence             12345777777888776 33333444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.29  E-value=8.3e-14  Score=115.73  Aligned_cols=237  Identities=23%  Similarity=0.220  Sum_probs=129.5

Q ss_pred             cccceeceeEeecCccccCC---ChhhhcCCCcccEEEccCCcccCc-----------CCCCccCCCCCcEEeccccccc
Q 043347           29 NLSSISTGLDFSNNSLTGSF---PDDMCEGLPRLKGLYVSYNQFKGP-----------IPNNLWHCKELSRVSLSFNQFT   94 (385)
Q Consensus        29 ~~~~l~~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~-----------~~~~~~~~~~L~~L~l~~~~~~   94 (385)
                      ...++. .+++++|.+....   ......+.++|+..++++-. ++.           +..++..+++|+++++|+|.+.
T Consensus        28 ~~~s~~-~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   28 PMDSLT-KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             ccCceE-EEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            344445 5777777665211   12223355667777766531 111           2234456778888888888765


Q ss_pred             ccCCCC----ccCcccccEEEeecccccCCCCcc-------------cCCCcCCcEEEeccccccccc----CccccCCC
Q 043347           95 GRIPRD----LGNSTKLKLLYLSFNNLIGEIPQE-------------IGSLRNLEILRIDQNNLVGFI----PDTIFNMS  153 (385)
Q Consensus        95 ~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~  153 (385)
                      ...+..    +..+..|++|.+.+|++.......             .+.-++|+.+....|++....    ...+..++
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence            444433    456778888888887765332222             233456777777666654332    23344556


Q ss_pred             CCcEEEccCCcccc--cCCCCcccCCCCCCceEEccccccCC----CCCcccccCCcccEEEccCccccccCcccc----
Q 043347          154 TLKTLSLLNNTLSG--NLPSSKKLIGLPNLEGLILGLNNFSG----SIPSFFFNASKLYYLELAYNSFSGLIPKAL----  223 (385)
Q Consensus       154 ~L~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----  223 (385)
                      .|+.+.+..|.+..  ..-....+.++++|+.|++.+|.++.    .....+...++|+.+++++|.+......++    
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            77777776666531  10111235566777777777666542    122344455666677776666654433322    


Q ss_pred             -cCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCC
Q 043347          224 -GQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPV  269 (385)
Q Consensus       224 -~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  269 (385)
                       ...|.|+.+.+.+|.++......  +.......+.|..|++++|.+
T Consensus       266 ~~~~p~L~vl~l~gNeIt~da~~~--la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEITRDAALA--LAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hccCCCCceeccCcchhHHHHHHH--HHHHHhcchhhHHhcCCcccc
Confidence             23566677777666655433222  223344456666666666655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.28  E-value=3.3e-13  Score=112.24  Aligned_cols=250  Identities=21%  Similarity=0.211  Sum_probs=142.4

Q ss_pred             ccCCCCCcEEeccccccccc----CCCCccCcccccEEEeecc---cccCCCCcc-------cCCCcCCcEEEecccccc
Q 043347           77 LWHCKELSRVSLSFNQFTGR----IPRDLGNSTKLKLLYLSFN---NLIGEIPQE-------IGSLRNLEILRIDQNNLV  142 (385)
Q Consensus        77 ~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~---~~~~~~~~~-------~~~l~~L~~L~l~~~~~~  142 (385)
                      +.....+..+++++|.+...    +...+...+.|+.-+++.-   +....+|.+       +..+++|+.+++++|-+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            34566777778887766522    2233455566777666542   222233333       234567777777777655


Q ss_pred             cccCcc----ccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCcccccc
Q 043347          143 GFIPDT----IFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGL  218 (385)
Q Consensus       143 ~~~~~~----~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  218 (385)
                      ...+..    +..+.+|+.|.+.+|.+...-...  +.  ..|.++.         .....+.-+.|+.+....|.+...
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~--l~--~al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGR--LG--RALFELA---------VNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHH--HH--HHHHHHH---------HHhccCCCcceEEEEeeccccccc
Confidence            443332    335666777777666653210000  00  0111111         112234456788888888776544


Q ss_pred             C----cccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcc----cccccceeEEEee
Q 043347          219 I----PKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSI----GNLSVSVEEIYMY  290 (385)
Q Consensus       219 ~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~l~~L~l~  290 (385)
                      .    ...|...+.|+.+.++.|.+...+.  .....++.+|++|+.|++.+|.++......+    +.+ +.++++++.
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~--~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~-~~L~El~l~  249 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGV--TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW-PHLRELNLG  249 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchh--HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc-chheeeccc
Confidence            3    3455667888888888887764432  3456788889999999998887765433322    233 456677777


Q ss_pred             ccccCCCCCccc-----cCCCCccEEECcCccccCC----CccccccCCCCCeEeccCCcc
Q 043347          291 KCNIHGRIPKEI-----GNLINLTKLSLGYNNLSGS----LPITLGRLKKLQGLDLQNNKF  342 (385)
Q Consensus       291 ~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~  342 (385)
                      +|.+......++     ...|+|+.+.+.+|.++..    +..++...+.|..|++++|.+
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            766654433222     2356777777777766532    223444456677777777776

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.20  E-value=1.3e-11  Score=119.68  Aligned_cols=316  Identities=21%  Similarity=0.272  Sum_probs=194.9

Q ss_pred             cCcccEEEecCccccCCCCcccccccceeceeEeecCc--cccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCC
Q 043347            6 LAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNS--LTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKEL   83 (385)
Q Consensus         6 ~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L   83 (385)
                      -...|+.++.++.+. .++.+. +++.+. +|-+..+.  +. .++.++|..+|.|++||+++|.--+.+|..++.+-+|
T Consensus       522 ~~~~rr~s~~~~~~~-~~~~~~-~~~~L~-tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIE-HIAGSS-ENPKLR-TLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL  597 (889)
T ss_pred             hhheeEEEEeccchh-hccCCC-CCCccc-eEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence            346688888888876 444433 444666 57777775  56 8888889899999999999987666899999999999


Q ss_pred             cEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEeccccc--ccccCccccCCCCCcEEEcc
Q 043347           84 SRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNL--VGFIPDTIFNMSTLKTLSLL  161 (385)
Q Consensus        84 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~~l~~L~~l~l~  161 (385)
                      |+|+++++.+. .+|..+.++..|.+|++..+......+.....+.+|++|.+.....  +......+..+.+|+.+...
T Consensus       598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            99999999988 8999999999999999998876556666677799999999876541  11122334456666666554


Q ss_pred             CCcccccCCCCcccCCCCCCc----eEEccccccCCCCCcccccCCcccEEEccCccccccCccccc-----C-CCCccE
Q 043347          162 NNTLSGNLPSSKKLIGLPNLE----GLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALG-----Q-LRNLER  231 (385)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~-~~~L~~  231 (385)
                      ..... ..   ..+.....|.    .+.+..+... .....+..+++++.|.+.++.+.+.......     . ++++..
T Consensus       677 ~~s~~-~~---e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~  751 (889)
T KOG4658|consen  677 ISSVL-LL---EDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSK  751 (889)
T ss_pred             cchhH-hH---hhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHH
Confidence            33320 00   0011222222    2222222211 3345567778888888888877543222221     1 334444


Q ss_pred             EEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCC-CCccccCCCCccE
Q 043347          232 LGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGR-IPKEIGNLINLTK  310 (385)
Q Consensus       232 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~~~~~~~L~~  310 (385)
                      +.+.++.....       +.+..-.++|+.|++..+...+.+.+..... ..+..+.+..+.+.+. .....+.++++..
T Consensus       752 ~~~~~~~~~r~-------l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~-~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~  823 (889)
T KOG4658|consen  752 VSILNCHMLRD-------LTWLLFAPHLTSLSLVSCRLLEDIIPKLKAL-LELKELILPFNKLEGLRMLCSLGGLPQLYW  823 (889)
T ss_pred             HHhhccccccc-------cchhhccCcccEEEEecccccccCCCHHHHh-hhcccEEecccccccceeeecCCCCceeEe
Confidence            44444432221       1233445889999999887766655555444 4555555666655544 2333455555555


Q ss_pred             EECcCccccCCCcc----ccccCCCCCeEeccCC
Q 043347          311 LSLGYNNLSGSLPI----TLGRLKKLQGLDLQNN  340 (385)
Q Consensus       311 L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~  340 (385)
                      +.+..-.+. .+..    -...+|.+..+.+.+|
T Consensus       824 ~~l~~~~l~-~~~ve~~p~l~~~P~~~~~~i~~~  856 (889)
T KOG4658|consen  824 LPLSFLKLE-ELIVEECPKLGKLPLLSTLTIVGC  856 (889)
T ss_pred             cccCccchh-heehhcCcccccCccccccceecc
Confidence            555544322 1111    1234555666666664

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=3.4e-12  Score=109.29  Aligned_cols=188  Identities=22%  Similarity=0.183  Sum_probs=133.8

Q ss_pred             cCCCCCCceEEccccccCCCCC-cccccCCcccEEEccCcccccc--CcccccCCCCccEEEecCCcccccchhhhhhhH
Q 043347          175 LIGLPNLEGLILGLNNFSGSIP-SFFFNASKLYYLELAYNSFSGL--IPKALGQLRNLERLGLQSNYLTSSTSELMSLFS  251 (385)
Q Consensus       175 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  251 (385)
                      -..+..|+++.+..++...... .....|++++.|++++|-+...  .......+|+|+.|+++.|++.......     
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~-----  191 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN-----  191 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-----
Confidence            3466788888998887764332 4667789999999999876533  2345578899999999998876543321     


Q ss_pred             hhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCc--cccccC
Q 043347          252 ALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLP--ITLGRL  329 (385)
Q Consensus       252 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~  329 (385)
                      .-..+++++.|.++.|.++-....++...+|+++.|.+..|...........-+..|++|+|++|.+. ..+  ...+.+
T Consensus       192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l  270 (505)
T KOG3207|consen  192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTL  270 (505)
T ss_pred             chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccc
Confidence            12256788999999998875555555556689999999998533222222344668999999999887 333  455778


Q ss_pred             CCCCeEeccCCcccCCChhh------hhcCCCccEEEccCCcccc
Q 043347          330 KKLQGLDLQNNKFEGPIPHE------FCHFSRLYKFYLNRNKLSG  368 (385)
Q Consensus       330 ~~L~~L~l~~~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~  368 (385)
                      +.|..|+++.|.+...-...      -..+++|+.|+++.|++.+
T Consensus       271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~  315 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD  315 (505)
T ss_pred             cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence            89999999998776432211      2458999999999999853

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=3.2e-12  Score=109.44  Aligned_cols=212  Identities=21%  Similarity=0.217  Sum_probs=152.3

Q ss_pred             cCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCC--CCcccccCCcccEEEccCccccccCc-ccccCC
Q 043347          150 FNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGS--IPSFFFNASKLYYLELAYNSFSGLIP-KALGQL  226 (385)
Q Consensus       150 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~  226 (385)
                      .++.+|+++.+.++.+.. .+.......+++++.|+++.|-+..+  +......+|+|+.|+++.|.+..... ..-..+
T Consensus       118 sn~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            367889999998877652 22213366889999999999877643  34556789999999999998753322 222467


Q ss_pred             CCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCC-ccccCC
Q 043347          227 RNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIP-KEIGNL  305 (385)
Q Consensus       227 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~  305 (385)
                      ++|+.|.++.|.++. .+    ....+..+|.|+.|++.+|..-... ..-...+..+++|++++|++.+... ...+.+
T Consensus       197 ~~lK~L~l~~CGls~-k~----V~~~~~~fPsl~~L~L~~N~~~~~~-~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l  270 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSW-KD----VQWILLTFPSLEVLYLEANEIILIK-ATSTKILQTLQELDLSNNNLIDFDQGYKVGTL  270 (505)
T ss_pred             hhhheEEeccCCCCH-HH----HHHHHHhCCcHHHhhhhccccccee-cchhhhhhHHhhccccCCcccccccccccccc
Confidence            899999999999883 22    4456778999999999999522111 1112233689999999999875332 345678


Q ss_pred             CCccEEECcCccccCC-Cccc-----cccCCCCCeEeccCCcccC-CChhhhhcCCCccEEEccCCcccc
Q 043347          306 INLTKLSLGYNNLSGS-LPIT-----LGRLKKLQGLDLQNNKFEG-PIPHEFCHFSRLYKFYLNRNKLSG  368 (385)
Q Consensus       306 ~~L~~L~l~~~~~~~~-~~~~-----~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~  368 (385)
                      |.|..|+++.+.+++. .|++     ...+++|++|++..|++.+ .....+..+++|+.|.+..+.++.
T Consensus       271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            9999999999988753 2222     2457899999999999952 222345568899999998887764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=1e-10  Score=91.23  Aligned_cols=126  Identities=21%  Similarity=0.188  Sum_probs=31.3

Q ss_pred             CCCCccEEEecCCcccccchhhhhhhHhhh-cccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCcccc
Q 043347          225 QLRNLERLGLQSNYLTSSTSELMSLFSALV-NCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIG  303 (385)
Q Consensus       225 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~  303 (385)
                      ++..+++|++.++.++..        ..+. .+.+|+.|++++|.+....  .+..+ ++++.|++++|.+.+.......
T Consensus        17 n~~~~~~L~L~~n~I~~I--------e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L-~~L~~L~L~~N~I~~i~~~l~~   85 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--------ENLGATLDKLEVLDLSNNQITKLE--GLPGL-PRLKTLDLSNNRISSISEGLDK   85 (175)
T ss_dssp             ---------------------------S--TT-TT--EEE-TTS--S--T--T-----TT--EEE--SS---S-CHHHHH
T ss_pred             cccccccccccccccccc--------cchhhhhcCCCEEECCCCCCcccc--CccCh-hhhhhcccCCCCCCccccchHH
Confidence            344566677777666542        2233 3456666666666655321  12222 4555555555555532221112


Q ss_pred             CCCCccEEECcCccccCC-CccccccCCCCCeEeccCCcccCCCh---hhhhcCCCccEEEc
Q 043347          304 NLINLTKLSLGYNNLSGS-LPITLGRLKKLQGLDLQNNKFEGPIP---HEFCHFSRLYKFYL  361 (385)
Q Consensus       304 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l  361 (385)
                      .+|+|++|++++|++.+. ....+..+++|+.|++.+|+++....   ..+..+|+|+.||-
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            355555555555555421 11233445555555555555543211   12334555555443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.01  E-value=7.5e-11  Score=96.56  Aligned_cols=133  Identities=25%  Similarity=0.314  Sum_probs=98.7

Q ss_pred             CCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcc
Q 043347          126 GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKL  205 (385)
Q Consensus       126 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  205 (385)
                      ..+..|+++++++|.++ ...+.+.-.|.++.|++++|.+....    .+..+++|+.|++++|.++ ....+-..+.++
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~----nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ----NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI  354 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh----hhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence            34568888888888876 44556667788888888888876432    2567888888888888776 344555667888


Q ss_pred             cEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCC
Q 043347          206 YYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDG  271 (385)
Q Consensus       206 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  271 (385)
                      ++|.+++|.+.+.  .-+..+-+|..|++++|++.+...     .+.++++|+|+.+.+.+|++.+
T Consensus       355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~lde-----V~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDE-----VNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHH-----hcccccccHHHHHhhcCCCccc
Confidence            8888888877643  345667788888888888876543     5678888888888888887764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.98  E-value=9e-10  Score=85.92  Aligned_cols=127  Identities=27%  Similarity=0.276  Sum_probs=37.5

Q ss_pred             CCcEEEecccccccccCcccc-CCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEE
Q 043347          130 NLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYL  208 (385)
Q Consensus       130 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  208 (385)
                      ++++|++.++.+...  +.+. .+.+|+.|++++|.+... .   .+..++.|+.|+++.|.++.........+++|++|
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~---~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E---GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T---T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c---CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            445555555544422  2232 344555555555555422 1   13445556666666665553221122345666666


Q ss_pred             EccCccccccC-cccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEcc
Q 043347          209 ELAYNSFSGLI-PKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLA  265 (385)
Q Consensus       209 ~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  265 (385)
                      ++++|++.+.. ...+..+++|+.|++.+|++.....-   ....+..+|+|+.|+-.
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~Y---R~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNY---RLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTH---HHHHHHH-TT-SEETTE
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhH---HHHHHHHcChhheeCCE
Confidence            66666664321 23455666777777777766543221   22345666777766644

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.95  E-value=3.1e-11  Score=106.91  Aligned_cols=212  Identities=27%  Similarity=0.417  Sum_probs=146.2

Q ss_pred             EEecCccccCCCCccccc--ccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecc
Q 043347           12 LVLNNNLLTGTIPASIFN--LSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLS   89 (385)
Q Consensus        12 L~l~~~~~~~~~~~~~~~--~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~   89 (385)
                      |.|++-++. .+|..-..  +.... ..+++.|++. .+|.+++ .+..|+.+.+..|.+. .++..+..+..|.+++++
T Consensus        55 l~Ls~rrlk-~fpr~a~~~~ltdt~-~aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls  129 (722)
T KOG0532|consen   55 LLLSGRRLK-EFPRGAASYDLTDTV-FADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIR-TIPEAICNLEALTFLDLS  129 (722)
T ss_pred             cccccchhh-cCCCccccccccchh-hhhccccccc-cCchHHH-HHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhc
Confidence            445555554 45544333  22223 5788888888 8888887 6788888888888776 666678888888888888


Q ss_pred             cccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccC
Q 043347           90 FNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNL  169 (385)
Q Consensus        90 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~  169 (385)
                      .|++. ..|..++.++ |+.|.+.+|+++ .+|..++..+.|.+|+.+.|.+. .++..+..+.+|+.+.+..|.+.. +
T Consensus       130 ~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-l  204 (722)
T KOG0532|consen  130 SNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-L  204 (722)
T ss_pred             cchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-C
Confidence            88877 7777776654 677778888777 77888888888888888888876 455567778888888888877663 3


Q ss_pred             CCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccc--cCCCCccEEEecCC
Q 043347          170 PSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKAL--GQLRNLERLGLQSN  237 (385)
Q Consensus       170 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~  237 (385)
                      |..  +. .-.|..|+++.|++. .++..|.+++.|++|.+.+|.+..-.++..  +...-.|.|++.-|
T Consensus       205 p~E--l~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  205 PEE--LC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             CHH--Hh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            322  22 223667788888777 567777888888888888887753322211  33444566666655

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.90  E-value=5.5e-10  Score=91.58  Aligned_cols=224  Identities=21%  Similarity=0.207  Sum_probs=134.5

Q ss_pred             CcccccEEEeeccc--c------cCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcc
Q 043347          103 NSTKLKLLYLSFNN--L------IGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKK  174 (385)
Q Consensus       103 ~l~~L~~L~l~~~~--~------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~  174 (385)
                      -+..|.+|..++..  +      ...+|..+.-+.+|+.+.++.|.-..+ ..-...-+.|+++.+....+... +.   
T Consensus       180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~~-~~---  254 (490)
T KOG1259|consen  180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQDV-PS---  254 (490)
T ss_pred             hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeeccccccc-cc---
Confidence            35667777776542  1      112333444567777777777654322 11122446777777765443311 10   


Q ss_pred             cCCCCCCceEEccc-cccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhh
Q 043347          175 LIGLPNLEGLILGL-NNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSAL  253 (385)
Q Consensus       175 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  253 (385)
                      +-....+....... ....+.........+.|+++++++|.++. ..+...-.|.++.|+++.|.+..+        +.+
T Consensus       255 l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--------~nL  325 (490)
T KOG1259|consen  255 LLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--------QNL  325 (490)
T ss_pred             ccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh-hhhhhhhccceeEEeccccceeee--------hhh
Confidence            10111111111000 00111112222334678889999998874 355666778999999999988764        457


Q ss_pred             hcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCC-CccccccCCCC
Q 043347          254 VNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGS-LPITLGRLKKL  332 (385)
Q Consensus       254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L  332 (385)
                      +.+++|..|++++|.++. ...|-..+ .+++.|.++.|.+.+  ...++.+.+|..|++++|++... -...++++|.|
T Consensus       326 a~L~~L~~LDLS~N~Ls~-~~Gwh~KL-GNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCL  401 (490)
T KOG1259|consen  326 AELPQLQLLDLSGNLLAE-CVGWHLKL-GNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCL  401 (490)
T ss_pred             hhcccceEeecccchhHh-hhhhHhhh-cCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHH
Confidence            888899999999987663 22233333 688888888887742  33466777888899998888632 22366788888


Q ss_pred             CeEeccCCcccC
Q 043347          333 QGLDLQNNKFEG  344 (385)
Q Consensus       333 ~~L~l~~~~~~~  344 (385)
                      +.+.+.+|.+..
T Consensus       402 E~l~L~~NPl~~  413 (490)
T KOG1259|consen  402 ETLRLTGNPLAG  413 (490)
T ss_pred             HHHhhcCCCccc
Confidence            888888888873

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.89  E-value=1e-09  Score=70.30  Aligned_cols=61  Identities=33%  Similarity=0.467  Sum_probs=37.5

Q ss_pred             CCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcc
Q 043347          306 INLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKL  366 (385)
Q Consensus       306 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  366 (385)
                      |+|+.|++++|.+....+..|..+++|+.|++++|.++...+..|..+++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3566666666666644445566666666666666666655555666666666666666653

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.88  E-value=3e-09  Score=96.58  Aligned_cols=176  Identities=33%  Similarity=0.444  Sum_probs=73.0

Q ss_pred             CCCcEEecccccccccCCCCccCcc-cccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEE
Q 043347           81 KELSRVSLSFNQFTGRIPRDLGNST-KLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLS  159 (385)
Q Consensus        81 ~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~  159 (385)
                      +.++.|++.++.+. .++.....+. +|+.|++.+|.+. .++..+..+++|+.|++++|++.+. +......+.|+.++
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhh-hhhhhhhhhhhhee
Confidence            44444444444444 2333333332 4444444444443 2223344444444444444444321 22122344444444


Q ss_pred             ccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcc
Q 043347          160 LLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL  239 (385)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  239 (385)
                      +++|.+.. +|..  ......|+++.++.+... .....+....++..+.+.+|++... +..++.+++++.|++++|.+
T Consensus       193 ls~N~i~~-l~~~--~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         193 LSGNKISD-LPPE--IELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQI  267 (394)
T ss_pred             ccCCcccc-Cchh--hhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceeccccccc
Confidence            44444432 1111  012223444444444221 1222333344444444444444321 23344445555555555555


Q ss_pred             cccchhhhhhhHhhhcccCceEEEccCCCCCCC
Q 043347          240 TSSTSELMSLFSALVNCKSLKVIVLAENPVDGV  272 (385)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  272 (385)
                      ....        .+....+++.|+++++.+...
T Consensus       268 ~~i~--------~~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         268 SSIS--------SLGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             cccc--------cccccCccCEEeccCcccccc
Confidence            4431        144445555555555554433

>PLN03150 hypothetical protein; Provisional

Probab=98.87  E-value=6.5e-09  Score=98.95  Aligned_cols=91  Identities=33%  Similarity=0.615  Sum_probs=54.3

Q ss_pred             eeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccC
Q 043347          284 VEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNR  363 (385)
Q Consensus       284 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  363 (385)
                      ++.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+..|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            55556666666555555555566666666666666555555555666666666666666655565565666666666666


Q ss_pred             CcccccCCCcc
Q 043347          364 NKLSGSIPSCL  374 (385)
Q Consensus       364 ~~~~~~~~~~~  374 (385)
                      |++++.+|..+
T Consensus       500 N~l~g~iP~~l  510 (623)
T PLN03150        500 NSLSGRVPAAL  510 (623)
T ss_pred             CcccccCChHH
Confidence            66655555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.87  E-value=3.2e-09  Score=96.37  Aligned_cols=194  Identities=35%  Similarity=0.453  Sum_probs=140.2

Q ss_pred             eEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCC-CCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347           37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK-ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN  115 (385)
Q Consensus        37 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  115 (385)
                      +....+.+. .-...+. ..+.++.+++.++.+. .++....... +|+.|+++++.+. ..+..+..++.|+.|++.+|
T Consensus        98 l~~~~~~~~-~~~~~~~-~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          98 LDLNLNRLR-SNISELL-ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeccccccc-cCchhhh-cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            666666663 2222222 4577899999888887 4555555664 8999999999887 56667888999999999999


Q ss_pred             cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC
Q 043347          116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI  195 (385)
Q Consensus       116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  195 (385)
                      ++. .++...+..+.|+.|+++++.+. .++..+.....|+++.+++|.......   .+..+.++..+.+..+.+.. .
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~---~~~~~~~l~~l~l~~n~~~~-~  247 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLS---SLSNLKNLSGLELSNNKLED-L  247 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecch---hhhhcccccccccCCceeee-c
Confidence            887 55665557889999999999887 344444566678999998885332211   14566777777777776652 2


Q ss_pred             CcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCccccc
Q 043347          196 PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSS  242 (385)
Q Consensus       196 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  242 (385)
                      ...++.++.+++|++++|.++....  ++...+++.++++++.+...
T Consensus       248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             cchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence            5667778889999999998886543  78889999999999877654

>PLN03150 hypothetical protein; Provisional

Probab=98.87  E-value=4.6e-09  Score=99.96  Aligned_cols=113  Identities=28%  Similarity=0.511  Sum_probs=101.5

Q ss_pred             CceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEec
Q 043347          258 SLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDL  337 (385)
Q Consensus       258 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  337 (385)
                      .++.|++++|.+.+..|..+..+ ++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|+.+..+++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCC-CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            37889999999999999888887 89999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccCCChhhhhc-CCCccEEEccCCcccccCC
Q 043347          338 QNNKFEGPIPHEFCH-FSRLYKFYLNRNKLSGSIP  371 (385)
Q Consensus       338 ~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~  371 (385)
                      ++|.+++..|..+.. ..++..+++.+|+..+..|
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            999999999998876 4577889999987554444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.85  E-value=8.7e-11  Score=104.14  Aligned_cols=175  Identities=31%  Similarity=0.415  Sum_probs=132.6

Q ss_pred             CCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcc
Q 043347          177 GLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNC  256 (385)
Q Consensus       177 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  256 (385)
                      .+..-...+++.|++. ..+..+..+-.|+.+.+..|-+. ..+..++.+..|+.++++.|.+...+.       .++.+
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~-------~lC~l  143 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPD-------GLCDL  143 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCCh-------hhhcC
Confidence            4444556677778776 45555566677888888877776 356677888889999999888877544       33333


Q ss_pred             cCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEe
Q 043347          257 KSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLD  336 (385)
Q Consensus       257 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  336 (385)
                       -|+.|-+++|+++ ..|+.+. ....+..|+.+.|++. ..|..++.+.+|+.|.++.|.+. .+|+.+..+ .|.+||
T Consensus       144 -pLkvli~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lD  217 (722)
T KOG0532|consen  144 -PLKVLIVSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLD  217 (722)
T ss_pred             -cceeEEEecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeee
Confidence             4788888888887 4566666 4478888999998887 46666788889999999988887 566666644 488899


Q ss_pred             ccCCcccCCChhhhhcCCCccEEEccCCccc
Q 043347          337 LQNNKFEGPIPHEFCHFSRLYKFYLNRNKLS  367 (385)
Q Consensus       337 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  367 (385)
                      ++.|++. .+|..|.++..|++|-+++|++.
T Consensus       218 fScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  218 FSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             cccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            9999998 88888999999999999999885

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.79  E-value=8.2e-09  Score=66.11  Aligned_cols=54  Identities=37%  Similarity=0.490  Sum_probs=22.0

Q ss_pred             eEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccc
Q 043347           37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFN   91 (385)
Q Consensus        37 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   91 (385)
                      |++++|+++ .+|.++|..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus         6 L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    6 LDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             EEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             EECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            444444444 334444434444444444444443333333444444444444433

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=1.5e-10  Score=94.64  Aligned_cols=179  Identities=18%  Similarity=0.138  Sum_probs=124.5

Q ss_pred             CCceEEccccccCC-CCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCc-ccccchhhhhhhHhhhccc
Q 043347          180 NLEGLILGLNNFSG-SIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNY-LTSSTSELMSLFSALVNCK  257 (385)
Q Consensus       180 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~  257 (385)
                      .|++++++...++. .....+..|++|+.|.+.++.+.+.....+....+|+.++++.+. +++..     ....+.+|+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~-----~~ll~~scs  260 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA-----LQLLLSSCS  260 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH-----HHHHHHhhh
Confidence            47888888776652 234567888899999999988887766777788899999998763 33321     234577889


Q ss_pred             CceEEEccCCCCCCC-CCCcccccccceeEEEeeccccCC--C-CCccccCCCCccEEECcCccc-cCCCccccccCCCC
Q 043347          258 SLKVIVLAENPVDGV-LPSSIGNLSVSVEEIYMYKCNIHG--R-IPKEIGNLINLTKLSLGYNNL-SGSLPITLGRLKKL  332 (385)
Q Consensus       258 ~L~~L~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~~~~~~--~-~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L  332 (385)
                      .|..|++++|..... ....+....++++.|+++++.-.-  . .......+|+|.+|++++|.. +......+..++-|
T Consensus       261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L  340 (419)
T KOG2120|consen  261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL  340 (419)
T ss_pred             hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence            999999998866433 222344555788899998884321  1 112235689999999998754 33334455678889


Q ss_pred             CeEeccCCcccCCChhhh---hcCCCccEEEccCCc
Q 043347          333 QGLDLQNNKFEGPIPHEF---CHFSRLYKFYLNRNK  365 (385)
Q Consensus       333 ~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~  365 (385)
                      ++|.++.|+..  .|..+   ...|+|..|++-+|-
T Consensus       341 ~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  341 QHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence            99999999764  45543   347899999998873

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=1.7e-10  Score=94.31  Aligned_cols=160  Identities=18%  Similarity=0.099  Sum_probs=102.3

Q ss_pred             ccccEEEeecccccCC-CCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCce
Q 043347          105 TKLKLLYLSFNNLIGE-IPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEG  183 (385)
Q Consensus       105 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~  183 (385)
                      ..|++++++...++.. +...++.|.+|+.+.+.+.++.+.....++.-..|+.++++.+.-.........+.++..|.+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            3588888877655422 222356788888888888888777777777778888888887653222111223667888888


Q ss_pred             EEccccccCCCC-Cccccc-CCcccEEEccCccc---cccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccC
Q 043347          184 LILGLNNFSGSI-PSFFFN-ASKLYYLELAYNSF---SGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKS  258 (385)
Q Consensus       184 L~l~~~~~~~~~-~~~~~~-~~~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  258 (385)
                      |+++||...... ...+.+ -++++.|+++|+.-   ..........+|++.+|++++|..-..+     .++.+..++.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-----~~~~~~kf~~  339 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-----CFQEFFKFNY  339 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch-----HHHHHHhcch
Confidence            888888754221 111221 35788888887531   1112223357888888888887533221     5677888888


Q ss_pred             ceEEEccCCCC
Q 043347          259 LKVIVLAENPV  269 (385)
Q Consensus       259 L~~L~l~~~~~  269 (385)
                      |++|+++.|..
T Consensus       340 L~~lSlsRCY~  350 (419)
T KOG2120|consen  340 LQHLSLSRCYD  350 (419)
T ss_pred             heeeehhhhcC
Confidence            88888887743

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=5.3e-09  Score=85.77  Aligned_cols=183  Identities=20%  Similarity=0.131  Sum_probs=88.8

Q ss_pred             CCcEEecccccccccCCC-Cc-cCcccccEEEeecccccC--CCCcccCCCcCCcEEEecccccccccCccc-cCCCCCc
Q 043347           82 ELSRVSLSFNQFTGRIPR-DL-GNSTKLKLLYLSFNNLIG--EIPQEIGSLRNLEILRIDQNNLVGFIPDTI-FNMSTLK  156 (385)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~-~l-~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~  156 (385)
                      .++.+.+.++.+...... .+ ..++.++.+++.+|.+.+  .+...+.++|+|+.|+++.|.+...+. .+ ....+|+
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~  124 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLR  124 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceE
Confidence            444455555544422111 11 245677777777776654  233334567777777777776653322 22 3455677


Q ss_pred             EEEccCCcccccCCCCcccCCCCCCceEEccccccCCC--CCccccc-CCcccEEEccCcccccc--CcccccCCCCccE
Q 043347          157 TLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGS--IPSFFFN-ASKLYYLELAYNSFSGL--IPKALGQLRNLER  231 (385)
Q Consensus       157 ~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~-~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~  231 (385)
                      ++-+.+..+.+...... +..+|.+++++|+.|.....  ..+.... .+.+.++++..|.....  ....-..+|++..
T Consensus       125 ~lVLNgT~L~w~~~~s~-l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s  203 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSS-LDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS  203 (418)
T ss_pred             EEEEcCCCCChhhhhhh-hhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence            77777766654333222 55667777777776644311  1111111 23455555554433110  0001122455566


Q ss_pred             EEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCC
Q 043347          232 LGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDG  271 (385)
Q Consensus       232 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  271 (385)
                      +.+..|.+.....     ...+..+|.+..|+++.+.+..
T Consensus       204 v~v~e~PlK~~s~-----ek~se~~p~~~~LnL~~~~ids  238 (418)
T KOG2982|consen  204 VFVCEGPLKTESS-----EKGSEPFPSLSCLNLGANNIDS  238 (418)
T ss_pred             eeeecCcccchhh-----cccCCCCCcchhhhhccccccc
Confidence            6666555544322     1233344444455555554443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=3.3e-09  Score=86.91  Aligned_cols=237  Identities=18%  Similarity=0.131  Sum_probs=125.4

Q ss_pred             CcccccccceeceeEeecCccccCCCh--hhhcCCCcccEEEccCCcccC--cCCCCccCCCCCcEEecccccccccCCC
Q 043347           24 PASIFNLSSISTGLDFSNNSLTGSFPD--DMCEGLPRLKGLYVSYNQFKG--PIPNNLWHCKELSRVSLSFNQFTGRIPR   99 (385)
Q Consensus        24 ~~~~~~~~~l~~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~   99 (385)
                      +..++....+. .+.+.++.|. ...+  .+...++.++.+++.+|.++.  .+...+.++|.|+.|+++.|++...+. 
T Consensus        38 ~~~v~s~ra~e-llvln~~~id-~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-  114 (418)
T KOG2982|consen   38 YLGVSSLRALE-LLVLNGSIID-NEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-  114 (418)
T ss_pred             eeeeccccchh-hheecCCCCC-cchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-
Confidence            33343444343 4556666665 3322  233457788899998888762  344456788899999998887763222 


Q ss_pred             Cc-cCcccccEEEeecccccC-CCCcccCCCcCCcEEEecccccccc--cCccccCC-CCCcEEEccCCcccccCCCCcc
Q 043347          100 DL-GNSTKLKLLYLSFNNLIG-EIPQEIGSLRNLEILRIDQNNLVGF--IPDTIFNM-STLKTLSLLNNTLSGNLPSSKK  174 (385)
Q Consensus       100 ~l-~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l-~~L~~l~l~~~~~~~~~~~~~~  174 (385)
                      .+ ....+|++|-+.|+.+.= .....+..+|.++.|+++.|.+...  ..+.+... +.+.++....|...........
T Consensus       115 ~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l  194 (418)
T KOG2982|consen  115 SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKL  194 (418)
T ss_pred             cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhH
Confidence            22 356788888888876532 2233355778888888887744322  12223322 2555665555543211100000


Q ss_pred             cCCCCCCceEEccccccCCC-CCcccccCCcccEEEccCcccccc-CcccccCCCCccEEEecCCcccccchhhhhhhHh
Q 043347          175 LIGLPNLEGLILGLNNFSGS-IPSFFFNASKLYYLELAYNSFSGL-IPKALGQLRNLERLGLQSNYLTSSTSELMSLFSA  252 (385)
Q Consensus       175 ~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  252 (385)
                      -.-+|++..+-+..+.+.+. ....+...+.+.-|+++.+++... ..+.+.+++.|..|.++++++.+-........-.
T Consensus       195 ~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~ll  274 (418)
T KOG2982|consen  195 SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLL  274 (418)
T ss_pred             HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEE
Confidence            12345555555555544321 122334445555566665555322 2345556666666666666554432222222233


Q ss_pred             hhcccCceEEE
Q 043347          253 LVNCKSLKVIV  263 (385)
Q Consensus       253 ~~~~~~L~~L~  263 (385)
                      ++.+++++.|+
T Consensus       275 IaRL~~v~vLN  285 (418)
T KOG2982|consen  275 IARLTKVQVLN  285 (418)
T ss_pred             EeeccceEEec
Confidence            45555555554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.60  E-value=4e-10  Score=96.35  Aligned_cols=85  Identities=18%  Similarity=0.032  Sum_probs=36.8

Q ss_pred             cccEEEeecccccC-CCCc-ccCCCcCCcEEEeccccc-ccccCccc-cCCCCCcEEEccCCcccccCCCCcccCCCCCC
Q 043347          106 KLKLLYLSFNNLIG-EIPQ-EIGSLRNLEILRIDQNNL-VGFIPDTI-FNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL  181 (385)
Q Consensus       106 ~L~~L~l~~~~~~~-~~~~-~~~~l~~L~~L~l~~~~~-~~~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L  181 (385)
                      .|+.|.+.|+.-.. .... .-.+++++++|.+.+|.. ++..-..+ ..+++|+.+++..|..............+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            45666666553211 1111 123566666666655542 21111111 24556666665553322111111113355666


Q ss_pred             ceEEccccc
Q 043347          182 EGLILGLNN  190 (385)
Q Consensus       182 ~~L~l~~~~  190 (385)
                      ++++++|+.
T Consensus       219 ~~lNlSwc~  227 (483)
T KOG4341|consen  219 KYLNLSWCP  227 (483)
T ss_pred             HHhhhccCc
Confidence            666666654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.55  E-value=6.6e-09  Score=94.54  Aligned_cols=242  Identities=23%  Similarity=0.230  Sum_probs=115.8

Q ss_pred             CCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEE
Q 043347           79 HCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTL  158 (385)
Q Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l  158 (385)
                      .+..++.+.+..+.+. .....+..+.+|+.+++.+|.+... ...+..+++|+.|++++|.++..  ..+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence            4445555555555554 2233455666666777766666522 22255566777777776666543  334555556667


Q ss_pred             EccCCcccccCCCCcccCCCCCCceEEccccccCCCCC-cccccCCcccEEEccCccccccCcccccCCCCccEEEecCC
Q 043347          159 SLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIP-SFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSN  237 (385)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  237 (385)
                      ++.+|.+...    ..+..+..|+.++++.+.+..... . ...+.+++.+.+.+|.+...  ..+.....+..+++..|
T Consensus       146 ~l~~N~i~~~----~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n  218 (414)
T KOG0531|consen  146 NLSGNLISDI----SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDN  218 (414)
T ss_pred             eeccCcchhc----cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccc
Confidence            7766666532    113346666666666666553322 1 34555666666666655432  22223333444455555


Q ss_pred             cccccchhhhhhhHhhhccc--CceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcC
Q 043347          238 YLTSSTSELMSLFSALVNCK--SLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGY  315 (385)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  315 (385)
                      .+.....        +....  +|+.+++.++++.... ..+... ..+..+++.++++....  .+...+.+..+....
T Consensus       219 ~i~~~~~--------l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~-~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~  286 (414)
T KOG0531|consen  219 KISKLEG--------LNELVMLHLRELYLSGNRISRSP-EGLENL-KNLPVLDLSSNRISNLE--GLERLPKLSELWLND  286 (414)
T ss_pred             cceeccC--------cccchhHHHHHHhcccCcccccc-cccccc-ccccccchhhccccccc--cccccchHHHhccCc
Confidence            5443221        11112  2555566655554211 111111 34445555554443211  122333444455554


Q ss_pred             ccccCC---Ccc-ccccCCCCCeEeccCCccc
Q 043347          316 NNLSGS---LPI-TLGRLKKLQGLDLQNNKFE  343 (385)
Q Consensus       316 ~~~~~~---~~~-~~~~~~~L~~L~l~~~~~~  343 (385)
                      +.+...   ... .....+.+....+.++.+.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (414)
T KOG0531|consen  287 NKLALSEAISQEYITSAAPTLVTLTLELNPIR  318 (414)
T ss_pred             chhcchhhhhccccccccccccccccccCccc
Confidence            444311   111 1233445555555555444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.54  E-value=1.2e-08  Score=92.91  Aligned_cols=196  Identities=28%  Similarity=0.275  Sum_probs=102.7

Q ss_pred             ccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccE
Q 043347           30 LSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKL  109 (385)
Q Consensus        30 ~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  109 (385)
                      +..+. .++++.+.+. .+.... ..+.+|+.+++.+|.+.+. ...+..+++|++|++++|.+...  ..+..++.|+.
T Consensus        71 l~~l~-~l~l~~n~i~-~~~~~l-~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~  144 (414)
T KOG0531|consen   71 LTSLK-ELNLRQNLIA-KILNHL-SKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE  144 (414)
T ss_pred             hHhHH-hhccchhhhh-hhhccc-ccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhh
Confidence            33444 3556666555 322212 2566777777777766522 22256677777777777776633  45555666777


Q ss_pred             EEeecccccCCCCcccCCCcCCcEEEecccccccccC-ccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccc
Q 043347          110 LYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIP-DTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGL  188 (385)
Q Consensus       110 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  188 (385)
                      |++.+|.+.+.  ..+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+.....    +.....+..+++..
T Consensus       145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~----~~~~~~l~~~~l~~  217 (414)
T KOG0531|consen  145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG----LDLLKKLVLLSLLD  217 (414)
T ss_pred             heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc----hHHHHHHHHhhccc
Confidence            77777766522  334456677777777776654422 1 3556666666666666542211    22223333334444


Q ss_pred             cccCCCCCcccccCC--cccEEEccCccccccCcccccCCCCccEEEecCCcccc
Q 043347          189 NNFSGSIPSFFFNAS--KLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS  241 (385)
Q Consensus       189 ~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  241 (385)
                      +.+.....  +....  +|+.+.+.+|.+... +..+..++.+..+++..+.+..
T Consensus       218 n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  218 NKISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             ccceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhccccc
Confidence            44432111  11111  256666666655432 1334455566666666655443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.47  E-value=1.3e-08  Score=82.41  Aligned_cols=140  Identities=19%  Similarity=0.228  Sum_probs=72.0

Q ss_pred             CCcccEEEccCccccccCc----ccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcc
Q 043347          202 ASKLYYLELAYNSFSGLIP----KALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSI  277 (385)
Q Consensus       202 ~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  277 (385)
                      -|.|+++....|.+.....    ..+..-.+|+.+.+..|.+...+..... +..+..+.+|+.|++.+|.++......+
T Consensus       156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~-~~gl~y~~~LevLDlqDNtft~~gS~~L  234 (388)
T COG5238         156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLA-FLGLFYSHSLEVLDLQDNTFTLEGSRYL  234 (388)
T ss_pred             CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHH-HHHHHHhCcceeeeccccchhhhhHHHH
Confidence            4567777776666532211    2233346788888888877654333222 3455667788888888887664332221


Q ss_pred             ----cccccceeEEEeeccccCCCCCcc----c--cCCCCccEEECcCccccCCCccc-----c--ccCCCCCeEeccCC
Q 043347          278 ----GNLSVSVEEIYMYKCNIHGRIPKE----I--GNLINLTKLSLGYNNLSGSLPIT-----L--GRLKKLQGLDLQNN  340 (385)
Q Consensus       278 ----~~~~~~l~~L~l~~~~~~~~~~~~----~--~~~~~L~~L~l~~~~~~~~~~~~-----~--~~~~~L~~L~l~~~  340 (385)
                          ..+ +.+++|.+.+|-++......    |  ...|+|..|...+|...+..-..     +  ..+|-|..|.++||
T Consensus       235 a~al~~W-~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN  313 (388)
T COG5238         235 ADALCEW-NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN  313 (388)
T ss_pred             HHHhccc-chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence                222 34566666666554322211    1  12356666666666544221111     1  22444555555556


Q ss_pred             ccc
Q 043347          341 KFE  343 (385)
Q Consensus       341 ~~~  343 (385)
                      ++.
T Consensus       314 r~~  316 (388)
T COG5238         314 RIK  316 (388)
T ss_pred             cch
Confidence            554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.36  E-value=6.5e-09  Score=89.09  Aligned_cols=280  Identities=18%  Similarity=0.077  Sum_probs=134.7

Q ss_pred             CCcEEecccccccccCC--CCccCcccccEEEeeccccc-CCCCccc-CCCcCCcEEEecccc-cccccCc-cccCCCCC
Q 043347           82 ELSRVSLSFNQFTGRIP--RDLGNSTKLKLLYLSFNNLI-GEIPQEI-GSLRNLEILRIDQNN-LVGFIPD-TIFNMSTL  155 (385)
Q Consensus        82 ~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~-~~~~~~~-~~l~~L~~L~l~~~~-~~~~~~~-~~~~l~~L  155 (385)
                      .|+.|.+.++.-.+.-+  ....+++++++|.+.++... +..-..+ ..|++|+++++..|. +++..-. -...+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            46666666664332111  22345777777777776422 1111112 256777777776643 3322222 23367777


Q ss_pred             cEEEccCCcccccCCCCcccCCCCCCceEEccccccCC--CCCcccccCCcccEEEccCcc-ccccC-cccccCCCCccE
Q 043347          156 KTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSG--SIPSFFFNASKLYYLELAYNS-FSGLI-PKALGQLRNLER  231 (385)
Q Consensus       156 ~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~  231 (385)
                      +++++++|.-.....-.....++..++.+...+|.-..  .+...-..+.-+.++++..|. +++.. -..-..+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            77777776532211111123344445555444432110  001111223445555554543 22221 122244566777


Q ss_pred             EEecCCcccccchhhhhhhHhhhcccCceEEEccCCC-CCCCCCCcccccccceeEEEeeccccCCC--CCccccCCCCc
Q 043347          232 LGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENP-VDGVLPSSIGNLSVSVEEIYMYKCNIHGR--IPKEIGNLINL  308 (385)
Q Consensus       232 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~~--~~~~~~~~~~L  308 (385)
                      ++.+++.-  .++..  +...-.++++|+.+.+++|. +++.....+....+.|+.+++.+|.....  +...-.+++.|
T Consensus       299 l~~s~~t~--~~d~~--l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l  374 (483)
T KOG4341|consen  299 LCYSSCTD--ITDEV--LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL  374 (483)
T ss_pred             hcccCCCC--CchHH--HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence            77766532  22211  11233456777777777764 33333334444446666666666644321  22222456677


Q ss_pred             cEEECcCcccc-CC----CccccccCCCCCeEeccCCcc-cCCChhhhhcCCCccEEEccCCc
Q 043347          309 TKLSLGYNNLS-GS----LPITLGRLKKLQGLDLQNNKF-EGPIPHEFCHFSRLYKFYLNRNK  365 (385)
Q Consensus       309 ~~L~l~~~~~~-~~----~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~  365 (385)
                      +.+.++.|... ++    +..+-.+...++.+.++++.. ++...+.+..+++|+.+++-+|+
T Consensus       375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            77777766432 11    011112344566666766643 33344445556677777776663

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.19  E-value=1.3e-07  Score=68.71  Aligned_cols=135  Identities=22%  Similarity=0.228  Sum_probs=94.0

Q ss_pred             CccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCC
Q 043347          228 NLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLIN  307 (385)
Q Consensus       228 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~  307 (385)
                      .+..++++.|.+....+    .+..+.....|+..++++|.+. .+|+.+...++.++.+++++|+++ ..|..++.+|.
T Consensus        28 E~h~ldLssc~lm~i~d----avy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~a  101 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIAD----AVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPA  101 (177)
T ss_pred             HhhhcccccchhhHHHH----HHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHH
Confidence            34566777776654443    3344566677888888888877 455556655578889999999998 57777999999


Q ss_pred             ccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccC
Q 043347          308 LTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSI  370 (385)
Q Consensus       308 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  370 (385)
                      |+.|+++.|.+. ..|+.+..+.++-.|+..+|... .++..+-........++.++++.+.-
T Consensus       102 Lr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~  162 (177)
T KOG4579|consen  102 LRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDET  162 (177)
T ss_pred             hhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccC
Confidence            999999999998 67777777888888998888877 44433333333333444555665443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.18  E-value=1.3e-06  Score=71.17  Aligned_cols=141  Identities=20%  Similarity=0.126  Sum_probs=79.0

Q ss_pred             CCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCccc----ccccceeEEEeeccccCCCC--
Q 043347          225 QLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIG----NLSVSVEEIYMYKCNIHGRI--  298 (385)
Q Consensus       225 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~l~~L~l~~~~~~~~~--  298 (385)
                      .-|.|+.+....|++.......++  ..+.....|+.+.+..|.+.......+.    .++.+++.|++.+|.++...  
T Consensus       155 ~kp~Le~vicgrNRlengs~~~~a--~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~  232 (388)
T COG5238         155 DKPKLEVVICGRNRLENGSKELSA--ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR  232 (388)
T ss_pred             cCCCceEEEeccchhccCcHHHHH--HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHH
Confidence            447788888888877776655544  3455557788888888776543222221    22367777777777665322  


Q ss_pred             --CccccCCCCccEEECcCccccCCCcccc------ccCCCCCeEeccCCcccCCC-----hhhhh--cCCCccEEEccC
Q 043347          299 --PKEIGNLINLTKLSLGYNNLSGSLPITL------GRLKKLQGLDLQNNKFEGPI-----PHEFC--HFSRLYKFYLNR  363 (385)
Q Consensus       299 --~~~~~~~~~L~~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~-----~~~~~--~~~~L~~L~l~~  363 (385)
                        ..+++.-+.|++|.+.+|-++..-...+      ...|+|+.|...+|.+.+..     ...+.  ++|-|..|.+.|
T Consensus       233 ~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng  312 (388)
T COG5238         233 YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG  312 (388)
T ss_pred             HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence              1222333456777777776653322211      12466777777766544311     11222  266666677777


Q ss_pred             Cccc
Q 043347          364 NKLS  367 (385)
Q Consensus       364 ~~~~  367 (385)
                      |.+.
T Consensus       313 Nr~~  316 (388)
T COG5238         313 NRIK  316 (388)
T ss_pred             Ccch
Confidence            7664

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.14  E-value=4.4e-08  Score=89.91  Aligned_cols=178  Identities=19%  Similarity=0.152  Sum_probs=105.2

Q ss_pred             cCCCCCCceEEccccccCCCCCcccccCCcccEEEccCc--ccccc-------CcccccCCCCccEEEecCCcccccchh
Q 043347          175 LIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYN--SFSGL-------IPKALGQLRNLERLGLQSNYLTSSTSE  245 (385)
Q Consensus       175 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~  245 (385)
                      +..+..|+.|.+.++++.. ......--..|++|.-.+.  .+.+.       ....+ ..-.|...+.+.|.+...+  
T Consensus       105 ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~~mD--  180 (1096)
T KOG1859|consen  105 IFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLVLMD--  180 (1096)
T ss_pred             eccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHHhHH--
Confidence            4467788888888887653 1111111123333322211  01100       01111 1123556666667665432  


Q ss_pred             hhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccc
Q 043347          246 LMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPIT  325 (385)
Q Consensus       246 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  325 (385)
                           ..+.-++.++.|+++.|++....  .+..+ +.|+.|+++.|.+.....-...++. |..|.+++|.++.  ...
T Consensus       181 -----~SLqll~ale~LnLshNk~~~v~--~Lr~l-~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t--L~g  249 (1096)
T KOG1859|consen  181 -----ESLQLLPALESLNLSHNKFTKVD--NLRRL-PKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT--LRG  249 (1096)
T ss_pred             -----HHHHHHHHhhhhccchhhhhhhH--HHHhc-ccccccccccchhccccccchhhhh-heeeeecccHHHh--hhh
Confidence                 35666678888888888876443  34444 7888888888887643333334454 8888888888762  335


Q ss_pred             cccCCCCCeEeccCCcccC-CChhhhhcCCCccEEEccCCccc
Q 043347          326 LGRLKKLQGLDLQNNKFEG-PIPHEFCHFSRLYKFYLNRNKLS  367 (385)
Q Consensus       326 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~  367 (385)
                      +.++.+|+.||+++|-+.+ .....+..+..|..|.+.||++.
T Consensus       250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            6778888888888886654 22223344677888888888875

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.06  E-value=1.1e-07  Score=87.40  Aligned_cols=128  Identities=27%  Similarity=0.354  Sum_probs=76.1

Q ss_pred             CCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEE
Q 043347          130 NLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLE  209 (385)
Q Consensus       130 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  209 (385)
                      .|...+.+.|.++ .....+.-++.++.|++++|++....    .+..++.|++|+++.|.++......-..| +|..|.
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~----~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD----NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLN  238 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH----HHHhcccccccccccchhccccccchhhh-hheeee
Confidence            4555555555554 33445556677777777777776432    25677777777777777664333222333 377777


Q ss_pred             ccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCC
Q 043347          210 LAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVD  270 (385)
Q Consensus       210 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  270 (385)
                      +++|.++..  ..+.++.+|+.|++++|-+.+-..     ...+..+..|+.|.+.||++.
T Consensus       239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hse-----L~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSE-----LEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ecccHHHhh--hhHHhhhhhhccchhHhhhhcchh-----hhHHHHHHHHHHHhhcCCccc
Confidence            777776643  234567777777777775543211     223444556677777777664

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.04  E-value=5.8e-06  Score=48.37  Aligned_cols=37  Identities=35%  Similarity=0.590  Sum_probs=22.5

Q ss_pred             CCCCeEeccCCcccCCChhhhhcCCCccEEEccCCccc
Q 043347          330 KKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLS  367 (385)
Q Consensus       330 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  367 (385)
                      ++|++|++++|+++ .++..++++++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35666667777666 34445666777777777777665

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.95  E-value=3.2e-05  Score=58.08  Aligned_cols=82  Identities=22%  Similarity=0.338  Sum_probs=27.5

Q ss_pred             CCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCC
Q 043347            3 LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE   82 (385)
Q Consensus         3 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   82 (385)
                      |.+|++|+.+.+.. .+...-..++..+..+. .+++.++ +. .++..+|..++.++.+.+.+ .+.......|..+++
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~-~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLK-SINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-S-EEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhcccccccc-ccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence            44455555555443 22211112223333444 3444442 33 44444444444455544433 222222334444444


Q ss_pred             CcEEecc
Q 043347           83 LSRVSLS   89 (385)
Q Consensus        83 L~~L~l~   89 (385)
                      ++.+++.
T Consensus        83 l~~i~~~   89 (129)
T PF13306_consen   83 LKNIDIP   89 (129)
T ss_dssp             ECEEEET
T ss_pred             ccccccC
Confidence            4444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.95  E-value=2.8e-06  Score=81.14  Aligned_cols=153  Identities=15%  Similarity=0.137  Sum_probs=83.4

Q ss_pred             CcccEEEccCcccc-ccCc-ccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCccccc
Q 043347          203 SKLYYLELAYNSFS-GLIP-KALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNL  280 (385)
Q Consensus       203 ~~L~~L~l~~~~~~-~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  280 (385)
                      .+|++|+++|...- ..-+ ..-..+|+|+.|.+.+-.+....     +.+...++|+|..|+++++.++..  ..++.+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-----F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~L  194 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-----FSQLCASFPNLRSLDISGTNISNL--SGISRL  194 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-----HHHHhhccCccceeecCCCCccCc--HHHhcc
Confidence            46788888774321 1111 11235688888888876554322     456677788888888888777644  223333


Q ss_pred             ccceeEEEeeccccCC-CCCccccCCCCccEEECcCccccCCC------ccccccCCCCCeEeccCCcccCCChhhhhc-
Q 043347          281 SVSVEEIYMYKCNIHG-RIPKEIGNLINLTKLSLGYNNLSGSL------PITLGRLKKLQGLDLQNNKFEGPIPHEFCH-  352 (385)
Q Consensus       281 ~~~l~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-  352 (385)
                       .+|+.|.+.+-.+.. .....+-.+++|+.||+|........      .++-..+|.|+.||.+++.+.+...+.+.. 
T Consensus       195 -knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~s  273 (699)
T KOG3665|consen  195 -KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNS  273 (699)
T ss_pred             -ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHh
Confidence             556666565555442 11122345667777777765433211      112233566777776666665544444332 


Q ss_pred             CCCccEEEccC
Q 043347          353 FSRLYKFYLNR  363 (385)
Q Consensus       353 ~~~L~~L~l~~  363 (385)
                      =|+|+.+..-+
T Consensus       274 H~~L~~i~~~~  284 (699)
T KOG3665|consen  274 HPNLQQIAALD  284 (699)
T ss_pred             CccHhhhhhhh
Confidence            34555554443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.93  E-value=1.6e-06  Score=82.80  Aligned_cols=78  Identities=23%  Similarity=0.288  Sum_probs=32.7

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccc-cCCCCccCcccccEEEeec
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTG-RIPRDLGNSTKLKLLYLSF  114 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~  114 (385)
                      +|.+.+-.+...--..++.++|+|..|||++++++..  ..+..+++|++|.+.+-.+.. .....+..+++|++||++.
T Consensus       152 sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~  229 (699)
T KOG3665|consen  152 SLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISR  229 (699)
T ss_pred             eEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence            4555544333121223444455555555555544422  334444555554444433321 1112333455555555544


Q ss_pred             c
Q 043347          115 N  115 (385)
Q Consensus       115 ~  115 (385)
                      .
T Consensus       230 ~  230 (699)
T KOG3665|consen  230 D  230 (699)
T ss_pred             c
Confidence            3

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.91  E-value=7.9e-05  Score=65.94  Aligned_cols=138  Identities=13%  Similarity=0.142  Sum_probs=69.7

Q ss_pred             cCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCc-cccccCcccccCCCC
Q 043347          150 FNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYN-SFSGLIPKALGQLRN  228 (385)
Q Consensus       150 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~  228 (385)
                      ..+..++.|++++|.+. .+|.     -..+|++|.+++|......++.+  .++|++|.+++| .+. ..      +++
T Consensus        49 ~~~~~l~~L~Is~c~L~-sLP~-----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sL------P~s  113 (426)
T PRK15386         49 EEARASGRLYIKDCDIE-SLPV-----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GL------PES  113 (426)
T ss_pred             HHhcCCCEEEeCCCCCc-ccCC-----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cc------ccc
Confidence            34677888888877554 3331     12357777777654333334333  256777777776 332 11      245


Q ss_pred             ccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCc
Q 043347          229 LERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINL  308 (385)
Q Consensus       229 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L  308 (385)
                      |+.|+++++.......    +      .++|+.|.+.++...... ..-..++++|+.|.+.+|... ..|..+.  .+|
T Consensus       114 Le~L~L~~n~~~~L~~----L------PssLk~L~I~~~n~~~~~-~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SL  179 (426)
T PRK15386        114 VRSLEIKGSATDSIKN----V------PNGLTSLSINSYNPENQA-RIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESL  179 (426)
T ss_pred             cceEEeCCCCCccccc----C------cchHhheecccccccccc-ccccccCCcccEEEecCCCcc-cCccccc--ccC
Confidence            6667766544322110    1      124555665432211000 000124467777777777654 2333232  367


Q ss_pred             cEEECcCc
Q 043347          309 TKLSLGYN  316 (385)
Q Consensus       309 ~~L~l~~~  316 (385)
                      +.|+++.+
T Consensus       180 k~L~ls~n  187 (426)
T PRK15386        180 QSITLHIE  187 (426)
T ss_pred             cEEEeccc
Confidence            77777654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.84  E-value=6.2e-05  Score=56.48  Aligned_cols=109  Identities=17%  Similarity=0.194  Sum_probs=44.4

Q ss_pred             CChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCC
Q 043347           48 FPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGS  127 (385)
Q Consensus        48 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  127 (385)
                      ++..+|..+++|+.+.+.. .+......+|..+++|+.+.+..+ +.......+.+++.++.+.+.. .+.......|..
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence            4455555666666666653 344444555666666666666553 3323334455555566666643 222223334445


Q ss_pred             CcCCcEEEecccccccccCccccCCCCCcEEEcc
Q 043347          128 LRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLL  161 (385)
Q Consensus       128 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~  161 (385)
                      +++++.+.+..+ +.......+.++ +++.+.+.
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            556666555433 333333344444 55555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.82  E-value=1.9e-05  Score=46.19  Aligned_cols=37  Identities=38%  Similarity=0.583  Sum_probs=25.2

Q ss_pred             CCccEEECcCccccCCCccccccCCCCCeEeccCCccc
Q 043347          306 INLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFE  343 (385)
Q Consensus       306 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  343 (385)
                      ++|++|++++|.++ .++..+..+++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            46777777777777 45555777777777777777776

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.81  E-value=3.2e-05  Score=60.38  Aligned_cols=82  Identities=20%  Similarity=0.117  Sum_probs=40.4

Q ss_pred             cceeEEEeeccccCCCCCccccCCCCccEEECcCccccCC-CccccccCCCCCeEeccCCcccCCCh---hhhhcCCCcc
Q 043347          282 VSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGS-LPITLGRLKKLQGLDLQNNKFEGPIP---HEFCHFSRLY  357 (385)
Q Consensus       282 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~  357 (385)
                      ++|..|.+.+|.++...|..-..+|+|..|.+.+|.+... ..+.+..||+|++|.+-+|+++..--   ..+..+|+|+
T Consensus        64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~  143 (233)
T KOG1644|consen   64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLR  143 (233)
T ss_pred             cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcce
Confidence            4555555666655554444334455555666665554421 12234455556666555555542111   1233455555


Q ss_pred             EEEccC
Q 043347          358 KFYLNR  363 (385)
Q Consensus       358 ~L~l~~  363 (385)
                      .||..+
T Consensus       144 ~LDF~k  149 (233)
T KOG1644|consen  144 TLDFQK  149 (233)
T ss_pred             Eeehhh
Confidence            555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.76  E-value=6.2e-07  Score=65.19  Aligned_cols=81  Identities=26%  Similarity=0.340  Sum_probs=37.5

Q ss_pred             cccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEec
Q 043347           58 RLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRID  137 (385)
Q Consensus        58 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  137 (385)
                      .|+..++++|.++...+..-.+++..+.|++..|.+. ..|..+..++.|+.|++..|++. ..|+.+..+.++-+|+..
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            3444455555444222222233444555555555544 44444555555555555555444 444444444444444444


Q ss_pred             ccc
Q 043347          138 QNN  140 (385)
Q Consensus       138 ~~~  140 (385)
                      ++.
T Consensus       132 ~na  134 (177)
T KOG4579|consen  132 ENA  134 (177)
T ss_pred             CCc
Confidence            443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.76  E-value=6.9e-05  Score=58.61  Aligned_cols=59  Identities=22%  Similarity=0.256  Sum_probs=29.0

Q ss_pred             CCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccc
Q 043347           82 ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLV  142 (385)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  142 (385)
                      ....+|+++|.+.  ....|..++.|..|.+++|+++...|.--..+++|..|.+.+|.+.
T Consensus        43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            4445555555554  1234555555555555555555433333333445555555554443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.62  E-value=0.00017  Score=63.82  Aligned_cols=120  Identities=18%  Similarity=0.201  Sum_probs=70.6

Q ss_pred             ccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccc
Q 043347          223 LGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI  302 (385)
Q Consensus       223 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~  302 (385)
                      +..+++++.|++++|.+..++.          -.++|+.|.+++|.-....|..   ++.+|++|.+.+|.....+|   
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~----------LP~sLtsL~Lsnc~nLtsLP~~---LP~nLe~L~Ls~Cs~L~sLP---  111 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV----------LPNELTEITIENCNNLTTLPGS---IPEGLEKLTVCHCPEISGLP---  111 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC----------CCCCCcEEEccCCCCcccCCch---hhhhhhheEccCcccccccc---
Confidence            3446889999999998776531          1246999999886554444543   34689999999984333333   


Q ss_pred             cCCCCccEEECcCcccc--CCCcccccc------------------CCCCCeEeccCCcccCCChhhhhcCCCccEEEcc
Q 043347          303 GNLINLTKLSLGYNNLS--GSLPITLGR------------------LKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLN  362 (385)
Q Consensus       303 ~~~~~L~~L~l~~~~~~--~~~~~~~~~------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  362 (385)
                         ++|+.|++..+...  ..+|..+..                  .++|+.|++++|... ..|..+  ..+|+.|+++
T Consensus       112 ---~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ls  185 (426)
T PRK15386        112 ---ESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKL--PESLQSITLH  185 (426)
T ss_pred             ---cccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCcccc--cccCcEEEec
Confidence               25666666554321  123322211                  135666777666544 333332  2466777766


Q ss_pred             CC
Q 043347          363 RN  364 (385)
Q Consensus       363 ~~  364 (385)
                      .+
T Consensus       186 ~n  187 (426)
T PRK15386        186 IE  187 (426)
T ss_pred             cc
Confidence            54

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.53  E-value=1.2e-05  Score=75.25  Aligned_cols=225  Identities=19%  Similarity=0.088  Sum_probs=111.0

Q ss_pred             CCcCCcEEEecccccccc--cCccccCCCCCcEEEccCC-cccccCC--CCcccCCCCCCceEEccccc-cCCCCCcccc
Q 043347          127 SLRNLEILRIDQNNLVGF--IPDTIFNMSTLKTLSLLNN-TLSGNLP--SSKKLIGLPNLEGLILGLNN-FSGSIPSFFF  200 (385)
Q Consensus       127 ~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~l~l~~~-~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~  200 (385)
                      .++.|+.+.+.++.-...  .......++.|+.++++++ ......+  .......++.|+.+++..+. +++.....+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            367777777776643322  2234456777888887762 1111111  01123455777777777776 4433323332


Q ss_pred             -cCCcccEEEccCcc-ccccCc-ccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcc
Q 043347          201 -NASKLYYLELAYNS-FSGLIP-KALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSI  277 (385)
Q Consensus       201 -~~~~L~~L~l~~~~-~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  277 (385)
                       .|++|++|.+.++. +++... .....+++|++|+++++...  .+..  +......+++++.+.+.....        
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~--~d~~--l~~~~~~c~~l~~l~~~~~~~--------  333 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL--TDSG--LEALLKNCPNLRELKLLSLNG--------  333 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc--hHHH--HHHHHHhCcchhhhhhhhcCC--------
Confidence             37778888776665 443322 23356777888888877543  1111  122234466666555443221        


Q ss_pred             cccccceeEEEeeccccCC---CCCccccCCCCccEEECcCccccCCC-ccccccCCC--------------CCeEeccC
Q 043347          278 GNLSVSVEEIYMYKCNIHG---RIPKEIGNLINLTKLSLGYNNLSGSL-PITLGRLKK--------------LQGLDLQN  339 (385)
Q Consensus       278 ~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~--------------L~~L~l~~  339 (385)
                         +..++.+.+.++....   ........++.++++.+..+...... ...+.+|+.              ++.|+++.
T Consensus       334 ---c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~  410 (482)
T KOG1947|consen  334 ---CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSD  410 (482)
T ss_pred             ---CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEeccc
Confidence               1233333333332211   11122345666666666666533221 123334443              46666666


Q ss_pred             Cccc-CCChhhhhc-CCCccEEEccCCcc
Q 043347          340 NKFE-GPIPHEFCH-FSRLYKFYLNRNKL  366 (385)
Q Consensus       340 ~~~~-~~~~~~~~~-~~~L~~L~l~~~~~  366 (385)
                      +... ......... +.++..+++.+|..
T Consensus       411 ~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  411 CRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             CccccccchHHHhhhhhccccCCccCccc
Confidence            6432 222222222 55666777777643

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.26  E-value=2.5e-05  Score=73.14  Aligned_cols=42  Identities=19%  Similarity=0.105  Sum_probs=24.4

Q ss_pred             ccccCCCCCeEeccCCcccCCC-hhhhhcCCC--------------ccEEEccCCcc
Q 043347          325 TLGRLKKLQGLDLQNNKFEGPI-PHEFCHFSR--------------LYKFYLNRNKL  366 (385)
Q Consensus       325 ~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~--------------L~~L~l~~~~~  366 (385)
                      ....+++++.+.+.++...+.. ...+.+++.              ++.|++..|..
T Consensus       357 ~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~  413 (482)
T KOG1947|consen  357 ILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRL  413 (482)
T ss_pred             HHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCcc
Confidence            3456778877777776644333 123334444              47777777753

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.20  E-value=9.6e-05  Score=60.26  Aligned_cols=66  Identities=24%  Similarity=0.313  Sum_probs=32.7

Q ss_pred             ccCCCCccEEECcCc--cccCCCccccccCCCCCeEeccCCcccC-CChhhhhcCCCccEEEccCCccc
Q 043347          302 IGNLINLTKLSLGYN--NLSGSLPITLGRLKKLQGLDLQNNKFEG-PIPHEFCHFSRLYKFYLNRNKLS  367 (385)
Q Consensus       302 ~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~  367 (385)
                      +..+|+|+.|.++.|  .+.+.+......+|+|+++++++|++.. .-...+..+++|..|++.+|..+
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence            344555666666655  4443444444445666666666665542 01111233555556666655544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.19  E-value=1.1e-05  Score=66.17  Aligned_cols=101  Identities=28%  Similarity=0.344  Sum_probs=76.7

Q ss_pred             cccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCC-CCccCcccc
Q 043347           29 NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIP-RDLGNSTKL  107 (385)
Q Consensus        29 ~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L  107 (385)
                      .+.+.+ -|+++++.++|   ..++..|+.|++|.++-|.++.  ...+..|++|+.|.+..|.|.+... ..+.++|+|
T Consensus        17 dl~~vk-KLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   17 DLENVK-KLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSL   90 (388)
T ss_pred             HHHHhh-hhcccCCCccH---HHHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence            344556 49999999883   2567789999999999998862  3357889999999999998874322 246789999


Q ss_pred             cEEEeecccccCCCCcc-----cCCCcCCcEEE
Q 043347          108 KLLYLSFNNLIGEIPQE-----IGSLRNLEILR  135 (385)
Q Consensus       108 ~~L~l~~~~~~~~~~~~-----~~~l~~L~~L~  135 (385)
                      +.|.|..|+..+..+..     +..+|+|+.|+
T Consensus        91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99999998876555443     45678888775

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.98  E-value=3e-05  Score=63.60  Aligned_cols=58  Identities=22%  Similarity=0.282  Sum_probs=31.8

Q ss_pred             CcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCC
Q 043347          203 SKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVD  270 (385)
Q Consensus       203 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  270 (385)
                      .+++.|+..+|.+.++  .....++.|+.|.++-|.++.+        ..+..|++|+.|++..|.+.
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--------~pl~rCtrLkElYLRkN~I~   76 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--------APLQRCTRLKELYLRKNCIE   76 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--------hhHHHHHHHHHHHHHhcccc
Confidence            3455555555555533  2344566666666666665543        34555666666666655544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=0.00013  Score=57.19  Aligned_cols=83  Identities=18%  Similarity=0.135  Sum_probs=53.8

Q ss_pred             ceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCC-cccc-ccCCCCCeEeccCC-cccCCChhhhhcCCCccEE
Q 043347          283 SVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSL-PITL-GRLKKLQGLDLQNN-KFEGPIPHEFCHFSRLYKF  359 (385)
Q Consensus       283 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~-~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L  359 (385)
                      .++.++-+++.+-.+.-.-+.+++.++.|.+.+|.-.+.. .+-+ .-.++|+.|++++| ++++.....+.++++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            5677777777665555555667777777777777543221 1111 23467888888877 6776666677778888887


Q ss_pred             EccCCc
Q 043347          360 YLNRNK  365 (385)
Q Consensus       360 ~l~~~~  365 (385)
                      .+.+-+
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            777654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.62  E-value=0.00073  Score=55.27  Aligned_cols=61  Identities=25%  Similarity=0.213  Sum_probs=29.3

Q ss_pred             CCcccEEEccCCcccCcCCCCccCCCCCcEEecccc--cccccCCCCccCcccccEEEeeccccc
Q 043347           56 LPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFN--QFTGRIPRDLGNSTKLKLLYLSFNNLI  118 (385)
Q Consensus        56 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~  118 (385)
                      ...|+.+++.+..++  ....|..+++|+.|.++.|  ++...++.....+++|+++++++|++.
T Consensus        42 ~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   42 FVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            334444444444433  1224455556666666655  333333333344466666666655544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.25  E-value=0.0027  Score=30.74  Aligned_cols=22  Identities=41%  Similarity=0.567  Sum_probs=14.8

Q ss_pred             CccEEEccCCcccccCCCccccc
Q 043347          355 RLYKFYLNRNKLSGSIPSCLGDL  377 (385)
Q Consensus       355 ~L~~L~l~~~~~~~~~~~~~~~l  377 (385)
                      +|++|++++|+++ .+|..|.+|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4678888888877 566556543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.38  E-value=0.0025  Score=50.19  Aligned_cols=84  Identities=15%  Similarity=0.209  Sum_probs=49.0

Q ss_pred             CceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCC-ccc-cCCCCccEEECcCc-cccCCCccccccCCCCCe
Q 043347          258 SLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIP-KEI-GNLINLTKLSLGYN-NLSGSLPITLGRLKKLQG  334 (385)
Q Consensus       258 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~  334 (385)
                      .++.++-+++.+..+.-+.+..+ .+++.|.+.+|+..+..- .-+ +-.++|++|++++| .|++.-..++..+++|+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l-~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDL-RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhcc-chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            45556666666665555566555 667777777776543211 111 12457777777766 455555556666777777


Q ss_pred             EeccCCcc
Q 043347          335 LDLQNNKF  342 (385)
Q Consensus       335 L~l~~~~~  342 (385)
                      |.+.+-..
T Consensus       181 L~l~~l~~  188 (221)
T KOG3864|consen  181 LHLYDLPY  188 (221)
T ss_pred             HHhcCchh
Confidence            77666533

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.19  E-value=0.024  Score=27.30  Aligned_cols=18  Identities=56%  Similarity=0.696  Sum_probs=10.4

Q ss_pred             ccEEEecCccccCCCCccc
Q 043347            9 LEVLVLNNNLLTGTIPASI   27 (385)
Q Consensus         9 l~~L~l~~~~~~~~~~~~~   27 (385)
                      |++|++++|.++ .+|+.+
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            556666666665 555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.89  E-value=0.041  Score=24.56  Aligned_cols=14  Identities=29%  Similarity=0.463  Sum_probs=6.9

Q ss_pred             CCccEEEccCCccc
Q 043347          354 SRLYKFYLNRNKLS  367 (385)
Q Consensus       354 ~~L~~L~l~~~~~~  367 (385)
                      ++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~n~L~   14 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT   14 (17)
T ss_dssp             TT-SEEEETSS--S
T ss_pred             CccCEEECCCCCCC
Confidence            35666666666654

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.99  E-value=0.00048  Score=63.28  Aligned_cols=114  Identities=29%  Similarity=0.207  Sum_probs=57.3

Q ss_pred             CcEEEccCCcccccCCC--CcccCCCCCCceEEccccccCCCCC----cccccC-CcccEEEccCccccccC----cccc
Q 043347          155 LKTLSLLNNTLSGNLPS--SKKLIGLPNLEGLILGLNNFSGSIP----SFFFNA-SKLYYLELAYNSFSGLI----PKAL  223 (385)
Q Consensus       155 L~~l~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~~----~~~~  223 (385)
                      +..+.+.+|.+...-..  ...+...+.|..|+++++.+.+...    ..+... ..++.|.+..|.++...    ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            56666666665432100  1124556677777777777652211    122222 34555666666554332    2344


Q ss_pred             cCCCCccEEEecCCcccccchhhhhhhHhhh----cccCceEEEccCCCCC
Q 043347          224 GQLRNLERLGLQSNYLTSSTSELMSLFSALV----NCKSLKVIVLAENPVD  270 (385)
Q Consensus       224 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~  270 (385)
                      .....++.++++.|.+.....  ....+++.    ...++++|.+.+|.++
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~--~~l~~~l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGL--LVLSQALESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             hcccchhHHHHHhcccchhhh--HHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence            456677777777776653222  11223333    3455666666655544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.32  E-value=0.031  Score=27.56  Aligned_cols=13  Identities=23%  Similarity=0.404  Sum_probs=5.0

Q ss_pred             CccEEEccCCccc
Q 043347          355 RLYKFYLNRNKLS  367 (385)
Q Consensus       355 ~L~~L~l~~~~~~  367 (385)
                      +|+.|++++|+++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4444444444444

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.25  E-value=0.0015  Score=60.07  Aligned_cols=187  Identities=22%  Similarity=0.235  Sum_probs=118.2

Q ss_pred             CceEEccccccCCC----CCcccccCCcccEEEccCccccccCcc----cccCC-CCccEEEecCCcccccchhhhhhhH
Q 043347          181 LEGLILGLNNFSGS----IPSFFFNASKLYYLELAYNSFSGLIPK----ALGQL-RNLERLGLQSNYLTSSTSELMSLFS  251 (385)
Q Consensus       181 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~  251 (385)
                      +..+.+.+|.+.+.    ....+...+.+..+++++|.+.+....    .+... ..++.|.+..|.++.....  ++..
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~--~l~~  166 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA--PLAA  166 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH--HHHH
Confidence            66777777776633    233456678888999999887644332    22232 4567788888877665432  2446


Q ss_pred             hhhcccCceEEEccCCCCCCC----CCCcccc---cccceeEEEeeccccCCC----CCccccCCCC-ccEEECcCcccc
Q 043347          252 ALVNCKSLKVIVLAENPVDGV----LPSSIGN---LSVSVEEIYMYKCNIHGR----IPKEIGNLIN-LTKLSLGYNNLS  319 (385)
Q Consensus       252 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~~---~~~~l~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~~~~~  319 (385)
                      .+.....++.++++.|.+...    .+..+..   ...++++|++++|.++..    ....+...++ +..+++..|.+.
T Consensus       167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence            677788889999988876421    1111111   125778888888877632    1223344445 667888888776


Q ss_pred             CC----CccccccC-CCCCeEeccCCcccCCChhh----hhcCCCccEEEccCCccccc
Q 043347          320 GS----LPITLGRL-KKLQGLDLQNNKFEGPIPHE----FCHFSRLYKFYLNRNKLSGS  369 (385)
Q Consensus       320 ~~----~~~~~~~~-~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~  369 (385)
                      +.    ....+..+ +.++.+++.+|.++......    +..++.++++.+++|++...
T Consensus       247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            43    22233444 56788888888887654443    34477888888888887643

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.82  E-value=0.39  Score=24.03  Aligned_cols=14  Identities=36%  Similarity=0.477  Sum_probs=7.5

Q ss_pred             CCccEEEccCCccc
Q 043347          354 SRLYKFYLNRNKLS  367 (385)
Q Consensus       354 ~~L~~L~l~~~~~~  367 (385)
                      ++|+.|++++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.82  E-value=0.39  Score=24.03  Aligned_cols=14  Identities=36%  Similarity=0.477  Sum_probs=7.5

Q ss_pred             CCccEEEccCCccc
Q 043347          354 SRLYKFYLNRNKLS  367 (385)
Q Consensus       354 ~~L~~L~l~~~~~~  367 (385)
                      ++|+.|++++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.40  E-value=0.019  Score=46.45  Aligned_cols=85  Identities=19%  Similarity=0.157  Sum_probs=52.7

Q ss_pred             CCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEE
Q 043347           55 GLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEIL  134 (385)
Q Consensus        55 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  134 (385)
                      ...+.+.||++.|++- .....|..+..+..|+++.+++. ..|..+.....+..++...|... -.|.++...++++.+
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            4556666777666554 23334555566666677666665 56666666666666666665554 556666667777776


Q ss_pred             Eecccccc
Q 043347          135 RIDQNNLV  142 (385)
Q Consensus       135 ~l~~~~~~  142 (385)
                      +..++.+.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            66666544

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=81.33  E-value=0.84  Score=23.42  Aligned_cols=18  Identities=39%  Similarity=0.455  Sum_probs=9.4

Q ss_pred             CCCCeEeccCCcccCCCh
Q 043347          330 KKLQGLDLQNNKFEGPIP  347 (385)
Q Consensus       330 ~~L~~L~l~~~~~~~~~~  347 (385)
                      ++|++|+|++|.+.+...
T Consensus         2 ~~L~~LdL~~N~i~~~G~   19 (28)
T smart00368        2 PSLRELDLSNNKLGDEGA   19 (28)
T ss_pred             CccCEEECCCCCCCHHHH
Confidence            345555665555554333

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=81.26  E-value=0.83  Score=22.88  Aligned_cols=11  Identities=36%  Similarity=0.498  Sum_probs=4.9

Q ss_pred             CCCCeEeccCC
Q 043347          330 KKLQGLDLQNN  340 (385)
Q Consensus       330 ~~L~~L~l~~~  340 (385)
                      ++|++|++++|
T Consensus         2 ~~L~~L~l~~C   12 (26)
T smart00367        2 PNLRELDLSGC   12 (26)
T ss_pred             CCCCEeCCCCC
Confidence            34444444444

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=80.41  E-value=4.2  Score=37.05  Aligned_cols=131  Identities=21%  Similarity=0.118  Sum_probs=60.2

Q ss_pred             CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhh-c-CCCcccEEEccCCcccCcCCCCccCC---C
Q 043347            7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMC-E-GLPRLKGLYVSYNQFKGPIPNNLWHC---K   81 (385)
Q Consensus         7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~---~   81 (385)
                      +.+++++++.|.+.+..|.++..-..   -++++.+..++.+...+. + .-..+.+++++.|.....++..+..+   .
T Consensus       165 pr~r~~dls~npi~dkvpihl~~p~~---pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~  241 (553)
T KOG4242|consen  165 PRARQHDLSPNPIGDKVPIHLPQPGN---PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL  241 (553)
T ss_pred             chhhhhccCCCcccccCCccccCCCC---ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence            45566777777766666655433221   134444433321111111 0 11236677777776665544433222   3


Q ss_pred             CCcEEecccccccc---cCCCCccCcccccEEEeecccccC----CCC----cccCCCcCCcEEEeccccc
Q 043347           82 ELSRVSLSFNQFTG---RIPRDLGNSTKLKLLYLSFNNLIG----EIP----QEIGSLRNLEILRIDQNNL  141 (385)
Q Consensus        82 ~L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~----~~~----~~~~~l~~L~~L~l~~~~~  141 (385)
                      -++.++.+...+..   ..+...+.-+++...++..+....    +.+    +.++.-+++ +|++..++.
T Consensus       242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~  311 (553)
T KOG4242|consen  242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYT  311 (553)
T ss_pred             hhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccC
Confidence            45566666554431   111223334566666665543221    222    223344555 666655544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	385
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-29
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-09
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-29
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-09
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-10
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-06
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		6e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  124 bits (312), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 173/367 (47%), Gaps = 22/367 (5%)
Query: 23  IPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPR--LKGLYVSYNQFKGPIPNNLWHC 80
           +P S+ NLS+    LD S+N+ +G    ++C+  P+  L+ LY+  N F G IP  L +C
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQN-PKNTLQELYLQNNGFTGKIPPTLSNC 417
Query: 81  KELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNN 140
            EL  + LSFN  +G IP  LG+ +KL+ L L  N L GEIPQE+  ++ LE L +D N+
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 141 LVGFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIG-LPNLEGLILGLNNFSGSIPSFF 199
           L G IP  + N                      K IG L NL  L L  N+FSG+IP+  
Sbjct: 478 LTGEIPSGLSNC---TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 200 FNASKLYYLELAYNSFSGLIPKAL----GQLRNLERLGLQSNYLTSSTS----------- 244
            +   L +L+L  N F+G IP A+    G++      G +  Y+ +              
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594
Query: 245 ELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGN 304
           E   + S  +N  S +      + V G   S   + + S+  + M    + G IPKEIG+
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654
Query: 305 LINLTKXXXXXXXXXXXXPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRN 364
           +  L              P  +G L+ L  LDL +NK +G IP      + L +  L+ N
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Query: 365 KLSGSIP 371
            LSG IP
Sbjct: 715 NLSGPIP 721

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 139/365 (38%), Gaps = 79/365 (21%)
Query: 83  LSRVSLSFNQFTGRIPR--DLGNSTKLKLLYLSFNNLIGEIPQEIGS---LRNLEILRID 137
           L+ + LS N  +G +     LG+ + LK L +S N L  + P ++     L +LE+L + 
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLS 159
Query: 138 QN-----NLVGFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNFS 192
            N     N+VG++      +                      +    NLE L +  NNFS
Sbjct: 160 ANSISGANVVGWV------LSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFS 213
Query: 193 GSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSA 252
             IP F  + S L +L+++ N  SG   +A+     L+ L + SN        L      
Sbjct: 214 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP----- 267
Query: 253 LVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXX 312
               KSL+ + LAEN   G +P  +     ++  + +   + +G +P   G+   L    
Sbjct: 268 ---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324
Query: 313 XXXXXXXXXXPI-TLGRLKKLQGLDL---------------------------------- 337
                     P+ TL +++ L+ LDL                                  
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Query: 338 -----------------QNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSL 380
                            QNN F G IP    + S L   +L+ N LSG+IPS LG L+ L
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 381 RILSL 385
           R L L
Sbjct: 445 RDLKL 449

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  124 bits (312), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 173/367 (47%), Gaps = 22/367 (5%)
Query: 23  IPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPR--LKGLYVSYNQFKGPIPNNLWHC 80
           +P S+ NLS+    LD S+N+ +G    ++C+  P+  L+ LY+  N F G IP  L +C
Sbjct: 356 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQN-PKNTLQELYLQNNGFTGKIPPTLSNC 414
Query: 81  KELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNN 140
            EL  + LSFN  +G IP  LG+ +KL+ L L  N L GEIPQE+  ++ LE L +D N+
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 141 LVGFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIG-LPNLEGLILGLNNFSGSIPSFF 199
           L G IP  + N                      K IG L NL  L L  N+FSG+IP+  
Sbjct: 475 LTGEIPSGLSNC---TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Query: 200 FNASKLYYLELAYNSFSGLIPKAL----GQLRNLERLGLQSNYLTSSTS----------- 244
            +   L +L+L  N F+G IP A+    G++      G +  Y+ +              
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 591
Query: 245 ELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGN 304
           E   + S  +N  S +      + V G   S   + + S+  + M    + G IPKEIG+
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 651
Query: 305 LINLTKXXXXXXXXXXXXPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRN 364
           +  L              P  +G L+ L  LDL +NK +G IP      + L +  L+ N
Sbjct: 652 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 711
Query: 365 KLSGSIP 371
            LSG IP
Sbjct: 712 NLSGPIP 718

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 139/365 (38%), Gaps = 79/365 (21%)
Query: 83  LSRVSLSFNQFTGRIPR--DLGNSTKLKLLYLSFNNLIGEIPQEIGS---LRNLEILRID 137
           L+ + LS N  +G +     LG+ + LK L +S N L  + P ++     L +LE+L + 
Sbjct: 99  LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLS 156
Query: 138 QN-----NLVGFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNFS 192
            N     N+VG++      +                      +    NLE L +  NNFS
Sbjct: 157 ANSISGANVVGWV------LSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFS 210
Query: 193 GSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSA 252
             IP F  + S L +L+++ N  SG   +A+     L+ L + SN        L      
Sbjct: 211 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP----- 264
Query: 253 LVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXX 312
               KSL+ + LAEN   G +P  +     ++  + +   + +G +P   G+   L    
Sbjct: 265 ---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 321
Query: 313 XXXXXXXXXXPI-TLGRLKKLQGLDL---------------------------------- 337
                     P+ TL +++ L+ LDL                                  
Sbjct: 322 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
Query: 338 -----------------QNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSL 380
                            QNN F G IP    + S L   +L+ N LSG+IPS LG L+ L
Sbjct: 382 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 441
Query: 381 RILSL 385
           R L L
Sbjct: 442 RDLKL 446

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 98/255 (38%), Gaps = 41/255 (16%)
Query: 121 IPQEIGSLRNLEILRIDQ-NNLVGFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIGLP 179
           IP  + +L  L  L I   NNLVG IP  I                            L 
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAK--------------------------LT 101
Query: 180 NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL 239
            L  L +   N SG+IP F      L  L+ +YN+ SG +P ++  L NL  +    N +
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 240 TSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIP 299
           + +  +    FS L        + ++ N + G +P +  NL+++  ++          + 
Sbjct: 162 SGAIPDSYGSFSKL-----FTSMTISRNRLTGKIPPTFANLNLAFVDLS------RNMLE 210
Query: 300 KEIGNLINLTKXXXXXXXXXXXXPITLGRL---KKLQGLDLQNNKFEGPIPHEFCHFSRL 356
            +   L    K               LG++   K L GLDL+NN+  G +P        L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 357 YKFYLNRNKLSGSIP 371
           +   ++ N L G IP
Sbjct: 271 HSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 271 GVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKXXXXXXXXXXXXPITLGRLK 330
           G +P +I  L+  +  +Y+   N+ G IP  +  +  L              P ++  L 
Sbjct: 91  GPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 331 KLQGLDLQNNKFEGPIPHEFCHFSRLY-KFYLNRNKLSGSIPSCLGDLN 378
            L G+    N+  G IP  +  FS+L+    ++RN+L+G IP    +LN
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 86/217 (39%), Gaps = 48/217 (22%)
Query: 73  IPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNL 131
           IP+N+    +  ++ L  N+ +    +     TKL+LLYL+ N L   +P  I   L+NL
Sbjct: 31  IPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNL 87
Query: 132 EILRIDQNNLVGFIPDTIFNMXXXXXXXXXXXXXXXXXXXXKKLIGLPNLEGLILGLNNF 191
           E L +  N L   +P  +F+                          L NL  L L  N  
Sbjct: 88  ETLWVTDNKLQA-LPIGVFDQ-------------------------LVNLAELRLDRNQL 121
Query: 192 SGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLT-------SSTS 244
               P  F + +KL YL L YN    L      +L +L+ L L +N L           +
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181
Query: 245 ELMSLF-----------SALVNCKSLKVIVLAENPVD 270
           EL +L             A  + + LK++ L ENP D
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	385
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-94
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-83
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-81
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-79
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-76
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-33
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-59
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-52
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-49
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-50
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-48
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-45
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-40
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-40
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-30
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  297 bits (762), Expect = 3e-94
 Identities = 114/392 (29%), Positives = 164/392 (41%), Gaps = 21/392 (5%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPA--SIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRL 59
                A L  L L+ N L+G +    S+ + S +   L+ S+N+L           L  L
Sbjct: 95  GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF-LNVSSNTLDFPGKVSGGLKLNSL 153

Query: 60  KGLYVSYNQFKGPIPNNLW---HCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNN 116
           + L +S N   G           C EL  +++S N+ +G +   +     L+ L +S NN
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNN 211

Query: 117 LIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLI 176
               IP  +G    L+ L I  N L G     I   + LK L++ +N   G +P      
Sbjct: 212 FSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--- 267

Query: 177 GLPNLEGLILGLNNFSGSIPSFFF-NASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQ 235
            L +L+ L L  N F+G IP F       L  L+L+ N F G +P   G    LE L L 
Sbjct: 268 -LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326

Query: 236 SNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIH 295
           SN  +            L+  + LKV+ L+ N   G LP S+ NLS S+  + +   N  
Sbjct: 327 SNNFSGELPM-----DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381

Query: 296 GRIPKEIGN--LINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHF 353
           G I   +       L +L L  N  +G +P TL    +L  L L  N   G IP      
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441

Query: 354 SRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           S+L    L  N L G IP  L  + +L  L L
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  291 bits (748), Expect = 3e-92
 Identities = 126/386 (32%), Positives = 189/386 (48%), Gaps = 16/386 (4%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEG-LPRLKG 61
           L  +  L+VL L+ N  +G +P S+ NLS+    LD S+N+ +G    ++C+     L+ 
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           LY+  N F G IP  L +C EL  + LSFN  +G IP  LG+ +KL+ L L  N L GEI
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
           PQE+  ++ LE L +D N+L G IP  + N + L  +SL NN L+G +P    +  L NL
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW--IGRLENL 516

Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241
             L L  N+FSG+IP+   +   L +L+L  N F+G IP A+ +        + +N++  
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIA- 571

Query: 242 STSELMSLFSALVNCKSLKVIVLAENPV--DGVLPSSIGNLSVSVEEIYMYKCNIHGRIP 299
                   +  + N    K    A N +   G+    +  LS +     +      G   
Sbjct: 572 -----GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS-TRNPCNITSRVYGGHTS 625

Query: 300 KEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKF 359
               N  ++  L + YN LSG +P  +G +  L  L+L +N   G IP E      L   
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685

Query: 360 YLNRNKLSGSIPSCLGDLNSLRILSL 385
            L+ NKL G IP  +  L  L  + L
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDL 711

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  291 bits (747), Expect = 5e-92
 Identities = 127/391 (32%), Positives = 196/391 (50%), Gaps = 21/391 (5%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDD--MCEGLPR 58
            LG+ + L+ L +++N L      S    L+S+   LD S NS++G+      + +G   
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV-LDLSANSISGANVVGWVLSDGCGE 179

Query: 59  LKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLI 118
           LK L +S N+  G +   +  C  L  + +S N F+  IP  LG+ + L+ L +S N L 
Sbjct: 180 LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236

Query: 119 GEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIG- 177
           G+  + I +   L++L I  N  VG IP     + +L+ LSL  N  +G +P    L G 
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDF--LSGA 292

Query: 178 LPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPK-ALGQLRNLERLGLQS 236
              L GL L  N+F G++P FF + S L  L L+ N+FSG +P   L ++R L+ L L  
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352

Query: 237 NYLTSSTSELMSLFSALVNCK-SLKVIVLAENPVDGVLPSSIGNLS-VSVEEIYMYKCNI 294
           N  +        L  +L N   SL  + L+ N   G +  ++      +++E+Y+     
Sbjct: 353 NEFSG------ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406

Query: 295 HGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFS 354
            G+IP  + N   L  L L +N LSG++P +LG L KL+ L L  N  EG IP E  +  
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466

Query: 355 RLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
            L    L+ N L+G IPS L +  +L  +SL
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISL 497

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  268 bits (687), Expect = 3e-83
 Identities = 115/386 (29%), Positives = 168/386 (43%), Gaps = 40/386 (10%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
            +    EL++L +++N   G IP     L S+   L  + N  TG  PD +      L G
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPPL--PLKSLQY-LSLAENKFTGEIPDFLSGACDTLTG 298

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRD-LGNSTKLKLLYLSFNNLIGE 120
           L +S N F G +P     C  L  ++LS N F+G +P D L     LK+L LSFN   GE
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 121 IPQEIGSLR-NLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLP 179
           +P+ + +L  +L  L +  NN  G I   +                              
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP------------------------KN 394

Query: 180 NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL 239
            L+ L L  N F+G IP    N S+L  L L++N  SG IP +LG L  L  L L  N L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454

Query: 240 TSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIP 299
                    +   L+  K+L+ ++L  N + G +PS + N + ++  I +    + G IP
Sbjct: 455 EG------EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT-NLNWISLSNNRLTGEIP 507

Query: 300 KEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKF 359
           K IG L NL  L L  N+ SG++P  LG  + L  LDL  N F G IP      S     
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK--- 564

Query: 360 YLNRNKLSGSIPSCLGDLNSLRILSL 385
            +  N ++G     + +    +    
Sbjct: 565 -IAANFIAGKRYVYIKNDGMKKECHG 589

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  264 bits (676), Expect = 1e-81
 Identities = 120/394 (30%), Positives = 176/394 (44%), Gaps = 26/394 (6%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEG-LPRLK 60
            L +L  LE L L+N+ + G++       +S+++ LD S NSL+G        G    LK
Sbjct: 72  SLLSLTGLESLFLSNSHINGSVS-GFKCSASLTS-LDLSRNSLSGPVTTLTSLGSCSGLK 129

Query: 61  GLYVSYNQFKGPIP-NNLWHCKELSRVSLSFNQFTGRIPRDL---GNSTKLKLLYLSFNN 116
            L VS N    P   +       L  + LS N  +G             +LK L +S N 
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189

Query: 117 LIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLI 176
           + G++   +    NLE L +  NN    IP  + + S L+ L +  N LSG+   +  + 
Sbjct: 190 ISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA--IS 244

Query: 177 GLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKAL-GQLRNLERLGLQ 235
               L+ L +  N F G IP        L YL LA N F+G IP  L G    L  L L 
Sbjct: 245 TCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302

Query: 236 SNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLP-SSIGNLSVSVEEIYMYKCNI 294
            N+         ++     +C  L+ + L+ N   G LP  ++  +   ++ + +     
Sbjct: 303 GNHFYG------AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR-GLKVLDLSFNEF 355

Query: 295 HGRIPKEIGNL-INLTKLSLGYNNLSGSLPITLGR--LKKLQGLDLQNNKFEGPIPHEFC 351
            G +P+ + NL  +L  L L  NN SG +   L +     LQ L LQNN F G IP    
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415

Query: 352 HFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           + S L   +L+ N LSG+IPS LG L+ LR L L
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  258 bits (662), Expect = 1e-79
 Identities = 114/373 (30%), Positives = 168/373 (45%), Gaps = 14/373 (3%)

Query: 2   ELGNL-AELEVLVLNNNLLTGTIPASIFNLSSIS-TGLDFSNNSLTGSFPDDMCEGLPRL 59
            L NL A L  L L++N  +G I  ++      +   L   NN  TG  P  +      L
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSEL 420

Query: 60  KGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIG 119
             L++S+N   G IP++L    +L  + L  N   G IP++L     L+ L L FN+L G
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480

Query: 120 EIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLP 179
           EIP  + +  NL  + +  N L G IP  I  +  L  L L NN+ SGN+P+   L    
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE--LGDCR 538

Query: 180 NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL 239
           +L  L L  N F+G+IP+  F  S      +A N  +G     +      +      N L
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLL 594

Query: 240 TSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIP 299
                    L        +     +      G    +  N   S+  + M    + G IP
Sbjct: 595 EFQGIRSEQLN----RLSTRNPCNITSRVYGGHTSPTFDNNG-SMMFLDMSYNMLSGYIP 649

Query: 300 KEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKF 359
           KEIG++  L  L+LG+N++SGS+P  +G L+ L  LDL +NK +G IP      + L + 
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709

Query: 360 YLNRNKLSGSIPS 372
            L+ N LSG IP 
Sbjct: 710 DLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  249 bits (637), Expect = 5e-76
 Identities = 98/392 (25%), Positives = 160/392 (40%), Gaps = 26/392 (6%)

Query: 4   GNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLY 63
             +  +++     N+    + +S+ +L+ + + L  SN+ + GS     C     L  L 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES-LFLSNSHINGSVSGFKC--SASLTSLD 106

Query: 64  VSYNQFKGPIP--NNLWHCKELSRVSLSFNQFTGRIPR-DLGNSTKLKLLYLSFNNLIGE 120
           +S N   GP+    +L  C  L  +++S N                L++L LS N++ G 
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 121 IPQEI---GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIG 177
                        L+ L I  N + G +   +     L+ L + +N  S  +P    L  
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF---LGD 221

Query: 178 LPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSN 237
              L+ L +  N  SG         ++L  L ++ N F G IP     L++L+ L L  N
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN 279

Query: 238 YLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGR 297
             T    +          C +L  + L+ N   G +P   G+ S  +E + +   N  G 
Sbjct: 280 KFTGEIPD-----FLSGACDTLTGLDLSGNHFYGAVPPFFGSCS-LLESLALSSNNFSGE 333

Query: 298 IPKE-IGNLINLTKLSLGYNNLSGSLPITLGRLK-KLQGLDLQNNKFEGPIPHEFCHF-- 353
           +P + +  +  L  L L +N  SG LP +L  L   L  LDL +N F GPI    C    
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393

Query: 354 SRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           + L + YL  N  +G IP  L + + L  L L
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  185 bits (471), Expect = 2e-52
 Identities = 65/291 (22%), Positives = 112/291 (38%), Gaps = 18/291 (6%)

Query: 100 DLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLS 159
                T + L     N     +   + SL  LE L +  +++ G +       ++L +L 
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106

Query: 160 LLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIP-SFFFNASKLYYLELAYNSFSGL 218
           L  N+LSG + +   L     L+ L +  N        S     + L  L+L+ NS SG 
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 219 IPKAL---GQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS 275
                        L+ L +  N ++            +  C +L+ + ++ N     +P 
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD--------VSRCVNLEFLDVSSNNFSTGIP- 217

Query: 276 SIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGL 335
            +G+ S +++ + +    + G   + I     L  L++  N   G +P     LK LQ L
Sbjct: 218 FLGDCS-ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP--PLPLKSLQYL 274

Query: 336 DLQNNKFEGPIPHEFCH-FSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
            L  NKF G IP         L    L+ N   G++P   G  + L  L+L
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  128 bits (325), Expect = 9e-33
 Identities = 52/193 (26%), Positives = 81/193 (41%), Gaps = 22/193 (11%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSN-------------------- 41
           ELG+   L  L LN NL  GTIPA++F  S        +                     
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592

Query: 42  -NSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRD 100
                G   + +   L       ++   + G       +   +  + +S+N  +G IP++
Sbjct: 593 LLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651

Query: 101 LGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSL 160
           +G+   L +L L  N++ G IP E+G LR L IL +  N L G IP  +  ++ L  + L
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711

Query: 161 LNNTLSGNLPSSK 173
            NN LSG +P   
Sbjct: 712 SNNNLSGPIPEMG 724

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  200 bits (511), Expect = 8e-62
 Identities = 87/315 (27%), Positives = 128/315 (40%), Gaps = 42/315 (13%)

Query: 65  SYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR--IPRDLGNSTKLKLLYLS-FNNLIGEI 121
               + G + +       ++ + LS         IP  L N   L  LY+   NNL+G I
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
           P  I  L  L  L I   N+ G IPD +  + TL TL    N LSG LP S  +  LPNL
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS--ISSLPNL 151

Query: 182 EGLILGLNNFSGSIPSFFFNASKLY-YLELAYNSFSGLIPKALGQLRNLERLGLQSNYLT 240
            G+    N  SG+IP  + + SKL+  + ++ N  +G IP     L NL  + L  N L 
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLE 210

Query: 241 SSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPK 300
                                         G      G+   + ++I++ K ++   +  
Sbjct: 211 ------------------------------GDASVLFGSDK-NTQKIHLAKNSLAFDLG- 238

Query: 301 EIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFY 360
           ++G   NL  L L  N + G+LP  L +LK L  L++  N   G IP    +  R     
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSA 297

Query: 361 LNRNKL--SGSIPSC 373
              NK      +P+C
Sbjct: 298 YANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  194 bits (496), Expect = 1e-59
 Identities = 64/238 (26%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 2   ELGNLAELEVLVL-NNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLK 60
            L NL  L  L +   N L G IP +I  L+ +   L  ++ +++G+ PD + + +  L 
Sbjct: 71  SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY-LYITHTNVSGAIPDFLSQ-IKTLV 128

Query: 61  GLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKL-KLLYLSFNNLIG 119
            L  SYN   G +P ++     L  ++   N+ +G IP   G+ +KL   + +S N L G
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188

Query: 120 EIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLP 179
           +IP    +L NL  + + +N L G       +    + + L  N+L+ +L     +    
Sbjct: 189 KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---VGLSK 244

Query: 180 NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSN 237
           NL GL L  N   G++P        L+ L +++N+  G IP+  G L+  +     +N
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  188 bits (480), Expect = 3e-57
 Identities = 80/330 (24%), Positives = 122/330 (36%), Gaps = 66/330 (20%)

Query: 16  NNLLTGTIPASIFNLSSISTGLDFSNNSLTGSF--PDDMCEGLPRLKGLYVS-YNQFKGP 72
           N    G +  +      +   LD S  +L   +  P  +   LP L  LY+   N   GP
Sbjct: 35  NRTWLGVLCDTDTQTYRV-NNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGP 92

Query: 73  IPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLE 132
           IP  +    +L  + ++    +G IP  L     L  L  S+N L G +P  I SL NL 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 133 ILRIDQNNLVGFIPDTIFNMSTLKT-LSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNF 191
            +  D N + G IPD+  + S L T +++  N L+G +P +       NL  + L  N  
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT---FANLNLAFVDLSRNML 209

Query: 192 SGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFS 251
            G     F +      + LA NS +  + K +G  +NL  L L++N +            
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY----------- 257

Query: 252 ALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKL 311
                              G LP  +  L                           L  L
Sbjct: 258 -------------------GTLPQGLTQLK-------------------------FLHSL 273

Query: 312 SLGYNNLSGSLPITLGRLKKLQGLDLQNNK 341
           ++ +NNL G +P   G L++       NNK
Sbjct: 274 NVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  185 bits (471), Expect = 7e-56
 Identities = 70/302 (23%), Positives = 106/302 (35%), Gaps = 61/302 (20%)

Query: 87  SLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGE--IPQEIGSLRNLEILRI-DQNNLVG 143
                 + G +      + ++  L LS  NL     IP  + +L  L  L I   NNLVG
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 144 FIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNAS 203
            IP  I                            L  L  L +   N SG+IP F     
Sbjct: 92  PIPPAIAK--------------------------LTQLHYLYITHTNVSGAIPDFLSQIK 125

Query: 204 KLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIV 263
            L  L+ +YN+ SG +P ++  L NL  +    N ++                       
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS----------------------- 162

Query: 264 LAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLP 323
                  G +P S G+ S     + + +  + G+IP    NL NL  + L  N L G   
Sbjct: 163 -------GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDAS 214

Query: 324 ITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRIL 383
           +  G  K  Q + L  N     +  +      L    L  N++ G++P  L  L  L  L
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 384 SL 385
           ++
Sbjct: 274 NV 275

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  148 bits (376), Expect = 5e-42
 Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 6/195 (3%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
            L  +  L  L  + N L+GT+P SI +L ++  G+ F  N ++G+ PD           
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNL-VGITFDGNRISGAIPDSYGSFSKLFTS 178

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           + +S N+  G IP    +   L+ V LS N   G      G+    + ++L+ N+L  ++
Sbjct: 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
             ++G  +NL  L +  N + G +P  +  +  L +L++  N L G +P       L   
Sbjct: 238 G-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN---LQRF 293

Query: 182 EGLILGLNNFSGSIP 196
           +      N      P
Sbjct: 294 DVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  137 bits (347), Expect = 1e-37
 Identities = 50/233 (21%), Positives = 84/233 (36%), Gaps = 38/233 (16%)

Query: 157 TLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGS--IPSFFFNASKLYYLELA-YN 213
           T    N T  G L  +        +  L L   N      IPS   N   L +L +   N
Sbjct: 30  TTDCCNRTWLGVLCDT--DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87

Query: 214 SFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVL 273
           +  G IP A+ +L  L  L +    ++                              G +
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVS------------------------------GAI 117

Query: 274 PSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKL- 332
           P  +  +  ++  +      + G +P  I +L NL  ++   N +SG++P + G   KL 
Sbjct: 118 PDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176

Query: 333 QGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
             + +  N+  G IP  F + + L    L+RN L G      G   + + + L
Sbjct: 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 66.4 bits (163), Expect = 2e-12
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 1   MELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLK 60
           +  G+    + + L  N L   +   +    +++  LD  NN + G+ P  + + L  L 
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG-LDLRNNRIYGTLPQGLTQ-LKFLH 271

Query: 61  GLYVSYNQFKGPIPNNLWHCKELSRVSLSFN 91
            L VS+N   G IP    + +     + + N
Sbjct: 272 SLNVSFNNLCGEIPQGG-NLQRFDVSAYANN 301

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  204 bits (520), Expect = 1e-59
 Identities = 82/399 (20%), Positives = 143/399 (35%), Gaps = 20/399 (5%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCE-GLPRLKG 61
                 L  L L++N L+ T   +   L ++   L  SNN +     +++       LK 
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE-LLLSNNKIQALKSEELDIFANSSLKK 175

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLG---NSTKLKLLYLSFNNLI 118
           L +S NQ K   P        L  + L+  Q    +   L     +T ++ L LS + L 
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 119 GEIPQEIGSLR--NLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSG-------NL 169
                    L+  NL +L +  NNL     D+   +  L+   L  N +          L
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 170 PSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNL 229
            + + L    +     + L +        F     L +L +  N   G+       L NL
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

Query: 230 ERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYM 289
           + L L +++  S  +     F +L +   L ++ L +N +  +   +   L   +E + +
Sbjct: 356 KYLSLSNSFT-SLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLG-HLEVLDL 412

Query: 290 YKCNIHGRIP-KEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEG--PI 346
               I   +  +E   L N+ ++ L YN        +   +  LQ L L+    +     
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472

Query: 347 PHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           P  F     L    L+ N ++      L  L  L IL L
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDL 511

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  199 bits (508), Expect = 5e-58
 Identities = 82/397 (20%), Positives = 153/397 (38%), Gaps = 16/397 (4%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
               L  L+VL L +N L+     +    ++++  L   +NS+     ++       L  
Sbjct: 68  LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE-LHLMSNSIQ-KIKNNPFVKQKNLIT 125

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLG--NSTKLKLLYLSFNNLIG 119
           L +S+N             + L  + LS N+       +L    ++ LK L LS N +  
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185

Query: 120 EIPQEIGSLRNLEILRIDQNNLVGFIPDTIF---NMSTLKTLSLLNNTLSGNLPSSKKLI 176
             P    ++  L  L ++   L   + + +      ++++ LSL N+ LS    ++   +
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245

Query: 177 GLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQS 236
              NL  L L  NN +      F    +L Y  L YN+   L   +L  L N+  L L+ 
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 237 NYLTSSTS--ELMSL-FSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCN 293
           ++   S S   L  +   +    K L+ + + +N + G+  +    L  +++ + +    
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI-NLKYLSLSNSF 364

Query: 294 IHGRIPKEIG----NLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIP-H 348
              R              L  L+L  N +S         L  L+ LDL  N+    +   
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 349 EFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           E+     +++ YL+ NK      +    + SL+ L L
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  191 bits (488), Expect = 3e-55
 Identities = 78/403 (19%), Positives = 134/403 (33%), Gaps = 28/403 (6%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
                ++L  L +  N ++   P     L  +   L+  +N L+    D        L  
Sbjct: 44  NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKV-LNLQHNELSQ-LSDKTFAFCTNLTE 101

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L++  N  +    N     K L  + LS N  +            L+ L LS N +    
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161

Query: 122 PQEIGSLRN--LEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSS-KKLIGL 178
            +E+    N  L+ L +  N +  F P     +  L  L L N  L  +L       +  
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221

Query: 179 PNLEGLILGLNNFSGSIPSFFFN--ASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQS 236
            ++  L L  +  S +  + F     + L  L+L+YN+ + +   +   L  LE   L+ 
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 237 NYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVL---------PSSIGNLSVSVEEI 287
           N +    S       +L    +++ + L  +     +           S   L   +E +
Sbjct: 282 NNIQHLFS------HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK-CLEHL 334

Query: 288 YMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLG----RLKKLQGLDLQNNKFE 343
            M   +I G        LINL  LSL  +  S                L  L+L  NK  
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394

Query: 344 GPIPHEFCHFSRLYKFYLNRNKLSGSIP-SCLGDLNSLRILSL 385
                 F     L    L  N++   +       L ++  + L
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  185 bits (472), Expect = 6e-53
 Identities = 75/390 (19%), Positives = 141/390 (36%), Gaps = 23/390 (5%)

Query: 8   ELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYN 67
             EV   ++  LT  +P  +   ++I+  L+ ++N L      +      +L  L V +N
Sbjct: 5   SHEVADCSHLKLT-QVPDDLP--TNITV-LNLTHNQLRRLPAANF-TRYSQLTSLDVGFN 59

Query: 68  QFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGS 127
                 P        L  ++L  N+ +    +     T L  L+L  N++          
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 128 LRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILG 187
            +NL  L +  N L      T   +  L+ L L NN +         +    +L+ L L 
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 188 LNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALG---QLRNLERLGLQSNYLTSSTS 244
            N      P  F    +L+ L L        + + L       ++  L L ++ L+++++
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 245 ELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGN 304
              + F  L    +L ++ L+ N ++ V   S   L   +E  ++   NI       +  
Sbjct: 240 ---TTFLGL-KWTNLTMLDLSYNNLNVVGNDSFAWLP-QLEYFFLEYNNIQHLFSHSLHG 294

Query: 305 LINLTKLSLGYNNLSGSL---------PITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSR 355
           L N+  L+L  +    S+           +   LK L+ L++++N   G   + F     
Sbjct: 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN 354

Query: 356 LYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           L    L+ +  S           SL    L
Sbjct: 355 LKYLSLSNSFTSLRTL-TNETFVSLAHSPL 383

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  183 bits (467), Expect = 3e-52
 Identities = 79/405 (19%), Positives = 149/405 (36%), Gaps = 32/405 (7%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIFNLSSIS-TGLDFSNNSLTGSFPDDMCEGLPRLKGLY 63
               +  L L+N+ L+ T   +   L   + T LD S N+L     +D    LP+L+  +
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFF 278

Query: 64  VSYNQFKGPIPNNLWHCKELS---------RVSLSFNQFTGRIPRDLGNSTKLKLLYLSF 114
           + YN  +    ++L     +          + S+S                 L+ L +  
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 115 NNLIGEIPQEIGSLRNLEILRIDQNNL-VGFIPDTIF---NMSTLKTLSLLNNTLSGNLP 170
           N++ G        L NL+ L +  +   +  + +  F     S L  L+L  N +S    
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 171 SSKKLIGLPNLEGLILGLNNFSGSIP-SFFFNASKLYYLELAYNSFSGLIPKALGQLRNL 229
            +     L +LE L LGLN     +    +     ++ + L+YN +  L   +   + +L
Sbjct: 399 DA--FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456

Query: 230 ERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYM 289
           +RL L+   L +    + S  S     ++L ++ L+ N +  +    +  L   +E + +
Sbjct: 457 QRLMLRRVALKN----VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE-KLEILDL 511

Query: 290 YKCNIH--------GRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNK 341
              N+         G     +  L +L  L+L  N            L +L+ +DL  N 
Sbjct: 512 QHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571

Query: 342 FEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGD-LNSLRILSL 385
                   F +   L    L +N ++       G    +L  L +
Sbjct: 572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  174 bits (444), Expect = 5e-49
 Identities = 76/401 (18%), Positives = 128/401 (31%), Gaps = 34/401 (8%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV 64
               L +L L+ N L      S   L  +        N++   F   +  GL  ++ L +
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY-FFLEYNNIQHLFSHSLH-GLFNVRYLNL 303

Query: 65  SYNQFKGPIPNN---------LWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115
             +  K  I                K L  +++  N   G           LK L LS +
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 116 NL-IGEIPQEIGS---LRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPS 171
              +  +  E         L IL + +N +     D    +  L+ L L  N +   L  
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 172 SKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGL--IPKALGQLRNL 229
            +   GL N+  + L  N +     + F     L  L L   +   +   P     LRNL
Sbjct: 424 QE-WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 230 ERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAEN--------PVDGVLPSSIGNLS 281
             L L +N + +   +       L   + L+++ L  N           G     +  LS
Sbjct: 483 TILDLSNNNIANINDD------MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS 536

Query: 282 VSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNK 341
             +  + +          +   +L  L  + LG NNL+            L+ L+LQ N 
Sbjct: 537 -HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 342 FEGPIPHEFCH-FSRLYKFYLNRNKLSGSIPSCLGDLNSLR 381
                   F   F  L +  +  N    +  S    +N + 
Sbjct: 596 ITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  103 bits (258), Expect = 4e-24
 Identities = 41/205 (20%), Positives = 67/205 (32%), Gaps = 11/205 (5%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTG-SFPDDMCEGLPRLK 60
           E   L  +  + L+ N        S   + S+   L     +L          + L  L 
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR-LMLRRVALKNVDSSPSPFQPLRNLT 483

Query: 61  GLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFT--------GRIPRDLGNSTKLKLLYL 112
            L +S N       + L   ++L  + L  N           G     L   + L +L L
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543

Query: 113 SFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSS 172
             N       +    L  L+I+ +  NNL         N  +LK+L+L  N ++  +   
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-VEKK 602

Query: 173 KKLIGLPNLEGLILGLNNFSGSIPS 197
                  NL  L +  N F  +  S
Sbjct: 603 VFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 306 INLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNK 365
           ++       +  L+  +P  L     +  L+L +N+        F  +S+L    +  N 
Sbjct: 4   VSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 366 LSGSIPSCLGDLNSLRILSL 385
           +S   P     L  L++L+L
Sbjct: 61  ISKLEPELCQKLPMLKVLNL 80

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
             +L EL+++ L  N L     +   N  S+ + L+   N +T             L  L
Sbjct: 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS-LNLQKNLITSVEKKVFGPAFRNLTEL 614

Query: 63  YVSYNQFKGPIPNNLW 78
            + +N F     +  W
Sbjct: 615 DMRFNPFDCTCESIAW 630

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  194 bits (495), Expect = 2e-56
 Identities = 57/425 (13%), Positives = 117/425 (27%), Gaps = 48/425 (11%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSIS------------------TGLDFSNNS 43
            +  L +L    + N+          +   +                    T ++  N  
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260

Query: 44  LTGSFPDDMCEGLPRLKGLYVSYNQFK--------GPIPNNLWHCKELSRVSLSFNQFT- 94
                P  +   LP ++ + V+ N+               +    +++  + + +N    
Sbjct: 261 NLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319

Query: 95  GRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMST 154
             +   L    KL +L   +N L G++P   GS   L  L +  N +     +       
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQ 378

Query: 155 LKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSG-------SIPSFFFNASKLYY 207
           ++ LS  +N L   +P+      +  +  +    N            +    F    +  
Sbjct: 379 VENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437

Query: 208 LELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS-STSELMSLFSALVNCKSLKVIVLAE 266
           + L+ N  S    +       L  + L  N LT    + L        N   L  I L  
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 267 NPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLG------YNNLSG 320
           N +  +           +  I +   +     P +  N   L    +        N    
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

Query: 321 SLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSL 380
             P  +     L  L + +N     +  +      +    +  N       S +      
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEA 613

Query: 381 RILSL 385
            +  L
Sbjct: 614 GMYML 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  185 bits (471), Expect = 5e-53
 Identities = 67/413 (16%), Positives = 129/413 (31%), Gaps = 46/413 (11%)

Query: 2   ELGNLAELEVLVLNNNLLTG----TIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLP 57
            +G L ELEVL L ++          P  I    S         +        D  E   
Sbjct: 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159

Query: 58  RLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNL 117
            L    ++ +  +  I  +     + +++    N  T  + + +   TKL+  Y+  +  
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF 218

Query: 118 IGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIG 177
           + E   E     N E                  N+  L  + + N      LP+   L  
Sbjct: 219 VAENICEAWENENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF--LKA 271

Query: 178 LPNLEGLILGLNNF--------SGSIPSFFFNASKLYYLELAYNSFSGL-IPKALGQLRN 228
           LP ++ + +  N               +      K+  + + YN+     +  +L +++ 
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK 331

Query: 229 LERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIY 288
           L  L    N L            A  +   L  + LA N +   +P++    +  VE + 
Sbjct: 332 LGMLECLYNQLE-------GKLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLS 383

Query: 289 MYKCNIHGRIPK--EIGNLINLTKLSLGYNNLSG-------SLPITLGRLKKLQGLDLQN 339
                +   IP   +  ++  ++ +   YN +          L  T  +   +  ++L N
Sbjct: 384 FAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442

Query: 340 NKFEGPIPHEFCHFSRLYKFYLNRNKLSG-------SIPSCLGDLNSLRILSL 385
           N+        F   S L    L  N L+               +   L  + L
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  183 bits (467), Expect = 2e-52
 Identities = 67/399 (16%), Positives = 125/399 (31%), Gaps = 38/399 (9%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDD-------MCE 54
           +  NL +L  + + N      +P  +  L  +   ++ + N                   
Sbjct: 244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL-INVACNRGISGEQLKDDWQALADAP 302

Query: 55  GLPRLKGLYVSYNQFK-GPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLS 113
              +++ +Y+ YN  K  P+  +L   K+L  +   +NQ  G      G+  KL  L L+
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLA 361

Query: 114 FNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDT-IFNMSTLKTLSLLNNTLSGNLPSS 172
           +N +        G    +E L    N L          ++S +  +    N +      +
Sbjct: 362 YNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 173 -----KKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGL-------IP 220
                       N+  + L  N  S      F   S L  + L  N  + +         
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

Query: 221 KALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNL 280
           +       L  + L+ N LT  + +             L  I L+ N      P+   N 
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDF-----RATTLPYLVGIDLSYNSFSK-FPTQPLNS 535

Query: 281 S-----VSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGL 335
           S         +            P+ I    +LT+L +G N++     +       +  L
Sbjct: 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK---VNEKITPNISVL 592

Query: 336 DLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCL 374
           D+++N          C +     + L  +K    I  C 
Sbjct: 593 DIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ-DIRGCD 630

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  179 bits (457), Expect = 5e-51
 Identities = 48/405 (11%), Positives = 118/405 (29%), Gaps = 37/405 (9%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
            L +   +  L L     +G +P +I  L+ +   L   ++    +      +G+     
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEV-LALGSHGEKVNERLFGPKGISANMS 134

Query: 62  L---YVSYNQFKGPIPNNL--WHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNN 116
                     ++    +        +L +  ++ +     I +    + K   +    NN
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 117 LIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLI 176
           +   + + +  L  L    +  +  V       +        +                 
Sbjct: 195 I-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLK--WD 246

Query: 177 GLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGL--------IPKALGQLRN 228
            L +L  + +        +P+F     ++  + +A N                       
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 229 LERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIY 288
           ++ + +  N L +   E     ++L   K L ++    N ++G LP + G+    +  + 
Sbjct: 307 IQIIYIGYNNLKTFPVE-----TSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLN 359

Query: 289 MYKCNIHGRIPKEIGNLINLTKLSLGYNNLSG-SLPITLGRLKKLQGLDLQNNKFEG--- 344
           +    I        G    +  LS  +N L           +  +  +D   N+      
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 345 ----PIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
               P+         +    L+ N++S          + L  ++L
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  177 bits (452), Expect = 2e-50
 Identities = 50/408 (12%), Positives = 111/408 (27%), Gaps = 39/408 (9%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSIS-TGLDFSNNSLTGSFPDDMCEGLPRLK 60
            +      E           T                  +++    S          +  
Sbjct: 128 GISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI-TLKDT 186

Query: 61  GLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGE 120
            +    N     +   +    +L +  +  + F      +             +      
Sbjct: 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE-----NENSEYAQQYKT 240

Query: 121 IPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSG------NLPSSKK 174
              +  +L++L  + +     +  +P  +  +  ++ +++  N          +  +   
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 175 LIGLPNLEGLILGLNNF-SGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLG 233
                 ++ + +G NN  +  + +      KL  LE  YN   G +P A G    L  L 
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359

Query: 234 LQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS-SIGNLSVSVEEIYMYKC 292
           L  N +T   +            + ++ +  A N +  +       ++S  +  I     
Sbjct: 360 LAYNQITEIPANFCG------FTEQVENLSFAHNKLKYIPNIFDAKSVS-VMSAIDFSYN 412

Query: 293 NIHG-------RIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEG- 344
            I          +       IN++ ++L  N +S            L  ++L  N     
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 345 ------PIPHEFCHFSRLYKFYLNRNKLSGSIPS-CLGDLNSLRILSL 385
                      F +   L    L  NKL+          L  L  + L
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  165 bits (421), Expect = 5e-46
 Identities = 46/376 (12%), Positives = 115/376 (30%), Gaps = 41/376 (10%)

Query: 46  GSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTG----RIPRDL 101
           G+ P        R+ GL +      G +P+ +    EL  ++L  +          P+ +
Sbjct: 70  GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI 129

Query: 102 GNSTKLKLLYLSFNNLIGEIPQEIGSLR--NLEILRIDQNNLVGFIPDTIFNMSTLKTLS 159
             +   +       +               +L    I+ +     I  +         + 
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189

Query: 160 LLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYY------------ 207
            L+N ++  +  +  ++ L  L    +G + F        +      Y            
Sbjct: 190 QLSNNITF-VSKA--VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD 246

Query: 208 -------LELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSL--FSALVNCKS 258
                  +E+        +P  L  L  ++ + +  N   S           +     + 
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 259 LKVIVLAENP-VDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNN 317
           +++I +  N      + +S+  +   +  +      + G      G+ I L  L+L YN 
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMK-KLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQ 364

Query: 318 LSGSLPITLGRLKKLQGLDLQNNKFEG-PIPHEFCHFSRLYKFYLNRNKLSG-------S 369
           ++       G  ++++ L   +NK +  P   +    S +     + N++          
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 370 IPSCLGDLNSLRILSL 385
           +        ++  ++L
Sbjct: 425 LDPTPFKGINVSSINL 440

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  139 bits (352), Expect = 2e-36
 Identities = 39/312 (12%), Positives = 88/312 (28%), Gaps = 50/312 (16%)

Query: 87  SLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVG--- 143
           +   + +  +    L ++ ++  L L      G +P  IG L  LE+L +  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 144 -FIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNA 202
            F P  I    + +    +                  +L    +  +    SI       
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 203 SKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVI 262
            K   +    N+ +  + KA+ +L  L +  + ++                         
Sbjct: 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFV---------------------- 219

Query: 263 VLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSL 322
                                           +     +  NL +LT + +        L
Sbjct: 220 --------AENICEAWENE------NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265

Query: 323 PITLGRLKKLQGLDLQNNKF--------EGPIPHEFCHFSRLYKFYLNRNKL-SGSIPSC 373
           P  L  L ++Q +++  N+         +     +     ++   Y+  N L +  + + 
Sbjct: 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325

Query: 374 LGDLNSLRILSL 385
           L  +  L +L  
Sbjct: 326 LQKMKKLGMLEC 337

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 15/140 (10%)

Query: 1   MELGNLAELEVLVLNNNLLTGTIPASIFNLSS-----ISTGLDFSNNSLTGSFPDDMCEG 55
                L  L  + L+ N  +   P    N S+     I    D   N     +P+ +   
Sbjct: 507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL- 564

Query: 56  LPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115
            P L  L +  N  +  +   +     +S + +  N         +    +  +  L ++
Sbjct: 565 CPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

Query: 116 NLIGEIPQEIGSLRNLEILR 135
                  Q+I     L+I R
Sbjct: 622 K-----TQDIRGCDALDIKR 636

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  181 bits (461), Expect = 9e-52
 Identities = 74/391 (18%), Positives = 138/391 (35%), Gaps = 17/391 (4%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
               L  L  L L    +      +  +   + T L  + N L     +    G   LK 
Sbjct: 52  TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDT-LVLTANPLI-FMAETALSGPKALKH 109

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L+             L + K L  + L  N  +         + KLK+L    N +    
Sbjct: 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169

Query: 122 PQEIGSLRNLEILRID-QNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPN 180
            +++ SL+    L ++   N +  I    F+ +  ++L+         +    K   + +
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

Query: 181 LEGLILGLNNFSGSIPSFFFNASKLY--YLELAYNSFSGLIPKALGQLRNLERLGLQSNY 238
           L        +     P+ F    ++    + L  + F  +          L+ L L + +
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289

Query: 239 LTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRI 298
           L+        L S LV   +LK +VL+ N  + +   S  N   S+  + +        +
Sbjct: 290 LS-------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLEL 341

Query: 299 PKE-IGNLINLTKLSLGYNNL--SGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSR 355
               + NL NL +L L ++++  S    + L  L  LQ L+L  N+        F    +
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401

Query: 356 LYKFYLNRNKLSGSIP-SCLGDLNSLRILSL 385
           L    L   +L      S   +L+ L++L+L
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  169 bits (431), Expect = 2e-47
 Identities = 82/393 (20%), Positives = 141/393 (35%), Gaps = 19/393 (4%)

Query: 2   ELGNLAELEVLVLN-NNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMC-EGLPRL 59
           ++ +L +   L LN N      I    F+ +   + L+F            +    +  L
Sbjct: 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS-LNFGGTQNLLVIFKGLKNSTIQSL 230

Query: 60  KGLYVSYNQFKGPIPNNLWHCKELS--RVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNL 117
                     +   P       E+S   ++L  + F           + L+ L L+  + 
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH- 289

Query: 118 IGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIG 177
           + E+P  +  L  L+ L +  N        +  N  +L  LS+  NT    L +   L  
Sbjct: 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC-LEN 348

Query: 178 LPNLEGLILGLNN--FSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQ 235
           L NL  L L  ++   S        N S L  L L+YN    L  +A  +   LE L L 
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 236 SNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIH 295
              L    ++     S   N   LKV+ L+ + +D         L  +++ + +   +  
Sbjct: 409 FTRLKVKDAQ-----SPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFP 462

Query: 296 GRIPKEIG---NLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCH 352
               ++      L  L  L L + +LS         LK +  +DL +N+          H
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 353 FSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
              +Y   L  N +S  +PS L  L+  R ++L
Sbjct: 523 LKGIY-LNLASNHISIILPSLLPILSQQRTINL 554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  165 bits (420), Expect = 5e-46
 Identities = 63/395 (15%), Positives = 131/395 (33%), Gaps = 24/395 (6%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
           L     L+ L      ++      + N  ++ + L   +N ++ S          +LK L
Sbjct: 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLES-LYLGSNHIS-SIKLPKGFPTEKLKVL 158

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSL--SFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGE 120
               N        ++   ++ + +SL  + N   G I     +S   + L       +  
Sbjct: 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLV 217

Query: 121 IPQEIG--SLRNLEILRIDQNNLVGFIPDTIFNMS--TLKTLSLLNNTLSGNLPSSKKLI 176
           I + +   ++++L +   +  +     P     +   ++++++L  +       ++    
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT--FH 275

Query: 177 GLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQS 236
               L+ L L   + S  +PS     S L  L L+ N F  L   +     +L  L ++ 
Sbjct: 276 CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334

Query: 237 NYLTSSTSELMSLFSALVNCKSLKVIVLAENPVD--GVLPSSIGNLSVSVEEIYMYKCNI 294
           N               L N ++L+ + L+ + ++        + NLS  ++ + +     
Sbjct: 335 NTKRLELGT-----GCLENLENLRELDLSHDDIETSDCCNLQLRNLS-HLQSLNLSYNEP 388

Query: 295 HGRIPKEIGNLINLTKLSLGYNNLSGSLP-ITLGRLKKLQGLDLQNNKFEGPIPHEFCHF 353
                +       L  L L +  L           L  L+ L+L ++  +      F   
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448

Query: 354 SRLYKFYLNRNKLSGSIPSC---LGDLNSLRILSL 385
             L    L  N            L  L  L IL L
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  165 bits (419), Expect = 7e-46
 Identities = 69/376 (18%), Positives = 129/376 (34%), Gaps = 18/376 (4%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSIS-TGLDFSNNSLTGSFPDDMCEGLPR-- 58
              + A  + L          I   + N +  S     F +          + EGL    
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE-DISPAVFEGLCEMS 255

Query: 59  LKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLI 118
           ++ + +  + F     N       L  + L+    +  +P  L   + LK L LS N   
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE 314

Query: 119 GEIPQEIGSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIG 177
                   +  +L  L I  N     +      N+  L+ L L ++ +  +   + +L  
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 178 LPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPK-ALGQLRNLERLGLQS 236
           L +L+ L L  N         F    +L  L+LA+        +     L  L+ L L  
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

Query: 237 NYLTSSTSELMSLFSALVNCKSLKVIVLAENP---VDGVLPSSIGNLSVSVEEIYMYKCN 293
           + L  S+ +            +L+ + L  N     +    +S+  L   +E + +  C+
Sbjct: 435 SLLDISSEQ------LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG-RLEILVLSFCD 487

Query: 294 IHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHF 353
           +         +L  +  + L +N L+ S    L  LK +  L+L +N     +P      
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPIL 546

Query: 354 SRLYKFYLNRNKLSGS 369
           S+     L +N L  +
Sbjct: 547 SQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  157 bits (400), Expect = 3e-43
 Identities = 68/382 (17%), Positives = 127/382 (33%), Gaps = 19/382 (4%)

Query: 10  EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQF 69
           +     N  L   IP ++ N +     L+FS N L           L  L  L ++  Q 
Sbjct: 15  KTYNCENLGLN-EIPGTLPNST---ECLEFSFNVLPTIQNTTFS-RLINLTFLDLTRCQI 69

Query: 70  KGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLR 129
                +       L  + L+ N         L     LK L+     +       + + +
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129

Query: 130 NLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLN 189
            LE L +  N++        F    LK L   NN +         +  L     L L LN
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED--MSSLQQATNLSLNLN 187

Query: 190 -NFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALG--QLRNLERLGLQSNYLTSSTSEL 246
            N    I    F+++    L         +I K L    +++L     +       +  +
Sbjct: 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 247 MSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLI 306
                 +    S++ I L ++    +  ++    S  ++E+ +   ++   +P  +  L 
Sbjct: 248 FEGLCEM----SVESINLQKHYFFNISSNTFHCFS-GLQELDLTATHLS-ELPSGLVGLS 301

Query: 307 NLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPI-PHEFCHFSRLYKFYLNRNK 365
            L KL L  N       I+      L  L ++ N     +      +   L +  L+ + 
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 366 L--SGSIPSCLGDLNSLRILSL 385
           +  S      L +L+ L+ L+L
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNL 383

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 94.3 bits (235), Expect = 4e-21
 Identities = 42/203 (20%), Positives = 76/203 (37%), Gaps = 7/203 (3%)

Query: 1   MELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLK 60
           ++L NL+ L+ L L+ N        +      +   LD +   L         + L  LK
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL-LDLAFTRLKVKDAQSPFQNLHLLK 428

Query: 61  GLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRI---PRDLGNSTKLKLLYLSFNNL 117
            L +S++               L  ++L  N F          L    +L++L LSF +L
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 118 IGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIG 177
                    SL+ +  + +  N L     + + ++  +  L+L +N +S  LPS   L  
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL--LPI 545

Query: 178 LPNLEGLILGLNNFSGSIPSFFF 200
           L     + L  N    +  + +F
Sbjct: 546 LSQQRTINLRQNPLDCTCSNIYF 568

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  172 bits (439), Expect = 1e-48
 Identities = 80/411 (19%), Positives = 136/411 (33%), Gaps = 32/411 (7%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
              +  EL+VL L+   +      +  +LS +ST L  + N +          GL  L+ 
Sbjct: 47  SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST-LILTGNPIQS-LALGAFSGLSSLQK 104

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTG-RIPRDLGNSTKLKLLYLSFNNLIGE 120
           L              + H K L  ++++ N     ++P    N T L+ L LS N +   
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 121 IPQEIGSLRNLEILRID---QNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIG 177
              ++  L  + +L +      N + FI    F    L  L+L NN  S N+  +  + G
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT-CIQG 223

Query: 178 LPNLEGLILGLNNFSGS------IPSFFFNASKLYYLELAYNS---FSGLIPKALGQLRN 228
           L  LE   L L  F           S       L   E        +   I      L N
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 229 LERLGLQSNYLTSST--SELMSL---------FSALVNCKSLKVIVLAENPVDGVLPSSI 277
           +    L S  +      S              F      K   +  L      G    S 
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343

Query: 278 GNLSVSVEEIYMYKCNIH--GRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGL 335
            +L  S+E + + +  +   G   +      +L  L L +N +   +      L++L+ L
Sbjct: 344 VDLP-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 401

Query: 336 DLQNNKFEGPIPHE-FCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           D Q++  +       F     L    ++      +       L+SL +L +
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  167 bits (425), Expect = 1e-46
 Identities = 70/399 (17%), Positives = 123/399 (30%), Gaps = 33/399 (8%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
              L+ L+ LV     L       I +L ++   L+ ++N +      +    L  L+ L
Sbjct: 96  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKE-LNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 63  YVSYNQFKGPIPNNLWHCKELS----RVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLI 118
            +S N+ +     +L    ++      + LS N     I        +L  L L  N   
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDS 213

Query: 119 GEIPQE-IGSLRNLEILRIDQNNLVGFIPDTIFNMST---LKTLSLLNNTLSGNLPSSKK 174
             + +  I  L  LE+ R+             F+ S    L  L++    L+        
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273

Query: 175 LI----GLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLE 230
           +I     L N+    L            +       +LEL    F       L  L+ L 
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYN--FGWQHLELVNCKFGQFPTLKLKSLKRLT 331

Query: 231 RLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENP--VDGVLPSSIGNLSVSVEEIY 288
               +     S            V+  SL+ + L+ N     G    S    + S++ + 
Sbjct: 332 FTSNKGGNAFS-----------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLD 379

Query: 289 MYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPI-TLGRLKKLQGLDLQNNKFEGPIP 347
           +    +   +      L  L  L   ++NL           L+ L  LD+ +        
Sbjct: 380 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 348 HEFCHFSRLYKFYLNRNKLSGSIPSC-LGDLNSLRILSL 385
             F   S L    +  N    +       +L +L  L L
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  163 bits (415), Expect = 2e-45
 Identities = 73/411 (17%), Positives = 125/411 (30%), Gaps = 46/411 (11%)

Query: 9   LEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQ 68
            + L L+ N L      S F+   +   LD S   +     D   + L  L  L ++ N 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQV-LDLSRCEIQTI-EDGAYQSLSHLSTLILTGNP 87

Query: 69  FKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIG-EIPQEIGS 127
            +            L ++              +G+   LK L ++ N +   ++P+   +
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 128 LRNLEILRIDQNNLVGFIPDTIFNMSTLK----TLSLLNNTLSGNLPSSKKLIGLPNLEG 183
           L NLE L +  N +       +  +  +     +L L  N ++   P +        L  
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA---FKEIRLHK 204

Query: 184 LILGLNNFSGSIPSFFFNA-SKLYYLELAYNSFSG------LIPKALGQLRNLERLGLQS 236
           L L  N  S ++        + L    L    F            AL  L NL     + 
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 237 NYLTSSTSELMSLFSALVN-------------------CKSLKVIVLAENPVDGVLPSSI 277
            YL     +++ LF+ L N                       + + L            +
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 278 GNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLS--GSLPITLGRLKKLQGL 335
            +L        +   +  G       +L +L  L L  N LS  G    +      L+ L
Sbjct: 325 KSLK------RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 336 DLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIP-SCLGDLNSLRILSL 385
           DL  N     +   F    +L       + L      S    L +L  L +
Sbjct: 379 DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  150 bits (381), Expect = 1e-40
 Identities = 80/410 (19%), Positives = 126/410 (30%), Gaps = 41/410 (10%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV 64
            +  +    +  N     IP    NL   +  LD S N L            P L+ L +
Sbjct: 6   VVPNITYQCMELNFYK--IPD---NLPFSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDL 59

Query: 65  SYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQE 124
           S  + +            LS + L+ N             + L+ L     NL       
Sbjct: 60  SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119

Query: 125 IGSLRNLEILRIDQNNLVGF-IPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEG 183
           IG L+ L+ L +  N +  F +P+   N++ L+ L L +N +     +   L  L  +  
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD--LRVLHQMPL 177

Query: 184 LILGLN---NFSGSIPSFFFNASKLYYLELAYNSFSGLIPK-ALGQLRNLERLGLQSNYL 239
           L L L+   N    I    F   +L+ L L  N  S  + K  +  L  LE   L     
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 240 TSSTSELMSLFSALVNCKSLKVIVLAENPVD---GVLPSSIGNLSVSVEEIYMYKCNIHG 296
            +  +      SAL    +L +       +D     +      L+ +V    +    I  
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT-NVSSFSLVSVTIER 296

Query: 297 RIPKEIGNLINLTKLSLGYNNLS-------------------GSLPITLGRLKKLQGLDL 337
                         L L                         G    +   L  L+ LDL
Sbjct: 297 VKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354

Query: 338 QNNK--FEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
             N   F+G         + L    L+ N +     + LG L  L  L  
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDF 403

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  150 bits (381), Expect = 2e-40
 Identities = 67/374 (17%), Positives = 117/374 (31%), Gaps = 24/374 (6%)

Query: 9   LEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGS-----FPDDMCEGLPRLKGLY 63
           L  L L NN  +  +  +     +                    F     EGL  L    
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 64  VSYNQ---FKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGE 120
                   +   I +       +S  SL          +D   +   + L L        
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQF 319

Query: 121 IPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPN 180
              ++ SL+ L        N    +     ++ +L+ L L  N LS     S+   G  +
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEV-----DLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 181 LEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPK-ALGQLRNLERLGLQSNYL 239
           L+ L L  N     + S F    +L +L+  +++   +        LRNL  L +   + 
Sbjct: 375 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 240 TSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIP 299
             + +             SL+V+ +A N         I     ++  + + +C +    P
Sbjct: 434 RVAFNG------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 300 KEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCH-FSRLYK 358
               +L +L  L++ +NN           L  LQ LD   N        E  H  S L  
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 547

Query: 359 FYLNRNKLSGSIPS 372
             L +N  + +   
Sbjct: 548 LNLTQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  112 bits (282), Expect = 3e-27
 Identities = 41/204 (20%), Positives = 78/204 (38%), Gaps = 3/204 (1%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
               L +LE L   ++ L      S+F        LD S+     +F   +  GL  L+ 
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEV 449

Query: 62  LYVSYNQFKGPI-PNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGE 120
           L ++ N F+    P+     + L+ + LS  Q     P    + + L++L +S NN    
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 121 IPQEIGSLRNLEILRIDQNNLVGFIPDTIFNM-STLKTLSLLNNTLSGNLPSSKKLIGLP 179
                  L +L++L    N+++      + +  S+L  L+L  N  +        L  + 
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 569

Query: 180 NLEGLILGLNNFSGSIPSFFFNAS 203
           +   L++ +     + PS      
Sbjct: 570 DQRQLLVEVERMECATPSDKQGMP 593

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 6/158 (3%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLK 60
               L+ LEVL +  N         IF  L +++  LD S   L    P      L  L+
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF-LDLSQCQLEQLSPTAF-NSLSSLQ 497

Query: 61  GLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNS-TKLKLLYLSFNNLIG 119
            L +S+N F             L  +  S N       ++L +  + L  L L+ N+   
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

Query: 120 EIPQE--IGSLRNLEILRIDQNNLVGFIPDTIFNMSTL 155
               +  +  +++   L ++   +    P     M  L
Sbjct: 558 TCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL 595

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  173 bits (441), Expect = 4e-48
 Identities = 60/406 (14%), Positives = 116/406 (28%), Gaps = 55/406 (13%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
                 + E    +          S  NL  ++  ++  N       PD +   LP L+ 
Sbjct: 462 YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD-VELYNCPNMTQLPDFLY-DLPELQS 519

Query: 62  LYVSYNQFKGP---------IPNNLWHCKELSRVSLSFNQFTG-RIPRDLGNSTKLKLLY 111
           L ++ N+             + ++     ++    + +N          L    KL LL 
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD 579

Query: 112 LSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPS 171
              N +     +  G+   L  L++D N +     D       ++ L   +N L   +P+
Sbjct: 580 CVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPN 636

Query: 172 SKKLIGLPNLEGLILGLNNFSGSIPSFF-----FNASKLYYLELAYNSFSGLIPKALGQL 226
                 +  +  +    N       +       +       + L+YN       +     
Sbjct: 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696

Query: 227 RNLERLGLQSNYLTS-STSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVE 285
             +  + L +N +TS   + L        N   L  I L  N +   L            
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFR------- 748

Query: 286 EIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQ------N 339
                              L  L+ + + YN  S S P       +L+   ++       
Sbjct: 749 ----------------ATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEG 791

Query: 340 NKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           N+     P        L +  +  N +   +   L     L IL +
Sbjct: 792 NRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDI 834

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  173 bits (439), Expect = 7e-48
 Identities = 67/431 (15%), Positives = 121/431 (28%), Gaps = 60/431 (13%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           +L N   +  L L      G +P +I  L+ +   L F  +S T S      E L     
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKV-LSFGTHSETVSGRLFGDEELTPDMS 376

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR---IPRDLGNSTKLKLLYLS-FNNL 117
               +          L + + L+   L  +         P    +   LK   +    N 
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 118 IGEIPQEIGSLRNLEILRIDQNNLVGF-------------------IPDTIFNMSTLKTL 158
           I  I + I  L  L+I+    +                           +  N+  L  +
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496

Query: 159 SLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSG---------SIPSFFFNASKLYYLE 209
            L N      LP    L  LP L+ L +  N              +        K+    
Sbjct: 497 ELYNCPNMTQLPDF--LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 210 LAYNSFSGL-IPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENP 268
           + YN+        +L ++  L  L    N +            A      L  + L  N 
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--------LEAFGTNVKLTDLKLDYNQ 606

Query: 269 VDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPK--EIGNLINLTKLSLGYNNLSG-----S 321
           ++  +P      +  VE +      +   IP      ++  +  +   YN +       S
Sbjct: 607 IEE-IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664

Query: 322 LPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLS-------GSIPSCL 374
             +   +      + L  N+ +      F   S +    L+ N ++              
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724

Query: 375 GDLNSLRILSL 385
            +   L  + L
Sbjct: 725 KNTYLLTTIDL 735

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  167 bits (425), Expect = 5e-46
 Identities = 69/394 (17%), Positives = 135/394 (34%), Gaps = 43/394 (10%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPD--------DMC 53
              NL +L  + L N      +P  +++L  + + L+ + N    +           D  
Sbjct: 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS-LNIACNRGISAAQLKADWTRLADDE 544

Query: 54  EGLPRLKGLYVSYNQFKG-PIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYL 112
           +  P+++  Y+ YN  +  P   +L    +L  +    N+         G + KL  L L
Sbjct: 545 DTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKL 602

Query: 113 SFNNLIGEIPQEIGS-LRNLEILRIDQNNLVGFIPDTIF--NMSTLKTLSLLNNTLSG-- 167
            +N +  EIP++  +    +E L    N L   IP+     ++  + ++    N +    
Sbjct: 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEG 660

Query: 168 -NLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGL-------I 219
            N+  S       N   + L  N         F   S +  + L+ N  + +        
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720

Query: 220 PKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGN 279
                    L  + L+ N LTS + +             L  + ++ N      P+   N
Sbjct: 721 DGNYKNTYLLTTIDLRFNKLTSLSDDF-----RATTLPYLSNMDVSYNCFSS-FPTQPLN 774

Query: 280 LSVSVEEIYMYKC------NIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQ 333
            S  ++   +          I  + P  I    +L +L +G N++   +   L    +L 
Sbjct: 775 SS-QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLY 830

Query: 334 GLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLS 367
            LD+ +N          C +     + L  +K  
Sbjct: 831 ILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  147 bits (372), Expect = 6e-39
 Identities = 52/333 (15%), Positives = 103/333 (30%), Gaps = 30/333 (9%)

Query: 67  NQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIG 126
            ++     NN  H    +  +   + +  +   DL N+ ++  L L+     G +P  IG
Sbjct: 286 WRYYSGTINNTIHSLNWN-FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG 344

Query: 127 SLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLP----SSKKLIGLPNLE 182
            L  L++L    ++             T        + +  +         + + L +L 
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404

Query: 183 GLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSS 242
              +  N     I      + K   +    N  +  I KA+ +L  L+ +   ++  T  
Sbjct: 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYD 463

Query: 243 TSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI 302
              +    +     K  +               S  NL   + ++ +Y C    ++P  +
Sbjct: 464 NIAVDWEDANSDYAKQYENE-----------ELSWSNLK-DLTDVELYNCPNMTQLPDFL 511

Query: 303 GNLINLTKLSLGYNNLSG---------SLPITLGRLKKLQGLDLQNNKFEG-PIPHEFCH 352
            +L  L  L++  N              L        K+Q   +  N  E  P       
Sbjct: 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK 571

Query: 353 FSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
             +L       NK+   + +  G    L  L L
Sbjct: 572 MVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKL 602

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 95.7 bits (238), Expect = 2e-21
 Identities = 35/234 (14%), Positives = 70/234 (29%), Gaps = 29/234 (12%)

Query: 1   MELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTG-----LDFSNNSLTGSFPDDMCEG 55
               ++  +  +  + N +      +I        G     +  S N +   FP ++   
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFAT 695

Query: 56  LPRLKGLYVSYNQFK-------GPIPNNLWHCKELSRVSLSFNQFTGRIPRDL--GNSTK 106
              +  + +S N           P   N  +   L+ + L FN+ T  +  D        
Sbjct: 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPY 754

Query: 107 LKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQ------NNLVGFIPDTIFNMSTLKTLSL 160
           L  + +S  N     P +  +   L+   I        N ++   P  I    +L  L +
Sbjct: 755 LSNMDVS-YNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 161 LNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNS 214
            +N +   +         P L  L +  N       +      +     L Y+ 
Sbjct: 814 GSNDIR-KVDEK----LTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  152 bits (386), Expect = 3e-41
 Identities = 75/410 (18%), Positives = 124/410 (30%), Gaps = 32/410 (7%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
              L  L  L+L  N +    P S   L+S+   L      L  S        L  LK L
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN-LVAVETKLA-SLESFPIGQLITLKKL 133

Query: 63  YVSYNQFKG-PIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN---NLI 118
            V++N      +P    +   L  V LS+N        DL    +   + LS +   N I
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193

Query: 119 GEIPQEIGSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGN----LPSSK 173
             I  +      L  L +  N     I  T   N++ L    L+           +    
Sbjct: 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253

Query: 174 KLIGLPNLEGLILGL--NNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLER 231
            + GL ++      L   N        F   + +  + LA  S   L    + +    + 
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQS 311

Query: 232 LGLQSNYLTSSTSELM-------------SLFSALVNCKSLKVIVLAENPVDGVLPSSIG 278
           L +    L    +  +             S+    V   SL  + L+ N +      S  
Sbjct: 312 LSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYS 371

Query: 279 NLS-VSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPI-TLGRLKKLQGLD 336
           +L   S+  + +        +      L  L  L   ++ L           L+KL  LD
Sbjct: 372 DLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 337 LQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSC-LGDLNSLRILSL 385
           +     +      F   + L    +  N    +  S    +  +L  L L
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  145 bits (367), Expect = 1e-38
 Identities = 72/410 (17%), Positives = 129/410 (31%), Gaps = 33/410 (8%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
             N +EL+ L L+   +      +   L  +S  L  + N +  SF      GL  L+ L
Sbjct: 52  FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN-LILTGNPIQ-SFSPGSFSGLTSLENL 109

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTG-RIPRDLGNSTKLKLLYLSFNNLIGEI 121
                +        +     L +++++ N     ++P    N T L  + LS+N +    
Sbjct: 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169

Query: 122 PQEIGSLRNLEILRID---QNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSS-----K 173
             ++  LR    + +      N + FI D  F    L  L+L  N  S N+  +      
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLA 229

Query: 174 KLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLEL--AYNSFSGLIPKALGQLRNLER 231
            L     + G      N     PS       +   E    Y +           L N+  
Sbjct: 230 GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289

Query: 232 LGLQSNYLTS--STSELMSLFS-----------ALVNCKSLKVIVLAENPVDGVLPSSIG 278
           + L    +       +     S             ++   LK + L  N   G +     
Sbjct: 290 MSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNK--GSISFKKV 347

Query: 279 NLSVSVEEIYMYKCNIH--GRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLD 336
            L  S+  + + +  +   G          +L  L L +N     +      L++LQ LD
Sbjct: 348 ALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLD 405

Query: 337 LQNNKFEGPIPHE-FCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
            Q++  +       F    +L    ++              L SL  L +
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  141 bits (357), Expect = 3e-37
 Identities = 65/388 (16%), Positives = 128/388 (32%), Gaps = 29/388 (7%)

Query: 9   LEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQ 68
              L ++ N +   I    F    +   L    N  + +      + L  L    +   +
Sbjct: 183 NLSLDMSLNPID-FIQDQAFQGIKLHE-LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240

Query: 69  FKGPIPNNLWHCKELSRV--------SLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGE 120
           FK      ++    +  +         L++                +  + L+  ++  +
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--K 298

Query: 121 IPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPN 180
             +++      + L I +  L  F      ++  LK+L+L  N  S +         LP+
Sbjct: 299 YLEDVPKHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSISFKKV----ALPS 351

Query: 181 LEGLILGLNNFSGSIPSFFFN--ASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNY 238
           L  L L  N  S S    + +   + L +L+L++N    ++      L  L+ L  Q + 
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHST 410

Query: 239 LTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRI 298
           L   T      FSA ++ + L  + ++              L+ S+  + M   +     
Sbjct: 411 LKRVTE-----FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNT 464

Query: 299 PKEI-GNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLY 357
              +  N  NLT L L    L          L +LQ L++ +N         +     L 
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524

Query: 358 KFYLNRNKLSGSIPSCLGDLNSLRILSL 385
               + N++  S         SL   +L
Sbjct: 525 TLDCSFNRIETSKGILQHFPKSLAFFNL 552

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  140 bits (356), Expect = 4e-37
 Identities = 64/367 (17%), Positives = 114/367 (31%), Gaps = 22/367 (5%)

Query: 9   LEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTG-----SFPDDMCEGLPRLKG-- 61
           L  L L  N  +  I  +     +                    F   + EGL  +    
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
             ++Y                +S +SL+          D+    K + L +     + + 
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSII-RCQLKQF 322

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
           P     L  L+ L +  N     I      + +L  L L  N LS +   S   +G  +L
Sbjct: 323 P--TLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378

Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIP-KALGQLRNLERLGLQSNYLT 240
             L L  N     + + F    +L +L+  +++   +    A   L  L  L +      
Sbjct: 379 RHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 241 SSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPK 300
                        +   SL  + +A N       S++   + ++  + + KC +      
Sbjct: 438 IDFDG------IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

Query: 301 EIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFY 360
               L  L  L++ +NNL         +L  L  LD   N+ E            L  F 
Sbjct: 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 551

Query: 361 LNRNKLS 367
           L  N ++
Sbjct: 552 LTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  139 bits (352), Expect = 1e-36
 Identities = 70/415 (16%), Positives = 118/415 (28%), Gaps = 55/415 (13%)

Query: 9   LEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQ 68
            + + L+ N L      S  N S +   LD S   +  +  D    GL  L  L ++ N 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQW-LDLSRCEIE-TIEDKAWHGLHHLSNLILTGNP 91

Query: 69  FKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIG-EIPQEIGS 127
            +   P +      L  +     +        +G    LK L ++ N +   ++P    +
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 128 LRNLEILRIDQNNLVG---------------------------FIPDTIFNMSTLKTLSL 160
           L NL  + +  N +                             FI D  F    L  L+L
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211

Query: 161 LNNTLSGNLPSS-----KKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLEL--AYN 213
             N  S N+  +       L     + G      N     PS       +   E    Y 
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 214 SFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVL 273
           +           L N+  + L    +             +      + + +    +    
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIKY--------LEDVPKHFKWQSLSIIRCQLKQFP 323

Query: 274 PSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLK--K 331
              +  L    + + +        I  +   L +L+ L L  N LS S   +   L    
Sbjct: 324 TLDLPFL----KSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 332 LQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIP-SCLGDLNSLRILSL 385
           L+ LDL  N     +   F     L       + L      S    L  L  L +
Sbjct: 378 LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  132 bits (334), Expect = 3e-34
 Identities = 71/376 (18%), Positives = 127/376 (33%), Gaps = 31/376 (8%)

Query: 21  GTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHC 80
           G++   I  + +I+      +  L+   PDD+       K + +S+N  K     +  + 
Sbjct: 2   GSLNPCIEVVPNIT--YQCMDQKLS-KVPDDI---PSSTKNIDLSFNPLKILKSYSFSNF 55

Query: 81  KELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNN 140
            EL  + LS  +      +       L  L L+ N +    P     L +LE L   +  
Sbjct: 56  SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115

Query: 141 LVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFF 200
           L       I  + TLK L++ +N +            L NL  + L  N       +   
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

Query: 201 NASKL----YYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNC 256
              +       L+++ N    +  +A   +  L  L L+ N+ +S+  +     + L N 
Sbjct: 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMK-----TCLQNL 228

Query: 257 KSLKVIVLAENPVDGVLPSSIGNLSV-------SVEEIYMYKCNIHGRIPKEIGNLINLT 309
             L V  L            I   S+       +++E  +   N       +   L N++
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288

Query: 310 KLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGS 369
            +SL   ++     +   +  K Q L +   + +            L    L  NK   S
Sbjct: 289 AMSLAGVSIKYLEDVP--KHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKG--S 341

Query: 370 IPSCLGDLNSLRILSL 385
           I      L SL  L L
Sbjct: 342 ISFKKVALPSLSYLDL 357

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  112 bits (281), Expect = 4e-27
 Identities = 50/242 (20%), Positives = 83/242 (34%), Gaps = 9/242 (3%)

Query: 4   GNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDD-MCEGLPRLKGL 62
            +L  L+ L L  N  +  I      L S+S  LD S N+L+ S        G   L+ L
Sbjct: 325 LDLPFLKSLTLTMNKGS--ISFKKVALPSLSY-LDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRD-LGNSTKLKLLYLSFNNLIGEI 121
            +S+N     +  N    +EL  +    +            +  KL  L +S+ N   + 
Sbjct: 382 DLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLPN 180
                 L +L  L++  N+        +F N + L  L L    L            L  
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV--FDTLHR 498

Query: 181 LEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLT 240
           L+ L +  NN      S +     L  L+ ++N             ++L    L +N + 
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

Query: 241 SS 242
             
Sbjct: 559 CI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 88.9 bits (221), Expect = 2e-19
 Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 2/166 (1%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
               L EL+ L   ++ L      S F        LD S  +      D +  GL  L  
Sbjct: 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK-IDFDGIFLGLTSLNT 452

Query: 62  LYVSYNQFKGPIPNNLW-HCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGE 120
           L ++ N FK    +N++ +   L+ + LS  Q             +L+LL +S NNL+  
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512

Query: 121 IPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLS 166
                  L +L  L    N +            +L   +L NN+++
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  139 bits (353), Expect = 2e-38
 Identities = 76/365 (20%), Positives = 136/365 (37%), Gaps = 36/365 (9%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
             +LAE    VL    +T  +      L SI T L  +   +  S      E L  L+ L
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT--QEELESI-TKLVVAGEKVA-SIQGI--EYLTNLEYL 71

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
            ++ NQ     P  L +  +L+ + +  N+ T      L N T L+ LYL+ +N+    P
Sbjct: 72  NLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP 127

Query: 123 QEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLE 182
             + +L  +  L +  N+ +      + NM+ L  L++  + +    P    +  L +L 
Sbjct: 128 --LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP----IANLTDLY 180

Query: 183 GLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSS 242
            L L  N      P    + + L+Y     N  + + P  +  +  L  L + +N +T  
Sbjct: 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD- 235

Query: 243 TSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI 302
                   S L N   L  + +  N +  +  +++ +L+  ++ + +    I       +
Sbjct: 236 -------LSPLANLSQLTWLEIGTNQISDI--NAVKDLT-KLKMLNVGSNQISD--ISVL 283

Query: 303 GNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLN 362
            NL  L  L L  N L       +G L  L  L L  N      P      S++      
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341

Query: 363 RNKLS 367
              + 
Sbjct: 342 NQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  128 bits (323), Expect = 5e-34
 Identities = 71/351 (20%), Positives = 130/351 (37%), Gaps = 35/351 (9%)

Query: 35  TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFT 94
             L      +   FPD     L       +        +       + ++++ ++  +  
Sbjct: 3   ATLATLPAPINQIFPD---ADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 95  GRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMST 154
               + +   T L+ L L+ N +    P  + +L  L  L I  N +       + N++ 
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTN 111

Query: 155 LKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNS 214
           L+ L L  + +S        L  L  +  L LG N+   S  S   N + L YL +  + 
Sbjct: 112 LRELYLNEDNIS----DISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESK 166

Query: 215 FSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLP 274
              + P  +  L +L  L L  N +           S L +  SL       N +  +  
Sbjct: 167 VKDVTP--IANLTDLYSLSLNYNQIED--------ISPLASLTSLHYFTAYVNQITDI-- 214

Query: 275 SSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQG 334
           + + N++  +  + +    I    P  + NL  LT L +G N +S      +  L KL+ 
Sbjct: 215 TPVANMT-RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKM 269

Query: 335 LDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           L++ +N+          + S+L   +LN N+L       +G L +L  L L
Sbjct: 270 LNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (315), Expect = 7e-33
 Identities = 75/340 (22%), Positives = 133/340 (39%), Gaps = 56/340 (16%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
            +  L  LE L LN N +T   P S                             L +L  
Sbjct: 61  GIEYLTNLEYLNLNGNQITDISPLS----------------------------NLVKLTN 92

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           LY+  N+      + L +   L  + L+ +  +   P  L N TK+  L L  N+ + ++
Sbjct: 93  LYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL 148

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
              + ++  L  L + ++ +    P  I N++ L +LSL  N +         L  L +L
Sbjct: 149 S-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE----DISPLASLTSL 201

Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241
                 +N  +   P    N ++L  L++  N  + L P  L  L  L  L + +N ++ 
Sbjct: 202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257

Query: 242 STSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKE 301
                    +A+ +   LK++ +  N +  +  S + NLS  +  +++    +     + 
Sbjct: 258 --------INAVKDLTKLKMLNVGSNQISDI--SVLNNLS-QLNSLFLNNNQLGNEDMEV 306

Query: 302 IGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNK 341
           IG L NLT L L  N+++   P  L  L K+   D  N  
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  106 bits (266), Expect = 6e-26
 Identities = 62/268 (23%), Positives = 104/268 (38%), Gaps = 27/268 (10%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
            L NL  L  L LN + ++   P  + NL+ +   L+   N             +  L  
Sbjct: 105 ALQNLTNLRELYLNEDNISDISP--LANLTKM-YSLNLGANHNLSDLSP--LSNMTGLNY 159

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L V+ ++ K   P  + +  +L  +SL++NQ     P  L + T L       N +    
Sbjct: 160 LTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT 215

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
           P  + ++  L  L+I  N +    P  + N+S L  L +  N +S ++ +   +  L  L
Sbjct: 216 P--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS-DINA---VKDLTKL 267

Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241
           + L +G N  S    S   N S+L  L L  N       + +G L NL  L L  N++T 
Sbjct: 268 KMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 242 STSELMSLFSALVNCKSLKVIVLAENPV 269
                      L +   +     A   +
Sbjct: 326 --------IRPLASLSKMDSADFANQVI 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  136 bits (345), Expect = 2e-36
 Identities = 91/383 (23%), Positives = 152/383 (39%), Gaps = 40/383 (10%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
            +  L  L  +  +NN LT   P  + NL+ +   +  +NN +    P      L  L G
Sbjct: 63  GVEYLNNLTQINFSNNQLTDITP--LKNLTKL-VDILMNNNQIADITPL---ANLTNLTG 116

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L +  NQ     P  L +   L+R+ LS N  +      L   T L+ L    N +    
Sbjct: 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLK 171

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
           P  + +L  LE L I  N +       +  ++ L++L   NN +S   P    L  L NL
Sbjct: 172 P--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP----LGILTNL 223

Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241
           + L L  N           + + L  L+LA N  S L P  L  L  L  L L +N +++
Sbjct: 224 DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279

Query: 242 STSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKE 301
                    S L    +L  + L EN ++ +  S I NL  ++  + +Y  NI    P  
Sbjct: 280 --------ISPLAGLTALTNLELNENQLEDI--SPISNLK-NLTYLTLYFNNISDISP-- 326

Query: 302 IGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYL 361
           + +L  L +L    N +S     +L  L  +  L   +N+     P    + +R+ +  L
Sbjct: 327 VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382

Query: 362 NRNKLSGSIPSCLGDLNSLRILS 384
           N    + +  +   +++    + 
Sbjct: 383 NDQAWTNAPVNYKANVSIPNTVK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  135 bits (343), Expect = 5e-36
 Identities = 98/383 (25%), Positives = 145/383 (37%), Gaps = 42/383 (10%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
              LAE    VL    +T T+     +L  ++T L      +     D + E L  L  +
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTT-LQADRLGIKS--IDGV-EYLNNLTQI 73

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
             S NQ     P  L +  +L  + ++ NQ     P  L N T L  L L  N +    P
Sbjct: 74  NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP 129

Query: 123 QEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLE 182
             + +L NL  L +  N +       +  +++L+ LS  N      +   K L  L  LE
Sbjct: 130 --LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGN-----QVTDLKPLANLTTLE 180

Query: 183 GLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSS 242
            L +  N  S    S     + L  L    N  S + P  LG L NL+ L L  N L   
Sbjct: 181 RLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD- 235

Query: 243 TSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI 302
                     L +  +L  + LA N +  + P  +  L+  + E+ +    I    P  +
Sbjct: 236 -------IGTLASLTNLTDLDLANNQISNLAP--LSGLT-KLTELKLGANQISNISP--L 283

Query: 303 GNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLN 362
             L  LT L L  N L    PI    LK L  L L  N      P      ++L + +  
Sbjct: 284 AGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339

Query: 363 RNKLSGSIPSCLGDLNSLRILSL 385
            NK+S    S L +L ++  LS 
Sbjct: 340 NNKVSD--VSSLANLTNINWLSA 360

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  113 bits (285), Expect = 6e-28
 Identities = 86/385 (22%), Positives = 140/385 (36%), Gaps = 54/385 (14%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
            L NL +L  +++NNN +    P  + NL++++  L   NN +T   P    + L  L  
Sbjct: 85  PLKNLTKLVDILMNNNQIADITP--LANLTNLTG-LTLFNNQITDIDP---LKNLTNLNR 138

Query: 62  LYVSYNQFKGPIP-------------------NNLWHCKELSRVSLSFNQFTGRIPRDLG 102
           L +S N                            L +   L R+ +S N+ +      L 
Sbjct: 139 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLA 196

Query: 103 NSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLN 162
             T L+ L  + N +    P  +G L NL+ L ++ N L      T+ +++ L  L L N
Sbjct: 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 252

Query: 163 NTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKA 222
           N +S   P    L GL  L  L LG N  S   P      + L  LEL  N    + P  
Sbjct: 253 NQISNLAP----LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-- 304

Query: 223 LGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSV 282
           +  L+NL  L L  N ++          S + +   L+ +    N V     SS+ NL+ 
Sbjct: 305 ISNLKNLTYLTLYFNNISD--------ISPVSSLTKLQRLFFYNNKVSD--VSSLANLT- 353

Query: 283 SVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKF 342
           ++  +      I    P  + NL  +T+L L     + +       +     +       
Sbjct: 354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

Query: 343 EGPIPHEFCHFSRLYKFYLNRNKLS 367
             P            +  +  N  S
Sbjct: 412 IAPA--TISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  111 bits (280), Expect = 2e-27
 Identities = 72/346 (20%), Positives = 119/346 (34%), Gaps = 35/346 (10%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
            L  L  L+ L   N +        + NL+++   LD S+N ++      +   L  L+ 
Sbjct: 151 ALSGLTSLQQLSFGNQVTD---LKPLANLTTL-ERLDISSNKVSD--ISVL-AKLTNLES 203

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L  + NQ     P  L     L  +SL+ NQ        L + T L  L L+ N +    
Sbjct: 204 LIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 259

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
           P  +  L  L  L++  N +    P  +  ++ L  L L  N L    P    +  L NL
Sbjct: 260 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----ISNLKNL 311

Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241
             L L  NN S   P    + +KL  L    N  S +    L  L N+  L    N ++ 
Sbjct: 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISD 367

Query: 242 STSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKE 301
                    + L N   +  + L +        +   N+S+      +         P  
Sbjct: 368 --------LTPLANLTRITQLGLNDQAWTNAPVNYKANVSI---PNTVKNVTGALIAPAT 416

Query: 302 IGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIP 347
           I +  + T+  + +N  S           +   +      F G + 
Sbjct: 417 ISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  130 bits (328), Expect = 1e-33
 Identities = 74/410 (18%), Positives = 134/410 (32%), Gaps = 31/410 (7%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
             +L+ L  L+L  N +  ++    F+  S    L     +L  S  +     L  LK L
Sbjct: 72  YQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKEL 129

Query: 63  YVSYNQFK-GPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN---NLI 118
            V++N  +   +P    +   L  + LS N+       DL    ++ LL LS +   N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 119 GEIPQEIGSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGN----LPSSK 173
             I         L  L +  N     +  T    ++ L+   L+                
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 174 KLIGLPNLEGLIL---GLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKA-LGQLRNL 229
            L GL NL         L+ +   I   F   + +    L   +   +   +     ++L
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL 309

Query: 230 ERLGLQSNYLTS-STSELMSL---------FSALVNCKSLKVIVLAENPVD--GVLPSSI 277
           E +  +     +     L  L           + V+  SL+ + L+ N +   G    S 
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 278 GNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSG-SLPITLGRLKKLQGLD 336
              + S++ + +    +   +      L  L  L   ++NL   S       L+ L  LD
Sbjct: 370 FGTT-SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 337 LQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPS-CLGDLNSLRILSL 385
           + +          F   S L    +  N    +       +L +L  L L
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  129 bits (325), Expect = 5e-33
 Identities = 77/414 (18%), Positives = 139/414 (33%), Gaps = 40/414 (9%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
             +  EL+VL L+   +      +  +LS +ST L  + N +  S       GL  L+ L
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST-LILTGNPIQ-SLALGAFSGLSSLQKL 105

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFT-GRIPRDLGNSTKLKLLYLSFNNLIGEI 121
                         + H K L  ++++ N     ++P    N T L+ L LS N +    
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 122 PQEIGSLRNLEILRID---QNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGL 178
             ++  L  + +L +      N + FI    F    L  L+L NN  S N+     + GL
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM-KTCIQGL 224

Query: 179 PNLE------GLILGLNNFSGSIPSFFFNASKLYYLELAYNS---FSGLIPKALGQLRNL 229
             LE      G      N      S       L   E        +   I      L N+
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 230 ERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVS------ 283
               L S  +          FS     + L+++         +   S+  L+ +      
Sbjct: 285 SSFSLVSVTIERVKD-----FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 339

Query: 284 ---------VEEIYMYKCNIH--GRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKL 332
                    +E + + +  +   G   +      +L  L L +N +  ++      L++L
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQL 398

Query: 333 QGLDLQNNKFEGPIPHE-FCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           + LD Q++  +       F     L    ++      +       L+SL +L +
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  123 bits (311), Expect = 3e-31
 Identities = 69/386 (17%), Positives = 122/386 (31%), Gaps = 21/386 (5%)

Query: 9   LEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQ 68
            + L L+ N L      S F+   +   LD S   +  +  D   + L  L  L ++ N 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPEL-QVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 69  FKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNL-IGEIPQEIGS 127
            +            L ++              +G+   LK L ++ N +   ++P+   +
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 128 LRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSS--KKLIGLPNLEGLI 185
           L NLE L +  N +       +  +  +  L+L  + LS N  +           L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD-LSLNPMNFIQPGAFKEIRLHKLT 206

Query: 186 LGLNNFSGSIPSFFFNA-SKLYYLELAYNSFSG---LIPKALGQLRNLERLGLQSNYLTS 241
           L  N  S ++        + L    L    F     L       L  L  L ++   L  
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 242 STSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKE 301
               L  +        ++    L    ++ V   S       +E +              
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT----- 321

Query: 302 IGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNK--FEGPIPHEFCHFSRLYKF 359
              L +L +L+   N    +   +   L  L+ LDL  N   F+G         + L   
Sbjct: 322 -LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 360 YLNRNKLSGSIPSCLGDLNSLRILSL 385
            L+ N +  ++ S    L  L  L  
Sbjct: 379 DLSFNGVI-TMSSNFLGLEQLEHLDF 403

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  115 bits (291), Expect = 2e-28
 Identities = 70/399 (17%), Positives = 134/399 (33%), Gaps = 34/399 (8%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIF----NLSSISTGLDFSNNSLTGSFPDDMCEGLPR 58
             NL  LE L L++N +  +I  +       +  ++  LD S N +         + + R
Sbjct: 145 FSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-R 201

Query: 59  LKGLYVSYNQFKGPIPNN-LWHCKELSRVSL------SFNQFTGRIPRDLGNSTKLKLLY 111
           L  L +  N     +    +     L    L      +           L     L +  
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 112 LSFNNLIGEIPQEIGSLRNLEILRID--QNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNL 169
                L   +   I     L  +      +  +  + D  +N    + L L+N       
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG-WQHLELVNCKFG-QF 319

Query: 170 PSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYN--SFSGLIPKALGQLR 227
           P+    + L +L+ L    +N  G+  S   +   L +L+L+ N  SF G   ++     
Sbjct: 320 PT----LKLKSLKRLTF-TSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 228 NLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEI 287
           +L+ L L  N + +       + S  +  + L+ +    + +  +   S+     ++  +
Sbjct: 374 SLKYLDLSFNGVIT-------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 288 YMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSL-PITLGRLKKLQGLDLQNNKFEGPI 346
            +   +           L +L  L +  N+   +  P     L+ L  LDL   + E   
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 347 PHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           P  F   S L    +  N+L          L SL+ + L
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  103 bits (258), Expect = 4e-24
 Identities = 64/347 (18%), Positives = 118/347 (34%), Gaps = 31/347 (8%)

Query: 9   LEVLVLNNNLLTGTIPASIFN------LSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
           L  L L NN  +  +  +         +  +  G   +  +L   F     EGL  L   
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE-KFDKSALEGLCNLTIE 260

Query: 63  YVSYNQ---FKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNS--TKLKLLYLSFNNL 117
                    +   I +       +S  SL       R+     N     L+L+   F   
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQF 319

Query: 118 IGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIG 177
                     L++L+ L    N       +   ++ +L+ L L  N LS     S+   G
Sbjct: 320 PT------LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 178 LPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIP-KALGQLRNLERLGLQS 236
             +L+ L L  N    ++ S F    +L +L+  +++   +        LRNL  L +  
Sbjct: 372 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 237 NYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHG 296
            +   + +             SL+V+ +A N         I     ++  + + +C +  
Sbjct: 431 THTRVAFNG------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE- 483

Query: 297 RIPKEI-GNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKF 342
           ++      +L +L  L++  N L         RL  LQ + L  N +
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.6 bits (220), Expect = 2e-19
 Identities = 59/318 (18%), Positives = 103/318 (32%), Gaps = 44/318 (13%)

Query: 9   LEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQ 68
           +E   L            +FN  +  +     + ++          G   L+ +   + Q
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318

Query: 69  FKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNL--IGEIPQEIG 126
           F           K L R++ + N+          +   L+ L LS N L   G   Q   
Sbjct: 319 FPT------LKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 127 SLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLIL 186
              +L+ L +  N ++  +      +  L+ L   ++ L   +      + L NL  L +
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDI 428

Query: 187 GLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPK-ALGQLRNLERLGLQSNYLTSSTSE 245
              +   +    F   S L  L++A NSF          +LRNL  L L    L   +  
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP- 487

Query: 246 LMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNL 305
                +A  +  SL+V+ +A N +  V       L+                        
Sbjct: 488 -----TAFNSLSSLQVLNMASNQLKSVPDGIFDRLT------------------------ 518

Query: 306 INLTKLSLGYNNLSGSLP 323
            +L K+ L  N    S P
Sbjct: 519 -SLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.8 bits (192), Expect = 9e-16
 Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 5/177 (2%)

Query: 1   MELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLK 60
                   L+ L L+ N +  T+ ++   L  +   LDF +++L       +   L  L 
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH-LDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 61  GLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRD-LGNSTKLKLLYLSFNNLIG 119
            L +S+   +            L  + ++ N F      D       L  L LS    + 
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS-QCQLE 483

Query: 120 EIPQEI-GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKL 175
           ++      SL +L++L +  N L          +++L+ + L  N    + P    L
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 9/197 (4%)

Query: 5   NLAELEVLVLNNNLLT--GTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
           +L  LE L L+ N L+  G    S F  +S+   LD S N +  +   +   GL +L+ L
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY-LDLSFNGVI-TMSSN-FLGLEQLEHL 401

Query: 63  YVSYNQFKGPIPNNLWH-CKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
              ++  K     +++   + L  + +S               + L++L ++ N+     
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 122 PQEI-GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPN 180
             +I   LRNL  L + Q  L    P    ++S+L+ L++ +N L  ++P       L +
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGI-FDRLTS 519

Query: 181 LEGLILGLNNFSGSIPS 197
           L+ + L  N +  S P 
Sbjct: 520 LQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.5 bits (186), Expect = 5e-15
 Identities = 43/215 (20%), Positives = 73/215 (33%), Gaps = 9/215 (4%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTG-SFPDDMCEGLPRLKGLY 63
            L  L+ L   +N        S  +L S+   LD S N L+          G   LK L 
Sbjct: 323 KLKSLKRLTFTSNKGGNAF--SEVDLPSLEF-LDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 64  VSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRD-LGNSTKLKLLYLSFNNLIGEIP 122
           +S+N     + +N    ++L  +    +            +   L  L +S  +      
Sbjct: 380 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 123 QEIGSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
                L +LE+L++  N+        IF  +  L  L L    L    P++     L +L
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA--FNSLSSL 496

Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFS 216
           + L +  N         F   + L  + L  N + 
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  130 bits (329), Expect = 3e-33
 Identities = 73/390 (18%), Positives = 129/390 (33%), Gaps = 32/390 (8%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV 64
            L   E L+L+ N +  T+ AS F        L+  +     +   +    LP L+ L +
Sbjct: 22  VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 65  SYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRI--PRDLGNSTKLKLLYLSFNNLIG-EI 121
             ++     P+       L  + L F   +  +       N   L  L LS N +    +
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTI--FNMSTLKTLSLLNNTL----SGNLPSSKKL 175
               G L +L+ +    N +       +      TL   SL  N+L    S +       
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 176 IGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQ 235
                LE L +  N ++  I   F N            + S     +L    ++   G  
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSN------------AISKSQAFSLILAHHIMGAGFG 248

Query: 236 SNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIH 295
            + +        + F+ L    S++ + L+   V  +       L   ++ + +    I+
Sbjct: 249 FHNIKDPDQ---NTFAGLARS-SVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKIN 303

Query: 296 GRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSR 355
               +    L NL  L+L YN L          L K+  +DLQ N         F    +
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363

Query: 356 LYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           L    L  N L     + +  + S+  + L
Sbjct: 364 LQTLDLRDNAL-----TTIHFIPSIPDIFL 388

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  129 bits (326), Expect = 8e-33
 Identities = 65/367 (17%), Positives = 118/367 (32%), Gaps = 24/367 (6%)

Query: 37  LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR 96
             +   +LT   P      L   + L +S+N  +    ++    ++L  + L        
Sbjct: 9   AFYRFCNLT-QVPQV----LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 97  IPRD-LGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFI--PDTIFNMS 153
           I ++   N   L++L L  + +    P     L +L  LR+    L   +       N+ 
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 154 TLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFF--FNASKLYYLELA 211
            L  L L  N +  +L        L +L+ +    N                 L +  LA
Sbjct: 124 ALTRLDLSKNQIR-SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 212 YNSFSGLIPKALGQLRN------LERLGLQSNYLTSSTSEL------MSLFSALVNCKSL 259
            NS    +    G+  N      LE L +  N  T   +         S   +L+    +
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242

Query: 260 KVIVLAENPVDGVLPSSIGNL-SVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNL 318
                  + +     ++   L   SV  + +    +     +    L +L  L+L YN +
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302

Query: 319 SGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLN 378
           +         L  LQ L+L  N         F    ++    L +N ++         L 
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362

Query: 379 SLRILSL 385
            L+ L L
Sbjct: 363 KLQTLDL 369

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  122 bits (308), Expect = 1e-30
 Identities = 89/427 (20%), Positives = 148/427 (34%), Gaps = 52/427 (12%)

Query: 3   LGNLAELEVLVLNNNLLT-GTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLK 60
              L  L  L L    L+   +    F NL +++  LD S N +   +       L  LK
Sbjct: 93  FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR-LDLSKNQIRSLYLHPSFGKLNSLK 151

Query: 61  GLYVSYNQFKGPIPNNLW--HCKELSRVSLSFNQFTGRIPRDLGNSTK------LKLLYL 112
            +  S NQ      + L     K LS  SL+ N    R+  D G          L++L +
Sbjct: 152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV 211

Query: 113 SFNNLIGEIP------------QEIGSLRNLEILRIDQNNLVGFIPDTIFNM--STLKTL 158
           S N    +I               +    ++       +N+     +T   +  S+++ L
Sbjct: 212 SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271

Query: 159 SLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGL 218
            L +  +            L +L+ L L  N  +      F+    L  L L+YN    L
Sbjct: 272 DLSHGFVFSLNSRV--FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329

Query: 219 IPKALGQLRNLERLGLQSNYLTS----STSELMSL---------FSALVNCKSLKVIVLA 265
                  L  +  + LQ N++      +   L  L          + +    S+  I L+
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLS 389

Query: 266 ENPVDGVLPSSIGNLSVSVEEIYMYKCNIHG-RIPKEIGNLINLTKLSLGYNNLSG-SLP 323
            N +      ++  ++++   I++ +  +    I   +  + +L  L L  N  S  S  
Sbjct: 390 GNKL-----VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444

Query: 324 ITLGRLKKLQGLDLQNNKFEGPIPHE-----FCHFSRLYKFYLNRNKLSGSIPSCLGDLN 378
            T      L+ L L  N  +     E     F   S L   YLN N L+   P     L 
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504

Query: 379 SLRILSL 385
           +LR LSL
Sbjct: 505 ALRGLSL 511

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  116 bits (292), Expect = 2e-28
 Identities = 84/422 (19%), Positives = 151/422 (35%), Gaps = 46/422 (10%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGL--PRL 59
             NL  L  L L+ N +        F  L+S+ + +DFS+N +     +   E L    L
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS-IDFSSNQIF-LVCEHELEPLQGKTL 176

Query: 60  KGLYVSYNQFKGPIPNNLWHCKE------LSRVSLSFNQFTGRIPRDLGN---------- 103
               ++ N     +  +   C        L  + +S N +T  I  +  N          
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236

Query: 104 --STKLKLLYLSFNNLIGEIPQEI---GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTL 158
             +  +      F+N I +  Q      +  ++  L +    +          +  LK L
Sbjct: 237 ILAHHIMGAGFGFHN-IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295

Query: 159 SLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGL 218
           +L  N ++     +    GL NL+ L L  N       S F+   K+ Y++L  N  + +
Sbjct: 296 NLAYNKINKIADEA--FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353

Query: 219 IPKALGQLRNLERLGLQSNYLTS--STSELMSLFSALVNCKSLK-------VIVLAENPV 269
             +    L  L+ L L+ N LT+      +  +F +     +L        +I L+EN +
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413

Query: 270 DGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI-GNLINLTKLSLGYNNLSGS-----LP 323
           + +           ++ + + +         +      +L +L LG N L  +       
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473

Query: 324 ITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRIL 383
                L  LQ L L +N      P  F H + L    LN N+L+    + L    +L IL
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEIL 531

Query: 384 SL 385
            +
Sbjct: 532 DI 533

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  114 bits (288), Expect = 6e-28
 Identities = 72/421 (17%), Positives = 150/421 (35%), Gaps = 49/421 (11%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSIS-TGLDFSNNSLTGSFPDDMCEGL----- 56
            G L  L+ +  ++N +       +  L   + +    + NSL      D  + +     
Sbjct: 144 FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203

Query: 57  PRLKGLYVSYNQFKGPIPNNLWHC------------KELSRVSLSFNQFTGRIPRDLGN- 103
             L+ L VS N +   I  N  +               +      F+             
Sbjct: 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263

Query: 104 -STKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLN 162
             + ++ L LS   +     +   +L++L++L +  N +     +  + +  L+ L+L  
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323

Query: 163 NTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKA 222
           N L     S+    GLP +  + L  N+ +      F    KL  L+L  N+ +      
Sbjct: 324 NLLGELYSSN--FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----T 376

Query: 223 LGQLRNLERLGLQSNYLTSSTSELMSL---------------FSALVNCKSLKVIVLAEN 267
           +  + ++  + L  N L +     ++                   L+    L++++L +N
Sbjct: 377 IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN 436

Query: 268 PVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI-----GNLINLTKLSLGYNNLSGSL 322
                      + + S+E++++ +  +      E+       L +L  L L +N L+   
Sbjct: 437 RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496

Query: 323 PITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRI 382
           P     L  L+GL L +N+      ++    + L    ++RN+L    P     L+ L I
Sbjct: 497 PGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLSVLDI 554

Query: 383 L 383
            
Sbjct: 555 T 555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 96.8 bits (241), Expect = 7e-22
 Identities = 61/299 (20%), Positives = 103/299 (34%), Gaps = 26/299 (8%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
              L +L+VL L  N +      + + L ++   L+ S N L          GLP++  +
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQV-LNLSYNLLG-ELYSSNFYGLPKVAYI 343

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
            +  N             ++L  + L  N  T      +     +  ++LS N L+    
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPK 398

Query: 123 QEIGSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
             +       ++ + +N L           +  L+ L L  N  S +    +     P+L
Sbjct: 399 INL----TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS-SCSGDQTPSENPSL 453

Query: 182 EGLILGLNNFSGSI-----PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQS 236
           E L LG N    +         F   S L  L L +N  + L P     L  L  L L S
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513

Query: 237 NYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIH 295
           N LT          S      +L+++ ++ N +    P    +LSV       + C   
Sbjct: 514 NRLTV--------LSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECE 564

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  123 bits (311), Expect = 2e-32
 Identities = 52/296 (17%), Positives = 96/296 (32%), Gaps = 24/296 (8%)

Query: 98  PRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKT 157
                +S+  + LY   +  +      +   +       ++ +      +     S    
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-----SNNPQ 59

Query: 158 LSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSG 217
           +               +    P    L L         P   F  S L ++ +       
Sbjct: 60  IETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME 118

Query: 218 LIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSI 277
           L P  + Q   LE L L  N L +       L +++ +   L+ + +   P    LP  +
Sbjct: 119 L-PDTMQQFAGLETLTLARNPLRA-------LPASIASLNRLRELSIRACPELTELPEPL 170

Query: 278 GNLS--------VSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRL 329
            +          V+++ + +    I   +P  I NL NL  L +  + LS +L   +  L
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHL 228

Query: 330 KKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
            KL+ LDL+        P  F   + L +  L       ++P  +  L  L  L L
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  121 bits (307), Expect = 6e-32
 Identities = 59/368 (16%), Positives = 117/368 (31%), Gaps = 62/368 (16%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
              + +  E L    +         +          D +         +         + 
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYN-ADRNRWHSAWRQAN-----SNNPQI 60

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSL--SFNQFTGRIPRDLGNSTKLKLLYLSFNNLIG 119
              +    K    + L    +  RV+L         + P      + L+ + +    L+ 
Sbjct: 61  ETRTGRALKA-TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM- 117

Query: 120 EIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLP 179
           E+P  +     LE L + +N L   +P +I +++ L+ LS+        LP     +   
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEP---LAST 173

Query: 180 NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL 239
           +  G   GL N              L  L L +     L P ++  L+NL+ L ++++ L
Sbjct: 174 DASGEHQGLVN--------------LQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPL 218

Query: 240 TSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIP 299
           ++                               L  +I +L   +EE+ +  C      P
Sbjct: 219 SA-------------------------------LGPAIHHLP-KLEELDLRGCTALRNYP 246

Query: 300 KEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKF 359
              G    L +L L   +   +LP+ + RL +L+ LDL+       +P            
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

Query: 360 YLNRNKLS 367
            +  +  +
Sbjct: 307 LVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  109 bits (274), Expect = 3e-27
 Identities = 50/255 (19%), Positives = 91/255 (35%), Gaps = 20/255 (7%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           E         L L +  L    P   F LS +   +      L    PD M +    L+ 
Sbjct: 76  EDATQPGRVALELRSVPLP-QFPDQAFRLSHLQH-MTIDAAGLM-ELPDTMQQ-FAGLET 131

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNS---------TKLKLLYL 112
           L ++ N  +  +P ++     L  +S+        +P  L ++           L+ L L
Sbjct: 132 LTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 113 SFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSS 172
            +  +   +P  I +L+NL+ L+I  + L   +   I ++  L+ L L   T   N P  
Sbjct: 191 EWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 173 KKLIG-LPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLER 231
               G    L+ LIL   +   ++P      ++L  L+L        +P  + QL     
Sbjct: 249 ---FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305

Query: 232 LGLQSNYLTSSTSEL 246
           + +  +         
Sbjct: 306 ILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.4 bits (225), Expect = 2e-20
 Identities = 30/182 (16%), Positives = 58/182 (31%), Gaps = 14/182 (7%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSIS--------TGLDFSNNSLTGSFPDDMC 53
            + +L  L  L +        +P  + +  +            L      +  S P  + 
Sbjct: 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA 203

Query: 54  EGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLS 113
             L  LK L +  +     +   + H  +L  + L         P   G    LK L L 
Sbjct: 204 N-LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261

Query: 114 FNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNN---TLSGNLP 170
             + +  +P +I  L  LE L +     +  +P  I  +     + +  +    L  + P
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP 321

Query: 171 SS 172
            +
Sbjct: 322 VA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.1 bits (193), Expect = 3e-16
 Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 15/193 (7%)

Query: 193 GSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSA 252
           GS      ++S    L    ++        L Q +          +     +   +    
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61

Query: 253 LVNCKSLKVIVLAENPVDGVLPSSIGNL-SVSVEEIYMYKCNIHGRIPKEIGNLINLTKL 311
               ++LK                + +        + +    +  + P +   L +L  +
Sbjct: 62  TRTGRALK-----------ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHM 109

Query: 312 SLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIP 371
           ++    L   LP T+ +   L+ L L  N     +P      +RL +  +        +P
Sbjct: 110 TIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELP 167

Query: 372 SCLGDLNSLRILS 384
             L   ++     
Sbjct: 168 EPLASTDASGEHQ 180

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  123 bits (311), Expect = 3e-31
 Identities = 64/396 (16%), Positives = 127/396 (32%), Gaps = 25/396 (6%)

Query: 9   LEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQ 68
           ++ L L+ N +T      +   +++   L   ++ +  +   D    L  L+ L +S N 
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQV-LILKSSRIN-TIEGDAFYSLGSLEHLDLSDNH 85

Query: 69  FKGPIPNNLWHCKELSRVSLSFNQFTG-RIPRDLGNSTKLKLLYLSFNNLIGEIPQE-IG 126
                 +       L  ++L  N +    +     N T L+ L +       EI +    
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 127 SLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLIL 186
            L +L  L I   +L  +   ++ ++  +  L+L  +  +  L        L ++  L L
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF--ADILSSVRYLEL 203

Query: 187 GLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSEL 246
              N +    S          ++      S L  ++  +L  L R  L+ + +      L
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 247 MSLFS------------ALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNI 294
             L                V   +++ + + +  +   L +    L   V+ I +    +
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE-KVKRITVENSKV 322

Query: 295 HGRIPKEIGNLINLTKLSLGYNNLSGSLPIT---LGRLKKLQGLDLQNNKFE--GPIPHE 349
                    +L +L  L L  N +           G    LQ L L  N           
Sbjct: 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382

Query: 350 FCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
                 L    ++RN     +P        +R L+L
Sbjct: 383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  119 bits (301), Expect = 6e-30
 Identities = 67/364 (18%), Positives = 127/364 (34%), Gaps = 20/364 (5%)

Query: 37  LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR 96
            D  + S T S P  +      +K L +S+N+       +L  C  L  + L  ++    
Sbjct: 10  CDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65

Query: 97  IPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIF-NMSTL 155
                 +   L+ L LS N+L        G L +L+ L +  N        ++F N++ L
Sbjct: 66  EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125

Query: 156 KTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSF 215
           +TL + N      +       GL +L  L +   +          +   +++L L  +  
Sbjct: 126 QTLRIGNVETFSEIRRI-DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184

Query: 216 SGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCK--SLKVIVLAENPVDGVL 273
           + L+      L ++  L L+   L       + +       K  + +  VL +   + +L
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

Query: 274 PSSIGNLSVSVEEIYMYKCNIHGRIPKEIGN---------LINLTKLSLGYNNLSGSLPI 324
                 L +S  E      N  G       +          + + +L +    L   L  
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304

Query: 325 TLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSI---PSCLGDLNSLR 381
               L+K++ + ++N+K          H   L    L+ N +        +C G   SL+
Sbjct: 305 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364

Query: 382 ILSL 385
            L L
Sbjct: 365 TLVL 368

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  116 bits (293), Expect = 8e-29
 Identities = 69/390 (17%), Positives = 132/390 (33%), Gaps = 25/390 (6%)

Query: 14  LNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPI 73
             +   T +IP+    L++    LD S N +T             L+ L +  ++     
Sbjct: 12  GRSRSFT-SIPS---GLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIE 66

Query: 74  PNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIG-EIPQEIGSLRNLE 132
            +  +    L  + LS N  +       G  + LK L L  N      +     +L NL+
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 133 ILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNF 191
            LRI        I    F  +++L  L +   +L      S  L  + ++  L L L+  
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS--LKSIRDIHHLTLHLSES 184

Query: 192 SGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS----STSELM 247
           +  +  F    S + YLEL   + +      L        +   +   +     S +EL+
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

Query: 248 SLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLS-------VSVEEIYMYKCNIHGRIPK 300
            L   ++    ++      N +    PS    +S       V++  +++ +  +   +  
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304

Query: 301 EIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHF---SRLY 357
               L  + ++++  + +          LK L+ LDL  N                  L 
Sbjct: 305 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364

Query: 358 KFYLNRNKLS--GSIPSCLGDLNSLRILSL 385
              L++N L         L  L +L  L +
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  116 bits (292), Expect = 1e-28
 Identities = 60/402 (14%), Positives = 133/402 (33%), Gaps = 34/402 (8%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
            G L+ L+ L L  N        S+F NL+++ T L   N             GL  L  
Sbjct: 94  FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT-LRIGNVETFSEIRRIDFAGLTSLNE 152

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L +     +     +L   +++  ++L  ++    +       + ++ L L   NL    
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMST-------LKTLSLLNNTLSGNLPSSKK 174
              +        ++           ++   +         L  +   + TL+G    +  
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272

Query: 175 LIG---------LPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQ 225
                          +  L +        + + +    K+  + +  +    +       
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH 332

Query: 226 LRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVD--GVLPSSIGNLSVS 283
           L++LE L L  N +     +  +   A     SL+ +VL++N +         +  L  +
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWP---SLQTLVLSQNHLRSMQKTGEILLTLK-N 388

Query: 284 VEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFE 343
           +  + + +   H  +P        +  L+L    +     +     + L+ LD+ NN   
Sbjct: 389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSNNN-- 442

Query: 344 GPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
             +        RL + Y++RNKL  ++P        L ++ +
Sbjct: 443 --LDSFSLFLPRLQELYISRNKLK-TLPDASL-FPVLLVMKI 480

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 99.4 bits (248), Expect = 6e-23
 Identities = 64/404 (15%), Positives = 128/404 (31%), Gaps = 51/404 (12%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLK 60
              NL  L+ L + N      I    F  L+S++  L+    SL  ++     + +  + 
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE-LEIKALSLR-NYQSQSLKSIRDIH 175

Query: 61  GLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNL--- 117
            L +  ++    +         +  + L            L        +          
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235

Query: 118 -------IGEIPQEIGSLRNLEILRIDQNNLVGFIP---DTIFNMSTLKTLSLLNNTLSG 167
                  + ++ + I  L  +E      N L  F P   D +  +  ++T+++    +  
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295

Query: 168 NLPS---SKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPK--- 221
                  S     L  ++ + +  +       SF  +   L +L+L+ N       K   
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355

Query: 222 ALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLS 281
             G   +L+ L L  N+L S    +      L+  K+L  + ++ N     +P S     
Sbjct: 356 CKGAWPSLQTLVLSQNHLRS----MQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPE 410

Query: 282 VSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLK----------- 330
             +  + +    I   +   I     L  L +  NNL  S  + L RL+           
Sbjct: 411 -KMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPRLQELYISRNKLKT 465

Query: 331 --------KLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKL 366
                    L  + +  N+ +      F   + L K +L+ N  
Sbjct: 466 LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.4 bits (152), Expect = 7e-11
 Identities = 46/200 (23%), Positives = 77/200 (38%), Gaps = 17/200 (8%)

Query: 5   NLAELEVLVLNNNLLTGTI---PASIFNLSSISTGLDFSNNSLTG-SFPDDMCEGLPRLK 60
           +L  LE L L+ NL+        A      S+ T L  S N L       ++   L  L 
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT-LVLSQNHLRSMQKTGEILLTLKNLT 390

Query: 61  GLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGE 120
            L +S N F  P+P++    +++  ++LS       +   +     L++L +S NN +  
Sbjct: 391 SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVS-NNNLDS 445

Query: 121 IPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPN 180
                  L  L+ L I +N L   +PD       L  + +  N L            L +
Sbjct: 446 FSL---FLPRLQELYISRNKLK-TLPDASL-FPVLLVMKISRNQLKSVPDGI--FDRLTS 498

Query: 181 LEGLILGLNNFSGSIPSFFF 200
           L+ + L  N +  S P   +
Sbjct: 499 LQKIWLHTNPWDCSCPRIDY 518

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  121 bits (306), Expect = 7e-31
 Identities = 64/338 (18%), Positives = 122/338 (36%), Gaps = 20/338 (5%)

Query: 8   ELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYN 67
           +   ++ +       +P     + + +  LD   N +  +   D     P L+ L ++ N
Sbjct: 12  QDRAVLCHRKRFV-AVPE---GIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNEN 66

Query: 68  QFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRD-LGNSTKLKLLYLSFNNLIGEIPQEI- 125
                 P    +   L  + L  N+    IP       + L  L +S  N I  +   + 
Sbjct: 67  IVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDIS-ENKIVILLDYMF 124

Query: 126 GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLI 185
             L NL+ L +  N+LV         +++L+ L+L    L+     +  L  L  L  L 
Sbjct: 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA--LSHLHGLIVLR 182

Query: 186 LGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSE 245
           L   N +      F    +L  LE+++  +   +        NL  L +    LT+    
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242

Query: 246 LMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI-GN 304
                 A+ +   L+ + L+ NP+  +  S +  L   ++EI +    +   +       
Sbjct: 243 ------AVRHLVYLRFLNLSYNPISTIEGSMLHELL-RLQEIQLVGGQLA-VVEPYAFRG 294

Query: 305 LINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKF 342
           L  L  L++  N L+         +  L+ L L +N  
Sbjct: 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (299), Expect = 7e-30
 Identities = 55/316 (17%), Positives = 118/316 (37%), Gaps = 17/316 (5%)

Query: 7   AELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVS 65
            E  +L L  N +  T+    F +   +   L+ + N ++ +        L  L+ L + 
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEE-LELNENIVS-AVEPGAFNNLFNLRTLGLR 88

Query: 66  YNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI 125
            N+ K            L+++ +S N+    +     +   LK L +  +N +  I    
Sbjct: 89  SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG-DNDLVYISHRA 147

Query: 126 -GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGL 184
              L +LE L +++ NL     + + ++  L  L L +  ++  +        L  L+ L
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYS-FKRLYRLKVL 205

Query: 185 ILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTS 244
            +    +  ++         L  L + + + + +   A+  L  L  L L  N +++   
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265

Query: 245 ELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI-G 303
                 S L     L+ I L    +  V P +   L+  +  + +    +   + + +  
Sbjct: 266 ------SMLHELLRLQEIQLVGGQLAVVEPYAFRGLN-YLRVLNVSGNQLT-TLEESVFH 317

Query: 304 NLINLTKLSLGYNNLS 319
           ++ NL  L L  N L+
Sbjct: 318 SVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  116 bits (292), Expect = 6e-29
 Identities = 66/268 (24%), Positives = 102/268 (38%), Gaps = 14/268 (5%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
             NL  L  L L +N L   IP  +F  LS++ T LD S N +     D M + L  LK 
Sbjct: 76  FNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNL-TKLDISENKIV-ILLDYMFQDLYNLKS 132

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L V  N               L +++L     T      L +   L +L L  +  I  I
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR-HLNINAI 191

Query: 122 PQEI-GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPN 180
                  L  L++L I     +  +         L +LS+ +  L+  +P    +  L  
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYL-AVRHLVY 249

Query: 181 LEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLT 240
           L  L L  N  S    S      +L  ++L     + + P A   L  L  L +  N LT
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

Query: 241 SSTSELMSLFSALVNCKSLKVIVLAENP 268
           +      S+F ++    +L+ ++L  NP
Sbjct: 310 TLEE---SVFHSV---GNLETLILDSNP 331

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  116 bits (292), Expect = 6e-29
 Identities = 63/315 (20%), Positives = 118/315 (37%), Gaps = 15/315 (4%)

Query: 73  IPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNL 131
           +P  +    E   + L  N+       +  +   L+ L L+  N++  +      +L NL
Sbjct: 26  VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELN-ENIVSAVEPGAFNNLFNL 82

Query: 132 EILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNF 191
             L +  N L          +S L  L +  N +   L        L NL+ L +G N+ 
Sbjct: 83  RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYM-FQDLYNLKSLEVGDNDL 140

Query: 192 SGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFS 251
                  F   + L  L L   + + +  +AL  L  L  L L+   + +          
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY------ 194

Query: 252 ALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKE-IGNLINLTK 310
           +      LKV+ ++  P    +  +      ++  + +  CN+   +P   + +L+ L  
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLT-AVPYLAVRHLVYLRF 252

Query: 311 LSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSI 370
           L+L YN +S      L  L +LQ + L   +     P+ F   + L    ++ N+L+   
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312

Query: 371 PSCLGDLNSLRILSL 385
            S    + +L  L L
Sbjct: 313 ESVFHSVGNLETLIL 327

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  105 bits (264), Expect = 4e-25
 Identities = 51/238 (21%), Positives = 86/238 (36%), Gaps = 6/238 (2%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
              L+ L  L ++ N +   +   +F +L ++ + L+  +N L          GL  L+ 
Sbjct: 100 FTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKS-LEVGDNDLV-YISHRAFSGLNSLEQ 156

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L +            L H   L  + L                 +LK+L +S    +  +
Sbjct: 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
                   NL  L I   NL       + ++  L+ L+L  N +S  +  S  L  L  L
Sbjct: 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGS-MLHELLRL 274

Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL 239
           + + L     +   P  F   + L  L ++ N  + L       + NLE L L SN L
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (255), Expect = 5e-24
 Identities = 65/304 (21%), Positives = 107/304 (35%), Gaps = 36/304 (11%)

Query: 82  ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNL 141
           +   V     +F   +P  +   T+ +LL L  N +      E  S  +LE L +++N +
Sbjct: 12  QDRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV 68

Query: 142 VGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFN 201
               P    N+  L+TL L +N L   +P      GL NL  L +  N     +   F +
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLK-LIPL-GVFTGLSNLTKLDISENKIVILLDYMFQD 126

Query: 202 ASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKV 261
              L  LE+  N    +  +A   L +LE+L L+   LTS  +E      AL +   L V
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE------ALSHLHGLIV 180

Query: 262 IVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGS 321
           + L    ++ +   S   L                           L  L + +     +
Sbjct: 181 LRLRHLNINAIRDYSFKRLY-------------------------RLKVLEISHWPYLDT 215

Query: 322 LPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLR 381
           +         L  L + +            H   L    L+ N +S    S L +L  L+
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ 275

Query: 382 ILSL 385
            + L
Sbjct: 276 EIQL 279

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (295), Expect = 9e-30
 Identities = 63/367 (17%), Positives = 131/367 (35%), Gaps = 31/367 (8%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
            L        + ++              L++    + F N+++    P  + +   +++ 
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKI-VTFKNSTMR-KLPAALLDSFRQVEL 73

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L ++  Q +        +   + ++ + FN      P    N   L +L L   N +  +
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE-RNDLSSL 132

Query: 122 PQEI-GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPN 180
           P+ I  +   L  L +  NNL     DT    ++L+ L L +N L+ ++  S     +P+
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLS----LIPS 187

Query: 181 LEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLT 240
           L    +  N       S       +  L+ ++NS + +          L  L LQ N LT
Sbjct: 188 LFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLT 239

Query: 241 SSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPK 300
                     + L+N   L  + L+ N ++ ++      +   +E +Y+    +   +  
Sbjct: 240 D--------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNRLV-ALNL 289

Query: 301 EIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFY 360
               +  L  L L +N+L   +     +  +L+ L L +N     +         L    
Sbjct: 290 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS--THHTLKNLT 345

Query: 361 LNRNKLS 367
           L+ N   
Sbjct: 346 LSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  102 bits (257), Expect = 1e-24
 Identities = 57/340 (16%), Positives = 111/340 (32%), Gaps = 26/340 (7%)

Query: 47  SFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTK 106
              D   +       +++                     V+   +         L +  +
Sbjct: 11  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 70

Query: 107 LKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTL 165
           ++LL L+ +  I EI          ++ L +  N +    P    N+  L  L L  N L
Sbjct: 71  VELLNLN-DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 166 SGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQ 225
           S +LP        P L  L +  NN        F   + L  L+L+ N  + +    L  
Sbjct: 130 S-SLPRG-IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSL 184

Query: 226 LRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVE 285
           + +L    +  N L++           L    +++ +  + N ++ V       L     
Sbjct: 185 IPSLFHANVSYNLLST-----------LAIPIAVEELDASHNSINVVRGPVNVEL----T 229

Query: 286 EIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGP 345
            + +   N+       + N   L ++ L YN L   +     ++++L+ L + NN+    
Sbjct: 230 ILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA- 286

Query: 346 IPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           +         L    L+ N L   +       + L  L L
Sbjct: 287 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  114 bits (287), Expect = 3e-29
 Identities = 63/306 (20%), Positives = 112/306 (36%), Gaps = 25/306 (8%)

Query: 56  LPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN 115
             R K   V+ +  K  + +       +  + LS N  +     DL   TKL+LL LS +
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS-S 67

Query: 116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKL 175
           N++ E   ++ SL  L  L ++ N +       +    +++TL   NN +S  +  S+  
Sbjct: 68  NVLYETL-DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR-- 118

Query: 176 IGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGL-IPKALGQLRNLERLGL 234
                 + + L  N  +          S++ YL+L  N    +   +       LE L L
Sbjct: 119 --GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 235 QSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNI 294
           Q N++              V    LK + L+ N +   +     + +  V  I +    +
Sbjct: 177 QYNFIYD--------VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAA-GVTWISLRNNKL 226

Query: 295 HGRIPKEIGNLINLTKLSLGYNNLS-GSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHF 353
              I K +    NL    L  N    G+L     + +++Q +  Q  K       E C  
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 354 SRLYKF 359
             L  +
Sbjct: 286 PTLGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (265), Expect = 4e-26
 Identities = 46/319 (14%), Positives = 103/319 (32%), Gaps = 26/319 (8%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV 64
           N    ++  + ++ L   + +   +  ++   LD S N L+            +L+ L +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKE-LDLSGNPLS-QISAADLAPFTKLELLNL 65

Query: 65  SYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQE 124
           S N     +   L     L  + L+ N        +L     ++ L+ + NN I  +   
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN-ISRVSCS 117

Query: 125 IGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGL 184
               +  + + +  N +           S ++ L L  N +   +  ++       LE L
Sbjct: 118 R--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHL 174

Query: 185 ILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTS 244
            L  N     +       +KL  L+L+ N  +  +         +  + L++N L     
Sbjct: 175 NLQYNFIY-DVKGQVVF-AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV---- 227

Query: 245 ELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGN 304
               +  AL   ++L+   L  N        ++ +     + +         ++  +   
Sbjct: 228 ---LIEKALRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

Query: 305 LINLTKLSLGYNNLSGSLP 323
              +  L          LP
Sbjct: 282 ECTVPTLGHYGAYCCEDLP 300

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  104 bits (261), Expect = 1e-25
 Identities = 49/290 (16%), Positives = 99/290 (34%), Gaps = 23/290 (7%)

Query: 97  IPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLK 156
           I     N  + K+  ++ ++L   +     S  N++ L +  N L       +   + L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 157 TLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFS 216
            L+L +N L         L  L  L  L L  N     +         +  L  A N+ S
Sbjct: 62  LLNLSSNVLY-ETLD---LESLSTLRTLDLNNNYVQ-ELL----VGPSIETLHAANNNIS 112

Query: 217 GLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSS 276
            +      + +  + + L +N +T                  ++ + L  N +D V  + 
Sbjct: 113 RVSC---SRGQGKKNIYLANNKITMLRDL------DEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 277 IGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLD 336
           +   S ++E + +    I+  +  ++     L  L L  N L+  +         +  + 
Sbjct: 164 LAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220

Query: 337 LQNNKFEGPIPHEFCHFSRLYKFYLNRNKLS-GSIPSCLGDLNSLRILSL 385
           L+NNK    I         L  F L  N    G++         ++ ++ 
Sbjct: 221 LRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 99.7 bits (249), Expect = 7e-24
 Identities = 51/258 (19%), Positives = 100/258 (38%), Gaps = 21/258 (8%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
             +   ++ L L+ N L+    A +   + +   L+ S+N L  +      E L  L+ L
Sbjct: 30  RQSAWNVKELDLSGNPLSQISAADLAPFTKLEL-LNLSSNVLYETLD---LESLSTLRTL 85

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
            ++ N  +      L     +  +  + N  + R+    G     K +YL+ N +     
Sbjct: 86  DLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSRGQG--KKNIYLANNKITMLRD 137

Query: 123 QEIGSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
            + G    ++ L +  N +       +  +  TL+ L+L  N +  ++      +    L
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG---QVVFAKL 193

Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241
           + L L  N  +  +   F +A+ + ++ L  N     I KAL   +NLE   L+ N    
Sbjct: 194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251

Query: 242 STSELMSLFSALVNCKSL 259
            T  L   FS     +++
Sbjct: 252 GT--LRDFFSKNQRVQTV 267

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.0 bits (203), Expect = 1e-17
 Identities = 47/250 (18%), Positives = 90/250 (36%), Gaps = 21/250 (8%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           +L +L+ L  L LNNN +       +    SI T L  +NN+++              K 
Sbjct: 75  DLESLSTLRTLDLNNNYVQ-----ELLVGPSIET-LHAANNNIS-RVSCSR---GQGKKN 124

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTG-RIPRDLGNSTKLKLLYLSFNNLIGE 120
           +Y++ N+       +      +  + L  N+           +S  L+ L L +N +  +
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D 183

Query: 121 IPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPN 180
           +  ++     L+ L +  N L  F+     + + +  +SL NN L   +  +  L    N
Sbjct: 184 VKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA--LRFSQN 238

Query: 181 LEGLILGLNNFS-GSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL 239
           LE   L  N F  G++  FF    ++  +          +     +   +  LG    Y 
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYC 295

Query: 240 TSSTSELMSL 249
                   + 
Sbjct: 296 CEDLPAPFAD 305

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 31/193 (16%), Positives = 73/193 (37%), Gaps = 18/193 (9%)

Query: 194 SIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSAL 253
           +I     N ++    ++  +S    +        N++ L L  N L+  ++        L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA------DL 54

Query: 254 VNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSL 313
                L+++ L+ N +       + +LS ++  + +    +     +E+    ++  L  
Sbjct: 55  APFTKLELLNLSSNVLYET--LDLESLS-TLRTLDLNNNYV-----QELLVGPSIETLHA 106

Query: 314 GYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSG-SIPS 372
             NN+S    ++  R +  + + L NNK       +    SR+    L  N++   +   
Sbjct: 107 ANNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 373 CLGDLNSLRILSL 385
                ++L  L+L
Sbjct: 164 LAASSDTLEHLNL 176

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  115 bits (290), Expect = 1e-28
 Identities = 54/387 (13%), Positives = 119/387 (30%), Gaps = 31/387 (8%)

Query: 4   GNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLY 63
            N    ++  + ++ L   + +   +  ++   LD S N L+            +L+ L 
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKE-LDLSGNPLS-QISAADLAPFTKLELLN 64

Query: 64  VSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQ 123
           +S N     +   L     L  + L+ N        +L     ++ L+ + NN I  +  
Sbjct: 65  LSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN-ISRVS- 115

Query: 124 EIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEG 183
                +  + + +  N +           S ++ L L  N +   +  ++       LE 
Sbjct: 116 -CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEH 173

Query: 184 LILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSST 243
           L L  N     +       +KL  L+L+ N  +  +         +  + L++N L    
Sbjct: 174 LNLQYNFIY-DVKGQVVF-AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV--- 227

Query: 244 SELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIG 303
                +  AL   ++L+   L  N           + +  V+ +         ++  +  
Sbjct: 228 ----LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA---KQTVKKLTGQNE 280

Query: 304 -NLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEG----PIPHEFCHFSRLYK 358
                 T    G             RL  L+  +      +G     +  E  + +R  +
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340

Query: 359 FYLNRNKLSGSIPSCLGDLNSLRILSL 385
               + +    I        +   L  
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQ 367

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  111 bits (279), Expect = 4e-27
 Identities = 65/337 (19%), Positives = 116/337 (34%), Gaps = 27/337 (8%)

Query: 51  DMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLL 110
           ++ +   R K   V+ +  K  + +       +  + LS N  +     DL   TKL+LL
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 111 YLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLP 170
            LS N L      ++ SL  L  L ++ N +       +    +++TL   NN +S  + 
Sbjct: 64  NLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS 115

Query: 171 SSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKAL-GQLRNL 229
            S+        + + L  N  +          S++ YL+L  N    +    L      L
Sbjct: 116 CSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 230 ERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYM 289
           E L LQ N++              V    LK + L+ N +   +     + +  V  I +
Sbjct: 172 EHLNLQYNFIYD--------VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAA-GVTWISL 221

Query: 290 YKCNIHGRIPKEIGNLINLTKLSLGYNNLS-GSLPITLGRLKKLQGLDLQNNKFEGPIPH 348
               +   I K +    NL    L  N    G+L     + +++Q +  Q  K       
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 349 EFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           E C  +     +                L +L+    
Sbjct: 281 EEC--TVPTLGHYGAYCCEDLPAPFADRLIALKRKEH 315

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  108 bits (272), Expect = 3e-26
 Identities = 61/388 (15%), Positives = 123/388 (31%), Gaps = 31/388 (7%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
             +   ++ L L+ N L+    A +   + +   L+ S+N L  +      E L  L+ L
Sbjct: 30  RQSAWNVKELDLSGNPLSQISAADLAPFTKLEL-LNLSSNVLYETLD---LESLSTLRTL 85

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
            ++ N  +      L     +  +  + N  + R+    G     K +YL+ N +     
Sbjct: 86  DLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSRGQG--KKNIYLANNKITMLRD 137

Query: 123 QEIGSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
            + G    ++ L +  N +       +  +  TL+ L+L  N +  ++      +    L
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ---VVFAKL 193

Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241
           + L L  N  +  +   F +A+ + ++ L  N     I KAL   +NLE   L+ N    
Sbjct: 194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF-- 249

Query: 242 STSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKE 301
               L   FS     +++    + +      L              +             
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTVKK------LTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

Query: 302 IGNLINLTKLSLGYNNLSGS----LPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLY 357
              LI L +      +  GS    L        + + +D    ++   I           
Sbjct: 304 ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKI 363

Query: 358 KFYLNRNKLSGSIPSCLGDLNSLRILSL 385
                +  L   + +       L     
Sbjct: 364 TLEQKKKALDEQVSNGRRAHAELDGTLQ 391

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  101 bits (254), Expect = 7e-24
 Identities = 50/290 (17%), Positives = 100/290 (34%), Gaps = 23/290 (7%)

Query: 97  IPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLK 156
           I     N  + K+  ++ ++L   +     S  N++ L +  N L       +   + L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 157 TLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFS 216
            L+L +N L   L     L  L  L  L L  N     +         +  L  A N+ S
Sbjct: 62  LLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQ-ELL----VGPSIETLHAANNNIS 112

Query: 217 GLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSS 276
            +      + +  + + L +N +T                  ++ + L  N +D V  + 
Sbjct: 113 RVSC---SRGQGKKNIYLANNKITMLRDL------DEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 277 IGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLD 336
           +   S ++E + +    I+  +  ++     L  L L  N L+  +         +  + 
Sbjct: 164 LAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220

Query: 337 LQNNKFEGPIPHEFCHFSRLYKFYLNRNKLS-GSIPSCLGDLNSLRILSL 385
           L+NNK    I         L  F L  N    G++         ++ ++ 
Sbjct: 221 LRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 98.0 bits (244), Expect = 1e-22
 Identities = 56/385 (14%), Positives = 122/385 (31%), Gaps = 24/385 (6%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           +L    +LE+L L++N+L       + +LS++ T LD +NN +            P ++ 
Sbjct: 53  DLAPFTKLELLNLSSNVLYE--TLDLESLSTLRT-LDLNNNYVQ-ELL-----VGPSIET 103

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIG-E 120
           L+ + N       +     K +    L+ N+ T     D G  ++++ L L  N +    
Sbjct: 104 LHAANNNISRVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 121 IPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPN 180
             +   S   LE L +  N +   +   +   + LKTL L +N L+  +           
Sbjct: 161 FAELAASSDTLEHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKLA-FMGPE--FQSAAG 215

Query: 181 LEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLT 240
           +  + L  N     I      +  L + +L  N F     +     +N     +    + 
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVK 273

Query: 241 SSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPK 300
             T +     +                 +       +  L      +   + +   R+  
Sbjct: 274 KLTGQNEEECTVP---TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 301 EIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFY 360
           E  N     ++          +     R +    L+ +    +  + +     + L    
Sbjct: 331 ERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTL 390

Query: 361 LNRNKLSGSIPSCLGDLNSLRILSL 385
                    +     + + L++L  
Sbjct: 391 QQAVGQ-IELQHATEEQSPLQLLRA 414

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 74.1 bits (182), Expect = 1e-14
 Identities = 31/193 (16%), Positives = 73/193 (37%), Gaps = 18/193 (9%)

Query: 194 SIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSAL 253
           +I     N ++    ++  +S    +        N++ L L  N L+  ++        L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA------DL 54

Query: 254 VNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSL 313
                L+++ L+ N +       + +LS ++  + +    +     +E+    ++  L  
Sbjct: 55  APFTKLELLNLSSNVLYET--LDLESLS-TLRTLDLNNNYV-----QELLVGPSIETLHA 106

Query: 314 GYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSG-SIPS 372
             NN+S    ++  R +  + + L NNK       +    SR+    L  N++   +   
Sbjct: 107 ANNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 373 CLGDLNSLRILSL 385
                ++L  L+L
Sbjct: 164 LAASSDTLEHLNL 176

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.1 bits (143), Expect = 9e-10
 Identities = 29/245 (11%), Positives = 58/245 (23%), Gaps = 12/245 (4%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           E  + A +  + L NN L   I  ++    ++    D   N        D      R+  
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH-FDLRGNGFHCGTLRDFFSKNQRV-- 264

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSF----NNL 117
             V+    K     N   C   +                      LK    +      + 
Sbjct: 265 QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE 324

Query: 118 IGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIG 177
              +  E  +      +   +      I           TL      L   + + ++   
Sbjct: 325 TERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA-- 382

Query: 178 LPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFS-GLIPKALGQLRNLERLGLQS 236
              L+G +         +       S L  L      +    + +   Q   +    +  
Sbjct: 383 HAELDGTLQQAVG-QIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQ 441

Query: 237 NYLTS 241
           +  T 
Sbjct: 442 HKETQ 446

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  113 bits (285), Expect = 8e-28
 Identities = 63/367 (17%), Positives = 131/367 (35%), Gaps = 31/367 (8%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
            L        + ++              L++    + F N+++    P  + +   +++ 
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKI-VTFKNSTMR-KLPAALLDSFRQVEL 79

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L ++  Q +        +   + ++ + FN      P    N   L +L L   N +  +
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE-RNDLSSL 138

Query: 122 PQEI-GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPN 180
           P+ I  +   L  L +  NNL     DT    ++L+ L L +N L+ ++  S     +P+
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLS----LIPS 193

Query: 181 LEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLT 240
           L    +  N       S       +  L+ ++NS + +          L  L LQ N LT
Sbjct: 194 LFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLT 245

Query: 241 SSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPK 300
                     + L+N   L  + L+ N ++ ++      +   +E +Y+    +   +  
Sbjct: 246 D--------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNRLV-ALNL 295

Query: 301 EIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFY 360
               +  L  L L +N+L   +     +  +L+ L L +N     +         L    
Sbjct: 296 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLT 351

Query: 361 LNRNKLS 367
           L+ N   
Sbjct: 352 LSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  100 bits (250), Expect = 3e-23
 Identities = 57/340 (16%), Positives = 111/340 (32%), Gaps = 26/340 (7%)

Query: 47  SFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTK 106
              D   +       +++                     V+   +         L +  +
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 76

Query: 107 LKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTL 165
           ++LL L+ +  I EI          ++ L +  N +    P    N+  L  L L  N L
Sbjct: 77  VELLNLN-DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 166 SGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQ 225
           S +LP        P L  L +  NN        F   + L  L+L+ N  + +    L  
Sbjct: 136 S-SLPRG-IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSL 190

Query: 226 LRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVE 285
           + +L    +  N L++           L    +++ +  + N ++ V       L     
Sbjct: 191 IPSLFHANVSYNLLST-----------LAIPIAVEELDASHNSINVVRGPVNVEL----T 235

Query: 286 EIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGP 345
            + +   N+       + N   L ++ L YN L   +     ++++L+ L + NN+    
Sbjct: 236 ILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA- 292

Query: 346 IPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           +         L    L+ N L   +       + L  L L
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (280), Expect = 5e-27
 Identities = 75/376 (19%), Positives = 129/376 (34%), Gaps = 59/376 (15%)

Query: 9   LEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYN 67
             VL +  + LT T+P  +  ++    T L   +N+LT S P       P L+ L VS N
Sbjct: 42  NAVLNVGESGLT-TLPDCLPAHI----TTLVIPDNNLT-SLP----ALPPELRTLEVSGN 91

Query: 68  QFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGS 127
           Q    +P       ELS  S                 + L  L++   N +  +P     
Sbjct: 92  QLTS-LPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIF-GNQLTSLPVLPPG 142

Query: 128 LRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILG 187
           L+ L +     +N +  +P        L  L   NN L+ +LP          L+ L + 
Sbjct: 143 LQELSVS----DNQLASLPALPSE---LCKLWAYNNQLT-SLPML-----PSGLQELSVS 189

Query: 188 LNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELM 247
            N  + S+P+      KL+       S   L          L+ L +  N LTS      
Sbjct: 190 DNQLA-SLPTLPSELYKLWAYNNRLTSLPALPS-------GLKELIVSGNRLTSLPVLP- 240

Query: 248 SLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLIN 307
                      LK ++++ N +   LP     L      + +Y+  +  R+P+ + +L +
Sbjct: 241 ---------SELKELMVSGNRLTS-LPMLPSGL----LSLSVYRNQLT-RLPESLIHLSS 285

Query: 308 LTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLS 367
            T ++L  N LS      L  +    G      +F+            L+      + L 
Sbjct: 286 ETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH--LAAADWLV 343

Query: 368 GSIPSCLGDLNSLRIL 383
            +        +   + 
Sbjct: 344 PAREGEPAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (259), Expect = 3e-24
 Identities = 64/308 (20%), Positives = 112/308 (36%), Gaps = 53/308 (17%)

Query: 78  WHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRID 137
                 + +++  +  T  +P  L     +  L +  NNL   +P     LR LE+    
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALPPELRTLEV---- 88

Query: 138 QNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPS 197
             N +  +P     +  L   S     L   LPS         L  L +  N  + S+P 
Sbjct: 89  SGNQLTSLPVLPPGLLELSIFSNPLTHLP-ALPS--------GLCKLWIFGNQLT-SLPV 138

Query: 198 FFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCK 257
                  L  L ++ N  + L P    +L  L      +N LTS                
Sbjct: 139 LPPG---LQELSVSDNQLASL-PALPSELCKLW---AYNNQLTSLPMLP----------S 181

Query: 258 SLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNN 317
            L+ + +++N +   LP+    L     +++ Y   +   +P     L    +L +  N 
Sbjct: 182 GLQELSVSDNQL-ASLPTLPSEL----YKLWAYNNRLT-SLPALPSGL---KELIVSGNR 232

Query: 318 LSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDL 377
           L+ SLP+    LK+L    +  N+    +P        L    + RN+L+  +P  L  L
Sbjct: 233 LT-SLPVLPSELKEL---MVSGNRLTS-LPMLPSGLLSLS---VYRNQLT-RLPESLIHL 283

Query: 378 NSLRILSL 385
           +S   ++L
Sbjct: 284 SSETTVNL 291

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 29/158 (18%), Positives = 48/158 (30%), Gaps = 16/158 (10%)

Query: 6   LAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVS 65
            + L+ L+++ N LT ++P     L      L  S N LT S P         L  L V 
Sbjct: 220 PSGLKELIVSGNRLT-SLPVLPSELKE----LMVSGNRLT-SLP----MLPSGLLSLSVY 269

Query: 66  YNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI 125
            NQ    +P +L H    + V+L  N  + R  +      ++         +I       
Sbjct: 270 RNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQ---ALREITSAPGYSGPII-RFDMAG 324

Query: 126 GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNN 163
            S                 +P      +      +   
Sbjct: 325 ASAPRETRALHLAAAD-WLVPAREGEPAPADRWHMFGQ 361

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  104 bits (261), Expect = 1e-25
 Identities = 64/262 (24%), Positives = 107/262 (40%), Gaps = 19/262 (7%)

Query: 12  LVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQ--F 69
           +  N+  LT ++P  I    S +T L+  +N L  S P  + + L +L  L +S N   F
Sbjct: 12  IRCNSKGLT-SVPTGIP---SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 70  KGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQE--IGS 127
           KG    + +    L  + LSFN     +  +     +L+ L    +N + ++ +     S
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLS 124

Query: 128 LRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLIL 186
           LRNL  L I   +      + IF  +S+L+ L +  N+   N         L NL  L L
Sbjct: 125 LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDL 182

Query: 187 GLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSEL 246
                    P+ F + S L  L +++N+F  L       L +L+ L    N++ +S    
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK-- 240

Query: 247 MSLFSALVNCKSLKVIVLAENP 268
                      SL  + L +N 
Sbjct: 241 -QELQHFP--SSLAFLNLTQND 259

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.9 bits (234), Expect = 7e-22
 Identities = 53/261 (20%), Positives = 96/261 (36%), Gaps = 14/261 (5%)

Query: 110 LYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNL 169
           +  +   L   +P  I    +   L ++ N L          ++ L  LSL +N LS   
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 170 PSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPK-ALGQLRN 228
             S+   G  +L+ L L  N    ++ S F    +L +L+  +++   +        LRN
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 229 LERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIY 288
           L  L +   +   + +             SL+V+ +A N         I     ++  + 
Sbjct: 128 LIYLDISHTHTRVAFNG------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 289 MYKCNIHGRIPKEI-GNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIP 347
           + +C +  ++      +L +L  L++ +NN           L  LQ LD   N       
Sbjct: 182 LSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240

Query: 348 HEFCHF-SRLYKFYLNRNKLS 367
            E  HF S L    L +N  +
Sbjct: 241 QELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.5 bits (233), Expect = 9e-22
 Identities = 54/261 (20%), Positives = 99/261 (37%), Gaps = 17/261 (6%)

Query: 34  STGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQF 93
            T +  ++  LT S P  +         L +  N+ +           +L+++SLS N  
Sbjct: 9   GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 94  TGR--IPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIF- 150
           + +    +    +T LK L LSFN +I  +      L  LE L    +NL      ++F 
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 151 NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPS-FFFNASKLYYLE 209
           ++  L  L + +        +     GL +LE L +  N+F  +     F     L +L+
Sbjct: 124 SLRNLIYLDISHTHTR-VAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 210 LAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPV 269
           L+      L P A   L +L+ L +  N   S  +             SL+V+  + N +
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT------FPYKCLNSLQVLDYSLNHI 235

Query: 270 DGVLPSSIGNLSVSVEEIYMY 290
                  + +   S+  + + 
Sbjct: 236 MTSKKQELQHFPSSLAFLNLT 256

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.9 bits (208), Expect = 2e-18
 Identities = 54/265 (20%), Positives = 89/265 (33%), Gaps = 37/265 (13%)

Query: 82  ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNL--IGEIPQEIGSLRNLEILRIDQN 139
             +R+ L  N+            T+L  L LS N L   G   Q      +L+ L +  N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 140 NLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFF 199
            ++  +      +  L+ L   ++ L   +      + L NL  L +   +   +    F
Sbjct: 89  GVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 200 FNASKLYYLELAYNSF-SGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKS 258
              S L  L++A NSF    +P    +LRNL  L L    L   +        A  +  S
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT------AFNSLSS 200

Query: 259 LKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNL 318
           L+V+ ++ N    +       L+                         +L  L    N++
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLN-------------------------SLQVLDYSLNHI 235

Query: 319 SGSLPITLGRL-KKLQGLDLQNNKF 342
             S    L      L  L+L  N F
Sbjct: 236 MTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.5 bits (207), Expect = 3e-18
 Identities = 44/239 (18%), Positives = 76/239 (31%), Gaps = 32/239 (13%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
              L +L  L L++N L+                                  G   LK L
Sbjct: 48  FDKLTQLTKLSLSSNGLS------------------------FKGCCSQSDFGTTSLKYL 83

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDL-GNSTKLKLLYLSFNNLIGEI 121
            +S+N     + +N    ++L  +    +         +  +   L  L +S  +     
Sbjct: 84  DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVA 141

Query: 122 PQEI-GSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLP 179
              I   L +LE+L++  N+        IF  +  L  L L    L   L  +     L 
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPT-AFNSLS 199

Query: 180 NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQL-RNLERLGLQSN 237
           +L+ L +  NNF       +   + L  L+ + N       + L     +L  L L  N
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.9 bits (195), Expect = 1e-16
 Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 6/190 (3%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV 64
               L+ L L+ N +  T+ ++   L  +   LDF +++L       +   L  L  L +
Sbjct: 76  GTTSLKYLDLSFNGVI-TMSSNFLGLEQL-EHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133

Query: 65  SYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRD-LGNSTKLKLLYLSFNNLIGEIPQ 123
           S+   +            L  + ++ N F      D       L  L LS    + ++  
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP 192

Query: 124 EI-GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLE 182
               SL +L++L +  NN           +++L+ L    N +       +      +L 
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLA 251

Query: 183 GLILGLNNFS 192
            L L  N+F+
Sbjct: 252 FLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 26/118 (22%), Positives = 39/118 (33%), Gaps = 6/118 (5%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
              L+ LEVL +  N         IF  L +++  LD S   L           L  L+ 
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF-LDLSQCQLE-QLSPTAFNSLSSLQV 203

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDL--GNSTKLKLLYLSFNNL 117
           L +S+N F             L  +  S N       +       + L  L L+ N+ 
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  105 bits (265), Expect = 2e-25
 Identities = 69/368 (18%), Positives = 123/368 (33%), Gaps = 42/368 (11%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLY 63
            L +L+ L +        I  + F  LSS+   L    N            GL  L+ L 
Sbjct: 52  RLQDLQFLKVEQQTPGLVIRNNTFRGLSSL-IILKLDYNQFL-QLETGAFNGLANLEVLT 109

Query: 64  VSYNQFKG-PIPNNLWHC-KELSRVSLSFNQFTGRIPRDL-GNSTKLKLLYLSFNNLIGE 120
           ++     G  +  N +     L  + L  N      P     N  +  +L L+FN  +  
Sbjct: 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKS 168

Query: 121 IPQEI-----------GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNL 169
           I +E              L ++ +  +++  L        F  +++ TL L  N      
Sbjct: 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK-ES 227

Query: 170 PSSKKLIGLPNLEGLILGLNNFSGSIPSFFFN--------------ASKLYYLELAYNSF 215
            + +    +   +   L L+N      SF                 AS +   +L+ +  
Sbjct: 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI 287

Query: 216 SGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS 275
             L+        +LE+L L  N +           +A      L  + L++N +  +   
Sbjct: 288 FALLKSVFSHFTDLEQLTLAQNEINKIDD------NAFWGLTHLLKLNLSQNFLGSIDSR 341

Query: 276 SIGNLSVSVEEIYMYKCNIHGRIPKEI-GNLINLTKLSLGYNNLSGSLPITLGRLKKLQG 334
              NL   +E + +   +I   +  +    L NL +L+L  N L         RL  LQ 
Sbjct: 342 MFENL-DKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399

Query: 335 LDLQNNKF 342
           + L  N +
Sbjct: 400 IWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  103 bits (258), Expect = 2e-24
 Identities = 77/382 (20%), Positives = 146/382 (38%), Gaps = 30/382 (7%)

Query: 7   AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSY 66
           A +  + L+ N +   +  + F+       L     +      ++   GL  L  L + Y
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 67  NQFKGPIPNNLWHCKELSRVSLSFNQFTG-RIPRDL-GNSTKLKLLYLSFNNLIGEIPQE 124
           NQF             L  ++L+     G  +  +     T L++L L  NN+    P  
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 125 I-GSLRNLEILRIDQNNLVGFIPDTIFNM---STLKTLSLLNNTLS------GNLPSSKK 174
              ++R   +L +  N +   I +             L L + TL               
Sbjct: 149 FFLNMRRFHVLDLTFNKVKS-ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 175 LIGLPNLEGLILGLNNFSGSIPSFFFNA---SKLYYLEL--AYNSFSGLIPKALGQLRNL 229
                ++  L L  N F  S+   FF+A   +K+  L L  +YN  S           N 
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 230 ERLGLQSNYLTS---STSELMSLFS-ALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVE 285
              GL+++ + +   S S++ +L      +   L+ + LA+N ++ +  ++   L+  + 
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLL 326

Query: 286 EIYMYKCNIHGRIPKEI-GNLINLTKLSLGYNNLSGSLPI-TLGRLKKLQGLDLQNNKFE 343
           ++ + +  + G I   +  NL  L  L L YN++  +L   +   L  L+ L L  N+ +
Sbjct: 327 KLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK 384

Query: 344 GPIPHE-FCHFSRLYKFYLNRN 364
             +P   F   + L K +L+ N
Sbjct: 385 S-VPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.8 bits (249), Expect = 3e-23
 Identities = 62/320 (19%), Positives = 106/320 (33%), Gaps = 24/320 (7%)

Query: 88  LSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLVGFIP 146
           LS N               L+ L +        I       L +L IL++D N  +  + 
Sbjct: 37  LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLE 95

Query: 147 DTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIP-SFFFNASK 204
              F  ++ L+ L+L    L G + S      L +LE L+L  NN     P SFF N  +
Sbjct: 96  TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155

Query: 205 LYYLELAYNSFSGLIPKALGQL--RNLERLGLQSNYLTSSTSELMSL--FSALVNCKSLK 260
            + L+L +N    +  + L     ++   L L S  L       +            S+ 
Sbjct: 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT 215

Query: 261 VIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLI-------------- 306
            + L+ N     +     +     +   +   N +                         
Sbjct: 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS 275

Query: 307 NLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKL 366
            +    L  + +   L         L+ L L  N+      + F   + L K  L++N L
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335

Query: 367 SGSIPSCLGD-LNSLRILSL 385
             SI S + + L+ L +L L
Sbjct: 336 G-SIDSRMFENLDKLEVLDL 354

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 81.3 bits (201), Expect = 5e-17
 Identities = 68/294 (23%), Positives = 113/294 (38%), Gaps = 40/294 (13%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLP--RLKG 61
            L  LE+LVL +N +    PAS F N+      LD + N +  S  ++            
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV-LDLTFNKVK-SICEEDLLNFQGKHFTL 184

Query: 62  LYVSYNQ--------FKGPIPNNLWHCKELSRVSLSFNQFTGRIPR---DLGNSTKLKLL 110
           L +S                  N +    ++ + LS N F   + +   D    TK++ L
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244

Query: 111 YLSFN---------NLIGEIPQEI---GSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKT 157
            LS +             +             ++   + ++ +   +  ++F + + L+ 
Sbjct: 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI-FALLKSVFSHFTDLEQ 303

Query: 158 LSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNA-SKLYYLELAYNSFS 216
           L+L  N ++  +  +    GL +L  L L  N    SI S  F    KL  L+L+YN   
Sbjct: 304 LTLAQNEIN-KIDDNA-FWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR 360

Query: 217 GLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVD 270
            L  ++   L NL+ L L +N L S       +F  L    SL+ I L  NP D
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKSVPDG---IFDRL---TSLQKIWLHTNPWD 408

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  103 bits (258), Expect = 5e-25
 Identities = 63/313 (20%), Positives = 119/313 (38%), Gaps = 26/313 (8%)

Query: 37  LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR 96
           +  S+  L    P D+    P    L +  N+       +  + K L  + L  N+ +  
Sbjct: 36  VQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91

Query: 97  IPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLK 156
            P       KL+ LYLS  N + E+P+     + L+ LR+ +N +          ++ + 
Sbjct: 92  SPGAFAPLVKLERLYLS-KNQLKELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMI 148

Query: 157 TLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFS 216
            + L  N L  +   +    G+  L  + +   N + +IP        L  L L  N  +
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT 205

Query: 217 GLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSS 276
            +   +L  L NL +LGL  N +++  +       +L N   L+ + L  N +   +P  
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNSISAVDNG------SLANTPHLRELHLNNNKLV-KVPGG 258

Query: 277 IGNLSVSVEEIYMYKCNIHG------RIPKEIGNLINLTKLSLGYNNLSGSL--PITLGR 328
           + +    ++ +Y++  NI          P       + + +SL  N +      P T   
Sbjct: 259 LADHK-YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317

Query: 329 LKKLQGLDLQNNK 341
           +     + L N K
Sbjct: 318 VYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 94.7 bits (236), Expect = 5e-22
 Identities = 53/245 (21%), Positives = 89/245 (36%), Gaps = 25/245 (10%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLY 63
            L +LE L L+ N L   +P  +   L      L    N +T      +  GL ++  + 
Sbjct: 98  PLVKLERLYLSKNQLK-ELPEKMPKTLQE----LRVHENEIT-KVRKSVFNGLNQMIVVE 151

Query: 64  VSYNQFK-GPIPNN-LWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           +  N  K   I N      K+LS + ++    T  IP+ L     L  L+L   N I ++
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLD-GNKITKV 207

Query: 122 PQEI-GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPN 180
                  L NL  L +  N++      ++ N   L+ L L NN L   +P    L     
Sbjct: 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG--LADHKY 264

Query: 181 LEGLILGLNNFSG------SIPSFFFNASKLYYLELAYN--SFSGLIPKALGQLRNLERL 232
           ++ + L  NN S         P +    +    + L  N   +  + P     +     +
Sbjct: 265 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324

Query: 233 GLQSN 237
            L + 
Sbjct: 325 QLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.4 bits (225), Expect = 1e-20
 Identities = 64/286 (22%), Positives = 107/286 (37%), Gaps = 25/286 (8%)

Query: 107 LKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLS 166
           L+++  S   L  ++P+++    +  +L +  N +         N+  L TL L+NN +S
Sbjct: 33  LRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 167 GNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQL 226
              P +     L  LE L L  N     +P        L  L +  N  + +       L
Sbjct: 90  KISPGA--FAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGL 144

Query: 227 RNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEE 286
             +  + L +N L SS  E      A    K L  I +A+  +  +      +L     E
Sbjct: 145 NQMIVVELGTNPLKSSGIEN----GAFQGMKKLSYIRIADTNITTIPQGLPPSL----TE 196

Query: 287 IYMYKCNIHGRIPKEI-GNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGP 345
           +++    I  ++       L NL KL L +N++S     +L     L+ L L NNK    
Sbjct: 197 LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK- 254

Query: 346 IPHEFCHFSRLYKFYLNRNKLSG------SIPSCLGDLNSLRILSL 385
           +P        +   YL+ N +S         P       S   +SL
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 21/140 (15%), Positives = 40/140 (28%), Gaps = 25/140 (17%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           L  L  L  L L+ N ++  +      N   +   L  +NN L    P  +      ++ 
Sbjct: 212 LKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRE-LHLNNNKLV-KVPGGL-ADHKYIQV 267

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNL-IGE 120
           +Y+  N                   ++  N F    P           + L  N +   E
Sbjct: 268 VYLHNNNIS----------------AIGSNDFCP--PGYNTKKASYSGVSLFSNPVQYWE 309

Query: 121 IPQEI-GSLRNLEILRIDQN 139
           I       +     +++   
Sbjct: 310 IQPSTFRCVYVRAAVQLGNY 329

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  103 bits (259), Expect = 1e-24
 Identities = 65/263 (24%), Positives = 111/263 (42%), Gaps = 21/263 (7%)

Query: 82  ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNN 140
           + S+V  +    +  +P+ +   +  + L L  NN I  I  +    L +LE+L++ +N+
Sbjct: 55  QFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNS 110

Query: 141 LVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFF 199
           +   I    F  +++L TL L +N L+  +PS      L  L  L L  N    SIPS+ 
Sbjct: 111 I-RQIEVGAFNGLASLNTLELFDNWLT-VIPSGA-FEYLSKLRELWLRNNPIE-SIPSYA 166

Query: 200 FNA-SKLYYLELA-YNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCK 257
           FN    L  L+L        +   A   L NL+ L L    +             L    
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--------MPNLTPLV 218

Query: 258 SLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNN 317
            L+ + ++ N    + P S   LS S++++++    +          L +L +L+L +NN
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLS-SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277

Query: 318 LSGSLPITLGRLKKLQGLDLQNN 340
           LS         L+ L  L L +N
Sbjct: 278 LSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.3 bits (227), Expect = 2e-20
 Identities = 51/234 (21%), Positives = 78/234 (33%), Gaps = 11/234 (4%)

Query: 7   AELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVS 65
           +    L L  N +   I A  F +L  +   L    NS+          GL  L  L + 
Sbjct: 75  SNTRYLNLMENNIQ-MIQADTFRHLHHLEV-LQLGRNSIR-QIEVGAFNGLASLNTLELF 131

Query: 66  YNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRD-LGNSTKLKLLYLSFNNLIGEIPQE 124
            N           +  +L  + L  N     IP         L  L L     +  I + 
Sbjct: 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEG 190

Query: 125 I-GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEG 183
               L NL+ L +   N+       +  +  L+ L +  N     +       GL +L+ 
Sbjct: 191 AFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFP-EIRPGS-FHGLSSLKK 246

Query: 184 LILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSN 237
           L +  +  S    + F   + L  L LA+N+ S L       LR L  L L  N
Sbjct: 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 90.6 bits (225), Expect = 4e-20
 Identities = 56/243 (23%), Positives = 95/243 (39%), Gaps = 14/243 (5%)

Query: 144 FIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNAS 203
            +P  I   S  + L+L+ N +   + +      L +LE L LG N+        F   +
Sbjct: 68  EVPQGIP--SNTRYLNLMENNIQ-MIQADT-FRHLHHLEVLQLGRNSIRQIEVGAFNGLA 123

Query: 204 KLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIV 263
            L  LEL  N  + +   A   L  L  L L++N + S  S       A     SL  + 
Sbjct: 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS------YAFNRVPSLMRLD 177

Query: 264 LAE-NPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSL 322
           L E   ++ +   +   L  +++ + +  CNI   +P  +  L+ L +L +  N+     
Sbjct: 178 LGELKKLEYISEGAFEGLF-NLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIR 234

Query: 323 PITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRI 382
           P +   L  L+ L + N++      + F   + L +  L  N LS         L  L  
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294

Query: 383 LSL 385
           L L
Sbjct: 295 LHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 88.3 bits (219), Expect = 2e-19
 Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 9/215 (4%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
             +L  LEVL L  N +   I    F  L+S++T L+  +N LT   P    E L +L+ 
Sbjct: 95  FRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNT-LELFDNWLT-VIPSGAFEYLSKLRE 151

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLS-FNQFTGRIPRDLGNSTKLKLLYLSFNNLIGE 120
           L++  N  +            L R+ L    +              LK L L   N+  +
Sbjct: 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-D 210

Query: 121 IPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPN 180
           +P  +  L  LE L +  N+     P +   +S+LK L ++N+ +S  +       GL +
Sbjct: 211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIER-NAFDGLAS 267

Query: 181 LEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSF 215
           L  L L  NN S      F     L  L L +N +
Sbjct: 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 9/141 (6%)

Query: 5   NLAELEVLVL-NNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
            +  L  L L     L   I    F  L ++   L+    ++    P+     L  L+ L
Sbjct: 169 RVPSLMRLDLGELKKLE-YISEGAFEGLFNLKY-LNLGMCNIK-DMPNL--TPLVGLEEL 223

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
            +S N F    P +      L ++ +  +Q +            L  L L+ +N +  +P
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA-HNNLSSLP 282

Query: 123 QEI-GSLRNLEILRIDQNNLV 142
            ++   LR L  L +  N   
Sbjct: 283 HDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLK 60
            L  L  LE L ++ N     I    F  LSS+   L   N+ ++     +  +GL  L 
Sbjct: 213 NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKK-LWVMNSQVS-LIERNAFDGLASLV 269

Query: 61  GLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQF 93
            L +++N       +     + L  + L  N +
Sbjct: 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  101 bits (254), Expect = 6e-24
 Identities = 70/366 (19%), Positives = 123/366 (33%), Gaps = 60/366 (16%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           EL N + L+++ ++NN L   +P    +L      +   NN L    P+   + LP L  
Sbjct: 148 ELQNSSFLKIIDVDNNSLK-KLPDLPPSL----EFIAAGNNQLE-ELPE--LQNLPFLTA 199

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           +Y   N  K  +P+     + +       N        +L N   L  +Y   NNL+  +
Sbjct: 200 IYADNNSLKK-LPDLPLSLESIV---AGNNILE--ELPELQNLPFLTTIYAD-NNLLKTL 252

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
           P    SL  L +     +N +  +P+   +++ L     + + LS   P         NL
Sbjct: 253 PDLPPSLEALNVR----DNYLTDLPELPQSLTFLDVSENIFSGLSELPP---------NL 299

Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241
             L    N     I S       L  L ++ N    L P        LERL    N+L  
Sbjct: 300 YYLNASSNE----IRSLCDLPPSLEELNVSNNKLIEL-PALPP---RLERLIASFNHLAE 351

Query: 242 STSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKE 301
                          ++LK + +  NP+    P    ++        +   +    +P+ 
Sbjct: 352 VPELP----------QNLKQLHVEYNPLR-EFPDIPESVE------DLRMNSHLAEVPEL 394

Query: 302 IGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYL 361
             NL    +L +  N L    P     ++ L    + + +   P         +L     
Sbjct: 395 PQNL---KQLHVETNPLR-EFPDIPESVEDL---RMNSERVVDPYEFAHETTDKLEDDVF 447

Query: 362 NRNKLS 367
             +   
Sbjct: 448 EHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  101 bits (253), Expect = 9e-24
 Identities = 83/387 (21%), Positives = 141/387 (36%), Gaps = 57/387 (14%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV 64
               LE LV + N LT  +P    +L S+    + +  +L+           P L+ L V
Sbjct: 89  LPPHLESLVASCNSLT-ELPELPQSLKSLLV-DNNNLKALSDL--------PPLLEYLGV 138

Query: 65  SYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQE 124
           S NQ +  +P  L +   L  + +  N    ++P    +   L+ +    N L  E   E
Sbjct: 139 SNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQL--EELPE 190

Query: 125 IGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGL 184
           + +L  L  +  D N+L   +PD   +   L+++   NN L   LP    L  LP L  +
Sbjct: 191 LQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNILE-ELPE---LQNLPFLTTI 242

Query: 185 ILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTS 244
               N    ++P        L  L +  N  + L P+    L  L+      + L+    
Sbjct: 243 YADNNLLK-TLPDLP---PSLEALNVRDNYLTDL-PELPQSLTFLDVSENIFSGLSELPP 297

Query: 245 ELMSLF-------SALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGR 297
            L  L        S      SL+ + ++ N +   LP+    L    E +     ++   
Sbjct: 298 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL----ERLIASFNHLA-E 351

Query: 298 IPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLY 357
           +P+      NL +L + YN L    P     ++ L+         E P          L 
Sbjct: 352 VPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELP--------QNLK 399

Query: 358 KFYLNRNKLSGSIPSCLGDLNSLRILS 384
           + ++  N L    P     +  LR+ S
Sbjct: 400 QLHVETNPLR-EFPDIPESVEDLRMNS 425

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 70/390 (17%), Positives = 130/390 (33%), Gaps = 66/390 (16%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV 64
           +   L+  + +++ LT  +P    N+ S +     + +    + P    E          
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTE-YYNAWSEWERNAPPGNGEQR-------- 58

Query: 65  SYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQE 124
                   + + L   ++   + L+    +  +P    +   L+ L  S N+L  E+P+ 
Sbjct: 59  --EMAVSRLRDCL--DRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPEL 109

Query: 125 IGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGL 184
             SL++L +   +   L    P        L+ L + NN L   LP    L     L+ +
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLPE---LQNSSFLKII 158

Query: 185 ILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTS 244
            +  N+    +P    +   L ++    N    L    L  L  L  +   +N L     
Sbjct: 159 DVDNNSLK-KLPDLPPS---LEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPD 212

Query: 245 ELMSL------------FSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKC 292
             +SL               L N   L  I    N +   LP    +L    E + +   
Sbjct: 213 LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL-KTLPDLPPSL----EALNVRDN 267

Query: 293 NIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCH 352
            +   +P+   +L  L      ++ LS   P        L  L+  +N+    I      
Sbjct: 268 YLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNE----IRSLCDL 315

Query: 353 FSRLYKFYLNRNKLSGSIPSCLGDLNSLRI 382
              L +  ++ NKL   +P+    L  L  
Sbjct: 316 PPSLEELNVSNNKLI-ELPALPPRLERLIA 344

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 92.8 bits (231), Expect = 6e-21
 Identities = 64/303 (21%), Positives = 99/303 (32%), Gaps = 48/303 (15%)

Query: 83  LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLV 142
           L       +  T  +P +  N       Y +++      P   G  R + + R+      
Sbjct: 13  LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD- 70

Query: 143 GFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNA 202
                          L L N  LS +LP        P+LE L+   N+ +  +P    + 
Sbjct: 71  ----------RQAHELELNNLGLS-SLPEL-----PPHLESLVASCNSLT-ELPELPQSL 113

Query: 203 SKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVI 262
             L        + S L P        LE LG+ +N L             L N   LK+I
Sbjct: 114 KSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLEK--------LPELQNSSFLKII 158

Query: 263 VLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSL 322
            +  N +   LP    +L    E I      +      E+ NL  LT +    N+L   L
Sbjct: 159 DVDNNSLK-KLPDLPPSL----EFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK-KL 210

Query: 323 PITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRI 382
           P     L+    +   NN  E     E  +   L   Y + N L  ++P     L +L +
Sbjct: 211 PDLPLSLES---IVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNV 264

Query: 383 LSL 385
              
Sbjct: 265 RDN 267

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 21/127 (16%)

Query: 272 VLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRL-- 329
           + P ++ N  +  +E   +  N+   +P E  N+ + T+    ++    + P   G    
Sbjct: 3   INPRNVSNTFL--QEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQRE 59

Query: 330 -----------KKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLN 378
                      ++   L+L N      +P    H   L     + N L+  +P     L 
Sbjct: 60  MAVSRLRDCLDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLK 114

Query: 379 SLRILSL 385
           SL + + 
Sbjct: 115 SLLVDNN 121

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 98.7 bits (246), Expect = 6e-23
 Identities = 67/262 (25%), Positives = 108/262 (41%), Gaps = 19/262 (7%)

Query: 82  ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNN 140
           + S+V          +P  +  ST  +LL L  N  I  I       LR+LEIL++ +N+
Sbjct: 44  QFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNH 99

Query: 141 LVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFF 200
           +          ++ L TL L +N L+  +P+    + L  L+ L L  N    SIPS+ F
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGA-FVYLSKLKELWLRNNPIE-SIPSYAF 156

Query: 201 NA-SKLYYLELA-YNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKS 258
           N    L  L+L      S +   A   L NL  L L    L             L     
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--------IPNLTPLIK 208

Query: 259 LKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNL 318
           L  + L+ N +  + P S   L   +++++M +  I         NL +L +++L +NNL
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLM-HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

Query: 319 SGSLPITLGRLKKLQGLDLQNN 340
           +         L  L+ + L +N
Sbjct: 268 TLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.7 bits (233), Expect = 3e-21
 Identities = 54/234 (23%), Positives = 85/234 (36%), Gaps = 11/234 (4%)

Query: 7   AELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVS 65
               +L L+ N +   I  + F +L  +   L  S N +  +       GL  L  L + 
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEI-LQLSRNHIR-TIEIGAFNGLANLNTLELF 120

Query: 66  YNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDL-GNSTKLKLLYLSFNNLIGEIPQE 124
            N+          +  +L  + L  N     IP         L+ L L     +  I + 
Sbjct: 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 125 I-GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEG 183
               L NL  L +   NL   IP  +  +  L  L L  N LS  +       GL +L+ 
Sbjct: 180 AFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGS-FQGLMHLQK 235

Query: 184 LILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSN 237
           L +  +       + F N   L  + LA+N+ + L       L +LER+ L  N
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.0 bits (226), Expect = 3e-20
 Identities = 58/243 (23%), Positives = 98/243 (40%), Gaps = 14/243 (5%)

Query: 144 FIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNAS 203
            +PD I   +  + L+L  N +   +  +     L +LE L L  N+        F   +
Sbjct: 57  EVPDGIS--TNTRLLNLHENQIQ-IIKVNS-FKHLRHLEILQLSRNHIRTIEIGAFNGLA 112

Query: 204 KLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIV 263
            L  LEL  N  + +   A   L  L+ L L++N + S  S       A     SL+ + 
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS------YAFNRIPSLRRLD 166

Query: 264 LAE-NPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSL 322
           L E   +  +   +   LS ++  + +  CN+   IP  +  LI L +L L  N+LS   
Sbjct: 167 LGELKRLSYISEGAFEGLS-NLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIR 223

Query: 323 PITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRI 382
           P +   L  LQ L +  ++ +    + F +   L +  L  N L+         L+ L  
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283

Query: 383 LSL 385
           + L
Sbjct: 284 IHL 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.0 bits (226), Expect = 3e-20
 Identities = 54/258 (20%), Positives = 90/258 (34%), Gaps = 29/258 (11%)

Query: 31  SSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSF 90
           S+  + +     +L    PD +       + L +  NQ +    N+  H + L  + LS 
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR 97

Query: 91  NQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLVGFIPDTI 149
           N               L  L L  +N +  IP      L  L+ L +  N +   IP   
Sbjct: 98  NHIRTIEIGAFNGLANLNTLELF-DNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

Query: 150 F-NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYL 208
           F  + +L+ L L        +       GL NL  L L + N    IP+      KL  L
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDEL 212

Query: 209 ELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS-------STSELMSLF----------- 250
           +L+ N  S + P +   L +L++L +  + +         +   L+ +            
Sbjct: 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272

Query: 251 SALVNCKSLKVIVLAENP 268
                   L+ I L  NP
Sbjct: 273 DLFTPLHHLERIHLHHNP 290

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.8 bits (145), Expect = 5e-10
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 9/141 (6%)

Query: 5   NLAELEVLVL-NNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
            +  L  L L     L+  I    F  LS++   L+ +  +L    P+     L +L  L
Sbjct: 158 RIPSLRRLDLGELKRLS-YISEGAFEGLSNLRY-LNLAMCNLR-EIPNL--TPLIKLDEL 212

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
            +S N      P +      L ++ +  +Q          N   L  + L+ NNL   +P
Sbjct: 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLP 271

Query: 123 QEI-GSLRNLEILRIDQNNLV 142
            ++   L +LE + +  N   
Sbjct: 272 HDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLK 60
            L  L +L+ L L+ N L+  I    F  L  +   L    + +      +  + L  L 
Sbjct: 202 NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQK-LWMIQSQIQ-VIERNAFDNLQSLV 258

Query: 61  GLYVSYNQFKGPIPNNLWHCKELSRVSLSFN 91
            + +++N       +       L R+ L  N
Sbjct: 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.9 bits (234), Expect = 5e-22
 Identities = 54/232 (23%), Positives = 87/232 (37%), Gaps = 17/232 (7%)

Query: 40  SNNSLTGSFPDDMCEGLPR-LKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIP 98
               L  + P     G+P   + +++  N+       +   C+ L+ + L  N       
Sbjct: 19  PQQGLQ-AVPV----GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 99  RDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLVGFIPDTIF-NMSTLK 156
                   L+ L LS N  +  +       L  L  L +D+  L   +   +F  ++ L+
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQ 132

Query: 157 TLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFS 216
            L L +N L   LP       L NL  L L  N  S      F     L  L L  N  +
Sbjct: 133 YLYLQDNALQ-ALPDDT-FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 217 GLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENP 268
            + P A   L  L  L L +N L++  +E      AL   ++L+ + L +NP
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTE------ALAPLRALQYLRLNDNP 236

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.1 bits (206), Expect = 3e-18
 Identities = 50/223 (22%), Positives = 82/223 (36%), Gaps = 14/223 (6%)

Query: 120 EIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLP 179
            +P  I      + + +  N +      +      L  L L +N L+  + +     GL 
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDA-AAFTGLA 80

Query: 180 NLEGLILGLNNFSGSIPS-FFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNY 238
            LE L L  N    S+    F    +L+ L L       L P     L  L+ L LQ N 
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

Query: 239 LTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRI 298
           L +   +         +  +L  + L  N +  V   +   L  S++ + +++  +   +
Sbjct: 141 LQALPDD------TFRDLGNLTHLFLHGNRISSVPERAFRGLH-SLDRLLLHQNRVA-HV 192

Query: 299 PKEI-GNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNN 340
                 +L  L  L L  NNLS      L  L+ LQ L L +N
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.0 bits (203), Expect = 6e-18
 Identities = 52/226 (23%), Positives = 85/226 (37%), Gaps = 12/226 (5%)

Query: 15  NNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIP 74
               L   +P     + + S  +    N ++   P         L  L++  N       
Sbjct: 19  PQQGLQ-AVPV---GIPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 75  NNLWHCKELSRVSLSFNQFTGRIPRD-LGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLE 132
                   L ++ LS N     +         +L  L+L     + E+   +   L  L+
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQ 132

Query: 133 ILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNF 191
            L +  N L   +PD  F ++  L  L L  N +S ++P      GL +L+ L+L  N  
Sbjct: 133 YLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERA-FRGLHSLDRLLLHQNRV 189

Query: 192 SGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSN 237
           +   P  F +  +L  L L  N+ S L  +AL  LR L+ L L  N
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 45/212 (21%), Positives = 73/212 (34%), Gaps = 9/212 (4%)

Query: 7   AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSY 66
           A  + + L+ N ++  +PA+ F      T L   +N L          GL  L+ L +S 
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89

Query: 67  NQFKGPIPNNLW-HCKELSRVSLSFNQFTGRIPRD-LGNSTKLKLLYLSFNNLIGEIPQE 124
           N     +    +     L  + L        +          L+ LYL  +N +  +P +
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ-DNALQALPDD 147

Query: 125 I-GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEG 183
               L NL  L +  N +          + +L  L L  N ++ ++        L  L  
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHP-HAFRDLGRLMT 205

Query: 184 LILGLNNFSGSIPSFFFNASKLYYLELAYNSF 215
           L L  NN S            L YL L  N +
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.3 bits (191), Expect = 3e-16
 Identities = 50/208 (24%), Positives = 74/208 (35%), Gaps = 8/208 (3%)

Query: 179 PNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNY 238
              + + L  N  S    + F     L  L L  N  + +   A   L  LE+L L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 239 LTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRI 298
              S        +       L  + L    +  + P     L+ +++ +Y+    +   +
Sbjct: 92  QLRSVDP-----ATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNALQ-AL 144

Query: 299 PKEI-GNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLY 357
           P +   +L NLT L L  N +S         L  L  L L  N+     PH F    RL 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 358 KFYLNRNKLSGSIPSCLGDLNSLRILSL 385
             YL  N LS      L  L +L+ L L
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRL 232

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.9 bits (182), Expect = 4e-15
 Identities = 52/192 (27%), Positives = 79/192 (41%), Gaps = 9/192 (4%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
                 L +L L++N+L   I A+ F  L+ +   LD S+N+   S       GL RL  
Sbjct: 52  FRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQ-LDLSDNAQLRSVDPATFHGLGRLHT 109

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRD-LGNSTKLKLLYLSFNNLIGE 120
           L++     +   P        L  + L  N     +P D   +   L  L+L   N I  
Sbjct: 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLH-GNRISS 167

Query: 121 IPQEI-GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLP 179
           +P+     L +L+ L + QN +    P    ++  L TL L  N LS  LP+   L  L 
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTE-ALAPLR 225

Query: 180 NLEGLILGLNNF 191
            L+ L L  N +
Sbjct: 226 ALQYLRLNDNPW 237

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.3 bits (235), Expect = 7e-22
 Identities = 71/339 (20%), Positives = 120/339 (35%), Gaps = 46/339 (13%)

Query: 8   ELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYN 67
            L V+  ++  L   +P     +S  +T LD  NN ++     D  +GL  L  L +  N
Sbjct: 34  HLRVVQCSDLGLK-AVPK---EISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN 88

Query: 68  QFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI-G 126
           +            ++L ++ +S N     IP +L   + L  L +  +N I ++P+ +  
Sbjct: 89  KISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIH-DNRIRKVPKGVFS 144

Query: 127 SLRNLEILRIDQNNL-VGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLI 185
            LRN+  + +  N L         F+   L  L +    L+  +P          L  L 
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKD----LPETLNELH 199

Query: 186 LGLNNFSGSIPSFFF-NASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTS 244
           L  N    +I        SKLY L L +N    +   +L  L  L  L L +N L+    
Sbjct: 200 LDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR--- 255

Query: 245 ELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGN 304
               + + L + K L+V+ L  N +  V  +    +   V                    
Sbjct: 256 ----VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV-------------------K 292

Query: 305 LINLTKLSLGYNNLSGSL--PITLGRLKKLQGLDLQNNK 341
                 +SL  N +      P T   +     +   N K
Sbjct: 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.5 bits (233), Expect = 1e-21
 Identities = 61/266 (22%), Positives = 94/266 (35%), Gaps = 16/266 (6%)

Query: 7   AELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVS 65
            +  +L L NN ++  +    F  L  +   L   NN ++    +     L +L+ LY+S
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHL-YALVLVNNKIS-KIHEKAFSPLRKLQKLYIS 110

Query: 66  YNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRD-LGNSTKLKLLYLSFNNL-IGEIPQ 123
            N     IP NL     L  + +  N+   ++P+        +  + +  N L       
Sbjct: 111 KNHLVE-IPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 124 EIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEG 183
                  L  LRI +  L G IP  +    TL  L L +N +   +     L+    L  
Sbjct: 167 GAFDGLKLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQ-AIELED-LLRYSKLYR 221

Query: 184 LILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSST 243
           L LG N               L  L L  N  S  +P  L  L+ L+ + L +N +T   
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280

Query: 244 SELMSLFSALVNCKSLKVIVLAENPV 269
                     V       I L  NPV
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.5 bits (220), Expect = 8e-20
 Identities = 50/245 (20%), Positives = 93/245 (37%), Gaps = 26/245 (10%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLY 63
            L +L+ L ++ N L   IP ++  +L      L   +N +    P  +  GL  +  + 
Sbjct: 100 PLRKLQKLYISKNHLV-EIPPNLPSSLVE----LRIHDNRIR-KVPKGVFSGLRNMNCIE 153

Query: 64  VSYNQFK-GPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
           +  N  +        +   +L+ + +S  + T  IP+DL     L  L+L  +N I  I 
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLD-HNKIQAIE 209

Query: 123 QEI-GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
            E       L  L +  N +      ++  + TL+ L L NN LS  +P+   L  L  L
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG--LPDLKLL 266

Query: 182 EGLILGLNNFSGSIPSFFF-------NASKLYYLELAYN--SFSGLIPKALGQLRNLERL 232
           + + L  NN +  +    F         +    + L  N   +  + P     + +   +
Sbjct: 267 QVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325

Query: 233 GLQSN 237
              + 
Sbjct: 326 QFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 84.3 bits (209), Expect = 2e-18
 Identities = 63/287 (21%), Positives = 106/287 (36%), Gaps = 28/287 (9%)

Query: 107 LKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLS 166
           L+++  S   L   +P+EI    +  +L +  N++     D    +  L  L L+NN +S
Sbjct: 35  LRVVQCSDLGLK-AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 167 GNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQL 226
             +   K    L  L+ L +  N+    IP      S L  L +  N    +       L
Sbjct: 92  -KIHE-KAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGL 146

Query: 227 RNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEE 286
           RN+  + +  N L +S  E  + F  L     L  + ++E  + G+       L     E
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGA-FDGL----KLNYLRISEAKLTGIPKDLPETL----NE 197

Query: 287 IYMYKCNIHGRIPKEI-GNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGP 345
           +++    I   I  E       L +L LG+N +      +L  L  L+ L L NNK    
Sbjct: 198 LHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR- 255

Query: 346 IPHEFCHFSRLYKFYLNRNKLSGSIPS-------CLGDLNSLRILSL 385
           +P        L   YL+ N ++  +                   +SL
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISL 301

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 36/193 (18%), Positives = 69/193 (35%), Gaps = 15/193 (7%)

Query: 3   LGNLAELEVLVLNNNLLTGT-IPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
              L  +  + +  N L  +      F+   ++  L  S   LT   P D+      L  
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNY-LRISEAKLT-GIPKDL---PETLNE 197

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L++ +N+ +     +L    +L R+ L  NQ        L     L+ L+L  N L   +
Sbjct: 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIF-------NMSTLKTLSLLNNTLSGNLPSSKK 174
           P  +  L+ L+++ +  NN+   +    F         +    +SL NN +         
Sbjct: 257 PAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315

Query: 175 LIGLPNLEGLILG 187
              + +   +  G
Sbjct: 316 FRCVTDRLAIQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 21/140 (15%), Positives = 40/140 (28%), Gaps = 25/140 (17%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           L   ++L  L L +N +   I       L ++   L   NN L+   P  +   L  L+ 
Sbjct: 213 LLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRE-LHLDNNKLS-RVPAGL-PDLKLLQV 268

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNL-IGE 120
           +Y+  N                    +  N F                + L  N +   E
Sbjct: 269 VYLHTNNIT----------------KVGVNDFCP--VGFGVKRAYYNGISLFNNPVPYWE 310

Query: 121 IPQEI-GSLRNLEILRIDQN 139
           +       + +   ++    
Sbjct: 311 VQPATFRCVTDRLAIQFGNY 330

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 94.2 bits (234), Expect = 3e-21
 Identities = 62/369 (16%), Positives = 120/369 (32%), Gaps = 17/369 (4%)

Query: 29  NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSL 88
           +LS  +T L+ S N ++          L +L+ L +S+N+ +    +     +EL  + L
Sbjct: 18  DLSQKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76

Query: 89  SFNQFTGRIPRDLGNSTKLKLLYLSFNNLIG-EIPQEIGSLRNLEILRIDQNNLVGFIPD 147
           S N+              LK L LSFN      I +E G++  L+ L +   +L      
Sbjct: 77  SHNKLVKISCHPT---VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 148 TIFNMSTLK-TLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLY 206
            I +++  K  L L         P   +     +L  +      F   +       + L 
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 207 YLELAYNSFSGLIPKALGQLRNLERLGLQSN---YLTSSTSELMSLFSALVNCKSLKVIV 263
              +            L  L  L+     SN       +T         LV   ++    
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 264 LAENPVDGVLPSSIGNLS-VSVEEIYMYKCNIHGRIPKEIG---NLINLTKLSLGYNNLS 319
           ++   + G L     + S  S++ + +++         +        N+   +   +   
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313

Query: 320 GSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLG---D 376
               +   ++     LD  NN     +     H + L    L  N+L   +         
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQ 372

Query: 377 LNSLRILSL 385
           + SL+ L +
Sbjct: 373 MKSLQQLDI 381

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 89.5 bits (222), Expect = 1e-19
 Identities = 69/382 (18%), Positives = 129/382 (33%), Gaps = 32/382 (8%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           E GN+++L+ L L+   L  +    I +L+     L           P+    GL     
Sbjct: 110 EFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPE----GLQDFNT 165

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN------ 115
             +          + +      +  +L  +     +  +  +     L  L  N      
Sbjct: 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225

Query: 116 ---------NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMST--LKTLSLLNNT 164
                    N    I Q +     +    I    L G +    F+ S   LK LS+    
Sbjct: 226 TLNNIETTWNSFIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVV 284

Query: 165 LSG-NLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKAL 223
                 P S       N+      ++             S   +L+ + N  +  + +  
Sbjct: 285 SDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC 344

Query: 224 GQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVS 283
           G L  LE L LQ N L      L  +       KSL+ + +++N V         + + S
Sbjct: 345 GHLTELETLILQMNQLKE----LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400

Query: 284 VEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFE 343
           +  + M    +   I + +     +  L L  N +  S+P  + +L+ LQ L++ +N+ +
Sbjct: 401 LLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457

Query: 344 GPIPHE-FCHFSRLYKFYLNRN 364
             +P   F   + L K +L+ N
Sbjct: 458 S-VPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 80.7 bits (199), Expect = 1e-16
 Identities = 62/400 (15%), Positives = 131/400 (32%), Gaps = 34/400 (8%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV 64
              ELE L L++N L         NL      LD S N+            + +LK L +
Sbjct: 67  FNQELEYLDLSHNKLVKISCHPTVNL----KHLDLSFNAFDALPICKEFGNMSQLKFLGL 122

Query: 65  SYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYL------SFNNLI 118
           S    +      + H      + +    +  +   +       + L++       F+ ++
Sbjct: 123 STTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL 182

Query: 119 GEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMST---LKTLSLLNNTLSGN-LPSSKK 174
               + + +L    I  + ++N   +    +  + T   L  L+L N   + N      +
Sbjct: 183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ 242

Query: 175 LIGLPNLEGLILGLNNFSGSIPSFFFNAS-----KLYYLELAYNSFSGLIPKALGQLRNL 229
           L+    +    +      G +    F+ S      L   ++  + F            N+
Sbjct: 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNM 302

Query: 230 ERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYM 289
                  +          S             +  + N +   +  + G+L   +E + +
Sbjct: 303 NIKNFTVSGTRMVHMLCPS------KISPFLHLDFSNNLLTDTVFENCGHL-TELETLIL 355

Query: 290 YKCNIHGRIPKEIG---NLINLTKLSLGYNNLSGSLP-ITLGRLKKLQGLDLQNNKFEGP 345
               +   + K       + +L +L +  N++S           K L  L++ +N     
Sbjct: 356 QMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414

Query: 346 IPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           I    C   R+    L+ NK+  SIP  +  L +L+ L++
Sbjct: 415 IFR--CLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNV 451

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.0 bits (192), Expect = 7e-16
 Identities = 43/244 (17%), Positives = 90/244 (36%), Gaps = 13/244 (5%)

Query: 1   MELGNLAELEVLVLNNNLLTGTIPASIFNLSSIS----TGLDFSNNSLTGSFPDDMCEGL 56
           ++L     +    ++N  L G +    F+ S  S    +     ++         + E  
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIF 299

Query: 57  PRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNN 116
             +     + +  +               +  S N  T  +  + G+ T+L+ L L  N 
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 117 L--IGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSK 173
           L  + +I +    +++L+ L I QN++             +L +L++ +N L+  +    
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC- 418

Query: 174 KLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLG 233
                P ++ L L  N    SIP        L  L +A N    +      +L +L+++ 
Sbjct: 419 ---LPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474

Query: 234 LQSN 237
           L +N
Sbjct: 475 LHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 39/214 (18%), Positives = 78/214 (36%), Gaps = 10/214 (4%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV 64
           +L  L +  + +++      + I+ + S     +F+ +             +     L  
Sbjct: 274 SLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDF 331

Query: 65  SYNQFKGPIPNNLWHCKELSRVSLSFNQFT--GRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
           S N     +  N  H  EL  + L  NQ     +I         L+ L +S N++  +  
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391

Query: 123 QEI-GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
           +      ++L  L +  N L   I   +     +K L L +N +  ++P  K+++ L  L
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIP--KQVVKLEAL 446

Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSF 215
           + L +  N         F   + L  + L  N +
Sbjct: 447 QELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.3 bits (146), Expect = 4e-10
 Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 8/141 (5%)

Query: 4   GNLAELEVLVLNNNLLTGTIP--ASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           G+L ELE L+L  N L   +   A +         LD S NS++       C     L  
Sbjct: 345 GHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L +S N     I   L     +  + L  N+    IP+ +     L+ L ++ N L   +
Sbjct: 404 LNMSSNILTDTIFRCLPP--RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL-KSV 459

Query: 122 PQEI-GSLRNLEILRIDQNNL 141
           P  I   L +L+ + +  N  
Sbjct: 460 PDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 37/221 (16%), Positives = 64/221 (28%), Gaps = 18/221 (8%)

Query: 171 SSKKLIGLP-----NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQ 225
           S   LI +P         L +  N  S    S   + SKL  L +++N    L       
Sbjct: 8   SKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF 67

Query: 226 LRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGV-LPSSIGNLSVSV 284
            + LE L L  N L   +              +LK + L+ N  D + +    GN+S  +
Sbjct: 68  NQELEYLDLSHNKLVKISCH---------PTVNLKHLDLSFNAFDALPICKEFGNMS-QL 117

Query: 285 EEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEG 344
           + + +   ++       I +L     L +               L+      L       
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY--GEKEDPEGLQDFNTESLHIVFPTN 175

Query: 345 PIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
              H     S      L  + +   +           +  L
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL 216

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 92.5 bits (230), Expect = 4e-21
 Identities = 50/245 (20%), Positives = 95/245 (38%), Gaps = 15/245 (6%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           L     L+ LVL +N +  TI    F +L S+   LD S N L+ +      + L  L  
Sbjct: 72  LQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEH-LDLSYNYLS-NLSSSWFKPLSSLTF 128

Query: 62  LYVSYNQFKGPIPNNL-WHCKELSRVSLSFNQFTGRIP-RDLGNSTKLKLLYLSFNNLIG 119
           L +  N +K     +L  H  +L  + +       +I  +D    T L+ L +  ++L  
Sbjct: 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188

Query: 120 EIPQEIGSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSS------ 172
             P+ + S++N+  L +     +  + +      S+++ L L +  L     S       
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247

Query: 173 KKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERL 232
             LI       + +   +    +       S L  LE + N    +      +L +L+++
Sbjct: 248 NSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306

Query: 233 GLQSN 237
            L +N
Sbjct: 307 WLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 92.1 bits (229), Expect = 5e-21
 Identities = 56/289 (19%), Positives = 104/289 (35%), Gaps = 32/289 (11%)

Query: 82  ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNN 140
            +  + LS N+ T     DL     L+ L L+ +N I  I ++   SL +LE L +  N 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLT-SNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 141 LVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFF 199
           L   +  + F  +S+L  L+LL N     L  +     L  L+ L +G  +    I    
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 200 F-NASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKS 258
           F   + L  LE+  +      PK+L  ++N+  L L                    +   
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE---IFVDVTSS--- 223

Query: 259 LKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNL 318
           ++ + L +  +D    S +     +                  +        + +   +L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNS-----------------LIKKFTFRNVKITDESL 266

Query: 319 SGSLPITLGRLKKLQGLDLQNNKFEGPIPHE-FCHFSRLYKFYLNRNKL 366
              +   L ++  L  L+   N+ +  +P   F   + L K +L+ N  
Sbjct: 267 F-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.6 bits (225), Expect = 2e-20
 Identities = 54/307 (17%), Positives = 106/307 (34%), Gaps = 36/307 (11%)

Query: 40  SNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPR 99
           S+ SL  S P  +      +K L +S N+      ++L  C  L  + L+ N        
Sbjct: 39  SSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94

Query: 100 DLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKT 157
              +   L+ L LS  N +  +       L +L  L +  N        ++F +++ L+ 
Sbjct: 95  SFSSLGSLEHLDLS-YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153

Query: 158 LSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSG 217
           L + N      +   K   GL  LE L +  ++     P    +   + +L L       
Sbjct: 154 LRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212

Query: 218 LIPKALGQLRNLERLGLQSNYLTSSTSELMS--LFSALVNCKSLKVIVLAENPVDGVLPS 275
           L+   +    ++E L L+   L +     +S    ++L+   + + + + +  +      
Sbjct: 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL------ 266

Query: 276 SIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGL 335
                                ++ K +  +  L +L    N L         RL  LQ +
Sbjct: 267 --------------------FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306

Query: 336 DLQNNKF 342
            L  N +
Sbjct: 307 WLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.0 bits (208), Expect = 3e-18
 Identities = 63/318 (19%), Positives = 111/318 (34%), Gaps = 51/318 (16%)

Query: 80  CKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQ 138
           C        S       IP  L  +  +K L LS N  I  I         NL+ L +  
Sbjct: 30  CDRNGICKGSSGSLN-SIPSGL--TEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTS 85

Query: 139 NNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIP-- 196
           N +     D+  ++ +L+ L L  N LS NL SS     L +L  L L  N +  ++   
Sbjct: 86  NGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSW-FKPLSSLTFLNLLGNPYK-TLGET 142

Query: 197 SFFFNASKLYYLELAYN-SFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVN 255
           S F + +KL  L +    +F+ +  K    L  LE L + ++ L S   +      +L +
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK------SLKS 196

Query: 256 CKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGY 315
            +++  ++L       +L   +   S                         ++  L L  
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTS-------------------------SVECLELRD 231

Query: 316 NNLSG----SLPI----TLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLS 367
            +L       L      +L +    + + + +      +       S L +   +RN+L 
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK 290

Query: 368 GSIPSCLGDLNSLRILSL 385
                    L SL+ + L
Sbjct: 291 SVPDGIFDRLTSLQKIWL 308

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.4 bits (170), Expect = 3e-13
 Identities = 44/221 (19%), Positives = 77/221 (34%), Gaps = 15/221 (6%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLY 63
           +L  LE L L+ N L+  + +S F  LSS+ T L+   N         +   L +L+ L 
Sbjct: 98  SLGSLEHLDLSYNYLS-NLSSSWFKPLSSL-TFLNLLGNPYKTLGETSLFSHLTKLQILR 155

Query: 64  VSYNQFKGPIPNN-LWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
           V        I          L  + +  +      P+ L +   +  L L        + 
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLL 214

Query: 123 QEI-GSLRNLEILRIDQNNLVGF----IPDTIFNMSTLKTLSLLNNTLSGNLPSS--KKL 175
           +       ++E L +   +L  F    +     N S +K  +  N  ++        K L
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETN-SLIKKFTFRNVKITDESLFQVMKLL 273

Query: 176 IGLPNLEGLILGLNNFSGSIPSFFFNA-SKLYYLELAYNSF 215
             +  L  L    N    S+P   F+  + L  + L  N +
Sbjct: 274 NQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 93.5 bits (232), Expect = 6e-21
 Identities = 47/281 (16%), Positives = 93/281 (33%), Gaps = 40/281 (14%)

Query: 97  IPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLK 156
                    K  L   + N  +  + +    +     L++++ NL   +PD +     + 
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLNRLNLS-SLPDNLP--PQIT 83

Query: 157 TLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFS 216
            L +  N L  +LP         +LE L    N  S ++P    +   L +L++  N  +
Sbjct: 84  VLEITQNALI-SLPEL-----PASLEYLDACDNRLS-TLPELPAS---LKHLDVDNNQLT 133

Query: 217 GLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSS 276
            L P+       LE +   +N LT                 SL+V+ +  N +   LP  
Sbjct: 134 ML-PELPA---LLEYINADNNQLTMLPELP----------TSLEVLSVRNNQL-TFLPEL 178

Query: 277 IGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTK----LSLGYNNLSGSLPITLGRLKKL 332
             +L    E + +    +   +P       +  +         N ++  +P  +  L   
Sbjct: 179 PESL----EALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPT 232

Query: 333 QGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSC 373
             + L++N     I       +    ++  R   S S    
Sbjct: 233 CTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 92.3 bits (229), Expect = 1e-20
 Identities = 53/261 (20%), Positives = 97/261 (37%), Gaps = 33/261 (12%)

Query: 1   MELGNLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRL 59
           ++   + +   L LN   L+ ++P ++   +    T L+ + N+L  S P    E    L
Sbjct: 53  LKECLINQFSELQLNRLNLS-SLPDNLPPQI----TVLEITQNALI-SLP----ELPASL 102

Query: 60  KGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIG 119
           + L    N+    +P      K L    +  NQ T  +P        L+ +    NN + 
Sbjct: 103 EYLDACDNRLST-LPELPASLKHL---DVDNNQLT-MLPELPAL---LEYINAD-NNQLT 153

Query: 120 EIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLP 179
            +P+   SL  L +    +NN + F+P+   +   L+ L +  N L  +LP+    +   
Sbjct: 154 MLPELPTSLEVLSV----RNNQLTFLPELPES---LEALDVSTNLLE-SLPAV--PVRNH 203

Query: 180 NLEGLILGL---NNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQS 236
           + E   +      N    IP    +      + L  N  S  I ++L Q           
Sbjct: 204 HSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPR 263

Query: 237 NYLTSSTSELMSLFSALVNCK 257
            Y + S  +  +L   L +  
Sbjct: 264 IYFSMSDGQQNTLHRPLADAV 284

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 92.3 bits (229), Expect = 2e-20
 Identities = 62/346 (17%), Positives = 112/346 (32%), Gaps = 66/346 (19%)

Query: 22  TIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSY---NQFKGPIPNNLW 78
           +I   I N  S+S   +   N+++     D      + +   +     N+    +   L 
Sbjct: 2   SIMLPINNNFSLS--QNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLI 58

Query: 79  HCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQ 138
              + S + L+    +  +P +L     + +L ++ N LI  +P+   SL  L+      
Sbjct: 59  --NQFSELQLNRLNLS-SLPDNLPPQ--ITVLEITQNALI-SLPELPASLEYLDAC---- 108

Query: 139 NNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSF 198
           +N +  +P+   +   LK L + NN L+  LP          LE +    N  +  +P  
Sbjct: 109 DNRLSTLPELPAS---LKHLDVDNNQLT-MLPEL-----PALLEYINADNNQLT-MLPEL 158

Query: 199 FFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKS 258
               + L  L +  N  + L         +LE L + +N L S                 
Sbjct: 159 P---TSLEVLSVRNNQLTFLPE----LPESLEALDVSTNLLES----------------- 194

Query: 259 LKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKC--NIHGRIPKEIGNLINLTKLSLGYN 316
                         LP+       S E    ++C  N    IP+ I +L     + L  N
Sbjct: 195 --------------LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN 240

Query: 317 NLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLN 362
            LS  +  +L +             F      +      L      
Sbjct: 241 PLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.2 bits (174), Expect = 1e-13
 Identities = 53/294 (18%), Positives = 91/294 (30%), Gaps = 36/294 (12%)

Query: 6   LAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVS 65
            A L+ L ++NN LT  +P     L      ++  NN LT   P    E    L+ L V 
Sbjct: 119 PASLKHLDVDNNQLT-MLPELPALL----EYINADNNQLT-MLP----ELPTSLEVLSVR 168

Query: 66  YNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSF---NNLIGEIP 122
            NQ    +P      + L    +S N     +P     +   +   + F    N I  IP
Sbjct: 169 NNQLTF-LPELPESLEALD---VSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITHIP 223

Query: 123 QEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLE 182
           + I SL     + ++ N L         +  T +                +  +  P  +
Sbjct: 224 ENILSLDPTCTIILEDNPLSSR-IRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLAD 282

Query: 183 GLILGLNNFSGSIPS--------------FFFNASKLYYLE--LAYNSFSGLIPKALGQL 226
            +         S  S              F     +L         + F   +   L +L
Sbjct: 283 AVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKL 342

Query: 227 RNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNL 280
                L  QS  + +  +E        +   +L+  +L     +G+  +  G L
Sbjct: 343 SASAELRQQSFAVAADATESCE-DRVALTWNNLRKTLLVHQASEGLFDNDTGAL 395

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 86.1 bits (213), Expect = 2e-18
 Identities = 61/375 (16%), Positives = 127/375 (33%), Gaps = 20/375 (5%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           E GNL +L  L L+           + +L      LD  +  + G   + +      +  
Sbjct: 141 EFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200

Query: 62  LYVSYNQFKGPIPN---NLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLI 118
           L    N       N   N     +LS + L+       +      +    LL ++  ++ 
Sbjct: 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260

Query: 119 GEIPQEIGSLRN-----LEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGN---LP 170
                 +   +      +E L I    +   I    F  S     SL+   +        
Sbjct: 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFS 320

Query: 171 SSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLE 230
                     +   +L +++          + S   +L    N F+  + +    L+ L+
Sbjct: 321 KEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380

Query: 231 RLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMY 290
            L LQ N L +       +     N  SL+ + ++ N ++          + S+  + + 
Sbjct: 381 TLILQRNGLKN----FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436

Query: 291 KCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHE- 349
              + G + + +     +  L L  N +  S+P  +  L+ LQ L++ +N+ +  +P   
Sbjct: 437 SNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGV 492

Query: 350 FCHFSRLYKFYLNRN 364
           F   + L   +L+ N
Sbjct: 493 FDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 84.9 bits (210), Expect = 4e-18
 Identities = 73/402 (18%), Positives = 138/402 (34%), Gaps = 39/402 (9%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV 64
            L+EL VL L++N +  ++   +F  +     LD S+N L  +        +  L+ L +
Sbjct: 74  FLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHLDL 128

Query: 65  SYNQFKG-PIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNL---IGE 120
           S+N F   P+     +  +L+ + LS  +F      DL     L L  +  + +   I  
Sbjct: 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKG 185

Query: 121 IPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGN--------LPSS 172
              E   + N  +L +  +    F      +++ L  L L N  L+          L   
Sbjct: 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL 245

Query: 173 KKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQ-----LR 227
            +   L N+    +            FF    + YL +   + +  I +         L+
Sbjct: 246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305

Query: 228 NLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEI 287
           +L    +++     S   L S+F+ + N K L +           +         S   +
Sbjct: 306 SLMIEHVKNQVFLFSKEALYSVFAEM-NIKMLSISDT------PFIHMVCPPSPSSFTFL 358

Query: 288 YMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIP 347
              +      + +    L  L  L L  N L  +        K +  L+  +        
Sbjct: 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNS 417

Query: 348 HEFCHF----SRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           H +         +    L+ N L+GS+  CL     +++L L
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDL 457

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.5 bits (196), Expect = 2e-16
 Identities = 57/372 (15%), Positives = 113/372 (30%), Gaps = 28/372 (7%)

Query: 29  NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSL 88
           +L   +  L  S NS++          L  L+ L +S+N+ +    +     ++L  + +
Sbjct: 49  DLPPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107

Query: 89  SFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQ--EIGSLRNLEILRIDQNNLVGFIP 146
           S N+    I         L+ L LSFN+    +P   E G+L  L  L +          
Sbjct: 108 SHNRLQN-ISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDL 163

Query: 147 DTIFNMSTLK-TLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKL 205
             + ++      L L++  + G    S ++     L  +    + FS  +         L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 206 Y--YLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFS----------AL 253
               ++L   +   L+       R    L +   ++ ++    + LF            +
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 254 VNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSL 313
            N    + I   E         S+    V  +     K  ++            +    L
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV-------FAEMNIKML 336

Query: 314 GYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSC 373
             ++      +          L+   N F   +        RL    L RN L  +    
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKV 395

Query: 374 LGDLNSLRILSL 385
                ++  L  
Sbjct: 396 ALMTKNMSSLET 407

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 47/289 (16%), Positives = 90/289 (31%), Gaps = 25/289 (8%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV 64
            L+ +++   N   L   +       + ++  L     +   S           ++ L +
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 65  SYNQFKGPIPNNLWHCKELSRVSLSF-----NQFTGRIPRDLGNSTKLKLLYLSFNNLIG 119
                   I    +   E +  SL         F            ++ +  LS ++   
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 120 EIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLP 179
                  S  +   L   QN     +      +  L+TL L  N L      +     + 
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403

Query: 180 NLEGLILGLNNF-SGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNY 238
           +LE L + LN+  S +       A  +  L L+ N  +G + + L     ++ L L +N 
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNR 461

Query: 239 LTSSTSELMSLFS-----------------ALVNCKSLKVIVLAENPVD 270
           + S   ++  L +                       SL+ I L +NP D
Sbjct: 462 IMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 81.7 bits (202), Expect = 4e-17
 Identities = 69/392 (17%), Positives = 117/392 (29%), Gaps = 58/392 (14%)

Query: 9   LEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQ 68
               V     +  T   S   L+++ T LD  N+S+T        E L  L  L  + N 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATL-TSLDCHNSSITDM---TGIEKLTGLTKLICTSNN 75

Query: 69  FKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSL 128
                  +L     L+ ++   N+ T     D+   TKL  L    N L      ++   
Sbjct: 76  ITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLT---KLDVSQN 126

Query: 129 RNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGL 188
             L  L   +N L       + + + L  L    N     L     +     L  L    
Sbjct: 127 PLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSF 179

Query: 189 NNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMS 248
           N  +  +         L  L    N+ + L    L Q   L  L   SN LT        
Sbjct: 180 NKIT-ELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID----- 228

Query: 249 LFSALVNCKSLKVIVLAENPVDGVLPSSIGNL---------------SVSVEEIYMYKCN 293
               +     L     + NP+  +  S++  L               + + + IY     
Sbjct: 229 ----VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEG 284

Query: 294 IHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHF 353
                  ++ +   L  L      ++    + L +  KL  L L N +    +     H 
Sbjct: 285 CRKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELTE-LD--VSHN 338

Query: 354 SRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           ++L         +     S +G + +L     
Sbjct: 339 TKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFE 368

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 76.3 bits (188), Expect = 2e-15
 Identities = 62/379 (16%), Positives = 113/379 (29%), Gaps = 51/379 (13%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
            +  L  L  L+  +N +T    +   NL    T L   +N LT    +     L +L  
Sbjct: 59  GIEKLTGLTKLICTSNNITTLDLSQNTNL----TYLACDSNKLT----NLDVTPLTKLTY 110

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L    N+       ++     L+ ++ + N  T     D+ ++T+L  L    N  I ++
Sbjct: 111 LNCDTNKLT---KLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKL 164

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
              +     L  L    N +       +     L  L+   N ++  L  +        L
Sbjct: 165 D--VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KLDLN----QNIQL 214

Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241
             L    N  +  I       ++L Y + + N  + L    +  L  L  L      L  
Sbjct: 215 TFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLE 268

Query: 242 STSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKE 301
                      L +   L             L   + + +  +  +      I      +
Sbjct: 269 ID---------LTHNTQLIYFQAEGCRKIKELD--VTHNT-QLYLLDCQAAGIT---ELD 313

Query: 302 IGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYL 361
           +     L  L L    L+  L +      KL+ L   N   +            L   + 
Sbjct: 314 LSQNPKLVYLYLNNTELT-ELDV--SHNTKLKSLSCVNAHIQD-FS-SVGKIPALNNNFE 368

Query: 362 NRNKLSGSIPSCLGDLNSL 380
              +   ++P      NSL
Sbjct: 369 AEGQTI-TMPKETLTNNSL 386

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 43/256 (16%), Positives = 80/256 (31%), Gaps = 34/256 (13%)

Query: 130 NLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLN 189
           N          +      +   ++TL +L   N++++        +  L  L  LI   N
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT----DMTGIEKLTGLTKLICTSN 74

Query: 190 NFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSL 249
           N + ++       + L YL    N  + L    +  L  L  L   +N LT         
Sbjct: 75  NIT-TLD--LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD------ 122

Query: 250 FSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLT 309
              +     L  +  A N +  +  S    L     E+  +          ++     LT
Sbjct: 123 ---VSQNPLLTYLNCARNTLTEIDVSHNTQL----TELDCHLNKKIT--KLDVTPQTQLT 173

Query: 310 KLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGS 369
            L   +N ++    + + + K L  L+   N        +     +L     + NKL+  
Sbjct: 174 TLDCSFNKITE---LDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-E 226

Query: 370 IPSCLGDLNSLRILSL 385
           I   +  L  L     
Sbjct: 227 ID--VTPLTQLTYFDC 240

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 41/286 (14%), Positives = 84/286 (29%), Gaps = 52/286 (18%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           ++     L  L  + N +               T LD +                 +L  
Sbjct: 186 DVSQNKLLNRLNCDTNNI---------------TKLDLNQ--------------NIQLTF 216

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L  S N+       ++    +L+    S N  T     D+   +KL  L+      + EI
Sbjct: 217 LDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCI-QTDLLEI 269

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
              +     L   + +    +  +   + + + L  L      +     +   L   P L
Sbjct: 270 D--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGI-----TELDLSQNPKL 320

Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241
             L L     +  +     + +KL  L              +G++  L           +
Sbjct: 321 VYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTIT 375

Query: 242 STSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEI 287
              E ++  ++L    S  ++    NP++ + P   G    +   I
Sbjct: 376 MPKETLTN-NSLTIAVSPDLLDQFGNPMN-IEPGDGGVYDQATNTI 419

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 45/265 (16%), Positives = 85/265 (32%), Gaps = 26/265 (9%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           +L    +L  L  ++N LT  I  +   L+ ++   D S N LT          L +L  
Sbjct: 207 DLNQNIQLTFLDCSSNKLT-EIDVT--PLTQLTY-FDCSVNPLT-ELDV---STLSKLTT 258

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L+            +L H  +L        +    +  D+ ++T+L LL      +  E+
Sbjct: 259 LHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT-EL 312

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
              +     L  L ++   L       + + + LK+LS +N  +  +  S  K   +P L
Sbjct: 313 D--LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQ-DFSSVGK---IPAL 363

Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSG---LIPKALGQLRNLERLGLQSNY 238
                              N S    +        G    I    G + +     +    
Sbjct: 364 NNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWEN 423

Query: 239 LTSSTSELMSLFSALVNCKSLKVIV 263
           L++    +   F++        V  
Sbjct: 424 LSTDNPAVTYTFTSENGAIVGTVTT 448

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 78.7 bits (194), Expect = 2e-16
 Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 14/215 (6%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSN-NSLTGSFPDDMCEGLPRLKGL 62
              +LE + ++ N +   I A +F NL  +   +     N+L      +  + LP L+ L
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSNLPKLHE-IRIEKANNLL-YINPEAFQNLPNLQYL 109

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDL--GNSTKLKLLYLSFNNLIGE 120
            +S    K     +  H  +   + +  N     I R+   G S +  +L+L+ N  I E
Sbjct: 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQE 168

Query: 121 IPQEIGSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLP 179
           I     +   L+ L +  NN +  +P+ +F   S    L +    +  +LPS   L  L 
Sbjct: 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY-GLENLK 226

Query: 180 NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNS 214
            L        N    +P+       L    L Y S
Sbjct: 227 KLR--ARSTYNLK-KLPT-LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.9 bits (184), Expect = 4e-15
 Identities = 37/209 (17%), Positives = 63/209 (30%), Gaps = 10/209 (4%)

Query: 37  LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR 96
                + +T   P D+         L     + +           +L ++ +S N     
Sbjct: 14  FLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 97  IPRD-LGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLVGFIPDTIFNMST 154
           I  D   N  KL  + +   N +  I  E   +L NL+ L I    +         +   
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 155 LKTLSLLNNTLSGNLPSSKKLIGLP-NLEGLILGLNNFSGSIPSFFFNASKLYYLEL-AY 212
              L + +N     +      +GL      L L  N     I +  FN ++L  L L   
Sbjct: 130 KVLLDIQDNINIHTIER-NSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDN 187

Query: 213 NSFSGLIPKALGQLRNLERLGLQSNYLTS 241
           N+   L             L +    + S
Sbjct: 188 NNLEELPNDVFHGASGPVILDISRTRIHS 216

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 73.7 bits (181), Expect = 1e-14
 Identities = 47/273 (17%), Positives = 87/273 (31%), Gaps = 45/273 (16%)

Query: 73  IPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNL 131
           IP++L   +    +     +              L+ + +S N+++  I  ++  +L  L
Sbjct: 24  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81

Query: 132 EILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNN 190
             +RI++ N + +I    F N+  L+ L + N  +  +LP   K I       L +  N 
Sbjct: 82  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHK-IHSLQKVLLDIQDNI 139

Query: 191 FSGSIPSFFFN--ASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMS 248
              +I    F   + +   L L  N    +   A    +  E     +N L    ++   
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND--- 196

Query: 249 LFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI-GNLIN 307
                       ++ ++   +                            +P     NL  
Sbjct: 197 ---VFHGASGPVILDISRTRIH--------------------------SLPSYGLENLKK 227

Query: 308 LTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNN 340
           L   S    NL   LP TL +L  L    L   
Sbjct: 228 LRARST--YNLK-KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 70.6 bits (173), Expect = 1e-13
 Identities = 50/254 (19%), Positives = 88/254 (34%), Gaps = 23/254 (9%)

Query: 138 QNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPS 197
           Q + V  IP  +        L  +   L   +       G  +LE + +  N+    I +
Sbjct: 17  QESKVTEIPSDLP--RNAIELRFVLTKLR-VIQKGA-FSGFGDLEKIEISQNDVLEVIEA 72

Query: 198 F-FFNASKLYYLELA-YNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVN 255
             F N  KL+ + +   N+   + P+A   L NL+ L + +  +             +  
Sbjct: 73  DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH--------LPDVHK 124

Query: 256 CKSLKVIVL--AENPVDGVLPS-SIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLS 312
             SL+ ++L   +N     +   S   LS     +++ K  I   I     N   L +L+
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELN 183

Query: 313 LGYNNLSGSLPI-TLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIP 371
           L  NN    LP            LD+   +      +   +  +L        K    +P
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP 240

Query: 372 SCLGDLNSLRILSL 385
           + L  L +L   SL
Sbjct: 241 T-LEKLVALMEASL 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.5 bits (190), Expect = 1e-15
 Identities = 50/277 (18%), Positives = 86/277 (31%), Gaps = 49/277 (17%)

Query: 76  NLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILR 135
                 E  + +L     T  +         +  +  + ++ I  + Q I  L N+  L 
Sbjct: 16  PDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD-IKSV-QGIQYLPNVTKLF 71

Query: 136 IDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI 195
           ++ N L    P  + N+  L  L L  N +  +L S   L  L  L+ L L  N  S  I
Sbjct: 72  LNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSS---LKDLKKLKSLSLEHNGIS-DI 124

Query: 196 PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVN 255
            +   +  +L  L L  N  + +    L +L  L+ L L+ N ++            L  
Sbjct: 125 -NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD--------IVPLAG 173

Query: 256 CKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGY 315
              L+ + L++N +     S +  L+                       L NL  L L  
Sbjct: 174 LTKLQNLYLSKNHI-----SDLRALA----------------------GLKNLDVLELFS 206

Query: 316 NNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCH 352
                        L     +   +     P       
Sbjct: 207 QECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG 243

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.4 bits (182), Expect = 1e-14
 Identities = 53/239 (22%), Positives = 88/239 (36%), Gaps = 20/239 (8%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
               AE     L    +T  +  +   L+SI   +  +N+ +         + LP +  L
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQN--ELNSI-DQIIANNSDIKSVQG---IQYLPNVTKL 70

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
           +++ N+    I   L + K L  + L  N+    +   L +  KLK L L  N  I +I 
Sbjct: 71  FLNGNKLTD-IK-PLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNG-ISDI- 124

Query: 123 QEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLE 182
             +  L  LE L +  N +       +  ++ L TLSL +N +S ++     L GL  L+
Sbjct: 125 NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVP---LAGLTKLQ 178

Query: 183 GLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241
            L L  N+ S  +         L  LEL               L     +      L +
Sbjct: 179 NLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 235

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.2 bits (179), Expect = 3e-14
 Identities = 52/267 (19%), Positives = 88/267 (32%), Gaps = 51/267 (19%)

Query: 101 LGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSL 160
                +     L   ++   + Q    L +++ +  + +++      ++  +  L  ++ 
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDI-----KSVQGIQYLPNVTK 69

Query: 161 LNNTLSGN-LPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLI 219
           L   L+GN L   K L  L NL  L L  N     + S   +  KL  L L +N  S + 
Sbjct: 70  LF--LNGNKLTDIKPLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGISDI- 124

Query: 220 PKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGN 279
              L  L  LE L L +N +T          + L     L  + L +N +     S I  
Sbjct: 125 -NGLVHLPQLESLYLGNNKITD--------ITVLSRLTKLDTLSLEDNQI-----SDIVP 170

Query: 280 LSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQN 339
           L+                       L  L  L L  N++S      L  LK L  L+L +
Sbjct: 171 LA----------------------GLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFS 206

Query: 340 NKFEGPIPHEFCHFSRLYKFYLNRNKL 366
            +      +   +             L
Sbjct: 207 QECLNKPINHQSNLVVPNTVKNTDGSL 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 50/236 (21%), Positives = 86/236 (36%), Gaps = 34/236 (14%)

Query: 7   AELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVS 65
              + L L+ N L   + +  F +   +   LD S   +  +  D   + L  L  L ++
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPEL-QVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84

Query: 66  YNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI 125
            N  +                SL+   F+G         + L+ L     NL       I
Sbjct: 85  GNPIQ----------------SLALGAFSG--------LSSLQKLVAVETNLASLENFPI 120

Query: 126 GSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGL 184
           G L+ L+ L +  N +  F     F N++ L+ L L +N +  ++     L  L  +  L
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIY-CTDLRVLHQMPLL 178

Query: 185 ILGL---NNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSN 237
            L L    N    I    F   +L  L L  N    +      +L +L+++ L +N
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 49/226 (21%), Positives = 84/226 (37%), Gaps = 17/226 (7%)

Query: 120 EIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLP 179
           +IP  +    + + L +  N L      + F+   L+ L L    +   +        L 
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGA-YQSLS 76

Query: 180 NLEGLILGLNNFSGSIPSFFFNA-SKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNY 238
           +L  LIL  N    S+    F+  S L  L     + + L    +G L+ L+ L +  N 
Sbjct: 77  HLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 239 LTSSTSELMSLFSALVNCKSLKVIVLAENPV----DGVLPSSIGNLSVSVEEIYMYKCNI 294
           + S   +L   FS L N   L+ + L+ N +       L   +  + +    + +    +
Sbjct: 136 IQS--FKLPEYFSNLTN---LEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPM 189

Query: 295 HGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNN 340
           +  I       I L +L+L  N L         RL  LQ + L  N
Sbjct: 190 N-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.8 bits (174), Expect = 5e-14
 Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 10/165 (6%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV 64
           +L+ L  L+L  N +  ++    F+  S    L     +L  S  +     L  LK L V
Sbjct: 74  SLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNV 131

Query: 65  SYNQF-KGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKL----LYLSFNNLIG 119
           ++N      +P    +   L  + LS N+       DL    ++ L    L LS N  + 
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MN 190

Query: 120 EIPQEIGSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNN 163
            I         L+ L +D N L   +PD IF  +++L+ + L  N
Sbjct: 191 FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 14/192 (7%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLY 63
           +  EL+VL L+   +  TI    + +LS +ST L  + N +  S       GL  L+ L 
Sbjct: 50  SFPELQVLDLSRCEIQ-TIEDGAYQSLSHLST-LILTGNPIQ-SLALGAFSGLSSLQKLV 106

Query: 64  VSYNQFKGPIPNNLW-HCKELSRVSLSFNQFTG-RIPRDLGNSTKLKLLYLSFNNLIGEI 121
                    + N    H K L  ++++ N     ++P    N T L+ L LS N  I  I
Sbjct: 107 AVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSI 164

Query: 122 PQEI-GSLRNLEILRID---QNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIG 177
                  L  + +L +      N + FI    F    LK L+L  N L  ++P       
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDG-IFDR 222

Query: 178 LPNLEGLILGLN 189
           L +L+ + L  N
Sbjct: 223 LTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 52/226 (23%), Positives = 80/226 (35%), Gaps = 20/226 (8%)

Query: 171 SSKKL----IGLP-NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQ 225
                      LP + + L L  N         FF+  +L  L+L+      +   A   
Sbjct: 15  MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74

Query: 226 LRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVE 285
           L +L  L L  N + S          A     SL+ +V  E  +  +    IG+L  +++
Sbjct: 75  LSHLSTLILTGNPIQSLALG------AFSGLSSLQKLVAVETNLASLENFPIGHLK-TLK 127

Query: 286 EIYMYKCNIHGRIPKEI-GNLINLTKLSLGYNNLSGSLPI-TLGRLKKLQG----LDLQN 339
           E+ +    I      E   NL NL  L L  N +  S+    L  L ++      LDL  
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 340 NKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           N     I        RL +  L+ N+L          L SL+ + L
Sbjct: 187 NPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 10/118 (8%)

Query: 4   GNLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG- 61
           G+L  L+ L + +NL+        F NL+++   LD S+N +  S        L ++   
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH-LDLSSNKIQ-SIYCTDLRVLHQMPLL 178

Query: 62  ---LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRD-LGNSTKLKLLYLSFN 115
              L +S N     I    +    L  ++L  NQ    +P       T L+ ++L  N
Sbjct: 179 NLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.1 bits (175), Expect = 9e-15
 Identities = 32/166 (19%), Positives = 58/166 (34%), Gaps = 13/166 (7%)

Query: 4   GNLAELEVLVLNNNLLTGTIPASIFNLSSIS--TGLDFSNNSLTGSFPDDMCEGLPRLKG 61
             +  L  + L N  +T      +  +        L  +N   T   P     GL  L+ 
Sbjct: 41  AQMNSLTYITLANINVT-----DLTGIEYAHNIKDLTINNIHATNYNP---ISGLSNLER 92

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L +           NL     L+ + +S +     I   +    K+  + LS+N  I +I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSG 167
              + +L  L+ L I  + +  +    I +   L  L   + T+ G
Sbjct: 153 -MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 22/165 (13%), Positives = 55/165 (33%), Gaps = 9/165 (5%)

Query: 54  EGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLS 113
             +  L  + ++           + +   +  ++++    T   P  +   + L+ L + 
Sbjct: 41  AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIM 96

Query: 114 FNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSK 173
             ++  +    +  L +L +L I  +     I   I  +  + ++ L  N    ++    
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-- 154

Query: 174 KLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGL 218
            L  LP L+ L +  +           +  KL  L     +  G 
Sbjct: 155 -LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 9e-11
 Identities = 26/215 (12%), Positives = 64/215 (29%), Gaps = 43/215 (20%)

Query: 127 SLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLIL 186
           + +      + Q++       T   M++L  ++L N  ++        +    N++ L +
Sbjct: 21  TFKAYLNGLLGQSST---ANITEAQMNSLTYITLANINVT----DLTGIEYAHNIKDLTI 73

Query: 187 GLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSEL 246
              + +    +     S L  L +     +      L  L +L  L +  +    S    
Sbjct: 74  NNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI--- 128

Query: 247 MSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLI 306
               + +     +  I L+ N        +I ++                     +  L 
Sbjct: 129 ---LTKINTLPKVNSIDLSYN-------GAITDIM-------------------PLKTLP 159

Query: 307 NLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNK 341
            L  L++ ++ +       +    KL  L   +  
Sbjct: 160 ELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 6e-10
 Identities = 28/216 (12%), Positives = 61/216 (28%), Gaps = 43/216 (19%)

Query: 105 TKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNT 164
                  L   +    I +    + +L  + +   N+       I     +K L++ N  
Sbjct: 23  KAYLNGLLG-QSSTANITEA--QMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77

Query: 165 LSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALG 224
            +    +   + GL NLE L +   + +          + L  L++++++    I   + 
Sbjct: 78  AT----NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 225 QLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSV 284
            L  +  + L  N   +           L     LK + +  + V               
Sbjct: 134 TLPKVNSIDLSYNGAITD-------IMPLKTLPELKSLNIQFDGVHDYRG---------- 176

Query: 285 EEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSG 320
                            I +   L +L      + G
Sbjct: 177 -----------------IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 26/163 (15%), Positives = 55/163 (33%), Gaps = 19/163 (11%)

Query: 225 QLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLS--V 282
             +      L  +   + T              SL  I LA   V     + +  +    
Sbjct: 21  TFKAYLNGLLGQSSTANITEA---------QMNSLTYITLANINV-----TDLTGIEYAH 66

Query: 283 SVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKF 342
           +++++ +   +        I  L NL +L +   +++      L  L  L  LD+ ++  
Sbjct: 67  NIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 343 EGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           +  I  +     ++    L+ N     I   L  L  L+ L++
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNI 166

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
           +  L+ LE L +    +T     ++  L+S+ T LD S+++   S    +   LP++  +
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSL-TLLDISHSAHDDSILTKI-NTLPKVNSI 141

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNL 117
            +SYN     I   L    EL  +++ F+         + +  KL  LY     +
Sbjct: 142 DLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 53/239 (22%), Positives = 83/239 (34%), Gaps = 42/239 (17%)

Query: 103 NSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLN 162
                  +     NL   +P ++   ++  IL + +N L  F   T+   + L  L+L  
Sbjct: 8   KVASHLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 163 NTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKA 222
             L+  L        LP L  L L  N    S+P        L  L++++N  + L   A
Sbjct: 65  AELT-KLQVDG---TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 223 LGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSV 282
           L  L  L+ L L+ N L +       L +       L+ + LA N           NL+ 
Sbjct: 120 LRGLGELQELYLKGNELKTLPP---GLLTPTPK---LEKLSLANN-----------NLT- 161

Query: 283 SVEEIYMYKCNIHGRIPKEI-GNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNN 340
                          +P  +   L NL  L L  N+L  ++P        L    L  N
Sbjct: 162 --------------ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 9e-14
 Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 14/186 (7%)

Query: 7   AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSY 66
            +  +L L+ NLL  T   +     +  T L+     LT    D     LP L  L +S+
Sbjct: 31  KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDG---TLPVLGTLDLSH 86

Query: 67  NQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNS-TKLKLLYLSFNNLIGEIPQEI 125
           NQ +  +P        L+ + +SFN+ T  +P        +L+ LYL   N +  +P  +
Sbjct: 87  NQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLK-GNELKTLPPGL 143

Query: 126 -GSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEG 183
                 LE L +  NNL   +P  +   +  L TL L  N+L   +P      G   L  
Sbjct: 144 LTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKG--FFGSHLLPF 199

Query: 184 LILGLN 189
             L  N
Sbjct: 200 AFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 68.2 bits (167), Expect = 4e-13
 Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 10/161 (6%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV 64
               L  L L+   LT  +         +   LD S+N L  S P  + + LP L  L V
Sbjct: 53  PYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDV 107

Query: 65  SYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDL-GNSTKLKLLYLSFNNLIGEIPQ 123
           S+N+        L    EL  + L  N+    +P  L   + KL+ L L+ NN + E+P 
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLA-NNNLTELPA 165

Query: 124 EI-GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNN 163
            +   L NL+ L + +N+L   IP   F    L    L  N
Sbjct: 166 GLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 49/187 (26%), Positives = 69/187 (36%), Gaps = 14/187 (7%)

Query: 83  LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLV 142
            + + LS N         L   T+L  L L     + ++    G+L  L  L +  N L 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLD-RAELTKLQ-VDGTLPVLGTLDLSHNQLQ 90

Query: 143 GFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNA 202
             +P     +  L  L +  N L+ +LP    L GL  L+ L L  N    ++P      
Sbjct: 91  S-LPLLGQTLPALTVLDVSFNRLT-SLPLG-ALRGLGELQELYLKGNELK-TLPPGLLTP 146

Query: 203 -SKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKV 261
             KL  L LA N+ + L    L  L NL+ L LQ N L +                 L  
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-------HLLPF 199

Query: 262 IVLAENP 268
             L  NP
Sbjct: 200 AFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 52/201 (25%), Positives = 74/201 (36%), Gaps = 20/201 (9%)

Query: 171 SSKKLIGLP-----NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQ 225
             + L  LP     +   L L  N       +     ++L  L L     + L  +  G 
Sbjct: 18  DKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGT 75

Query: 226 LRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVE 285
           L  L  L L  N L S    L  L   L     L V+ ++ N +   LP         ++
Sbjct: 76  LPVLGTLDLSHNQLQS----LPLLGQTLPA---LTVLDVSFNRLT-SLPLGALRGLGELQ 127

Query: 286 EIYMYKCNIHGRIPKEI-GNLINLTKLSLGYNNLSGSLPI-TLGRLKKLQGLDLQNNKFE 343
           E+Y+    +   +P  +      L KLSL  NNL+  LP   L  L+ L  L LQ N   
Sbjct: 128 ELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

Query: 344 GPIPHEFCHFSRLYKFYLNRN 364
             IP  F     L   +L+ N
Sbjct: 186 T-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 303 GNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLN 362
           G L  L  L L +N L  SLP+    L  L  LD+  N+              L + YL 
Sbjct: 74  GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132

Query: 363 RNKLSGSIPS-CLGDLNSLRILSL 385
            N+L  ++P   L     L  LSL
Sbjct: 133 GNELK-TLPPGLLTPTPKLEKLSL 155

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 307 NLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKL 366
           + T L L  N L      TL    +L  L+L   +              L    L+ N+L
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQL 89

Query: 367 SGSIPSCLGDLNSLRILSL 385
             S+P     L +L +L +
Sbjct: 90  Q-SLPLLGQTLPALTVLDV 107

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.8 bits (176), Expect = 4e-14
 Identities = 43/181 (23%), Positives = 69/181 (38%), Gaps = 13/181 (7%)

Query: 15  NNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIP 74
           +   L   +P    +L S +  LD S+N+L+    +     L  L  L +S+N       
Sbjct: 26  SKQQLP-NVPQ---SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS 81

Query: 75  NNLWHCKELSRVSLSFNQFTGRIPRD-LGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLE 132
                   L  + LS N     +      +   L++L L  NN I  + +     +  L+
Sbjct: 82  EAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLY-NNHIVVVDRNAFEDMAQLQ 139

Query: 133 ILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSS---KKLIGLPNLEGLILGLN 189
            L + QN +  F  + I + + L  L LL+  LS N         L  LP      L L+
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLD--LSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

Query: 190 N 190
           N
Sbjct: 198 N 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 20/182 (10%)

Query: 171 SSKKLIGLP-----NLEGLILGLNNFSGSIPSFFF-NASKLYYLELAYNSFSGLIPKALG 224
           S ++L  +P         L L  NN S     +     + L+ L L++N  + +  +A  
Sbjct: 26  SKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV 85

Query: 225 QLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSV 284
            + NL  L L SN+L +       LFS L     L+V++L  N +  V  ++  +++  +
Sbjct: 86  PVPNLRYLDLSSNHLHTLDEF---LFSDLQA---LEVLLLYNNHIVVVDRNAFEDMA-QL 138

Query: 285 EEIYMYKCNIHGRIPKEI----GNLINLTKLSLGYNNLSGSLPITLGRLKKL--QGLDLQ 338
           +++Y+ +  I  R P E+      L  L  L L  N L       L +L      GL L 
Sbjct: 139 QKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

Query: 339 NN 340
           NN
Sbjct: 198 NN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 11/163 (6%)

Query: 227 RNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEE 286
                L L  N L+   +E     + L N   L  ++L+ N ++ +   +   +  ++  
Sbjct: 39  SYTALLDLSHNNLSRLRAEWT--PTRLTN---LHSLLLSHNHLNFISSEAFVPV-PNLRY 92

Query: 287 IYMYKCNIHGRIPKEI-GNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGP 345
           + +   ++H  + + +  +L  L  L L  N++          + +LQ L L  N+    
Sbjct: 93  LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF 151

Query: 346 IPHEFCHFSRLYK---FYLNRNKLSGSIPSCLGDLNSLRILSL 385
                   ++L K     L+ NKL     + L  L +     L
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 9/117 (7%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLY 63
            +  L  L L++N L  T+   +F +L ++   L   NN +      +  E + +L+ LY
Sbjct: 86  PVPNLRYLDLSSNHLH-TLDEFLFSDLQAL-EVLLLYNNHIV-VVDRNAFEDMAQLQKLY 142

Query: 64  VSYNQFKGPIPN----NLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNN 116
           +S NQ     P     +     +L  + LS N+       DL          L  +N
Sbjct: 143 LSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.7 bits (173), Expect = 6e-14
 Identities = 43/229 (18%), Positives = 65/229 (28%), Gaps = 19/229 (8%)

Query: 1   MELGNLAELEVLVLNNNLLTGTIPASIFNLSSIS-TGLDFSNNSLTG---SFPDDMCEGL 56
           + +  ++ L+ L L N  +TGT P  +   +      L+  N S         +      
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 57  PRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRI-------PRDLGNSTKLKL 109
           P LK L ++           +     LS + LS N   G         P        L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 110 LYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGN 168
                    G       +   L+ L +  N+L            S L +L+L    L   
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268

Query: 169 LPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSG 217
                       L  L L  N      P       ++  L L  N F  
Sbjct: 269 PKGL-----PAKLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.7 bits (173), Expect = 7e-14
 Identities = 43/271 (15%), Positives = 90/271 (33%), Gaps = 16/271 (5%)

Query: 83  LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLV 142
           L RV    +           +  +L +      + I      +  +  L+ L ++   + 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 143 GFIPDTIFN--MSTLKTLSLLNNTLSGNLPSSKKLIGL--PNLEGLILGLNNFSGSIPSF 198
           G  P  +       L  L+L N + +       +L     P L+ L +   +        
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 199 FFNASKLYYLELAYNSFSGLIPKA----LGQLRNLERLGLQSNYLTSSTSELMSLFSALV 254
                 L  L+L+ N   G           +   L+ L L++  + + +    +L +   
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA--- 225

Query: 255 NCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLG 314
               L+ + L+ N +     +   +    +  + +    +  ++PK +     L+ L L 
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLS 282

Query: 315 YNNLSGSLPITLGRLKKLQGLDLQNNKFEGP 345
           YN L    P     L ++  L L+ N F   
Sbjct: 283 YNRLD-RNPSPDE-LPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.4 bits (167), Expect = 4e-13
 Identities = 44/280 (15%), Positives = 77/280 (27%), Gaps = 25/280 (8%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCE--GLPRLK 60
            G    LE L+   +        +    S     L      +            G+  L+
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 61  GLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNS------TKLKLLYLSF 114
            L +   +  G  P  L          L+    +                  LK+L ++ 
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 115 NNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTI----FNMSTLKTLSLLNNTLSGNLP 170
            + +    +++     L  L +  N  +G              TL+ L+L N  +     
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 171 SSKKLI-GLPNLEGLILGLNNFSGSIP-SFFFNASKLYYLELAYNSFSGLIPKALGQLRN 228
               L      L+GL L  N+   +         S+L  L L++     +     G    
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLPAK 275

Query: 229 LERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENP 268
           L  L L  N L            +      +  + L  NP
Sbjct: 276 LSVLDLSYNRLDR--------NPSPDELPQVGNLSLKGNP 307

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.9 bits (145), Expect = 3e-10
 Identities = 58/277 (20%), Positives = 94/277 (33%), Gaps = 28/277 (10%)

Query: 114 FNNLIGEIPQEIGSLRNLEI-LRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGN-LPS 171
           FN L     +  G  R+LE  L+             I    +LK L++    +    L  
Sbjct: 28  FNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFG 87

Query: 172 SKKLIGLPNLEGLILGLNNFSGSIPS--FFFNASKLYYLELAYNSFSGLIPKALGQLRNL 229
           + +++G+  L+ L L     +G+ P          L  L L   S++      L +L+  
Sbjct: 88  ALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQW 146

Query: 230 ERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYM 289
            + GL+   +  + S   S    +    +L  + L++NP  G                  
Sbjct: 147 LKPGLKVLSIAQAHSLNFS-CEQVRVFPALSTLDLSDNPELGERGL-------------- 191

Query: 290 YKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHE 349
               I    P +   L  L   + G    SG          +LQGLDL +N         
Sbjct: 192 ----ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247

Query: 350 FC-HFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
            C   S+L    L+   L   +P  L     L +L L
Sbjct: 248 SCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDL 281

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 53/239 (22%), Positives = 90/239 (37%), Gaps = 22/239 (9%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
              LA    +    + +T T+  +  +L  I T L      +T     +  + L  L GL
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQA--DLDGI-TTLSAFGTGVTTI---EGVQYLNNLIGL 68

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
            +  NQ     P  L +  +++ + LS N         +     +K L L+   +    P
Sbjct: 69  ELKDNQITDLAP--LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 123 QEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLE 182
             +  L NL++L +D N +    P  +  ++ L+ LS+ N  +S        L  L  L 
Sbjct: 125 --LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS----DLTPLANLSKLT 176

Query: 183 GLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241
            L    N  S    S   +   L  + L  N  S + P  L    NL  + L +  +T+
Sbjct: 177 TLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.9 bits (161), Expect = 3e-12
 Identities = 43/261 (16%), Positives = 90/261 (34%), Gaps = 27/261 (10%)

Query: 81  KELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNN 140
               +++   +  T  +     +   +  L       +  I   +  L NL  L +  N 
Sbjct: 19  ANAIKIAAGKSNVTDTVT--QADLDGITTLSAF-GTGVTTIE-GVQYLNNLIGLELKDNQ 74

Query: 141 LVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFF 200
           +    P  + N++ +  L L  N L     +   + GL +++ L L     +   P    
Sbjct: 75  ITDLAP--LKNLTKITELELSGNPLK----NVSAIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 201 NASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLK 260
             S L  L L  N  + + P  L  L NL+ L + +  ++          + L N   L 
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD--------LTPLANLSKLT 176

Query: 261 VIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSG 320
            +   +N +  +  S + +L  ++ E+++    I       + N  NL  ++L    ++ 
Sbjct: 177 TLKADDNKISDI--SPLASLP-NLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTITN 231

Query: 321 SLPITLGRLKKLQGLDLQNNK 341
                   L     +   +  
Sbjct: 232 QPVFYNNNLVVPNVVKGPSGA 252

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 51/235 (21%), Positives = 91/235 (38%), Gaps = 27/235 (11%)

Query: 151 NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLEL 210
            ++    ++   + ++  +        L  +  L       + +I       + L  LEL
Sbjct: 17  ALANAIKIAAGKSNVTDTVT----QADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLEL 70

Query: 211 AYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVD 270
             N  + L P  L  L  +  L L  N L +         SA+   +S+K + L    + 
Sbjct: 71  KDNQITDLAP--LKNLTKITELELSGNPLKN--------VSAIAGLQSIKTLDLTSTQIT 120

Query: 271 GVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLK 330
            V  + +  LS +++ +Y+    I       +  L NL  LS+G   +S   P  L  L 
Sbjct: 121 DV--TPLAGLS-NLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP--LANLS 173

Query: 331 KLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           KL  L   +NK     P        L + +L  N++S   P  L + ++L I++L
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 41/186 (22%), Positives = 66/186 (35%), Gaps = 36/186 (19%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
            +  L  ++ L L +  +T   P                              GL  L+ 
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTP----------------------------LAGLSNLQV 133

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           LY+  NQ     P  L     L  +S+   Q +   P  L N +KL  L    +N I +I
Sbjct: 134 LYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD-DNKISDI 188

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
              + SL NL  + +  N +    P  + N S L  ++L N T++         + +PN+
Sbjct: 189 S-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNV 245

Query: 182 EGLILG 187
                G
Sbjct: 246 VKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 17/172 (9%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
           L  L+ L+VL L+ N +T   P  +  L+++   L   N  ++   P      L +L  L
Sbjct: 125 LAGLSNLQVLYLDLNQITNISP--LAGLTNLQY-LSIGNAQVSDLTP---LANLSKLTTL 178

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
               N+     P  L     L  V L  NQ +   P  L N++ L ++ L+   +  +  
Sbjct: 179 KADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234

Query: 123 QEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKK 174
               +L    +++      +   P TI +       +  +  L+ NL S   
Sbjct: 235 FYNNNLVVPNVVKGPSGAPI--APATISD-----NGTYASPNLTWNLTSFIN 279

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 10/163 (6%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV 64
            L +L +L LN+N L  T+PA IF        L  ++N L  + P  + + L  L  L +
Sbjct: 59  RLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRL 116

Query: 65  SYNQFKGPIPNNLWHC-KELSRVSLSFNQFTGRIPRDLGNS-TKLKLLYLSFNNLIGEIP 122
             NQ K  +P  ++    +L+ +SL +N+    +P+ + +  T LK L L  NN +  +P
Sbjct: 117 DRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLY-NNQLKRVP 173

Query: 123 QEI-GSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNN 163
           +     L  L+ L++D N L   +P+  F ++  LK L L  N
Sbjct: 174 EGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 11/181 (6%)

Query: 207 YLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAE 266
            L+L  N  S L  KA  +L  L  L L  N L +  +    +F  L N   L+ + + +
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA---GIFKELKN---LETLWVTD 94

Query: 267 NPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI-GNLINLTKLSLGYNNLSGSLPIT 325
           N +   LP  + +  V++ E+ + +  +   +P  +  +L  LT LSLGYN L  SLP  
Sbjct: 95  NKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKG 151

Query: 326 L-GRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILS 384
           +  +L  L+ L L NN+ +      F   + L    L+ N+L          L  L++L 
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

Query: 385 L 385
           L
Sbjct: 212 L 212

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 16/203 (7%)

Query: 40  SNNSLTGSFPDDMCEGLP-RLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIP 98
           S+  LT + P      +P   K L +  N+             +L  + L+ N+    +P
Sbjct: 24  SSKKLT-AIP----SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LP 77

Query: 99  RDL-GNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLVGFIPDTIF-NMSTL 155
             +      L+ L+++ +N +  +P  +   L NL  LR+D+N L   +P  +F +++ L
Sbjct: 78  AGIFKELKNLETLWVT-DNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKL 135

Query: 156 KTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFF-NASKLYYLELAYNS 214
             LSL  N L  +LP       L +L+ L L  N     +P   F   ++L  L+L  N 
Sbjct: 136 TYLSLGYNELQ-SLPKG-VFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQ 192

Query: 215 FSGLIPKALGQLRNLERLGLQSN 237
              +   A   L  L+ L LQ N
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 52/213 (24%), Positives = 72/213 (33%), Gaps = 37/213 (17%)

Query: 130 NLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLN 189
           + + L +  N L          ++ L+ L L +N L   LP+      L NLE L +  N
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAG-IFKELKNLETLWVTDN 95

Query: 190 NFSGSIPS-FFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMS 248
               ++P   F     L  L L  N    L P+    L  L  L L  N L S       
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK---G 151

Query: 249 LFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI-GNLIN 307
           +F  L +   LK + L  N +                           R+P+     L  
Sbjct: 152 VFDKLTS---LKELRLYNNQL--------------------------KRVPEGAFDKLTE 182

Query: 308 LTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNN 340
           L  L L  N L          L+KL+ L LQ N
Sbjct: 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.3 bits (165), Expect = 5e-13
 Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 6/160 (3%)

Query: 82  ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNN 140
               + L              N   +  +Y+S +  + ++      +L  +  + I    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 141 LVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFF 199
            + +I       +  LK L + N  L    P   K+        L +  N +  SIP   
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 200 FN--ASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSN 237
           F    ++   L+L  N F+ +   A      L+ + L  N
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKN 189

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 42/212 (19%), Positives = 77/212 (36%), Gaps = 16/212 (7%)

Query: 35  TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNL-WHCKELSRVSLSFNQF 93
             L      L  + P      LP +  +YVS +     + ++  ++  +++ + +   + 
Sbjct: 34  QTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 94  TGRIPRD-LGNSTKLKLLYLSFNNLIGEIPQE--IGSLRNLEILRIDQNNLVGFIPDTIF 150
              I  D L     LK L +  N  +   P    + S     IL I  N  +  IP   F
Sbjct: 93  LTYIDPDALKELPLLKFLGIF-NTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 151 N--MSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFN--ASKLY 206
               +   TL L NN  + ++           L+ + L  N +   I    F    S   
Sbjct: 152 QGLCNETLTLKLYNNGFT-SVQGY--AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208

Query: 207 YLELAYNSFSGLIPKALGQLRNLERLGLQSNY 238
            L+++  S + L  K L    +L+ L  ++ +
Sbjct: 209 LLDVSQTSVTALPSKGL---EHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 38/194 (19%), Positives = 76/194 (39%), Gaps = 14/194 (7%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLY 63
           NL  +  + ++ ++    + +  F NLS ++  ++  N         D  + LP LK L 
Sbjct: 53  NLPNISRIYVSIDVTLQQLESHSFYNLSKVTH-IEIRNTRNLTYIDPDALKELPLLKFLG 111

Query: 64  VSYNQFKG-PIPNNLWHCKELSRVSLSFNQFTGRIPRDL--GNSTKLKLLYLSFNNLIGE 120
           +     K  P    ++       + ++ N +   IP +   G   +   L L  NN    
Sbjct: 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY-NNGFTS 170

Query: 121 IPQEIGSLRNLEILRIDQNNLVGFIPDTIFN--MSTLKTLSLLNNTLSGNLPSSKKLIGL 178
           +     +   L+ + +++N  +  I    F    S    L +   +++  LPS     GL
Sbjct: 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK----GL 225

Query: 179 PNLEGLILGLNNFS 192
            +L+ LI   N ++
Sbjct: 226 EHLKELIA-RNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 34/221 (15%), Positives = 74/221 (33%), Gaps = 37/221 (16%)

Query: 128 LRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILG 187
             + + L++ + +L   IP   F+                          LPN+  + + 
Sbjct: 30  PPSTQTLKLIETHLR-TIPSHAFS-------------------------NLPNISRIYVS 63

Query: 188 LNNFSGSIPSF-FFNASKLYYLELAYN-SFSGLIPKALGQLRNLERLGLQSNYLTSSTSE 245
           ++     + S  F+N SK+ ++E+    + + + P AL +L  L+ LG+ +  L      
Sbjct: 64  IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM---- 119

Query: 246 LMSLFSALVNCKSLKVIVLAENPVDGVLPS-SIGNLSVSVEEIYMYKCNIHGRIPKEIGN 304
                + + +     ++ + +NP    +P  +   L      + +Y       +     N
Sbjct: 120 -FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN 177

Query: 305 LINLTKLSLGYNNLSGSLPITL--GRLKKLQGLDLQNNKFE 343
              L  + L  N     +      G       LD+      
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 17/189 (8%)

Query: 205 LYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFS-ALVNCKSLKVIV 263
              L+L       +   A   L N+ R+ +  +        L  L S +  N   +  I 
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSID------VTLQQLESHSFYNLSKVTHIE 86

Query: 264 LAENPVDGVLPSSI-GNLSVSVEEIYMYKCNIHGRIPKE--IGNLINLTKLSLGYNNLSG 320
           +        +       L   ++ + ++   +    P    + +      L +  N    
Sbjct: 87  IRNTRNLTYIDPDALKELP-LLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 321 SLPITL--GRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCL--GD 376
           S+P+    G   +   L L NN F   +     + ++L   YLN+NK    I      G 
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203

Query: 377 LNSLRILSL 385
            +   +L +
Sbjct: 204 YSGPSLLDV 212

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 4/131 (3%)

Query: 35  TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFT 94
             L  +NN  T      + + LP+L+ +  S N+              ++ + L+ N+  
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 95  GRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLVGFIPDTIF-NM 152
               +       LK L L  +N I  +  +    L ++ +L +  N +   +    F  +
Sbjct: 95  NVQHKMFKGLESLKTLMLR-SNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTL 152

Query: 153 STLKTLSLLNN 163
            +L TL+LL N
Sbjct: 153 HSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 32/177 (18%), Positives = 56/177 (31%), Gaps = 39/177 (22%)

Query: 171 SSKKL----IGLP-NLEGLILGLNNFSGSIPS-FFFNASKLYYLELAYNSFSGLIPKALG 224
           S++KL      +P     L L  N F+    +  F    +L  +  + N  + +   A  
Sbjct: 19  SNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE 78

Query: 225 QLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSV 284
               +  + L SN L +       +F  L + K+L                         
Sbjct: 79  GASGVNEILLTSNRLENVQH---KMFKGLESLKTL------------------------- 110

Query: 285 EEIYMYKCNIHGRIPKEI-GNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNN 340
               +    I   +  +    L ++  LSL  N ++   P     L  L  L+L  N
Sbjct: 111 ---MLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 33/142 (23%), Positives = 48/142 (33%), Gaps = 21/142 (14%)

Query: 145 IPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASK 204
           IP+ I        L L NN  +  L ++     LP L  +    N  +      F  AS 
Sbjct: 26  IPEHIP--QYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 205 LYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS-------STSELMSLF------- 250
           +  + L  N    +  K    L +L+ L L+SN +T          S +  L        
Sbjct: 83  VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142

Query: 251 ----SALVNCKSLKVIVLAENP 268
                A     SL  + L  NP
Sbjct: 143 TVAPGAFDTLHSLSTLNLLANP 164

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 304 NLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNR 363
            L  L K++   N ++            +  + L +N+ E      F     L    L  
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114

Query: 364 NKLSGSIPSCLGD-LNSLRILSL 385
           N+++  + +     L+S+R+LSL
Sbjct: 115 NRIT-CVGNDSFIGLSSVRLLSL 136

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 85  RVSLSFNQFTGRIPRDL-GNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNLV 142
            + L+ N+FT      +     +L+ +  S NN I +I +        +  + +  N L 
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFS-NNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 143 GFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFN 201
             +   +F  + +LKTL L +N ++  + +    IGL ++  L L  N  + ++    F+
Sbjct: 95  N-VQHKMFKGLESLKTLMLRSNRIT-CVGNDS-FIGLSSVRLLSLYDNQIT-TVAPGAFD 150

Query: 202 A-SKLYYLELAYNSF 215
               L  L L  N F
Sbjct: 151 TLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 36/160 (22%)

Query: 208 LELAYNSFSGLIPKAL-GQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAE 266
           L L  N F+ L    +  +L  L ++   +N +T         F        +  I+L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE---GAFEGASG---VNEILLTS 90

Query: 267 NPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPI-T 325
           N ++  +   +                           L +L  L L  N ++  +   +
Sbjct: 91  NRLEN-VQHKM------------------------FKGLESLKTLMLRSNRIT-CVGNDS 124

Query: 326 LGRLKKLQGLDLQNNKFEGPIPHE-FCHFSRLYKFYLNRN 364
              L  ++ L L +N+    +    F     L    L  N
Sbjct: 125 FIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 21/92 (22%)

Query: 6   LAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV 64
            + +  ++L +N L   +   +F  L S+   L   +N +T    +D   GL  ++ L +
Sbjct: 80  ASGVNEILLTSNRLE-NVQHKMFKGLESL-KTLMLRSNRIT-CVGNDSFIGLSSVRLLSL 136

Query: 65  SYNQFKGPIP----------------NNLWHC 80
             NQ    +                  N ++C
Sbjct: 137 YDNQIT-TVAPGAFDTLHSLSTLNLLANPFNC 167

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.0 bits (151), Expect = 8e-11
 Identities = 54/313 (17%), Positives = 105/313 (33%), Gaps = 54/313 (17%)

Query: 59  LKGLYVSYNQFKG----PIPNNLWHCKELSRVSLSFNQFTGR----IPRDLGNSTKLKLL 110
           ++G  +  +         +   L     +  + LS N         +  ++ +   L++ 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 111 YLSFN---NLIGEIPQEIGSL-------RNLEILRIDQNNL----VGFIPDTIFNMSTLK 156
             S      +  EIP+ +  L         L  +R+  N         + D +   + L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 157 TLSLLNNTLS-----------GNLPSSKKLIGLPNLEGLILGLNNFSG----SIPSFFFN 201
            L L NN L              L  +KK    P L  +I G N             F +
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 202 ASKLYYLELAYNSF-----SGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNC 256
              L+ +++  N         L+ + L   + L+ L LQ N  T   S   +L  AL + 
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS--ALAIALKSW 243

Query: 257 KSLKVIVLAENPV--DGV--LPSSIGNLS-VSVEEIYMYKCNIHGRIPKEIG-----NLI 306
            +L+ + L +  +   G   +  +   L  + ++ + +    I     + +       + 
Sbjct: 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303

Query: 307 NLTKLSLGYNNLS 319
           +L  L L  N  S
Sbjct: 304 DLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 40/280 (14%), Positives = 83/280 (29%), Gaps = 64/280 (22%)

Query: 101 LGNSTKLKLLYLSFNNL----IGEIPQEIGSLRNLEILRIDQNNL----VGFIPDTIFNM 152
           +   + ++   L  + +       +   +    +++ + +  N +      ++ + I + 
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 153 STLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAY 212
             L+         S       K      L  L+  L               KL+ + L+ 
Sbjct: 60  KDLEIAEF-----SDIFTGRVKDEIPEALRLLLQALLK-----------CPKLHTVRLSD 103

Query: 213 NSFSG----LIPKALGQLRNLERLGLQSNYLTSSTSELMS-------LFSALVNCKSLKV 261
           N+F       +   L +   LE L L +N L       ++       +     N   L+ 
Sbjct: 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS 163

Query: 262 IVLAENPVDGVLPSSIGNLSV-----------SVEEIYMYKCNIHGR-IPKEIGNLI--- 306
           I+   N         + N S+            +  + M +  I    I   +   +   
Sbjct: 164 IICGRN--------RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215

Query: 307 -NLTKLSLGYNNLSG----SLPITLGRLKKLQGLDLQNNK 341
             L  L L  N  +     +L I L     L+ L L +  
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 48/270 (17%), Positives = 84/270 (31%), Gaps = 49/270 (18%)

Query: 76  NLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILR 135
           +     E  + +L     T  +         +  +  + ++ I  + Q I  L N+  L 
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD-IKSV-QGIQYLPNVTKLF 74

Query: 136 IDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI 195
           ++ N L    P  + N+  L  L L  N +         L  L  L+ L L  N  S  I
Sbjct: 75  LNGNKLTDIKP--LANLKNLGWLFLDENKVK----DLSSLKDLKKLKSLSLEHNGIS-DI 127

Query: 196 PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVN 255
            +   +  +L  L L  N  + +    L +L  L+ L L+ N ++            L  
Sbjct: 128 -NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD--------IVPLAG 176

Query: 256 CKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGY 315
              L+ + L++N +     S +  L+                       L NL  L L  
Sbjct: 177 LTKLQNLYLSKNHI-----SDLRALA----------------------GLKNLDVLELFS 209

Query: 316 NNLSGSLPITLGRLKKLQGLDLQNNKFEGP 345
                        L     +   +     P
Sbjct: 210 QECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 51/266 (19%), Positives = 83/266 (31%), Gaps = 49/266 (18%)

Query: 101 LGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSL 160
                +     L   ++   + Q    L +++ +  + +++       I  +  +  L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFL 75

Query: 161 LNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIP 220
             N     L   K L  L NL  L L  N     + S   +  KL  L L +N  S +  
Sbjct: 76  NGN----KLTDIKPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGISDING 129

Query: 221 KALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNL 280
             L  L  LE L L +N +T          + L     L  + L +N +     S I  L
Sbjct: 130 --LVHLPQLESLYLGNNKITD--------ITVLSRLTKLDTLSLEDNQI-----SDIVPL 174

Query: 281 SVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNN 340
           +                       L  L  L L  N++S      L  LK L  L+L + 
Sbjct: 175 A----------------------GLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQ 210

Query: 341 KFEGPIPHEFCHFSRLYKFYLNRNKL 366
           +      +   +             L
Sbjct: 211 ECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 52/239 (21%), Positives = 87/239 (36%), Gaps = 20/239 (8%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
               AE     L    +T  +  +   L+SI   +  +N+ +         + LP +  L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQN--ELNSI-DQIIANNSDIKSVQG---IQYLPNVTKL 73

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
           +++ N+        L + K L  + L  N+    +   L +  KLK L L  N  I +I 
Sbjct: 74  FLNGNKLTD--IKPLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNG-ISDIN 128

Query: 123 QEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLE 182
             +  L  LE L +  N +       +  ++ L TLSL +N +S ++     L GL  L+
Sbjct: 129 -GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP---LAGLTKLQ 181

Query: 183 GLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241
            L L  N+ S  +         L  LEL               L     +      L +
Sbjct: 182 NLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.5 bits (146), Expect = 3e-10
 Identities = 42/190 (22%), Positives = 67/190 (35%), Gaps = 14/190 (7%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
              L ELE       L    +  ++  L      L + +  L    P        R   L
Sbjct: 371 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST-LKAVDP-------MRAAYL 422

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
               ++F            ++  + L+    T  +   L     +  L LS N L   +P
Sbjct: 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALP 479

Query: 123 QEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLE 182
             + +LR LE+L+   N L     D + N+  L+ L L NN L     + + L+  P L 
Sbjct: 480 PALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLV 536

Query: 183 GLILGLNNFS 192
            L L  N+  
Sbjct: 537 LLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.4 bits (143), Expect = 8e-10
 Identities = 50/244 (20%), Positives = 79/244 (32%), Gaps = 43/244 (17%)

Query: 98  PRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKT 157
            RD     +L    LS       +  E+ S + L+ L  +    +  I   I  M  L  
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTI---ILLMRALDP 397

Query: 158 LSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSG 217
           L     TL     + K +  +     L    + F           + +  L LA+   + 
Sbjct: 398 LLYEKETLQ-YFSTLKAVDPM-RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV 455

Query: 218 LIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSI 277
           L    L QL  +  L L  N L +       L  AL   + L+V+  ++N         +
Sbjct: 456 L--CHLEQLLLVTHLDLSHNRLRA-------LPPALAALRCLEVLQASDNA--------L 498

Query: 278 GNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSG-SLPITLGRLKKLQGLD 336
            N+                     + NL  L +L L  N L   +    L    +L  L+
Sbjct: 499 ENVD-------------------GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539

Query: 337 LQNN 340
           LQ N
Sbjct: 540 LQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 2e-09
 Identities = 28/187 (14%), Positives = 70/187 (37%), Gaps = 9/187 (4%)

Query: 1   MELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLK 60
             +  +  L+ L+     L     +++  +  +         S        +      ++
Sbjct: 387 TIILLMRALDPLLYEKETLQYF--STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVR 444

Query: 61  GLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGE 120
            L++++      +  +L     ++ + LS N+    +P  L     L++L  S +N +  
Sbjct: 445 VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQAS-DNALEN 500

Query: 121 IPQEIGSLRNLEILRIDQNNLVGF-IPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIG-L 178
           +   + +L  L+ L +  N L        + +   L  L+L  N+L       ++L   L
Sbjct: 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559

Query: 179 PNLEGLI 185
           P++  ++
Sbjct: 560 PSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 1e-07
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 291 KCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEF 350
                  +   +  L+ +T L L +N L  +LP  L  L+ L+ L   +N  E  +    
Sbjct: 449 AHKDLTVLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GV 504

Query: 351 CHFSRLYKFYLNRNKLSG-SIPSCLGDLNSLRILSL 385
            +  RL +  L  N+L   +    L     L +L+L
Sbjct: 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 28/158 (17%)

Query: 7   AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSY 66
             +  + L  N +   IP   F+       +D SNN ++     D  +GL  L  L +  
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89

Query: 67  NQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI- 125
           N+    +P                                L+LL L+ N +   +  +  
Sbjct: 90  NKITE-LP-----------------------KSLFEGLFSLQLLLLNANKI-NCLRVDAF 124

Query: 126 GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNN 163
             L NL +L +  N L      T   +  ++T+ L  N
Sbjct: 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 43/176 (24%), Positives = 63/176 (35%), Gaps = 38/176 (21%)

Query: 171 SSKKL----IGLP-NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQ 225
             K L      LP  +  + L  N      P  F    KL  ++L+ N  S L P A   
Sbjct: 19  RGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78

Query: 226 LRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVE 285
           LR+L  L L  N +T       SLF  L +   L++++L  N            ++    
Sbjct: 79  LRSLNSLVLYGNKITELPK---SLFEGLFS---LQLLLLNAN-----------KIN---- 117

Query: 286 EIYMYKCNIHGRIPKEI-GNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNN 340
                       +  +   +L NL  LSL  N L      T   L+ +Q + L  N
Sbjct: 118 -----------CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 31/159 (19%), Positives = 52/159 (32%), Gaps = 35/159 (22%)

Query: 208 LELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAEN 267
           + L  N+   + P A    + L R+ L +N ++         F  L +  SL        
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP---DAFQGLRSLNSL-------- 85

Query: 268 PVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI-GNLINLTKLSLGYNNLSGSLPI-T 325
                                +Y   I   +PK +   L +L  L L  N ++  L +  
Sbjct: 86  --------------------VLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDA 123

Query: 326 LGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRN 364
              L  L  L L +NK +      F     +   +L +N
Sbjct: 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 32/138 (23%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIFN-LSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLY 63
              +L  + L+NN ++  +    F  L S+++ L    N +T   P  + EGL  L+ L 
Sbjct: 54  PYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNS-LVLYGNKIT-ELPKSLFEGLFSLQLLL 110

Query: 64  VSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNS-TKLKLLYLSFNNLIGEIP 122
           ++ N+                            +  D       L LL L  N L   I 
Sbjct: 111 LNANKIN-------------------------CLRVDAFQDLHNLNLLSLYDNKL-QTIA 144

Query: 123 QEI-GSLRNLEILRIDQN 139
           +     LR ++ + + QN
Sbjct: 145 KGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 8/133 (6%)

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDL-GNSTKLKLLYLSFNNLIGE 120
           + +  N  K   P      K+L R+ LS NQ +  +  D       L  L L  N +  E
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI-TE 94

Query: 121 IPQEI-GSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGL 178
           +P+ +   L +L++L ++ N +   +    F ++  L  LSL +N L   +        L
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQ-TIAKG-TFSPL 151

Query: 179 PNLEGLILGLNNF 191
             ++ + L  N F
Sbjct: 152 RAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 305 LINLTKLSLGYNNLSGSLPI-TLGRLKKLQGLDLQNNKFEGPIPHE-FCHFSRLYKFYLN 362
           L +L  L L  N ++  LP      L  LQ L L  NK    +  + F     L    L 
Sbjct: 79  LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLY 136

Query: 363 RNKLSGSIPSCLGDLNSLRILSL 385
            NKL          L +++ + L
Sbjct: 137 DNKLQTIAKGTFSPLRAIQTMHL 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 6   LAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV 64
           L  L  LVL  N +T  +P S+F  L S+   L  + N +      D  + L  L  L +
Sbjct: 79  LRSLNSLVLYGNKIT-ELPKSLFEGLFSL-QLLLLNANKIN-CLRVDAFQDLHNLNLLSL 135

Query: 65  SYNQFKGPIPNNLWHCKELSRVSLSFNQF 93
             N+ +          + +  + L+ N F
Sbjct: 136 YDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 307 NLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKL 366
            +T++ L  N +    P      KKL+ +DL NN+     P  F     L    L  NK+
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 367 SGSIPSCLGD-LNSLRILSL 385
           +  +P  L + L SL++L L
Sbjct: 93  T-ELPKSLFEGLFSLQLLLL 111

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.2 bits (144), Expect = 7e-10
 Identities = 59/377 (15%), Positives = 118/377 (31%), Gaps = 69/377 (18%)

Query: 35  TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFK----GPIPNNLWHCKELSRVSLSF 90
             LD     L+ +   ++   L + + + +            I + L     L+ ++L  
Sbjct: 6   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 65

Query: 91  NQFTGRIPRDLG-----NSTKLKLLYLSFNNL----IGEIPQEIGSLRNLEILRIDQNNL 141
           N+        +       S K++ L L    L     G +   + +L  L+ L +  N L
Sbjct: 66  NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125

Query: 142 -----VGFIPDTIFNMSTLKTLSLLNNTLS--GNLPSSKKLIGLPNLEGLILGLNNFSGS 194
                       +     L+ L L   +LS     P +  L   P+ + L +  N+ + +
Sbjct: 126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185

Query: 195 -----IPSFFFNASKLYYLELAYNSFS----GLIPKALGQLRNLERLGLQSNYLTSSTSE 245
                      +  +L  L+L     +      +   +    +L  L L SN L      
Sbjct: 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245

Query: 246 LMS---------------------------LFSALVNCKSLKVIVLAENPV--DGV--LP 274
            +                            L   L   +SLK + LA N +  +G   L 
Sbjct: 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC 305

Query: 275 SSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLI----NLTKLSLGYNNLSGSLPITLGRL- 329
            ++      +E +++  C+          +++     L +L +  N L  +    L +  
Sbjct: 306 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365

Query: 330 ----KKLQGLDLQNNKF 342
                 L+ L L +   
Sbjct: 366 GQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 75/439 (17%), Positives = 148/439 (33%), Gaps = 58/439 (13%)

Query: 3   LGNLAELEVLVLNNNLLTGT---IPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGL--- 56
           L  L + +V+ L++  LT       +S   ++     L+  +N L       + +GL   
Sbjct: 24  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83

Query: 57  -PRLKGLYVSYNQFK----GPIPNNLWHCKELSRVSLSFNQFTGRIPRDLG-----NSTK 106
             +++ L +          G + + L     L  + LS N       + L         +
Sbjct: 84  SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143

Query: 107 LKLLYLSFNNLIGEIPQEIGSL----RNLEILRIDQNNL----VGFIPDTI-FNMSTLKT 157
           L+ L L + +L     + + S+     + + L +  N++    V  +   +  +   L+ 
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203

Query: 158 LSLLNNTLS--GNLPSSKKLIGLPNLEGLILGLNNFSGS-----IPSFFFNASKLYYLEL 210
           L L +  ++          +    +L  L LG N           P     +S+L  L +
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263

Query: 211 AYNSFS----GLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAE 266
                +    G + + L    +L+ L L  N L    + L+        C  L+ + +  
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC-QLESLWVKS 322

Query: 267 NPVDGVLPSSIGNL---SVSVEEIYMYKCNIHGRIPKEIGNLI-----NLTKLSLGYNNL 318
                   S   ++   +  + E+ +    +     +E+   +      L  L L   ++
Sbjct: 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

Query: 319 S----GSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHF-----SRLYKFYLNRNKLS-- 367
           S     SL  TL     L+ LDL NN        +           L +  L     S  
Sbjct: 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442

Query: 368 --GSIPSCLGDLNSLRILS 384
               + +   D  SLR++S
Sbjct: 443 MEDRLQALEKDKPSLRVIS 461

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 46/161 (28%), Positives = 66/161 (40%), Gaps = 30/161 (18%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV 64
            L +L  L L+ N L  T+ A +F+  +    L  +NN L  S P  + + L +L  LY+
Sbjct: 57  GLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYL 114

Query: 65  SYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQE 124
             NQ K                SL    F           TKLK L L+  N +  IP  
Sbjct: 115 GGNQLK----------------SLPSGVFDR--------LTKLKELRLN-TNQLQSIPAG 149

Query: 125 I-GSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNN 163
               L NL+ L +  N L   +P   F  +  L+T++L  N
Sbjct: 150 AFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.5 bits (134), Expect = 6e-09
 Identities = 50/201 (24%), Positives = 69/201 (34%), Gaps = 40/201 (19%)

Query: 171 SSKKLIGLP-----NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQ 225
             K L  +P     + E L L     +    + F   +KL +L L YN    L       
Sbjct: 22  QGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81

Query: 226 LRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVE 285
           L  L  LGL +N L S       +F  L     L  + L  N +   LPS + +      
Sbjct: 82  LTELGTLGLANNQLASLPL---GVFDHLTQ---LDKLYLGGNQLKS-LPSGVFD------ 128

Query: 286 EIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPI-TLGRLKKLQGLDLQNNKFEG 344
                              L  L +L L  N L  S+P     +L  LQ L L  N+ + 
Sbjct: 129 ------------------RLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS 169

Query: 345 PIPHE-FCHFSRLYKFYLNRN 364
            +PH  F    +L    L  N
Sbjct: 170 -VPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 49/163 (30%), Positives = 65/163 (39%), Gaps = 12/163 (7%)

Query: 110 LYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFN-MSTLKTLSLLNNTLSGN 168
           L L    L          L  L  L +D N L   +   +F+ ++ L TL L NN L+ +
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-S 97

Query: 169 LPSSKKLIGLPNLEGLILGLNNFSGSIPSFFF-NASKLYYLELAYNSFSGLIPKALGQLR 227
           LP       L  L+ L LG N    S+PS  F   +KL  L L  N    +   A  +L 
Sbjct: 98  LP-LGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155

Query: 228 NLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVD 270
           NL+ L L +N L S          A      L+ I L  N  D
Sbjct: 156 NLQTLSLSTNQLQSVPH------GAFDRLGKLQTITLFGNQFD 192

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 18/160 (11%)

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNS-TKLKLLYLSFNNLIGE 120
           L +                 +L+ ++L +NQ    +   + +  T+L  L L+ NN +  
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLA-NNQLAS 97

Query: 121 IPQEI-GSLRNLEILRIDQNNLVGFIPDTIFNMST-LKTLSLLNNTLSGNLPSSKKLIG- 177
           +P  +   L  L+ L +  N L   +P  +F+  T LK L L  N L  ++P+     G 
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPA-----GA 150

Query: 178 ---LPNLEGLILGLNNFSGSIP-SFFFNASKLYYLELAYN 213
              L NL+ L L  N    S+P   F    KL  + L  N
Sbjct: 151 FDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 8/160 (5%)

Query: 6   LAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVS 65
           L  +  L L  N L   I A      +  T L  + N L  S P+ + + L  LK L + 
Sbjct: 62  LPNVRYLALGGNKLH-DISA--LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLV 117

Query: 66  YNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI 125
            NQ +            L+ ++L+ NQ            T L  L LS+N L   +P+ +
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGV 176

Query: 126 -GSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNN 163
              L  L+ LR+ QN L   +PD +F  +++L+ + L +N
Sbjct: 177 FDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 47/207 (22%), Positives = 87/207 (42%), Gaps = 21/207 (10%)

Query: 171 SSKKLIGLPN---LEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLR 227
           S+      P+    E +   L   S +        + +  +    +    +  + +  L 
Sbjct: 6   STPIKQIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSV--QGIQYLP 63

Query: 228 NLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEI 287
           N+  L L  N L       +S    L N   L  ++L  N +   LP+ + +   +++E+
Sbjct: 64  NVRYLALGGNKLHD-----ISALKELTN---LTYLILTGNQLQS-LPNGVFDKLTNLKEL 114

Query: 288 YMYKCNIHGRIPKEIGN-LINLTKLSLGYNNLSGSLPITL-GRLKKLQGLDLQNNKFEGP 345
            + + N    +P  + + L NLT L+L +N L  SLP  +  +L  L  LDL  N+ +  
Sbjct: 115 VLVE-NQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS- 171

Query: 346 IPHE-FCHFSRLYKFYLNRNKLSGSIP 371
           +P   F   ++L    L +N+L  S+P
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQLK-SVP 197

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 17/192 (8%)

Query: 151 NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLEL 210
            ++++  +   N+ +  ++   + L   PN+  L LG N     I +     + L YL L
Sbjct: 39  ELNSIDQIIANNSDIK-SVQGIQYL---PNVRYLALGGNKLH-DISALK-ELTNLTYLIL 92

Query: 211 AYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVD 270
             N    L      +L NL+ L L  N L S       +F  L N   L  + LA N + 
Sbjct: 93  TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD---GVFDKLTN---LTYLNLAHNQLQ 146

Query: 271 GVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI-GNLINLTKLSLGYNNLSGSLPI-TLGR 328
             LP  + +   ++ E+ +   N    +P+ +   L  L  L L  N L  S+P     R
Sbjct: 147 -SLPKGVFDKLTNLTELDLS-YNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDR 203

Query: 329 LKKLQGLDLQNN 340
           L  LQ + L +N
Sbjct: 204 LTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 12/159 (7%)

Query: 85  RVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGF 144
           + +L     T  + ++      +  +  + +++       I  L N+  L +  N L   
Sbjct: 23  KANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDI 78

Query: 145 IPDTIF-NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNA- 202
              +    ++ L  L L  N L  +LP+      L NL+ L+L  N    S+P   F+  
Sbjct: 79  ---SALKELTNLTYLILTGNQLQ-SLPN-GVFDKLTNLKELVLVENQLQ-SLPDGVFDKL 132

Query: 203 SKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241
           + L YL LA+N    L      +L NL  L L  N L S
Sbjct: 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 5e-08
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 5/114 (4%)

Query: 79  HCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQE-IGSLRNLEILRID 137
                S +  + +         L  +  L  LY+     +  +    +  L  L  L I 
Sbjct: 6   CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 138 QNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNF 191
           ++ L    PD       L  L+L  N L  +L    K +   +L+ L+L  N  
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLS--WKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 2e-07
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 8/97 (8%)

Query: 173 KKLIGLPNLEGLILGLNNFSGSIPSF-FFNASKLYYLELAYNSFSGLIPKALGQLRNLER 231
             L G  NL  L +        +         +L  L +  +    + P A      L R
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 232 LGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENP 268
           L L  N L S + +       L    SL+ +VL+ NP
Sbjct: 85  LNLSFNALESLSWK---TVQGL----SLQELVLSGNP 114

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 1e-06
 Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 297 RIPKEIGNLINLTKLSLGYNNLSGSLP-ITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSR 355
                +    NLT+L +        L    L  L +L+ L +  +      P  F    R
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 356 LYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           L +  L+ N L  S+        SL+ L L
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVL 110

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 3e-06
 Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 10  EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQF 69
            +    +  L       +    +++  L   N             GL  L+ L +  +  
Sbjct: 12  GLRCTRDGALD--SLHHLPGAENLTE-LYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 70  KGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNL 117
           +   P+       LSR++LSFN     +         L+ L LS N L
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 3/94 (3%)

Query: 274 PSSIGNLSVSVEEIYMYKCNIHGRIPKE-IGNLINLTKLSLGYNNLSGSLPITLGRLKKL 332
              +     ++ E+Y+        +    +  L  L  L++  + L    P       +L
Sbjct: 24  LHHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 333 QGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKL 366
             L+L  N  E          S L +  L+ N L
Sbjct: 83  SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 18/93 (19%), Positives = 27/93 (29%), Gaps = 4/93 (4%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           L     L  L + N      +       L  +   L    + L      D     PRL  
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRN-LTIVKSGLR-FVAPDAFHFTPRLSR 84

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFT 94
           L +S+N  +  +         L  + LS N   
Sbjct: 85  LNLSFNALES-LSWKTVQGLSLQELVLSGNPLH 116

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 5/104 (4%)

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           LY+  NQF   +P  L + K L+ + LS N+ +    +   N T+L  L LS+N L   I
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RCI 93

Query: 122 PQEI-GSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNN 163
           P      L++L +L +  N++   +P+  F ++S L  L++  N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 20/121 (16%)

Query: 254 VNC--KSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKL 311
           V C  K LKV+           P  I      V E+Y+   N    +PKE+ N  +LT +
Sbjct: 15  VRCSNKGLKVL-----------PKGI---PRDVTELYLDG-NQFTLVPKELSNYKHLTLI 59

Query: 312 SLGYNNLSGSLPI-TLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSI 370
            L  N +S +L   +   + +L  L L  N+     P  F     L    L+ N +S  +
Sbjct: 60  DLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VV 117

Query: 371 P 371
           P
Sbjct: 118 P 118

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 24/123 (19%)

Query: 171 SSKKLIGLP-----NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQ 225
           S+K L  LP     ++  L L  N F+  +P    N   L  ++L+ N  S L  ++   
Sbjct: 18  SNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN 76

Query: 226 LRNLERLGLQSNYLTS-----------------STSELMSL-FSALVNCKSLKVIVLAEN 267
           +  L  L L  N L                     +++  +   A  +  +L  + +  N
Sbjct: 77  MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

Query: 268 PVD 270
           P+ 
Sbjct: 137 PLY 139

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 39/235 (16%), Positives = 75/235 (31%), Gaps = 25/235 (10%)

Query: 12  LVLNNNLLTGTIPASIFNLSSIS--TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQF 69
            +     +       +F    ++     +    S+T        + L  ++      +  
Sbjct: 2   SIQRPTPIN-----QVFPDPGLANAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNI 53

Query: 70  KGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLR 129
           +      +     L  + LS NQ +  +   L + TKL+ L ++  N +  +        
Sbjct: 54  Q--SLAGMQFFTNLKELHLSHNQIS-DLS-PLKDLTKLEELSVN-RNRLKNL--NGIPSA 106

Query: 130 NLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLN 189
            L  L +D N L       + ++  L+ LS+ NN L     S   L  L  LE L L  N
Sbjct: 107 CLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK----SIVMLGFLSKLEVLDLHGN 160

Query: 190 NFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTS 244
             + +         K+ +++L          K   +L     +        S   
Sbjct: 161 EIT-NT-GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYY 213

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 41/246 (16%), Positives = 74/246 (30%), Gaps = 48/246 (19%)

Query: 101 LGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSL 160
                      L   ++   + Q+   L  ++    D +N+       +   + LK L L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHL 70

Query: 161 LNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIP 220
            +N +S        L  L  LE L +  N    ++      ++ L  L L  N       
Sbjct: 71  SHNQIS----DLSPLKDLTKLEELSVNRNRLK-NLN--GIPSACLSRLFLDNNELRDTDS 123

Query: 221 KALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNL 280
             L  L+NLE L +++N L S           L     L+V+ L  N +     ++ G L
Sbjct: 124 --LIHLKNLEILSIRNNKLKS--------IVMLGFLSKLEVLDLHGNEI-----TNTGGL 168

Query: 281 SVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNN 340
           +                       L  +  + L               L     +   + 
Sbjct: 169 T----------------------RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDG 206

Query: 341 KFEGPI 346
           ++  P 
Sbjct: 207 RWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 39/189 (20%), Positives = 71/189 (37%), Gaps = 21/189 (11%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGL 62
              LA      L    +T  +      LS +    +  N+++         +    LK L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQK--ELSGV-QNFNGDNSNIQSLAG---MQFFTNLKEL 68

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSF-NNLIGEI 121
           ++S+NQ      + L    +L  +S++ N+       +L       L  L   NN + + 
Sbjct: 69  HLSHNQISD--LSPLKDLTKLEELSVNRNRLK-----NLNGIPSACLSRLFLDNNELRDT 121

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
              +  L+NLEIL I  N L   +   +  +S L+ L L  N ++    ++  L  L  +
Sbjct: 122 -DSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEIT----NTGGLTRLKKV 174

Query: 182 EGLILGLNN 190
             + L    
Sbjct: 175 NWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 35/185 (18%), Positives = 59/185 (31%), Gaps = 44/185 (23%)

Query: 201 NASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLK 260
             +      L   S + L+     +L  ++     ++ + S         + +    +LK
Sbjct: 17  GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQS--------LAGMQFFTNLK 66

Query: 261 VIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSG 320
            + L+ N +     S +  L                       +L  L +LS+  N L  
Sbjct: 67  ELHLSHNQI-----SDLSPLK----------------------DLTKLEELSVNRNRLKN 99

Query: 321 SLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSL 380
              +       L  L L NN+          H   L    +  NKL  SI   LG L+ L
Sbjct: 100 ---LNGIPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK-SI-VMLGFLSKL 152

Query: 381 RILSL 385
            +L L
Sbjct: 153 EVLDL 157

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 32/167 (19%), Positives = 56/167 (33%), Gaps = 15/167 (8%)

Query: 3   LGNLAELEVLVLNNNLLTGTIPASIFNLSSIS-TGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           L +L +LE L +N N L      ++  + S   + L   NN L  +        L  L+ 
Sbjct: 81  LKDLTKLEELSVNRNRLK-----NLNGIPSACLSRLFLDNNELRDTDS---LIHLKNLEI 132

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L +  N+ K      L    +L  + L  N+ T      L    K+  + L+    + E 
Sbjct: 133 LSIRNNKLK--SIVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEP 188

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGN 168
            +    L     ++      +   P  I N  +     +L       
Sbjct: 189 VKYQPELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLWELPVYT 233

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 43/175 (24%), Positives = 58/175 (33%), Gaps = 37/175 (21%)

Query: 171 SSKKLIGLP-----NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQ 225
            SK+   +P     N + L L  N  +   P  F +   L  L L  N    L       
Sbjct: 27  RSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS 86

Query: 226 LRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVE 285
           L  L  L L +N LT   S   ++F  LV+   LK + +  N     L            
Sbjct: 87  LTQLTVLDLGTNQLTVLPS---AVFDRLVH---LKELFMCCNK----LTE---------- 126

Query: 286 EIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNN 340
                       +P+ I  L +LT L+L  N L         RL  L    L  N
Sbjct: 127 ------------LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 45/159 (28%), Positives = 62/159 (38%), Gaps = 34/159 (21%)

Query: 207 YLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAE 266
            L L  N  + L P     L NL+ L L SN L +       +F +L     L V+ L  
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV---GVFDSLTQ---LTVLDLGT 97

Query: 267 NPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITL 326
           N +  VLPS++                           L++L +L +  N L+  LP  +
Sbjct: 98  NQLT-VLPSAV------------------------FDRLVHLKELFMCCNKLT-ELPRGI 131

Query: 327 GRLKKLQGLDLQNNKFEGPIPHE-FCHFSRLYKFYLNRN 364
            RL  L  L L  N+ +  IPH  F   S L   YL  N
Sbjct: 132 ERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 305 LINLTKLSLGYNNLSGSLPITL-GRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNR 363
           L  LT L LG N L+  LP  +  RL  L+ L +  NK    +P      + L    L++
Sbjct: 87  LTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQ 144

Query: 364 NKLSGSIPSCLGD-LNSLRILSL 385
           N+L  SIP    D L+SL    L
Sbjct: 145 NQLK-SIPHGAFDRLSSLTHAYL 166

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 13/141 (9%)

Query: 102 GNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFN-MSTLKTLSL 160
           G  T  ++LYL  N +    P    SL NL+ L +  N L   +P  +F+ ++ L  L L
Sbjct: 37  GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDL 95

Query: 161 LNNTLSGNLPSSKKLIG----LPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFS 216
             N L+  LPS          L +L+ L +  N  +  +P      + L +L L  N   
Sbjct: 96  GTNQLT-VLPS-----AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148

Query: 217 GLIPKALGQLRNLERLGLQSN 237
            +   A  +L +L    L  N
Sbjct: 149 SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 40/144 (27%), Positives = 56/144 (38%), Gaps = 19/144 (13%)

Query: 132 EILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIG----LPNLEGLILG 187
           +IL +  N +    P    ++  LK L L +N L   LP      G    L  L  L LG
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPV-----GVFDSLTQLTVLDLG 96

Query: 188 LNNFSGSIPSFFFNA-SKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSEL 246
            N  +  +PS  F+    L  L +  N  +  +P+ + +L +L  L L  N L S     
Sbjct: 97  TNQLT-VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHG- 153

Query: 247 MSLFSALVNCKSLKVIVLAENPVD 270
                A     SL    L  NP D
Sbjct: 154 -----AFDRLSSLTHAYLFGNPWD 172

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNS-TKLKLLYLSFNNLIGE 120
           LY+  NQ     P        L  + L  NQ    +P  + +S T+L +L L  N L   
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQL-TV 102

Query: 121 IPQEI-GSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTL 165
           +P  +   L +L+ L +  N L   +P  I  ++ L  L+L  N L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQL 147

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 37/188 (19%)

Query: 83  LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN-NLIGEIPQEIGSLRNLEILRIDQNNL 141
           +++ +   +       R    +T+ + + L      I ++   + +L+  + L +  NN+
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60

Query: 142 VGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFN 201
                        + +LS                 G+ NL  L LG N     I +    
Sbjct: 61  -----------EKISSLS-----------------GMENLRILSLGRNLIK-KIENLDAV 91

Query: 202 ASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKV 261
           A  L  L ++YN  + L    + +L NL  L + +N +T+           L     L+ 
Sbjct: 92  ADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITN-----WGEIDKLAALDKLED 144

Query: 262 IVLAENPV 269
           ++LA NP+
Sbjct: 145 LLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 15/132 (11%)

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L+      +  +   L   K    ++LS N    +I   L     L++L L  N  I +I
Sbjct: 30  LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNL-IKKI 85

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGN----LPSSKKLIG 177
                    LE L I  N +      ++  +  L  L +L   +S N         KL  
Sbjct: 86  ENLDAVADTLEELWISYNQI-----ASLSGIEKLVNLRVLY--MSNNKITNWGEIDKLAA 138

Query: 178 LPNLEGLILGLN 189
           L  LE L+L  N
Sbjct: 139 LDKLEDLLLAGN 150

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 30/159 (18%)

Query: 7   AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSY 66
           A+   L L  N L  ++P  +F+  +  T L    N L  S P+ +   L  L  L +S 
Sbjct: 28  AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST 85

Query: 67  NQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI- 125
           NQ +  +PN ++         L                T+LK L L+ N L   +P  + 
Sbjct: 86  NQLQS-LPNGVFD-------KL----------------TQLKELALNTNQL-QSLPDGVF 120

Query: 126 GSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNN 163
             L  L+ LR+ QN L   +PD +F  +++L+ + L +N
Sbjct: 121 DKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 41/177 (23%), Positives = 56/177 (31%), Gaps = 40/177 (22%)

Query: 171 SSKKLIGLP-----NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQ 225
            S+    +P         L L  N+        F   + L  L L  N    L      +
Sbjct: 15  YSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK 74

Query: 226 LRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVE 285
           L +L  L L +N L S  +    +F  L     LK + L  N     L S          
Sbjct: 75  LTSLTYLNLSTNQLQSLPN---GVFDKLTQ---LKELALNTNQ----LQS---------- 114

Query: 286 EIYMYKCNIHGRIPKEI-GNLINLTKLSLGYNNLSGSLPI-TLGRLKKLQGLDLQNN 340
                       +P  +   L  L  L L  N L  S+P     RL  LQ + L +N
Sbjct: 115 ------------LPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 6/109 (5%)

Query: 60  KGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNS-TKLKLLYLSFNNLI 118
             L +  N  K            L+++ L  N+    +P  + N  T L  L LS N L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQL- 88

Query: 119 GEIPQEI-GSLRNLEILRIDQNNLVGFIPDTIFNMST-LKTLSLLNNTL 165
             +P  +   L  L+ L ++ N L   +PD +F+  T LK L L  N L
Sbjct: 89  QSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQL 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 153 STLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAY 212
                L L +N L   + S      LP+L  L L  N  +G  P+ F  AS +  L+L  
Sbjct: 29  LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87

Query: 213 NSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVD 270
           N    +  K    L  L+ L L  N ++           +  +  SL  + LA NP +
Sbjct: 88  NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP------GSFEHLNSLTSLNLASNPFN 139

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 35/143 (24%)

Query: 23  IPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE 82
           IP         +T L  ++N L     D +   LP L  L +  NQ  G I  N      
Sbjct: 27  IPLH-------TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNA----- 73

Query: 83  LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEI-GSLRNLEILRIDQNNL 141
                  F              + ++ L L  N +  EI  ++   L  L+ L +  N +
Sbjct: 74  -------FEGA-----------SHIQELQLGENKI-KEISNKMFLGLHQLKTLNLYDNQI 114

Query: 142 VGFIPDTIF-NMSTLKTLSLLNN 163
              +    F ++++L +L+L +N
Sbjct: 115 SC-VMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 10  EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQF 69
             L+LN+N L       +F        L+   N LT     +  EG   ++ L +  N+ 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90

Query: 70  KGPIPNNLW-HCKELSRVSLSFNQFTGRIPR---DLGNSTKLKLLYLSFNN 116
           K  I N ++    +L  ++L  NQ +  +     +  +   L  L L  +N
Sbjct: 91  KE-ISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFE--HLNSLTSLNL-ASN 136

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 57/360 (15%), Positives = 113/360 (31%), Gaps = 106/360 (29%)

Query: 99  RDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVG-FI-----PDTIFNM 152
           +D+ +  K  L     +++I       G+LR    L   Q  +V  F+      +  F M
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 153 STLKT------------LSLLNNTLSGNLPSSK--------------KLIGLPNLEGLIL 186
           S +KT            +   +   + N   +K               L+ L   + +++
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 187 -GLNNF-----------SGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQL-----RNL 229
            G+              S  +        K+++L L   +    + + L +L      N 
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDF--KIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 230 ERLGLQS-NY---LTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVE 285
                 S N    + S  +EL  L  +      L  +VL       V        +    
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVL-----LNVQ-------NAKAW 259

Query: 286 EIYMYKCNIHGRI-----PKEIGNLIN---LTKLSLGYNNLSGSLPITLGRLKKLQGLDL 337
             +   C    +I      K++ + ++    T +SL +++++ +       L K      
Sbjct: 260 NAFNLSC----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 338 QNNKFEGPIPHEFC----------------HFSRL--YKFYLNRNKLSGSIPSCLGDLNS 379
           Q+      +P E                    +    +K ++N +KL+  I S L  L  
Sbjct: 316 QD------LPREVLTTNPRRLSIIAESIRDGLATWDNWK-HVNCDKLTTIIESSLNVLEP 368

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 27/155 (17%), Positives = 46/155 (29%), Gaps = 35/155 (22%)

Query: 115 NNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKK 174
             LI +  Q   +      L +    +   I +    +     +   +N +       +K
Sbjct: 6   AELIEQAAQ-YTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEI-------RK 56

Query: 175 LIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGL 234
           L G P L                      +L  L +  N    +       L +L  L L
Sbjct: 57  LDGFPLL---------------------RRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95

Query: 235 QSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPV 269
            +N L       +     L + KSL  + +  NPV
Sbjct: 96  TNNSLVE-----LGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 4/105 (3%)

Query: 282 VSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNK 341
           V   E+ +    I   I      L     +    N +   L      L++L+ L + NN+
Sbjct: 19  VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNR 75

Query: 342 FEGPIPHEFCHFSRLYKFYLNRNKLSG-SIPSCLGDLNSLRILSL 385
                         L +  L  N L        L  L SL  L +
Sbjct: 76  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 30/119 (25%), Positives = 43/119 (36%), Gaps = 8/119 (6%)

Query: 151 NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLEL 210
             S +K L L N+  S              LE L       + SI +     +KL  LEL
Sbjct: 15  TPSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLEL 71

Query: 211 AYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPV 269
           + N  SG +     +  NL  L L  N +       +S    L   ++LK + L    V
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD-----LSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 283 SVEEIYMYKCNI-HGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNK 341
            V+E+ +       G++         L  LS     L+ S+   L +L KL+ L+L +N+
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNR 75

Query: 342 FEGPIPHEFCHFSRLYKFYLNRNKLSG-SIPSCLGDLNSLRILSL 385
             G +         L    L+ NK+   S    L  L +L+ L L
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 4/104 (3%)

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L +  N+ +           +L+++SLS NQ            TKL +LYL  N L   +
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL-QSL 91

Query: 122 PQEI-GSLRNLEILRIDQNNLVGFIPDTIF-NMSTLKTLSLLNN 163
           P  +   L  L+ L +D N L   +PD IF  +++L+ + L  N
Sbjct: 92  PNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 305 LINLTKLSLGYNNLSGSLPITL-GRLKKLQGLDLQNNKFEGPIPHE-FCHFSRLYKFYLN 362
           L  LTKLSL  N +  SLP  +  +L KL  L L  NK +  +P+  F   ++L +  L+
Sbjct: 51  LTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELALD 108

Query: 363 RNKLSGSIPSCLGD-LNSLRILSL 385
            N+L  S+P  + D L SL+ + L
Sbjct: 109 TNQLK-SVPDGIFDRLTSLQKIWL 131

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 3e-04
 Identities = 32/289 (11%), Positives = 78/289 (26%), Gaps = 37/289 (12%)

Query: 67  NQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIG 126
                          E     +        +  D        +  +  +  +  + Q   
Sbjct: 55  KLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITI 114

Query: 127 SLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLIL 186
                E    D +++   I +     +  + L   +        S  + + L  +   + 
Sbjct: 115 GXWGYEGE--DCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMP 172

Query: 187 GLNNF----SGSIPSFFFNASKLYYLELAYNSFSGLIPKALG--QLRNLERLGL---QSN 237
            LNN     + ++         L  LE+        + + +    L NLE+L L     +
Sbjct: 173 LLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED 232

Query: 238 YLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGR 297
           Y       +     +     +LK + + +     V+        +               
Sbjct: 233 YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI--------------- 277

Query: 298 IPKEIGNLINLTKLSLGYNNLSGS----LPITLGRLKKLQGLDLQNNKF 342
                  L  L  + +    L+      L   + ++K L+ ++++ N  
Sbjct: 278 -------LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.1 bits (95), Expect = 4e-04
 Identities = 26/198 (13%), Positives = 64/198 (32%), Gaps = 31/198 (15%)

Query: 71  GPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGS--L 128
             +   L     L+ + +        +         LK L +    L   + ++I    L
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDL 218

Query: 129 RNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGL 188
            NLE L +              +      +++     S +          PNL+ L +  
Sbjct: 219 PNLEKLVLYVGVE---------DYGFDGDMNVFRPLFSKD--------RFPNLKWLGIVD 261

Query: 189 NNFSGSIPSFFFNA---SKLYYLELAYNSFSG----LIPKALGQLRNLERLGLQSNYLTS 241
                 +   F  +    +L  ++++    +     L+   + ++++L+ + ++ NYL+ 
Sbjct: 262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321

Query: 242 STSELMSLFSALVNCKSL 259
                  L  +L     +
Sbjct: 322 EM--KKELQKSLPMKIDV 337

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 293 NIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCH 352
           +  G+I       +NL  LSL    L  S+   L +L KL+ L+L  N+  G +      
Sbjct: 36  SNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAEK 93

Query: 353 FSRLYKFYLNRNKLSG-SIPSCLGDLNSLRILSL 385
              L    L+ NKL   S    L  L  L+ L L
Sbjct: 94  LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 38.6 bits (90), Expect = 9e-04
 Identities = 31/119 (26%), Positives = 42/119 (35%), Gaps = 8/119 (6%)

Query: 151 NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLEL 210
             + ++ L L N   S +           NLE L L       S+ S      KL  LEL
Sbjct: 22  TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLEL 78

Query: 211 AYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPV 269
           + N   G +     +L NL  L L  N L       +S    L   + LK + L    V
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-----ISTLEPLKKLECLKSLDLFNCEV 132

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 52/280 (18%), Positives = 98/280 (35%), Gaps = 39/280 (13%)

Query: 101 LGNSTKLKLLYLSFNNLIGEIPQEIGSL-----RNLEILRIDQNNL----VGFIPDTI-F 150
                 +  L LS NNL      E+         ++  L +  N+L       +   +  
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 151 NMSTLKTLSLLNNTLS--GNLPSSKKLIGLP-NLEGLILGLNNFSGS-----IPSFFFNA 202
             + + +L+L  N LS   +    K L  +P  +  L LG N+FS         +F    
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 203 SKLYYLELAYNSFSGLIPKALGQL-----RNLERLGLQSNYLTSSTSELMSLFSALVNCK 257
           + +  L L  N         L Q+      N+  L L+ N L S     ++ F A +   
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA- 196

Query: 258 SLKVIVLAENPV--DGV--LPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLI----NLT 309
           S+  + L+ N +       L     ++   V  + +    +HG   + +  L     +L 
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 310 KLSLGYNNLSG-------SLPITLGRLKKLQGLDLQNNKF 342
            + L Y+ +         +L      ++K+  +D    + 
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	385
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.98
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.7
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.64
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.44
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.34
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.32
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.29
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.28
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.18
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.99
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.95
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.89
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.79
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.69
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.59
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.53
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.46
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.29
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.96
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.25
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.33
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.58
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	88.23

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.2e-43  Score=345.79  Aligned_cols=357  Identities=35%  Similarity=0.538  Sum_probs=211.9

Q ss_pred             CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCC-CCcE
Q 043347            7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK-ELSR   85 (385)
Q Consensus         7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~   85 (385)
                      ++|++|++++|.+.+.+|..+.++++++ +|++++|.+++.+|...+..+++|++|++++|.+.+..+..+..++ +|++
T Consensus       294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~-~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~  372 (768)
T 3rgz_A          294 DTLTGLDLSGNHFYGAVPPFFGSCSLLE-SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT  372 (768)
T ss_dssp             TTCSEEECCSSEEEECCCGGGGGCTTCC-EEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred             CcCCEEECcCCcCCCccchHHhcCCCcc-EEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence            4555555555555544555555555555 4555555555455554444555555555555555544454555544 5555


Q ss_pred             EecccccccccCCCCccC--cccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCC
Q 043347           86 VSLSFNQFTGRIPRDLGN--STKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNN  163 (385)
Q Consensus        86 L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~  163 (385)
                      |++++|.+.+..+..+..  +++|++|++.+|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus       373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n  452 (768)
T 3rgz_A          373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN  452 (768)
T ss_dssp             EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence            555555555444444443  555666666666655555666666666666666666665555566666666666666666


Q ss_pred             cccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccc
Q 043347          164 TLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSST  243 (385)
Q Consensus       164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  243 (385)
                      .+.+..|..  +..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+.+++.+++|+.|++++|.+... 
T Consensus       453 ~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-  529 (768)
T 3rgz_A          453 MLEGEIPQE--LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN-  529 (768)
T ss_dssp             CCCSCCCGG--GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE-
T ss_pred             cccCcCCHH--HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc-
Confidence            655444432  44566666666666666655666666666666666666666655666666666666666666666543 


Q ss_pred             hhhhhhhHhhhcccCceEEEccCCCCCCCCCCccccc-------------------------------------------
Q 043347          244 SELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNL-------------------------------------------  280 (385)
Q Consensus       244 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------------------------------------------  280 (385)
                           .+..+..+++|+.|++++|.+.+..|..+...                                           
T Consensus       530 -----~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  604 (768)
T 3rgz_A          530 -----IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL  604 (768)
T ss_dssp             -----CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred             -----CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence                 22456666677777777666655544432210                                           


Q ss_pred             --------------------------ccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCe
Q 043347          281 --------------------------SVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQG  334 (385)
Q Consensus       281 --------------------------~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  334 (385)
                                                .++++.|++++|++.+.+|..++.+++|+.|++++|.+++.+|..++.+++|+.
T Consensus       605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~  684 (768)
T 3rgz_A          605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI  684 (768)
T ss_dssp             GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence                                      134556666666666666666666666666666666666666666666666666


Q ss_pred             EeccCCcccCCChhhhhcCCCccEEEccCCcccccCCC
Q 043347          335 LDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPS  372 (385)
Q Consensus       335 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  372 (385)
                      |++++|++++.+|..+..+++|+.|++++|++++.+|.
T Consensus       685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            66666666666666666666666666666666666654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.2e-43  Score=346.02  Aligned_cols=370  Identities=33%  Similarity=0.484  Sum_probs=210.6

Q ss_pred             CCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCC-C
Q 043347            3 LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHC-K   81 (385)
Q Consensus         3 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~   81 (385)
                      |.++++|++|++++|.+.+.+|..+.++++++ +|++++|.+++.+|..   .+++|++|++++|.+.+..+..+... +
T Consensus       219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~  294 (768)
T 3rgz_A          219 LGDCSALQHLDISGNKLSGDFSRAISTCTELK-LLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACD  294 (768)
T ss_dssp             CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCC-EEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCT
T ss_pred             cccCCCCCEEECcCCcCCCcccHHHhcCCCCC-EEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcC
Confidence            45566666777776666666666666666666 5666666555433332   34444444444444443333333332 4


Q ss_pred             CCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcc-cCCCcCCcEEEecccc--------------------
Q 043347           82 ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQE-IGSLRNLEILRIDQNN--------------------  140 (385)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~--------------------  140 (385)
                      +|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.                    
T Consensus       295 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~  374 (768)
T 3rgz_A          295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD  374 (768)
T ss_dssp             TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred             cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEE
Confidence            4444444444444344444444444444444444433333322 3333334444333333                    


Q ss_pred             -------------------------------cccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEcccc
Q 043347          141 -------------------------------LVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLN  189 (385)
Q Consensus       141 -------------------------------~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  189 (385)
                                                     +....+..+..+++|+.|++++|.+.+..|..  +..+++|+.|++++|
T Consensus       375 Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~L~~n  452 (768)
T 3rgz_A          375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS--LGSLSKLRDLKLWLN  452 (768)
T ss_dssp             CCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG--GGGCTTCCEEECCSS
T ss_pred             ccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH--HhcCCCCCEEECCCC
Confidence                                           33333334444444444444444444333322  334455555555555


Q ss_pred             ccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCC
Q 043347          190 NFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPV  269 (385)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  269 (385)
                      .+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+...      .+..+..+++|+.|++++|.+
T Consensus       453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~------~p~~~~~l~~L~~L~L~~N~l  526 (768)
T 3rgz_A          453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE------IPKWIGRLENLAILKLSNNSF  526 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC------CCGGGGGCTTCCEEECCSSCC
T ss_pred             cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc------CChHHhcCCCCCEEECCCCcc
Confidence            55444445555555555555555555544555555555555666555555433      223455666666666666666


Q ss_pred             CCCCCCcccccccceeEEEeeccccCCCCCcc------------------------------------------------
Q 043347          270 DGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKE------------------------------------------------  301 (385)
Q Consensus       270 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~------------------------------------------------  301 (385)
                      .+..|..+..+ ++++.|++++|++.+.+|..                                                
T Consensus       527 ~~~~p~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  605 (768)
T 3rgz_A          527 SGNIPAELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN  605 (768)
T ss_dssp             EEECCGGGGGC-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG
T ss_pred             cCcCCHHHcCC-CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh
Confidence            66666666555 56777777766655443332                                                


Q ss_pred             ----------------------ccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEE
Q 043347          302 ----------------------IGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKF  359 (385)
Q Consensus       302 ----------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  359 (385)
                                            +..+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..++.+++|+.|
T Consensus       606 ~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L  685 (768)
T 3rgz_A          606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL  685 (768)
T ss_dssp             GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE
Confidence                                  2234567777777777777778888888888888888888888888888888888888


Q ss_pred             EccCCcccccCCCcccccccCccccC
Q 043347          360 YLNRNKLSGSIPSCLGDLNSLRILSL  385 (385)
Q Consensus       360 ~l~~~~~~~~~~~~~~~l~~L~~l~i  385 (385)
                      ++++|++++.+|..+.++++|++|++
T Consensus       686 dLs~N~l~g~ip~~l~~l~~L~~L~l  711 (768)
T 3rgz_A          686 DLSSNKLDGRIPQAMSALTMLTEIDL  711 (768)
T ss_dssp             ECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred             ECCCCcccCcCChHHhCCCCCCEEEC
Confidence            88888888888888888888887764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.3e-40  Score=315.85  Aligned_cols=369  Identities=21%  Similarity=0.199  Sum_probs=171.9

Q ss_pred             CCCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCC
Q 043347            2 ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK   81 (385)
Q Consensus         2 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~   81 (385)
                      +|.++++|++|++++|.+.+..|.++.++++++ +|++++|.++ .+++..+..+++|++|++++|.+.+..+..+..++
T Consensus        52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~-~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~  129 (606)
T 3t6q_A           52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD-TLVLTANPLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK  129 (606)
T ss_dssp             TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCC-EEECTTCCCS-EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred             HhccCccceEEECCCCccceeChhhccCccccC-eeeCCCCccc-ccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence            345556666666666655544455555555555 4666666555 33333334556666666666655544344555555


Q ss_pred             CCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCc--EEEeccccccccc--------------
Q 043347           82 ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLE--ILRIDQNNLVGFI--------------  145 (385)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~~~--------------  145 (385)
                      +|++|++++|.+.+..+..+..+++|++|++++|.+....+..++.+++|+  .+++++|.+....              
T Consensus       130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l  209 (606)
T 3t6q_A          130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF  209 (606)
T ss_dssp             TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred             cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence            666666665555532222333355555555555555433344444444444  3444443332211              


Q ss_pred             -------------------------------------------------------------CccccCCCCCcEEEccCCc
Q 043347          146 -------------------------------------------------------------PDTIFNMSTLKTLSLLNNT  164 (385)
Q Consensus       146 -------------------------------------------------------------~~~~~~l~~L~~l~l~~~~  164 (385)
                                                                                   +..+..+++|++|++++|.
T Consensus       210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  289 (606)
T 3t6q_A          210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH  289 (606)
T ss_dssp             TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred             CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence                                                                         1123334444445544444


Q ss_pred             ccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCcccccc-CcccccCCCCccEEEecCCcccccc
Q 043347          165 LSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGL-IPKALGQLRNLERLGLQSNYLTSST  243 (385)
Q Consensus       165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~  243 (385)
                      +. .+|..  +..+++|++|++++|.+....+..+..+++|++|++++|.+... ....+..+++|+.|++++|.+....
T Consensus       290 l~-~lp~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  366 (606)
T 3t6q_A          290 LS-ELPSG--LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD  366 (606)
T ss_dssp             CS-CCCSS--CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred             cC-CCChh--hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence            43 22221  33444555555555544433333444444444444444443311 1223444555555555555444332


Q ss_pred             hhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeecc-------------------------ccCCCC
Q 043347          244 SELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKC-------------------------NIHGRI  298 (385)
Q Consensus       244 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~-------------------------~~~~~~  298 (385)
                      .    ....+..+++|+.|++++|.+.+..+..+... +++++|++++|                         .+.+..
T Consensus       367 ~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  441 (606)
T 3t6q_A          367 C----CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS  441 (606)
T ss_dssp             E----STTTTTTCTTCCEEECCSCSCEEECTTTTTTC-TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC
T ss_pred             C----cchhcccCCCCCEEECCCCcCCcCCHHHhcCC-ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC
Confidence            0    01234444555555555554444333333333 34444444444                         444334


Q ss_pred             CccccCCCCccEEECcCccccCC---CccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCccc
Q 043347          299 PKEIGNLINLTKLSLGYNNLSGS---LPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLG  375 (385)
Q Consensus       299 ~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  375 (385)
                      +..+..+++|++|++++|.+.+.   .+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..|..+.
T Consensus       442 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  521 (606)
T 3t6q_A          442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS  521 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGT
T ss_pred             HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhC
Confidence            44444444444444444444321   112344444455555555544444444444455555555555555544444444


Q ss_pred             ccccC
Q 043347          376 DLNSL  380 (385)
Q Consensus       376 ~l~~L  380 (385)
                      +++.|
T Consensus       522 ~l~~L  526 (606)
T 3t6q_A          522 HLKGI  526 (606)
T ss_dssp             TCCSC
T ss_pred             ccccc
Confidence            44444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3e-40  Score=315.08  Aligned_cols=373  Identities=22%  Similarity=0.220  Sum_probs=261.7

Q ss_pred             CCCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCC
Q 043347            2 ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK   81 (385)
Q Consensus         2 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~   81 (385)
                      +|.++++|++|++++|.+.+..|..+.++++++ +|++++|.++ .++...+..+++|++|++++|.+.+.....+..++
T Consensus        76 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  153 (606)
T 3t6q_A           76 TFQSQHRLDTLVLTANPLIFMAETALSGPKALK-HLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE  153 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC-EEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCT
T ss_pred             hccCccccCeeeCCCCcccccChhhhccccccc-EeeccccCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCc
Confidence            466777777777777777655566666777776 5777777666 44333444666666666666666543333333455


Q ss_pred             CCcEEecccccccccCC---------------------------------------------------------------
Q 043347           82 ELSRVSLSFNQFTGRIP---------------------------------------------------------------   98 (385)
Q Consensus        82 ~L~~L~l~~~~~~~~~~---------------------------------------------------------------   98 (385)
                      +|++|++++|.+.+..+                                                               
T Consensus       154 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~  233 (606)
T 3t6q_A          154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG  233 (606)
T ss_dssp             TCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECC
T ss_pred             ccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheech
Confidence            55555555554332211                                                               


Q ss_pred             --------------------------------------CCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccc
Q 043347           99 --------------------------------------RDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNN  140 (385)
Q Consensus        99 --------------------------------------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  140 (385)
                                                            ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.
T Consensus       234 ~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~  312 (606)
T 3t6q_A          234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK  312 (606)
T ss_dssp             CCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCC
T ss_pred             hhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCC
Confidence                                                  12334455555555555544 444455555555555555555


Q ss_pred             cccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC--CcccccCCcccEEEccCcccccc
Q 043347          141 LVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI--PSFFFNASKLYYLELAYNSFSGL  218 (385)
Q Consensus       141 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~  218 (385)
                      +....+..+..+++|++|++++|.+....+.. .+..+++|++|++++|.+....  +..+..+++|++|++++|.+.+.
T Consensus       313 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  391 (606)
T 3t6q_A          313 FENLCQISASNFPSLTHLSIKGNTKRLELGTG-CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL  391 (606)
T ss_dssp             CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS-TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE
T ss_pred             cCcCchhhhhccCcCCEEECCCCCcccccchh-hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC
Confidence            55444455555566666666655544333322 2556777777777777766433  45567778888888888877766


Q ss_pred             CcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCC-
Q 043347          219 IPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGR-  297 (385)
Q Consensus       219 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-  297 (385)
                      .+..+..+++|+.|++++|.+.....     ...+..+++|+.|++++|.+.+..+..+... +++++|++++|++.+. 
T Consensus       392 ~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~  465 (606)
T 3t6q_A          392 KTEAFKECPQLELLDLAFTRLKVKDA-----QSPFQNLHLLKVLNLSHSLLDISSEQLFDGL-PALQHLNLQGNHFPKGN  465 (606)
T ss_dssp             CTTTTTTCTTCSEEECTTCCEECCTT-----CCTTTTCTTCCEEECTTCCCBTTCTTTTTTC-TTCCEEECTTCBCGGGE
T ss_pred             CHHHhcCCccCCeEECCCCcCCCccc-----chhhhCcccCCEEECCCCccCCcCHHHHhCC-CCCCEEECCCCCCCccc
Confidence            67777788888888888887765422     1347788999999999999988888777776 8999999999998762 


Q ss_pred             --CCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCccc
Q 043347          298 --IPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLG  375 (385)
Q Consensus       298 --~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  375 (385)
                        .+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..+..+++| .|++++|++++..|..+.
T Consensus       466 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~  544 (606)
T 3t6q_A          466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP  544 (606)
T ss_dssp             ECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH
T ss_pred             cccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc
Confidence              33568889999999999999998888899999999999999999998888899999999 999999999988888888


Q ss_pred             ccccCccccC
Q 043347          376 DLNSLRILSL  385 (385)
Q Consensus       376 ~l~~L~~l~i  385 (385)
                      .+++|+.+++
T Consensus       545 ~l~~L~~L~l  554 (606)
T 3t6q_A          545 ILSQQRTINL  554 (606)
T ss_dssp             HHHTSSEEEC
T ss_pred             cCCCCCEEeC
Confidence            8999988864

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.4e-40  Score=313.29  Aligned_cols=344  Identities=19%  Similarity=0.329  Sum_probs=278.7

Q ss_pred             CCcccccccceeceeEeecCccccC-----------------CChhhh-cCCCcccEEEccCCcccCcCCCCccCCCCCc
Q 043347           23 IPASIFNLSSISTGLDFSNNSLTGS-----------------FPDDMC-EGLPRLKGLYVSYNQFKGPIPNNLWHCKELS   84 (385)
Q Consensus        23 ~~~~~~~~~~l~~~L~l~~~~~~~~-----------------~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~   84 (385)
                      +|..+.++++++ +|++++|.+++.                 +|..+. ..+++|++|++++|.+.+..+..+..+++|+
T Consensus       198 ip~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  276 (636)
T 4eco_A          198 VSKAVMRLTKLR-QFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ  276 (636)
T ss_dssp             ECGGGGGCTTCC-EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred             CCHHHhcccCCC-EEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence            777888888998 799999999853                 777653 2689999999999998888888999999999


Q ss_pred             EEeccccc-ccc-cCCCCccCc------ccccEEEeecccccCCCCc--ccCCCcCCcEEEecccccccccCccccCCCC
Q 043347           85 RVSLSFNQ-FTG-RIPRDLGNS------TKLKLLYLSFNNLIGEIPQ--EIGSLRNLEILRIDQNNLVGFIPDTIFNMST  154 (385)
Q Consensus        85 ~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  154 (385)
                      +|++++|. +.+ .+|..+..+      ++|++|++++|.+. .+|.  .++.+++|+.|++++|.+...++ .+..+++
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~  354 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK  354 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence            99999997 776 677777665      89999999999988 7887  89999999999999999885666 7888899


Q ss_pred             CcEEEccCCcccccCCCCcccCCCCC-CceEEccccccCCCCCcccccCC--cccEEEccCccccccCccccc-------
Q 043347          155 LKTLSLLNNTLSGNLPSSKKLIGLPN-LEGLILGLNNFSGSIPSFFFNAS--KLYYLELAYNSFSGLIPKALG-------  224 (385)
Q Consensus       155 L~~l~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~-------  224 (385)
                      |+.|++++|.+. .+|..  +..+++ |++|++++|.+. ..+..+...+  +|++|++++|.+.+..+..+.       
T Consensus       355 L~~L~L~~N~l~-~lp~~--l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~  430 (636)
T 4eco_A          355 LASLNLAYNQIT-EIPAN--FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF  430 (636)
T ss_dssp             ESEEECCSSEEE-ECCTT--SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred             CCEEECCCCccc-cccHh--hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence            999999999887 55543  667788 999999999888 4555665544  899999999998877777676       


Q ss_pred             CCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCccccccc-------ceeEEEeeccccCCC
Q 043347          225 QLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSV-------SVEEIYMYKCNIHGR  297 (385)
Q Consensus       225 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-------~l~~L~l~~~~~~~~  297 (385)
                      .+++|+.|++++|.+...+.      ..+..+++|+.|++++|.+. ..|........       ++++|++++|++. .
T Consensus       431 ~~~~L~~L~Ls~N~l~~lp~------~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~  502 (636)
T 4eco_A          431 KGINVSSINLSNNQISKFPK------ELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-K  502 (636)
T ss_dssp             CCCCEEEEECCSSCCCSCCT------HHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-B
T ss_pred             cCCCCCEEECcCCccCcCCH------HHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-c
Confidence            77899999999998886543      34566889999999999888 44444333212       8999999999988 5


Q ss_pred             CCcccc--CCCCccEEECcCccccCCCccccccCCCCCeEec------cCCcccCCChhhhhcCCCccEEEccCCccccc
Q 043347          298 IPKEIG--NLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDL------QNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGS  369 (385)
Q Consensus       298 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  369 (385)
                      +|..+.  .+++|++|++++|.+.+ +|..+..+++|+.|++      ++|++.+..|..+..+++|++|++++|++ +.
T Consensus       503 lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~  580 (636)
T 4eco_A          503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RK  580 (636)
T ss_dssp             CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred             cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Cc
Confidence            666665  88999999999999985 7888888999999999      45777788888898999999999999999 46


Q ss_pred             CCCcccccccCccccC
Q 043347          370 IPSCLGDLNSLRILSL  385 (385)
Q Consensus       370 ~~~~~~~l~~L~~l~i  385 (385)
                      +|..+.  ++|+.|++
T Consensus       581 ip~~~~--~~L~~L~L  594 (636)
T 4eco_A          581 VNEKIT--PNISVLDI  594 (636)
T ss_dssp             CCSCCC--TTCCEEEC
T ss_pred             cCHhHh--CcCCEEEC
Confidence            676654  67777654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.6e-40  Score=312.25  Aligned_cols=141  Identities=19%  Similarity=0.216  Sum_probs=105.5

Q ss_pred             CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEE
Q 043347            7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRV   86 (385)
Q Consensus         7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L   86 (385)
                      +++++|++++|.+.+..+..+.++++++ +|++++|.++ .+++..+..+++|++|++++|.+.+..+..|..+++|++|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  109 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQ-WLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL  109 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCC-EEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCc-EEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence            5678888888888765666777788887 6888888877 5555555678888888888888776667778888888888


Q ss_pred             ecccccccccCCCCccCcccccEEEeecccccC-CCCcccCCCcCCcEEEecccccccccCccc
Q 043347           87 SLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIG-EIPQEIGSLRNLEILRIDQNNLVGFIPDTI  149 (385)
Q Consensus        87 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  149 (385)
                      ++++|.+....+..++++++|++|++++|.+.+ .+|..++.+++|++|++++|.++...+..+
T Consensus       110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~  173 (606)
T 3vq2_A          110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL  173 (606)
T ss_dssp             ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT
T ss_pred             EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh
Confidence            888887775555677788888888888887765 457778888888888888877765544433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.3e-39  Score=307.06  Aligned_cols=372  Identities=21%  Similarity=0.229  Sum_probs=249.4

Q ss_pred             CCCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCC
Q 043347            2 ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK   81 (385)
Q Consensus         2 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~   81 (385)
                      +|.++++|++|++++|.+.+..|.++.++++++ +|++++|.++ .+++..+..+++|++|++++|.+.+..+..+..++
T Consensus        51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~-~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  128 (606)
T 3vq2_A           51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS-NLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI  128 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC-EEECTTCCCC-CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred             hccCCccCcEEeCCCCcccccCHHHhhchhhcC-EeECCCCccc-ccChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence            577888888888888888866677788888888 7888888888 55445556888888888888888766666788888


Q ss_pred             CCcEEecccccccc-cCCCCccCcccccEEEeecccccCCCCcccCCCc---------------------------CCcE
Q 043347           82 ELSRVSLSFNQFTG-RIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLR---------------------------NLEI  133 (385)
Q Consensus        82 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~---------------------------~L~~  133 (385)
                      +|++|++++|.+.+ .+|..+.++++|++|++++|.+.+..+..++.+.                           +|+.
T Consensus       129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~  208 (606)
T 3vq2_A          129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE  208 (606)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred             CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeee
Confidence            88888888888764 4577788888888888888776544333222111                           3344


Q ss_pred             EEecccccc-----------------------------------------------------------------------
Q 043347          134 LRIDQNNLV-----------------------------------------------------------------------  142 (385)
Q Consensus       134 L~l~~~~~~-----------------------------------------------------------------------  142 (385)
                      |++++|.+.                                                                       
T Consensus       209 L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~  288 (606)
T 3vq2_A          209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS  288 (606)
T ss_dssp             EEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCS
T ss_pred             eeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCC
Confidence            444333221                                                                       


Q ss_pred             ---------cccCccccCCCCCcEEEccCCcccccCCCC------------------cccCCCCCCceEEccccccCCC-
Q 043347          143 ---------GFIPDTIFNMSTLKTLSLLNNTLSGNLPSS------------------KKLIGLPNLEGLILGLNNFSGS-  194 (385)
Q Consensus       143 ---------~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~------------------~~~~~~~~L~~L~l~~~~~~~~-  194 (385)
                               ...+ .+..+++|+++++++|.+ +.+|..                  ..+..+++|++|++++|.+... 
T Consensus       289 ~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~  366 (606)
T 3vq2_A          289 AMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSG  366 (606)
T ss_dssp             EEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEE
T ss_pred             EEEecCccchhhh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCc
Confidence                     0111 344455677777777766 344421                  0123444555555555544422 


Q ss_pred             -CCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCC
Q 043347          195 -IPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVL  273 (385)
Q Consensus       195 -~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  273 (385)
                       .+..+..+++|++|++++|.+... +..+..+++|+.|++++|.+....+     ...+..+++|+.|++++|.+.+..
T Consensus       367 ~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~  440 (606)
T 3vq2_A          367 CCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTE-----FSAFLSLEKLLYLDISYTNTKIDF  440 (606)
T ss_dssp             ECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTT-----TTTTTTCTTCCEEECTTSCCEECC
T ss_pred             chhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccC-----hhhhhccccCCEEECcCCCCCccc
Confidence             134455566666666666665532 3456666677777777766655421     135667778888888888777766


Q ss_pred             CCcccccccceeEEEeeccccCC-CCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhc
Q 043347          274 PSSIGNLSVSVEEIYMYKCNIHG-RIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCH  352 (385)
Q Consensus       274 ~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  352 (385)
                      +..+... +++++|++++|++.+ ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..|..+..
T Consensus       441 ~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  519 (606)
T 3vq2_A          441 DGIFLGL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ  519 (606)
T ss_dssp             TTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT
T ss_pred             hhhhcCC-CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC
Confidence            6666666 678888888887775 35667777888888888888887667777777888888888888887766777777


Q ss_pred             CCCccEEEccCCcccccCCCcccccc-cCccccC
Q 043347          353 FSRLYKFYLNRNKLSGSIPSCLGDLN-SLRILSL  385 (385)
Q Consensus       353 ~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~l~i  385 (385)
                      +++|+.|++++|+++ .+|..+..++ +|+.+++
T Consensus       520 l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l  552 (606)
T 3vq2_A          520 LYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNL  552 (606)
T ss_dssp             CTTCCEEECTTSCCC-CEESCGGGSCTTCCEEEC
T ss_pred             CCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEc
Confidence            888888888888877 4555566665 4776653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.6e-40  Score=311.88  Aligned_cols=361  Identities=22%  Similarity=0.303  Sum_probs=303.4

Q ss_pred             CcccEEEecCccccCCCCcccccccceeceeEeecCcc------------------------------------------
Q 043347            7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSL------------------------------------------   44 (385)
Q Consensus         7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~------------------------------------------   44 (385)
                      .+++.|+|+++.+.+.+|++++++..++ +|++++|.+                                          
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~-~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~  159 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELE-VLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS  159 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCC-EEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccce-EEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence            4789999999999999999999999999 799998843                                          


Q ss_pred             ------------------------------------ccCCChhhhcCCCcccEEEccCCcccCc----------------
Q 043347           45 ------------------------------------TGSFPDDMCEGLPRLKGLYVSYNQFKGP----------------   72 (385)
Q Consensus        45 ------------------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~----------------   72 (385)
                                                          ++ +|..+ ..+++|++|++++|.+.+.                
T Consensus       160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~  237 (636)
T 4eco_A          160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ  237 (636)
T ss_dssp             HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred             HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHH-hcccCCCEEECcCCccccccccccccccccchhcc
Confidence                                                32 56554 4799999999999999874                


Q ss_pred             -CCCCcc--CCCCCcEEecccccccccCCCCccCcccccEEEeeccc-ccC-CCCcccCCC------cCCcEEEeccccc
Q 043347           73 -IPNNLW--HCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNN-LIG-EIPQEIGSL------RNLEILRIDQNNL  141 (385)
Q Consensus        73 -~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~  141 (385)
                       ++..+.  .+++|++|++++|.+.+..|..+.++++|++|++++|. +.+ .+|..++.+      ++|++|++++|.+
T Consensus       238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l  317 (636)
T 4eco_A          238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL  317 (636)
T ss_dssp             HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred             cCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence             788888  99999999999999888999999999999999999998 776 678777765      9999999999999


Q ss_pred             ccccCc--cccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCc-ccEEEccCcccccc
Q 043347          142 VGFIPD--TIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASK-LYYLELAYNSFSGL  218 (385)
Q Consensus       142 ~~~~~~--~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~  218 (385)
                      + .+|.  .+..+++|+.|++++|.+.+.+|   .+..+++|++|++++|.+. ..+..+..+++ |++|++++|.+. .
T Consensus       318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~  391 (636)
T 4eco_A          318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-Y  391 (636)
T ss_dssp             S-SCCCHHHHTTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-S
T ss_pred             C-ccCchhhhccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-c
Confidence            8 6777  89999999999999999987777   3678889999999999988 56667888888 999999999988 4


Q ss_pred             CcccccCCC--CccEEEecCCcccccchhhhhhhHhhh-------cccCceEEEccCCCCCCCCCCcccccccceeEEEe
Q 043347          219 IPKALGQLR--NLERLGLQSNYLTSSTSELMSLFSALV-------NCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYM  289 (385)
Q Consensus       219 ~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l  289 (385)
                      .+..+...+  +|+.|++++|.+....+      ..+.       .+++|+.|++++|.+.. .|..+....+++++|++
T Consensus       392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p------~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~L  464 (636)
T 4eco_A          392 IPNIFDAKSVSVMSAIDFSYNEIGSVDG------KNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINL  464 (636)
T ss_dssp             CCSCCCTTCSSCEEEEECCSSCTTTTTT------CSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEEC
T ss_pred             cchhhhhcccCccCEEECcCCcCCCcch------hhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEEC
Confidence            566665544  89999999998876532      3344       67799999999999984 44444433379999999


Q ss_pred             eccccCCCCCccccCC-------CCccEEECcCccccCCCccccc--cCCCCCeEeccCCcccCCChhhhhcCCCccEEE
Q 043347          290 YKCNIHGRIPKEIGNL-------INLTKLSLGYNNLSGSLPITLG--RLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFY  360 (385)
Q Consensus       290 ~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  360 (385)
                      ++|++....+..+...       ++|+.|++++|.+. .+|..+.  .+++|+.|++++|++++ +|..+..+++|+.|+
T Consensus       465 s~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~  542 (636)
T 4eco_A          465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG  542 (636)
T ss_dssp             CSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEE
T ss_pred             CCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEE
Confidence            9999984433344333       39999999999999 7787776  89999999999999996 888889999999999


Q ss_pred             c------cCCcccccCCCcccccccCccccC
Q 043347          361 L------NRNKLSGSIPSCLGDLNSLRILSL  385 (385)
Q Consensus       361 l------~~~~~~~~~~~~~~~l~~L~~l~i  385 (385)
                      +      ++|++.+.+|..+.++++|+.|++
T Consensus       543 Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~L  573 (636)
T 4eco_A          543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQI  573 (636)
T ss_dssp             CCSCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred             CCCCcccccCcccccChHHHhcCCCCCEEEC
Confidence            9      567788889999999999998875

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.7e-39  Score=306.46  Aligned_cols=368  Identities=19%  Similarity=0.197  Sum_probs=237.1

Q ss_pred             CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEE
Q 043347            7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRV   86 (385)
Q Consensus         7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L   86 (385)
                      +++++|++++|.+.+..+.++.++++++ +|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQ-VLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCC-EEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCce-EEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence            3577777777777655555667777777 6777777776 5555566667777777777777766666677777777777


Q ss_pred             ecccccccccCCCCccCcccccEEEeecccccC-CCCcccCCCcCCcEEEecccccccccCccccCCCCC----cEEEcc
Q 043347           87 SLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIG-EIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTL----KTLSLL  161 (385)
Q Consensus        87 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~l~l~  161 (385)
                      ++++|.+....+..++++++|++|++++|.+.. .+|..++++++|++|++++|.+....+..+..+++|    +.++++
T Consensus       106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~  185 (570)
T 2z63_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (570)
T ss_dssp             ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence            777777664444456777777777777776664 356667777777777777776655444444444443    344444


Q ss_pred             CCcccccCCCC---------------------------------------------------------------------
Q 043347          162 NNTLSGNLPSS---------------------------------------------------------------------  172 (385)
Q Consensus       162 ~~~~~~~~~~~---------------------------------------------------------------------  172 (385)
                      +|.+....+..                                                                     
T Consensus       186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~  265 (570)
T 2z63_A          186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  265 (570)
T ss_dssp             TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred             CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence            43322111100                                                                     


Q ss_pred             ----------cccCCCCCCceEEccccccCCCCCccc------------------------------------------c
Q 043347          173 ----------KKLIGLPNLEGLILGLNNFSGSIPSFF------------------------------------------F  200 (385)
Q Consensus       173 ----------~~~~~~~~L~~L~l~~~~~~~~~~~~~------------------------------------------~  200 (385)
                                ..+..+++|+++++.++.+.. .+..+                                          .
T Consensus       266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~  344 (570)
T 2z63_A          266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV  344 (570)
T ss_dssp             ETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCC
T ss_pred             cchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccc
Confidence                      012223444444444444331 22222                                          2


Q ss_pred             cCCcccEEEccCccccccC--cccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCC-cc
Q 043347          201 NASKLYYLELAYNSFSGLI--PKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS-SI  277 (385)
Q Consensus       201 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~  277 (385)
                      .+++|++|++++|.+....  +..+..+++|+.|++++|.+...+       ..+..+++|+.|++++|.+.+..+. .+
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~  417 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-------SNFLGLEQLEHLDFQHSNLKQMSEFSVF  417 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE-------EEEETCTTCCEEECTTSEEESCTTSCTT
T ss_pred             cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc-------ccccccCCCCEEEccCCccccccchhhh
Confidence            2334444444444433221  233344455555555555444332       1256677777777777777665553 33


Q ss_pred             cccccceeEEEeeccccCCCCCccccCCCCccEEECcCcccc-CCCccccccCCCCCeEeccCCcccCCChhhhhcCCCc
Q 043347          278 GNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLS-GSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRL  356 (385)
Q Consensus       278 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  356 (385)
                      ... +++++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|++++..+..+..+++|
T Consensus       418 ~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  496 (570)
T 2z63_A          418 LSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  496 (570)
T ss_dssp             TTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             hcC-CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence            444 78888888888888777778888889999999998887 4577788888999999999998887778888888999


Q ss_pred             cEEEccCCcccccCCCcccccccCccccC
Q 043347          357 YKFYLNRNKLSGSIPSCLGDLNSLRILSL  385 (385)
Q Consensus       357 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~i  385 (385)
                      +.|++++|++++..+..+.++++|+.|++
T Consensus       497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  525 (570)
T 2z63_A          497 QVLNMASNQLKSVPDGIFDRLTSLQKIWL  525 (570)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence            99999999988877888888888888764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.7e-38  Score=308.13  Aligned_cols=343  Identities=18%  Similarity=0.306  Sum_probs=253.3

Q ss_pred             CCcccccccceeceeEeecCcccc-----------------CCChhh-hcCCCcccEEEccCCcccCcCCCCccCCCCCc
Q 043347           23 IPASIFNLSSISTGLDFSNNSLTG-----------------SFPDDM-CEGLPRLKGLYVSYNQFKGPIPNNLWHCKELS   84 (385)
Q Consensus        23 ~~~~~~~~~~l~~~L~l~~~~~~~-----------------~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~   84 (385)
                      +|..+.++++++ +|++++|.+++                 .+|..+ |..+++|++|++++|.+.+..+..|..+++|+
T Consensus       440 IP~~l~~L~~L~-~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~  518 (876)
T 4ecn_A          440 ISKAIQRLTKLQ-IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ  518 (876)
T ss_dssp             ECGGGGGCTTCC-EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred             hhHHHhcCCCCC-EEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence            677778888888 78888888885                 277765 44688888888888887777888888888888


Q ss_pred             EEeccccc-ccc-cCCCCccCc-------ccccEEEeecccccCCCCc--ccCCCcCCcEEEecccccccccCccccCCC
Q 043347           85 RVSLSFNQ-FTG-RIPRDLGNS-------TKLKLLYLSFNNLIGEIPQ--EIGSLRNLEILRIDQNNLVGFIPDTIFNMS  153 (385)
Q Consensus        85 ~L~l~~~~-~~~-~~~~~l~~l-------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  153 (385)
                      +|++++|. +.+ .+|..+..+       ++|++|++++|.+. .+|.  .++.+++|+.|++++|.+. .+| .+..++
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~  595 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV  595 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC
Confidence            88888887 665 566544444       48888888888887 7777  7888888888888888877 555 777888


Q ss_pred             CCcEEEccCCcccccCCCCcccCCCCC-CceEEccccccCCCCCcccccCC--cccEEEccCccccccCccc---cc--C
Q 043347          154 TLKTLSLLNNTLSGNLPSSKKLIGLPN-LEGLILGLNNFSGSIPSFFFNAS--KLYYLELAYNSFSGLIPKA---LG--Q  225 (385)
Q Consensus       154 ~L~~l~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~---~~--~  225 (385)
                      +|+.|++++|.+. .+|..  +..+++ |+.|++++|.+. .++..+...+  +|+.|++++|.+.+..+..   +.  .
T Consensus       596 ~L~~L~Ls~N~l~-~lp~~--l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~  671 (876)
T 4ecn_A          596 KLTDLKLDYNQIE-EIPED--FCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK  671 (876)
T ss_dssp             EESEEECCSSCCS-CCCTT--SCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred             cceEEECcCCccc-cchHH--HhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence            8888888888876 55543  556777 888888888877 4555555544  3888888888876543321   11  3


Q ss_pred             CCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccc-------cceeEEEeeccccCCCC
Q 043347          226 LRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLS-------VSVEEIYMYKCNIHGRI  298 (385)
Q Consensus       226 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~~l~~L~l~~~~~~~~~  298 (385)
                      .++|+.|++++|.+...+.      ..+..+++|+.|++++|.+. ..|.......       ++|+.|++++|++. .+
T Consensus       672 ~~~L~~L~Ls~N~L~~lp~------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l  743 (876)
T 4ecn_A          672 GINASTVTLSYNEIQKFPT------ELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL  743 (876)
T ss_dssp             CCCEEEEECCSSCCCSCCH------HHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC
T ss_pred             CCCcCEEEccCCcCCccCH------HHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cc
Confidence            4578888888888876533      23456788888888888877 4444443321       27888888888887 56


Q ss_pred             Ccccc--CCCCccEEECcCccccCCCccccccCCCCCeEeccC------CcccCCChhhhhcCCCccEEEccCCcccccC
Q 043347          299 PKEIG--NLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQN------NKFEGPIPHEFCHFSRLYKFYLNRNKLSGSI  370 (385)
Q Consensus       299 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  370 (385)
                      |..+.  .+++|+.|++++|.+.+ +|..+..+++|+.|++++      |.+.+..|..+..+++|+.|++++|++ +.+
T Consensus       744 p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~I  821 (876)
T 4ecn_A          744 SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKV  821 (876)
T ss_dssp             CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred             hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-Ccc
Confidence            66665  78888888888888885 677788888888888865      667778888888888888888888888 566


Q ss_pred             CCcccccccCccccC
Q 043347          371 PSCLGDLNSLRILSL  385 (385)
Q Consensus       371 ~~~~~~l~~L~~l~i  385 (385)
                      |..+.  ++|+.|+|
T Consensus       822 p~~l~--~~L~~LdL  834 (876)
T 4ecn_A          822 DEKLT--PQLYILDI  834 (876)
T ss_dssp             CSCCC--SSSCEEEC
T ss_pred             CHhhc--CCCCEEEC
Confidence            76554  46766654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.2e-38  Score=304.95  Aligned_cols=137  Identities=20%  Similarity=0.205  Sum_probs=67.1

Q ss_pred             CCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCC
Q 043347            3 LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE   82 (385)
Q Consensus         3 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   82 (385)
                      |.++++|++|++++|.+.+..|..+.++++++ +|++++|.++ .+|...+..+++|++|++++|.+.+..+..|..+++
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  122 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLK-VLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN  122 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCC-EEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred             HhCCCcCcEEECCCCccCccCHHHHhcccCcC-EEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence            34455555555555555544444455555555 4555555555 445444445555555555555554444444555555


Q ss_pred             CcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccC--CCcCCcEEEeccccc
Q 043347           83 LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIG--SLRNLEILRIDQNNL  141 (385)
Q Consensus        83 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~  141 (385)
                      |++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+.  .+++|+.|++++|.+
T Consensus       123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            55555555555444444445555555555555544433322221  234444444444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.1e-38  Score=293.91  Aligned_cols=357  Identities=19%  Similarity=0.207  Sum_probs=265.7

Q ss_pred             CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEE
Q 043347            7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRV   86 (385)
Q Consensus         7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L   86 (385)
                      +++++|++++|.+.+..+..+.++++++ +|+++++.+.+.++...+..+++|++|++++|.+.+..+..|..+++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~-~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQ-FLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCC-EEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCcccc-EEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence            5678888888888766677778888887 688888877656666666778888888888888776667778888888888


Q ss_pred             ecccccccccCCC--CccCcccccEEEeecccccCCCCcc-cCCCcCCcEEEecccccccccCccccCC--CCCcEEEcc
Q 043347           87 SLSFNQFTGRIPR--DLGNSTKLKLLYLSFNNLIGEIPQE-IGSLRNLEILRIDQNNLVGFIPDTIFNM--STLKTLSLL  161 (385)
Q Consensus        87 ~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~l~l~  161 (385)
                      ++++|.+.+..+.  .+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+....+..+..+  .+++.++++
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~  188 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS  188 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence            8888877643333  3777888888888888877665655 6778888888888888776666666655  577788888


Q ss_pred             CCcccccCCCCc------ccCCCCCCceEEccccccCCCCCccccc---CCcccEEEccCcccccc----------Cccc
Q 043347          162 NNTLSGNLPSSK------KLIGLPNLEGLILGLNNFSGSIPSFFFN---ASKLYYLELAYNSFSGL----------IPKA  222 (385)
Q Consensus       162 ~~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~----------~~~~  222 (385)
                      ++.+....+...      .+..+++|++|++++|.+.+..+..+..   .++++.+++++|.....          ....
T Consensus       189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  268 (455)
T 3v47_A          189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT  268 (455)
T ss_dssp             TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred             cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence            777654322110      1224567888888888766444443333   26788888877643221          1111


Q ss_pred             cc--CCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCc
Q 043347          223 LG--QLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPK  300 (385)
Q Consensus       223 ~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~  300 (385)
                      +.  ..++|+.|++++|.+....      ...+..+++|+.|++++|.+.+..+..+..+ +++++|++++|.+.+..+.
T Consensus       269 ~~~~~~~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~  341 (455)
T 3v47_A          269 FKGLEASGVKTCDLSKSKIFALL------KSVFSHFTDLEQLTLAQNEINKIDDNAFWGL-THLLKLNLSQNFLGSIDSR  341 (455)
T ss_dssp             TGGGTTSCCCEEECCSSCCCEEC------TTTTTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECGG
T ss_pred             cccccccCceEEEecCccccccc------hhhcccCCCCCEEECCCCcccccChhHhcCc-ccCCEEECCCCccCCcChh
Confidence            11  2368899999998887653      3467788899999999999887777777776 7899999999998877788


Q ss_pred             cccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCC
Q 043347          301 EIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIP  371 (385)
Q Consensus       301 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  371 (385)
                      .+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus       342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            88889999999999999987778888889999999999999987666677888999999999999887655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-38  Score=300.78  Aligned_cols=363  Identities=21%  Similarity=0.197  Sum_probs=267.0

Q ss_pred             ccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEec
Q 043347            9 LEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSL   88 (385)
Q Consensus         9 l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l   88 (385)
                      .+.++.++..++ .+|..+.  ++++ .|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus         9 ~~~~~c~~~~l~-~ip~~l~--~~l~-~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L   83 (570)
T 2z63_A            9 NITYQCMELNFY-KIPDNLP--FSTK-NLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL   83 (570)
T ss_dssp             TTEEECCSSCCS-SCCSSSC--SSCC-EEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CcEEEeCCCCcc-ccCCCcc--cccc-EEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeC
Confidence            345677776776 6777543  3455 8999999999 677667779999999999999998877888999999999999


Q ss_pred             ccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEeccccccc-ccCccccCCCCCcEEEccCCcccc
Q 043347           89 SFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVG-FIPDTIFNMSTLKTLSLLNNTLSG  167 (385)
Q Consensus        89 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~  167 (385)
                      ++|.+....+..+.++++|++|++.+|.+....+..++.+++|++|++++|.+.. ..|..+..+++|++|++++|.+..
T Consensus        84 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A           84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             TTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred             cCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence            9999987777899999999999999999886555579999999999999999886 358889999999999999998765


Q ss_pred             cCCCCcccCCCCCC----ceEEccccccC---------------------------------------------------
Q 043347          168 NLPSSKKLIGLPNL----EGLILGLNNFS---------------------------------------------------  192 (385)
Q Consensus       168 ~~~~~~~~~~~~~L----~~L~l~~~~~~---------------------------------------------------  192 (385)
                      ..+..  +..+++|    ..++++.|.+.                                                   
T Consensus       164 ~~~~~--~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~  241 (570)
T 2z63_A          164 IYCTD--LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG  241 (570)
T ss_dssp             ECGGG--GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS
T ss_pred             ecHHH--ccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCch
Confidence            43221  2223333    34444443322                                                   


Q ss_pred             ------------------------------CCCCcccccCCcccEEEccCccccccCcccccC-----------------
Q 043347          193 ------------------------------GSIPSFFFNASKLYYLELAYNSFSGLIPKALGQ-----------------  225 (385)
Q Consensus       193 ------------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----------------  225 (385)
                                                    +..+..+..+++|++|++++|.+.. .+..+..                 
T Consensus       242 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~  320 (570)
T 2z63_A          242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFP  320 (570)
T ss_dssp             SCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCC
T ss_pred             hhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccC
Confidence                                          1223345556778888887776653 2333333                 


Q ss_pred             -------------------------CCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCccccc
Q 043347          226 -------------------------LRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNL  280 (385)
Q Consensus       226 -------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  280 (385)
                                               +++|+.|++++|.+.....    ....+..+++|+.|++++|.+.+..+. +...
T Consensus       321 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l  395 (570)
T 2z63_A          321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC----CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGL  395 (570)
T ss_dssp             BCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEE----EEHHHHTCSCCCEEECCSCSEEEEEEE-EETC
T ss_pred             cccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccc----ccccccccCccCEEECCCCcccccccc-cccc
Confidence                                     3334444444443332210    123455667777777777766644333 4444


Q ss_pred             ccceeEEEeeccccCCCCC-ccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCccc-CCChhhhhcCCCccE
Q 043347          281 SVSVEEIYMYKCNIHGRIP-KEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFE-GPIPHEFCHFSRLYK  358 (385)
Q Consensus       281 ~~~l~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~  358 (385)
                       +++++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++ +..|..+..+++|++
T Consensus       396 -~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~  474 (570)
T 2z63_A          396 -EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  474 (570)
T ss_dssp             -TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             -CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence             678888888888776544 45778888899999988888777888888899999999999886 456777888899999


Q ss_pred             EEccCCcccccCCCcccccccCccccC
Q 043347          359 FYLNRNKLSGSIPSCLGDLNSLRILSL  385 (385)
Q Consensus       359 L~l~~~~~~~~~~~~~~~l~~L~~l~i  385 (385)
                      |++++|++++..|..+.++++|+.|++
T Consensus       475 L~l~~n~l~~~~~~~~~~l~~L~~L~l  501 (570)
T 2z63_A          475 LDLSQCQLEQLSPTAFNSLSSLQVLNM  501 (570)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             EECCCCccccCChhhhhcccCCCEEeC
Confidence            999999998888888888888888764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.8e-37  Score=299.73  Aligned_cols=374  Identities=23%  Similarity=0.283  Sum_probs=240.3

Q ss_pred             CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEE
Q 043347            7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRV   86 (385)
Q Consensus         7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L   86 (385)
                      +++++|++++|.+.+..+..+.++++++ +|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLT-SLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL  102 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCS-EEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCc-EEECCCCccC-ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence            5799999999999966666789999999 7999999999 6666666789999999999999986666689999999999


Q ss_pred             ecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCcccc--CCCCCcEEEccCCc
Q 043347           87 SLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIF--NMSTLKTLSLLNNT  164 (385)
Q Consensus        87 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~l~l~~~~  164 (385)
                      ++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+.  .+++|++|++++|.
T Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence            9999999866667899999999999999999888888899999999999999988766555443  45788888888887


Q ss_pred             ccccCCCCcccCC---------------------------CCCCceEEccccccCCCCCcccccCCc--ccEEEccCccc
Q 043347          165 LSGNLPSSKKLIG---------------------------LPNLEGLILGLNNFSGSIPSFFFNASK--LYYLELAYNSF  215 (385)
Q Consensus       165 ~~~~~~~~~~~~~---------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~  215 (385)
                      +.+..+..  +..                           .+.|+.|+++++.+.+..+..+..++.  |++|++++|.+
T Consensus       183 l~~~~~~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l  260 (680)
T 1ziw_A          183 IKEFSPGC--FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL  260 (680)
T ss_dssp             CCCBCTTG--GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred             ccccChhh--hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence            65433321  111                           133444444444433333333333322  44444444444


Q ss_pred             cccCcccccCCCCccEEEecCCcccccchhhh-----------------------hhh----HhhhcccCceEEEccCCC
Q 043347          216 SGLIPKALGQLRNLERLGLQSNYLTSSTSELM-----------------------SLF----SALVNCKSLKVIVLAENP  268 (385)
Q Consensus       216 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------------------~~~----~~~~~~~~L~~L~l~~~~  268 (385)
                      ....+..+..+++|+.|++++|.+....+...                       .+.    ..+..+++|+.|++++|.
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~  340 (680)
T 1ziw_A          261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND  340 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred             CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence            43333344444444444444443332211000                       000    134455666666666665


Q ss_pred             CCCCCCCcccccccc----------------------------eeEEEeeccccCCCCCccccCCCCccEEECcCccccC
Q 043347          269 VDGVLPSSIGNLSVS----------------------------VEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSG  320 (385)
Q Consensus       269 ~~~~~~~~~~~~~~~----------------------------l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  320 (385)
                      +.+..+..+... ++                            ++.|++++|++.+..+.++..+++|+.|++++|.+.+
T Consensus       341 l~~~~~~~~~~l-~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  419 (680)
T 1ziw_A          341 IPGIKSNMFTGL-INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ  419 (680)
T ss_dssp             BCCCCTTTTTTC-TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred             cCCCChhHhccc-cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence            555444433332 33                            3344444444444445555666666666666666654


Q ss_pred             CCc-cccccCCCCCeEeccCCcccC--------------------------CChhhhhcCCCccEEEccCCcccccCCCc
Q 043347          321 SLP-ITLGRLKKLQGLDLQNNKFEG--------------------------PIPHEFCHFSRLYKFYLNRNKLSGSIPSC  373 (385)
Q Consensus       321 ~~~-~~~~~~~~L~~L~l~~~~~~~--------------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  373 (385)
                      .++ ..+..+++|+.|++++|++.+                          ..|..+..+++|+.|++++|+++++.+..
T Consensus       420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~  499 (680)
T 1ziw_A          420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM  499 (680)
T ss_dssp             ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh
Confidence            333 345555555555555554432                          34445556667777777777776666666


Q ss_pred             ccccccCccccC
Q 043347          374 LGDLNSLRILSL  385 (385)
Q Consensus       374 ~~~l~~L~~l~i  385 (385)
                      +.++++|+.|++
T Consensus       500 ~~~l~~L~~L~L  511 (680)
T 1ziw_A          500 LEGLEKLEILDL  511 (680)
T ss_dssp             TTTCTTCCEEEC
T ss_pred             hccccccCEEeC
Confidence            667777766653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.3e-38  Score=305.37  Aligned_cols=364  Identities=20%  Similarity=0.272  Sum_probs=298.8

Q ss_pred             CcccEEEecCccccCCCCcccccccceeceeEe-ecCccccC--------------------------------------
Q 043347            7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDF-SNNSLTGS--------------------------------------   47 (385)
Q Consensus         7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l-~~~~~~~~--------------------------------------   47 (385)
                      .+++.|+|+++.+.+.+|+++.+++.++ +|++ ++|.+.+.                                      
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~-~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELK-VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCC-EEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCcCchHHhccccce-EeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            5789999999999999999999999999 7999 66644322                                      


Q ss_pred             --------------------------------------CChhhhcCCCcccEEEccCCcccC-----------------c
Q 043347           48 --------------------------------------FPDDMCEGLPRLKGLYVSYNQFKG-----------------P   72 (385)
Q Consensus        48 --------------------------------------~~~~~~~~~~~L~~L~l~~~~~~~-----------------~   72 (385)
                                                            +|..+ ..+++|++|++++|.+.+                 .
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHH-hcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                                                  56554 479999999999999987                 2


Q ss_pred             CCCCcc--CCCCCcEEecccccccccCCCCccCcccccEEEeeccc-ccC-CCCcccCCC-------cCCcEEEeccccc
Q 043347           73 IPNNLW--HCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNN-LIG-EIPQEIGSL-------RNLEILRIDQNNL  141 (385)
Q Consensus        73 ~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~l-------~~L~~L~l~~~~~  141 (385)
                      +|..+.  .+++|++|++++|.+.+.+|..+.++++|++|++++|. +.+ .+|..++.+       ++|+.|++++|.+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            777777  99999999999999888899999999999999999998 765 567655544       4999999999999


Q ss_pred             ccccCc--cccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCc-ccEEEccCcccccc
Q 043347          142 VGFIPD--TIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASK-LYYLELAYNSFSGL  218 (385)
Q Consensus       142 ~~~~~~--~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~  218 (385)
                      . .+|.  .+..+++|+.|++++|.+. .+|   .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+. .
T Consensus       561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp---~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~  633 (876)
T 4ecn_A          561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE---AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y  633 (876)
T ss_dssp             C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC---CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred             C-ccCChhhhhcCCCCCEEECCCCCcc-cch---hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence            8 6777  8999999999999999987 666   3778999999999999988 66777888888 999999999988 4


Q ss_pred             CcccccCCC--CccEEEecCCcccccchhhhhhhHhhh--cccCceEEEccCCCCCCCCCCcccccccceeEEEeecccc
Q 043347          219 IPKALGQLR--NLERLGLQSNYLTSSTSELMSLFSALV--NCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNI  294 (385)
Q Consensus       219 ~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~  294 (385)
                      .+..+...+  +|+.|++++|.+....+.+.   ..+.  .+++|+.|++++|.+. ..|..+....++++.|++++|++
T Consensus       634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~---~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L  709 (876)
T 4ecn_A          634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS---CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM  709 (876)
T ss_dssp             CCSCCCTTCSSCEEEEECCSSCTTTTSSSCS---SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC
T ss_pred             CchhhhccccCCCCEEECcCCcCCCccccch---hhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC
Confidence            566666554  49999999998876433211   1222  3458999999999998 45555443337999999999999


Q ss_pred             CCCCCcccc-------CCCCccEEECcCccccCCCccccc--cCCCCCeEeccCCcccCCChhhhhcCCCccEEEccC--
Q 043347          295 HGRIPKEIG-------NLINLTKLSLGYNNLSGSLPITLG--RLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNR--  363 (385)
Q Consensus       295 ~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~--  363 (385)
                      .......+.       .+++|++|++++|.+. .+|..+.  .+++|+.|++++|.+++ +|..+..+++|+.|++++  
T Consensus       710 ~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~  787 (876)
T 4ecn_A          710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR  787 (876)
T ss_dssp             SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred             CccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence            843333333       2349999999999998 7788886  89999999999999996 788888999999999976  


Q ss_pred             ----CcccccCCCcccccccCccccC
Q 043347          364 ----NKLSGSIPSCLGDLNSLRILSL  385 (385)
Q Consensus       364 ----~~~~~~~~~~~~~l~~L~~l~i  385 (385)
                          |++.+.+|..+.++++|+.|++
T Consensus       788 ~ls~N~l~~~ip~~l~~L~~L~~L~L  813 (876)
T 4ecn_A          788 DAEGNRILRQWPTGITTCPSLIQLQI  813 (876)
T ss_dssp             CTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred             CcccccccccChHHHhcCCCCCEEEC
Confidence                7788889999999999999875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.6e-37  Score=286.01  Aligned_cols=369  Identities=21%  Similarity=0.207  Sum_probs=294.6

Q ss_pred             cEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCc-CCCCccCCCCCcEEec
Q 043347           10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGP-IPNNLWHCKELSRVSL   88 (385)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l   88 (385)
                      +.++.+++.++ .+|. +  .++++ +|++++|.++ .++...+..+++|++|++++|.+.+. .+..|..+++|++|++
T Consensus        13 ~~~~c~~~~l~-~lp~-l--~~~l~-~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L--PAHVN-YVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL   86 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C--CTTCC-EEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred             cccCcCCCCcc-cCCC-C--CCccC-EEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence            45677777776 6665 2  24566 8999999998 55555566899999999999988643 4667899999999999


Q ss_pred             ccccccccCCCCccCcccccEEEeecccccCCCCcc--cCCCcCCcEEEecccccccccCcc-ccCCCCCcEEEccCCcc
Q 043347           89 SFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQE--IGSLRNLEILRIDQNNLVGFIPDT-IFNMSTLKTLSLLNNTL  165 (385)
Q Consensus        89 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~  165 (385)
                      ++|.+....|..+.++++|++|++++|.+.+..+..  +..+++|++|++++|.+....+.. +..+++|++|++++|.+
T Consensus        87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            999998777889999999999999999887644444  888999999999999998776665 78999999999999998


Q ss_pred             cccCCCCcccCCCCCCceEEccccccCCCCCcc--------cccCCcccEEEccCccccccCcccccC---CCCccEEEe
Q 043347          166 SGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSF--------FFNASKLYYLELAYNSFSGLIPKALGQ---LRNLERLGL  234 (385)
Q Consensus       166 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l  234 (385)
                      .+..+....-.....++.++++++.+.......        +..+++|++|++++|.+.+..+..+..   .++|+.|++
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            765554322222368899999999887544333        235678999999999887655554433   388999999


Q ss_pred             cCCcccccchhhhh----hhHhhh--cccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCc
Q 043347          235 QSNYLTSSTSELMS----LFSALV--NCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINL  308 (385)
Q Consensus       235 ~~~~~~~~~~~~~~----~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L  308 (385)
                      +++...........    ....+.  ..++|+.|++++|.+.+..+..+..+ +++++|++++|++.+..+..+..+++|
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L  325 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHL  325 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccC
Confidence            98754332110000    001111  24789999999999998888888777 899999999999998888889999999


Q ss_pred             cEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccccccCccccC
Q 043347          309 TKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL  385 (385)
Q Consensus       309 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~i  385 (385)
                      ++|++++|.+.+..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus       326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  402 (455)
T 3v47_A          326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWL  402 (455)
T ss_dssp             CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEc
Confidence            99999999998777888999999999999999999888889999999999999999999877778889999998865

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-37  Score=304.25  Aligned_cols=280  Identities=20%  Similarity=0.189  Sum_probs=188.1

Q ss_pred             cCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcE
Q 043347            6 LAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSR   85 (385)
Q Consensus         6 ~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   85 (385)
                      .+++++|++++|.+.+..+.++.++.+++ +|++++|...+.++...+..+++|++|++++|.+.+..+..|..+++|++
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~-~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQ-LLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCS-EEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCe-EEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            36789999999999877788889999998 79999996555777777778999999999999998778889999999999


Q ss_pred             EecccccccccCCCC--ccCcccccEEEeecccccCCCC-cccCCCcCCcEEEecccccccccCccccCC--CCCcEEEc
Q 043347           86 VSLSFNQFTGRIPRD--LGNSTKLKLLYLSFNNLIGEIP-QEIGSLRNLEILRIDQNNLVGFIPDTIFNM--STLKTLSL  160 (385)
Q Consensus        86 L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~l~l  160 (385)
                      |++++|.+.+..+..  +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+....+..+..+  ++|+.+++
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L  181 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL  181 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence            999999887655554  8889999999999998876544 568899999999999988876655555544  55555555


Q ss_pred             cCCcccccCCCCcccCC---------------------------------------------------------------
Q 043347          161 LNNTLSGNLPSSKKLIG---------------------------------------------------------------  177 (385)
Q Consensus       161 ~~~~~~~~~~~~~~~~~---------------------------------------------------------------  177 (385)
                      +.|.+.+..+..  +..                                                               
T Consensus       182 ~~n~l~~~~~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~  259 (844)
T 3j0a_A          182 AANSLYSRVSVD--WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT  259 (844)
T ss_dssp             CCSBSCCCCCCC--CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred             CCCccccccccc--hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence            555443322211  111                                                               


Q ss_pred             -----CCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHh
Q 043347          178 -----LPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSA  252 (385)
Q Consensus       178 -----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  252 (385)
                           .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....      ...
T Consensus       260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~  333 (844)
T 3j0a_A          260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY------SSN  333 (844)
T ss_dssp             TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC------SCS
T ss_pred             hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC------HHH
Confidence                 134555555555444444444555555555555555555444455555555556665555554432      134


Q ss_pred             hhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccC
Q 043347          253 LVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIH  295 (385)
Q Consensus       253 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~  295 (385)
                      +..+++|+.|++++|.+....+..+..+ ++++.|++++|.+.
T Consensus       334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          334 FYGLPKVAYIDLQKNHIAIIQDQTFKFL-EKLQTLDLRDNALT  375 (844)
T ss_dssp             CSSCTTCCEEECCSCCCCCCCSSCSCSC-CCCCEEEEETCCSC
T ss_pred             hcCCCCCCEEECCCCCCCccChhhhcCC-CCCCEEECCCCCCC
Confidence            5555566666666665554444444444 55666666555543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.7e-36  Score=285.78  Aligned_cols=367  Identities=21%  Similarity=0.205  Sum_probs=222.3

Q ss_pred             CCCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCc-CCCCccCC
Q 043347            2 ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGP-IPNNLWHC   80 (385)
Q Consensus         2 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~   80 (385)
                      +|.++++|++|++++|.+.+..+.++.++++++ +|++++|.++ .++...+..+++|++|++++|.+.+. .+..+..+
T Consensus        45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~-~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l  122 (549)
T 2z81_A           45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLE-HLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL  122 (549)
T ss_dssp             TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCC-EEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred             hhhcCCcccEEECCCCCcCccChhhccccccCC-EEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence            356666666666666666655555666666666 5777766666 55555455666777777766666542 34456666


Q ss_pred             CCCcEEecccccccccCC-CCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEE
Q 043347           81 KELSRVSLSFNQFTGRIP-RDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLS  159 (385)
Q Consensus        81 ~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~  159 (385)
                      ++|++|++++|...+..+ ..+.++++|++|++++|.+.+..|..+..+++|+.|+++++.........+..+++|++++
T Consensus       123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  202 (549)
T 2z81_A          123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE  202 (549)
T ss_dssp             TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEE
T ss_pred             CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEE
Confidence            677777776665322333 4566667777777776666655566666555555555555544322111123455666666


Q ss_pred             ccCCcccccCC-CCccc----------------------------------------------------------CCC--
Q 043347          160 LLNNTLSGNLP-SSKKL----------------------------------------------------------IGL--  178 (385)
Q Consensus       160 l~~~~~~~~~~-~~~~~----------------------------------------------------------~~~--  178 (385)
                      +++|.+.+... .....                                                          ..+  
T Consensus       203 L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~  282 (549)
T 2z81_A          203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK  282 (549)
T ss_dssp             EESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT
T ss_pred             ccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc
Confidence            66655543100 00000                                                          111  


Q ss_pred             ---------------------------CCCceEEccccccCCCCCcccccCCcccEEEccCccccccCc---ccccCCCC
Q 043347          179 ---------------------------PNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIP---KALGQLRN  228 (385)
Q Consensus       179 ---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~  228 (385)
                                                 ++|+.++++++.+.......+..+++|++|++++|.+.+..+   ..++.+++
T Consensus       283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~  362 (549)
T 2z81_A          283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS  362 (549)
T ss_dssp             CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred             cccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhcccc
Confidence                                       223333333333331111222456777777777777764332   23566777


Q ss_pred             ccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCc
Q 043347          229 LERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINL  308 (385)
Q Consensus       229 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L  308 (385)
                      |+.|++++|.++..+.    ....+..+++|+.|++++|.+. ..|..+... +++++|++++|++.. ++..+  .++|
T Consensus       363 L~~L~Ls~N~l~~~~~----~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~-~~L~~L~Ls~N~l~~-l~~~~--~~~L  433 (549)
T 2z81_A          363 LQTLVLSQNHLRSMQK----TGEILLTLKNLTSLDISRNTFH-PMPDSCQWP-EKMRFLNLSSTGIRV-VKTCI--PQTL  433 (549)
T ss_dssp             CCEEECTTSCCCCHHH----HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC-TTCCEEECTTSCCSC-CCTTS--CTTC
T ss_pred             CcEEEccCCccccccc----chhhhhcCCCCCEEECCCCCCc-cCChhhccc-ccccEEECCCCCccc-ccchh--cCCc
Confidence            8888888877765422    1134677788888888888777 455555544 678888888887763 23222  2477


Q ss_pred             cEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccccccCccccC
Q 043347          309 TKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL  385 (385)
Q Consensus       309 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~i  385 (385)
                      +.|++++|.+++..    ..+++|+.|++++|+++ .+|. ...+++|+.|++++|++++..|..+..+++|+.|++
T Consensus       434 ~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  504 (549)
T 2z81_A          434 EVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL  504 (549)
T ss_dssp             SEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred             eEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEe
Confidence            77777777776432    46788888888888887 4554 356888888888888888777777888888887764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2e-36  Score=297.99  Aligned_cols=371  Identities=20%  Similarity=0.237  Sum_probs=260.4

Q ss_pred             CCCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCCh-hhhcCCCcccEEEccCCcccCcCC-CCccC
Q 043347            2 ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPD-DMCEGLPRLKGLYVSYNQFKGPIP-NNLWH   79 (385)
Q Consensus         2 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~   79 (385)
                      +|.++++|++|++++|.+.+..|..+.++++++ +|++++|.+++.++. .++..+++|++|++++|.+.+..+ ..|..
T Consensus        68 ~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~  146 (844)
T 3j0a_A           68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF-ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK  146 (844)
T ss_dssp             TTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC-CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred             HhcCCCCCCEEECCCCcCcccCHhHccCCcccC-EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence            478899999999999999877788888999998 799999988865554 346688999999999998876544 46888


Q ss_pred             CCCCcEEecccccccccCCCCccCc--cc------------------------------ccEEEeecccccCCCCcccC-
Q 043347           80 CKELSRVSLSFNQFTGRIPRDLGNS--TK------------------------------LKLLYLSFNNLIGEIPQEIG-  126 (385)
Q Consensus        80 ~~~L~~L~l~~~~~~~~~~~~l~~l--~~------------------------------L~~L~l~~~~~~~~~~~~~~-  126 (385)
                      +++|++|++++|.+.+..+..+..+  ++                              |++|++++|.+....+..+. 
T Consensus       147 L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  226 (844)
T 3j0a_A          147 LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN  226 (844)
T ss_dssp             CSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred             CCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHh
Confidence            9999999998887765544444333  33                              55555555533322222111 


Q ss_pred             -----------------------------------C--CcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccC
Q 043347          127 -----------------------------------S--LRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNL  169 (385)
Q Consensus       127 -----------------------------------~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~  169 (385)
                                                         .  .++|+.|++++|.+....+..+..+++|+.|++++|.+....
T Consensus       227 ~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~  306 (844)
T 3j0a_A          227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA  306 (844)
T ss_dssp             TSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC
T ss_pred             hcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC
Confidence                                               0  145666777666666666666777777778887777776554


Q ss_pred             CCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccch-----
Q 043347          170 PSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTS-----  244 (385)
Q Consensus       170 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----  244 (385)
                      +..  +..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++..+.     
T Consensus       307 ~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~  384 (844)
T 3j0a_A          307 DEA--FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP  384 (844)
T ss_dssp             TTT--TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCS
T ss_pred             hHH--hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcc
Confidence            432  6677788888888887776666777777888888888877766666667777777777777776554221     


Q ss_pred             --------------hh---------------hhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccC
Q 043347          245 --------------EL---------------MSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIH  295 (385)
Q Consensus       245 --------------~~---------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~  295 (385)
                                    ..               .+....+..+++|+.|++++|.+.+..+.......++++.|++++|.+.
T Consensus       385 ~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~  464 (844)
T 3j0a_A          385 DIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ  464 (844)
T ss_dssp             EEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCS
T ss_pred             hhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccc
Confidence                          00               0011224467778888888887765444332222367888888888775


Q ss_pred             C-----CCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccC
Q 043347          296 G-----RIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSI  370 (385)
Q Consensus       296 ~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  370 (385)
                      .     ..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+.  ++|+.|++++|++++..
T Consensus       465 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~  542 (844)
T 3j0a_A          465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPN  542 (844)
T ss_dssp             SSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCC
T ss_pred             cccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCC
Confidence            3     3345577788888999999888877777788888999999999988865555543  78889999999888888


Q ss_pred             CCccccc
Q 043347          371 PSCLGDL  377 (385)
Q Consensus       371 ~~~~~~l  377 (385)
                      |..+.++
T Consensus       543 ~~~~~~L  549 (844)
T 3j0a_A          543 PDVFVSL  549 (844)
T ss_dssp             SCCCSSC
T ss_pred             hhHhCCc
Confidence            8776543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.2e-36  Score=279.21  Aligned_cols=344  Identities=22%  Similarity=0.226  Sum_probs=197.6

Q ss_pred             CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEE
Q 043347            7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRV   86 (385)
Q Consensus         7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L   86 (385)
                      +++++|++++|.+.+..+.++.++++++ +|++++|.++ .+++..+..+++|++|++++|.+.+ ++..  .+++|++|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~-~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L   95 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLR-ILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHL   95 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCC-EEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEE
T ss_pred             ccccEEECCCCcccccChhhcccccccc-EEecCCCccC-CcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEE
Confidence            5677777777777655555667777777 5777777777 4444444567777777777777663 3323  66777777


Q ss_pred             ecccccccc-cCCCCccCcccccEEEeecccccCCCCcccCCCcCC--cEEEeccccc--ccccCccccC----------
Q 043347           87 SLSFNQFTG-RIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNL--EILRIDQNNL--VGFIPDTIFN----------  151 (385)
Q Consensus        87 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~----------  151 (385)
                      ++++|.+.+ ..|..++++++|++|++++|.+..   ..+..+++|  +.|++++|.+  ....+..+..          
T Consensus        96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l  172 (520)
T 2z7x_B           96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF  172 (520)
T ss_dssp             ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred             eccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence            777777664 345667777777777777776653   345556666  7777777766  3333333222          


Q ss_pred             ----------------CC---------------------------------------------------------CCcEE
Q 043347          152 ----------------MS---------------------------------------------------------TLKTL  158 (385)
Q Consensus       152 ----------------l~---------------------------------------------------------~L~~l  158 (385)
                                      ++                                                         +|+.+
T Consensus       173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L  252 (520)
T 2z7x_B          173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF  252 (520)
T ss_dssp             CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred             ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence                            11                                                         34444


Q ss_pred             EccCCcccccCCCCcc---cCCCCCCceEEcccccc--------------------------CCCCCcccccCCcccEEE
Q 043347          159 SLLNNTLSGNLPSSKK---LIGLPNLEGLILGLNNF--------------------------SGSIPSFFFNASKLYYLE  209 (385)
Q Consensus       159 ~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~--------------------------~~~~~~~~~~~~~L~~L~  209 (385)
                      ++++|.+.+.+|....   ...++.|+.++++.+.+                          ....  ....+++|++|+
T Consensus       253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~  330 (520)
T 2z7x_B          253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLD  330 (520)
T ss_dssp             EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred             EeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEE
Confidence            4444443333332210   02333333333333222                          1100  014556666666


Q ss_pred             ccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCc-ccccccceeEEE
Q 043347          210 LAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSS-IGNLSVSVEEIY  288 (385)
Q Consensus       210 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~l~~L~  288 (385)
                      +++|.+.+..+..+..+++|+.|++++|.+...+.    .+..+..+++|+.|++++|.+.+..|.. +... +++++|+
T Consensus       331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l-~~L~~L~  405 (520)
T 2z7x_B          331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSK----IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT-KSLLSLN  405 (520)
T ss_dssp             CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH----HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC-TTCCEEE
T ss_pred             eECCccChhhhhhhccCCCCCEEEccCCccCcccc----chHHHhhCCCCCEEECCCCcCCcccccchhccC-ccCCEEE
Confidence            66666665555566666667777776666654322    3345666667777777776666534433 2322 5667777


Q ss_pred             eeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccc
Q 043347          289 MYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSG  368 (385)
Q Consensus       289 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  368 (385)
                      +++|++.+..+..+.  ++|+.|++++|.+. .+|..+..+++|+.|++++|+++...+..+..+++|++|++++|++++
T Consensus       406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             CCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence            777666554444332  46777777777666 555555566677777777776663222235566677777777766653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.1e-35  Score=278.67  Aligned_cols=344  Identities=20%  Similarity=0.227  Sum_probs=203.3

Q ss_pred             cCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcE
Q 043347            6 LAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSR   85 (385)
Q Consensus         6 ~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   85 (385)
                      |...++++++++.++ .+|..+.  ++++ .|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++
T Consensus        30 ~~~~~~l~ls~~~L~-~ip~~~~--~~L~-~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           30 NELESMVDYSNRNLT-HVPKDLP--PRTK-ALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             ---CCEEECTTSCCC-SCCTTSC--TTCC-EEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             cCCCcEEEcCCCCCc-cCCCCCC--CCcC-EEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence            445577888888777 5666553  5555 6888888887 666656667888888888888777666777778888888


Q ss_pred             EecccccccccCCCCccCcccccEEEeecccccC-CCCcccCCCcCCcEEEecccccccccCccccCCCCC--cEEEccC
Q 043347           86 VSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIG-EIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTL--KTLSLLN  162 (385)
Q Consensus        86 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~l~l~~  162 (385)
                      |++++|.+. .+|..  .+++|++|++++|.+.+ ..|..++.+++|++|++++|.+...   .+..+++|  +.+++++
T Consensus       105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL  178 (562)
T ss_dssp             EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred             EECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence            888888776 45544  67788888888877765 2346777778888888877776542   23334444  6666666


Q ss_pred             Ccc--cccCCCCcc------------------------cCCC--------------------------------------
Q 043347          163 NTL--SGNLPSSKK------------------------LIGL--------------------------------------  178 (385)
Q Consensus       163 ~~~--~~~~~~~~~------------------------~~~~--------------------------------------  178 (385)
                      |.+  .+..+....                        +..+                                      
T Consensus       179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH  258 (562)
T ss_dssp             SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred             ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence            655  222111100                        0001                                      


Q ss_pred             -----------------CCCceEEccccccCCCCCccc------------------------------------------
Q 043347          179 -----------------PNLEGLILGLNNFSGSIPSFF------------------------------------------  199 (385)
Q Consensus       179 -----------------~~L~~L~l~~~~~~~~~~~~~------------------------------------------  199 (385)
                                       ++|++|++++|.+.+..+..+                                          
T Consensus       259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l  338 (562)
T 3a79_B          259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI  338 (562)
T ss_dssp             EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred             CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence                             144445555444432222211                                          


Q ss_pred             -----------ccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCC
Q 043347          200 -----------FNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENP  268 (385)
Q Consensus       200 -----------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  268 (385)
                                 ..+++|++|++++|.+.+..+..+..+++|+.|++++|.++..+.    ....+..+++|+.|++++|.
T Consensus       339 ~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~~l~~L~~L~l~~N~  414 (562)
T 3a79_B          339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK----VALMTKNMSSLETLDVSLNS  414 (562)
T ss_dssp             ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH----HHHTTTTCTTCCEEECTTSC
T ss_pred             cCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc----chhhhcCCCCCCEEECCCCc
Confidence                       345566666666666655555556666666666666666554322    23345566666666666666


Q ss_pred             CCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChh
Q 043347          269 VDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPH  348 (385)
Q Consensus       269 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  348 (385)
                      +.+..|.......+++++|++++|++.+..+..+.  ++|+.|++++|.++ .+|..+..+++|+.|++++|+++. +|.
T Consensus       415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~  490 (562)
T 3a79_B          415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPD  490 (562)
T ss_dssp             CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCT
T ss_pred             CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCH
Confidence            65533433222225666666666666544433332  46666666666665 455545566666666666666663 333


Q ss_pred             h-hhcCCCccEEEccCCcccc
Q 043347          349 E-FCHFSRLYKFYLNRNKLSG  368 (385)
Q Consensus       349 ~-~~~~~~L~~L~l~~~~~~~  368 (385)
                      . +..+++|+.|++++|++.+
T Consensus       491 ~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          491 GVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             TSTTTCTTCCCEECCSCCBCC
T ss_pred             HHHhcCCCCCEEEecCCCcCC
Confidence            3 5556666666666666543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.4e-34  Score=266.76  Aligned_cols=324  Identities=27%  Similarity=0.376  Sum_probs=159.2

Q ss_pred             cCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcE
Q 043347            6 LAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSR   85 (385)
Q Consensus         6 ~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   85 (385)
                      ++++++|+++++.+. .++ .+..+++++ +|++++|.++ .++.  +..+++|++|++++|.+.+..+  +..+++|++
T Consensus        45 l~~l~~L~l~~~~i~-~l~-~~~~l~~L~-~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-SID-GVEYLNNLT-QINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHTCCEEECCSSCCC-CCT-TGGGCTTCC-EEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hccccEEecCCCCCc-cCc-chhhhcCCC-EEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            455666666666554 333 355555555 5666666665 4443  3456666666666665553322  556666666


Q ss_pred             EecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEE---------------------ecccccccc
Q 043347           86 VSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILR---------------------IDQNNLVGF  144 (385)
Q Consensus        86 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~---------------------l~~~~~~~~  144 (385)
                      |++++|.+.+. + .+..+++|++|++++|.+.+ .+ .+..+++|+.|+                     +++|.+...
T Consensus       117 L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (466)
T 1o6v_A          117 LTLFNNQITDI-D-PLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI  192 (466)
T ss_dssp             EECCSSCCCCC-G-GGTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             EECCCCCCCCC-h-HHcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC
Confidence            66666655532 2 25556666666666665542 22 244455555555                     444444322


Q ss_pred             cCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCccccc
Q 043347          145 IPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALG  224 (385)
Q Consensus       145 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  224 (385)
                        ..+..+++|+.|++++|.+.+..+    +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+....+  +.
T Consensus       193 --~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~  262 (466)
T 1o6v_A          193 --SVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS  262 (466)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             --hhhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence              223444444444444444432211    23344455555554444321  234444555555555554443222  44


Q ss_pred             CCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccC
Q 043347          225 QLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGN  304 (385)
Q Consensus       225 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~  304 (385)
                      .+++|+.|++++|.+...+        .+..+++|+.|++++|.+.+..+  +..+ ++++.|++++|++.+..+  +..
T Consensus       263 ~l~~L~~L~l~~n~l~~~~--------~~~~l~~L~~L~L~~n~l~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--~~~  329 (466)
T 1o6v_A          263 GLTKLTELKLGANQISNIS--------PLAGLTALTNLELNENQLEDISP--ISNL-KNLTYLTLYFNNISDISP--VSS  329 (466)
T ss_dssp             TCTTCSEEECCSSCCCCCG--------GGTTCTTCSEEECCSSCCSCCGG--GGGC-TTCSEEECCSSCCSCCGG--GGG
T ss_pred             cCCCCCEEECCCCccCccc--------cccCCCccCeEEcCCCcccCchh--hcCC-CCCCEEECcCCcCCCchh--hcc
Confidence            4455555555555444321        13444555555555555543322  2222 455555555555543332  344


Q ss_pred             CCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccc
Q 043347          305 LINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSG  368 (385)
Q Consensus       305 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  368 (385)
                      +++|+.|++++|.+.+.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       330 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          330 LTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            55555555555555432  234455555555555555554333  4445555555555555543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.5e-35  Score=271.95  Aligned_cols=320  Identities=20%  Similarity=0.188  Sum_probs=223.9

Q ss_pred             cEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecc
Q 043347           10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLS   89 (385)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~   89 (385)
                      +.++.+++.++ .+|..+.  ..++ .|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~-~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~   88 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETR-LLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR   88 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCS-EEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCc-EEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence            46666666666 5666543  3444 6888888777 5555555677888888888877776667777778888888888


Q ss_pred             cccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccC
Q 043347           90 FNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNL  169 (385)
Q Consensus        90 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~  169 (385)
                      +|.+....+..+.++++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            77777444445677788888888877777666667777788888888877777666667777778888888777765331


Q ss_pred             CCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhh
Q 043347          170 PSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSL  249 (385)
Q Consensus       170 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  249 (385)
                      +  ..+..+++|+.|+++++.+.......+..+++|++|++++|...+..+.......+|+.|++++|.++..+.     
T Consensus       169 ~--~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----  241 (477)
T 2id5_A          169 T--EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY-----  241 (477)
T ss_dssp             H--HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH-----
T ss_pred             h--hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH-----
Confidence            1  225667777888887777766556667777778888877766544444444444577778887777765432     


Q ss_pred             hHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccC
Q 043347          250 FSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRL  329 (385)
Q Consensus       250 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  329 (385)
                       ..+..+++|+.|++++|.+.+..+..+..+ +++++|++++|++.+..+.++..+++|+.|++++|.+++..+..+..+
T Consensus       242 -~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  319 (477)
T 2id5_A          242 -LAVRHLVYLRFLNLSYNPISTIEGSMLHEL-LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV  319 (477)
T ss_dssp             -HHHTTCTTCCEEECCSSCCCEECTTSCTTC-TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred             -HHhcCccccCeeECCCCcCCccChhhcccc-ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence             356677777777777777776655555555 677777777777776666777777777777777777775555566677


Q ss_pred             CCCCeEeccCCccc
Q 043347          330 KKLQGLDLQNNKFE  343 (385)
Q Consensus       330 ~~L~~L~l~~~~~~  343 (385)
                      ++|+.|++++|.+.
T Consensus       320 ~~L~~L~l~~N~l~  333 (477)
T 2id5_A          320 GNLETLILDSNPLA  333 (477)
T ss_dssp             GGCCEEECCSSCEE
T ss_pred             cccCEEEccCCCcc
Confidence            77777777777765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.1e-35  Score=270.84  Aligned_cols=320  Identities=18%  Similarity=0.159  Sum_probs=275.7

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN  115 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  115 (385)
                      .++.++..++ .+|..+.   +++++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+.++++|++|++++|
T Consensus        15 ~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             EEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            6888888888 8887663   58999999999999887889999999999999999998777889999999999999999


Q ss_pred             cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC
Q 043347          116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI  195 (385)
Q Consensus       116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  195 (385)
                      .+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..  +..+++|++|++++|.+....
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA--FSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS--STTCTTCCEEEEESCCCSSCC
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh--ccCCCCCCEEECCCCcCcccC
Confidence            988666667889999999999999998888888999999999999999887654433  778999999999999988776


Q ss_pred             CcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCC
Q 043347          196 PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS  275 (385)
Q Consensus       196 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  275 (385)
                      ...+..+++|+.|++++|.+....+..+..+++|+.|++++|......      ........+|+.|++++|.+.+..+.
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~n~l~~~~~~  242 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM------TPNCLYGLNLTSLSITHCNLTAVPYL  242 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE------CTTTTTTCCCSEEEEESSCCCSCCHH
T ss_pred             hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc------CcccccCccccEEECcCCcccccCHH
Confidence            777889999999999999998777778899999999999997654332      12333445899999999998865444


Q ss_pred             cccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCC
Q 043347          276 SIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSR  355 (385)
Q Consensus       276 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  355 (385)
                      .+... ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..+..+..+++
T Consensus       243 ~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  321 (477)
T 2id5_A          243 AVRHL-VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN  321 (477)
T ss_dssp             HHTTC-TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred             HhcCc-cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence            55555 89999999999998877888899999999999999999888889999999999999999999777777888999


Q ss_pred             ccEEEccCCcccc
Q 043347          356 LYKFYLNRNKLSG  368 (385)
Q Consensus       356 L~~L~l~~~~~~~  368 (385)
                      |+.|++++|++..
T Consensus       322 L~~L~l~~N~l~c  334 (477)
T 2id5_A          322 LETLILDSNPLAC  334 (477)
T ss_dssp             CCEEECCSSCEEC
T ss_pred             cCEEEccCCCccC
Confidence            9999999998764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.3e-34  Score=262.88  Aligned_cols=307  Identities=28%  Similarity=0.385  Sum_probs=251.1

Q ss_pred             CCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCC
Q 043347            3 LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE   82 (385)
Q Consensus         3 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   82 (385)
                      +..+++|++|++++|.+.+ ++. +.++++++ +|+++++.++ .++.  +..+++|++|++++|.+.+..  .+..+++
T Consensus        64 ~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~-~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~  135 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLTD-ITP-LKNLTKLV-DILMNNNQIA-DITP--LANLTNLTGLTLFNNQITDID--PLKNLTN  135 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCC-EEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTT
T ss_pred             hhhhcCCCEEECCCCccCC-chh-hhccccCC-EEECCCCccc-cChh--hcCCCCCCEEECCCCCCCCCh--HHcCCCC
Confidence            4568899999999998884 444 78888888 7999999888 5555  558899999999998887543  2788888


Q ss_pred             CcEEecccccccccC-------------------CCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEeccccccc
Q 043347           83 LSRVSLSFNQFTGRI-------------------PRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVG  143 (385)
Q Consensus        83 L~~L~l~~~~~~~~~-------------------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  143 (385)
                      |++|++++|.+....                   ...+.++++|++|++++|.+...  ..+..+++|+.|++++|.+..
T Consensus       136 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~  213 (466)
T 1o6v_A          136 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD  213 (466)
T ss_dssp             CSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             CCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccc
Confidence            888888888765311                   11256678888999988887633  357889999999999999876


Q ss_pred             ccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccc
Q 043347          144 FIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKAL  223 (385)
Q Consensus       144 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  223 (385)
                      ..+  +..+++|+.|++++|.+...    ..+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+....+  +
T Consensus       214 ~~~--~~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~  283 (466)
T 1o6v_A          214 ITP--LGILTNLDELSLNGNQLKDI----GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L  283 (466)
T ss_dssp             CGG--GGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--G
T ss_pred             ccc--ccccCCCCEEECCCCCcccc----hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--c
Confidence            544  67899999999999988643    236789999999999999875443  7889999999999999886543  7


Q ss_pred             cCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCcccc
Q 043347          224 GQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIG  303 (385)
Q Consensus       224 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~  303 (385)
                      ..+++|+.|++++|.+....        .+..+++|+.|++++|.+.+..+  +..+ +++++|++++|++.+.  ..+.
T Consensus       284 ~~l~~L~~L~L~~n~l~~~~--------~~~~l~~L~~L~L~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~--~~l~  350 (466)
T 1o6v_A          284 AGLTALTNLELNENQLEDIS--------PISNLKNLTYLTLYFNNISDISP--VSSL-TKLQRLFFYNNKVSDV--SSLA  350 (466)
T ss_dssp             TTCTTCSEEECCSSCCSCCG--------GGGGCTTCSEEECCSSCCSCCGG--GGGC-TTCCEEECCSSCCCCC--GGGT
T ss_pred             cCCCccCeEEcCCCcccCch--------hhcCCCCCCEEECcCCcCCCchh--hccC-ccCCEeECCCCccCCc--hhhc
Confidence            88999999999999988653        27789999999999999987765  4444 8999999999999864  4688


Q ss_pred             CCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccC
Q 043347          304 NLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEG  344 (385)
Q Consensus       304 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  344 (385)
                      .+++|+.|++++|.+.+..|  +..+++|+.|++++|.+++
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            99999999999999986665  8899999999999999985

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.2e-35  Score=279.98  Aligned_cols=183  Identities=18%  Similarity=0.136  Sum_probs=150.5

Q ss_pred             CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEE
Q 043347            7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRV   86 (385)
Q Consensus         7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L   86 (385)
                      ++|++|++++|.+.+..+..+.++++++ +|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  103 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQ-VLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL  103 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCC-EEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCccc-EEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence            5799999999999877778888999999 7999999998 6666666789999999999999987766668899999999


Q ss_pred             ecccccccc-cCCCCccCcccccEEEeecccccCCC-CcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCc
Q 043347           87 SLSFNQFTG-RIPRDLGNSTKLKLLYLSFNNLIGEI-PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNT  164 (385)
Q Consensus        87 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~  164 (385)
                      ++++|.+.+ ..+..+.++++|++|++++|...+.+ +..+..+++|++|++++|.+....+..+..+++|++++++.+.
T Consensus       104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            999998875 34567889999999999998743344 4578899999999999999988888889999999999999887


Q ss_pred             ccccCCCCcccCCCCCCceEEccccccCC
Q 043347          165 LSGNLPSSKKLIGLPNLEGLILGLNNFSG  193 (385)
Q Consensus       165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  193 (385)
                      ... .+.. .+..+++|++|++++|.+.+
T Consensus       184 ~~~-~~~~-~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          184 SAF-LLEI-FADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             STT-HHHH-HHHSTTTBSEEEEESCBCTT
T ss_pred             ccc-cchh-hHhhcccccEEEccCCcccc
Confidence            642 2221 13467899999999988764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=271.52  Aligned_cols=354  Identities=19%  Similarity=0.244  Sum_probs=240.3

Q ss_pred             cEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecc
Q 043347           10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLS   89 (385)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~   89 (385)
                      ++++++++.++ .+|..+.  ++++ +|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~-~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   77 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTT-ILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS   77 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCS-EEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred             ceEecCCCCcc-ccccccc--cccc-EEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence            57999999998 7888776  6777 8999999999 7777677799999999999999997778899999999999999


Q ss_pred             cccccccCCCCccCcccccEEEeecccccC-CCCcccCCCcCCcEEEecccccccccCccccCCCCC--cEEEccCCcc-
Q 043347           90 FNQFTGRIPRDLGNSTKLKLLYLSFNNLIG-EIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTL--KTLSLLNNTL-  165 (385)
Q Consensus        90 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~l~l~~~~~-  165 (385)
                      +|.+. .+|..  .+++|++|++++|.+.+ ..|..++.+++|++|++++|.+..   ..+..+++|  +.+++++|.+ 
T Consensus        78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~  151 (520)
T 2z7x_B           78 HNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY  151 (520)
T ss_dssp             SSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred             CCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence            99988 55655  89999999999999986 467899999999999999999875   356677788  9999999887 


Q ss_pred             -cccCCCCc------------------------ccCCCC-----------------------------------------
Q 043347          166 -SGNLPSSK------------------------KLIGLP-----------------------------------------  179 (385)
Q Consensus       166 -~~~~~~~~------------------------~~~~~~-----------------------------------------  179 (385)
                       .+..|...                        .+..++                                         
T Consensus       152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  231 (520)
T 2z7x_B          152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE  231 (520)
T ss_dssp             TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEE
T ss_pred             ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccc
Confidence             33322210                        011122                                         


Q ss_pred             ----------------CCceEEccccccCCCCCccc-----ccCCcccEEEccCccccccCccc----------------
Q 043347          180 ----------------NLEGLILGLNNFSGSIPSFF-----FNASKLYYLELAYNSFSGLIPKA----------------  222 (385)
Q Consensus       180 ----------------~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~----------------  222 (385)
                                      +|++|++++|.+.+..+..+     ..+++|+.+++++|.+ ......                
T Consensus       232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~  310 (520)
T 2z7x_B          232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVS  310 (520)
T ss_dssp             EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEE
T ss_pred             cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcC
Confidence                            34444444444433333333     3333333333333332 000000                


Q ss_pred             ---------ccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCC--CCCCcccccccceeEEEeec
Q 043347          223 ---------LGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDG--VLPSSIGNLSVSVEEIYMYK  291 (385)
Q Consensus       223 ---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~~L~l~~  291 (385)
                               ...+++|+.|++++|.+.+.      .+..+..+++|+.|++++|.+.+  ..|..+..+ +++++|++++
T Consensus       311 ~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l-~~L~~L~Ls~  383 (520)
T 2z7x_B          311 GTRMVHMLCPSKISPFLHLDFSNNLLTDT------VFENCGHLTELETLILQMNQLKELSKIAEMTTQM-KSLQQLDISQ  383 (520)
T ss_dssp             SSCCCCCCCCSSCCCCCEEECCSSCCCTT------TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC-TTCCEEECCS
T ss_pred             CCccccccchhhCCcccEEEeECCccChh------hhhhhccCCCCCEEEccCCccCccccchHHHhhC-CCCCEEECCC
Confidence                     13455566666666655542      12345556666666666666654  222334444 5666666666


Q ss_pred             cccCCCCCc-cccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccC
Q 043347          292 CNIHGRIPK-EIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSI  370 (385)
Q Consensus       292 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  370 (385)
                      |++.+..|. .+..+++|++|++++|.+++..+..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|+++...
T Consensus       384 N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~  460 (520)
T 2z7x_B          384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVP  460 (520)
T ss_dssp             SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred             CcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccC
Confidence            666653332 355566667777776666554444332  67888888888887 67776678899999999999988433


Q ss_pred             CCcccccccCccccC
Q 043347          371 PSCLGDLNSLRILSL  385 (385)
Q Consensus       371 ~~~~~~l~~L~~l~i  385 (385)
                      +..+..+++|+.|++
T Consensus       461 ~~~~~~l~~L~~L~l  475 (520)
T 2z7x_B          461 DGIFDRLTSLQKIWL  475 (520)
T ss_dssp             TTTTTTCTTCCEEEC
T ss_pred             HHHhccCCcccEEEC
Confidence            344788888888764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5.6e-34  Score=273.43  Aligned_cols=370  Identities=22%  Similarity=0.217  Sum_probs=263.2

Q ss_pred             cccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEe
Q 043347            8 ELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVS   87 (385)
Q Consensus         8 ~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~   87 (385)
                      ++++|+|++|.+++..+.++.++++++ +|++++|.++ .+++++|..+++|++|++++|.+++..+..|.++++|++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~-~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQ-VLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCC-EEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCC-EEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            689999999999855556788999999 7999999998 88888888899999999999999877777889999999999


Q ss_pred             cccccccccCCCCccCcccccEEEeecccccC-CCCcccCCCcCCcEEEecccccccccCccccCCCC------------
Q 043347           88 LSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIG-EIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMST------------  154 (385)
Q Consensus        88 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~------------  154 (385)
                      +++|.+....+..++++++|++|++++|.+.. ..|..++.+++|++|++++|.+....+..+..+.+            
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~  210 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  210 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence            99999886656678999999999999998865 35677888999999999998876554433322111            


Q ss_pred             ---------------CcEEEccCCcccc---------------------------cC-----------------------
Q 043347          155 ---------------LKTLSLLNNTLSG---------------------------NL-----------------------  169 (385)
Q Consensus       155 ---------------L~~l~l~~~~~~~---------------------------~~-----------------------  169 (385)
                                     ++.+++..+....                           ..                       
T Consensus       211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~  290 (635)
T 4g8a_A          211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  290 (635)
T ss_dssp             CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred             CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence                           1112221110000                           00                       


Q ss_pred             --------C--------------------CCcccCCCCCCceEEccccccCCCCC-------------------cccccC
Q 043347          170 --------P--------------------SSKKLIGLPNLEGLILGLNNFSGSIP-------------------SFFFNA  202 (385)
Q Consensus       170 --------~--------------------~~~~~~~~~~L~~L~l~~~~~~~~~~-------------------~~~~~~  202 (385)
                              .                    ....+.....++.+++..+.+.....                   .....+
T Consensus       291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l  370 (635)
T 4g8a_A          291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL  370 (635)
T ss_dssp             CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred             hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence                    0                    00001122344555555443321111                   112345


Q ss_pred             CcccEEEccCcccccc--Cccc-----------------------ccCCCCccEEEecCCcccccchhhhhhhHhhhccc
Q 043347          203 SKLYYLELAYNSFSGL--IPKA-----------------------LGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCK  257 (385)
Q Consensus       203 ~~L~~L~l~~~~~~~~--~~~~-----------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  257 (385)
                      ++++.+++++|.+...  .+..                       +..+++|+.++++.+.......     ...+..++
T Consensus       371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-----~~~~~~l~  445 (635)
T 4g8a_A          371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-----FSVFLSLR  445 (635)
T ss_dssp             TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS-----SCTTTTCT
T ss_pred             cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc-----cccccccc
Confidence            6777777777655321  1222                       2334455555555443332211     23567778


Q ss_pred             CceEEEccCCCCCCCCCCcccccccceeEEEeeccccCC-CCCccccCCCCccEEECcCccccCCCccccccCCCCCeEe
Q 043347          258 SLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHG-RIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLD  336 (385)
Q Consensus       258 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  336 (385)
                      +++.++++.|.+....+..+... ++++.|++++|+... ..|..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus       446 ~l~~l~ls~n~l~~~~~~~~~~~-~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~  524 (635)
T 4g8a_A          446 NLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  524 (635)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccccccccccccccccccccc-hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence            88888888888876666665555 789999999887543 4667788899999999999999887888899999999999


Q ss_pred             ccCCcccCCChhhhhcCCCccEEEccCCcccccCCCccccc-ccCccccC
Q 043347          337 LQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDL-NSLRILSL  385 (385)
Q Consensus       337 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~l~i  385 (385)
                      +++|++++..+..+..+++|+.|++++|++++..|+.+..+ ++|+.|++
T Consensus       525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L  574 (635)
T 4g8a_A          525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL  574 (635)
T ss_dssp             CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred             CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence            99999998888888889999999999999998888888877 67888764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.1e-33  Score=267.02  Aligned_cols=331  Identities=23%  Similarity=0.276  Sum_probs=226.9

Q ss_pred             ceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEE
Q 043347           32 SISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLY  111 (385)
Q Consensus        32 ~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  111 (385)
                      ..+ +++++++.++ .+|..+.   ++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+.++++|++|+
T Consensus        32 ~~~-~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           32 LES-MVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             -CC-EEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCc-EEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            334 7999999999 7998764   8999999999999977778999999999999999999987788999999999999


Q ss_pred             eecccccCCCCcccCCCcCCcEEEecccccccc-cCccccCCCCCcEEEccCCcccccCCCCcccCCCCCC--ceEEccc
Q 043347          112 LSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGF-IPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL--EGLILGL  188 (385)
Q Consensus       112 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~  188 (385)
                      +++|.+. .+|..  .+++|++|++++|.+... .+..+..+++|++|++++|.+...     .+..+++|  ++|++++
T Consensus       107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLSCILLDL  178 (562)
T ss_dssp             CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEEEEEEEE
T ss_pred             CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-----chhhhhhceeeEEEeec
Confidence            9999988 55555  799999999999999864 357899999999999999988642     14445555  9999998


Q ss_pred             ccc--CCCCCcccccC--------------------------C-------------------------------------
Q 043347          189 NNF--SGSIPSFFFNA--------------------------S-------------------------------------  203 (385)
Q Consensus       189 ~~~--~~~~~~~~~~~--------------------------~-------------------------------------  203 (385)
                      |.+  ....+..+..+                          +                                     
T Consensus       179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH  258 (562)
T ss_dssp             SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred             ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence            877  43333333321                          2                                     


Q ss_pred             ------------------cccEEEccCccccccCcccc------------------------------------------
Q 043347          204 ------------------KLYYLELAYNSFSGLIPKAL------------------------------------------  223 (385)
Q Consensus       204 ------------------~L~~L~l~~~~~~~~~~~~~------------------------------------------  223 (385)
                                        +|++|++++|.+.+..+..+                                          
T Consensus       259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l  338 (562)
T 3a79_B          259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI  338 (562)
T ss_dssp             EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred             CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence                              45555555555543333222                                          


Q ss_pred             -----------cCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCC--CCcccccccceeEEEee
Q 043347          224 -----------GQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVL--PSSIGNLSVSVEEIYMY  290 (385)
Q Consensus       224 -----------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~l~~L~l~  290 (385)
                                 ..+++|+.|++++|.+.+.      .+..+..+++|+.|++++|.+.+..  +..+..+ +++++|+++
T Consensus       339 ~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~L~l~  411 (562)
T 3a79_B          339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDS------VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM-SSLETLDVS  411 (562)
T ss_dssp             ESSCCCCCCCCSSCCCCCEEECCSSCCCTT------TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTC-TTCCEEECT
T ss_pred             cCCCcccccCccCCCCceEEECCCCccccc------hhhhhcccCCCCEEECCCCCcCCcccchhhhcCC-CCCCEEECC
Confidence                       3344455555555544432      1234455555555555555554321  1223333 455666666


Q ss_pred             ccccCCCCC-ccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCccccc
Q 043347          291 KCNIHGRIP-KEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGS  369 (385)
Q Consensus       291 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  369 (385)
                      +|++.+..+ ..+..+++|++|++++|.+++..+..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|+++..
T Consensus       412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l  488 (562)
T 3a79_B          412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSV  488 (562)
T ss_dssp             TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCC
T ss_pred             CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCC
Confidence            665554222 2345556666666666665544433332  57888888888777 5666556888889999998888843


Q ss_pred             CCCcccccccCccccC
Q 043347          370 IPSCLGDLNSLRILSL  385 (385)
Q Consensus       370 ~~~~~~~l~~L~~l~i  385 (385)
                      .+..+..+++|+.+++
T Consensus       489 ~~~~~~~l~~L~~L~l  504 (562)
T 3a79_B          489 PDGVFDRLTSLQYIWL  504 (562)
T ss_dssp             CTTSTTTCTTCCCEEC
T ss_pred             CHHHHhcCCCCCEEEe
Confidence            3334778888887754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.4e-33  Score=252.80  Aligned_cols=312  Identities=20%  Similarity=0.203  Sum_probs=262.2

Q ss_pred             cccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCccccc
Q 043347           29 NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLK  108 (385)
Q Consensus        29 ~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  108 (385)
                      .+.+++ .++++++.++ .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+.++++|+
T Consensus        43 ~l~~l~-~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQK-IVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCS-EEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCce-EEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            456677 7999999998 88998888899999999999999877777899999999999999999877777889999999


Q ss_pred             EEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccc
Q 043347          109 LLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGL  188 (385)
Q Consensus       109 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  188 (385)
                      +|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+... +    +..+++|+.++++.
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~----~~~l~~L~~L~l~~  195 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D----LSLIPSLFHANVSY  195 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C----GGGCTTCSEEECCS
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c----cccccccceeeccc
Confidence            999999998854444578899999999999999877778889999999999999988643 1    55688999999998


Q ss_pred             cccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCC
Q 043347          189 NNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENP  268 (385)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  268 (385)
                      +.+..     +...+++++|++++|.+.....   ...++|+.|++++|.++..        ..+..+++|+.|++++|.
T Consensus       196 n~l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~Ls~n~  259 (390)
T 3o6n_A          196 NLLST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNE  259 (390)
T ss_dssp             SCCSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSC
T ss_pred             ccccc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--------HHHcCCCCccEEECCCCc
Confidence            87652     3445689999999998875432   2357899999999988764        357888999999999999


Q ss_pred             CCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChh
Q 043347          269 VDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPH  348 (385)
Q Consensus       269 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  348 (385)
                      +.+..+..+... +++++|++++|++.+ .+..+..+++|++|++++|.+. .++..+..+++|+.|++++|++++. + 
T Consensus       260 l~~~~~~~~~~l-~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-  334 (390)
T 3o6n_A          260 LEKIMYHPFVKM-QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-  334 (390)
T ss_dssp             CCEEESGGGTTC-SSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-
T ss_pred             CCCcChhHcccc-ccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-
Confidence            988877777777 799999999999875 4555677899999999999998 6677788899999999999999854 3 


Q ss_pred             hhhcCCCccEEEccCCccccc
Q 043347          349 EFCHFSRLYKFYLNRNKLSGS  369 (385)
Q Consensus       349 ~~~~~~~L~~L~l~~~~~~~~  369 (385)
                       +..+++|+.|++++|++.+.
T Consensus       335 -~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          335 -LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             -CCTTCCCSEEECCSSCEEHH
T ss_pred             -chhhccCCEEEcCCCCccch
Confidence             56689999999999998753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1e-32  Score=244.93  Aligned_cols=306  Identities=23%  Similarity=0.321  Sum_probs=181.8

Q ss_pred             ccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccc
Q 043347           28 FNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKL  107 (385)
Q Consensus        28 ~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  107 (385)
                      ..+++++ .|+++++.+. .++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.. . ..+..+++|
T Consensus        41 ~~l~~L~-~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L  112 (347)
T 4fmz_A           41 EELESIT-KLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNL  112 (347)
T ss_dssp             HHHTTCS-EEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred             hhccccc-EEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence            3455555 5666666665 4443  3356666666666666553222  5566666666666665552 2 245566666


Q ss_pred             cEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEcc
Q 043347          108 KLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILG  187 (385)
Q Consensus       108 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  187 (385)
                      ++|++++|.+.+ .+. +..+++|+.|++++|...... ..+..+++|+++++++|.+....+    +..+++|++|+++
T Consensus       113 ~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~  185 (347)
T 4fmz_A          113 RELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLN  185 (347)
T ss_dssp             SEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECT
T ss_pred             CEEECcCCcccC-chh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEcc
Confidence            666666666552 222 556666666666666433222 225566666666666665543211    4456666666666


Q ss_pred             ccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCC
Q 043347          188 LNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAEN  267 (385)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  267 (385)
                      +|.+.+...  +..+++|+.+++++|.+.+..+  +..+++|+.|++++|.+...+        .+..+++|+.|++++|
T Consensus       186 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~--------~~~~l~~L~~L~l~~n  253 (347)
T 4fmz_A          186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS--------PLANLSQLTWLEIGTN  253 (347)
T ss_dssp             TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--------GGTTCTTCCEEECCSS
T ss_pred             CCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc--------chhcCCCCCEEECCCC
Confidence            666553222  5566666677766666654322  556666777777776665532        1556666777777766


Q ss_pred             CCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCCh
Q 043347          268 PVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIP  347 (385)
Q Consensus       268 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  347 (385)
                      .+.+.  +.+... +++++|++++|++.+.  ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..+
T Consensus       254 ~l~~~--~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          254 QISDI--NAVKDL-TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CCCCC--GGGTTC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             ccCCC--hhHhcC-CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            66543  223333 5677777777766543  346667777777777777776666677777777777777777775444


Q ss_pred             hhhhcCCCccEEEccCCccc
Q 043347          348 HEFCHFSRLYKFYLNRNKLS  367 (385)
Q Consensus       348 ~~~~~~~~L~~L~l~~~~~~  367 (385)
                        +..+++|++|++++|+++
T Consensus       329 --~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          329 --LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             --GGGCTTCSEESSSCC---
T ss_pred             --hhhhhccceeehhhhccc
Confidence              566777777777777764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6e-33  Score=246.40  Aligned_cols=306  Identities=24%  Similarity=0.382  Sum_probs=257.6

Q ss_pred             CCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCC
Q 043347            4 GNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKEL   83 (385)
Q Consensus         4 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L   83 (385)
                      ..+++|++|+++++.+. .++ .+..+++++ +|++++|.++ .++.  +..+++|++|++++|.+...  ..+..+++|
T Consensus        41 ~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~-~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L  112 (347)
T 4fmz_A           41 EELESITKLVVAGEKVA-SIQ-GIEYLTNLE-YLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL  112 (347)
T ss_dssp             HHHTTCSEEECCSSCCC-CCT-TGGGCTTCC-EEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             hhcccccEEEEeCCccc-cch-hhhhcCCcc-EEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence            46889999999999987 454 488899999 7999999999 6666  56899999999999988743  468999999


Q ss_pred             cEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCC
Q 043347           84 SRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNN  163 (385)
Q Consensus        84 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~  163 (385)
                      ++|++++|.+... +. +..+++|++|++++|...... ..+..+++|+.|++++|.+....+  +..+++|+.+++++|
T Consensus       113 ~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          113 RELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN  187 (347)
T ss_dssp             SEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred             CEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence            9999999998743 33 889999999999999766444 448999999999999999875433  789999999999999


Q ss_pred             cccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccc
Q 043347          164 TLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSST  243 (385)
Q Consensus       164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  243 (385)
                      .+....+    +..+++|+.++++++.+.+...  +..+++|++|++++|.+....+  +..+++|+.|++++|.+... 
T Consensus       188 ~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-  258 (347)
T 4fmz_A          188 QIEDISP----LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-  258 (347)
T ss_dssp             CCCCCGG----GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-
T ss_pred             ccccccc----ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-
Confidence            8864322    6688999999999998875433  7889999999999999986543  88999999999999988864 


Q ss_pred             hhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCc
Q 043347          244 SELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLP  323 (385)
Q Consensus       244 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  323 (385)
                             ..+..+++|+.|++++|.+.+.  ..+... +++++|++++|++.+..+..+..+++|++|++++|.+++..+
T Consensus       259 -------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          259 -------NAVKDLTKLKMLNVGSNQISDI--SVLNNL-SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             -------GGGTTCTTCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             -------hhHhcCCCcCEEEccCCccCCC--hhhcCC-CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence                   3578899999999999998865  334544 899999999999998888889999999999999999986555


Q ss_pred             cccccCCCCCeEeccCCccc
Q 043347          324 ITLGRLKKLQGLDLQNNKFE  343 (385)
Q Consensus       324 ~~~~~~~~L~~L~l~~~~~~  343 (385)
                        +..+++|+.|++++|.++
T Consensus       329 --~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          329 --LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             --GGGCTTCSEESSSCC---
T ss_pred             --hhhhhccceeehhhhccc
Confidence              888999999999999886

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.4e-32  Score=259.17  Aligned_cols=311  Identities=20%  Similarity=0.203  Sum_probs=263.8

Q ss_pred             cccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCccccc
Q 043347           29 NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLK  108 (385)
Q Consensus        29 ~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  108 (385)
                      .+.++. .++++++.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..++++++|+
T Consensus        49 ~l~~l~-~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQK-IVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCS-EEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCce-EEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            345566 7999999998 88998888899999999999999877778999999999999999999877777889999999


Q ss_pred             EEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccc
Q 043347          109 LLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGL  188 (385)
Q Consensus       109 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  188 (385)
                      +|++++|.+....+..|+.+++|+.|++++|.+....+..+..+++|+.|++++|.+.+. +    +..+++|+.+++++
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~----~~~l~~L~~L~l~~  201 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D----LSLIPSLFHANVSY  201 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C----GGGCTTCSEEECCS
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C----hhhhhhhhhhhccc
Confidence            999999998855555578999999999999999888888899999999999999988643 2    55688999999998


Q ss_pred             cccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCC
Q 043347          189 NNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENP  268 (385)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  268 (385)
                      |.+..     +...++|+.|++++|.+......   ..++|+.|++++|.++..        ..+..+++|+.|++++|.
T Consensus       202 n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--------~~l~~l~~L~~L~Ls~N~  265 (597)
T 3oja_B          202 NLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNE  265 (597)
T ss_dssp             SCCSE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSC
T ss_pred             Ccccc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--------hhhccCCCCCEEECCCCc
Confidence            87653     34567899999999988754332   237899999999988763        467889999999999999


Q ss_pred             CCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChh
Q 043347          269 VDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPH  348 (385)
Q Consensus       269 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  348 (385)
                      +.+..|..+..+ ++|+.|++++|.+.+ ++..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++. + 
T Consensus       266 l~~~~~~~~~~l-~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-  340 (597)
T 3oja_B          266 LEKIMYHPFVKM-QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-  340 (597)
T ss_dssp             CCEEESGGGTTC-SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-
T ss_pred             cCCCCHHHhcCc-cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C-
Confidence            998888888777 899999999999885 4556677899999999999998 6777788899999999999999854 3 


Q ss_pred             hhhcCCCccEEEccCCcccc
Q 043347          349 EFCHFSRLYKFYLNRNKLSG  368 (385)
Q Consensus       349 ~~~~~~~L~~L~l~~~~~~~  368 (385)
                       +..+++|+.|++++|++.+
T Consensus       341 -~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          341 -LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             -CCTTCCCSEEECCSSCEEH
T ss_pred             -hhhcCCCCEEEeeCCCCCC
Confidence             5668999999999998865

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.9e-32  Score=244.26  Aligned_cols=304  Identities=19%  Similarity=0.222  Sum_probs=257.5

Q ss_pred             CCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEE
Q 043347           55 GLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEIL  134 (385)
Q Consensus        55 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  134 (385)
                      .+++++.++++++.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            47899999999999886655567899999999999999987777789999999999999999997778889999999999


Q ss_pred             EecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCcc
Q 043347          135 RIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNS  214 (385)
Q Consensus       135 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  214 (385)
                      ++++|.+....+..+..+++|++|++++|.+....+..  +..+++|++|++++|.++..   .+..+++|+.+++++|.
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT--FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT--TSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhh--ccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence            99999998665566789999999999999987654433  77899999999999988754   35678899999999997


Q ss_pred             ccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeecccc
Q 043347          215 FSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNI  294 (385)
Q Consensus       215 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~  294 (385)
                      +..     +...++|+.|++++|.+...+.         ...++|+.|++++|.+.+.  ..+... +++++|++++|.+
T Consensus       198 l~~-----~~~~~~L~~L~l~~n~l~~~~~---------~~~~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~Ls~n~l  260 (390)
T 3o6n_A          198 LST-----LAIPIAVEELDASHNSINVVRG---------PVNVELTILKLQHNNLTDT--AWLLNY-PGLVEVDLSYNEL  260 (390)
T ss_dssp             CSE-----EECCSSCSEEECCSSCCCEEEC---------CCCSSCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCC
T ss_pred             ccc-----cCCCCcceEEECCCCeeeeccc---------cccccccEEECCCCCCccc--HHHcCC-CCccEEECCCCcC
Confidence            764     2345789999999999877533         2247999999999999864  455555 8999999999999


Q ss_pred             CCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcc
Q 043347          295 HGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCL  374 (385)
Q Consensus       295 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  374 (385)
                      .+..+..+..+++|++|++++|.+. .++..+..+++|+.|++++|+++ ..+..+..+++|+.|++++|+++...   +
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~  335 (390)
T 3o6n_A          261 EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---L  335 (390)
T ss_dssp             CEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---C
T ss_pred             CCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---c
Confidence            9888888999999999999999998 45666678999999999999998 67777888999999999999998553   5


Q ss_pred             cccccCccccC
Q 043347          375 GDLNSLRILSL  385 (385)
Q Consensus       375 ~~l~~L~~l~i  385 (385)
                      ..+++|+.|++
T Consensus       336 ~~~~~L~~L~l  346 (390)
T 3o6n_A          336 STHHTLKNLTL  346 (390)
T ss_dssp             CTTCCCSEEEC
T ss_pred             hhhccCCEEEc
Confidence            56777777654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.6e-32  Score=260.10  Aligned_cols=358  Identities=22%  Similarity=0.241  Sum_probs=266.5

Q ss_pred             CCCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCC
Q 043347            2 ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK   81 (385)
Q Consensus         2 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~   81 (385)
                      +|.++++|++|+|++|.+.+..+.++.++++++ +|++++|+++ .+|.++|..+++|++|++++|.+.+..+..|..++
T Consensus        71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~-~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~  148 (635)
T 4g8a_A           71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS-TLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK  148 (635)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC-EEECTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred             HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCC-EEEccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence            588999999999999999855566788999999 7999999999 88999888999999999999999977777899999


Q ss_pred             CCcEEecccccccc-cCCCCccCcccccEEEeecccccCCCCcccCCCcC---------------------------CcE
Q 043347           82 ELSRVSLSFNQFTG-RIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRN---------------------------LEI  133 (385)
Q Consensus        82 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~---------------------------L~~  133 (385)
                      +|++|++++|.+.. ..|..+..+++|++|++++|.+.+..+..+..+.+                           ++.
T Consensus       149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~  228 (635)
T 4g8a_A          149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK  228 (635)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred             ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhh
Confidence            99999999998874 35677889999999999999876544443322111                           112


Q ss_pred             EEeccccccc-------------------------------c--------------------------------------
Q 043347          134 LRIDQNNLVG-------------------------------F--------------------------------------  144 (385)
Q Consensus       134 L~l~~~~~~~-------------------------------~--------------------------------------  144 (385)
                      +++.++....                               .                                      
T Consensus       229 l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l  308 (635)
T 4g8a_A          229 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV  308 (635)
T ss_dssp             EEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred             hhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence            2221110000                               0                                      


Q ss_pred             -----------cCccccCCCCCcEEEccCCcccccCC-----------------CCcccCCCCCCceEEccccccCC---
Q 043347          145 -----------IPDTIFNMSTLKTLSLLNNTLSGNLP-----------------SSKKLIGLPNLEGLILGLNNFSG---  193 (385)
Q Consensus       145 -----------~~~~~~~l~~L~~l~l~~~~~~~~~~-----------------~~~~~~~~~~L~~L~l~~~~~~~---  193 (385)
                                 ....+.....++.+++.++.+.....                 .......++.|+.++++.+.+..   
T Consensus       309 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~  388 (635)
T 4g8a_A          309 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC  388 (635)
T ss_dssp             SEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred             ccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccc
Confidence                       00001122345556555554322110                 00112345677777777665421   


Q ss_pred             ----------------------CCCcccccCCcccEEEccCcccccc-CcccccCCCCccEEEecCCcccccchhhhhhh
Q 043347          194 ----------------------SIPSFFFNASKLYYLELAYNSFSGL-IPKALGQLRNLERLGLQSNYLTSSTSELMSLF  250 (385)
Q Consensus       194 ----------------------~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  250 (385)
                                            .....+..+++++.+++.++..... ....+..+++++.++++.|.+.....      
T Consensus       389 ~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~------  462 (635)
T 4g8a_A          389 CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN------  462 (635)
T ss_dssp             CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCT------
T ss_pred             cccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccc------
Confidence                                  1122344567777788777665433 33567788999999999998876643      


Q ss_pred             HhhhcccCceEEEccCCCCC-CCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccC
Q 043347          251 SALVNCKSLKVIVLAENPVD-GVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRL  329 (385)
Q Consensus       251 ~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  329 (385)
                      ..+..++.++.|++++|... ...|..+..+ +++++|++++|++.+..|.+|.++++|++|++++|.+++..+..+..+
T Consensus       463 ~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l-~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l  541 (635)
T 4g8a_A          463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL  541 (635)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTC
T ss_pred             cccccchhhhhhhhhhcccccccCchhhhhc-cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCC
Confidence            45778899999999999754 3456666666 899999999999998889999999999999999999998888889999


Q ss_pred             CCCCeEeccCCcccCCChhhhhcC-CCccEEEccCCcccc
Q 043347          330 KKLQGLDLQNNKFEGPIPHEFCHF-SRLYKFYLNRNKLSG  368 (385)
Q Consensus       330 ~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~  368 (385)
                      ++|+.|++++|++++..+..+..+ ++|+.|++++|++.+
T Consensus       542 ~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          542 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             TTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            999999999999998888888887 689999999998764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=3.2e-31  Score=251.44  Aligned_cols=304  Identities=19%  Similarity=0.223  Sum_probs=259.3

Q ss_pred             CCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEE
Q 043347           55 GLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEIL  134 (385)
Q Consensus        55 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  134 (385)
                      .+++++.++++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|+.+++|+.|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            46789999999999886666668889999999999999997777799999999999999999998778889999999999


Q ss_pred             EecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCcc
Q 043347          135 RIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNS  214 (385)
Q Consensus       135 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  214 (385)
                      ++++|.+....+..+..+++|++|++++|.+.+..+..  +..+++|+.|++++|.+...   .+..+++|+.+++++|.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT--FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  203 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT--TTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh--hhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCc
Confidence            99999998766666789999999999999988655433  77899999999999988754   35667899999999997


Q ss_pred             ccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeecccc
Q 043347          215 FSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNI  294 (385)
Q Consensus       215 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~  294 (385)
                      +..     +...++|+.|++++|.+...+..         ..++|+.|++++|.+.+.  ..+..+ ++|+.|++++|.+
T Consensus       204 l~~-----l~~~~~L~~L~ls~n~l~~~~~~---------~~~~L~~L~L~~n~l~~~--~~l~~l-~~L~~L~Ls~N~l  266 (597)
T 3oja_B          204 LST-----LAIPIAVEELDASHNSINVVRGP---------VNVELTILKLQHNNLTDT--AWLLNY-PGLVEVDLSYNEL  266 (597)
T ss_dssp             CSE-----EECCTTCSEEECCSSCCCEEECS---------CCSCCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCC
T ss_pred             ccc-----ccCCchhheeeccCCcccccccc---------cCCCCCEEECCCCCCCCC--hhhccC-CCCCEEECCCCcc
Confidence            764     34567899999999998765431         236899999999999863  556666 8999999999999


Q ss_pred             CCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcc
Q 043347          295 HGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCL  374 (385)
Q Consensus       295 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  374 (385)
                      .+..|..+..+++|+.|++++|.+.+ ++..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++...   +
T Consensus       267 ~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~  341 (597)
T 3oja_B          267 EKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---L  341 (597)
T ss_dssp             CEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---C
T ss_pred             CCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---h
Confidence            98888899999999999999999984 5666778999999999999998 67888888999999999999998553   4


Q ss_pred             cccccCccccC
Q 043347          375 GDLNSLRILSL  385 (385)
Q Consensus       375 ~~l~~L~~l~i  385 (385)
                      ..+++|+.|++
T Consensus       342 ~~~~~L~~L~l  352 (597)
T 3oja_B          342 STHHTLKNLTL  352 (597)
T ss_dssp             CTTCCCSEEEC
T ss_pred             hhcCCCCEEEe
Confidence            55667776653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.98  E-value=4.4e-31  Score=241.54  Aligned_cols=326  Identities=18%  Similarity=0.158  Sum_probs=248.6

Q ss_pred             CCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCC
Q 043347            3 LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE   82 (385)
Q Consensus         3 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   82 (385)
                      +.++++|++|++++|.+.+ +| .+..+++++ +|++++|.++ .++   +..+++|++|++++|.+.+.   .+..+++
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~-~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~---~~~~l~~  107 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITD-MT-GIEKLTGLT-KLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL---DVTPLTK  107 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCC-CT-TGGGCTTCS-EEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC---CCTTCTT
T ss_pred             hhHcCCCCEEEccCCCccc-Ch-hhcccCCCC-EEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee---ecCCCCc
Confidence            4568899999999999984 45 688888998 7999999998 565   45789999999999998864   2788999


Q ss_pred             CcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccC
Q 043347           83 LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLN  162 (385)
Q Consensus        83 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~  162 (385)
                      |++|++++|.+.+ .+  +..+++|++|++++|.+.+.   .++.+++|+.|++++|......  .+..+++|+.|++++
T Consensus       108 L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          108 LTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF  179 (457)
T ss_dssp             CCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence            9999999998874 33  78899999999999988753   3788999999999998544333  477889999999999


Q ss_pred             CcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCccccc
Q 043347          163 NTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSS  242 (385)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  242 (385)
                      |.+.+ ++    +..+++|+.|++++|.+++.   .+..+++|++|++++|++.+. +  +..+++|+.|++++|.++..
T Consensus       180 n~l~~-l~----l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          180 NKITE-LD----VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             SCCCC-CC----CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC
T ss_pred             Cccce-ec----cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCc
Confidence            98875 33    56788999999999988754   377889999999999998864 3  77889999999999988875


Q ss_pred             chhhhhhhHhhhcccCc----------eEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCc--------cccC
Q 043347          243 TSELMSLFSALVNCKSL----------KVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPK--------EIGN  304 (385)
Q Consensus       243 ~~~~~~~~~~~~~~~~L----------~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--------~~~~  304 (385)
                      +.         ..+++|          +.+++++|...+..|  ... .++++.|++++|...+.+|.        .+..
T Consensus       249 ~~---------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~-l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~  316 (457)
T 3bz5_A          249 DV---------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEG-CRKIKELDVTHNTQLYLLDCQAAGITELDLSQ  316 (457)
T ss_dssp             CC---------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTT-CTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred             CH---------HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccc-cccCCEEECCCCcccceeccCCCcceEechhh
Confidence            32         233444          444555554444333  122 27888888888875543322        2556


Q ss_pred             CCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhh-------------cCCCccEEEccCCcccccCC
Q 043347          305 LINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFC-------------HFSRLYKFYLNRNKLSGSIP  371 (385)
Q Consensus       305 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------~~~~L~~L~l~~~~~~~~~~  371 (385)
                      +++|++|++++|.+++ +  .+..+++|+.|++++|++++. + .+.             .+..|..+++++|++++.+|
T Consensus       317 ~~~L~~L~L~~N~l~~-l--~l~~l~~L~~L~l~~N~l~~l-~-~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip  391 (457)
T 3bz5_A          317 NPKLVYLYLNNTELTE-L--DVSHNTKLKSLSCVNAHIQDF-S-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS  391 (457)
T ss_dssp             CTTCCEEECTTCCCSC-C--CCTTCTTCSEEECCSSCCCBC-T-TGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECC
T ss_pred             cccCCEEECCCCcccc-c--ccccCCcCcEEECCCCCCCCc-c-ccccccccCCcEEecceeeecCccccccCcEEEEcC
Confidence            7889999999999886 3  278889999999999988752 1 111             23456778888888888887


Q ss_pred             Ccc
Q 043347          372 SCL  374 (385)
Q Consensus       372 ~~~  374 (385)
                      ..+
T Consensus       392 ~~~  394 (457)
T 3bz5_A          392 PDL  394 (457)
T ss_dssp             TTC
T ss_pred             hhH
Confidence            654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.97  E-value=5.2e-30  Score=234.27  Aligned_cols=325  Identities=23%  Similarity=0.287  Sum_probs=151.0

Q ss_pred             CCCcCcccEEEecCccccCCCCcccccccce------------eceeEeecCccccCCChhhhcCCCcccEEEccCCccc
Q 043347            3 LGNLAELEVLVLNNNLLTGTIPASIFNLSSI------------STGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFK   70 (385)
Q Consensus         3 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l------------~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   70 (385)
                      |.++++|++|++++|.+.+.+|.+++++..+            .++|+++++.++ .+|.    ..++|++|++++|.+.
T Consensus        30 i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~----~~~~L~~L~l~~n~l~  104 (454)
T 1jl5_A           30 AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPE----LPPHLESLVASCNSLT  104 (454)
T ss_dssp             ----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCS
T ss_pred             HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCC----CcCCCCEEEccCCcCC
Confidence            4455555555555555555555555444433            114555555554 3333    1245555555555554


Q ss_pred             CcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCcccc
Q 043347           71 GPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIF  150 (385)
Q Consensus        71 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  150 (385)
                      + ++..   .++|++|++++|.+.+ ++..   .++|++|++++|.+.+ +| .++.+++|++|++++|.++. .+..  
T Consensus       105 ~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~--  171 (454)
T 1jl5_A          105 E-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL--  171 (454)
T ss_dssp             S-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC--
T ss_pred             c-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC--
Confidence            3 2211   2445555555544431 1111   1455555555555542 33 35555555555555555442 2221  


Q ss_pred             CCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCcc
Q 043347          151 NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLE  230 (385)
Q Consensus       151 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  230 (385)
                       .++|++|++++|.+.+ +|.   +..+++|++|++++|.+.+. +..   .++|++|++++|.+.. .+ .++.+++|+
T Consensus       172 -~~~L~~L~L~~n~l~~-l~~---~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~n~l~~-lp-~~~~l~~L~  240 (454)
T 1jl5_A          172 -PPSLEFIAAGNNQLEE-LPE---LQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNNILEE-LP-ELQNLPFLT  240 (454)
T ss_dssp             -CTTCCEEECCSSCCSS-CCC---CTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCC
T ss_pred             -cccccEEECcCCcCCc-Ccc---ccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcCCcCCc-cc-ccCCCCCCC
Confidence             1355555555555443 221   34455555555555544421 111   1344555555544442 22 244445555


Q ss_pred             EEEecCCcccccchhhhh-------------hhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCC
Q 043347          231 RLGLQSNYLTSSTSELMS-------------LFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGR  297 (385)
Q Consensus       231 ~L~l~~~~~~~~~~~~~~-------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~  297 (385)
                      .|++++|.+...+.....             +.   ...++|+.|++++|.+.+..     ..+++++.|++++|++.+ 
T Consensus       241 ~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~---~~~~~L~~L~ls~N~l~~l~-----~~~~~L~~L~l~~N~l~~-  311 (454)
T 1jl5_A          241 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLP---ELPQSLTFLDVSENIFSGLS-----ELPPNLYYLNASSNEIRS-  311 (454)
T ss_dssp             EEECCSSCCSSCCSCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSEES-----CCCTTCCEEECCSSCCSE-
T ss_pred             EEECCCCcCCcccccccccCEEECCCCcccccC---cccCcCCEEECcCCccCccc-----CcCCcCCEEECcCCcCCc-
Confidence            555555444432210000             00   01134555555555444311     111344444444444432 


Q ss_pred             CCccccCC-CCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccc--cCCCcc
Q 043347          298 IPKEIGNL-INLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSG--SIPSCL  374 (385)
Q Consensus       298 ~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~  374 (385)
                          +..+ ++|++|++++|.+.+ +|..   +++|+.|++++|+++ .+|.   .+++|+.|++++|++++  .+|..+
T Consensus       312 ----i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l  379 (454)
T 1jl5_A          312 ----LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESV  379 (454)
T ss_dssp             ----ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred             ----ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHH
Confidence                1122 367777777777663 4432   467777777777776 3444   35677777777777776  566666


Q ss_pred             ccc
Q 043347          375 GDL  377 (385)
Q Consensus       375 ~~l  377 (385)
                      .++
T Consensus       380 ~~L  382 (454)
T 1jl5_A          380 EDL  382 (454)
T ss_dssp             CEE
T ss_pred             Hhh
Confidence            655

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=6.2e-30  Score=233.95  Aligned_cols=309  Identities=21%  Similarity=0.167  Sum_probs=248.4

Q ss_pred             cCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCC
Q 043347           20 TGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPR   99 (385)
Q Consensus        20 ~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~   99 (385)
                      .+..+.++.++++++ +|+++++.++ .+| . +..+++|++|++++|.+.+. +  +..+++|++|++++|.+.+. + 
T Consensus        31 ~~~~~~~~~~l~~L~-~L~Ls~n~l~-~~~-~-l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-  101 (457)
T 3bz5_A           31 QATDTISEEQLATLT-SLDCHNSSIT-DMT-G-IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-  101 (457)
T ss_dssp             CTTSEEEHHHHTTCC-EEECCSSCCC-CCT-T-GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C-
T ss_pred             CcccccChhHcCCCC-EEEccCCCcc-cCh-h-hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e-
Confidence            334556778899999 7999999999 566 3 45899999999999999864 2  88999999999999998853 3 


Q ss_pred             CccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCC
Q 043347          100 DLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLP  179 (385)
Q Consensus       100 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~  179 (385)
                       +..+++|++|++++|.+.+ ++  ++.+++|+.|++++|.++..   .+..+++|+++++++|...+.+    .+..++
T Consensus       102 -~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~----~~~~l~  170 (457)
T 3bz5_A          102 -VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL----DVTPQT  170 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC----CCTTCT
T ss_pred             -cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc----ccccCC
Confidence             8899999999999999885 33  88999999999999998864   3788999999999999654443    266889


Q ss_pred             CCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCc
Q 043347          180 NLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSL  259 (385)
Q Consensus       180 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L  259 (385)
                      +|++|++++|.+++. +  +..+++|+.|++++|.++..   .+..+++|+.|++++|.++..+         +..+++|
T Consensus       171 ~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---------~~~l~~L  235 (457)
T 3bz5_A          171 QLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---------VTPLTQL  235 (457)
T ss_dssp             TCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---------CTTCTTC
T ss_pred             cCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---------ccccCCC
Confidence            999999999998863 2  77889999999999999865   3788999999999999988742         6778999


Q ss_pred             eEEEccCCCCCCCCCCcccccc------cceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCcc--------c
Q 043347          260 KVIVLAENPVDGVLPSSIGNLS------VSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPI--------T  325 (385)
Q Consensus       260 ~~L~l~~~~~~~~~~~~~~~~~------~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~  325 (385)
                      +.|++++|.+.+..+..+..+.      .+++.+++++|...+.+|  ++.+++|+.|++++|...+.++.        .
T Consensus       236 ~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~  313 (457)
T 3bz5_A          236 TYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD  313 (457)
T ss_dssp             SEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred             CEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence            9999999999876543332210      134445555555444333  46789999999999976554432        2


Q ss_pred             cccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccc
Q 043347          326 LGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSG  368 (385)
Q Consensus       326 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  368 (385)
                      +..+++|+.|++++|++++. +  +..+++|+.|++++|++++
T Consensus       314 l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          314 LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred             hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence            45678999999999999974 3  7889999999999999986

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.8e-29  Score=222.24  Aligned_cols=288  Identities=20%  Similarity=0.229  Sum_probs=174.2

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN  115 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  115 (385)
                      .++++++.++ .+|..+   .+++++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus        35 ~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           35 VVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             EEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             EEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence            6777777777 666644   256777888887777666667777788888888877777666777777778888888777


Q ss_pred             cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC
Q 043347          116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI  195 (385)
Q Consensus       116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  195 (385)
                      .+. .+|..+.  ++|+.|++++|.+....+..+..+++|+.+++++|.+...-.....+..+++|++|+++++.+....
T Consensus       111 ~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~  187 (330)
T 1xku_A          111 QLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP  187 (330)
T ss_dssp             CCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred             cCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence            766 4444433  5777777777777655555566777777777777665421001112444555555555555544221


Q ss_pred             CcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCC
Q 043347          196 PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS  275 (385)
Q Consensus       196 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  275 (385)
                      .. +  .++|++|++++|.+....+..+..+                              ++|+.|++++|.+.+..+.
T Consensus       188 ~~-~--~~~L~~L~l~~n~l~~~~~~~~~~l------------------------------~~L~~L~Ls~n~l~~~~~~  234 (330)
T 1xku_A          188 QG-L--PPSLTELHLDGNKITKVDAASLKGL------------------------------NNLAKLGLSFNSISAVDNG  234 (330)
T ss_dssp             SS-C--CTTCSEEECTTSCCCEECTGGGTTC------------------------------TTCCEEECCSSCCCEECTT
T ss_pred             cc-c--cccCCEEECCCCcCCccCHHHhcCC------------------------------CCCCEEECCCCcCceeChh
Confidence            11 1  1344445554444443333444444                              4444444444444444333


Q ss_pred             cccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCcccccc------CCCCCeEeccCCcccC--CCh
Q 043347          276 SIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGR------LKKLQGLDLQNNKFEG--PIP  347 (385)
Q Consensus       276 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~--~~~  347 (385)
                      .+... +++++|++++|++. .+|..+..+++|++|++++|.+++..+..+..      .+.++.+++++|.+..  ..+
T Consensus       235 ~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~  312 (330)
T 1xku_A          235 SLANT-PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  312 (330)
T ss_dssp             TGGGS-TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             hccCC-CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCc
Confidence            34333 45556666665555 45555667777888888888777554444432      3677888888887643  556


Q ss_pred             hhhhcCCCccEEEccCCc
Q 043347          348 HEFCHFSRLYKFYLNRNK  365 (385)
Q Consensus       348 ~~~~~~~~L~~L~l~~~~  365 (385)
                      ..+..+++++.+++++|+
T Consensus       313 ~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          313 STFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             GGGTTCCCGGGEEC----
T ss_pred             cccccccceeEEEecccC
Confidence            677778888888888874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=4.4e-34  Score=263.64  Aligned_cols=361  Identities=18%  Similarity=0.115  Sum_probs=268.0

Q ss_pred             cCcccEEEecCccccCCCCcc-cccccceeceeEeecCccccCC---ChhhhcCCCcccEEEccCCcccCcCCCCc-cCC
Q 043347            6 LAELEVLVLNNNLLTGTIPAS-IFNLSSISTGLDFSNNSLTGSF---PDDMCEGLPRLKGLYVSYNQFKGPIPNNL-WHC   80 (385)
Q Consensus         6 ~~~l~~L~l~~~~~~~~~~~~-~~~~~~l~~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~   80 (385)
                      .+++++|+++++.+.+..... +..+++++ .|++++|.+++..   -..++..+++|++|++++|.+.+.....+ ..+
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~-~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQ-VVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCS-EEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCcc-EEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            468999999999987544333 67788888 7999999987321   12344578999999999998864332222 233


Q ss_pred             C----CCcEEecccccccc----cCCCCccCcccccEEEeecccccCCCCccc-----CCCcCCcEEEeccccccccc--
Q 043347           81 K----ELSRVSLSFNQFTG----RIPRDLGNSTKLKLLYLSFNNLIGEIPQEI-----GSLRNLEILRIDQNNLVGFI--  145 (385)
Q Consensus        81 ~----~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~--  145 (385)
                      +    +|++|++++|.+..    ..+..+..+++|++|++++|.+.+..+..+     ...++|++|++++|.++...  
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence            3    79999999998874    346778899999999999998765433332     23568999999999887643  


Q ss_pred             --CccccCCCCCcEEEccCCcccccCCCCc---ccCCCCCCceEEccccccCCC----CCcccccCCcccEEEccCcccc
Q 043347          146 --PDTIFNMSTLKTLSLLNNTLSGNLPSSK---KLIGLPNLEGLILGLNNFSGS----IPSFFFNASKLYYLELAYNSFS  216 (385)
Q Consensus       146 --~~~~~~l~~L~~l~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~  216 (385)
                        +..+..+++|++|++++|.+.+......   .....++|++|++++|.++..    .+..+..+++|++|++++|.+.
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence              4556678999999999998754211110   011356899999999988753    3556677899999999999876


Q ss_pred             ccCc-----ccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccc----cccceeEE
Q 043347          217 GLIP-----KALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGN----LSVSVEEI  287 (385)
Q Consensus       217 ~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~l~~L  287 (385)
                      +...     ..+..+++|+.|++++|.++....  ..+...+..+++|+.|++++|.+.+..+..+..    ..+++++|
T Consensus       241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L  318 (461)
T 1z7x_W          241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGC--GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL  318 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH--HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH--HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence            5432     223357899999999998875432  224456788999999999999886544333322    12589999


Q ss_pred             EeeccccCCC----CCccccCCCCccEEECcCccccCCCcccccc-----CCCCCeEeccCCcccC----CChhhhhcCC
Q 043347          288 YMYKCNIHGR----IPKEIGNLINLTKLSLGYNNLSGSLPITLGR-----LKKLQGLDLQNNKFEG----PIPHEFCHFS  354 (385)
Q Consensus       288 ~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~  354 (385)
                      ++++|.+.+.    ++.++..+++|++|++++|.+.+..+..+..     +++|+.|++++|.+++    .++..+..++
T Consensus       319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  398 (461)
T 1z7x_W          319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH  398 (461)
T ss_dssp             ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred             EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence            9999998765    3455667899999999999987654444432     6799999999999986    5677788899


Q ss_pred             CccEEEccCCccccc
Q 043347          355 RLYKFYLNRNKLSGS  369 (385)
Q Consensus       355 ~L~~L~l~~~~~~~~  369 (385)
                      +|++|++++|++++.
T Consensus       399 ~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          399 SLRELDLSNNCLGDA  413 (461)
T ss_dssp             CCCEEECCSSSCCHH
T ss_pred             CccEEECCCCCCCHH
Confidence            999999999998865

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2e-29  Score=221.93  Aligned_cols=295  Identities=21%  Similarity=0.240  Sum_probs=233.5

Q ss_pred             cccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEe
Q 043347            8 ELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVS   87 (385)
Q Consensus         8 ~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~   87 (385)
                      +++.++++++.++ .+|..+.  +.++ .|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~-~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTA-LLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCC-EEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCe-EEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            7899999999887 6776553  4566 8999999999 77777777999999999999999987788999999999999


Q ss_pred             cccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEeccccccc--ccCccccCCCCCcEEEccCCcc
Q 043347           88 LSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVG--FIPDTIFNMSTLKTLSLLNNTL  165 (385)
Q Consensus        88 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~l~l~~~~~  165 (385)
                      +++|.+. .+|..+.  ++|++|++++|.+....+..+..+++|+.|++++|.+..  ..+..+..+++|+.+++++|.+
T Consensus       107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            9999987 5665553  899999999999987777779999999999999998864  5567788999999999999988


Q ss_pred             cccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchh
Q 043347          166 SGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSE  245 (385)
Q Consensus       166 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  245 (385)
                      .. +|..    ..++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+...+  
T Consensus       184 ~~-l~~~----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp--  256 (330)
T 1xku_A          184 TT-IPQG----LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP--  256 (330)
T ss_dssp             CS-CCSS----CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC--
T ss_pred             cc-CCcc----ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCC--
Confidence            74 4432    2379999999999998777788999999999999999998777778889999999999999888643  


Q ss_pred             hhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccC--CCc
Q 043347          246 LMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSG--SLP  323 (385)
Q Consensus       246 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~  323 (385)
                           ..+..+++|+.|++++|.+.+..+..+...                   ......+.++.+++++|.+..  ..+
T Consensus       257 -----~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~-------------------~~~~~~~~l~~l~l~~N~~~~~~i~~  312 (330)
T 1xku_A          257 -----GGLADHKYIQVVYLHNNNISAIGSNDFCPP-------------------GYNTKKASYSGVSLFSNPVQYWEIQP  312 (330)
T ss_dssp             -----TTTTTCSSCCEEECCSSCCCCCCTTSSSCS-------------------SCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             -----hhhccCCCcCEEECCCCcCCccChhhcCCc-------------------ccccccccccceEeecCcccccccCc
Confidence                 356778899999999998876555443221                   001123466677777776542  344


Q ss_pred             cccccCCCCCeEeccCCc
Q 043347          324 ITLGRLKKLQGLDLQNNK  341 (385)
Q Consensus       324 ~~~~~~~~L~~L~l~~~~  341 (385)
                      ..+..+++++.+++++|+
T Consensus       313 ~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          313 STFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             GGGTTCCCGGGEEC----
T ss_pred             cccccccceeEEEecccC
Confidence            556666677777776653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.5e-29  Score=222.95  Aligned_cols=285  Identities=21%  Similarity=0.251  Sum_probs=175.0

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN  115 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  115 (385)
                      .++++++.++ .+|..+.   +++++|++++|.+.+..+..|..+++|++|++++|.+....|..+.++++|++|++++|
T Consensus        37 ~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           37 VVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             EEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             EEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            6777777777 7776553   57777888777777666667777778888888777777666667777777888887777


Q ss_pred             cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccc--cCCCCcccCCCCCCceEEccccccCC
Q 043347          116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSG--NLPSSKKLIGLPNLEGLILGLNNFSG  193 (385)
Q Consensus       116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~  193 (385)
                      .+. .+|..+.  ++|++|++++|.+....+..+..+++|+.|++++|.+..  ..+.  .+..+ +|++|++++|.+..
T Consensus       113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG--AFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT--SSCSC-CCSCCBCCSSBCSS
T ss_pred             cCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc--cccCC-ccCEEECcCCCCCc
Confidence            766 4444433  677777777777765555566777777777777776642  2111  13333 56666666665553


Q ss_pred             CCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCC
Q 043347          194 SIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVL  273 (385)
Q Consensus       194 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  273 (385)
                      ... .+.  ++|++|++++|.+....+..+..+++|+.|++++|.+..                              ..
T Consensus       187 l~~-~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~------------------------------~~  233 (332)
T 2ft3_A          187 IPK-DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM------------------------------IE  233 (332)
T ss_dssp             CCS-SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC------------------------------CC
T ss_pred             cCc-ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc------------------------------CC
Confidence            222 111  455555555555554444445555555555555554444                              33


Q ss_pred             CCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCcccccc------CCCCCeEeccCCccc--CC
Q 043347          274 PSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGR------LKKLQGLDLQNNKFE--GP  345 (385)
Q Consensus       274 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~  345 (385)
                      +..+... +++++|++++|++. .+|..+..+++|+.|++++|.+++..+..+..      .++|+.|++.+|.+.  +.
T Consensus       234 ~~~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~  311 (332)
T 2ft3_A          234 NGSLSFL-PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV  311 (332)
T ss_dssp             TTGGGGC-TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS
T ss_pred             hhHhhCC-CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccccc
Confidence            3333333 45555555555554 34455666777777777777776544444433      356778888888765  46


Q ss_pred             ChhhhhcCCCccEEEccCCc
Q 043347          346 IPHEFCHFSRLYKFYLNRNK  365 (385)
Q Consensus       346 ~~~~~~~~~~L~~L~l~~~~  365 (385)
                      .+..+..+++|+.+++++|+
T Consensus       312 ~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          312 QPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CGGGGTTBCCSTTEEC----
T ss_pred             Ccccccccchhhhhhccccc
Confidence            66777778888888887764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.1e-29  Score=223.73  Aligned_cols=294  Identities=23%  Similarity=0.265  Sum_probs=233.5

Q ss_pred             cccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEe
Q 043347            8 ELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVS   87 (385)
Q Consensus         8 ~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~   87 (385)
                      +++.++++++.+. .+|..+.  +.++ .|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~-~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTT-LLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCC-EEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCe-EEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            7999999999987 7777664  4666 8999999999 67666677999999999999999977788999999999999


Q ss_pred             cccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEeccccccc--ccCccccCCCCCcEEEccCCcc
Q 043347           88 LSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVG--FIPDTIFNMSTLKTLSLLNNTL  165 (385)
Q Consensus        88 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~l~l~~~~~  165 (385)
                      +++|.+. .+|..+.  ++|++|++++|.+....+..+..+++|+.|++++|.+..  ..+..+..+ +|+.+++++|.+
T Consensus       109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            9999988 5666554  899999999999986666779999999999999999864  455666667 999999999998


Q ss_pred             cccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchh
Q 043347          166 SGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSE  245 (385)
Q Consensus       166 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  245 (385)
                      .. +|..    ..++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+...+  
T Consensus       185 ~~-l~~~----~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp--  257 (332)
T 2ft3_A          185 TG-IPKD----LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP--  257 (332)
T ss_dssp             SS-CCSS----SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC--
T ss_pred             Cc-cCcc----ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC--
Confidence            74 4432    2378999999999998777788999999999999999998877778899999999999999988643  


Q ss_pred             hhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCcccc--CCCc
Q 043347          246 LMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLS--GSLP  323 (385)
Q Consensus       246 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~  323 (385)
                           ..+..+++|+.|++++|.+.+..+..+....                 +  ....+.|+.|++++|.+.  +..+
T Consensus       258 -----~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-----------------~--~~~~~~l~~L~l~~N~~~~~~~~~  313 (332)
T 2ft3_A          258 -----AGLPDLKLLQVVYLHTNNITKVGVNDFCPVG-----------------F--GVKRAYYNGISLFNNPVPYWEVQP  313 (332)
T ss_dssp             -----TTGGGCTTCCEEECCSSCCCBCCTTSSSCSS-----------------C--CSSSCCBSEEECCSSSSCGGGSCG
T ss_pred             -----hhhhcCccCCEEECCCCCCCccChhHccccc-----------------c--ccccccccceEeecCcccccccCc
Confidence                 3577889999999999988866554443220                 0  011346667777777655  3455


Q ss_pred             cccccCCCCCeEeccCCc
Q 043347          324 ITLGRLKKLQGLDLQNNK  341 (385)
Q Consensus       324 ~~~~~~~~L~~L~l~~~~  341 (385)
                      ..+..+++|+.+++++|+
T Consensus       314 ~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          314 ATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGGTTBCCSTTEEC----
T ss_pred             ccccccchhhhhhccccc
Confidence            566667777777776653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.97  E-value=2.2e-28  Score=223.55  Aligned_cols=273  Identities=25%  Similarity=0.340  Sum_probs=155.0

Q ss_pred             CcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEe
Q 043347           57 PRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRI  136 (385)
Q Consensus        57 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  136 (385)
                      ++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+ +|..+   .+|++|++++|.+.+ +| .++.+++|+.|++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            355555555555543 23 35555555555555555542 33222   355555555555543 33 3555666666666


Q ss_pred             cccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCcccc
Q 043347          137 DQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFS  216 (385)
Q Consensus       137 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  216 (385)
                      ++|.+.. .+..   .++|++|++++|.+. .+|.   +..+++|++|++++|.+.+. +.   .+++|++|++++|.+.
T Consensus       203 ~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~---~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~  270 (454)
T 1jl5_A          203 DNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE---LQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLT  270 (454)
T ss_dssp             CSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC---CTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCS
T ss_pred             CCCcCCc-CCCC---cCcccEEECcCCcCC-cccc---cCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCccc
Confidence            6655542 2211   235666666666554 3332   45666667777766665532 21   1356677777766665


Q ss_pred             ccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCC
Q 043347          217 GLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHG  296 (385)
Q Consensus       217 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~  296 (385)
                      +. +.   .+++|+.|++++|.++..+.          ..++|+.|++++|.+.+.     ...+.++++|++++|++.+
T Consensus       271 ~l-~~---~~~~L~~L~ls~N~l~~l~~----------~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~  331 (454)
T 1jl5_A          271 DL-PE---LPQSLTFLDVSENIFSGLSE----------LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE  331 (454)
T ss_dssp             CC-CC---CCTTCCEEECCSSCCSEESC----------CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC
T ss_pred             cc-Cc---ccCcCCEEECcCCccCcccC----------cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc
Confidence            42 22   23677788888777665321          126899999999988752     2233689999999999885


Q ss_pred             CCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccC--CChhhhhcC-------------CCccEEEc
Q 043347          297 RIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEG--PIPHEFCHF-------------SRLYKFYL  361 (385)
Q Consensus       297 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~-------------~~L~~L~l  361 (385)
                       +|..   +++|+.|++++|.+. .+|.   .+++|+.|++++|++++  ..|..+..+             ++|+.|++
T Consensus       332 -lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~l  403 (454)
T 1jl5_A          332 -LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHV  403 (454)
T ss_dssp             -CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------
T ss_pred             -cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEEC
Confidence             4443   579999999999998 4565   47899999999999987  677777766             88999999


Q ss_pred             cCCcccc--cCCCcccc
Q 043347          362 NRNKLSG--SIPSCLGD  376 (385)
Q Consensus       362 ~~~~~~~--~~~~~~~~  376 (385)
                      ++|++++  .+|..+..
T Consensus       404 s~N~l~~~~~iP~sl~~  420 (454)
T 1jl5_A          404 ETNPLREFPDIPESVED  420 (454)
T ss_dssp             -----------------
T ss_pred             CCCcCCccccchhhHhh
Confidence            9999987  56765543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.8e-33  Score=259.55  Aligned_cols=366  Identities=18%  Similarity=0.161  Sum_probs=272.5

Q ss_pred             CCCcCcccEEEecCccccC----CCCcccccccceeceeEeecCccccCCChhhhcCCC----cccEEEccCCcccC---
Q 043347            3 LGNLAELEVLVLNNNLLTG----TIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLP----RLKGLYVSYNQFKG---   71 (385)
Q Consensus         3 ~~~~~~l~~L~l~~~~~~~----~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~---   71 (385)
                      +..+++|++|++++|.+.+    .++..+..+++++ +|++++|.+++..+..++..++    +|++|++++|.+..   
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~-~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~  102 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA-ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  102 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCC-EEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcC-EEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence            4568999999999999874    3456677888998 7999999998555556665666    79999999999874   


Q ss_pred             -cCCCCccCCCCCcEEecccccccccCCCCc-----cCcccccEEEeecccccCCC----CcccCCCcCCcEEEeccccc
Q 043347           72 -PIPNNLWHCKELSRVSLSFNQFTGRIPRDL-----GNSTKLKLLYLSFNNLIGEI----PQEIGSLRNLEILRIDQNNL  141 (385)
Q Consensus        72 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~  141 (385)
                       .++..+..+++|++|++++|.+.+..+..+     ...++|++|++++|.+.+..    +..+..+++|++|++++|.+
T Consensus       103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  182 (461)
T 1z7x_W          103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI  182 (461)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence             346678899999999999998874433332     23568999999999887543    45566789999999999998


Q ss_pred             ccccCcccc-----CCCCCcEEEccCCcccccCC--CCcccCCCCCCceEEccccccCCCC-----CcccccCCcccEEE
Q 043347          142 VGFIPDTIF-----NMSTLKTLSLLNNTLSGNLP--SSKKLIGLPNLEGLILGLNNFSGSI-----PSFFFNASKLYYLE  209 (385)
Q Consensus       142 ~~~~~~~~~-----~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~  209 (385)
                      .......+.     ..++|++|++++|.+...-.  -...+..+++|++|++++|.+.+..     ...+..+++|++|+
T Consensus       183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~  262 (461)
T 1z7x_W          183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW  262 (461)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence            765444443     36699999999998764210  0112557899999999999876322     22233578999999


Q ss_pred             ccCcccccc----CcccccCCCCccEEEecCCcccccchhhhhhhHhhh-cccCceEEEccCCCCCCCC----CCccccc
Q 043347          210 LAYNSFSGL----IPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALV-NCKSLKVIVLAENPVDGVL----PSSIGNL  280 (385)
Q Consensus       210 l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~----~~~~~~~  280 (385)
                      +++|.+++.    .+..+..+++|+.|++++|.+.+.+..  .+...+. ..++|+.|++++|.+.+..    +..+...
T Consensus       263 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~--~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  340 (461)
T 1z7x_W          263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR--LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN  340 (461)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH--HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred             CcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH--HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhC
Confidence            999988754    355566789999999999987654321  1222332 3369999999999987653    3333333


Q ss_pred             ccceeEEEeeccccCCCCCccccC-----CCCccEEECcCccccC----CCccccccCCCCCeEeccCCcccCCChhhhh
Q 043347          281 SVSVEEIYMYKCNIHGRIPKEIGN-----LINLTKLSLGYNNLSG----SLPITLGRLKKLQGLDLQNNKFEGPIPHEFC  351 (385)
Q Consensus       281 ~~~l~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  351 (385)
                       +++++|++++|.+.+..+..+..     .++|++|++++|.+++    .++..+..+++|+.|++++|++++.....+.
T Consensus       341 -~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~  419 (461)
T 1z7x_W          341 -RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV  419 (461)
T ss_dssp             -SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHH
T ss_pred             -CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHH
Confidence             79999999999887654444432     6799999999999985    5777888899999999999999865444443


Q ss_pred             c-----CCCccEEEccCCcccccCCC
Q 043347          352 H-----FSRLYKFYLNRNKLSGSIPS  372 (385)
Q Consensus       352 ~-----~~~L~~L~l~~~~~~~~~~~  372 (385)
                      .     ..+|+.|++.++.+....+.
T Consensus       420 ~~l~~~~~~L~~L~~~~~~~~~~~~~  445 (461)
T 1z7x_W          420 ESVRQPGCLLEQLVLYDIYWSEEMED  445 (461)
T ss_dssp             HHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred             HHhccCCcchhheeecccccCHHHHH
Confidence            2     34699999998877654443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=2.3e-29  Score=219.44  Aligned_cols=249  Identities=27%  Similarity=0.443  Sum_probs=162.9

Q ss_pred             CcccEEEccCCcccC--cCCCCccCCCCCcEEeccc-ccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcE
Q 043347           57 PRLKGLYVSYNQFKG--PIPNNLWHCKELSRVSLSF-NQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEI  133 (385)
Q Consensus        57 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  133 (385)
                      .++++|+++++.+.+  ..+..+..+++|++|++++ +.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467777777777766  5666777777777777774 6666666767777777777777777776666667777777777


Q ss_pred             EEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCC-CCceEEccccccCCCCCcccccCCcccEEEccC
Q 043347          134 LRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLP-NLEGLILGLNNFSGSIPSFFFNASKLYYLELAY  212 (385)
Q Consensus       134 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  212 (385)
                      |++++|.+....+..+..+++|++|++++|.+.+..|..  +..++ .|++|++++|.+.+..+..+..++ |++|++++
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS--YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG--GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH--HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            777777766666666667777777777777665444432  33444 556666665555544444444444 56666666


Q ss_pred             ccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeecc
Q 043347          213 NSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKC  292 (385)
Q Consensus       213 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~  292 (385)
                      |.+.+..+..+..+++|+.|++++|.+..                              ..+. +... +++++|++++|
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------------~~~~-~~~l-~~L~~L~Ls~N  254 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAF------------------------------DLGK-VGLS-KNLNGLDLRNN  254 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECC------------------------------BGGG-CCCC-TTCCEEECCSS
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceee------------------------------ecCc-cccc-CCCCEEECcCC
Confidence            55554445555555555555555555442                              2222 2222 56666666666


Q ss_pred             ccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCc
Q 043347          293 NIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNK  341 (385)
Q Consensus       293 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  341 (385)
                      ++.+..|.++..+++|++|++++|.+++.+|.. ..+++|+.+++++|+
T Consensus       255 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             cccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            666667777778888888888888888777765 678888888888886

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=5.6e-29  Score=216.97  Aligned_cols=249  Identities=29%  Similarity=0.381  Sum_probs=177.9

Q ss_pred             ccccEEEeecccccC--CCCcccCCCcCCcEEEecc-cccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCC
Q 043347          105 TKLKLLYLSFNNLIG--EIPQEIGSLRNLEILRIDQ-NNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL  181 (385)
Q Consensus       105 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L  181 (385)
                      .++++|+++++.+.+  .+|..+..+++|++|++++ +.+....+..+..+++|++|++++|.+.+..|..  +..+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF--LSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG--GGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH--HhCCCCC
Confidence            578899999998887  7888888999999999985 7777777888888899999999888887665543  6677888


Q ss_pred             ceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCC-CccEEEecCCcccccchhhhhhhHhhhcccCce
Q 043347          182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLR-NLERLGLQSNYLTSSTSELMSLFSALVNCKSLK  260 (385)
Q Consensus       182 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~  260 (385)
                      ++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+....      +..+..++ |+
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~------~~~~~~l~-L~  200 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI------PPTFANLN-LA  200 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC------CGGGGGCC-CS
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC------ChHHhCCc-cc
Confidence            8888888887766777777788888888888877756666676666 7788888777766432      23444444 77


Q ss_pred             EEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCC
Q 043347          261 VIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNN  340 (385)
Q Consensus       261 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  340 (385)
                      .|++++|.+.+..+..+... ++++.|++++|++.+..+. +..+++|++|++++|.+.+..|..+..+++|+.|++++|
T Consensus       201 ~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          201 FVDLSRNMLEGDASVLFGSD-KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             EEECCSSEEEECCGGGCCTT-SCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             EEECcCCcccCcCCHHHhcC-CCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence            77777777666555555555 5666666666666544433 555666666666666666666666666666666666666


Q ss_pred             cccCCChhhhhcCCCccEEEccCCc
Q 043347          341 KFEGPIPHEFCHFSRLYKFYLNRNK  365 (385)
Q Consensus       341 ~~~~~~~~~~~~~~~L~~L~l~~~~  365 (385)
                      ++++..|.. ..+++|+.+++++|+
T Consensus       279 ~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          279 NLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             cccccCCCC-ccccccChHHhcCCC
Confidence            666555554 556666666666665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.1e-27  Score=209.87  Aligned_cols=281  Identities=20%  Similarity=0.207  Sum_probs=173.9

Q ss_pred             cccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCccccc
Q 043347           29 NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLK  108 (385)
Q Consensus        29 ~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  108 (385)
                      .|+..- ..+++++.++ .+|..+.   ++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+.++++|+
T Consensus        29 ~C~~~~-~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (353)
T 2z80_A           29 SCDRNG-ICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE  103 (353)
T ss_dssp             EECTTS-EEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCe-EeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence            344444 4677777777 6776553   4677777777777655555677777777777777777655556677777777


Q ss_pred             EEEeecccccCCCCcccCCCcCCcEEEecccccccccC-ccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEcc
Q 043347          109 LLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIP-DTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILG  187 (385)
Q Consensus       109 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  187 (385)
                      +|++++|.+.+..+..+..+++|++|++++|.+..... ..+..+++|++|++++|.                       
T Consensus       104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~-----------------------  160 (353)
T 2z80_A          104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-----------------------  160 (353)
T ss_dssp             EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-----------------------
T ss_pred             EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc-----------------------
Confidence            77777777664333346666777777776666653332 244555555555555542                       


Q ss_pred             ccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCC
Q 043347          188 LNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAEN  267 (385)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  267 (385)
                        .+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+...+.      ..+..+++|+.|++++|
T Consensus       161 --~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~------~~~~~~~~L~~L~L~~n  232 (353)
T 2z80_A          161 --TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE------IFVDVTSSVECLELRDT  232 (353)
T ss_dssp             --SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH------HHHHHTTTEEEEEEESC
T ss_pred             --cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh------hhhhhcccccEEECCCC
Confidence              1222223445556667777777766665556667777777777777777654322      22345677777777777


Q ss_pred             CCCCCCCCcccc--cccceeEEEeeccccCC----CCCccccCCCCccEEECcCccccCCCccc-cccCCCCCeEeccCC
Q 043347          268 PVDGVLPSSIGN--LSVSVEEIYMYKCNIHG----RIPKEIGNLINLTKLSLGYNNLSGSLPIT-LGRLKKLQGLDLQNN  340 (385)
Q Consensus       268 ~~~~~~~~~~~~--~~~~l~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~  340 (385)
                      .+.+..+..+..  ....++.+++.++.+.+    .+|.++..+++|++|++++|.++ .+|.. +..+++|+.|++++|
T Consensus       233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCC
Confidence            776544333221  12455666666665543    24555677778888888888877 44443 467788888888888


Q ss_pred             cccCCC
Q 043347          341 KFEGPI  346 (385)
Q Consensus       341 ~~~~~~  346 (385)
                      ++....
T Consensus       312 ~~~~~~  317 (353)
T 2z80_A          312 PWDCSC  317 (353)
T ss_dssp             CBCCCH
T ss_pred             CccCcC
Confidence            777443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.3e-27  Score=212.30  Aligned_cols=285  Identities=18%  Similarity=0.186  Sum_probs=215.2

Q ss_pred             CCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCC
Q 043347            4 GNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKEL   83 (385)
Q Consensus         4 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L   83 (385)
                      ..|+.....+.+++.++ .+|..+.  ++++ +|+++++.++ .++...+..+++|++|++++|.+.+..+..|..+++|
T Consensus        28 ~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~-~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (353)
T 2z80_A           28 LSCDRNGICKGSSGSLN-SIPSGLT--EAVK-SLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL  102 (353)
T ss_dssp             CEECTTSEEECCSTTCS-SCCTTCC--TTCC-EEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCCCeEeeCCCCCcc-ccccccc--ccCc-EEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence            34677777888888888 7887665  3666 8999999999 7777777799999999999999997778889999999


Q ss_pred             cEEecccccccccCCCCccCcccccEEEeecccccCCCC-cccCCCcCCcEEEeccc-ccccccCccccCCCCCcEEEcc
Q 043347           84 SRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP-QEIGSLRNLEILRIDQN-NLVGFIPDTIFNMSTLKTLSLL  161 (385)
Q Consensus        84 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~l~l~  161 (385)
                      ++|++++|.+....+..+.++++|++|++++|.+....+ ..+..+++|+.|++++| .+....+..+..+++|++|+++
T Consensus       103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  182 (353)
T 2z80_A          103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID  182 (353)
T ss_dssp             CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence            999999999985444458899999999999999884433 47889999999999998 4666667788899999999999


Q ss_pred             CCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccc---cCCCCccEEEecCCc
Q 043347          162 NNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKAL---GQLRNLERLGLQSNY  238 (385)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~  238 (385)
                      +|.+.+..+..  +..+++|++|++++|.+.......+..+++|++|++++|.+.+.....+   ...+.++.++++++.
T Consensus       183 ~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~  260 (353)
T 2z80_A          183 ASDLQSYEPKS--LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK  260 (353)
T ss_dssp             ETTCCEECTTT--TTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred             CCCcCccCHHH--HhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc
Confidence            99887654443  6678888999998888764434445567888888888888775443322   235567777777776


Q ss_pred             ccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccc
Q 043347          239 LTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNL  318 (385)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  318 (385)
                      +.+.  ....++..+..+++|+.|++++|.+.                         ......+..+++|++|++++|++
T Consensus       261 l~~~--~l~~l~~~l~~l~~L~~L~Ls~N~l~-------------------------~i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          261 ITDE--SLFQVMKLLNQISGLLELEFSRNQLK-------------------------SVPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             CCHH--HHHHHHHHHHTCTTCCEEECCSSCCC-------------------------CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ccCc--chhhhHHHHhcccCCCEEECCCCCCC-------------------------ccCHHHHhcCCCCCEEEeeCCCc
Confidence            5542  22223445666666666666665544                         22223357789999999999998


Q ss_pred             cCCC
Q 043347          319 SGSL  322 (385)
Q Consensus       319 ~~~~  322 (385)
                      ....
T Consensus       314 ~~~~  317 (353)
T 2z80_A          314 DCSC  317 (353)
T ss_dssp             CCCH
T ss_pred             cCcC
Confidence            8543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=5.4e-27  Score=204.23  Aligned_cols=226  Identities=23%  Similarity=0.284  Sum_probs=114.3

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEeccccccccc--CCCCccCcccccEEEee
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR--IPRDLGNSTKLKLLYLS  113 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~  113 (385)
                      .++++++.++ .+|..+.   ++|++|++++|.+.......|..+++|++|++++|.+...  .+..+..+++|++|+++
T Consensus        11 ~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           11 EIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             EEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             EEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            4566666665 5555432   4566666666666544444456666666666666655421  13334455666666666


Q ss_pred             cccccCCCCcccCCCcCCcEEEecccccccccC-ccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccC
Q 043347          114 FNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIP-DTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFS  192 (385)
Q Consensus       114 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  192 (385)
                      +|.+. .++..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+....+..  +..+++|++|++++|.+.
T Consensus        87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--FNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT--TTTCTTCCEEECTTCEEG
T ss_pred             CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh--cccCcCCCEEECCCCccc
Confidence            66554 344445555666666666555543322 34445555555555555544332221  334445555555555443


Q ss_pred             C-CCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCC
Q 043347          193 G-SIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDG  271 (385)
Q Consensus       193 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  271 (385)
                      + ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+...+.      ..+..+++|+.|++++|.+.+
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT------FPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS------GGGTTCTTCCEEECTTSCCCB
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh------hhccCcccCCEeECCCCCCcc
Confidence            2 233444445555555555555544444445555555555555555444322      123344444444444444443


Q ss_pred             CCC
Q 043347          272 VLP  274 (385)
Q Consensus       272 ~~~  274 (385)
                      ..+
T Consensus       238 ~~~  240 (306)
T 2z66_A          238 SKK  240 (306)
T ss_dssp             CSS
T ss_pred             cCH
Confidence            333

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.3e-26  Score=201.77  Aligned_cols=282  Identities=20%  Similarity=0.227  Sum_probs=170.1

Q ss_pred             cEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCC--CCcccCCCcCCcEEEec
Q 043347           60 KGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGE--IPQEIGSLRNLEILRID  137 (385)
Q Consensus        60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~  137 (385)
                      +.++.+++.++ .++..+  .+++++|++++|.+....+..+.++++|++|++++|.+...  .+..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            45677776665 333333  25788888888877743334467788888888887776522  24455567777777777


Q ss_pred             ccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccc
Q 043347          138 QNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSG  217 (385)
Q Consensus       138 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  217 (385)
                      +|.+.. .+..+..+++|++|++++|.+....+ ...+..+++|++|++++|.+....+..+..+++|++|++++|.+.+
T Consensus        87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             SCSEEE-EEEEEETCTTCCEEECTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCcccc-ChhhcCCCCCCCEEECCCCccccccc-chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence            777663 44446667777777777766653221 1124455556666665555544444444555555555555555443


Q ss_pred             -cCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCC
Q 043347          218 -LIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHG  296 (385)
Q Consensus       218 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~  296 (385)
                       ..+..+..+++|+.|+                              +++|.+.+..+..+... +++++|++++|++.+
T Consensus       165 ~~~~~~~~~l~~L~~L~------------------------------Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~  213 (306)
T 2z66_A          165 NFLPDIFTELRNLTFLD------------------------------LSQCQLEQLSPTAFNSL-SSLQVLNMSHNNFFS  213 (306)
T ss_dssp             GEECSCCTTCTTCCEEE------------------------------CTTSCCCEECTTTTTTC-TTCCEEECTTSCCSB
T ss_pred             ccchhHHhhCcCCCEEE------------------------------CCCCCcCCcCHHHhcCC-CCCCEEECCCCccCc
Confidence             2333444444444444                              44444444444444433 456666666666655


Q ss_pred             CCCccccCCCCccEEECcCccccCCCccccccCC-CCCeEeccCCcccCCCh--hhhhcCCCccEEEccCCcccccCCCc
Q 043347          297 RIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLK-KLQGLDLQNNKFEGPIP--HEFCHFSRLYKFYLNRNKLSGSIPSC  373 (385)
Q Consensus       297 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~  373 (385)
                      ..+..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|++...-.  .....+...+.+.+..+.+....|..
T Consensus       214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~  293 (306)
T 2z66_A          214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD  293 (306)
T ss_dssp             CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred             cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence            5555677788899999999988877777787774 89999999998874322  11222344455556666777777776


Q ss_pred             cccc
Q 043347          374 LGDL  377 (385)
Q Consensus       374 ~~~l  377 (385)
                      +.+.
T Consensus       294 ~~g~  297 (306)
T 2z66_A          294 KQGM  297 (306)
T ss_dssp             GTTC
T ss_pred             hCCc
Confidence            6654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.2e-26  Score=198.27  Aligned_cols=224  Identities=23%  Similarity=0.232  Sum_probs=147.4

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN  115 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  115 (385)
                      .++++++.++ .+|..+   .++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        15 ~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            4666666666 666543   356777777777766555566677777777777777666555666777777777777777


Q ss_pred             c-ccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCC
Q 043347          116 N-LIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGS  194 (385)
Q Consensus       116 ~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  194 (385)
                      . +....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+.  .+..+++|++|++++|.+...
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD--TFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCEE
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh--HhccCCCccEEECCCCccccc
Confidence            5 5544456666777777777777776655566666677777777777766533222  155666777777777766654


Q ss_pred             CCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCC
Q 043347          195 IPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDG  271 (385)
Q Consensus       195 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  271 (385)
                      ....+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+...+.      ..+..+++|+.|++++|++..
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT------EALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH------HHHTTCTTCCEEECCSSCEEC
T ss_pred             CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH------HHcccCcccCEEeccCCCccC
Confidence            45556667777777777777766656667777777777777777665432      345666777777777776653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.5e-25  Score=196.42  Aligned_cols=222  Identities=22%  Similarity=0.290  Sum_probs=130.3

Q ss_pred             CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEE
Q 043347            7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRV   86 (385)
Q Consensus         7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L   86 (385)
                      +++++|+++++.+. .+|..++++++++ +|++++|.++ .+|..+. .+++|++|++++|.+. .++..+..+++|++|
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~-~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQ-HMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCS-EEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCC-EEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            55666666666665 5666666666666 5666666666 5665443 5666666666666665 445556666666666


Q ss_pred             ecccccccccCCCCccC---------cccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcE
Q 043347           87 SLSFNQFTGRIPRDLGN---------STKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKT  157 (385)
Q Consensus        87 ~l~~~~~~~~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  157 (385)
                      ++++|...+..|..+..         +++|++|++++|.+. .+|..+..+++|+.|++++|.+.. .+..+..+++|++
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~  233 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE  233 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence            66665555555554433         666666666666655 555556666666666666666553 3344555666666


Q ss_pred             EEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCC
Q 043347          158 LSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSN  237 (385)
Q Consensus       158 l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  237 (385)
                      |++++|.+.+..|..  +..+++|++|++++|...+..+..+..+++|++|++++|.+.+..|..+..+++++.+.+..+
T Consensus       234 L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          234 LDLRGCTALRNYPPI--FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             EECTTCTTCCBCCCC--TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             EECcCCcchhhhHHH--hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            666665555444432  445555666666655555445555555555666666555555555555555555555555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=1.3e-29  Score=240.95  Aligned_cols=149  Identities=15%  Similarity=0.109  Sum_probs=82.9

Q ss_pred             CCCCccEEEecCCcccccchhhhhhhHhhhc-ccCceEEEcc----CCCCCCCC-----CCcccccccceeEEEeeccc-
Q 043347          225 QLRNLERLGLQSNYLTSSTSELMSLFSALVN-CKSLKVIVLA----ENPVDGVL-----PSSIGNLSVSVEEIYMYKCN-  293 (385)
Q Consensus       225 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~~-----~~~~~~~~~~l~~L~l~~~~-  293 (385)
                      .+++|+.|+++.+.+++.      .+..+.. +++|+.|+++    .+.+++..     +..+.. .+++++|++++|. 
T Consensus       376 ~~~~L~~L~l~~~~l~~~------~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~-~~~L~~L~L~~~~~  448 (592)
T 3ogk_B          376 GCQELEYMAVYVSDITNE------SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG-CKKLRRFAFYLRQG  448 (592)
T ss_dssp             HCTTCSEEEEEESCCCHH------HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH-CTTCCEEEEECCGG
T ss_pred             hCccCeEEEeecCCccHH------HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh-CCCCCEEEEecCCC
Confidence            345555555544444332      1223332 5666666664    23343321     111222 2567777776543 


Q ss_pred             -cCCCCCcccc-CCCCccEEECcCccccCC-CccccccCCCCCeEeccCCcccCCChhh-hhcCCCccEEEccCCccccc
Q 043347          294 -IHGRIPKEIG-NLINLTKLSLGYNNLSGS-LPITLGRLKKLQGLDLQNNKFEGPIPHE-FCHFSRLYKFYLNRNKLSGS  369 (385)
Q Consensus       294 -~~~~~~~~~~-~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~  369 (385)
                       +.+.....+. .+++|++|++++|.+++. .+..+..+++|+.|++++|.+++..... +..+++|+.|++++|+++..
T Consensus       449 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          449 GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             GCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence             3322222232 367788888888877642 3444567888888888888876443333 34588888888888888765


Q ss_pred             CCCccc-ccccC
Q 043347          370 IPSCLG-DLNSL  380 (385)
Q Consensus       370 ~~~~~~-~l~~L  380 (385)
                      ....+. .++.+
T Consensus       529 ~~~~l~~~~p~l  540 (592)
T 3ogk_B          529 GQDLMQMARPYW  540 (592)
T ss_dssp             CTTGGGGCCTTE
T ss_pred             HHHHHHHhCCCc
Confidence            444332 34443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2e-25  Score=195.58  Aligned_cols=234  Identities=19%  Similarity=0.251  Sum_probs=148.8

Q ss_pred             CCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEE
Q 043347           80 CKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLS  159 (385)
Q Consensus        80 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~  159 (385)
                      ..+++.|+++++.+. .+|..+..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .++..+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            467788888888777 66777777888888888888777 67777777888888888888777 5566677777777777


Q ss_pred             ccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcc
Q 043347          160 LLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL  239 (385)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  239 (385)
                      +++|...+.+|...        ...         .....+..+++|++|++++|.++ ..+..+..+++|+.|++++|.+
T Consensus       157 L~~n~~~~~~p~~~--------~~~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l  218 (328)
T 4fcg_A          157 IRACPELTELPEPL--------AST---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL  218 (328)
T ss_dssp             EEEETTCCCCCSCS--------EEE---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred             CCCCCCccccChhH--------hhc---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence            77766554444321        010         11223455666666666666665 3445566666666666666666


Q ss_pred             cccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCcccc
Q 043347          240 TSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLS  319 (385)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  319 (385)
                      ...+       ..+..+++|+.|++++|.+.+                         ..|..+..+++|++|++++|.+.
T Consensus       219 ~~l~-------~~l~~l~~L~~L~Ls~n~~~~-------------------------~~p~~~~~l~~L~~L~L~~n~~~  266 (328)
T 4fcg_A          219 SALG-------PAIHHLPKLEELDLRGCTALR-------------------------NYPPIFGGRAPLKRLILKDCSNL  266 (328)
T ss_dssp             CCCC-------GGGGGCTTCCEEECTTCTTCC-------------------------BCCCCTTCCCCCCEEECTTCTTC
T ss_pred             CcCc-------hhhccCCCCCEEECcCCcchh-------------------------hhHHHhcCCCCCCEEECCCCCch
Confidence            5432       234455555555555555444                         44445555666666666666666


Q ss_pred             CCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcc
Q 043347          320 GSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKL  366 (385)
Q Consensus       320 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  366 (385)
                      +.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.+++..+.+
T Consensus       267 ~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            56666666666666666666666666666666666666666665433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=3.4e-25  Score=203.33  Aligned_cols=248  Identities=21%  Similarity=0.253  Sum_probs=183.5

Q ss_pred             CCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEcc
Q 043347           82 ELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLL  161 (385)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~  161 (385)
                      ..+.++.++..+. .+|..+.  +++++|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            3466777776666 5666553  688999999998887777888889999999999998887777788888899999998


Q ss_pred             CCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCc-cccccCcccccCCCCccEEEecCCccc
Q 043347          162 NNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYN-SFSGLIPKALGQLRNLERLGLQSNYLT  240 (385)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~  240 (385)
                      +|.+....+.  .+..+++|++|++++|.+.......+..+++|++|++++| .+.......+..+++|+.|++++|.+.
T Consensus       132 ~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          132 DNWLTVIPSG--AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             SSCCSBCCTT--TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCcCCccChh--hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence            8887744332  2667888888888888877666667778888888888874 444444456777888888888888777


Q ss_pred             ccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccC
Q 043347          241 SSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSG  320 (385)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  320 (385)
                      ..+        .+..+++|+.|++++|.+.+..+..+..+ +++++|++++|++.+..+..+..+++|+.|++++|.+.+
T Consensus       210 ~~~--------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  280 (452)
T 3zyi_A          210 DMP--------NLTPLVGLEELEMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS  280 (452)
T ss_dssp             SCC--------CCTTCTTCCEEECTTSCCSEECGGGGTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ccc--------cccccccccEEECcCCcCcccCcccccCc-cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence            542        35667777888888777776666666665 677777777777776666667777777777777777775


Q ss_pred             CCccccccCCCCCeEeccCCccc
Q 043347          321 SLPITLGRLKKLQGLDLQNNKFE  343 (385)
Q Consensus       321 ~~~~~~~~~~~L~~L~l~~~~~~  343 (385)
                      ..+..+..+++|+.|++++|.+.
T Consensus       281 ~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          281 LPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CCTTSSTTCTTCCEEECCSSCEE
T ss_pred             cChHHhccccCCCEEEccCCCcC
Confidence            55556666777777777777654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.5e-25  Score=193.06  Aligned_cols=256  Identities=23%  Similarity=0.273  Sum_probs=145.8

Q ss_pred             cEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCC
Q 043347           84 SRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNN  163 (385)
Q Consensus        84 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~  163 (385)
                      ++++.+++.+. .+|..+  .++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            45566655554 344433  456777777777666555555666667777777666666555556666666666666666


Q ss_pred             c-ccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCccccc
Q 043347          164 T-LSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSS  242 (385)
Q Consensus       164 ~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  242 (385)
                      . +....+..  +..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+                
T Consensus        91 ~~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l----------------  152 (285)
T 1ozn_A           91 AQLRSVDPAT--FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL----------------  152 (285)
T ss_dssp             TTCCCCCTTT--TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC----------------
T ss_pred             CCccccCHHH--hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccC----------------
Confidence            5 33221211  4445555555555555544434444444555555555554443333334444                


Q ss_pred             chhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCC
Q 043347          243 TSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSL  322 (385)
Q Consensus       243 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  322 (385)
                                    ++|+.|++++|.+.+..+..+... +++++|++++|.+.+..+.++..+++|++|++++|.+.+..
T Consensus       153 --------------~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  217 (285)
T 1ozn_A          153 --------------GNLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (285)
T ss_dssp             --------------TTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             --------------CCccEEECCCCcccccCHHHhcCc-cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence                          444444444444443333333333 45666666666665555666777788888888888887655


Q ss_pred             ccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccc
Q 043347          323 PITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGD  376 (385)
Q Consensus       323 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  376 (385)
                      +..+..+++|+.|++++|++....+.. .....++.+..+.+.+....|..+.+
T Consensus       218 ~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g  270 (285)
T 1ozn_A          218 TEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG  270 (285)
T ss_dssp             HHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred             HHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence            566777888888888888776422211 11233455556666676667766543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.3e-25  Score=203.75  Aligned_cols=223  Identities=22%  Similarity=0.193  Sum_probs=100.1

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN  115 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  115 (385)
                      .|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus        68 ~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  146 (440)
T 3zyj_A           68 LLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN  146 (440)
T ss_dssp             EEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred             EEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence            4455555444 333333344455555555554444333344444455555555554444333334444455555555554


Q ss_pred             cccCCCCcccCCCcCCcEEEeccc-ccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCC
Q 043347          116 NLIGEIPQEIGSLRNLEILRIDQN-NLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGS  194 (385)
Q Consensus       116 ~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  194 (385)
                      .+....+..|..+++|+.|+++++ .+....+..+..+++|+.|++++|.+.. +|.   +..+++|++|++++|.+...
T Consensus       147 ~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~---~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN---LTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CCC---CTTCSSCCEEECTTSCCCEE
T ss_pred             cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-ccc---cCCCcccCEEECCCCccCcc
Confidence            444333334444455555555442 2222222334444455555554444431 121   33444445555554444443


Q ss_pred             CCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCC
Q 043347          195 IPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPV  269 (385)
Q Consensus       195 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  269 (385)
                      .+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++..+.      ..+..+++|+.|++++|++
T Consensus       223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH------DLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT------TTTSSCTTCCEEECCSSCE
T ss_pred             ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh------hHhccccCCCEEEcCCCCc
Confidence            34444444445555554444444444444444445555555444443322      2233444444455444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=6e-25  Score=201.67  Aligned_cols=244  Identities=18%  Similarity=0.144  Sum_probs=129.3

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN  115 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  115 (385)
                      .++.++..++ .+|..+.   +++++|++++|.+.+..+..|..+++|++|++++|.+....+..+.++++|++|++++|
T Consensus        58 ~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           58 KVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            3555555555 5554432   45566666666655555555566666666666666555444455556666666666666


Q ss_pred             cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC
Q 043347          116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI  195 (385)
Q Consensus       116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  195 (385)
                      .+....+..+..+++|++|++++|.+....+..+..+++|+.|+++++.....++.. .+..+++|++|++++|.+.+. 
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~-  211 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMCNIKDM-  211 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTSCCSSC-
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCCccccc-
Confidence            555444444555666666666666655444445555666666666553332222221 144555555555555555432 


Q ss_pred             CcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCC
Q 043347          196 PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS  275 (385)
Q Consensus       196 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  275 (385)
                       ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.....      ..+..+++|+.|++++|.+.+..+.
T Consensus       212 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~  284 (452)
T 3zyi_A          212 -PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER------NAFDGLASLVELNLAHNNLSSLPHD  284 (452)
T ss_dssp             -CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT------TTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             -ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH------HHhcCCCCCCEEECCCCcCCccChH
Confidence             124445555555555555555445555555555555555555544322      2344555555555555555544433


Q ss_pred             cccccccceeEEEeeccc
Q 043347          276 SIGNLSVSVEEIYMYKCN  293 (385)
Q Consensus       276 ~~~~~~~~l~~L~l~~~~  293 (385)
                      .+..+ ++++.|++++|.
T Consensus       285 ~~~~l-~~L~~L~L~~Np  301 (452)
T 3zyi_A          285 LFTPL-RYLVELHLHHNP  301 (452)
T ss_dssp             SSTTC-TTCCEEECCSSC
T ss_pred             Hhccc-cCCCEEEccCCC
Confidence            33333 455555555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=5.5e-25  Score=201.19  Aligned_cols=246  Identities=22%  Similarity=0.238  Sum_probs=155.5

Q ss_pred             ccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecc
Q 043347           59 LKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQ  138 (385)
Q Consensus        59 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  138 (385)
                      .+.++..+..++ .+|..+.  ++++.|++++|.+....+..+.++++|++|++++|.+....+..|..+++|+.|++++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            456777666665 4444443  5788888888887766667788888888888888887766667777888888888888


Q ss_pred             cccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccc-cCCCCCcccccCCcccEEEccCccccc
Q 043347          139 NNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNN-FSGSIPSFFFNASKLYYLELAYNSFSG  217 (385)
Q Consensus       139 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~  217 (385)
                      |.++...+..+..+++|++|++++|.+....+.  .+..+++|++|+++++. +.......+..+++|++|++++|.+..
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  199 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY--AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE  199 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTT--TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHH--HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence            887766666677778888888887777643222  25567777777777643 222233455666666666666666653


Q ss_pred             cCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCC
Q 043347          218 LIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGR  297 (385)
Q Consensus       218 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~  297 (385)
                      . + .+..+++|+.|++++|.+....+      ..+..+++|+.|++++|.+.+..+..+..+ ++|+.|++++|++.+.
T Consensus       200 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~  270 (440)
T 3zyj_A          200 I-P-NLTPLIKLDELDLSGNHLSAIRP------GSFQGLMHLQKLWMIQSQIQVIERNAFDNL-QSLVEINLAHNNLTLL  270 (440)
T ss_dssp             C-C-CCTTCSSCCEEECTTSCCCEECT------TTTTTCTTCCEEECTTCCCCEECTTSSTTC-TTCCEEECTTSCCCCC
T ss_pred             c-c-ccCCCcccCEEECCCCccCccCh------hhhccCccCCEEECCCCceeEEChhhhcCC-CCCCEEECCCCCCCcc
Confidence            3 2 35556666666666666555422      345555666666666666555544444444 4555555555555544


Q ss_pred             CCccccCCCCccEEECcCccc
Q 043347          298 IPKEIGNLINLTKLSLGYNNL  318 (385)
Q Consensus       298 ~~~~~~~~~~L~~L~l~~~~~  318 (385)
                      .+..+..+++|+.|++++|.+
T Consensus       271 ~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          271 PHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CTTTTSSCTTCCEEECCSSCE
T ss_pred             ChhHhccccCCCEEEcCCCCc
Confidence            444455555555555555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=3.9e-24  Score=201.30  Aligned_cols=262  Identities=25%  Similarity=0.278  Sum_probs=173.1

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN  115 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  115 (385)
                      .|+++++.++ .+|..+.   ++|++|++++|.++ .++.   .+++|++|++++|.+. .+|.   .+++|++|++++|
T Consensus        44 ~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N  111 (622)
T 3g06_A           44 VLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSN  111 (622)
T ss_dssp             EEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSC
T ss_pred             EEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCC
Confidence            6888888888 7777663   68888888888877 3333   4678888888888876 4454   5688888888888


Q ss_pred             cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC
Q 043347          116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI  195 (385)
Q Consensus       116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  195 (385)
                      .+.. +|.   .+++|+.|++++|.++. ++.   .+++|++|++++|.+.. ++.     .+.+|+.|++++|.++...
T Consensus       112 ~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~-----~~~~L~~L~L~~N~l~~l~  177 (622)
T 3g06_A          112 PLTH-LPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA-----LPSELCKLWAYNNQLTSLP  177 (622)
T ss_dssp             CCCC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSCCC
T ss_pred             cCCC-CCC---CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCC-cCC-----ccCCCCEEECCCCCCCCCc
Confidence            7763 343   46778888888887764 333   24778888888877653 221     3456777777777766422


Q ss_pred             CcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCC
Q 043347          196 PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS  275 (385)
Q Consensus       196 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  275 (385)
                          ..+++|+.|++++|.++.. +.   .+++|+.|++++|.++..+.          .+++|+.|++++|.+.+. | 
T Consensus       178 ----~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~~----------~~~~L~~L~Ls~N~L~~l-p-  237 (622)
T 3g06_A          178 ----MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSLPA----------LPSGLKELIVSGNRLTSL-P-  237 (622)
T ss_dssp             ----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCC----------CCTTCCEEECCSSCCSCC-C-
T ss_pred             ----ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccccCC----------CCCCCCEEEccCCccCcC-C-
Confidence                3456777777777777643 22   23677777777777665432          135677777777766642 2 


Q ss_pred             cccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhh
Q 043347          276 SIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFC  351 (385)
Q Consensus       276 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  351 (385)
                         ...++++.|++++|++.. +|.   .+++|+.|++++|.+. .+|..+..+++|+.|++++|++++..+..+.
T Consensus       238 ---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          238 ---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             ---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             ---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence               122567777777776663 333   4566777777777776 5566666777777777777776655555444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=2.3e-28  Score=232.45  Aligned_cols=349  Identities=13%  Similarity=0.124  Sum_probs=183.9

Q ss_pred             cccceeceeEeecCccccCCChhhhcCCCc-ccEEEccCCc-ccC-cCCCCccCCCCCcEEecccccccccCC----CCc
Q 043347           29 NLSSISTGLDFSNNSLTGSFPDDMCEGLPR-LKGLYVSYNQ-FKG-PIPNNLWHCKELSRVSLSFNQFTGRIP----RDL  101 (385)
Q Consensus        29 ~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~-~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l  101 (385)
                      .+++++ +|+++++.+++..+..+...++. |++|++++|. +.. ........+++|++|++++|.+.+...    ...
T Consensus       110 ~~~~L~-~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          110 NLRQLK-SVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA  188 (592)
T ss_dssp             HCTTCC-EEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred             hCCCCC-eEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence            556666 67777776664433333322444 7777776664 111 111122356777777777776543321    223


Q ss_pred             cCcccccEEEeecccccC----CCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCccccc-CCCCcccC
Q 043347          102 GNSTKLKLLYLSFNNLIG----EIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGN-LPSSKKLI  176 (385)
Q Consensus       102 ~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~  176 (385)
                      ..+++|++|+++++.+..    .++..+.++++|+.|++++|.+.. .+..+..+++|+.++++....... .+....+.
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence            456677777777666542    222334456777777777766553 344555666666666653211100 00111133


Q ss_pred             CCCCCceEEccccccCCCCCcccccCCcccEEEccCcccccc-------------------------CcccccCCCCccE
Q 043347          177 GLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGL-------------------------IPKALGQLRNLER  231 (385)
Q Consensus       177 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------------------------~~~~~~~~~~L~~  231 (385)
                      .+++|+.+++..... ...+..+..+++|++|++++|.+.+.                         .......+++|+.
T Consensus       268 ~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~  346 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR  346 (592)
T ss_dssp             CCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred             ccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence            344444444443211 12233334444444444444443211                         1112234455666


Q ss_pred             EEecC-----------CcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeec----cccCC
Q 043347          232 LGLQS-----------NYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYK----CNIHG  296 (385)
Q Consensus       232 L~l~~-----------~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~----~~~~~  296 (385)
                      |++++           +.++...     .......+++|+.|+++.+.+++..+..+....+++++|++.+    +.+++
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~-----~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~  421 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRG-----LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD  421 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHH-----HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred             EEeecCccccccccccCccCHHH-----HHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence            66652           2222110     1122344667777777666666554444444336777777763    33332


Q ss_pred             C-----CCccccCCCCccEEECcCcc--ccCCCcccc-ccCCCCCeEeccCCcccCCC-hhhhhcCCCccEEEccCCccc
Q 043347          297 R-----IPKEIGNLINLTKLSLGYNN--LSGSLPITL-GRLKKLQGLDLQNNKFEGPI-PHEFCHFSRLYKFYLNRNKLS  367 (385)
Q Consensus       297 ~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~  367 (385)
                      .     ++..+..+++|++|++++|.  +++.....+ ..+++|+.|++++|.+++.. +..+..+++|+.|++++|+++
T Consensus       422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  501 (592)
T 3ogk_B          422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS  501 (592)
T ss_dssp             CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred             chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence            1     12224557788888886543  443333333 34788999999999887533 334466899999999999987


Q ss_pred             ccC-CCcccccccCccccC
Q 043347          368 GSI-PSCLGDLNSLRILSL  385 (385)
Q Consensus       368 ~~~-~~~~~~l~~L~~l~i  385 (385)
                      +.. +.....+++|+.|++
T Consensus       502 ~~~~~~~~~~l~~L~~L~l  520 (592)
T 3ogk_B          502 ERAIAAAVTKLPSLRYLWV  520 (592)
T ss_dssp             HHHHHHHHHHCSSCCEEEE
T ss_pred             HHHHHHHHHhcCccCeeEC
Confidence            553 333456778877753

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.4e-26  Score=202.42  Aligned_cols=244  Identities=23%  Similarity=0.214  Sum_probs=153.4

Q ss_pred             CcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCc
Q 043347          103 NSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLE  182 (385)
Q Consensus       103 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~  182 (385)
                      .+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+  +..+++|++|++++|.+.+.       ...++|+
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-------~~~~~L~  102 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-------LVGPSIE  102 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-------EECTTCC
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-------cCCCCcC
Confidence            34455555555555554444445555555555555555543222  44555555555555554421       1224556


Q ss_pred             eEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhh-hcccCceE
Q 043347          183 GLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSAL-VNCKSLKV  261 (385)
Q Consensus       183 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~  261 (385)
                      +|++++|.+.....   ..+++|++|++++|.+....+..+..+++|+.|++++|.+.....      ..+ ..+++|+.
T Consensus       103 ~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~~l~~L~~  173 (317)
T 3o53_A          103 TLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF------AELAASSDTLEH  173 (317)
T ss_dssp             EEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG------GGGGGGTTTCCE
T ss_pred             EEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH------HHHhhccCcCCE
Confidence            66666555543222   224567777777777665555566667777777777777665432      222 35677777


Q ss_pred             EEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCc
Q 043347          262 IVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNK  341 (385)
Q Consensus       262 L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  341 (385)
                      |++++|.+.+.... . . .+++++|++++|++.+. +..+..+++|++|++++|.+. .+|..+..+++|+.|++++|+
T Consensus       174 L~L~~N~l~~~~~~-~-~-l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          174 LNLQYNFIYDVKGQ-V-V-FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             EECTTSCCCEEECC-C-C-CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCC
T ss_pred             EECCCCcCcccccc-c-c-cccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCC
Confidence            77777777654221 1 2 26788888888888754 344778889999999999888 567778888899999999998


Q ss_pred             cc-CCChhhhhcCCCccEEEccCC-ccccc
Q 043347          342 FE-GPIPHEFCHFSRLYKFYLNRN-KLSGS  369 (385)
Q Consensus       342 ~~-~~~~~~~~~~~~L~~L~l~~~-~~~~~  369 (385)
                      +. +..+..+..+++|+.++++++ .+.+.
T Consensus       249 ~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             CBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred             ccCcCHHHHHhccccceEEECCCchhccCC
Confidence            87 667777778888888888855 34433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=2e-26  Score=201.40  Aligned_cols=256  Identities=19%  Similarity=0.155  Sum_probs=205.9

Q ss_pred             ccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEc
Q 043347          107 LKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLIL  186 (385)
Q Consensus       107 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l  186 (385)
                      ++..++..+.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+    +..+++|++|++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~L   87 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDL   87 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEEC
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEEC
Confidence            3444455554443334445678899999999999998777889999999999999999875433    778999999999


Q ss_pred             cccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccC
Q 043347          187 GLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAE  266 (385)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  266 (385)
                      ++|.+.+     +...++|++|++++|.+....+.   .+++|+.|++++|.++...+      ..+..+++|+.|++++
T Consensus        88 s~n~l~~-----l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~------~~~~~l~~L~~L~Ls~  153 (317)
T 3o53_A           88 NNNYVQE-----LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD------LDEGCRSRVQYLDLKL  153 (317)
T ss_dssp             CSSEEEE-----EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG------BCTGGGSSEEEEECTT
T ss_pred             cCCcccc-----ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc------hhhhccCCCCEEECCC
Confidence            9998763     23458999999999998765443   46889999999999887533      3577889999999999


Q ss_pred             CCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCC
Q 043347          267 NPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPI  346 (385)
Q Consensus       267 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  346 (385)
                      |.+.+..+..+....+++++|++++|.+.+. + ....+++|++|++++|.+.+ ++..+..+++|+.|++++|+++ .+
T Consensus       154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l  229 (317)
T 3o53_A          154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LI  229 (317)
T ss_dssp             SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EE
T ss_pred             CCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-ch
Confidence            9998877666643338999999999999754 2 23458999999999999984 5556889999999999999998 56


Q ss_pred             hhhhhcCCCccEEEccCCccc-ccCCCcccccccCcccc
Q 043347          347 PHEFCHFSRLYKFYLNRNKLS-GSIPSCLGDLNSLRILS  384 (385)
Q Consensus       347 ~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~l~  384 (385)
                      |..+..+++|+.|++++|+++ +..+..+..+++|+.++
T Consensus       230 ~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~  268 (317)
T 3o53_A          230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA  268 (317)
T ss_dssp             CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred             hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence            777888999999999999998 56677777777777653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=2.7e-23  Score=195.57  Aligned_cols=265  Identities=29%  Similarity=0.351  Sum_probs=166.1

Q ss_pred             cccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEe
Q 043347            8 ELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVS   87 (385)
Q Consensus         8 ~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~   87 (385)
                      +++.|+++++.++ .+|..+.  ++++ +|++++|.++ .+|.    .+++|++|++++|.++. ++.   .+++|++|+
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~-~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~  107 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHIT-TLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELS  107 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCS-EEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCc-EEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence            4677777777776 6666554  4555 6777777777 6665    35677777777777663 332   557777777


Q ss_pred             cccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccc
Q 043347           88 LSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSG  167 (385)
Q Consensus        88 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  167 (385)
                      +++|.+. .+|.   .+++|++|++++|.+. .+|..   +++|++|++++|.++.. +.   .+++|+.|++++|.+..
T Consensus       108 Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          108 IFSNPLT-HLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             ECSCCCC-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC
T ss_pred             CcCCcCC-CCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC
Confidence            7777666 3333   4567777777777665 34432   36777777777766532 22   34567777777776653


Q ss_pred             cCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhh
Q 043347          168 NLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELM  247 (385)
Q Consensus       168 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  247 (385)
                       +|     ..+++|+.|++++|.+... +.   ..++|+.|++++|.+... +.   .+++|+.|++++|.++..+    
T Consensus       176 -l~-----~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~lp----  237 (622)
T 3g06_A          176 -LP-----MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTSLP----  237 (622)
T ss_dssp             -CC-----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSCCC----
T ss_pred             -Cc-----ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCccccc-CC---CCCCCCEEEccCCccCcCC----
Confidence             22     2456777777777766632 21   235677777777766643 21   2366777777777666532    


Q ss_pred             hhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccc
Q 043347          248 SLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLG  327 (385)
Q Consensus       248 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  327 (385)
                            ..+++|+.|++++|.+... |.    ..++++.|++++|++. .+|..+..+++|+.|++++|.+.+..+..+.
T Consensus       238 ------~~l~~L~~L~Ls~N~L~~l-p~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          238 ------VLPSELKELMVSGNRLTSL-PM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             ------CCCTTCCEEECCSSCCSCC-CC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             ------CCCCcCcEEECCCCCCCcC-Cc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence                  2346677777777776632 22    2256777777777776 4566677777777777777777665555444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=5.4e-26  Score=198.19  Aligned_cols=252  Identities=19%  Similarity=0.177  Sum_probs=140.5

Q ss_pred             cCCCCCcEEecccccccccCCCCccCcccccEEEeecccccC-CCCcccC-------CCcCCcEEEecccccccccCccc
Q 043347           78 WHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIG-EIPQEIG-------SLRNLEILRIDQNNLVGFIPDTI  149 (385)
Q Consensus        78 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~  149 (385)
                      ...++|+.+++++|.+  .+|..+...  |++|+++++.+.. ..+..+.       .+++|++|++++|.+....+..+
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            3445677777777766  455544332  6667777666632 3344333       56677777777776665555544


Q ss_pred             --cCCCCCcEEEccCCcccccCCCCcccCCC-----CCCceEEccccccCCCCCcccccCCcccEEEccCcccccc--Cc
Q 043347          150 --FNMSTLKTLSLLNNTLSGNLPSSKKLIGL-----PNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGL--IP  220 (385)
Q Consensus       150 --~~l~~L~~l~l~~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~  220 (385)
                        ..+++|++|++++|.+.+. |..  +..+     ++|++|++++|.+....+..+..+++|++|++++|++.+.  .+
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~--~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  192 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAW--LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI  192 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSH--HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHH--HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence              5666666666666666543 211  2222     5555555555555544445555555555555555553321  11


Q ss_pred             ccc--cCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCC
Q 043347          221 KAL--GQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRI  298 (385)
Q Consensus       221 ~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~  298 (385)
                      ..+  ..+++|+.|++++|.++..+..   ....+..+++|+.|++++|.+.+..+.                       
T Consensus       193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----------------------  246 (312)
T 1wwl_A          193 SALCPLKFPTLQVLALRNAGMETPSGV---CSALAAARVQLQGLDLSHNSLRDAAGA-----------------------  246 (312)
T ss_dssp             HHSCTTSCTTCCEEECTTSCCCCHHHH---HHHHHHTTCCCSEEECTTSCCCSSCCC-----------------------
T ss_pred             HHHHhccCCCCCEEECCCCcCcchHHH---HHHHHhcCCCCCEEECCCCcCCcccch-----------------------
Confidence            111  4455555555555555432110   011223444555555555544433211                       


Q ss_pred             CccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccc
Q 043347          299 PKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSG  368 (385)
Q Consensus       299 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  368 (385)
                       ..+..+++|++|++++|.++ .+|..+.  ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus       247 -~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          247 -PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -SCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             -hhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence             23344667777888877777 5555554  7788888888877754 44 6677888888888887764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1.8e-27  Score=226.47  Aligned_cols=371  Identities=15%  Similarity=0.121  Sum_probs=182.3

Q ss_pred             CCcCcccEEEecCccccCC---CCc------------ccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCC-
Q 043347            4 GNLAELEVLVLNNNLLTGT---IPA------------SIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYN-   67 (385)
Q Consensus         4 ~~~~~l~~L~l~~~~~~~~---~~~------------~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-   67 (385)
                      .++++|++|+++++.....   .|.            -...+++++ +|+++++.+++..+..+...+++|++|++++| 
T Consensus        63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~-~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE-EIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC-EEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCC-eEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence            3567778888877642211   111            123556666 68888777765545555445778888888777 


Q ss_pred             cccCc-CCCCccCCCCCcEEecccccccccCCCCc----cCcccccEEEeeccc--ccC-CCCcccCCCcCCcEEEeccc
Q 043347           68 QFKGP-IPNNLWHCKELSRVSLSFNQFTGRIPRDL----GNSTKLKLLYLSFNN--LIG-EIPQEIGSLRNLEILRIDQN  139 (385)
Q Consensus        68 ~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~~--~~~-~~~~~~~~l~~L~~L~l~~~  139 (385)
                      .+... .+..+..+++|++|++++|.+.+..+..+    ..+++|++|+++++.  +.. .+...+..+++|+.|++++|
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            33321 22233467778888887777654333222    356677777777765  110 01111234577777777776


Q ss_pred             ccccccCccccCCCCCcEEEccCCcc--------------------------c----ccCCCCcccCCCCCCceEEcccc
Q 043347          140 NLVGFIPDTIFNMSTLKTLSLLNNTL--------------------------S----GNLPSSKKLIGLPNLEGLILGLN  189 (385)
Q Consensus       140 ~~~~~~~~~~~~l~~L~~l~l~~~~~--------------------------~----~~~~~~~~~~~~~~L~~L~l~~~  189 (385)
                      ......+..+..+++|+.++++.+..                          .    ..++.  .+..+++|++|++++|
T Consensus       222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~--~~~~~~~L~~L~L~~~  299 (594)
T 2p1m_B          222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA--VYSVCSRLTTLNLSYA  299 (594)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG--GHHHHTTCCEEECTTC
T ss_pred             CcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH--HHHhhCCCCEEEccCC
Confidence            32222444445556666665443310                          0    00000  0113456666666666


Q ss_pred             ccCCC-CCcccccCCcccEEEccCcccccc-CcccccCCCCccEEEecC---------CcccccchhhhhhhHhhhcccC
Q 043347          190 NFSGS-IPSFFFNASKLYYLELAYNSFSGL-IPKALGQLRNLERLGLQS---------NYLTSSTSELMSLFSALVNCKS  258 (385)
Q Consensus       190 ~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~---------~~~~~~~~~~~~~~~~~~~~~~  258 (385)
                      .+.+. ....+..+++|++|++++| +.+. .......+++|+.|++.+         +.+++.   .  .......+++
T Consensus       300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~---~--l~~l~~~~~~  373 (594)
T 2p1m_B          300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ---G--LVSVSMGCPK  373 (594)
T ss_dssp             CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH---H--HHHHHHHCTT
T ss_pred             CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH---H--HHHHHHhchh
Confidence            54321 1122345566666666655 2211 111222356666666633         122211   0  1111223566


Q ss_pred             ceEEEccCCCCCCCCCCcccccccceeEEEee-----ccccCCCCC------ccccCCCCccEEECcCccccCCCccccc
Q 043347          259 LKVIVLAENPVDGVLPSSIGNLSVSVEEIYMY-----KCNIHGRIP------KEIGNLINLTKLSLGYNNLSGSLPITLG  327 (385)
Q Consensus       259 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~-----~~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~  327 (385)
                      |+.|.+..+.+++.....+....++++.|++.     +|...+..+      ..+..+++|+.|++++ .+++.....+.
T Consensus       374 L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~  452 (594)
T 2p1m_B          374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG  452 (594)
T ss_dssp             CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH
T ss_pred             HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH
Confidence            66665555555544333333222566666666     222211111      1134455666666655 33332222333


Q ss_pred             c-CCCCCeEeccCCcccCCChhhh-hcCCCccEEEccCCcccccCCC-cccccccCcccc
Q 043347          328 R-LKKLQGLDLQNNKFEGPIPHEF-CHFSRLYKFYLNRNKLSGSIPS-CLGDLNSLRILS  384 (385)
Q Consensus       328 ~-~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~l~  384 (385)
                      . +++|+.|++++|.+++.....+ ..+++|++|++++|++++..+. ....+++|+.|+
T Consensus       453 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  512 (594)
T 2p1m_B          453 TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW  512 (594)
T ss_dssp             HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred             HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence            2 5566666666666554434333 3466666666666666443322 223355555543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=2.9e-25  Score=193.50  Aligned_cols=249  Identities=18%  Similarity=0.133  Sum_probs=181.9

Q ss_pred             hcCCCcccEEEccCCcccCcCCCCccCCCCCcEEeccccccc-ccCCCCcc-------CcccccEEEeecccccCCCCcc
Q 043347           53 CEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFT-GRIPRDLG-------NSTKLKLLYLSFNNLIGEIPQE  124 (385)
Q Consensus        53 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~  124 (385)
                      +...++|+++++++|.+  ..+..+...  |+.|+++++.+. ...+..+.       ++++|++|++++|.+.+..|..
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            33567789999999988  445445444  899999999884 33444444       6899999999999999888887


Q ss_pred             c--CCCcCCcEEEecccccccccCccccCC-----CCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCC--C
Q 043347          125 I--GSLRNLEILRIDQNNLVGFIPDTIFNM-----STLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGS--I  195 (385)
Q Consensus       125 ~--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~  195 (385)
                      +  ..+++|++|++++|.+... +..+..+     ++|++|++++|.+.+..+..  +..+++|++|++++|.+.+.  .
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~  191 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ--VRVFPALSTLDLSDNPELGERGL  191 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT--CCCCSSCCEEECCSCTTCHHHHH
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHH--hccCCCCCEEECCCCCcCcchHH
Confidence            6  8999999999999999876 6767666     99999999999987654433  77899999999999986532  1


Q ss_pred             Cc--ccccCCcccEEEccCcccccc---CcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCC
Q 043347          196 PS--FFFNASKLYYLELAYNSFSGL---IPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVD  270 (385)
Q Consensus       196 ~~--~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  270 (385)
                      +.  .+..+++|++|++++|.+...   ....+..+++|+.|++++|.+....+     ...+..+++|+.|++++|.+.
T Consensus       192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-----APSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-----CSCCCCCTTCCEEECTTSCCS
T ss_pred             HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-----hhhhhhcCCCCEEECCCCccC
Confidence            12  237889999999999998732   22344677999999999999887531     123455678888888888776


Q ss_pred             CCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCcccc
Q 043347          271 GVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLS  319 (385)
Q Consensus       271 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  319 (385)
                       ..|..+.   +++++|++++|++.+. |. +..+++|++|++++|.++
T Consensus       267 -~ip~~~~---~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          267 -QVPKGLP---AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             -SCCSSCC---SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             -hhhhhcc---CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence             4444332   4566666666666543 33 555556666666655554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=2e-24  Score=199.30  Aligned_cols=238  Identities=24%  Similarity=0.210  Sum_probs=186.4

Q ss_pred             cCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCC
Q 043347          102 GNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL  181 (385)
Q Consensus       102 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L  181 (385)
                      ..+++|++|++++|.+.+..|..|..+++|+.|++++|.+....+  +..+++|++|++++|.+.+..       ..++|
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-------~~~~L  101 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-------VGPSI  101 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-------ECTTC
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-------CCCCc
Confidence            345689999999999987777889999999999999999875544  888999999999999886431       23789


Q ss_pred             ceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhh-cccCce
Q 043347          182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALV-NCKSLK  260 (385)
Q Consensus       182 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~L~  260 (385)
                      +.|++++|.+.+..+.   .+++|+.|++++|.+....+..+..+++|+.|++++|.++...+      ..+. .+++|+
T Consensus       102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~l~~~l~~L~  172 (487)
T 3oja_A          102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF------AELAASSDTLE  172 (487)
T ss_dssp             CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG------GGGGGGTTTCC
T ss_pred             CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh------HHHhhhCCccc
Confidence            9999999988754332   35789999999999887777778888999999999998876532      3343 678999


Q ss_pred             EEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCC
Q 043347          261 VIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNN  340 (385)
Q Consensus       261 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  340 (385)
                      .|++++|.+.+..+..  . .++++.|++++|.+.+..+ .+..+++|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus       173 ~L~Ls~N~l~~~~~~~--~-l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          173 HLNLQYNFIYDVKGQV--V-FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             EEECTTSCCCEEECCC--C-CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred             EEecCCCccccccccc--c-CCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCC
Confidence            9999999887653322  2 3788888888888875444 4778888888888888888 46667778888888888888


Q ss_pred             ccc-CCChhhhhcCCCccEEEcc
Q 043347          341 KFE-GPIPHEFCHFSRLYKFYLN  362 (385)
Q Consensus       341 ~~~-~~~~~~~~~~~~L~~L~l~  362 (385)
                      .+. +..+..+..++.|+.++++
T Consensus       248 ~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          248 GFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCcCcchHHHHHhCCCCcEEecc
Confidence            877 4556666777777777775

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=2.9e-24  Score=198.19  Aligned_cols=238  Identities=24%  Similarity=0.209  Sum_probs=187.1

Q ss_pred             cCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcE
Q 043347           78 WHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKT  157 (385)
Q Consensus        78 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  157 (385)
                      ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.++..     ...++|+.
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~  103 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIET  103 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCE
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCE
Confidence            445689999999998887666788889999999999988875443  88889999999999887643     23488999


Q ss_pred             EEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCccccc-CCCCccEEEecC
Q 043347          158 LSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALG-QLRNLERLGLQS  236 (385)
Q Consensus       158 l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~  236 (385)
                      |++++|.+.+..+     ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++
T Consensus       104 L~L~~N~l~~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          104 LHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             EECCSSCCCCEEE-----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             EECcCCcCCCCCc-----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence            9999988865432     2467899999999988877777788889999999999988876666664 688999999999


Q ss_pred             CcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCc
Q 043347          237 NYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYN  316 (385)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  316 (385)
                      |.++..+        ....+++|+.|++++|.+.+..+. +..+ ++++.|++++|.+.+ +|..+..+++|+.|++++|
T Consensus       179 N~l~~~~--------~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l-~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          179 NFIYDVK--------GQVVFAKLKTLDLSSNKLAFMGPE-FQSA-AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             SCCCEEE--------CCCCCTTCCEEECCSSCCCEECGG-GGGG-TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTC
T ss_pred             Ccccccc--------ccccCCCCCEEECCCCCCCCCCHh-HcCC-CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCC
Confidence            9887653        234578899999999988865444 5555 789999999998884 5666788889999999999


Q ss_pred             ccc-CCCccccccCCCCCeEecc
Q 043347          317 NLS-GSLPITLGRLKKLQGLDLQ  338 (385)
Q Consensus       317 ~~~-~~~~~~~~~~~~L~~L~l~  338 (385)
                      .+. +..+..+..++.|+.+++.
T Consensus       248 ~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          248 GFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCcCcchHHHHHhCCCCcEEecc
Confidence            887 4566667777777777775

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=1.3e-26  Score=220.54  Aligned_cols=365  Identities=17%  Similarity=0.153  Sum_probs=238.7

Q ss_pred             cEEEecCccccCCCCcccccccceeceeEeecCccccCC---C-----------hhhhcCCCcccEEEccCCcccCcCCC
Q 043347           10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSF---P-----------DDMCEGLPRLKGLYVSYNQFKGPIPN   75 (385)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~---~-----------~~~~~~~~~L~~L~l~~~~~~~~~~~   75 (385)
                      +.+++.++... .....+..++.++ .|+++++.....+   |           ..+...+++|++|+++++.+.+....
T Consensus        46 ~~l~~~~~~~~-~~~~~~~~~~~L~-~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~  123 (594)
T 2p1m_B           46 RKVFIGNCYAV-SPATVIRRFPKVR-SVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE  123 (594)
T ss_dssp             CEEEESSTTSS-CHHHHHHHCTTCC-EEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred             eEEeecccccc-CHHHHHhhCCCce-EEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH
Confidence            35666554332 2223466778888 7999987422111   1           22344689999999999987755444


Q ss_pred             Ccc-CCCCCcEEecccc-ccccc-CCCCccCcccccEEEeecccccCCCCccc----CCCcCCcEEEecccc--cccc-c
Q 043347           76 NLW-HCKELSRVSLSFN-QFTGR-IPRDLGNSTKLKLLYLSFNNLIGEIPQEI----GSLRNLEILRIDQNN--LVGF-I  145 (385)
Q Consensus        76 ~~~-~~~~L~~L~l~~~-~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~--~~~~-~  145 (385)
                      .+. .+++|++|++++| .+... .+..+.++++|++|++++|.+.+..+..+    ..+++|+.|+++++.  +... .
T Consensus       124 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (594)
T 2p1m_B          124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSAL  203 (594)
T ss_dssp             HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHH
T ss_pred             HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHH
Confidence            554 6899999999998 44322 33344579999999999998776544443    367899999999886  2211 1


Q ss_pred             CccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccc--------------------------cC----CCC
Q 043347          146 PDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNN--------------------------FS----GSI  195 (385)
Q Consensus       146 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--------------------------~~----~~~  195 (385)
                      ...+..+++|+.|++++|.....++.  .+..+++|++|+++.+.                          +.    ...
T Consensus       204 ~~l~~~~~~L~~L~L~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l  281 (594)
T 2p1m_B          204 ERLVTRCPNLKSLKLNRAVPLEKLAT--LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYL  281 (594)
T ss_dssp             HHHHHHCTTCCEEECCTTSCHHHHHH--HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGG
T ss_pred             HHHHHhCCCCcEEecCCCCcHHHHHH--HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhH
Confidence            22234679999999998833222221  13456667777654331                          11    112


Q ss_pred             CcccccCCcccEEEccCccccccC-cccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccC--------
Q 043347          196 PSFFFNASKLYYLELAYNSFSGLI-PKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAE--------  266 (385)
Q Consensus       196 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~--------  266 (385)
                      +..+..+++|++|++++|.+.+.. ...+..+++|+.|++++| +...  +   +......+++|+.|++.+        
T Consensus       282 ~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~--~---l~~l~~~~~~L~~L~L~~~~~~g~~~  355 (594)
T 2p1m_B          282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA--G---LEVLASTCKDLRELRVFPSEPFVMEP  355 (594)
T ss_dssp             GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH--H---HHHHHHHCTTCCEEEEECSCTTCSSC
T ss_pred             HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH--H---HHHHHHhCCCCCEEEEecCccccccc
Confidence            223346789999999998865432 233567899999999987 3321  1   222344589999999954        


Q ss_pred             -CCCCCCCCCcccccccceeEEEeeccccCCCCCcccc-CCCCccEEECc--C----ccccCC-----CccccccCCCCC
Q 043347          267 -NPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIG-NLINLTKLSLG--Y----NNLSGS-----LPITLGRLKKLQ  333 (385)
Q Consensus       267 -~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~~-----~~~~~~~~~~L~  333 (385)
                       +.+++.....+....+++++|.+.++.+.......+. .+++|++|+++  +    +.+++.     ++..+..+++|+
T Consensus       356 ~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~  435 (594)
T 2p1m_B          356 NVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR  435 (594)
T ss_dssp             SSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCC
T ss_pred             CCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCcc
Confidence             2333332222333237899998888877655444454 58999999999  3    344421     122356789999


Q ss_pred             eEeccCCcccCCChhhhhc-CCCccEEEccCCcccccCCCcc-cccccCccccC
Q 043347          334 GLDLQNNKFEGPIPHEFCH-FSRLYKFYLNRNKLSGSIPSCL-GDLNSLRILSL  385 (385)
Q Consensus       334 ~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~l~i  385 (385)
                      .|++++ .+++.....+.. +++|+.|++++|.+++..+..+ .++++|+.|++
T Consensus       436 ~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L  488 (594)
T 2p1m_B          436 RLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEI  488 (594)
T ss_dssp             EEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEE
T ss_pred             EEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEEC
Confidence            999987 666555566665 8999999999999987665555 56888888753

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=5.5e-22  Score=169.15  Aligned_cols=200  Identities=24%  Similarity=0.227  Sum_probs=137.5

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN  115 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  115 (385)
                      .++++++.++ .+|..+.   +++++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus        20 ~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           20 SVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             EEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             EEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            5777777777 6666442   56777777777777665667777777777777777776444445567777777777777


Q ss_pred             cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC
Q 043347          116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI  195 (385)
Q Consensus       116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  195 (385)
                      .+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.+....+.  .+..+++|++|++++|.+....
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG--VFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCC
T ss_pred             cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh--HccCCcccceeEecCCcCcEeC
Confidence            77655555667777777777777777766666667777777777777766533221  2556677777777777766555


Q ss_pred             CcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccc
Q 043347          196 PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS  241 (385)
Q Consensus       196 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  241 (385)
                      +..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            5566667777777777777766555566677777777777776554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=1.8e-22  Score=172.89  Aligned_cols=205  Identities=24%  Similarity=0.231  Sum_probs=94.4

Q ss_pred             cccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEec
Q 043347           58 RLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRID  137 (385)
Q Consensus        58 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  137 (385)
                      +|++|++++|.+.+..+..|..+++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|+.|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45555555555544444444555555555555555443333344455555555555555444444444455555555555


Q ss_pred             ccccccccCccccCCCCCcEEEccCCccccc-CCCCcccCCCCCCceEEccccccCCCCCcccccCCccc----EEEccC
Q 043347          138 QNNLVGFIPDTIFNMSTLKTLSLLNNTLSGN-LPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLY----YLELAY  212 (385)
Q Consensus       138 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~  212 (385)
                      +|.+....+..+..+++|++|++++|.+... +|.  .+..+++|++|++++|.+.+.....+..+++++    ++++++
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE--YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG--GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCch--hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence            5544433333344445555555554444321 111  133444444444444444433333333333333    455555


Q ss_pred             ccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCC
Q 043347          213 NSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDG  271 (385)
Q Consensus       213 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  271 (385)
                      |.+....+..+. ..+|+.|++++|.++..+.      ..+..+++|+.|++++|++.+
T Consensus       187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPD------GIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             SCCCEECTTSSC-SCCEEEEECCSSCCSCCCT------TTTTTCCSCCEEECCSSCBCC
T ss_pred             CcccccCccccC-CCcccEEECCCCceeecCH------hHhcccccccEEEccCCcccc
Confidence            555433333222 2345555555555544322      223445555555555555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=1.8e-22  Score=172.92  Aligned_cols=225  Identities=22%  Similarity=0.219  Sum_probs=180.6

Q ss_pred             EEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEeccc
Q 043347           11 VLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSF   90 (385)
Q Consensus        11 ~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~   90 (385)
                      ..+..+..+. .+|..+.  ++++ +|+++++.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~-~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~   85 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP--FSTK-NLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG   85 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCC-EEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             eEEecCCCcc-ccCCCCC--CCcc-EEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC
Confidence            3455555555 5666543  3466 7999999998 66766667899999999999999877777899999999999999


Q ss_pred             ccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccc-cCccccCCCCCcEEEccCCcccccC
Q 043347           91 NQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGF-IPDTIFNMSTLKTLSLLNNTLSGNL  169 (385)
Q Consensus        91 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~  169 (385)
                      |.+....+..+.++++|++|++.+|.+....+..+..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence            999877778899999999999999998866666788999999999999998764 4788899999999999999887543


Q ss_pred             CCCcccCCCCCCc----eEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccc
Q 043347          170 PSSKKLIGLPNLE----GLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSST  243 (385)
Q Consensus       170 ~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  243 (385)
                      +..  +..++.|+    ++++++|.+.......+. ..+|++|++++|.++...+..+..+++|+.|++++|.+...-
T Consensus       166 ~~~--~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          166 CTD--LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             GGG--GHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             HHH--hhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            221  33444444    899999988755444444 348999999999998777777889999999999999887643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=8.3e-22  Score=168.06  Aligned_cols=203  Identities=24%  Similarity=0.264  Sum_probs=176.6

Q ss_pred             cccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEe
Q 043347            8 ELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVS   87 (385)
Q Consensus         8 ~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~   87 (385)
                      +.++++++++.++ .+|..+.  +.++ .|+++++.++ .++...+..+++|++|++++|.+.......|..+++|++|+
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~-~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTK-KLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCS-EEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCC-EEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence            5789999999998 6777654  4566 7999999999 88887778999999999999999877777789999999999


Q ss_pred             cccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccc
Q 043347           88 LSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSG  167 (385)
Q Consensus        88 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  167 (385)
                      +++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+..
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence            99999986666678899999999999999987777788999999999999999987777778899999999999999875


Q ss_pred             cCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccc
Q 043347          168 NLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSG  217 (385)
Q Consensus       168 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  217 (385)
                      ..+.  .+..+++|++|++++|.+.......+..+++|+.|++++|.+..
T Consensus       172 ~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          172 VPEG--AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CCTT--TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             eChh--HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            4332  27788999999999999987777778889999999999998753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=3.2e-22  Score=170.78  Aligned_cols=187  Identities=25%  Similarity=0.279  Sum_probs=114.3

Q ss_pred             CCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcc
Q 043347          177 GLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNC  256 (385)
Q Consensus       177 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  256 (385)
                      .+++|++|++++|.+.+.  ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+...+.      ..+..+
T Consensus        61 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l  132 (272)
T 3rfs_A           61 YLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD------GVFDKL  132 (272)
T ss_dssp             GCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT------TTTTTC
T ss_pred             cCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH------HHhccC
Confidence            344444444444444321  234445555555555555554444445555555555555555554322      234555


Q ss_pred             cCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEe
Q 043347          257 KSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLD  336 (385)
Q Consensus       257 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  336 (385)
                      ++|+.|++++|.+.+..+..+... +++++|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus       133 ~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  211 (272)
T 3rfs_A          133 TNLTYLNLAHNQLQSLPKGVFDKL-TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW  211 (272)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccCccCHHHhccC-ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEE
Confidence            566666666665554444444444 5666777777766655555667778888888888888766666677788888888


Q ss_pred             ccCCcccCCChhhhhcCCCccEEEccCCcccccCCCccccccc
Q 043347          337 LQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNS  379 (385)
Q Consensus       337 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  379 (385)
                      +++|.+.       +.+++|+.+++++|.+++.+|..+..+..
T Consensus       212 l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          212 LHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             ccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            8888776       23567777888888888777777665543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=4.3e-21  Score=164.96  Aligned_cols=203  Identities=24%  Similarity=0.195  Sum_probs=103.3

Q ss_pred             CCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCC
Q 043347            4 GNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKEL   83 (385)
Q Consensus         4 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L   83 (385)
                      .+++++++++++++.++ .+|..+.  +.++ .|++++|.++ .++...+..+++|++|++++|.+.+...  ...+++|
T Consensus         7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~-~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L   79 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTT-ILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL   79 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCC-EEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred             cccCCccEEECCCCCCC-cCCCCCC--CCCC-EEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence            34555555555555555 4444332  2333 4555555555 3433344455555555555555543222  1344555


Q ss_pred             cEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCC
Q 043347           84 SRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNN  163 (385)
Q Consensus        84 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~  163 (385)
                      ++|++++|.+. .+|..+..+++|++|++++|.+....+..|..+++|+.|++++|.+....+..               
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~---------------  143 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL---------------  143 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT---------------
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh---------------
Confidence            55555555544 34444444555555555555544333344444445555555444444333333               


Q ss_pred             cccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccc
Q 043347          164 TLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS  241 (385)
Q Consensus       164 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  241 (385)
                                 +..+++|+.|++++|.+.......+..+++|+.|++++|.+.. .+..+...++|+.+++++|.+..
T Consensus       144 -----------~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          144 -----------LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             -----------TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCC
T ss_pred             -----------cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccC
Confidence                       3344555555555555554444445556666666666666653 33444455667777777776544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=2.9e-21  Score=164.84  Aligned_cols=214  Identities=21%  Similarity=0.178  Sum_probs=142.9

Q ss_pred             EEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEeccc
Q 043347           11 VLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSF   90 (385)
Q Consensus        11 ~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~   90 (385)
                      .+++.++.+.+.  .....+.+++ .|+++++.++ .++.  +..+++|++|++++|.+.+.  ..+..+++|++|++++
T Consensus        23 ~l~l~~~~~~~~--~~~~~l~~L~-~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~   94 (272)
T 3rfs_A           23 KANLKKKSVTDA--VTQNELNSID-QIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG   94 (272)
T ss_dssp             HHHHTCSCTTSE--ECHHHHTTCC-EEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred             HHHhcCcccccc--ccccccccee-eeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence            334444444322  2344566666 6777777776 4443  33577777777777776642  3567777777777777


Q ss_pred             ccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCC
Q 043347           91 NQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLP  170 (385)
Q Consensus        91 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  170 (385)
                      |.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  174 (272)
T 3rfs_A           95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE  174 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence            77775555556777777777777777775555557777777777777777776555556777777777777777664322


Q ss_pred             CCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccc
Q 043347          171 SSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS  241 (385)
Q Consensus       171 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  241 (385)
                      .  .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.       +.+++++.+++..|.+.+
T Consensus       175 ~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          175 G--VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG  236 (272)
T ss_dssp             T--TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGG
T ss_pred             H--HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCC
Confidence            2  2556777888888877777666666777788888888777654       335567777777666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=1.1e-20  Score=162.48  Aligned_cols=203  Identities=26%  Similarity=0.229  Sum_probs=129.4

Q ss_pred             ccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccc
Q 043347           28 FNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKL  107 (385)
Q Consensus        28 ~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  107 (385)
                      .++++++ .++++++.++ .+|..+.   ++++.|++++|.+.+..+..|..+++|++|++++|.+....+  ...+++|
T Consensus         7 ~~l~~l~-~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L   79 (290)
T 1p9a_G            7 SKVASHL-EVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL   79 (290)
T ss_dssp             ECSTTCC-EEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred             cccCCcc-EEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence            3444555 4666666555 5554442   455556666555554444455555555555555555542211  1344555


Q ss_pred             cEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEcc
Q 043347          108 KLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILG  187 (385)
Q Consensus       108 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  187 (385)
                      ++|++++|.+. .+|.                        .+..+++|+.|++++|.+....+.  .+..+++|++|+++
T Consensus        80 ~~L~Ls~N~l~-~l~~------------------------~~~~l~~L~~L~l~~N~l~~l~~~--~~~~l~~L~~L~L~  132 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPL------------------------LGQTLPALTVLDVSFNRLTSLPLG--ALRGLGELQELYLK  132 (290)
T ss_dssp             CEEECCSSCCS-SCCC------------------------CTTTCTTCCEEECCSSCCCCCCSS--TTTTCTTCCEEECT
T ss_pred             CEEECCCCcCC-cCch------------------------hhccCCCCCEEECCCCcCcccCHH--HHcCCCCCCEEECC
Confidence            55555555444 3333                        344455555555555555432222  25566777777777


Q ss_pred             ccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCC
Q 043347          188 LNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAEN  267 (385)
Q Consensus       188 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  267 (385)
                      +|.+....+..+..+++|+.|++++|++....+..+..+++|+.|++++|.+...+.       .+...+.|+.+++++|
T Consensus       133 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~-------~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK-------GFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCCCSEEECCSC
T ss_pred             CCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccCh-------hhcccccCCeEEeCCC
Confidence            777766666777889999999999999997777778899999999999999987644       4555679999999999


Q ss_pred             CCCC
Q 043347          268 PVDG  271 (385)
Q Consensus       268 ~~~~  271 (385)
                      ++..
T Consensus       206 p~~C  209 (290)
T 1p9a_G          206 PWLC  209 (290)
T ss_dssp             CBCC
T ss_pred             CccC
Confidence            8864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=4.1e-21  Score=160.75  Aligned_cols=193  Identities=20%  Similarity=0.265  Sum_probs=92.7

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCc-ccCcCCCCccCCCCCcEEeccc-ccccccCCCCccCcccccEEEee
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQ-FKGPIPNNLWHCKELSRVSLSF-NQFTGRIPRDLGNSTKLKLLYLS  113 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~  113 (385)
                      +|+++++.++ .++...+..+++|++|++++|. +....+..|..+++|++|++++ |.+....+..+.++++|++|+++
T Consensus        35 ~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~  113 (239)
T 2xwt_C           35 TLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF  113 (239)
T ss_dssp             EEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEE
T ss_pred             EEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCC
Confidence            4555555554 4444444445555555555553 4433333444555555555554 44443333344445555555555


Q ss_pred             cccccCCCCcccCCCcCCc---EEEeccc-ccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCc-eEEccc
Q 043347          114 FNNLIGEIPQEIGSLRNLE---ILRIDQN-NLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLE-GLILGL  188 (385)
Q Consensus       114 ~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~  188 (385)
                      +|.+.+ +|. +..+++|+   .|++++| .+....+..+.                          .+++|+ ++++++
T Consensus       114 ~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~--------------------------~l~~L~~~L~l~~  165 (239)
T 2xwt_C          114 NTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQ--------------------------GLCNETLTLKLYN  165 (239)
T ss_dssp             EECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTT--------------------------TTBSSEEEEECCS
T ss_pred             CCCCcc-ccc-cccccccccccEEECCCCcchhhcCccccc--------------------------chhcceeEEEcCC
Confidence            554442 332 44444444   4444444 44433333344                          444555 555555


Q ss_pred             cccCCCCCcccccCCcccEEEccCcc-ccccCcccccCC-CCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccC
Q 043347          189 NNFSGSIPSFFFNASKLYYLELAYNS-FSGLIPKALGQL-RNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAE  266 (385)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  266 (385)
                      |.+.......+.. ++|++|++++|+ +....+..+..+ ++|+.|++++|.++..+..         .+++|+.|++.+
T Consensus       166 n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---------~~~~L~~L~l~~  235 (239)
T 2xwt_C          166 NGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---------GLEHLKELIARN  235 (239)
T ss_dssp             CCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---------TCTTCSEEECTT
T ss_pred             CCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---------HhccCceeeccC
Confidence            5444222223333 456666666663 554444555555 6666666666665544321         345566666554


Q ss_pred             C
Q 043347          267 N  267 (385)
Q Consensus       267 ~  267 (385)
                      +
T Consensus       236 ~  236 (239)
T 2xwt_C          236 T  236 (239)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=3e-23  Score=186.49  Aligned_cols=252  Identities=19%  Similarity=0.183  Sum_probs=140.8

Q ss_pred             CCCCccCcccccEEEeecccccCCCC----cccCCCcCCcEEEecccccc---cccCccccCCCCCcEEEccCCcccccC
Q 043347           97 IPRDLGNSTKLKLLYLSFNNLIGEIP----QEIGSLRNLEILRIDQNNLV---GFIPDTIFNMSTLKTLSLLNNTLSGNL  169 (385)
Q Consensus        97 ~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~l~l~~~~~~~~~  169 (385)
                      ++..+..+++|++|++++|.+....+    ..+..+++|+.|++++|.+.   ...|..+..                  
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~------------------   85 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL------------------   85 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH------------------
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH------------------
Confidence            44445556666666666666554322    22445666666666654332   111211100                  


Q ss_pred             CCCcccCCCCCCceEEccccccCC----CCCcccccCCcccEEEccCccccccCcccc----cCC---------CCccEE
Q 043347          170 PSSKKLIGLPNLEGLILGLNNFSG----SIPSFFFNASKLYYLELAYNSFSGLIPKAL----GQL---------RNLERL  232 (385)
Q Consensus       170 ~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~---------~~L~~L  232 (385)
                       -...+..+++|++|++++|.+..    ..+..+..+++|++|++++|.+....+..+    ..+         ++|+.|
T Consensus        86 -l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L  164 (386)
T 2ca6_A           86 -LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI  164 (386)
T ss_dssp             -HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred             -HHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence             00012344555555555555443    123344556666666666666543222222    222         677777


Q ss_pred             EecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCC-----CCCcccccccceeEEEeeccccC----CCCCcccc
Q 043347          233 GLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGV-----LPSSIGNLSVSVEEIYMYKCNIH----GRIPKEIG  303 (385)
Q Consensus       233 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~~l~~L~l~~~~~~----~~~~~~~~  303 (385)
                      ++++|.++...  ...+...+..+++|+.|++++|.+...     .+..+... ++++.|++++|.+.    ..++..+.
T Consensus       165 ~L~~n~l~~~~--~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~  241 (386)
T 2ca6_A          165 ICGRNRLENGS--MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALK  241 (386)
T ss_dssp             ECCSSCCTGGG--HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred             ECCCCCCCcHH--HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHHHHHHc
Confidence            77777665321  112234566666777777777766521     22233333 56777777777764    34555667


Q ss_pred             CCCCccEEECcCccccCC----Ccccccc--CCCCCeEeccCCcccC----CChhhh-hcCCCccEEEccCCcccccC
Q 043347          304 NLINLTKLSLGYNNLSGS----LPITLGR--LKKLQGLDLQNNKFEG----PIPHEF-CHFSRLYKFYLNRNKLSGSI  370 (385)
Q Consensus       304 ~~~~L~~L~l~~~~~~~~----~~~~~~~--~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~~~  370 (385)
                      .+++|++|++++|.+.+.    ++..+..  +++|+.|++++|.+++    .++..+ .++++|+.|++++|++++..
T Consensus       242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            777888888888877643    3444433  7788888888888775    355555 44788888888888877554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=3.2e-22  Score=178.00  Aligned_cols=261  Identities=20%  Similarity=0.201  Sum_probs=173.6

Q ss_pred             EEecccccccccCCCCccCcccccEEEeecccccCCCC----cccCCCc-CCcEEEecccccccccCccccCC-----CC
Q 043347           85 RVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP----QEIGSLR-NLEILRIDQNNLVGFIPDTIFNM-----ST  154 (385)
Q Consensus        85 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~  154 (385)
                      .++++.+.+.+..|..+...++|++|++++|.+.+..+    ..+..++ +|++|++++|.+....+..+...     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35677787776666666667779999999999886665    6677888 89999999998887666555554     88


Q ss_pred             CcEEEccCCcccccCCCC--cccCCC-CCCceEEccccccCCCCCccc----cc-CCcccEEEccCccccccCcc----c
Q 043347          155 LKTLSLLNNTLSGNLPSS--KKLIGL-PNLEGLILGLNNFSGSIPSFF----FN-ASKLYYLELAYNSFSGLIPK----A  222 (385)
Q Consensus       155 L~~l~l~~~~~~~~~~~~--~~~~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~~----~  222 (385)
                      |++|++++|.+.+..+..  ..+..+ ++|++|++++|.+.+.....+    .. +++|++|++++|.+.+....    .
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999998876432211  013344 788888888888775444333    22 35888888888887754333    3


Q ss_pred             ccCCC-CccEEEecCCcccccchhhhhhhHhhhcc-cCceEEEccCCCCCCCCCC----cccccccceeEEEeeccccCC
Q 043347          223 LGQLR-NLERLGLQSNYLTSSTSELMSLFSALVNC-KSLKVIVLAENPVDGVLPS----SIGNLSVSVEEIYMYKCNIHG  296 (385)
Q Consensus       223 ~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~----~~~~~~~~l~~L~l~~~~~~~  296 (385)
                      +...+ +|+.|++++|.++......  +...+..+ ++|+.|++++|.+.+....    .+....+++++|++++|.+.+
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~--l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAE--LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHH--HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHH--HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            34444 8888888888877654322  33455666 4888888888887753322    222223477777887777765


Q ss_pred             CCC----ccccCCCCccEEECcCccccCC-------CccccccCCCCCeEeccCCcccCCCh
Q 043347          297 RIP----KEIGNLINLTKLSLGYNNLSGS-------LPITLGRLKKLQGLDLQNNKFEGPIP  347 (385)
Q Consensus       297 ~~~----~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~  347 (385)
                      ..+    ..+..+++|+.|++++|.+.+.       ++..+..+++|+.|++++|++.+..+
T Consensus       240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            433    2335567777777777774422       22244556667777777777765433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=3.9e-22  Score=175.97  Aligned_cols=255  Identities=18%  Similarity=0.185  Sum_probs=153.6

Q ss_pred             CCcEEecccccccccCCCCccCc--ccccEEEeecccccCCCCcccCCCcCCcEEEecccccccc-cCccccCCCCCcEE
Q 043347           82 ELSRVSLSFNQFTGRIPRDLGNS--TKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGF-IPDTIFNMSTLKTL  158 (385)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l  158 (385)
                      .++.++++++.+.   +..+..+  +.++.+++.++.+.+..+. +..+++|++|++++|.+... .+..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            4788899887665   3445555  7899999999888755444 56788999999998887654 55667788888888


Q ss_pred             EccCCcccccCCCCcccCCCCCCceEEcccc-ccCC-CCCcccccCCcccEEEccCc-ccccc-CcccccCCC-CccEEE
Q 043347          159 SLLNNTLSGNLPSSKKLIGLPNLEGLILGLN-NFSG-SIPSFFFNASKLYYLELAYN-SFSGL-IPKALGQLR-NLERLG  233 (385)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~-~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~  233 (385)
                      ++++|.+.+..+.  .+..+++|++|++++| .+++ ..+..+..+++|++|++++| .+++. .+..+..++ +|+.|+
T Consensus       124 ~L~~~~l~~~~~~--~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          124 SLEGLRLSDPIVN--TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             ECTTCBCCHHHHH--HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             eCcCcccCHHHHH--HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            8888876543322  2445677777777776 3432 13334555666777777666 55432 234455566 666666


Q ss_pred             ecCCc--ccccchhhhhhhHhhhcccCceEEEccCCC-CCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccE
Q 043347          234 LQSNY--LTSSTSELMSLFSALVNCKSLKVIVLAENP-VDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTK  310 (385)
Q Consensus       234 l~~~~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~  310 (385)
                      +++|.  +++.  .   +...+..+++|+.|++++|. +++.                         .+..+..+++|++
T Consensus       202 l~~~~~~~~~~--~---l~~~~~~~~~L~~L~l~~~~~l~~~-------------------------~~~~l~~l~~L~~  251 (336)
T 2ast_B          202 LSGYRKNLQKS--D---LSTLVRRCPNLVHLDLSDSVMLKND-------------------------CFQEFFQLNYLQH  251 (336)
T ss_dssp             CCSCGGGSCHH--H---HHHHHHHCTTCSEEECTTCTTCCGG-------------------------GGGGGGGCTTCCE
T ss_pred             eCCCcccCCHH--H---HHHHHhhCCCCCEEeCCCCCcCCHH-------------------------HHHHHhCCCCCCE
Confidence            66663  2211  0   22344556666666666655 3333                         3334555566777


Q ss_pred             EECcCcc-ccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCccc
Q 043347          311 LSLGYNN-LSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLG  375 (385)
Q Consensus       311 L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  375 (385)
                      |++++|. +.......+..+++|+.|++++| +++.....+..  ++..|++++|+++++.|..+.
T Consensus       252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~--~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE--ALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHH--HSTTSEESCCCSCCTTCSSCS
T ss_pred             eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHh--hCcceEEecccCccccCCccc
Confidence            7776663 22222224556677777777777 44333333322  233444666777766665544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=1.5e-22  Score=180.24  Aligned_cols=259  Identities=17%  Similarity=0.182  Sum_probs=167.0

Q ss_pred             EEecCccccCCCCcccccccceeceeEeecCccccCCCh----hhhcCCC-cccEEEccCCcccCcCCCCccCC-----C
Q 043347           12 LVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPD----DMCEGLP-RLKGLYVSYNQFKGPIPNNLWHC-----K   81 (385)
Q Consensus        12 L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~   81 (385)
                      ..++.+.+.+.+|..+....+++ +|++++|.++ ..+.    ..+..++ +|++|++++|.+.+..+..+..+     +
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~-~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVT-SLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCC-EEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             cccccccchHHHHHHHhCCCCce-EEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            46777777766665555555576 7888888888 5554    4555677 78888888888876555555553     8


Q ss_pred             CCcEEecccccccccCCCCc----cCc-ccccEEEeecccccCCCCccc----CC-CcCCcEEEecccccccccC----c
Q 043347           82 ELSRVSLSFNQFTGRIPRDL----GNS-TKLKLLYLSFNNLIGEIPQEI----GS-LRNLEILRIDQNNLVGFIP----D  147 (385)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~~l----~~l-~~L~~L~l~~~~~~~~~~~~~----~~-l~~L~~L~l~~~~~~~~~~----~  147 (385)
                      +|++|++++|.+.+..+..+    ..+ ++|++|++++|.+.+..+..+    .. ..+|++|++++|.+.....    .
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            88888888888775544433    334 788888888888776555443    33 3588888888888774332    3


Q ss_pred             cccCCC-CCcEEEccCCcccccCCCC--cccCCC-CCCceEEccccccCCCC----Cccccc-CCcccEEEccCcccccc
Q 043347          148 TIFNMS-TLKTLSLLNNTLSGNLPSS--KKLIGL-PNLEGLILGLNNFSGSI----PSFFFN-ASKLYYLELAYNSFSGL  218 (385)
Q Consensus       148 ~~~~l~-~L~~l~l~~~~~~~~~~~~--~~~~~~-~~L~~L~l~~~~~~~~~----~~~~~~-~~~L~~L~l~~~~~~~~  218 (385)
                      .+...+ +|++|++++|.+.+..+..  ..+... ++|++|++++|.+.+..    +..+.. .++|++|++++|.+.+.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            334444 7888888888775432211  113344 47888888888776422    223333 35788888888877654


Q ss_pred             Cc----ccccCCCCccEEEecCCcccccchh-hhhhhHhhhcccCceEEEccCCCCCCC
Q 043347          219 IP----KALGQLRNLERLGLQSNYLTSSTSE-LMSLFSALVNCKSLKVIVLAENPVDGV  272 (385)
Q Consensus       219 ~~----~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~  272 (385)
                      ..    ..+..+++|+.|++++|.+...... ...+...+..+++|+.|++++|.+.+.
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            33    3345667788888888775555443 233344566777777777777776654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=1.6e-22  Score=178.46  Aligned_cols=220  Identities=17%  Similarity=0.185  Sum_probs=112.5

Q ss_pred             eeEeecCccccCCChhhhcCC--CcccEEEccCCcccCcCCCCccCCCCCcEEeccccccccc-CCCCccCcccccEEEe
Q 043347           36 GLDFSNNSLTGSFPDDMCEGL--PRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR-IPRDLGNSTKLKLLYL  112 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l  112 (385)
                      .++++++.+.    +..+..+  ++++.++++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++
T Consensus        51 ~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           51 TLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             EEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             eeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence            5666665544    1222233  5666666666666544333 34566666666666655433 4445556666666666


Q ss_pred             ecccccCCCCcccCCCcCCcEEEeccc-ccccc-cCccccCCCCCcEEEccCC-ccccc-CCCCcccCCCC-CCceEEcc
Q 043347          113 SFNNLIGEIPQEIGSLRNLEILRIDQN-NLVGF-IPDTIFNMSTLKTLSLLNN-TLSGN-LPSSKKLIGLP-NLEGLILG  187 (385)
Q Consensus       113 ~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~l~l~~~-~~~~~-~~~~~~~~~~~-~L~~L~l~  187 (385)
                      ++|.+.+..+..++.+++|++|++++| .++.. .+..+..+++|++|++++| .+.+. ++  ..+..++ +|++|+++
T Consensus       126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ--VAVAHVSETITQLNLS  203 (336)
T ss_dssp             TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH--HHHHHSCTTCCEEECC
T ss_pred             cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH--HHHHhcccCCCEEEeC
Confidence            666655455555666666666666666 34431 3334555666666666665 44321 11  1133455 56666665


Q ss_pred             ccc--cC-CCCCcccccCCcccEEEccCcc-ccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEE
Q 043347          188 LNN--FS-GSIPSFFFNASKLYYLELAYNS-FSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIV  263 (385)
Q Consensus       188 ~~~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  263 (385)
                      +|.  ++ ...+..+..+++|++|++++|. +++..+..+..+++|+.|++++|.  ...+.   ....+..+++|+.|+
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~---~~~~l~~~~~L~~L~  278 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPE---TLLELGEIPTLKTLQ  278 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGG---GGGGGGGCTTCCEEE
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHH---HHHHHhcCCCCCEEe
Confidence            552  22 1122334445556666665555 343334445555556666655553  11111   112344455555555


Q ss_pred             ccCC
Q 043347          264 LAEN  267 (385)
Q Consensus       264 l~~~  267 (385)
                      +++|
T Consensus       279 l~~~  282 (336)
T 2ast_B          279 VFGI  282 (336)
T ss_dssp             CTTS
T ss_pred             ccCc
Confidence            5554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=4.8e-20  Score=154.23  Aligned_cols=179  Identities=15%  Similarity=0.107  Sum_probs=140.1

Q ss_pred             CcccEEEecCccccCCCCcccccccceeceeEeecCc-cccCCChhhhcCCCcccEEEccC-CcccCcCCCCccCCCCCc
Q 043347            7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNS-LTGSFPDDMCEGLPRLKGLYVSY-NQFKGPIPNNLWHCKELS   84 (385)
Q Consensus         7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~   84 (385)
                      +++++|++++|.+++..+..+.++++++ +|++++|. ++ .++...+..+++|++|++++ |.+.+..+..|..+++|+
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~-~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNIS-RIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCC-EEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCc-EEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            3799999999999855555788999999 79999997 88 88888888999999999998 999877778899999999


Q ss_pred             EEecccccccccCCCCccCccccc---EEEeecc-cccCCCCcccCCCcCCc-EEEecccccccccCccccCCCCCcEEE
Q 043347           85 RVSLSFNQFTGRIPRDLGNSTKLK---LLYLSFN-NLIGEIPQEIGSLRNLE-ILRIDQNNLVGFIPDTIFNMSTLKTLS  159 (385)
Q Consensus        85 ~L~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~l~  159 (385)
                      +|++++|.+.+ +|. +..+++|+   +|++++| .+....+..|..+++|+ .|++++|.++...+..+.. ++|+.++
T Consensus       109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~  185 (239)
T 2xwt_C          109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVY  185 (239)
T ss_dssp             EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred             EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence            99999999884 665 78888888   9999999 88866666799999999 9999999987444443434 6778888


Q ss_pred             ccCCc-ccccCCCCcccCCC-CCCceEEccccccC
Q 043347          160 LLNNT-LSGNLPSSKKLIGL-PNLEGLILGLNNFS  192 (385)
Q Consensus       160 l~~~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~  192 (385)
                      +++|+ +....+.  .+..+ ++|+.|++++|.++
T Consensus       186 L~~n~~l~~i~~~--~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          186 LNKNKYLTVIDKD--AFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             CTTCTTCCEECTT--TTTTCSBCCSEEECTTCCCC
T ss_pred             cCCCCCcccCCHH--HhhccccCCcEEECCCCccc
Confidence            77774 5432121  14444 55555555555444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=4.9e-23  Score=185.13  Aligned_cols=268  Identities=22%  Similarity=0.235  Sum_probs=164.2

Q ss_pred             cCCCCccCCCCCcEEecccccccccC----CCCccCcccccEEEeecccc---cCCCCccc-------CCCcCCcEEEec
Q 043347           72 PIPNNLWHCKELSRVSLSFNQFTGRI----PRDLGNSTKLKLLYLSFNNL---IGEIPQEI-------GSLRNLEILRID  137 (385)
Q Consensus        72 ~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~---~~~~~~~~-------~~l~~L~~L~l~  137 (385)
                      .+...+..+++|++|++++|.+....    +..+..+++|++|++++|.+   .+.+|..+       ..+++|++|+++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            45556778899999999999887543    34577899999999998643   33344444       688999999999


Q ss_pred             cccccc----ccCccccCCCCCcEEEccCCcccccCCCC--cccCCC---------CCCceEEccccccCC-CCC---cc
Q 043347          138 QNNLVG----FIPDTIFNMSTLKTLSLLNNTLSGNLPSS--KKLIGL---------PNLEGLILGLNNFSG-SIP---SF  198 (385)
Q Consensus       138 ~~~~~~----~~~~~~~~l~~L~~l~l~~~~~~~~~~~~--~~~~~~---------~~L~~L~l~~~~~~~-~~~---~~  198 (385)
                      +|.+..    .++..+..+++|++|++++|.+....+..  ..+..+         ++|++|++++|.+.. ..+   ..
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            999876    35566778899999999998875321110  001122         566777777666542 111   23


Q ss_pred             cccCCcccEEEccCcccccc-----CcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCC
Q 043347          199 FFNASKLYYLELAYNSFSGL-----IPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVL  273 (385)
Q Consensus       199 ~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  273 (385)
                      +..+++|++|++++|.+...     .+..+..+++|+.|++++|.++..+  ...+...+..+++|+.|++++|.+.+..
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g--~~~l~~~l~~~~~L~~L~L~~n~i~~~~  260 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG--SSALAIALKSWPNLRELGLNDCLLSARG  260 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH--HHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH--HHHHHHHHccCCCcCEEECCCCCCchhh
Confidence            44556666666666655421     1124455666666666666554321  1113344555566666666665554321


Q ss_pred             CCcccccccceeEEEeeccccCCCCCccc--cCCCCccEEECcCccccC----CCcccc-ccCCCCCeEeccCCcccCCC
Q 043347          274 PSSIGNLSVSVEEIYMYKCNIHGRIPKEI--GNLINLTKLSLGYNNLSG----SLPITL-GRLKKLQGLDLQNNKFEGPI  346 (385)
Q Consensus       274 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~~~  346 (385)
                      ..                     .++..+  +.+++|++|++++|.+.+    .++..+ ..+++|+.|++++|++++..
T Consensus       261 ~~---------------------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          261 AA---------------------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HH---------------------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HH---------------------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            11                     022333  236778888888887775    255555 45788888888888887665


Q ss_pred             h--hhhhc-CCCccEEEcc
Q 043347          347 P--HEFCH-FSRLYKFYLN  362 (385)
Q Consensus       347 ~--~~~~~-~~~L~~L~l~  362 (385)
                      +  ..+.. +++++.+++.
T Consensus       320 ~~~~~l~~~l~~~~~~~l~  338 (386)
T 2ca6_A          320 DVVDEIREVFSTRGRGELD  338 (386)
T ss_dssp             HHHHHHHHHHHHHTCCEEC
T ss_pred             hHHHHHHHHhhhcCcchhh
Confidence            3  33332 4554444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=1.7e-19  Score=152.02  Aligned_cols=176  Identities=22%  Similarity=0.208  Sum_probs=110.5

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN  115 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  115 (385)
                      .++++++.++ .+|..+.   ++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        18 ~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           18 EVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             EEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            4666666666 5555442   45666666666666555556666666666666666666555555666666666666666


Q ss_pred             cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC
Q 043347          116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI  195 (385)
Q Consensus       116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  195 (385)
                      .+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+....+.  .+..+++|++|++++|.+....
T Consensus        94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG--AFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCC
T ss_pred             cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHH--HcCcCcCCCEEECCCCcCCccC
Confidence            66655555566666666666666666655445556666677777766666533221  2556667777777777766555


Q ss_pred             CcccccCCcccEEEccCccccc
Q 043347          196 PSFFFNASKLYYLELAYNSFSG  217 (385)
Q Consensus       196 ~~~~~~~~~L~~L~l~~~~~~~  217 (385)
                      +..+..+++|+.|++++|.+..
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCT
T ss_pred             HHHHhCCCCCCEEEeeCCceeC
Confidence            5566677777777777777654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=2.9e-19  Score=150.57  Aligned_cols=185  Identities=20%  Similarity=0.221  Sum_probs=151.8

Q ss_pred             CcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEe
Q 043347           57 PRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRI  136 (385)
Q Consensus        57 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  136 (385)
                      +..++++++++.+. .++..+.  ++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|+.|++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            45688999998887 4454444  68999999999998777778999999999999999998777777899999999999


Q ss_pred             cccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCcccc
Q 043347          137 DQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFS  216 (385)
Q Consensus       137 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  216 (385)
                      ++|.+....+..+..+++|++|++++|.+....+.  .+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG--VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChh--HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            99999877777788899999999999988744332  2667888999999999888766667888889999999998888


Q ss_pred             ccCcccccCCCCccEEEecCCcccccchhh
Q 043347          217 GLIPKALGQLRNLERLGLQSNYLTSSTSEL  246 (385)
Q Consensus       217 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  246 (385)
                      ...+..+..+++|+.|++++|.+.......
T Consensus       169 ~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~  198 (251)
T 3m19_A          169 SVPHGAFDRLGKLQTITLFGNQFDCSRCEI  198 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSCCBCTTSTTH
T ss_pred             ccCHHHHhCCCCCCEEEeeCCceeCCcccc
Confidence            776677888888999999888877653433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=1e-20  Score=164.60  Aligned_cols=233  Identities=16%  Similarity=0.153  Sum_probs=140.1

Q ss_pred             ccccEEEeecccccCCCCc---ccCCCcCCcEEEecccccccccCccc--cCCCCCcEEEccCCcccccCCCC--cccCC
Q 043347          105 TKLKLLYLSFNNLIGEIPQ---EIGSLRNLEILRIDQNNLVGFIPDTI--FNMSTLKTLSLLNNTLSGNLPSS--KKLIG  177 (385)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~l~l~~~~~~~~~~~~--~~~~~  177 (385)
                      ..++.+.+.++.+......   .+..+++|++|++++|.+....+..+  ..+++|++|++++|.+.+..+..  ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            3466777766554321100   01134568888888888776666666  77788888888888776432211  11335


Q ss_pred             CCCCceEEccccccCCCCCcccccCCcccEEEccCcccccc----CcccccCCCCccEEEecCCcccccchhhhhhhH-h
Q 043347          178 LPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGL----IPKALGQLRNLERLGLQSNYLTSSTSELMSLFS-A  252 (385)
Q Consensus       178 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~  252 (385)
                      +++|++|++++|.+....+..+..+++|++|++++|++...    ....+..+++|+.|++++|.++..+.    ... .
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~l  219 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG----VCAAL  219 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH----HHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH----HHHHH
Confidence            67777777777777666666677777777777777765321    11223566777777777777654322    111 2


Q ss_pred             hhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCC
Q 043347          253 LVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKL  332 (385)
Q Consensus       253 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  332 (385)
                      +..+++|+.|++++|.+.+..|..+...                      ..+++|++|++++|.++ .+|..+.  ++|
T Consensus       220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~----------------------~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L  274 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNSLRATVNPSAPRC----------------------MWSSALNSLNLSFAGLE-QVPKGLP--AKL  274 (310)
T ss_dssp             HHHTCCCSSEECTTSCCCCCCCSCCSSC----------------------CCCTTCCCEECCSSCCC-SCCSCCC--SCC
T ss_pred             HhcCCCCCEEECCCCCCCccchhhHHhc----------------------cCcCcCCEEECCCCCCC-chhhhhc--CCC
Confidence            4566677777777776665544433222                      11256777777777666 4454443  667


Q ss_pred             CeEeccCCcccCCChhhhhcCCCccEEEccCCcccc
Q 043347          333 QGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSG  368 (385)
Q Consensus       333 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  368 (385)
                      +.|++++|++++. +. +..+++|+.|++++|+++.
T Consensus       275 ~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          275 RVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            7777777777642 22 4556777777777777653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=4.9e-20  Score=159.95  Aligned_cols=197  Identities=24%  Similarity=0.320  Sum_probs=141.0

Q ss_pred             cccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCccc
Q 043347           27 IFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTK  106 (385)
Q Consensus        27 ~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~  106 (385)
                      ..++++++ +|+++++.++ .++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+ . ..+..+++
T Consensus        37 ~~~l~~L~-~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~  108 (308)
T 1h6u_A           37 QADLDGIT-TLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQS  108 (308)
T ss_dssp             HHHHHTCC-EEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTT
T ss_pred             HHHcCCcC-EEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCC
Confidence            34566666 6888887777 5552  3467788888888887764333  7777888888888887763 2 35777788


Q ss_pred             ccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEc
Q 043347          107 LKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLIL  186 (385)
Q Consensus       107 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l  186 (385)
                      |++|++++|.+.+ ++ .+..+++|+.|++++|.+....+  +..+++|+.|++++|.+.+..+    +..+++|+.|++
T Consensus       109 L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l  180 (308)
T 1h6u_A          109 IKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKA  180 (308)
T ss_dssp             CCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEEC
T ss_pred             CCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh----hcCCCCCCEEEC
Confidence            8888888887764 33 37778888888888887764432  6777888888888887764221    567788888888


Q ss_pred             cccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccc
Q 043347          187 GLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSST  243 (385)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  243 (385)
                      ++|.+.+..+  +..+++|++|++++|.+.+..  .+..+++|+.|++++|.++..+
T Consensus       181 ~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          181 DDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             CSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred             CCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence            8887764332  677888888888888887554  3778888888888888876643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=9.9e-20  Score=158.04  Aligned_cols=194  Identities=21%  Similarity=0.273  Sum_probs=123.9

Q ss_pred             cCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCc
Q 043347          125 IGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASK  204 (385)
Q Consensus       125 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  204 (385)
                      +..+++|+.|+++++.+... + .+..+++|+.|++++|.+.+..+    +..+++|++|++++|.+.+.  ..+..+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~l~~~--~~~~~l~~  108 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLKNV--SAIAGLQS  108 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCCCSCC--GGGTTCTT
T ss_pred             HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCcCCCc--hhhcCCCC
Confidence            34577888888888877643 2 56777888888888877664322    56677777887777776643  34666777


Q ss_pred             ccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccce
Q 043347          205 LYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSV  284 (385)
Q Consensus       205 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l  284 (385)
                      |++|++++|.+.+..  .+..+++|+.|++++|.+....        .+..+++|+.|++++|.+.+..+  +..+ +++
T Consensus       109 L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~--------~l~~l~~L~~L~l~~n~l~~~~~--l~~l-~~L  175 (308)
T 1h6u_A          109 IKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS--------PLAGLTNLQYLSIGNAQVSDLTP--LANL-SKL  175 (308)
T ss_dssp             CCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--------GGGGCTTCCEEECCSSCCCCCGG--GTTC-TTC
T ss_pred             CCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCc--------cccCCCCccEEEccCCcCCCChh--hcCC-CCC
Confidence            777777777776432  3667777777777777766542        25566777777777776664332  3333 566


Q ss_pred             eEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCccc
Q 043347          285 EEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFE  343 (385)
Q Consensus       285 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  343 (385)
                      +.|++++|.+.+..+  +..+++|++|++++|.+.+..  .+..+++|+.|++++|+++
T Consensus       176 ~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             CEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            666666666653322  555666666666666665332  2556666666666666665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.82  E-value=8.3e-20  Score=158.90  Aligned_cols=230  Identities=18%  Similarity=0.142  Sum_probs=156.7

Q ss_pred             CCCCcEEecccccccccCCC---CccCcccccEEEeecccccCCCCccc--CCCcCCcEEEecccccccccC----cccc
Q 043347           80 CKELSRVSLSFNQFTGRIPR---DLGNSTKLKLLYLSFNNLIGEIPQEI--GSLRNLEILRIDQNNLVGFIP----DTIF  150 (385)
Q Consensus        80 ~~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~  150 (385)
                      ...++.+.+..+.+......   ....+++|++|++++|.+.+..|..+  ..+++|++|++++|.+....+    ..+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            34577788777665421111   12235679999999999988888887  899999999999999875433    3345


Q ss_pred             CCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCC----CCcccccCCcccEEEccCccccccCc--c-cc
Q 043347          151 NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGS----IPSFFFNASKLYYLELAYNSFSGLIP--K-AL  223 (385)
Q Consensus       151 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~--~-~~  223 (385)
                      .+++|++|++++|.+....+..  +..+++|++|++++|.+.+.    ....+..+++|++|++++|+++....  . .+
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~  220 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQ--VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA  220 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTS--CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHH--hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence            7899999999999997554433  77899999999999986421    13344678999999999999864321  1 34


Q ss_pred             cCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCcccc
Q 043347          224 GQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIG  303 (385)
Q Consensus       224 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~  303 (385)
                      ..+++|+.|++++|.+....+..   ...+..+++|+.|++++|.+. ..|..                         +.
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~---~~~~~~~~~L~~L~Ls~N~l~-~lp~~-------------------------~~  271 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPS---APRCMWSSALNSLNLSFAGLE-QVPKG-------------------------LP  271 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSC---CSSCCCCTTCCCEECCSSCCC-SCCSC-------------------------CC
T ss_pred             hcCCCCCEEECCCCCCCccchhh---HHhccCcCcCCEEECCCCCCC-chhhh-------------------------hc
Confidence            67899999999999988752210   112222367777777777666 22322                         21


Q ss_pred             CCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccC
Q 043347          304 NLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEG  344 (385)
Q Consensus       304 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  344 (385)
                        ++|++|++++|.+++. +. +..+++|+.|++++|++++
T Consensus       272 --~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          272 --AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             --SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             --CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence              4566666666666532 22 4555666666666666653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=2.5e-18  Score=152.06  Aligned_cols=240  Identities=17%  Similarity=0.150  Sum_probs=111.2

Q ss_pred             cEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEeccccccccc-CccccCCCCCcE-EEcc
Q 043347           84 SRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFI-PDTIFNMSTLKT-LSLL  161 (385)
Q Consensus        84 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~-l~l~  161 (385)
                      ++++.+++.++ .+|..+  .+++++|++++|.++...+.+|..+++|++|++++|.+.... +..|.+++++.+ +.+.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            34444554444 444443  245556666665555333344555555565555555543322 233444544443 2233


Q ss_pred             CCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecC-Cccc
Q 043347          162 NNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQS-NYLT  240 (385)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~  240 (385)
                      .|.+.                          ...+..+..+++|++|++++|++....+..+.....+..+++.+ +.+.
T Consensus        89 ~N~l~--------------------------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~  142 (350)
T 4ay9_X           89 ANNLL--------------------------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH  142 (350)
T ss_dssp             ETTCC--------------------------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC
T ss_pred             CCccc--------------------------ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc
Confidence            34433                          33333444444444444444444433333333334444444433 2233


Q ss_pred             ccchhhhhhhHhhhcc-cCceEEEccCCCCCCCCCCcccccccceeEEEeecc-ccCCCCCccccCCCCccEEECcCccc
Q 043347          241 SSTSELMSLFSALVNC-KSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKC-NIHGRIPKEIGNLINLTKLSLGYNNL  318 (385)
Q Consensus       241 ~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~  318 (385)
                      ..+.      ..+..+ ..++.|++++|.+....+..+ .. .+++++.+.++ .+....+.+|..+++|+.|++++|.+
T Consensus       143 ~l~~------~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l  214 (350)
T 4ay9_X          143 TIER------NSFVGLSFESVILWLNKNGIQEIHNSAF-NG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI  214 (350)
T ss_dssp             EECT------TSSTTSBSSCEEEECCSSCCCEECTTSS-TT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred             cccc------cchhhcchhhhhhccccccccCCChhhc-cc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc
Confidence            2221      122222 235555555555553322222 22 35666666543 33333334556666777777777766


Q ss_pred             cCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCC
Q 043347          319 SGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRN  364 (385)
Q Consensus       319 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  364 (385)
                      +...+..   +.+|+.|.+.++.-.+.+| .+..+++|+.+++.++
T Consensus       215 ~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          215 HSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             CccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            6322222   3455555554443333444 2555667777776553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=1e-18  Score=154.56  Aligned_cols=202  Identities=18%  Similarity=0.141  Sum_probs=115.6

Q ss_pred             cEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCc-CCCCccCCCCCcE-Ee
Q 043347           10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGP-IPNNLWHCKELSR-VS   87 (385)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~-L~   87 (385)
                      ++++.+++.++ .+|..+.  .+++ +|++++|+++ .+|.++|.++++|++|++++|.+.+. ...+|..+++++. +.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~--~~l~-~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP--RNAI-ELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC--TTCS-EEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             CEEEecCCCCC-ccCcCcC--CCCC-EEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            55666666666 5665542  2344 6777777777 67766666677777777777766443 3345666666554 34


Q ss_pred             cccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecc-cccccccCccccCCC-CCcEEEccCCcc
Q 043347           88 LSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQ-NNLVGFIPDTIFNMS-TLKTLSLLNNTL  165 (385)
Q Consensus        88 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~-~L~~l~l~~~~~  165 (385)
                      +..|.+....+..+..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+. .++.|++++|.+
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            445666655556667777777777777766644444455555666666654 344444344444443 466666666666


Q ss_pred             cccCCCCcccCCCCCCceEEccc-cccCCCCCcccccCCcccEEEccCccccccC
Q 043347          166 SGNLPSSKKLIGLPNLEGLILGL-NNFSGSIPSFFFNASKLYYLELAYNSFSGLI  219 (385)
Q Consensus       166 ~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  219 (385)
                      ....+..  + ....|+++.+.+ +.+.....+.|..+++|++|++++|+++...
T Consensus       167 ~~i~~~~--f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp  218 (350)
T 4ay9_X          167 QEIHNSA--F-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP  218 (350)
T ss_dssp             CEECTTS--S-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred             cCCChhh--c-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence            5332221  2 234556666653 3344334445566666666666666665443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=3.9e-18  Score=139.42  Aligned_cols=177  Identities=21%  Similarity=0.207  Sum_probs=83.1

Q ss_pred             eEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeeccc
Q 043347           37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNN  116 (385)
Q Consensus        37 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  116 (385)
                      ++++++.++ .+|..+   .++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus        12 v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           12 VECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             EECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            444444444 444332   2344555555555443333344445555555555554443333334445555555555555


Q ss_pred             ccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCC
Q 043347          117 LIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIP  196 (385)
Q Consensus       117 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  196 (385)
                      +....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+  ..+..+++|++|++++|.+.    
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~----  161 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYIWLHDNPWD----  161 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSCCBC----
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH--HHhccCCCccEEEecCCCee----
Confidence            443333334455555555555555544333344455555555555554442211  11344555555555555332    


Q ss_pred             cccccCCcccEEEccCccccccCcccccCC
Q 043347          197 SFFFNASKLYYLELAYNSFSGLIPKALGQL  226 (385)
Q Consensus       197 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  226 (385)
                         ..+++++.|+++.|.+++..+..++.+
T Consensus       162 ---~~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          162 ---CTCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             ---CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             ---cCCCCHHHHHHHHHhCCceeeccCccc
Confidence               234455555555555555555444433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=4.6e-18  Score=138.96  Aligned_cols=182  Identities=23%  Similarity=0.226  Sum_probs=145.6

Q ss_pred             ccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEec
Q 043347            9 LEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSL   88 (385)
Q Consensus         9 l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l   88 (385)
                      -+.++.+++.++ .+|..+.  ++++ +|+++++.++ .++..++..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus         9 ~~~v~c~~~~l~-~~p~~~~--~~l~-~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   83 (208)
T 2o6s_A            9 GTTVECYSQGRT-SVPTGIP--AQTT-YLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL   83 (208)
T ss_dssp             TTEEECCSSCCS-SCCSCCC--TTCS-EEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCcc-CCCCCCC--CCCc-EEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence            367778887776 5665542  3566 7999999998 778777778999999999999988766667888999999999


Q ss_pred             ccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCccccc
Q 043347           89 SFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGN  168 (385)
Q Consensus        89 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~  168 (385)
                      ++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|+.+++++|.+.  
T Consensus        84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--  161 (208)
T 2o6s_A           84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--  161 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--
T ss_pred             CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--
Confidence            999888555556788999999999999888666666888999999999999888766666888999999999988654  


Q ss_pred             CCCCcccCCCCCCceEEccccccCCCCCcccccCCc
Q 043347          169 LPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASK  204 (385)
Q Consensus       169 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  204 (385)
                             ..++.|+.|++..+.+++..+..++.++.
T Consensus       162 -------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          162 -------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             -------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             -------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence                   24567888888888888777766665443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=1.1e-17  Score=143.77  Aligned_cols=171  Identities=24%  Similarity=0.371  Sum_probs=87.7

Q ss_pred             cCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCc
Q 043347          150 FNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNL  229 (385)
Q Consensus       150 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  229 (385)
                      ..+++|+.+++++|.+... +   .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+.  ..+..+++|
T Consensus        43 ~~l~~L~~L~l~~~~i~~~-~---~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L  114 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV-Q---GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKL  114 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T---TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTC
T ss_pred             hhcCcccEEEccCCCcccC-h---hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCC
Confidence            3566677777776665432 2   14456666666666666654322  55666666666666665532  235566666


Q ss_pred             cEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCcc
Q 043347          230 ERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLT  309 (385)
Q Consensus       230 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~  309 (385)
                      +.|++++|.+...        ..+..+++|+.|++++|.+.+.  ..+..+ ++++.|++++|++.+..+  +..+++|+
T Consensus       115 ~~L~L~~n~i~~~--------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~L~~N~l~~~~~--l~~l~~L~  181 (291)
T 1h6t_A          115 KSLSLEHNGISDI--------NGLVHLPQLESLYLGNNKITDI--TVLSRL-TKLDTLSLEDNQISDIVP--LAGLTKLQ  181 (291)
T ss_dssp             CEEECTTSCCCCC--------GGGGGCTTCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             CEEECCCCcCCCC--------hhhcCCCCCCEEEccCCcCCcc--hhhccC-CCCCEEEccCCccccchh--hcCCCccC
Confidence            6666666665542        2344555666666666555433  222222 344444444444443222  44444444


Q ss_pred             EEECcCccccCCCccccccCCCCCeEeccCCccc
Q 043347          310 KLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFE  343 (385)
Q Consensus       310 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  343 (385)
                      +|++++|.+.+ ++ .+..+++|+.|++++|+++
T Consensus       182 ~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          182 NLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             EEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             EEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence            44444444442 22 2344444444444444444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=2.5e-17  Score=135.49  Aligned_cols=151  Identities=23%  Similarity=0.267  Sum_probs=105.5

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN  115 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  115 (385)
                      .++++++.++ .+|..+.   +++++|++++|.+.+..+..|..+++|++|++++|.+....+..+.++++|++|++++|
T Consensus        15 ~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           15 IVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             EEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             EEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            5677777777 6666542   56777777777777666667777777777777777777666677777777777777777


Q ss_pred             cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccC
Q 043347          116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFS  192 (385)
Q Consensus       116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  192 (385)
                      .+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+.  .+..+++|+.|++++|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG--TFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT--TTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH--HHhCCCCCCEEEeCCCCcC
Confidence            77744444566777777777777777766666777777777777777777644332  2556777777777777654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=2.8e-17  Score=135.22  Aligned_cols=151  Identities=21%  Similarity=0.271  Sum_probs=85.4

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCC-CCccCCCCCcEEecccccccccCCCCccCcccccEEEeec
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIP-NNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSF  114 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  114 (385)
                      .++++++.++ .+|..+.   +.+++|++++|.+.+..+ ..|..+++|++|++++|.+....+..+.++++|++|++++
T Consensus        15 ~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            4566666555 5554332   234566666665554422 3355566666666666665544444556666666666666


Q ss_pred             ccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccC
Q 043347          115 NNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFS  192 (385)
Q Consensus       115 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  192 (385)
                      |.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..  +..+++|+.|++++|.+.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA--FDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT--TTTCTTCCEEECCSCCEE
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH--hcCCCCCCEEEecCcCCc
Confidence            6665444445566666666666666665555555666666666666666655443322  445666666666666544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=1.9e-17  Score=133.97  Aligned_cols=154  Identities=18%  Similarity=0.280  Sum_probs=121.6

Q ss_pred             ccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccc
Q 043347          200 FNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGN  279 (385)
Q Consensus       200 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  279 (385)
                      ..++++++|++++|.+... + .+..+++|+.|++++|.+...        ..+..+++|+.|++++|.+.+..+..+..
T Consensus        41 ~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~~~--------~~l~~l~~L~~L~l~~n~l~~~~~~~l~~  110 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHATNY--------NPISGLSNLERLRIMGKDVTSDKIPNLSG  110 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCSCC--------GGGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred             hhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCCcc--------hhhhcCCCCCEEEeECCccCcccChhhcC
Confidence            5567788888888887743 3 477788888888888866543        35777888888889888888766777776


Q ss_pred             cccceeEEEeeccccCCCCCccccCCCCccEEECcCcc-ccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccE
Q 043347          280 LSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNN-LSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYK  358 (385)
Q Consensus       280 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  358 (385)
                      + +++++|++++|++.+..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|++++. + .+..+++|+.
T Consensus       111 l-~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~  185 (197)
T 4ezg_A          111 L-TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQ  185 (197)
T ss_dssp             C-TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCE
T ss_pred             C-CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCE
Confidence            6 789999999999887777888899999999999998 55 455 688899999999999999853 3 6778999999


Q ss_pred             EEccCCcccc
Q 043347          359 FYLNRNKLSG  368 (385)
Q Consensus       359 L~l~~~~~~~  368 (385)
                      |++++|++.+
T Consensus       186 L~l~~N~i~~  195 (197)
T 4ezg_A          186 LYAFSQTIGG  195 (197)
T ss_dssp             EEECBC----
T ss_pred             EEeeCcccCC
Confidence            9999998864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=1.7e-17  Score=134.26  Aligned_cols=155  Identities=17%  Similarity=0.198  Sum_probs=120.0

Q ss_pred             ccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcc
Q 043347           26 SIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNST  105 (385)
Q Consensus        26 ~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  105 (385)
                      +..++++++ +|+++++.++ .+| . +..+++|++|++++|.+.  ....+..+++|++|++++|.+.+..+..+..++
T Consensus        39 ~~~~l~~L~-~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  112 (197)
T 4ezg_A           39 TEAQMNSLT-YITLANINVT-DLT-G-IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT  112 (197)
T ss_dssp             BHHHHHTCC-EEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred             ChhhcCCcc-EEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence            335677777 7899988888 777 3 347888999999888654  234678888999999999888866778888889


Q ss_pred             cccEEEeecccccCCCCcccCCCcCCcEEEecccc-cccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceE
Q 043347          106 KLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNN-LVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGL  184 (385)
Q Consensus       106 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L  184 (385)
                      +|++|++++|.+.+..+..+..+++|+.|++++|. +.. .+ .+..+++|+.|++++|.+.+. +   .+..+++|+.|
T Consensus       113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~---~l~~l~~L~~L  186 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R---GIEDFPKLNQL  186 (197)
T ss_dssp             TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T---TGGGCSSCCEE
T ss_pred             CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H---HhccCCCCCEE
Confidence            99999999988887677778888999999999887 553 33 578888999999998887642 2   36678889999


Q ss_pred             EccccccC
Q 043347          185 ILGLNNFS  192 (385)
Q Consensus       185 ~l~~~~~~  192 (385)
                      ++++|.+.
T Consensus       187 ~l~~N~i~  194 (197)
T 4ezg_A          187 YAFSQTIG  194 (197)
T ss_dssp             EECBC---
T ss_pred             EeeCcccC
Confidence            99888764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=2.2e-17  Score=141.99  Aligned_cols=174  Identities=27%  Similarity=0.329  Sum_probs=122.9

Q ss_pred             cccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCccc
Q 043347           27 IFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTK  106 (385)
Q Consensus        27 ~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~  106 (385)
                      ...+++++ .|+++++.++ .++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.. . ..+..+++
T Consensus        42 ~~~l~~L~-~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~  113 (291)
T 1h6t_A           42 QNELNSID-QIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKK  113 (291)
T ss_dssp             HHHHHTCC-EEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTT
T ss_pred             hhhcCccc-EEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCC
Confidence            34566666 6788877777 5543  3467788888888877764433  7777888888888877763 2 34777788


Q ss_pred             ccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEc
Q 043347          107 LKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLIL  186 (385)
Q Consensus       107 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l  186 (385)
                      |++|++++|.+.+.  ..+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+..+    +..+++|+.|++
T Consensus       114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~L  185 (291)
T 1h6t_A          114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYL  185 (291)
T ss_dssp             CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEEC
T ss_pred             CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh----hcCCCccCEEEC
Confidence            88888888777642  4567778888888888877654  557777888888888887764322    567788888888


Q ss_pred             cccccCCCCCcccccCCcccEEEccCcccccc
Q 043347          187 GLNNFSGSIPSFFFNASKLYYLELAYNSFSGL  218 (385)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  218 (385)
                      ++|.+.+.  ..+..+++|+.|++++|.+...
T Consensus       186 ~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          186 SKNHISDL--RALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CSSCCCBC--GGGTTCTTCSEEEEEEEEEECC
T ss_pred             CCCcCCCC--hhhccCCCCCEEECcCCcccCC
Confidence            88877643  2367788888888888877653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=5.1e-17  Score=152.81  Aligned_cols=173  Identities=24%  Similarity=0.363  Sum_probs=115.1

Q ss_pred             ccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCC
Q 043347          149 IFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRN  228 (385)
Q Consensus       149 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  228 (385)
                      +..+++|+.|++++|.+... +   .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+...  ..+..+++
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l-~---~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~  110 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSV-Q---GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKK  110 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCC-T---TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTT
T ss_pred             hhcCCCCCEEECcCCCCCCC-h---HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCC
Confidence            45677888888888776532 2   26677888888888887765433  67778888888888877643  25677788


Q ss_pred             ccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCc
Q 043347          229 LERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINL  308 (385)
Q Consensus       229 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L  308 (385)
                      |+.|++++|.+...        ..+..+++|+.|++++|.+.+.  ..+..+ ++|+.|++++|.+.+..+  +..+++|
T Consensus       111 L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L  177 (605)
T 1m9s_A          111 LKSLSLEHNGISDI--------NGLVHLPQLESLYLGNNKITDI--TVLSRL-TKLDTLSLEDNQISDIVP--LAGLTKL  177 (605)
T ss_dssp             CCEEECTTSCCCCC--------GGGGGCTTCSEEECCSSCCCCC--GGGGSC-TTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             CCEEEecCCCCCCC--------ccccCCCccCEEECCCCccCCc--hhhccc-CCCCEEECcCCcCCCchh--hccCCCC
Confidence            88888888877653        2466677777777777777654  333443 566666666666654433  5666666


Q ss_pred             cEEECcCccccCCCccccccCCCCCeEeccCCcccC
Q 043347          309 TKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEG  344 (385)
Q Consensus       309 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  344 (385)
                      +.|++++|.+.+ + ..+..+++|+.|++++|++.+
T Consensus       178 ~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          178 QNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEEC
T ss_pred             CEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcC
Confidence            666666666653 2 245566666666666666653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.72  E-value=9.6e-17  Score=149.35  Aligned_cols=186  Identities=22%  Similarity=0.277  Sum_probs=129.8

Q ss_pred             CCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEE
Q 043347          130 NLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLE  209 (385)
Q Consensus       130 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  209 (385)
                      +++.|++++|.++. +|..+  .++|+.|++++|.+. .+|     ..+++|+.|++++|.++. ++. +..  +|++|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip-----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP-----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC-----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc-----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence            88889998888875 45444  378888888888876 444     246788888888888775 333 433  788888


Q ss_pred             ccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEe
Q 043347          210 LAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYM  289 (385)
Q Consensus       210 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l  289 (385)
                      +++|.++.. +.   .+++|+.|++++|.++..+.          .+++|+.|++++|.+.+ .|. +.   ++|+.|++
T Consensus       127 Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~lp~----------~l~~L~~L~Ls~N~L~~-lp~-l~---~~L~~L~L  187 (571)
T 3cvr_A          127 VDNNQLTML-PE---LPALLEYINADNNQLTMLPE----------LPTSLEVLSVRNNQLTF-LPE-LP---ESLEALDV  187 (571)
T ss_dssp             CCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSC-CCC-CC---TTCCEEEC
T ss_pred             CCCCcCCCC-CC---cCccccEEeCCCCccCcCCC----------cCCCcCEEECCCCCCCC-cch-hh---CCCCEEEC
Confidence            888887753 33   56788888888887776432          35678888888887776 343 32   67888888


Q ss_pred             eccccCCCCCccccCCCCc-------cEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhc
Q 043347          290 YKCNIHGRIPKEIGNLINL-------TKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCH  352 (385)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  352 (385)
                      ++|++. .+|. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..
T Consensus       188 s~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          188 STNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             cCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            888776 3444 433  56       77888887777 56666666777888888888777666666655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=1.2e-16  Score=131.35  Aligned_cols=151  Identities=21%  Similarity=0.274  Sum_probs=96.4

Q ss_pred             cEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecc
Q 043347           10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLS   89 (385)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~   89 (385)
                      +.++++++.++ .+|..+.  ..++ .|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~-~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETIT-EIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCC-EEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCC-EEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            45666666665 5555443  3444 5777777666 5555555566677777777776665556666667777777777


Q ss_pred             cccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcc
Q 043347           90 FNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTL  165 (385)
Q Consensus        90 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~  165 (385)
                      +|.+....+..+.++++|++|++++|.+....+..|..+++|+.|++++|.++...+..+..+++|+.+++++|.+
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            7766643334456667777777777766655566666667777777777766655555566666777777766655

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=2.2e-16  Score=130.74  Aligned_cols=150  Identities=23%  Similarity=0.166  Sum_probs=121.0

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN  115 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  115 (385)
                      .++++++.++ .+|..+.   ++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus        23 ~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           23 TVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             EEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            6888888888 8887653   78889999999888777788888899999999998887554456788899999999998


Q ss_pred             cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccC
Q 043347          116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFS  192 (385)
Q Consensus       116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  192 (385)
                      .+....+..+..+++|+.|++++|.+. .++..+..+++|+.|++++|.+....+  ..+..+++|+.|++.+|.+.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH--GAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT--TTTTTCTTCCEEECTTSCBC
T ss_pred             cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH--HHHhCCCCCCEEEeeCCCcc
Confidence            888666666788899999999998887 566777888999999999988874432  23677888999999988765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=2.2e-17  Score=144.73  Aligned_cols=288  Identities=12%  Similarity=0.049  Sum_probs=163.9

Q ss_pred             CCcccEEEccCCcccCcCCCCccC-CCCCcEEeccccccc--ccCCCCccCcccccEEEeecccccCCCCcccCC-----
Q 043347           56 LPRLKGLYVSYNQFKGPIPNNLWH-CKELSRVSLSFNQFT--GRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGS-----  127 (385)
Q Consensus        56 ~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-----  127 (385)
                      ++++++|.++++- .......+.. +++|++|++++|.+.  .....   .++.++.+....+.+   ...+|..     
T Consensus        24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred             hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhccccccc
Confidence            4567777777642 1111112223 677888888888765  22111   122234444444422   2234555     


Q ss_pred             ---CcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccc----cCCCCCcccc
Q 043347          128 ---LRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNN----FSGSIPSFFF  200 (385)
Q Consensus       128 ---l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~~~  200 (385)
                         |++|+.+++.+ .++......|..+++|+.++++.+.+...-+  .+|..+..+..+......    ...+....+.
T Consensus        97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~--~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~  173 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLP--EALADSVTAIFIPLGSSDAYRFKNRWEHFAFI  173 (329)
T ss_dssp             EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECT--TSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred             ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccch--hhhcCCCceEEecCcchhhhhccccccccccc
Confidence               77777777766 6665666667777777777777666543322  224455445444443311    1111222233


Q ss_pred             cCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCccccc
Q 043347          201 NASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNL  280 (385)
Q Consensus       201 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  280 (385)
                      .+..++.                       .+.+....  ..+..   .........++..+.+.+.-. ......+...
T Consensus       174 ~~~~L~~-----------------------~i~~~~~~--~l~~~---~~~~~~~~~~~~~l~~~~~l~-~~~~~~l~~~  224 (329)
T 3sb4_A          174 EGEPLET-----------------------TIQVGAMG--KLEDE---IMKAGLQPRDINFLTIEGKLD-NADFKLIRDY  224 (329)
T ss_dssp             ESCCCEE-----------------------EEEECTTC--CHHHH---HHHTTCCGGGCSEEEEEECCC-HHHHHHHHHH
T ss_pred             cccccce-----------------------eEEecCCC--cHHHH---HhhcccCccccceEEEeeeec-HHHHHHHHHh
Confidence            3333331                       22222111  00000   001111223334444433211 0111111111


Q ss_pred             ccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCC-eEeccCCcccCCChhhhhcCCCccEE
Q 043347          281 SVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQ-GLDLQNNKFEGPIPHEFCHFSRLYKF  359 (385)
Q Consensus       281 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L  359 (385)
                      +++++++++.+|++......+|.+|++|+++++.++ +......+|.+|++|+ .+++.+ .++...+.+|..|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            256677777776666666677889999999999987 6656677889999999 999988 6776778889999999999


Q ss_pred             EccCCcccccCCCcccccccCcccc
Q 043347          360 YLNRNKLSGSIPSCLGDLNSLRILS  384 (385)
Q Consensus       360 ~l~~~~~~~~~~~~~~~l~~L~~l~  384 (385)
                      ++++++++.+.+.+|.+|++|+.|.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            9999999988899999999999874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=3.2e-17  Score=154.22  Aligned_cols=147  Identities=29%  Similarity=0.381  Sum_probs=59.4

Q ss_pred             CCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEE
Q 043347           55 GLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEIL  134 (385)
Q Consensus        55 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  134 (385)
                      .+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.. . ..+..+++|++|++++|.+.. + ..+..+++|+.|
T Consensus        63 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L  136 (605)
T 1m9s_A           63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESL  136 (605)
T ss_dssp             GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEE
T ss_pred             cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEE
Confidence            34444444444444432221  3444444444444444431 1 234444444444444444432 1 223444444444


Q ss_pred             EecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCcc
Q 043347          135 RIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNS  214 (385)
Q Consensus       135 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  214 (385)
                      ++++|.+...  ..+..+++|+.|++++|.+.+..+    +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.
T Consensus       137 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          137 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             ECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEE
T ss_pred             ECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh----hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCc
Confidence            4444444322  233444444444444444432211    33344444444444444321  223344444444444444


Q ss_pred             c
Q 043347          215 F  215 (385)
Q Consensus       215 ~  215 (385)
                      +
T Consensus       209 l  209 (605)
T 1m9s_A          209 C  209 (605)
T ss_dssp             E
T ss_pred             C
Confidence            3

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.70  E-value=2.6e-16  Score=129.46  Aligned_cols=153  Identities=20%  Similarity=0.251  Sum_probs=121.1

Q ss_pred             cEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecc
Q 043347           10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLS   89 (385)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~   89 (385)
                      ++++++++.++ .+|..+..  .++ .|++++|.+++..+..++..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~~--~~~-~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIPQ--YTA-ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCCT--TCS-EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCCCC--CCC-EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            57888888887 57765532  233 788888888843355666788888888888888887777788888888888888


Q ss_pred             cccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCccc
Q 043347           90 FNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLS  166 (385)
Q Consensus        90 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~  166 (385)
                      +|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|+.+++++|.+.
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            88887666666888888888888888888777778888888888888888888777788888888888888888765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=1.2e-16  Score=141.85  Aligned_cols=175  Identities=22%  Similarity=0.152  Sum_probs=121.3

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCcc-CCCCCcEEecccccccccCCCCccCcccccEEEeec
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLW-HCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSF  114 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  114 (385)
                      .++++++.++ .+|..+.   +.++.|++++|.+.+..+..+. .+++|++|++++|.+....+..+.++++|++|++++
T Consensus        22 ~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           22 ILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             EEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            6788888887 7776553   4578888888888766666666 788888888888888766666778888888888888


Q ss_pred             ccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCccc---CCCCCCceEEcccccc
Q 043347          115 NNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKL---IGLPNLEGLILGLNNF  191 (385)
Q Consensus       115 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~  191 (385)
                      |.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+.. ++... +   ..+++|+.|++++|.+
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~-~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVEL-IKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGG-TC----CTTCCEEECCSSCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHH-hcCcccCCcCCEEECCCCCC
Confidence            88776666667778888888888888776667777777888888887777653 22211 2   3466666666666666


Q ss_pred             CCCCCcccccCCc--ccEEEccCcccc
Q 043347          192 SGSIPSFFFNASK--LYYLELAYNSFS  216 (385)
Q Consensus       192 ~~~~~~~~~~~~~--L~~L~l~~~~~~  216 (385)
                      .......+..++.  ++.|++++|.+.
T Consensus       176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          176 KKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CccCHHHhhhccHhhcceEEecCCCcc
Confidence            6444444555554  355666666553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.70  E-value=7.1e-16  Score=138.61  Aligned_cols=329  Identities=13%  Similarity=0.103  Sum_probs=225.6

Q ss_pred             cccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCc
Q 043347           25 ASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNS  104 (385)
Q Consensus        25 ~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l  104 (385)
                      .++.++.++. .+.+.++ ++ .++..+|.++++|+.+++.++ ++.....+|..|.+|+.+.+..+ +......++.++
T Consensus        65 ~AF~~c~~L~-~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~  139 (394)
T 4fs7_A           65 AAFQGCRKVT-EIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC  139 (394)
T ss_dssp             TTTTTCTTEE-EEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred             HHhhCCCCce-EEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence            4566788888 6888754 66 788888988999999999765 55566778889999998877654 333444566666


Q ss_pred             ccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceE
Q 043347          105 TKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGL  184 (385)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L  184 (385)
                      ..++......  .......+|..+.+|+.+.+..+. .......|..+.+|+.+.+..+ +. .+. ..++..+..|+.+
T Consensus       140 ~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~-~~~F~~~~~L~~i  213 (394)
T 4fs7_A          140 DFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIR-DYCFAECILLENM  213 (394)
T ss_dssp             CCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EEC-TTTTTTCTTCCBC
T ss_pred             cccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeC-chhhcccccccee
Confidence            5443333222  222445568888999999887553 3455667888899998888765 22 122 2337778888887


Q ss_pred             EccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEc
Q 043347          185 ILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVL  264 (385)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  264 (385)
                      .+..+...  ..+....+..++.+.+... +.......+..+..++.+.+..+... ..      ...+..++.++.+..
T Consensus       214 ~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~------~~~F~~~~~l~~~~~  283 (394)
T 4fs7_A          214 EFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IG------GSLFYNCSGLKKVIY  283 (394)
T ss_dssp             CCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-EC------SCTTTTCTTCCEEEE
T ss_pred             ecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-ee------ccccccccccceecc
Confidence            76654322  2233344567888887643 33344567788889999988766432 21      235777888888877


Q ss_pred             cCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccC
Q 043347          265 AENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEG  344 (385)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  344 (385)
                      ....+.    ......+.+++.+.+..+ +......+|.+|.+|+.+++.++ +......+|.+|.+|+.+.+..+ ++.
T Consensus       284 ~~~~i~----~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~  356 (394)
T 4fs7_A          284 GSVIVP----EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK  356 (394)
T ss_dssp             CSSEEC----TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE
T ss_pred             Cceeec----cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE
Confidence            654332    222233378888888754 44345667889999999999754 54455678899999999999877 665


Q ss_pred             CChhhhhcCCCccEEEccCCcccccCCCcccccccCccc
Q 043347          345 PIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRIL  383 (385)
Q Consensus       345 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l  383 (385)
                      ....+|..|++|+++++.++ +. .+..+|.+|++|+.+
T Consensus       357 I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          357 IGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             ECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             ehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            77788999999999999754 32 335679999999876

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.70  E-value=2.2e-16  Score=146.88  Aligned_cols=179  Identities=27%  Similarity=0.362  Sum_probs=109.1

Q ss_pred             ceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEE
Q 043347           32 SISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLY  111 (385)
Q Consensus        32 ~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  111 (385)
                      ++. .|+++++.++ .+|..++   ++|++|++++|.+. .++   ..+++|++|++++|.+.+ +|. +..  +|++|+
T Consensus        60 ~L~-~L~Ls~n~L~-~lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           60 QFS-ELQLNRLNLS-SLPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD  126 (571)
T ss_dssp             TCS-EEECCSSCCS-CCCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred             Ccc-EEEeCCCCCC-ccCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence            444 5666666666 4555442   55666666666665 333   335666666666666653 444 433  666666


Q ss_pred             eecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEcccccc
Q 043347          112 LSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNF  191 (385)
Q Consensus       112 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  191 (385)
                      +++|.+.+ +|.   .+++|+.|++++|.++. ++.   .+++|+.|++++|.+.+ +|.   +.  ++|+.|++++|.+
T Consensus       127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~---l~--~~L~~L~Ls~N~L  192 (571)
T 3cvr_A          127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE---LP--ESLEALDVSTNLL  192 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CC--TTCCEEECCSSCC
T ss_pred             CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch---hh--CCCCEEECcCCCC
Confidence            66666653 443   45666666666666654 232   45667777777766654 333   22  6677777777766


Q ss_pred             CCCCCcccccCCcc-------cEEEccCccccccCcccccCCCCccEEEecCCccccc
Q 043347          192 SGSIPSFFFNASKL-------YYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSS  242 (385)
Q Consensus       192 ~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  242 (385)
                      +. ++. +..  +|       +.|++++|.++. ++..+..+++|+.|++++|.++..
T Consensus       193 ~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          193 ES-LPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             SS-CCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHH
T ss_pred             Cc-hhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCc
Confidence            63 222 332  55       888888888875 455566688899999999888764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=6.8e-16  Score=127.81  Aligned_cols=133  Identities=26%  Similarity=0.228  Sum_probs=65.4

Q ss_pred             CCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEc
Q 043347           81 KELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSL  160 (385)
Q Consensus        81 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l  160 (385)
                      ++|++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|+.|++++|.++...+..+..+++|+.|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            45555555555555444444555555555555555554333333445555555555555554444444445555555555


Q ss_pred             cCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCcccc
Q 043347          161 LNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFS  216 (385)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  216 (385)
                      ++|.+. .+|..  +..+++|+.|++++|.+.......+..+++|+.|++++|.+.
T Consensus       120 s~N~l~-~lp~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          120 CCNKLT-ELPRG--IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CSSCCC-SCCTT--GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             cCCccc-ccCcc--cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            555544 22222  334455555555555554443444445555555555555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.68  E-value=3.4e-16  Score=138.97  Aligned_cols=177  Identities=24%  Similarity=0.194  Sum_probs=146.2

Q ss_pred             cEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCcc-CcccccEEEeecccccCCCCcccCCCcCCcEEEecc
Q 043347           60 KGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLG-NSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQ  138 (385)
Q Consensus        60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  138 (385)
                      +.++++++.+. .++..+.  +.++.|++++|.+....+..+. .+++|++|++++|.+....+..|..+++|+.|++++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            67889888887 4454443  4689999999999876666777 899999999999999877777899999999999999


Q ss_pred             cccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCccc---ccCCcccEEEccCccc
Q 043347          139 NNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFF---FNASKLYYLELAYNSF  215 (385)
Q Consensus       139 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~  215 (385)
                      |.+....+..+..+++|+.|++++|.+....+..  +..+++|+.|++++|.+.......+   ..+++|+.|++++|.+
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~--~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA--FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT--TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHH--hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            9998777778899999999999999987654433  7789999999999999986555555   5689999999999999


Q ss_pred             cccCcccccCCCC--ccEEEecCCcccc
Q 043347          216 SGLIPKALGQLRN--LERLGLQSNYLTS  241 (385)
Q Consensus       216 ~~~~~~~~~~~~~--L~~L~l~~~~~~~  241 (385)
                      .......+..++.  ++.|++++|.+..
T Consensus       176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          176 KKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CccCHHHhhhccHhhcceEEecCCCccC
Confidence            8766667777776  4889999998765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=1.6e-16  Score=134.45  Aligned_cols=151  Identities=19%  Similarity=0.238  Sum_probs=85.6

Q ss_pred             cccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCccc
Q 043347          199 FFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIG  278 (385)
Q Consensus       199 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  278 (385)
                      +..+++|++|++++|.+... + .+..+++|+.|++++|.+++.+        .+..+++|+.|++++|.+.+..+. ..
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~--------~l~~l~~L~~L~L~~N~l~~l~~~-~~  105 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLS--------PLKDLTKLEELSVNRNRLKNLNGI-PS  105 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--------GGTTCSSCCEEECCSSCCSCCTTC-CC
T ss_pred             hhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCCh--------hhccCCCCCEEECCCCccCCcCcc-cc
Confidence            44455555555555555432 1 3455556666666665555432        145555666666666655542211 11


Q ss_pred             ccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccE
Q 043347          279 NLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYK  358 (385)
Q Consensus       279 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  358 (385)
                         ++++.|++++|++.+.  ..+..+++|+.|++++|.+++. + .+..+++|+.|++++|++++.  ..+..+++|+.
T Consensus       106 ---~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~  176 (263)
T 1xeu_A          106 ---ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNW  176 (263)
T ss_dssp             ---SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred             ---CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence               4566666666666542  2356666777777777766632 2 456666777777777766644  44556667777


Q ss_pred             EEccCCccccc
Q 043347          359 FYLNRNKLSGS  369 (385)
Q Consensus       359 L~l~~~~~~~~  369 (385)
                      |++++|+++..
T Consensus       177 L~l~~N~~~~~  187 (263)
T 1xeu_A          177 IDLTGQKCVNE  187 (263)
T ss_dssp             EEEEEEEEECC
T ss_pred             EeCCCCcccCC
Confidence            77777666543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=5.2e-16  Score=136.02  Aligned_cols=229  Identities=16%  Similarity=0.151  Sum_probs=107.8

Q ss_pred             CChhhhcC--------CCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeeccc---
Q 043347           48 FPDDMCEG--------LPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNN---  116 (385)
Q Consensus        48 ~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~---  116 (385)
                      +|..+|..        +++|+.+++++ .++.....+|..|++|+.++++.+.+....+..|.++.++.++......   
T Consensus        84 I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~  162 (329)
T 3sb4_A           84 VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR  162 (329)
T ss_dssp             ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH
T ss_pred             cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh
Confidence            45555555        66666666666 5555555566666666666666666554455556555555555443311   


Q ss_pred             -ccCCCCcccCCCcCCc-EEEecccc-cccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCC
Q 043347          117 -LIGEIPQEIGSLRNLE-ILRIDQNN-LVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSG  193 (385)
Q Consensus       117 -~~~~~~~~~~~l~~L~-~L~l~~~~-~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  193 (385)
                       .......+|..+..|+ .+.+.... +.......-....++..+.+.+.-.....  ......+++|+.+++..+.++.
T Consensus       163 ~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~--~~l~~~~~~L~~l~L~~n~i~~  240 (329)
T 3sb4_A          163 FKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADF--KLIRDYMPNLVSLDISKTNATT  240 (329)
T ss_dssp             TSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHH--HHHHHHCTTCCEEECTTBCCCE
T ss_pred             ccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHH--HHHHHhcCCCeEEECCCCCcce
Confidence             1111222333444444 22222111 00000000001122223322221110000  0001124566666666655555


Q ss_pred             CCCcccccCCcccEEEccCccccccCcccccCCCCcc-EEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCC
Q 043347          194 SIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLE-RLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGV  272 (385)
Q Consensus       194 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  272 (385)
                      .....|..|.+|+++++.+| +......+|..+++|+ .+.+.+ .++..+.      .+|..|++|+.+++.++.+...
T Consensus       241 I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~------~aF~~c~~L~~l~l~~n~i~~I  312 (329)
T 3sb4_A          241 IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF------GAFMGCDNLRYVLATGDKITTL  312 (329)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT------TTTTTCTTEEEEEECSSCCCEE
T ss_pred             ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch------hhhhCCccCCEEEeCCCccCcc
Confidence            55555666666666666655 4444555666666666 666655 3443322      3566666666666666655544


Q ss_pred             CCCcccccccceeEEE
Q 043347          273 LPSSIGNLSVSVEEIY  288 (385)
Q Consensus       273 ~~~~~~~~~~~l~~L~  288 (385)
                      .+..+... ++|+.+.
T Consensus       313 ~~~aF~~~-~~L~~ly  327 (329)
T 3sb4_A          313 GDELFGNG-VPSKLIY  327 (329)
T ss_dssp             CTTTTCTT-CCCCEEE
T ss_pred             chhhhcCC-cchhhhc
Confidence            44444433 4555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=2.4e-16  Score=133.37  Aligned_cols=163  Identities=23%  Similarity=0.262  Sum_probs=83.1

Q ss_pred             eEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeeccc
Q 043347           37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNN  116 (385)
Q Consensus        37 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  116 (385)
                      ++++++.++ .++  .+..+++|++|++++|.+.. .+ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.
T Consensus        24 l~l~~~~i~-~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           24 QNLGKQSVT-DLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNR   96 (263)
T ss_dssp             HHHTCSCTT-SEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSC
T ss_pred             HHhcCCCcc-ccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCc
Confidence            555555554 333  12245555555555555542 22 455555555555555555422 22 5555555555555555


Q ss_pred             ccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCC
Q 043347          117 LIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIP  196 (385)
Q Consensus       117 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  196 (385)
                      +.+ ++. +.. ++|+.|++++|.++..  ..+..+++|+.|++++|.+.+. +   .+..+++|+.|++++|.+.+.  
T Consensus        97 l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~---~l~~l~~L~~L~L~~N~i~~~--  165 (263)
T 1xeu_A           97 LKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V---MLGFLSKLEVLDLHGNEITNT--  165 (263)
T ss_dssp             CSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G---GGGGCTTCCEEECTTSCCCBC--
T ss_pred             cCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h---HHccCCCCCEEECCCCcCcch--
Confidence            542 222 112 5555555555555432  2355555566666655555432 1   244555666666666655533  


Q ss_pred             cccccCCcccEEEccCccccc
Q 043347          197 SFFFNASKLYYLELAYNSFSG  217 (385)
Q Consensus       197 ~~~~~~~~L~~L~l~~~~~~~  217 (385)
                      ..+..+++|+.|++++|.+..
T Consensus       166 ~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          166 GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             TTSTTCCCCCEEEEEEEEEEC
T ss_pred             HHhccCCCCCEEeCCCCcccC
Confidence            445555666666666665543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.64  E-value=1.9e-14  Score=128.87  Aligned_cols=260  Identities=13%  Similarity=0.141  Sum_probs=160.3

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN  115 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  115 (385)
                      .+.+.+. ++ .++..+|..+ +|+.+.+..+ ++.....+|..+ +|+.+.+.. .+......+|.++++|+.+++.++
T Consensus       117 ~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n  190 (401)
T 4fdw_A          117 EIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT  190 (401)
T ss_dssp             EEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS
T ss_pred             EEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC
Confidence            4555543 44 5666666554 6777777655 554555666664 577777765 444445566777777777777776


Q ss_pred             cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC
Q 043347          116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI  195 (385)
Q Consensus       116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  195 (385)
                      .+......+|. +.+|+.+.+..+ +.......|.++++|+.+.+..+ +. .++. .+|.. .+|+.+.+. +.+....
T Consensus       191 ~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~-~aF~~-~~L~~i~lp-~~i~~I~  263 (401)
T 4fdw_A          191 KITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQ-EAFRE-SGITTVKLP-NGVTNIA  263 (401)
T ss_dssp             CCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECT-TTTTT-CCCSEEEEE-TTCCEEC
T ss_pred             cceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Cccc-ccccc-CCccEEEeC-CCccEEC
Confidence            66644444444 567777777643 55555666777777777777653 22 1222 22544 567777773 3344344


Q ss_pred             CcccccCCcccEEEccCcccc-----ccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCC
Q 043347          196 PSFFFNASKLYYLELAYNSFS-----GLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVD  270 (385)
Q Consensus       196 ~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  270 (385)
                      ...|..|++|+.+.+.++...     ......|..+++|+.+.+.+ .+...+.      .+|..|++|+.+.+..+ +.
T Consensus       264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~------~aF~~c~~L~~l~lp~~-l~  335 (401)
T 4fdw_A          264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQ------GLLGGNRKVTQLTIPAN-VT  335 (401)
T ss_dssp             TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECT------TTTTTCCSCCEEEECTT-CC
T ss_pred             hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhh------hhhcCCCCccEEEECcc-cc
Confidence            566777777777777665543     34456677777888887774 3444432      46777778888877544 44


Q ss_pred             CCCCCcccccccceeEEEeeccccCCCCCccccCCC-CccEEECcCccc
Q 043347          271 GVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLI-NLTKLSLGYNNL  318 (385)
Q Consensus       271 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~  318 (385)
                      ......+...  +|+.+.+.++.........|.+++ +++.|.+..+.+
T Consensus       336 ~I~~~aF~~~--~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          336 QINFSAFNNT--GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             EECTTSSSSS--CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EEcHHhCCCC--CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            3333333333  788888887777665666666664 677787776544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.64  E-value=1.1e-14  Score=130.82  Aligned_cols=316  Identities=13%  Similarity=0.080  Sum_probs=222.3

Q ss_pred             ccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCC
Q 043347           43 SLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP  122 (385)
Q Consensus        43 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  122 (385)
                      .++ .+...+|.++.+|+.+.+..+ ++.....+|.+|.+|+.+++..+ +......++.++..|+.+.+..+ +.....
T Consensus        58 ~Vt-sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~  133 (394)
T 4fs7_A           58 DVV-SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV  133 (394)
T ss_dssp             EEE-EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred             eEe-EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence            455 788899999999999999754 66677889999999999999765 44455568889999998877553 333445


Q ss_pred             cccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccC
Q 043347          123 QEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNA  202 (385)
Q Consensus       123 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  202 (385)
                      .+|..+..++......  ........|..+++|+.+.+..+...  ++. ..|..+.+|+.+.+..+ +.......+..+
T Consensus       134 ~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~~--I~~-~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~  207 (394)
T 4fs7_A          134 EAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSMET--LHN-GLFSGCGKLKSIKLPRN-LKIIRDYCFAEC  207 (394)
T ss_dssp             TTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCE--ECT-TTTTTCTTCCBCCCCTT-CCEECTTTTTTC
T ss_pred             eeeecccccccccCcc--ccccchhhhcccCCCcEEecCCccce--ecc-ccccCCCCceEEEcCCC-ceEeCchhhccc
Confidence            5666665444333222  23345567889999999999765322  222 34888999999988765 333455677888


Q ss_pred             CcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCccccccc
Q 043347          203 SKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSV  282 (385)
Q Consensus       203 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  282 (385)
                      ..|+.+.+..+...  ..........|+.+.+.... ...+      ..++..+..++.+.+..+... .....+.. +.
T Consensus       208 ~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~------~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~-~~  276 (394)
T 4fs7_A          208 ILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELG------KSVFYGCTDLESISIQNNKLR-IGGSLFYN-CS  276 (394)
T ss_dssp             TTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEEC------SSTTTTCSSCCEEEECCTTCE-ECSCTTTT-CT
T ss_pred             cccceeecCCCceE--eehhhcccCCCceEEECCCc-eecc------cccccccccceeEEcCCCcce-eecccccc-cc
Confidence            89998888765332  12233455788999887542 2222      146778899999998765332 22222322 36


Q ss_pred             ceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEcc
Q 043347          283 SVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLN  362 (385)
Q Consensus       283 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  362 (385)
                      .++.+......+   ...++..+.+|+.+.+.++ +......+|.+|.+|+.+++.++ ++.....+|..|.+|+.+.+.
T Consensus       277 ~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp  351 (394)
T 4fs7_A          277 GLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFP  351 (394)
T ss_dssp             TCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCC
T ss_pred             ccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEEC
Confidence            677776665433   2345778899999999765 44355668899999999999755 555677889999999999998


Q ss_pred             CCcccccCCCcccccccCccccC
Q 043347          363 RNKLSGSIPSCLGDLNSLRILSL  385 (385)
Q Consensus       363 ~~~~~~~~~~~~~~l~~L~~l~i  385 (385)
                      .+ ++.+...+|.+|.+|+.+.+
T Consensus       352 ~~-l~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          352 LS-LRKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             TT-CCEECTTTBTTCTTCCEEEE
T ss_pred             cc-ccEehHHHhhCCCCCCEEEE
Confidence            66 77778899999999998753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=2.4e-17  Score=154.17  Aligned_cols=202  Identities=18%  Similarity=0.168  Sum_probs=152.1

Q ss_pred             CCCCCCceEEccccccCCCCCcccccCCcccEEEccCcc-------------ccccCcccccCCCCccEEE-ecCCcccc
Q 043347          176 IGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNS-------------FSGLIPKALGQLRNLERLG-LQSNYLTS  241 (385)
Q Consensus       176 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~  241 (385)
                      ...+.|+.|+++.+.+. ..+..++.+++|+.|++++|.             .....+..++.+++|+.|+ ++.+.+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            45677888888888776 456777788888888876653             2333455667778888887 56554443


Q ss_pred             cchhhhh--hhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCcccc
Q 043347          242 STSELMS--LFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLS  319 (385)
Q Consensus       242 ~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  319 (385)
                      .......  .+..+. ...|+.|++++|.+.+ .|. +..+ ++|+.|++++|.+. .+|..++.+++|+.|++++|.++
T Consensus       425 L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~-lp~-~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  499 (567)
T 1dce_A          425 LRSKFLLENSVLKME-YADVRVLHLAHKDLTV-LCH-LEQL-LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE  499 (567)
T ss_dssp             HHHHHHHHHHHHHHH-HTTCSEEECTTSCCSS-CCC-GGGG-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             hhhhhhhcccccccC-ccCceEEEecCCCCCC-CcC-cccc-ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence            3221100  011111 2369999999999986 454 6666 79999999999998 67888999999999999999999


Q ss_pred             CCCccccccCCCCCeEeccCCcccCCC-hhhhhcCCCccEEEccCCcccccCCCc---ccccccCccccC
Q 043347          320 GSLPITLGRLKKLQGLDLQNNKFEGPI-PHEFCHFSRLYKFYLNRNKLSGSIPSC---LGDLNSLRILSL  385 (385)
Q Consensus       320 ~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~l~i  385 (385)
                      + +| .+..+++|+.|++++|++++.. |..+..+++|+.|++++|++++..+..   +..+++|+.|++
T Consensus       500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            5 66 7899999999999999999776 899999999999999999998765532   234788887753

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.62  E-value=2.5e-14  Score=128.07  Aligned_cols=265  Identities=18%  Similarity=0.186  Sum_probs=198.7

Q ss_pred             cCcccEEEecCccccCCCCc-ccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCc
Q 043347            6 LAELEVLVLNNNLLTGTIPA-SIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELS   84 (385)
Q Consensus         6 ~~~l~~L~l~~~~~~~~~~~-~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~   84 (385)
                      +..++++.+.+. ++ .++. ++.+ .++. .+.+.++ ++ .++..+|.++ +|+.+.+.. .+......+|..|++|+
T Consensus       112 ~~~l~~i~ip~~-i~-~I~~~aF~~-~~L~-~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          112 LKGYNEIILPNS-VK-SIPKDAFRN-SQIA-KVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK  183 (401)
T ss_dssp             CSSCSEEECCTT-CC-EECTTTTTT-CCCS-EEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred             cCCccEEEECCc-cC-EehHhhccc-CCcc-EEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence            466777777764 33 3333 3444 4666 7888776 66 7888888775 799999986 56667778999999999


Q ss_pred             EEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCc
Q 043347           85 RVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNT  164 (385)
Q Consensus        85 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~  164 (385)
                      .+++..+.+.......|. ...|+.+.+..+ +......+|..+++|+.+.+..+ ++......|.. .+|+.+.+..+ 
T Consensus       184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-  258 (401)
T 4fdw_A          184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-  258 (401)
T ss_dssp             EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-
T ss_pred             eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-
Confidence            999998888754445565 689999999754 55566778999999999999864 55556666766 78999998653 


Q ss_pred             ccccCCCCcccCCCCCCceEEccccccC-----CCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcc
Q 043347          165 LSGNLPSSKKLIGLPNLEGLILGLNNFS-----GSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYL  239 (385)
Q Consensus       165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  239 (385)
                      +... + ..+|..+++|+.+.+.++...     ......|..|++|+.+.+.. .+......+|..+++|+.+.+..+ +
T Consensus       259 i~~I-~-~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l  334 (401)
T 4fdw_A          259 VTNI-A-SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-V  334 (401)
T ss_dssp             CCEE-C-TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred             ccEE-C-hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-c
Confidence            3322 2 234889999999999877553     34567889999999999984 476677788999999999999665 5


Q ss_pred             cccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeecccc
Q 043347          240 TSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNI  294 (385)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~  294 (385)
                      .....      .+|..+ +|+.+.+.++.........+...+.+++.|.+..+..
T Consensus       335 ~~I~~------~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          335 TQINF------SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CEECT------TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             cEEcH------HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            54432      578888 9999999999877666666666656788998887654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=1.7e-15  Score=116.63  Aligned_cols=127  Identities=20%  Similarity=0.222  Sum_probs=87.4

Q ss_pred             ccCceEEEccCCCCC-CCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCe
Q 043347          256 CKSLKVIVLAENPVD-GVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQG  334 (385)
Q Consensus       256 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  334 (385)
                      .++++.|++++|.+. +..|..+..+ ++++.|++++|.+.+.  ..++.+++|+.|++++|.+.+.++..+..+++|+.
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEF-EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTC-TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhc-CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            355666666666665 4445444444 6677777777766644  55677778888888888887656766667888888


Q ss_pred             EeccCCcccCC-ChhhhhcCCCccEEEccCCcccccCC---CcccccccCccccC
Q 043347          335 LDLQNNKFEGP-IPHEFCHFSRLYKFYLNRNKLSGSIP---SCLGDLNSLRILSL  385 (385)
Q Consensus       335 L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~l~i  385 (385)
                      |++++|++++. .+..+..+++|++|++++|++++..+   ..+..+++|+.|++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            88888887742 23667778888888888888876554   45677777777764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=7.3e-15  Score=118.08  Aligned_cols=127  Identities=20%  Similarity=0.292  Sum_probs=78.8

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCC-CccCCCCCcEEecccccccccCCCCccCcccccEEEeec
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPN-NLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSF  114 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  114 (385)
                      .++++++.++ .+|..+.   +++++|++++|.+.+..+. .|..+++|++|++++|.+.+..|..+.++++|++|++++
T Consensus        12 ~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           12 TVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            5666666665 5665443   2566666666666544432 356666666666666666655556666666666666666


Q ss_pred             ccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCccc
Q 043347          115 NNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLS  166 (385)
Q Consensus       115 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~  166 (385)
                      |.+.+..+..+..+++|+.|++++|.++...+..+..+++|+.+++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            6666555555666666666666666666555666666666666666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=1.2e-14  Score=116.80  Aligned_cols=128  Identities=22%  Similarity=0.239  Sum_probs=97.2

Q ss_pred             cEEEecCccccCCCCcccccccceeceeEeecCccccCCCh-hhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEec
Q 043347           10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPD-DMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSL   88 (385)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l   88 (385)
                      ++++++++.++ .+|..+..  .++ +|++++|.++ .++. .++..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~-~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTT-ELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCS-EEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCC-EEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            67788888776 67765543  555 6888888887 4443 45567888888888888887777777888888888888


Q ss_pred             ccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccc
Q 043347           89 SFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLV  142 (385)
Q Consensus        89 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  142 (385)
                      ++|.+.+..+..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            888887666666778888888888888887777777888888888888887765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=7.1e-15  Score=115.60  Aligned_cols=128  Identities=18%  Similarity=0.097  Sum_probs=73.8

Q ss_pred             eeEeecCccc-cCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeec
Q 043347           36 GLDFSNNSLT-GSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSF  114 (385)
Q Consensus        36 ~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  114 (385)
                      .|++++|.++ +.+|.. +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus        28 ~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  104 (168)
T 2ell_A           28 ELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG  104 (168)
T ss_dssp             EEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS
T ss_pred             EEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC
Confidence            5666666555 344443 23556666666666665533  4556666666666666666544444455566666666666


Q ss_pred             ccccCCC-CcccCCCcCCcEEEecccccccccC---ccccCCCCCcEEEccCCccc
Q 043347          115 NNLIGEI-PQEIGSLRNLEILRIDQNNLVGFIP---DTIFNMSTLKTLSLLNNTLS  166 (385)
Q Consensus       115 ~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~l~l~~~~~~  166 (385)
                      |.+.+.. +..+..+++|+.|++++|.+....+   ..+..+++|+.|++++|...
T Consensus       105 N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          105 NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            6655321 1456666666666666666654333   34556666666666666544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=8.8e-15  Score=115.04  Aligned_cols=134  Identities=19%  Similarity=0.136  Sum_probs=111.0

Q ss_pred             CCCCccEEEecCCccc--ccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccc
Q 043347          225 QLRNLERLGLQSNYLT--SSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI  302 (385)
Q Consensus       225 ~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~  302 (385)
                      .+++|+.|++++|.+.  ..       ...+..+++|+.|++++|.+.+.  ..+..+ +++++|++++|++.+..+..+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i-------~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l-~~L~~L~Ls~N~l~~~~~~~~   91 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKI-------EGLTAEFVNLEFLSLINVGLISV--SNLPKL-PKLKKLELSENRIFGGLDMLA   91 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBC-------SSCCGGGGGCCEEEEESSCCCCC--SSCCCC-SSCCEEEEESCCCCSCCCHHH
T ss_pred             CcccCCEEECCCCCCChhhH-------HHHHHhCCCCCEEeCcCCCCCCh--hhhccC-CCCCEEECcCCcCchHHHHHH
Confidence            4588999999999887  33       23467889999999999998865  555555 799999999999987777777


Q ss_pred             cCCCCccEEECcCccccCCC-ccccccCCCCCeEeccCCcccCCCh---hhhhcCCCccEEEccCCcccc
Q 043347          303 GNLINLTKLSLGYNNLSGSL-PITLGRLKKLQGLDLQNNKFEGPIP---HEFCHFSRLYKFYLNRNKLSG  368 (385)
Q Consensus       303 ~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~  368 (385)
                      ..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+++..+   ..+..+++|+.|++++|.+..
T Consensus        92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            77999999999999998532 2678889999999999999986555   478889999999999998863

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=2.8e-17  Score=153.64  Aligned_cols=102  Identities=24%  Similarity=0.348  Sum_probs=45.7

Q ss_pred             ccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEc
Q 043347          107 LKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLIL  186 (385)
Q Consensus       107 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l  186 (385)
                      |++|++++|.+.+ +|. ++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+ +|   .+..+++|+.|++
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp---~l~~l~~L~~L~L  515 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD---GVANLPRLQELLL  515 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG---GGTTCSSCCEEEC
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc---ccCCCCCCcEEEC
Confidence            5555555555542 333 555555555555555554 334445555555555555554442 22   1333444444444


Q ss_pred             cccccCCCC-CcccccCCcccEEEccCccc
Q 043347          187 GLNNFSGSI-PSFFFNASKLYYLELAYNSF  215 (385)
Q Consensus       187 ~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~  215 (385)
                      ++|.+++.. +..+..+++|+.|++++|.+
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence            444433322 33333344444444444433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=5.8e-14  Score=112.76  Aligned_cols=126  Identities=27%  Similarity=0.383  Sum_probs=82.1

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN  115 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  115 (385)
                      .++++++.++ .+|..+.   ++|++|++++|.+. .++..|..+++|++|++++|.+....+..+.++++|++|++++|
T Consensus        14 ~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             EEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            5666666666 6665442   46667777776665 44456666677777777777666555556666777777777777


Q ss_pred             cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCccc
Q 043347          116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLS  166 (385)
Q Consensus       116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~  166 (385)
                      .+....+..|..+++|+.|++++|.++...+..+..+++|+.+++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            666555556666777777777777766555555666777777777766553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=4.2e-14  Score=113.59  Aligned_cols=127  Identities=23%  Similarity=0.259  Sum_probs=93.6

Q ss_pred             cEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecc
Q 043347           10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLS   89 (385)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~   89 (385)
                      +.++++++.++ .+|..+.  +.++ +|++++|.++ .+|. .+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~-~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVT-ELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCC-EEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCC-EEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            56777777776 6666543  3455 6888888887 7774 44578888888888888876666777888888888888


Q ss_pred             cccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccc
Q 043347           90 FNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLV  142 (385)
Q Consensus        90 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  142 (385)
                      +|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+.
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            88877666667778888888888888877555556777888888888877654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=1.4e-13  Score=109.16  Aligned_cols=126  Identities=23%  Similarity=0.247  Sum_probs=73.1

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN  115 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  115 (385)
                      .+++++++++ .+|..+   .++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus        11 ~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           11 EIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             EEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            4666666666 555443   245666666666666554555566666666666666665443344566666666666666


Q ss_pred             cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcc
Q 043347          116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTL  165 (385)
Q Consensus       116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~  165 (385)
                      .+.+..+..+..+++|+.|++++|.++...+..+..+++|+++++++|.+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            66544444455666666666666665544333445555566666555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=3.1e-14  Score=109.51  Aligned_cols=107  Identities=17%  Similarity=0.179  Sum_probs=72.1

Q ss_pred             hcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCC-CccccccCCCC
Q 043347          254 VNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGS-LPITLGRLKKL  332 (385)
Q Consensus       254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L  332 (385)
                      ..+++|+.|++++|.+.+.  ..+..+ +++++|++++|.+.+..|..+..+++|++|++++|.+++. .+..+..+++|
T Consensus        39 ~~l~~L~~L~l~~n~l~~~--~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L  115 (149)
T 2je0_A           39 DEFEELEFLSTINVGLTSI--ANLPKL-NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL  115 (149)
T ss_dssp             TTCTTCCEEECTTSCCCCC--TTCCCC-TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred             hhcCCCcEEECcCCCCCCc--hhhhcC-CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence            3344444444444444433  223333 5666666666666655666666788899999999888753 33677888999


Q ss_pred             CeEeccCCcccCCCh---hhhhcCCCccEEEccC
Q 043347          333 QGLDLQNNKFEGPIP---HEFCHFSRLYKFYLNR  363 (385)
Q Consensus       333 ~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~  363 (385)
                      +.|++++|.+++..+   ..+..+++|+.|++++
T Consensus       116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999998886555   4677889999988764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.52  E-value=1.6e-13  Score=108.78  Aligned_cols=131  Identities=24%  Similarity=0.220  Sum_probs=112.3

Q ss_pred             cccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEe
Q 043347            8 ELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVS   87 (385)
Q Consensus         8 ~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~   87 (385)
                      +.+.++++++.++ .+|..+.  ++++ .|+++++.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus         8 ~~~~l~~~~~~l~-~~p~~~~--~~l~-~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   82 (177)
T 2o6r_A            8 SGTEIRCNSKGLT-SVPTGIP--SSAT-RLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY   82 (177)
T ss_dssp             ETTEEECCSSCCS-SCCTTCC--TTCS-EEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEecCCCCc-cCCCCCC--CCCc-EEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence            4578999999987 6776543  5666 8999999999 78888777899999999999999877777789999999999


Q ss_pred             cccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEeccccccc
Q 043347           88 LSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVG  143 (385)
Q Consensus        88 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  143 (385)
                      +++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus        83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            99999986666678899999999999999986655567889999999999998764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.49  E-value=9.1e-12  Score=111.80  Aligned_cols=315  Identities=11%  Similarity=0.114  Sum_probs=166.7

Q ss_pred             CCChhhhcCCC-cccEEEccCCcccCcCCCCccCCCCCcEEeccccc---ccccCCCCccCcccccEEEeecccccCCCC
Q 043347           47 SFPDDMCEGLP-RLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQ---FTGRIPRDLGNSTKLKLLYLSFNNLIGEIP  122 (385)
Q Consensus        47 ~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  122 (385)
                      .+++.+|..+. .|+.+.+..+ ++.....+|.+|.+|+.+.+..+.   +......+|.++..|+.+.+..+ +.....
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~  130 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS  130 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred             EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence            45566665553 4677777654 444556667777777777665542   33334455666666666655433 332344


Q ss_pred             cccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccC
Q 043347          123 QEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNA  202 (385)
Q Consensus       123 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  202 (385)
                      .+|..+.+|+.+.+... +.......+..+..|+.+.+..+- ... .. .+|. ...|+.+.+...-.. .....+..+
T Consensus       131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~-~~I-~~-~aF~-~~~l~~i~ip~~~~~-i~~~af~~c  204 (394)
T 4gt6_A          131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSV-TAI-EE-RAFT-GTALTQIHIPAKVTR-IGTNAFSEC  204 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTC-CEE-CT-TTTT-TCCCSEEEECTTCCE-ECTTTTTTC
T ss_pred             hhhhhhcccccccccce-eeeecccceeccccccccccccee-eEe-cc-cccc-ccceeEEEECCcccc-cccchhhhc
Confidence            45666667777666533 233444556666666666665432 111 11 1132 245666655433211 223344555


Q ss_pred             CcccEEEccCccccccCc-------------ccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCC
Q 043347          203 SKLYYLELAYNSFSGLIP-------------KALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPV  269 (385)
Q Consensus       203 ~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  269 (385)
                      ..+...............             ..+.....+..+.+... +....      ..+|..++.|+.+.+..+..
T Consensus       205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~------~~aF~~c~~L~~i~lp~~~~  277 (394)
T 4gt6_A          205 FALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIE------THAFDSCAYLASVKMPDSVV  277 (394)
T ss_dssp             TTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEEC------TTTTTTCSSCCEEECCTTCC
T ss_pred             cccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcc------cceeeecccccEEecccccc
Confidence            555555443322111000             00111222333333221 11111      13566777777777754322


Q ss_pred             CCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhh
Q 043347          270 DGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHE  349 (385)
Q Consensus       270 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  349 (385)
                       ......+.. +..|+.+.+.. .+......+|.+|.+|+.+.|.++ ++.....+|.+|.+|+.+.+..+ ++.....+
T Consensus       278 -~I~~~aF~~-c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~a  352 (394)
T 4gt6_A          278 -SIGTGAFMN-CPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESA  352 (394)
T ss_dssp             -EECTTTTTT-CTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGG
T ss_pred             -eecCccccc-ccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhH
Confidence             112222222 25677776653 333344567888888999888764 44345667888889999888655 55567778


Q ss_pred             hhcCCCccEEEccCCcccccCCCcccccccCcccc
Q 043347          350 FCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILS  384 (385)
Q Consensus       350 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~  384 (385)
                      |.+|++|+.+++.++...   ..++..+.+|+.+.
T Consensus       353 F~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~  384 (394)
T 4gt6_A          353 FSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLP  384 (394)
T ss_dssp             GTTCTTCCEEEESSCHHH---HHTCBCCCCC----
T ss_pred             hhCCCCCCEEEECCceee---hhhhhccCCCCEEE
Confidence            888899999998887543   23455666666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=8.4e-14  Score=110.26  Aligned_cols=134  Identities=18%  Similarity=0.143  Sum_probs=104.7

Q ss_pred             cccCCCCccEEEecCCcccccchhhhhhhHhhhcc-cCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCc
Q 043347          222 ALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNC-KSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPK  300 (385)
Q Consensus       222 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~  300 (385)
                      .+..+++|+.|++++|.+...+        .+..+ ++|+.|++++|.+.+.  ..+..+ +++++|++++|.+.+..+.
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~--------~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l-~~L~~L~Ls~N~l~~~~~~   82 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIE--------NLGATLDQFDAIDFSDNEIRKL--DGFPLL-RRLKTLLVNNNRICRIGEG   82 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCC--------CGGGGTTCCSEEECCSSCCCEE--CCCCCC-SSCCEEECCSSCCCEECSC
T ss_pred             hcCCcCCceEEEeeCCCCchhH--------HhhhcCCCCCEEECCCCCCCcc--cccccC-CCCCEEECCCCcccccCcc
Confidence            3567889999999999888642        23333 4899999999988865  445555 7899999999998865555


Q ss_pred             cccCCCCccEEECcCccccCCCcc--ccccCCCCCeEeccCCcccCCChh----hhhcCCCccEEEccCCcccc
Q 043347          301 EIGNLINLTKLSLGYNNLSGSLPI--TLGRLKKLQGLDLQNNKFEGPIPH----EFCHFSRLYKFYLNRNKLSG  368 (385)
Q Consensus       301 ~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~  368 (385)
                      .+..+++|++|++++|.+. .++.  .+..+++|+.|++++|.++. .+.    .+..+++|+.|++++|....
T Consensus        83 ~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           83 LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            5688899999999999986 4554  67888999999999998884 444    37789999999999887653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.48  E-value=9.4e-15  Score=140.87  Aligned_cols=115  Identities=28%  Similarity=0.345  Sum_probs=67.8

Q ss_pred             ChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCC
Q 043347           49 PDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSL  128 (385)
Q Consensus        49 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l  128 (385)
                      +.+.+..++.|+.|++++|.+. .++..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..++.+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            3444445666666666666655 44444456666666666666665 55666666666666666666665 556666666


Q ss_pred             cCCcEEEecccccccccCccccCCCCCcEEEccCCcccc
Q 043347          129 RNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSG  167 (385)
Q Consensus       129 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  167 (385)
                      ++|++|++++|.+. .+|..|..+++|+.|++++|.+.+
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence            66666666666665 345556666666666666666543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=1.4e-13  Score=108.89  Aligned_cols=134  Identities=15%  Similarity=0.181  Sum_probs=96.7

Q ss_pred             ccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcc
Q 043347          198 FFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSI  277 (385)
Q Consensus       198 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  277 (385)
                      .+..+.++++|++++|.+... +......++|+.|++++|.++..        ..+..+++|+.|++++|.+.+..+..+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--------~~l~~l~~L~~L~Ls~N~l~~~~~~~~   84 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--------DGFPLLRRLKTLLVNNNRICRIGEGLD   84 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--------CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred             hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--------cccccCCCCCEEECCCCcccccCcchh
Confidence            345677888888888887744 33223334888888888887753        356778888888888888876544433


Q ss_pred             cccccceeEEEeeccccCCCCCc--cccCCCCccEEECcCccccCCCcc----ccccCCCCCeEeccCCccc
Q 043347          278 GNLSVSVEEIYMYKCNIHGRIPK--EIGNLINLTKLSLGYNNLSGSLPI----TLGRLKKLQGLDLQNNKFE  343 (385)
Q Consensus       278 ~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~  343 (385)
                      ..+ +++++|++++|++.. ++.  .+..+++|+.|++++|.+. ..+.    .+..+++|+.|++++|...
T Consensus        85 ~~l-~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           85 QAL-PDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HHC-TTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             hcC-CCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            555 788888888888853 443  6777888888888888887 4444    3777888888888888665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.44  E-value=3.1e-14  Score=137.24  Aligned_cols=152  Identities=24%  Similarity=0.293  Sum_probs=77.5

Q ss_pred             CcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCC
Q 043347          196 PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS  275 (385)
Q Consensus       196 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  275 (385)
                      +..+..++.|+.|++++|.+.. .+..+..+++|+.|++++|.++.+       +..+..+++|+.|++++|.+. .+|.
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~~l-------p~~~~~l~~L~~L~Ls~N~l~-~lp~  287 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLTEL-------PAEIKNLSNLRVLDLSHNRLT-SLPA  287 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCSCC-------CGGGGGGTTCCEEECTTSCCS-SCCS
T ss_pred             hhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCccc-------ChhhhCCCCCCEEeCcCCcCC-ccCh
Confidence            4455556666666666666653 233334566666666666666533       234555666666666666666 4455


Q ss_pred             cccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCC-CCeEeccCCcccCCChhhhhcCC
Q 043347          276 SIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKK-LQGLDLQNNKFEGPIPHEFCHFS  354 (385)
Q Consensus       276 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~  354 (385)
                      .+..+ ++|++|++++|.+. .+|..++.+++|+.|+|++|.+.+..+..+..+.. ...+++++|.+++..|.      
T Consensus       288 ~~~~l-~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------  359 (727)
T 4b8c_D          288 ELGSC-FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------  359 (727)
T ss_dssp             SGGGG-TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------
T ss_pred             hhcCC-CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------
Confidence            55554 56666666666654 34545666666666666666666555554433221 12345566666554443      


Q ss_pred             CccEEEccCC
Q 043347          355 RLYKFYLNRN  364 (385)
Q Consensus       355 ~L~~L~l~~~  364 (385)
                      .|+.|+++.|
T Consensus       360 ~l~~l~l~~n  369 (727)
T 4b8c_D          360 ERRFIEINTD  369 (727)
T ss_dssp             C---------
T ss_pred             ccceeEeecc
Confidence            3344555555

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.42  E-value=3.9e-11  Score=107.67  Aligned_cols=316  Identities=9%  Similarity=0.121  Sum_probs=191.0

Q ss_pred             ccccccc-eeceeEeecCccccCCChhhhcCCCcccEEEccCCc---ccCcCCCCccCCCCCcEEecccccccccCCCCc
Q 043347           26 SIFNLSS-ISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQ---FKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDL  101 (385)
Q Consensus        26 ~~~~~~~-l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  101 (385)
                      ++.++.. ++ .+.+.+. ++ .+...+|.++.+|+.+.+..+.   ++.....+|..|.+|+.+.+..+ +.......+
T Consensus        58 aF~~~~~~L~-sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF  133 (394)
T 4gt6_A           58 VFCNYKYVLT-SVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF  133 (394)
T ss_dssp             TTTTCCSCCC-EEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred             hccCCCCcCE-EEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence            3445544 44 6787754 55 6778888888888888887653   55456677888888888777654 333445577


Q ss_pred             cCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCC
Q 043347          102 GNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL  181 (385)
Q Consensus       102 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L  181 (385)
                      ..+.+|+.+.+..+ +.......|..+..|+.+.+..+ ++......|. ...|+.+.+...... .  ...++..+..+
T Consensus       134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i--~~~af~~c~~l  207 (394)
T 4gt6_A          134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-I--GTNAFSECFAL  207 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-E--CTTTTTTCTTC
T ss_pred             hhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-c--ccchhhhcccc
Confidence            78888888888653 33345556778888888887654 3333344443 356888877654322 1  12235666777


Q ss_pred             ceEEccccccCCCCCccc-------------ccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhh
Q 043347          182 EGLILGLNNFSGSIPSFF-------------FNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMS  248 (385)
Q Consensus       182 ~~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  248 (385)
                      .................+             .....+..+.+.. .+......+|..+..|+.+.+..+... .+     
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~-----  280 (394)
T 4gt6_A          208 STITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IG-----  280 (394)
T ss_dssp             CEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-EC-----
T ss_pred             ceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ec-----
Confidence            766655443221111111             1122333444432 233344567788888888888765322 22     


Q ss_pred             hhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCcccccc
Q 043347          249 LFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGR  328 (385)
Q Consensus       249 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  328 (385)
                       ..+|..++.|+.+.+.. .+.......+ ..+.+|+++.+..+ +......+|.+|.+|+.+.|..+ ++.....+|.+
T Consensus       281 -~~aF~~c~~L~~i~l~~-~i~~I~~~aF-~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~  355 (394)
T 4gt6_A          281 -TGAFMNCPALQDIEFSS-RITELPESVF-AGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSN  355 (394)
T ss_dssp             -TTTTTTCTTCCEEECCT-TCCEECTTTT-TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTT
T ss_pred             -CcccccccccccccCCC-cccccCceee-cCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhC
Confidence             24677888888888863 3432323333 33378888888754 44345667899999999999755 55455678999


Q ss_pred             CCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcc
Q 043347          329 LKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKL  366 (385)
Q Consensus       329 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  366 (385)
                      |++|+.+++.++...   ...+..+.+|+.+.+..+.+
T Consensus       356 C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          356 CTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             CCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            999999999987543   23455678898888876544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=2.7e-15  Score=121.35  Aligned_cols=153  Identities=20%  Similarity=0.275  Sum_probs=96.4

Q ss_pred             cCCcccEEEccCccccccCcc------cccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCC
Q 043347          201 NASKLYYLELAYNSFSGLIPK------ALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLP  274 (385)
Q Consensus       201 ~~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  274 (385)
                      ....++.+++..+.+....+.      .+..+++|+.|++++|.+...+        .+..+++|+.|++++|.+. ..|
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--------~~~~l~~L~~L~l~~n~l~-~l~   86 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--------SLSGMENLRILSLGRNLIK-KIE   86 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--------CHHHHTTCCEEEEEEEEEC-SCS
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--------ccccCCCCCEEECCCCCcc-ccc
Confidence            344555555555555433333      6677778888888887776532        4566777888888877776 334


Q ss_pred             CcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCc-cccccCCCCCeEeccCCcccCCChh-----
Q 043347          275 SSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLP-ITLGRLKKLQGLDLQNNKFEGPIPH-----  348 (385)
Q Consensus       275 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~-----  348 (385)
                      ..+... ++++.|++++|++.+ .+ .+..+++|++|++++|.+.+... ..+..+++|+.|++++|.+.+..+.     
T Consensus        87 ~~~~~~-~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  163 (198)
T 1ds9_A           87 NLDAVA-DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS  163 (198)
T ss_dssp             SHHHHH-HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHH
T ss_pred             chhhcC-CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchH
Confidence            433333 677777777777764 33 46667777777777777763222 3566777777777777777543332     


Q ss_pred             -----hhhcCCCccEEEccCCccc
Q 043347          349 -----EFCHFSRLYKFYLNRNKLS  367 (385)
Q Consensus       349 -----~~~~~~~L~~L~l~~~~~~  367 (385)
                           .+..+++|+.|+  +++++
T Consensus       164 ~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          164 EYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             HHHHHHHHhCCCcEEEC--CcccC
Confidence                 255677777765  55554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.34  E-value=6.1e-12  Score=98.69  Aligned_cols=103  Identities=25%  Similarity=0.227  Sum_probs=69.3

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN  115 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  115 (385)
                      .++++++.++ .+|..+   .++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus        13 ~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           13 TVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             EEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            5777777777 666554   256777777777777666666777777777777777776444445667777777777777


Q ss_pred             cccCCCCcccCCCcCCcEEEecccccc
Q 043347          116 NLIGEIPQEIGSLRNLEILRIDQNNLV  142 (385)
Q Consensus       116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~  142 (385)
                      .+....+..+..+++|+.|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            766544445666777777777766654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=8.3e-12  Score=97.94  Aligned_cols=86  Identities=22%  Similarity=0.271  Sum_probs=40.5

Q ss_pred             cCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEe
Q 043347          257 KSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLD  336 (385)
Q Consensus       257 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  336 (385)
                      ++++.|++++|.+.+..+..+..+ ++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  108 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRL-TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW  108 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCcCCccChhhhcCc-ccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence            345555555555554444444433 4455555555544443444444444555555555544433333344444555555


Q ss_pred             ccCCccc
Q 043347          337 LQNNKFE  343 (385)
Q Consensus       337 l~~~~~~  343 (385)
                      +++|.+.
T Consensus       109 L~~N~~~  115 (170)
T 3g39_A          109 LLNNPWD  115 (170)
T ss_dssp             CCSSCBC
T ss_pred             eCCCCCC
Confidence            5554444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.32  E-value=6.3e-15  Score=119.19  Aligned_cols=154  Identities=24%  Similarity=0.305  Sum_probs=101.8

Q ss_pred             cceeceeEeecCccccCCCh-----hhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcc
Q 043347           31 SSISTGLDFSNNSLTGSFPD-----DMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNST  105 (385)
Q Consensus        31 ~~l~~~L~l~~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  105 (385)
                      ..+. .++++.+.+.+.+|.     ..+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+. .+|..+..++
T Consensus        18 ~~l~-~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           18 KSVV-ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             TCCC-CTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             cccc-CcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence            3444 455555555544443     133467888888888887774 34 7777888888888888777 5666666678


Q ss_pred             cccEEEeecccccCCCCcccCCCcCCcEEEecccccccccC-ccccCCCCCcEEEccCCcccccCCCC--------cccC
Q 043347          106 KLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIP-DTIFNMSTLKTLSLLNNTLSGNLPSS--------KKLI  176 (385)
Q Consensus       106 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~--------~~~~  176 (385)
                      +|++|++++|.+.+ ++ .+..+++|+.|++++|.+..... ..+..+++|+.+++++|.+....|..        ..+.
T Consensus        94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A           94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred             cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence            88888888887764 33 57777888888888887764322 45677888888888888775443221        1245


Q ss_pred             CCCCCceEEccccccC
Q 043347          177 GLPNLEGLILGLNNFS  192 (385)
Q Consensus       177 ~~~~L~~L~l~~~~~~  192 (385)
                      .+++|+.|+  ++.++
T Consensus       172 ~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          172 RLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HCSSCSEEC--CGGGT
T ss_pred             hCCCcEEEC--CcccC
Confidence            677888776  44443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=1.1e-11  Score=97.66  Aligned_cols=103  Identities=20%  Similarity=0.188  Sum_probs=74.7

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN  115 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  115 (385)
                      .+++++++++ .+|..+.   ++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+.++++|++|++++|
T Consensus        16 ~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           16 LVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            6788888877 7777553   67788888888877666777777888888888888777444445677778888888777


Q ss_pred             cccCCCCcccCCCcCCcEEEecccccc
Q 043347          116 NLIGEIPQEIGSLRNLEILRIDQNNLV  142 (385)
Q Consensus       116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~  142 (385)
                      .+....+..+..+++|+.|++++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            777444445777777777777777665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.29  E-value=7.7e-14  Score=123.65  Aligned_cols=66  Identities=26%  Similarity=0.211  Sum_probs=30.0

Q ss_pred             cCCCCccEEECcCccccCC----CccccccCCCCCeEeccCCcccCCChh----hhhcCCCccEEEccCCcccc
Q 043347          303 GNLINLTKLSLGYNNLSGS----LPITLGRLKKLQGLDLQNNKFEGPIPH----EFCHFSRLYKFYLNRNKLSG  368 (385)
Q Consensus       303 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~  368 (385)
                      ..+++|++|++++|.+.+.    +...+..+++|+.|++++|.+++....    .+...++|++|++++|+++.
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            3344555555555554421    123334444555555555555432221    22234555555555555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.28  E-value=7.7e-10  Score=98.74  Aligned_cols=286  Identities=12%  Similarity=0.055  Sum_probs=125.5

Q ss_pred             cceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEE
Q 043347           31 SSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLL  110 (385)
Q Consensus        31 ~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  110 (385)
                      .+++ .+.+.. .++ .+++.+|.+|.+|+.+.+..+ ++.....+|..+ +|+.+.+..+ +......++.. .+|+.+
T Consensus        46 ~~i~-~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i  118 (379)
T 4h09_A           46 DRIS-EVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDF  118 (379)
T ss_dssp             GGCS-EEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEE
T ss_pred             cCCE-EEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccc
Confidence            3444 466653 355 667777777777777777644 454556666666 4666655443 22223334444 367777


Q ss_pred             EeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCC----------CcccCCCCC
Q 043347          111 YLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPS----------SKKLIGLPN  180 (385)
Q Consensus       111 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~----------~~~~~~~~~  180 (385)
                      .+..+ +......+|..+ .++.+.+..+ ++......+..+..++.+.+...........          ...+.....
T Consensus       119 ~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (379)
T 4h09_A          119 EFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKT  195 (379)
T ss_dssp             ECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCC
T ss_pred             cCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccc
Confidence            76543 221223334433 4555544332 2333344555666666665543221100000          001122223


Q ss_pred             CceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCce
Q 043347          181 LEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLK  260 (385)
Q Consensus       181 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~  260 (385)
                      +..+.+...... .....+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++..+.      .++..+..|+
T Consensus       196 ~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~------~aF~~~~~l~  266 (379)
T 4h09_A          196 GTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS------FLLQNCTALK  266 (379)
T ss_dssp             CSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT------TTTTTCTTCC
T ss_pred             ccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc------cccceeehhc
Confidence            333332221111 12223344455555555432 22233344555556666655443 222211      2445555555


Q ss_pred             EEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEecc
Q 043347          261 VIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQ  338 (385)
Q Consensus       261 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  338 (385)
                      .+.+..+ +.......+. .+.+|+.+.+.++.+......+|.+|.+|+.+.|..+ +......+|.+|.+|+.+.+.
T Consensus       267 ~i~l~~~-i~~i~~~aF~-~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          267 TLNFYAK-VKTVPYLLCS-GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EEEECCC-CSEECTTTTT-TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccccc-ceeccccccc-cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            5555432 2211111111 1244555555444443333444445555555555432 222223344445555555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.28  E-value=2.6e-11  Score=95.46  Aligned_cols=105  Identities=21%  Similarity=0.241  Sum_probs=91.2

Q ss_pred             ccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEec
Q 043347            9 LEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSL   88 (385)
Q Consensus         9 l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l   88 (385)
                      -+.++++++.+. .+|..+.  .+++ .|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~-~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L   88 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQ-RLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL   88 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCS-EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCc-EEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence            378999999997 7888764  6666 8999999999 777777779999999999999999777777899999999999


Q ss_pred             ccccccccCCCCccCcccccEEEeeccccc
Q 043347           89 SFNQFTGRIPRDLGNSTKLKLLYLSFNNLI  118 (385)
Q Consensus        89 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  118 (385)
                      ++|.+....+..+..+++|++|++++|++.
T Consensus        89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            999998555556999999999999999886

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.18  E-value=3.3e-13  Score=119.58  Aligned_cols=136  Identities=18%  Similarity=0.141  Sum_probs=58.1

Q ss_pred             CcccEEEccCCcccCcCCCCc-cCCCCCcEEecccccccccCCCCc-----cCcccccEEEeecccccCC----CCcccC
Q 043347           57 PRLKGLYVSYNQFKGPIPNNL-WHCKELSRVSLSFNQFTGRIPRDL-----GNSTKLKLLYLSFNNLIGE----IPQEIG  126 (385)
Q Consensus        57 ~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~----~~~~~~  126 (385)
                      ++|++|++++|.+.......+ ..+++|+.|++++|.+.......+     ...+.|++|++++|.+++.    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            345555555554432211111 123345555555554432222121     1234555555555544321    222234


Q ss_pred             CCcCCcEEEeccccccccc----CccccCCCCCcEEEccCCcccccCCC--CcccCCCCCCceEEccccccC
Q 043347          127 SLRNLEILRIDQNNLVGFI----PDTIFNMSTLKTLSLLNNTLSGNLPS--SKKLIGLPNLEGLILGLNNFS  192 (385)
Q Consensus       127 ~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~l~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~  192 (385)
                      .+++|++|++++|.+.+..    ...+...++|++|++++|.+.+.-..  ...+...+.|++|++++|.+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            4555555555555544321    22334445555666655554321000  011223455666666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.13  E-value=1.4e-08  Score=90.61  Aligned_cols=304  Identities=12%  Similarity=0.065  Sum_probs=185.0

Q ss_pred             CCCcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCC
Q 043347            3 LGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKE   82 (385)
Q Consensus         3 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   82 (385)
                      +....+|+++.+... ++..-..++.+|.+++ .+++.++ ++ .++..+|..+ .|+.+.+..+ +......+|..+ +
T Consensus        42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~-~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~  114 (379)
T 4h09_A           42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMT-KVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D  114 (379)
T ss_dssp             GGGGGGCSEEEECTT-EEEECTTTTTTCTTCC-EEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred             cccccCCEEEEeCCC-ccChHHHHhhCCCCCC-EEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence            345567888888754 3322334577788888 6888754 66 7888888776 6788877654 444555566655 7


Q ss_pred             CcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccc------------cCcccc
Q 043347           83 LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGF------------IPDTIF  150 (385)
Q Consensus        83 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------~~~~~~  150 (385)
                      |+.+++..+... .....+.+. .++.+.+..+ +.......+..+.+++...+........            ....+.
T Consensus       115 L~~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (379)
T 4h09_A          115 LDDFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP  191 (379)
T ss_dssp             CSEEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred             cccccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence            888888765322 333445444 5666655443 3334455567777888777654332111            111223


Q ss_pred             CCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCcc
Q 043347          151 NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLE  230 (385)
Q Consensus       151 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  230 (385)
                      ....+..+.+...... .  ....+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++.....++..+.+|+
T Consensus       192 ~~~~~~~~~~~~~~~~-i--~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~  266 (379)
T 4h09_A          192 AAKTGTEFTIPSTVKT-V--TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK  266 (379)
T ss_dssp             TTCCCSEEECCTTCCE-E--CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred             ccccccccccccceeE-E--eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence            3445555554432211 1  1122556677777777544 22234456677888888888754 4445566777888888


Q ss_pred             EEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccE
Q 043347          231 RLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTK  310 (385)
Q Consensus       231 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~  310 (385)
                      .+.+..+ +...+      ..+|..|++|+.+.+.++.+.......+... .+|+.+.+..+ +......+|.+|.+|+.
T Consensus       267 ~i~l~~~-i~~i~------~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c-~~L~~i~lp~~-l~~I~~~aF~~C~~L~~  337 (379)
T 4h09_A          267 TLNFYAK-VKTVP------YLLCSGCSNLTKVVMDNSAIETLEPRVFMDC-VKLSSVTLPTA-LKTIQVYAFKNCKALST  337 (379)
T ss_dssp             EEEECCC-CSEEC------TTTTTTCTTCCEEEECCTTCCEECTTTTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred             ccccccc-ceecc------ccccccccccccccccccccceehhhhhcCC-CCCCEEEcCcc-ccEEHHHHhhCCCCCCE
Confidence            8888654 33332      2467888888888888776664444444443 78888888653 44345667889999999


Q ss_pred             EECcCccccCCCccccccCCC
Q 043347          311 LSLGYNNLSGSLPITLGRLKK  331 (385)
Q Consensus       311 L~l~~~~~~~~~~~~~~~~~~  331 (385)
                      +.+..+ ++..-..+|.+|+.
T Consensus       338 i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          338 ISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             CCCCTT-CCEECTTTTTTSSC
T ss_pred             EEECCc-cCEEchhHhhCCCC
Confidence            988654 33334556666643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.99  E-value=1.3e-09  Score=96.03  Aligned_cols=101  Identities=23%  Similarity=0.269  Sum_probs=44.2

Q ss_pred             EEecCc-cccCCCCcccccccceeceeEeec-CccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecc
Q 043347           12 LVLNNN-LLTGTIPASIFNLSSISTGLDFSN-NSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLS   89 (385)
Q Consensus        12 L~l~~~-~~~~~~~~~~~~~~~l~~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~   89 (385)
                      ++.+++ .+. .+|. +..+.+++ .|+|++ |.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~-~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLT-ELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCS-EEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCee-EEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            344444 443 3444 44444444 345543 4444 4444444444445555554444444444444444444444444


Q ss_pred             cccccccCCCCccCcccccEEEeecccc
Q 043347           90 FNQFTGRIPRDLGNSTKLKLLYLSFNNL  117 (385)
Q Consensus        90 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~  117 (385)
                      +|.+....+..+..++ |++|++.+|.+
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCc
Confidence            4444422222222222 44444444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.95  E-value=1.9e-09  Score=94.98  Aligned_cols=103  Identities=23%  Similarity=0.277  Sum_probs=89.8

Q ss_pred             eeEeecC-ccccCCChhhhcCCCcccEEEccC-CcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEee
Q 043347           36 GLDFSNN-SLTGSFPDDMCEGLPRLKGLYVSY-NQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLS  113 (385)
Q Consensus        36 ~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  113 (385)
                      .++++++ .++ .+|.  +..+++|++|++++ |.+.+..+..|..+++|+.|++++|.+.+..+..|.++++|++|+++
T Consensus        12 ~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            5788988 898 8998  55899999999996 99987777889999999999999999998888889999999999999


Q ss_pred             cccccCCCCcccCCCcCCcEEEecccccc
Q 043347          114 FNNLIGEIPQEIGSLRNLEILRIDQNNLV  142 (385)
Q Consensus       114 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  142 (385)
                      +|.+....+..+..++ |+.|++.+|.+.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            9999855555565555 999999999876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.89  E-value=1.3e-09  Score=95.75  Aligned_cols=158  Identities=13%  Similarity=0.117  Sum_probs=92.6

Q ss_pred             cccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhh--cccCceEEEccCC--CCCCC
Q 043347          197 SFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALV--NCKSLKVIVLAEN--PVDGV  272 (385)
Q Consensus       197 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~~~~~  272 (385)
                      ..+..+|+|+.|.++++.-... +. + ..++|+.|++..+.+...      ....+.  .+|+|+.|+++.+  ...+.
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l~l-~~-~-~~~~L~~L~L~~~~l~~~------~l~~l~~~~lp~L~~L~L~~~~~~~~~~  236 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNLSI-GK-K-PRPNLKSLEIISGGLPDS------VVEDILGSDLPNLEKLVLYVGVEDYGFD  236 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTCBC-CS-C-BCTTCSEEEEECSBCCHH------HHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred             HHHhcCCCCcEEEEeCCCCcee-cc-c-cCCCCcEEEEecCCCChH------HHHHHHHccCCCCcEEEEeccccccccc
Confidence            3445667777777776531111 11 2 267888888877765432      122333  6788888877531  11111


Q ss_pred             -CC----Cccc-ccccceeEEEeeccccCCCCCccc---cCCCCccEEECcCccccCC----CccccccCCCCCeEeccC
Q 043347          273 -LP----SSIG-NLSVSVEEIYMYKCNIHGRIPKEI---GNLINLTKLSLGYNNLSGS----LPITLGRLKKLQGLDLQN  339 (385)
Q Consensus       273 -~~----~~~~-~~~~~l~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~  339 (385)
                       ..    ..+. ..+++|+.|.+.+|.+....+..+   ..+|+|++|+++.|.+.+.    ++..+..+++|+.|++++
T Consensus       237 ~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~  316 (362)
T 2ra8_A          237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY  316 (362)
T ss_dssp             SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred             hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence             00    1111 123678888888877654222222   2477888888888887753    333445678888888888


Q ss_pred             CcccCCChhhhhc-CCCccEEEccCCc
Q 043347          340 NKFEGPIPHEFCH-FSRLYKFYLNRNK  365 (385)
Q Consensus       340 ~~~~~~~~~~~~~-~~~L~~L~l~~~~  365 (385)
                      |.+++.....+.. +  ..++++++++
T Consensus       317 n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          317 NYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             BBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            8877555555543 2  3567887766

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.79  E-value=4.1e-09  Score=92.55  Aligned_cols=183  Identities=14%  Similarity=0.091  Sum_probs=112.3

Q ss_pred             CCCceEEccccccCC-CC-------CcccccCCcccEEEccCcccc---------ccCcccccCCCCccEEEecCCcccc
Q 043347          179 PNLEGLILGLNNFSG-SI-------PSFFFNASKLYYLELAYNSFS---------GLIPKALGQLRNLERLGLQSNYLTS  241 (385)
Q Consensus       179 ~~L~~L~l~~~~~~~-~~-------~~~~~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~~  241 (385)
                      ..++.|.++.....+ ..       ......+++|+.|.+......         ......+..+|+|+.|.++++.-..
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~  186 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS  186 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence            346677777554331 11       122445688999988654221         1123445677899999998873111


Q ss_pred             cchhhhhhhHhhhcccCceEEEccCCCCCCCCCCccc-ccccceeEEEeecc--ccCCC-----CCccc--cCCCCccEE
Q 043347          242 STSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIG-NLSVSVEEIYMYKC--NIHGR-----IPKEI--GNLINLTKL  311 (385)
Q Consensus       242 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~l~~~--~~~~~-----~~~~~--~~~~~L~~L  311 (385)
                      .        ..+ .+++|+.|++..+.+.......+. ...++|+.|.+..+  ...+.     +...+  ..+|+|++|
T Consensus       187 l--------~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L  257 (362)
T 2ra8_A          187 I--------GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWL  257 (362)
T ss_dssp             C--------CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEE
T ss_pred             e--------ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEE
Confidence            1        112 378899999988876544333332 12378999988632  11111     11122  247899999


Q ss_pred             ECcCccccCCCccccc---cCCCCCeEeccCCcccCCChhhh----hcCCCccEEEccCCcccccC
Q 043347          312 SLGYNNLSGSLPITLG---RLKKLQGLDLQNNKFEGPIPHEF----CHFSRLYKFYLNRNKLSGSI  370 (385)
Q Consensus       312 ~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~  370 (385)
                      ++.+|.+.+.....+.   .+++|+.|+++.|.+.+..+..+    ..+++|+.|++++|.++...
T Consensus       258 ~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~  323 (362)
T 2ra8_A          258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM  323 (362)
T ss_dssp             EEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred             eCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence            9999887643333332   47889999999998886544333    45789999999999887543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.69  E-value=5.3e-09  Score=83.00  Aligned_cols=123  Identities=18%  Similarity=0.162  Sum_probs=67.4

Q ss_pred             cccCCCCccEEEecCC-cccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCc
Q 043347          222 ALGQLRNLERLGLQSN-YLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPK  300 (385)
Q Consensus       222 ~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~  300 (385)
                      .+...+.|+.|++++| .+....  ...+...+...+.|++|++++|.+.+.....                     +..
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g--~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~---------------------l~~   87 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPT--LKACAEALKTNTYVKKFSIVGTRSNDPVAFA---------------------LAE   87 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHH--HHHHHHHHTTCCSCCEEECTTSCCCHHHHHH---------------------HHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHH--HHHHHHHHHhCCCcCEEECcCCCCChHHHHH---------------------HHH
Confidence            3445566666666666 554322  2223344555566666666666554322111                     112


Q ss_pred             cccCCCCccEEECcCccccCC----CccccccCCCCCeEec--cCCcccCCCh----hhhhcCCCccEEEccCCccc
Q 043347          301 EIGNLINLTKLSLGYNNLSGS----LPITLGRLKKLQGLDL--QNNKFEGPIP----HEFCHFSRLYKFYLNRNKLS  367 (385)
Q Consensus       301 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l--~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~  367 (385)
                      .+...++|++|++++|.+.+.    +...+...++|+.|++  ++|.+.+...    ..+...++|++|++++|.+.
T Consensus        88 ~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           88 MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            233345666677766666532    3444555667777777  6677664332    33444577777887777765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.59  E-value=1.2e-08  Score=78.88  Aligned_cols=87  Identities=13%  Similarity=0.110  Sum_probs=67.3

Q ss_pred             cceeEEEeeccccCCCCCccccCCCCccEEECcCcc-ccCCCcccccc----CCCCCeEeccCC-cccCCChhhhhcCCC
Q 043347          282 VSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNN-LSGSLPITLGR----LKKLQGLDLQNN-KFEGPIPHEFCHFSR  355 (385)
Q Consensus       282 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~l~~~-~~~~~~~~~~~~~~~  355 (385)
                      ..+++|++++|.++......+..+++|++|++++|. +++.....+..    +++|++|++++| .+++.....+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            468888888888776666667789999999999985 66444444544    357999999998 588777777888999


Q ss_pred             ccEEEccCCc-ccc
Q 043347          356 LYKFYLNRNK-LSG  368 (385)
Q Consensus       356 L~~L~l~~~~-~~~  368 (385)
                      |+.|++++|+ +++
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            9999999995 554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.53  E-value=3.5e-08  Score=78.19  Aligned_cols=124  Identities=13%  Similarity=0.111  Sum_probs=84.2

Q ss_pred             cccccCCcccEEEccCc-ccccc----CcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCC
Q 043347          197 SFFFNASKLYYLELAYN-SFSGL----IPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDG  271 (385)
Q Consensus       197 ~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  271 (385)
                      ..+...++|++|++++| .+.+.    ....+...++|+.|++++|.+.+.+.  ..+...+...+.|++|++++|.+.+
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~--~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA--FALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH--HHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHH--HHHHHHHHhCCCcCEEECcCCcCCH
Confidence            34566788888888888 77543    23445667889999999998775432  2344667777888888888887764


Q ss_pred             CCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEEC--cCccccCC----CccccccCCCCCeEeccCCccc
Q 043347          272 VLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSL--GYNNLSGS----LPITLGRLKKLQGLDLQNNKFE  343 (385)
Q Consensus       272 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l--~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~  343 (385)
                      .....                     +..++...++|++|++  ++|.+...    +...+...++|++|++++|.+.
T Consensus       108 ~g~~~---------------------l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILA---------------------LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHH---------------------HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHH---------------------HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            32221                     2233455667888888  77777643    3345556788888888888775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.46  E-value=2.8e-08  Score=76.74  Aligned_cols=80  Identities=9%  Similarity=0.058  Sum_probs=67.0

Q ss_pred             CCccEEECcCccccCCCccccccCCCCCeEeccCC-cccCCChhhhhcC----CCccEEEccCCc-ccccCCCccccccc
Q 043347          306 INLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNN-KFEGPIPHEFCHF----SRLYKFYLNRNK-LSGSIPSCLGDLNS  379 (385)
Q Consensus       306 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~~~~l~~  379 (385)
                      ..|++|++++|.+++.-...+..|++|+.|+|++| .+++.....+..+    ++|++|++++|. +|+.....+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            47999999999998776777789999999999999 5887666667664    589999999994 88877777788899


Q ss_pred             CccccC
Q 043347          380 LRILSL  385 (385)
Q Consensus       380 L~~l~i  385 (385)
                      |+.|+|
T Consensus       141 L~~L~L  146 (176)
T 3e4g_A          141 LKYLFL  146 (176)
T ss_dssp             CCEEEE
T ss_pred             CCEEEC
Confidence            988864

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.29  E-value=6.6e-07  Score=74.53  Aligned_cols=79  Identities=22%  Similarity=0.325  Sum_probs=46.2

Q ss_pred             CCCCccEEECcCccccC--CCccccccCCCCCeEeccCCcccCCChhhhhcCC--CccEEEccCCcccccCCC-------
Q 043347          304 NLINLTKLSLGYNNLSG--SLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFS--RLYKFYLNRNKLSGSIPS-------  372 (385)
Q Consensus       304 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~-------  372 (385)
                      .+++|+.|++++|.+.+  .++..+..+++|+.|+|++|++.+.  ..+..+.  +|++|++++|++++..|.       
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            45667777777777664  2334455677777777777776643  2233333  677777777777654432       


Q ss_pred             cccccccCcccc
Q 043347          373 CLGDLNSLRILS  384 (385)
Q Consensus       373 ~~~~l~~L~~l~  384 (385)
                      .+..+++|+.|+
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            234555555553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.96  E-value=7.6e-06  Score=68.14  Aligned_cols=82  Identities=23%  Similarity=0.241  Sum_probs=49.9

Q ss_pred             hcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCC--C
Q 043347          254 VNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLK--K  331 (385)
Q Consensus       254 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~  331 (385)
                      ..+++|+.|++++|.+.+..                       .++..+..+++|+.|+|++|.+.+.  ..+..++  +
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~-----------------------~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~  221 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLD-----------------------DMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLK  221 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCG-----------------------GGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSC
T ss_pred             hhCCCCCEEECCCCCCCCCc-----------------------cchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCC
Confidence            34666666776666665421                       1233445677777777777777643  2233333  7


Q ss_pred             CCeEeccCCcccCCCh-------hhhhcCCCccEEE
Q 043347          332 LQGLDLQNNKFEGPIP-------HEFCHFSRLYKFY  360 (385)
Q Consensus       332 L~~L~l~~~~~~~~~~-------~~~~~~~~L~~L~  360 (385)
                      |+.|++++|.+.+..+       ..+..+|+|+.||
T Consensus       222 L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          222 LEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             CSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             cceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            8888888887765333       2355678887765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.63  E-value=3.5e-05  Score=60.65  Aligned_cols=120  Identities=13%  Similarity=0.134  Sum_probs=57.8

Q ss_pred             cCCCCccEEEecCC-cccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccc
Q 043347          224 GQLRNLERLGLQSN-YLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI  302 (385)
Q Consensus       224 ~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~  302 (385)
                      ..-+.|+.|+++++ .+.+.  +...+..++...+.|+.|++++|.+.+.....                     +..++
T Consensus        38 ~~n~~L~~L~L~~nn~igd~--ga~~la~aL~~N~~L~~L~L~~n~igd~ga~a---------------------lA~aL   94 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKE--RIRSLIEAACNSKHIEKFSLANTAISDSEARG---------------------LIELI   94 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHH--HHHHHHHHHTTCSCCCEEECTTSCCBHHHHTT---------------------HHHHH
T ss_pred             hcCCCccEEECCCCCCCCHH--HHHHHHHHHhhCCCcCEEEccCCCCChHHHHH---------------------HHHHH
Confidence            34456666666653 44322  22234455555666666666666555332221                     12223


Q ss_pred             cCCCCccEEECcCccccCC----CccccccCCCCCeEeccCC---cccCC----ChhhhhcCCCccEEEccCCcc
Q 043347          303 GNLINLTKLSLGYNNLSGS----LPITLGRLKKLQGLDLQNN---KFEGP----IPHEFCHFSRLYKFYLNRNKL  366 (385)
Q Consensus       303 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~---~~~~~----~~~~~~~~~~L~~L~l~~~~~  366 (385)
                      ..-++|++|+|++|.+.+.    +.+.+...+.|+.|+++++   ++.+.    +.+.+..-+.|.+|+++.+.+
T Consensus        95 ~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A           95 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             hcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            3344566666666655532    2233344455666666543   22211    222344456666666665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.25  E-value=0.00017  Score=56.69  Aligned_cols=91  Identities=11%  Similarity=0.084  Sum_probs=50.0

Q ss_pred             CCCCCceEEccccccCC----CCCcccccCCcccEEEccCccccccC----cccccCCCCccEEEecCCcccccch-hhh
Q 043347          177 GLPNLEGLILGLNNFSG----SIPSFFFNASKLYYLELAYNSFSGLI----PKALGQLRNLERLGLQSNYLTSSTS-ELM  247 (385)
Q Consensus       177 ~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~-~~~  247 (385)
                      .-..|+.|++++|.+.+    .+.+.+...+.|++|+++.|.+.+..    .+.+...+.|+.|+++++.....+. +..
T Consensus        68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~  147 (197)
T 1pgv_A           68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM  147 (197)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred             hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence            34455566665555542    23344555566777777777665432    2344555667777776543311222 223


Q ss_pred             hhhHhhhcccCceEEEccCC
Q 043347          248 SLFSALVNCKSLKVIVLAEN  267 (385)
Q Consensus       248 ~~~~~~~~~~~L~~L~l~~~  267 (385)
                      ++...+...+.|+.|+++.+
T Consensus       148 ~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          148 DMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHhCCCcCeEeccCC
Confidence            34556666777777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.33  E-value=0.0092  Score=43.59  Aligned_cols=56  Identities=23%  Similarity=0.276  Sum_probs=38.7

Q ss_pred             EEEeeccccC-CCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCccc
Q 043347          286 EIYMYKCNIH-GRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFE  343 (385)
Q Consensus       286 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  343 (385)
                      .++-++..++ ..+|..+  .++|+.|+|++|.++...+..|..+++|+.|+|.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            3444444443 1344332  247899999999998666667788889999999998775

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.58  E-value=0.023  Score=41.43  Aligned_cols=33  Identities=21%  Similarity=0.130  Sum_probs=13.0

Q ss_pred             ccEEEccCCcccCcCCCCccCCCCCcEEecccc
Q 043347           59 LKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFN   91 (385)
Q Consensus        59 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   91 (385)
                      |++|+|++|.++......|..+++|+.|++++|
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            344444444443333333333344444444333

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=88.23  E-value=1.5  Score=29.91  Aligned_cols=43  Identities=14%  Similarity=0.172  Sum_probs=26.0

Q ss_pred             CCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEeccc
Q 043347           47 SFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSF   90 (385)
Q Consensus        47 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~   90 (385)
                      .+...+|.+|..|+.+.|..+ ++.....+|..|.+|+.+.+..
T Consensus        10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A           10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred             EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence            555666666666666666554 3445555666666666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	385
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	6e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 79.7 bits (195), Expect = 4e-17
 Identities = 79/390 (20%), Positives = 124/390 (31%), Gaps = 38/390 (9%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV 64
            LAE    VL    +T T+  +  +L  ++T L      +      D  E L  L  +  
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTT-LQADRLGIKSI---DGVEYLNNLTQINF 73

Query: 65  SYNQFKGPIP----NNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGE 120
           S NQ     P      L      +                       ++  +     +  
Sbjct: 74  SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 121 IPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLI---- 176
           + +   S   +  +                 ++ LK L+ L      ++ S+K       
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 177 -GLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQ 235
             L NLE LI   N  S   P      + L  L L  N         L  L NL  L L 
Sbjct: 194 AKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 236 SNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIH 295
           +N +++         + L     L  + L  N +  + P     L+       +      
Sbjct: 250 NNQISN--------LAPLSGLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQ 296

Query: 296 GRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSR 355
                 I NL NLT L+L +NN+S   P+    L KLQ L   NNK          + + 
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFANNKVSDV--SSLANLTN 352

Query: 356 LYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
           +       N++S   P  L +L  +  L L
Sbjct: 353 INWLSAGHNQISDLTP--LANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.4 bits (171), Expect = 5e-14
 Identities = 72/349 (20%), Positives = 125/349 (35%), Gaps = 38/349 (10%)

Query: 3   LGNLAELEVLVLNNNLLTGTIP-----------ASIFNLSSISTGLDFSNNSLTGSFPDD 51
           +  L  L  +  +NN LT   P            +   ++ I+   + +N +    F + 
Sbjct: 62  VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 121

Query: 52  MCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLY 111
           + +  P      ++  +      +++     L+ +            + L N T L+ L 
Sbjct: 122 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 181

Query: 112 LSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPS 171
           +S N         +  L NLE L    N +    P     ++ L  LSL  N L      
Sbjct: 182 ISSNK--VSDISVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD---- 233

Query: 172 SKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLER 231
              L  L NL  L L  N  S   P      +KL  L+L  N  S + P A         
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--------- 282

Query: 232 LGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYK 291
            GL +          +   S + N K+L  + L  N +  + P  + +L+  ++ ++   
Sbjct: 283 -GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLT-KLQRLFFAN 338

Query: 292 CNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNN 340
             +       + NL N+  LS G+N +S   P  L  L ++  L L + 
Sbjct: 339 NKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
            + +L +L+ L   NN ++    +S+ NL++I+  L   +N ++   P      L R+  
Sbjct: 324 PVSSLTKLQRLFFANNKVSD--VSSLANLTNINW-LSAGHNQISDLTP---LANLTRITQ 377

Query: 62  LYVSYN 67
           L ++  
Sbjct: 378 LGLNDQ 383

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (184), Expect = 4e-16
 Identities = 58/284 (20%), Positives = 95/284 (33%), Gaps = 15/284 (5%)

Query: 85  RVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGF 144
             S         +P  +  +++   ++L  N +         + RNL IL +  N L   
Sbjct: 15  TTSCPQQGLQ-AVPVGIPAASQR--IFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 145 IPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASK 204
                  ++ L+ L L +N    ++       GL  L  L L         P  F   + 
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 205 LYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVL 264
           L YL L  N+   L       L NL  L L  N ++S          A     SL  ++L
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS------VPERAFRGLHSLDRLLL 184

Query: 265 AENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPI 324
            +N V  V P +  +L   +  +Y++  N+     + +  L  L  L L  N        
Sbjct: 185 HQNRVAHVHPHAFRDL-GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

Query: 325 TLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSG 368
                  LQ     +++    +P      +      L  N L G
Sbjct: 244 -RPLWAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 2e-13
 Identities = 57/263 (21%), Positives = 90/263 (34%), Gaps = 14/263 (5%)

Query: 22  TIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCK 81
            +P  I   S     +    N ++   P         L  L++  N              
Sbjct: 25  AVPVGIPAAS---QRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80

Query: 82  ELSRVSLSFNQFTGRI-PRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNN 140
            L ++ LS N     + P       +L  L+L    L    P     L  L+ L +  N 
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

Query: 141 LVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFF 200
           L     DT  ++  L  L L  N +S     +    GL +L+ L+L  N  +   P  F 
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERA--FRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 201 NASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLK 260
           +  +L  L L  N+ S L  +AL  LR L+ L L  N           L++       L+
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW-VCDCRARPLWA------WLQ 251

Query: 261 VIVLAENPVDGVLPSSIGNLSVS 283
               + + V   LP  +    + 
Sbjct: 252 KFRGSSSEVPCSLPQRLAGRDLK 274

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 2e-10
 Identities = 44/257 (17%), Positives = 79/257 (30%), Gaps = 29/257 (11%)

Query: 7   AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNS----------------------- 43
           A  + + L+ N ++    AS     +++     SN                         
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 44  LTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGN 103
              S       GL RL  L++     +   P        L  + L  N           +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 104 STKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNN 163
              L  L+L  N +     +    L +L+ L + QN +    P    ++  L TL L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 164 TLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKAL 223
            LS     +   +    L+ L L  N +     +     + L     + +     +P+  
Sbjct: 212 NLSALPTEALAPL--RALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQ-- 266

Query: 224 GQLRNLERLGLQSNYLT 240
            +L   +   L +N L 
Sbjct: 267 -RLAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 25/129 (19%), Positives = 34/129 (26%)

Query: 257 KSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYN 316
            + + I L  N +  V  +S                          G  +          
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 317 NLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGD 376
            L    P T   L +L  L L     +   P  F   + L   YL  N L         D
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 377 LNSLRILSL 385
           L +L  L L
Sbjct: 152 LGNLTHLFL 160

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.1 bits (183), Expect = 8e-16
 Identities = 50/269 (18%), Positives = 93/269 (34%), Gaps = 20/269 (7%)

Query: 81  KELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNN 140
            + + + L  N+ T     D  N   L  L L  N +    P     L  LE L + +N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 141 LVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFF 200
           L          +  L+      N ++    S    +    +  L       SG     F 
Sbjct: 91  LKELPEKMPKTLQELRV---HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 201 NASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLK 260
              KL Y+ +A  + + +     G   +L  L L  N +T          ++L    +L 
Sbjct: 148 GMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKIT------KVDAASLKGLNNLA 198

Query: 261 VIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSG 320
            + L+ N +  V   S+ N    + E+++    +  ++P  + +   +  + L  NN+S 
Sbjct: 199 KLGLSFNSISAVDNGSLANTPH-LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256

Query: 321 ------SLPITLGRLKKLQGLDLQNNKFE 343
                   P    +     G+ L +N  +
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.1 bits (183), Expect = 9e-16
 Identities = 60/263 (22%), Positives = 96/263 (36%), Gaps = 9/263 (3%)

Query: 7   AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSY 66
            +  +L L NN +T        NL ++ T L   NN ++   P      L +L+ LY+S 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHT-LILINNKISKISPGAFA-PLVKLERLYLSK 88

Query: 67  NQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIG 126
           NQ K          +EL        +    +   L     ++ L  +     G       
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQ 147

Query: 127 SLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLIL 186
            ++ L  +RI   N+   IP  +    +L  L L  N ++    +S  L GL NL  L L
Sbjct: 148 GMKKLSYIRIADTNI-TTIPQGLP--PSLTELHLDGNKITKVDAAS--LKGLNNLAKLGL 202

Query: 187 GLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSEL 246
             N+ S        N   L  L L  N     +P  L   + ++ + L +N +++  S  
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 247 MSLFSALVNCKSLKVIVLAENPV 269
                      S   + L  NPV
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.8 bits (172), Expect = 2e-14
 Identities = 59/300 (19%), Positives = 105/300 (35%), Gaps = 28/300 (9%)

Query: 96  RIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTL 155
           ++P+DL       LL L  N +      +  +L+NL  L +  N +    P     +  L
Sbjct: 24  KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 156 KTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLEL--AYN 213
           + L L  N L               L+ L +  N  +    S F   +++  +EL     
Sbjct: 82  ERLYLSKNQLKELPEKMP-----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 136

Query: 214 SFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVL 273
             SG+   A   ++ L  + +    +T+    L           SL  + L  N +  V 
Sbjct: 137 KSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---------PPSLTELHLDGNKITKVD 187

Query: 274 PSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQ 333
            +S+  L+  + ++ +   +I       + N  +L +L L  N L    P  L   K +Q
Sbjct: 188 AASLKGLNN-LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQ 245

Query: 334 GLDLQNNKFEGPIPHEFC------HFSRLYKFYLNRNKLSGS--IPSCLGDLNSLRILSL 385
            + L NN       ++FC        +      L  N +      PS    +     + L
Sbjct: 246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.4 bits (145), Expect = 7e-11
 Identities = 47/245 (19%), Positives = 87/245 (35%), Gaps = 15/245 (6%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           +  NL  L  L+L NN ++   P +   L  +   L  S N L    P+ M + L  L+ 
Sbjct: 50  DFKNLKNLHTLILINNKISKISPGAFAPLVKLER-LYLSKNQLK-ELPEKMPKTLQELRV 107

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
                 + +  + N L     +   +    + +G          KL  + ++  N+   I
Sbjct: 108 HENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNI-TTI 165

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
           PQ  G   +L  L +D N +      ++  ++ L  L L  N++S     S         
Sbjct: 166 PQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR- 222

Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGL------IPKALGQLRNLERLGLQ 235
              +   NN    +P    +   +  + L  N+ S +       P    +  +   + L 
Sbjct: 223 --ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 280

Query: 236 SNYLT 240
           SN + 
Sbjct: 281 SNPVQ 285

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.5 bits (176), Expect = 8e-15
 Identities = 54/257 (21%), Positives = 92/257 (35%), Gaps = 25/257 (9%)

Query: 4   GNLAELEVLVLNNNLLTG--TIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
                +  L L+   L     IP+S+ NL  ++       N+L G  P  + +   +L  
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHY 105

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           LY+++    G IP+ L   K L  +  S+N  +G +P  + +   L  +    N + G I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLS---------------------L 160
           P   GS   L        N +       F    L  +                       
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 161 LNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIP 220
           ++   +       K+    NL GL L  N   G++P        L+ L +++N+  G IP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 221 KALGQLRNLERLGLQSN 237
              G L+  +     +N
Sbjct: 286 -QGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 70.6 bits (171), Expect = 3e-14
 Identities = 68/277 (24%), Positives = 104/277 (37%), Gaps = 16/277 (5%)

Query: 102 GNSTKLKLLYLSFNNLIG--EIPQEIGSLRNLEILRIDQN-NLVGFIPDTIFNMSTLKTL 158
             + ++  L LS  NL     IP  + +L  L  L I    NLVG IP  I  ++ L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 159 SLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGL 218
            + +  +SG +P     I    L  L    N  SG++P    +   L  +    N  SG 
Sbjct: 107 YITHTNVSGAIPDFLSQI--KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 219 IPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIG 278
           IP + G    L      S       + L           +L  + L+ N ++G      G
Sbjct: 165 IPDSYGSFSKLFTSMTISR------NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218

Query: 279 NLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQ 338
           +   + +                +   +N   L    N + G+LP  L +LK L  L++ 
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR--NNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 339 NNKFEGPIPHEFCHFSRLYKFYLNRNK-LSGS-IPSC 373
            N   G IP +  +  R        NK L GS +P+C
Sbjct: 277 FNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.4 bits (142), Expect = 2e-10
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 78  WHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRID 137
              K L+ + L  N+  G +P+ L     L  L +SFNNL GEIP + G+L+  ++    
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYA 299

Query: 138 QNNLVGFIP 146
            N  +   P
Sbjct: 300 NNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.5 bits (119), Expect = 1e-07
 Identities = 54/244 (22%), Positives = 89/244 (36%), Gaps = 9/244 (3%)

Query: 143 GFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLIL-GLNNFSGSIPSFFFN 201
           G + DT      +  L L    L    P    L  LP L  L + G+NN  G IP     
Sbjct: 40  GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99

Query: 202 ASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKV 261
            ++L+YL + + + SG IP  L Q++ L  L    N      +   +L  ++ +  +L  
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN------ALSGTLPPSISSLPNLVG 153

Query: 262 IVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGS 321
           I    N + G +P S G+ S     + + +  + G+IP    NL               +
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA 213

Query: 322 LPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLR 381
             +      K                 +      L    L  N++ G++P  L  L  L 
Sbjct: 214 SVLF--GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 382 ILSL 385
            L++
Sbjct: 272 SLNV 275

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMC 53
            L  L  L  L ++ N L G IP    NL        ++NN      P   C
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDV-SAYANNKCLCGSPLPAC 312

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 43/216 (19%), Positives = 62/216 (28%), Gaps = 15/216 (6%)

Query: 53  CEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYL 112
              +     +          +P +L   K+ + + LS N         L   T+L  L L
Sbjct: 6   VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 113 SFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSS 172
               L             L +L     +        +   +      L  +         
Sbjct: 63  DRAELTKLQVD-----GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 173 KKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERL 232
             L GL  L+ L L  N      P       KL  L LA N+ + L    L  L NL+ L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 233 GLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENP 268
            LQ N        L ++         L    L  NP
Sbjct: 178 LLQEN-------SLYTIPKGFFGSHLLPFAFLHGNP 206

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 7e-07
 Identities = 37/243 (15%), Positives = 67/243 (27%), Gaps = 40/243 (16%)

Query: 100 DLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLS 159
           ++        +     NL   +P ++   ++  IL + +N L  F   T+   + L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 160 LLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLI 219
           L        L   +    LP L  L L  N             +                
Sbjct: 62  LDRA----ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR------ 111

Query: 220 PKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGN 279
                                     L SL    +        +  +      LP  +  
Sbjct: 112 --------------------------LTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 280 LSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQN 339
            +  +E++ +   N+       +  L NL  L L  N+L  ++P        L    L  
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204

Query: 340 NKF 342
           N +
Sbjct: 205 NPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 9e-06
 Identities = 32/187 (17%), Positives = 52/187 (27%), Gaps = 17/187 (9%)

Query: 194 SIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSAL 253
           ++P           L L+ N         L     L +L L    LT    +        
Sbjct: 24  ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81

Query: 254 VNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEI-------------YMYKCNIHGRIPK 300
           ++    ++  L          + +      +  +                K N    +P 
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

Query: 301 EIGNLINLTKL-SLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKF 359
            +       +  SL  NNL+      L  L+ L  L LQ N     IP  F     L   
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA 200

Query: 360 YLNRNKL 366
           +L+ N  
Sbjct: 201 FLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 5e-05
 Identities = 39/207 (18%), Positives = 60/207 (28%), Gaps = 51/207 (24%)

Query: 2   ELGNLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
           E+  +A    +  +   LT  +P  +   ++I   L  S N L       +     RL  
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKDTTI---LHLSENLLYTFSLATLM-PYTRLTQ 59

Query: 62  LYVSYNQ---------------------------------------------FKGPIPNN 76
           L +   +                                                     
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 77  LWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRI 136
           L    EL  + L  N+     P  L  + KL+ L L+ NNL       +  L NL+ L +
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 137 DQNNLVGFIPDTIFNMSTLKTLSLLNN 163
            +N+L   IP   F    L    L  N
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 33/179 (18%), Positives = 52/179 (29%), Gaps = 46/179 (25%)

Query: 7   AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGL---------- 56
            +  +L L+ NLL     A++   + ++  L+     LT    D     L          
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQ-LNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 57  ----------------------------------PRLKGLYVSYNQFKGPIPNNLWHCKE 82
                                               L+ LY+  N+ K   P  L    +
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 83  LSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNL 141
           L ++SL+ N  T      L     L  L L  N+L   IP+       L    +  N  
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLI 118
            ++ N         L   + L  + L  N     IP+    S  L   +L  N  +
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 2e-06
 Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 13/101 (12%)

Query: 47  SFPDDMCEGLPRLKGLYVSYNQFKG----PIPNNLWHCKELSRVSLSFNQFTGRIPRDLG 102
                + +    L+ L+++           +   L     L  + LS N         L 
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 103 -----NSTKLKLLYLSFNNLIGEIPQEIGSLR----NLEIL 134
                    L+ L L       E+   + +L     +L ++
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 4e-06
 Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 13/94 (13%)

Query: 304 NLINLTKLSLGYNNLSG----SLPITLGRLKKLQGLDLQNNKFEGPIPHEFC-----HFS 354
               L  L L   ++S     SL  TL     L+ LDL NN        +          
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 355 RLYKFYLNRNKLSGSIPSCLGDL----NSLRILS 384
            L +  L     S  +   L  L     SLR++S
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 6e-06
 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 9/89 (10%)

Query: 37  LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKG----PIPNNLWHCKELSRVSLSFNQ 92
           LD     L+ +   ++   L + + + +            I + L     L+ ++L  N+
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 93  FTGRIPRDLG-----NSTKLKLLYLSFNN 116
                   +       S K++ L L    
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 9e-05
 Identities = 12/98 (12%), Positives = 31/98 (31%), Gaps = 5/98 (5%)

Query: 281 SVSVEEIYMYKCNI-HGRIPKEIGNLINLTKLSLGYNNLSG----SLPITLGRLKKLQGL 335
           S+ ++ + +    +   R  + +  L     + L    L+      +   L     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 336 DLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSC 373
           +L++N+      H      +     + +  L     + 
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 7/90 (7%)

Query: 196 PSFFFNASKLYYLELAYNSFSGL----IPKALGQLRNLERLGLQSNYLTSSTSELMSLFS 251
                  S L  L LA    S      +   L    +L  L L +N L  +   ++ L  
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG--ILQLVE 419

Query: 252 AL-VNCKSLKVIVLAENPVDGVLPSSIGNL 280
           ++      L+ +VL +      +   +  L
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 151 NMSTLKTLSLLNNTLSGNLPSS--KKLIGLPNLEGLILGLNNFSGSIPSFFFNA-----S 203
             S L+ L L +  +S +  SS    L+   +L  L L  N    +       +      
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 204 KLYYLELAYNSFSGLIPKALGQLR 227
            L  L L    +S  +   L  L 
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 6e-04
 Identities = 14/125 (11%), Positives = 34/125 (27%), Gaps = 26/125 (20%)

Query: 228 NLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEI 287
           +++ L +Q   L+ +      L   L  C+ ++   L +  +       I +        
Sbjct: 3   DIQSLDIQCEELSDA--RWAELLPLLQQCQVVR---LDDCGLTEARCKDISSA------- 50

Query: 288 YMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIP 347
                         +     L +L+L  N L       + +  +     +Q    +    
Sbjct: 51  --------------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

Query: 348 HEFCH 352
                
Sbjct: 97  TGAGC 101

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 5/91 (5%)

Query: 155 LKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSG----SIPSFFFNASKLYYLEL 210
           +++L +    LS +   ++ L  L   + + L     +      I S       L  L L
Sbjct: 4   IQSLDIQCEELS-DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 211 AYNSFSGLIPKALGQLRNLERLGLQSNYLTS 241
             N    +    + Q        +Q   L +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 14/99 (14%), Positives = 25/99 (25%), Gaps = 5/99 (5%)

Query: 59  LKGLYVSYNQFKGPIPNNLW-HCKELSRVSLSFNQFTGR----IPRDLGNSTKLKLLYLS 113
           ++ L +   +        L    ++   V L     T      I   L  +  L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 114 FNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNM 152
            N L       +         +I + +L           
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 102

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 9/79 (11%)

Query: 103 NSTKLKLLYLSFNNL----IGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIF-----NMS 153
             + L++L+L+  ++       +   + +  +L  L +  N L       +         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 154 TLKTLSLLNNTLSGNLPSS 172
            L+ L L +   S  +   
Sbjct: 427 LLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.004
 Identities = 10/92 (10%), Positives = 27/92 (29%), Gaps = 5/92 (5%)

Query: 82  ELSRVSLSFNQFT-GRIPRDLGNSTKLKLLYLSFNNL----IGEIPQEIGSLRNLEILRI 136
           ++  + +   + +  R    L    + +++ L    L      +I   +     L  L +
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 137 DQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGN 168
             N L       +       +  +   +L   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 9/95 (9%)

Query: 288 YMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIP 347
             Y       I        +L +L++  N L   LP    RL++   L    N     +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLAE-VP 320

Query: 348 HEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRI 382
                   L + ++  N L    P     +  LR+
Sbjct: 321 EL---PQNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 13/101 (12%)

Query: 63  YVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIP 122
               N     I +       L  +++S N+    +P        L+ L  SFN+L  E+P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL-AEVP 320

Query: 123 QEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNN 163
           +      NL+ L ++ N L    PD   ++  L+    +N+
Sbjct: 321 ELPQ---NLKQLHVEYNPLRE-FPDIPESVEDLR----MNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 11/92 (11%)

Query: 138 QNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPS 197
            N     I        +L+ L++ NN L   LP+       P LE LI   N+ +  +P 
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL-----PPRLERLIASFNHLA-EVPE 321

Query: 198 FFFNASKLYYLELAYNSFSGLIPKALGQLRNL 229
              N   L  L + YN      P     + +L
Sbjct: 322 LPQN---LKQLHVEYNPLREF-PDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 26/110 (23%), Positives = 36/110 (32%), Gaps = 10/110 (9%)

Query: 65  SYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQE 124
               F     N      EL       N  +  I         L+ L +S N LI E+P  
Sbjct: 244 QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL 302

Query: 125 IGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSG--NLPSS 172
              L  L        N +  +P+   N   LK L +  N L    ++P S
Sbjct: 303 PPRLERLIA----SFNHLAEVPELPQN---LKQLHVEYNPLREFPDIPES 345

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 23/97 (23%), Positives = 33/97 (34%), Gaps = 34/97 (35%)

Query: 37  LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR 96
           L+ SNN L    P       PRL+ L  S+N                             
Sbjct: 289 LNVSNNKLI-ELPA----LPPRLERLIASFNHLA-------------------------E 318

Query: 97  IPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEI 133
           +P    N   LK L++ +N L  E P    S+ +L +
Sbjct: 319 VPELPQN---LKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 36/216 (16%), Positives = 66/216 (30%), Gaps = 15/216 (6%)

Query: 177 GLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQS 236
            L N   +  G +N + ++     +   +  L       + +  + +  L NL  L L+ 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 237 NYL--TSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNI 294
           N +   +    L  +    ++   LK +                     V  +       
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 295 H-----GRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHE 349
                  +I              L   N   S    L  L KL  L   +NK     P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 350 FCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL 385
                 L + +L  N++S   P  L + ++L I++L
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 32/220 (14%), Positives = 61/220 (27%), Gaps = 17/220 (7%)

Query: 127 SLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLIL 186
           +L N   +   ++N+   +     ++  + TLS         + + + +  L NL GL L
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGT----GVTTIEGVQYLNNLIGLEL 70

Query: 187 GLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRN-------LERLGLQSNYL 239
             N  +   P           L          I                 +   L     
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 240 TSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIP 299
                  ++  + +     L  +         V   +       +  +      I    P
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190

Query: 300 KEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQN 339
             + +L NL ++ L  N +S   P  L     L  + L N
Sbjct: 191 --LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 73  IPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLE 132
           I N        +   LS           L N +KL  L    N +    P  + SL NL 
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLI 198

Query: 133 ILRIDQNNLVGFIPDTIFNMSTLKTLSLLN 162
            + +  N +    P  + N S L  ++L N
Sbjct: 199 EVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 43/220 (19%), Positives = 69/220 (31%), Gaps = 26/220 (11%)

Query: 5   NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV 64
            LA    +    + +T T+  +  +L  I+T L      +T     +  + L  L GL +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITT-LSAFGTGVTTI---EGVQYLNNLIGLEL 70

Query: 65  SYNQF-KGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQ 123
             NQ        NL    EL          +         +  L    ++    +  +  
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 124 EIGSLRNLEILRI-------------DQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLP 170
                 +L  +                  N        + N+S L TL   +N +S   P
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190

Query: 171 SSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLEL 210
               L  LPNL  + L  N  S   P    N S L+ + L
Sbjct: 191 ----LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 46/294 (15%), Positives = 86/294 (29%), Gaps = 31/294 (10%)

Query: 3   LGNLAELEVLVLN-NNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKG 61
            G L    V+             A  F+   +   +D SN+ +  S    +     +L+ 
Sbjct: 17  TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQH-MDLSNSVIEVSTLHGILSQCSKLQN 75

Query: 62  LYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI 121
           L +   +   PI N L     L R++LS              S+  +L  L+ +      
Sbjct: 76  LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 135

Query: 122 PQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNL 181
            + +          I Q NL G+  +   +                   S+        +
Sbjct: 136 EKHVQVAVAHVSETITQLNLSGYRKNLQKSD-----------------LSTLVRRCPNLV 178

Query: 182 EGLILGLNNFSGSIPSFFFNASKLYYLELAY-NSFSGLIPKALGQLRNLERLGLQSNYLT 240
              +             FF  + L +L L+            LG++  L+ L +      
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238

Query: 241 SSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNI 294
            +   L            L++     +    +   +IGN      EI+  KC +
Sbjct: 239 GTLQLLKE------ALPHLQI---NCSHFTTIARPTIGNKKNQ--EIWGIKCRL 281

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 2/88 (2%)

Query: 299 PKEIGNLINLTKLSLGYNNLSGSLPI-TLGRLKKLQGLDLQNNKFEG-PIPHEFCHFSRL 356
           P   G L++   ++          P+       ++Q +DL N+  E   +       S+L
Sbjct: 14  PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 73

Query: 357 YKFYLNRNKLSGSIPSCLGDLNSLRILS 384
               L   +LS  I + L   ++L  L+
Sbjct: 74  QNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 8e-04
 Identities = 37/251 (14%), Positives = 79/251 (31%), Gaps = 30/251 (11%)

Query: 110 LYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNL 169
           L L+  NL  ++   + S + +   R  ++ +   + +  F+   ++ + L N+ +  + 
Sbjct: 5   LDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVST 62

Query: 170 PSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAY--NSFSGLIPKALGQLR 227
                L     L+ L L     S  I +     S L  L L+         +   L    
Sbjct: 63  LHGI-LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 228 NLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVS---- 283
            L+ L L   +  +     +++         L +    +N     L + +          
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 284 --------------------VEEIYMYKCN-IHGRIPKEIGNLINLTKLSLGYNNLSGSL 322
                               ++ + + +C  I      E+G +  L  L +      G+L
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 323 PITLGRLKKLQ 333
            +    L  LQ
Sbjct: 242 QLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 34/255 (13%), Positives = 66/255 (25%), Gaps = 18/255 (7%)

Query: 35  TGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFT 94
             LD +  +L       +      +       +    P+  +    + +  + LS +   
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIE 59

Query: 95  GR-IPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDT----- 148
              +   L   +KL+ L L    L   I   +    NL  L +   +             
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 149 ---IFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKL 205
              +  ++           +   +    + I   NL G        S          + +
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR-KNLQKSDLSTLVRRCPNLV 178

Query: 206 YYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLA 265
           +              +   QL  L+ L L   Y     +        L    +LK + + 
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET-----LLELGEIPTLKTLQVF 233

Query: 266 ENPVDGVLPSSIGNL 280
               DG L      L
Sbjct: 234 GIVPDGTLQLLKEAL 248

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 6e-05
 Identities = 35/233 (15%), Positives = 65/233 (27%), Gaps = 10/233 (4%)

Query: 110 LYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNL 169
                + +  EIP ++   RN   LR     L             L+ + +  N +   +
Sbjct: 13  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 170 PSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNL 229
            +          E  I   NN     P  F N   L YL ++      L           
Sbjct: 70  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ- 128

Query: 230 ERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYM 289
                +          + ++        S + ++L  N        +       ++E+ +
Sbjct: 129 -----KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL 183

Query: 290 YKCNIHGRIPKEI-GNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNK 341
              N    +P ++         L +    +       L  LKKL+     N K
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 33/231 (14%), Positives = 61/231 (26%), Gaps = 12/231 (5%)

Query: 34  STGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQF 93
           +       + +T   P D+         L     + +           +L ++ +S N  
Sbjct: 10  NRVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 94  TGRIPRDLGNSTKLKLLYLSF--NNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFN 151
              I  D+ ++            NNL+   P+   +L NL+ L I    +         +
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 152 MSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELA 211
                 L + +N     +  +  +        L L  N         F            
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 212 YNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVI 262
            N+   L             L +    + S  S        L N K L+  
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSY------GLENLKKLRAR 230

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 5e-04
 Identities = 37/226 (16%), Positives = 63/226 (27%), Gaps = 9/226 (3%)

Query: 15  NNNLLTGTIPASIF-NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPI 73
             + +T  IP+ +  N       L F    L          G   L+ + +S N     I
Sbjct: 16  QESKVT-EIPSDLPRNA----IELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 74  PNNLWHCKELSR--VSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNL 131
             +++              N      P    N   L+ L +S   +              
Sbjct: 70  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129

Query: 132 EILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNF 191
            +L I  N  +  I    F   + +++ L  N        +    G    E  +   NN 
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189

Query: 192 SGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSN 237
                  F  AS    L+++      L    L  L+ L      + 
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 3/94 (3%)

Query: 78  WHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRID 137
               E   + L+ N            +   +L     NNL               IL I 
Sbjct: 150 GLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 209

Query: 138 QNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPS 171
           +  +       + N+  L+  S  N      LP+
Sbjct: 210 RTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 1e-04
 Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 4/145 (2%)

Query: 9   LEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQ 68
              L    +         +    ++ T L   N             GL  L+ L +  + 
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENL-TELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 69  FKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLI-GEIPQEIGS 127
            +   P+       LSR++LSFN     +         L+ L LS N L      + +  
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 128 LRNLEILRIDQNNLVGFIPDTIFNM 152
                +  + +  L       + +M
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLAHM 151

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 4e-04
 Identities = 26/128 (20%), Positives = 39/128 (30%), Gaps = 8/128 (6%)

Query: 133 ILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFS 192
           +L +   +L   +   +  +  +  L L +N L    P+   L  L  L+     L N  
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 193 GSIPSFFFNASKLYYLELAYNSFSGL-IPKALGQLRNLERLGLQSNYLTSSTSELMSLFS 251
           G              L L  N        + L     L  L LQ N L         L  
Sbjct: 60  GVANLPRL-----QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 252 ALVNCKSL 259
            L +  S+
Sbjct: 115 MLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 5e-04
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 87  SLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIP 146
            L+    T  +   L     +  L LS N L    P  + +LR LE+  +  ++      
Sbjct: 4   HLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEV--LQASDNALENV 58

Query: 147 DTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSG 193
           D + N+  L+ L L NN L     + + L+  P L  L L  N+   
Sbjct: 59  DGVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 11/123 (8%)

Query: 11  VLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYV-SYNQF 69
           VL L +  LT  +   +  L  ++  LD S+N L       +   L  L+ L V   +  
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTH-LDLSHNRLRA-----LPPALAALRCLEVLQASDN 53

Query: 70  KGPIPNNLWHCKELSRVSLSFNQFTG-RIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSL 128
                + + +   L  + L  N+       + L +  +L LL L  N+L  +       L
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERL 112

Query: 129 RNL 131
             +
Sbjct: 113 AEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 10/126 (7%)

Query: 37  LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR 96
           L  ++  LT        E L  +  L +S+N+ +   P  L   + L  +  S N     
Sbjct: 3   LHLAHKDLTVL---CHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV 58

Query: 97  IPRDLGNSTKLKLLYLSFNNLIG-EIPQEIGSLRNLEILRIDQNNLV---GFIPDTIFNM 152
                 N  +L+ L L  N L      Q + S   L +L +  N+L    G        +
Sbjct: 59  DGVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 153 STLKTL 158
            ++ ++
Sbjct: 117 PSVSSI 122

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 6e-04
 Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 3/125 (2%)

Query: 96  RIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTL 155
           ++   +          L    L      ++ +     +L   ++++   +     N+  L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNR-RSSMAATLRIIEENIPEL 67

Query: 156 KTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSF 215
            +L+L NN L      S  +   PNL+ L L  N              KL  L L  NS 
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 216 SGLIP 220
           S    
Sbjct: 128 SDTFR 132

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 46/326 (14%), Positives = 84/326 (25%), Gaps = 28/326 (8%)

Query: 87  SLSFNQFTGR----IPRDLGNSTKLKLLYLSFNNLIGE----IPQEIGSLRNLEILRIDQ 138
           SL  +  T      +   L     +K + LS N +  E    + + I S ++LEI     
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 139 NNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSG-SIPS 197
                   +    +  L    L    L     S            +     +     +  
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 198 FFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFS------ 251
                      ++A       + K       L  +    N L + + +  +         
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 252 ALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKL 311
             V      +       +     +    L V   +   +       +   + +  NL +L
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248

Query: 312 SLGYNNLSGSLPITLGR------LKKLQGLDLQNNKFEGPIPHEFC-----HFSRLYKFY 360
            L    LS      +           LQ L LQ N+ E                 L    
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 361 LNRNKLS--GSIPSCLGDLNSLRILS 384
           LN N+ S    +   + ++ S R   
Sbjct: 309 LNGNRFSEEDDVVDEIREVFSTRGRG 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 49/307 (15%), Positives = 89/307 (28%), Gaps = 23/307 (7%)

Query: 59  LKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGR----IPRDLGNSTKLKLLYLSF 114
           LK   ++    K  +   L     +  + LS N         +  ++ +   L++   S 
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 115 NNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSK- 173
                   +   +LR L    +    L            T +   +   +    L     
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 174 KLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLER-- 231
              GL    G  +       ++     NA  L  +    N       K   +     R  
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 232 -LGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGN---LSVSVEEI 287
                             L   L  C+ LKV+ L +N    +  S++        ++ E+
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248

Query: 288 YMYKCNIHGRIPKEIGN------LINLTKLSLGYNNLSGSLPITL-----GRLKKLQGLD 336
            +  C +  R    + +       I L  L L YN +      TL      ++  L  L+
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 337 LQNNKFE 343
           L  N+F 
Sbjct: 309 LNGNRFS 315

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	385
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.19
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.17
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.09
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.26
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.24
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.0
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.86
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.82
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.27

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.8e-25  Score=198.94  Aligned_cols=320  Identities=26%  Similarity=0.338  Sum_probs=194.3

Q ss_pred             cccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCccccc
Q 043347           29 NLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLK  108 (385)
Q Consensus        29 ~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~  108 (385)
                      .+.+++ +|+++++.|+ .+. ++ ..+++|++|++++|.+++..  .+.++++|++|++++|.+.+.  ..++++++|+
T Consensus        42 ~l~~l~-~L~l~~~~I~-~l~-gl-~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i--~~l~~l~~L~  113 (384)
T d2omza2          42 DLDQVT-TLQADRLGIK-SID-GV-EYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI--TPLANLTNLT  113 (384)
T ss_dssp             HHTTCC-EEECCSSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred             HhCCCC-EEECCCCCCC-Ccc-cc-ccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccccc--cccccccccc
Confidence            344444 4666666555 332 22 24556666666666555321  255556666666666655422  2355556666


Q ss_pred             EEEeecccccCCCCcccCCCcCCcEEEecccccccc-------------------cCccccCCCCCcEEEccCCcccccC
Q 043347          109 LLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGF-------------------IPDTIFNMSTLKTLSLLNNTLSGNL  169 (385)
Q Consensus       109 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------------------~~~~~~~l~~L~~l~l~~~~~~~~~  169 (385)
                      .+++.++.+.+..  .......+.......+.+...                   ....+...+.........+...   
T Consensus       114 ~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  188 (384)
T d2omza2         114 GLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS---  188 (384)
T ss_dssp             EEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC---
T ss_pred             ccccccccccccc--cccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc---
Confidence            6666555443221  112222333333332222111                   0111222233333333333222   


Q ss_pred             CCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhh
Q 043347          170 PSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSL  249 (385)
Q Consensus       170 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  249 (385)
                       .......+++++.+.++.+.+.+..+  ...+++++++++++|.+++.  ..+..+++|+.+++++|.++...      
T Consensus       189 -~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~------  257 (384)
T d2omza2         189 -DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA------  257 (384)
T ss_dssp             -CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG------
T ss_pred             -cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC------
Confidence             11225567788888888887764332  45567888888888887743  35677888888888888877542      


Q ss_pred             hHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccC
Q 043347          250 FSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRL  329 (385)
Q Consensus       250 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  329 (385)
                        .+..+++|+.++++++.+.+..+  +... ..++.+.+.+|++.+  ...+..++++++|++++|.+.+. + .+..+
T Consensus       258 --~~~~~~~L~~L~l~~~~l~~~~~--~~~~-~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l  328 (384)
T d2omza2         258 --PLSGLTKLTELKLGANQISNISP--LAGL-TALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI-S-PVSSL  328 (384)
T ss_dssp             --GGTTCTTCSEEECCSSCCCCCGG--GTTC-TTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCC-G-GGGGC
T ss_pred             --cccccccCCEeeccCcccCCCCc--cccc-ccccccccccccccc--ccccchhcccCeEECCCCCCCCC-c-ccccC
Confidence              46677888888888887765432  3333 677888888887764  23467788888999998888743 2 37788


Q ss_pred             CCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccccccCccccC
Q 043347          330 KKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILSL  385 (385)
Q Consensus       330 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~i  385 (385)
                      ++|++|++++|++++ ++ .+..+++|++|++++|++++..|  +.++++|+.|+|
T Consensus       329 ~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L  380 (384)
T d2omza2         329 TKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL  380 (384)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEC
T ss_pred             CCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeC
Confidence            889999999988874 33 57788899999999888886554  678888888764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=1.8e-23  Score=185.89  Aligned_cols=323  Identities=27%  Similarity=0.338  Sum_probs=244.2

Q ss_pred             CcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCc
Q 043347            5 NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELS   84 (385)
Q Consensus         5 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~   84 (385)
                      .+.+|++|+++++.+++ + ..+..+++++ +|++++|+++ .+++  +..+++|++|++++|.+.+..  .+..+++|+
T Consensus        42 ~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~-~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~  113 (384)
T d2omza2          42 DLDQVTTLQADRLGIKS-I-DGVEYLNNLT-QINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLT  113 (384)
T ss_dssp             HHTTCCEEECCSSCCCC-C-TTGGGCTTCC-EEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCC
T ss_pred             HhCCCCEEECCCCCCCC-c-cccccCCCCC-EEeCcCCcCC-CCcc--ccCCccccccccccccccccc--ccccccccc
Confidence            46789999999999973 3 5788899999 7999999999 6764  558999999999999987442  478999999


Q ss_pred             EEecccccccccCCCCccCcccccEEEeecccccCCC-------------------CcccCCCcCCcEEEeccccccccc
Q 043347           85 RVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEI-------------------PQEIGSLRNLEILRIDQNNLVGFI  145 (385)
Q Consensus        85 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-------------------~~~~~~l~~L~~L~l~~~~~~~~~  145 (385)
                      .|+++++.+.+..  .......+.......+.+....                   ...+.............+..  ..
T Consensus       114 ~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  189 (384)
T d2omza2         114 GLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV--SD  189 (384)
T ss_dssp             EEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC--CC
T ss_pred             ccccccccccccc--cccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccc--cc
Confidence            9999998776332  2334455555555544432211                   11122223333333333322  22


Q ss_pred             CccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccC
Q 043347          146 PDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQ  225 (385)
Q Consensus       146 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  225 (385)
                      ......+++++.+.++++.+.+..+    ....++|++++++++.+++  ...+..+++++.+++++|.+.+..  .+..
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~~~----~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~~  261 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA--PLSG  261 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTT
T ss_pred             ccccccccccceeeccCCccCCCCc----ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCC--cccc
Confidence            3456678999999999998775433    4467899999999998874  345788899999999999987543  4778


Q ss_pred             CCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCC
Q 043347          226 LRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNL  305 (385)
Q Consensus       226 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~  305 (385)
                      +++|+.++++++.+...        ..+..++.++.+.+..|.+.+.  ..+... ++++.|++++|++.+..  .+..+
T Consensus       262 ~~~L~~L~l~~~~l~~~--------~~~~~~~~l~~l~~~~n~l~~~--~~~~~~-~~l~~L~ls~n~l~~l~--~l~~l  328 (384)
T d2omza2         262 LTKLTELKLGANQISNI--------SPLAGLTALTNLELNENQLEDI--SPISNL-KNLTYLTLYFNNISDIS--PVSSL  328 (384)
T ss_dssp             CTTCSEEECCSSCCCCC--------GGGTTCTTCSEEECCSSCCSCC--GGGGGC-TTCSEEECCSSCCSCCG--GGGGC
T ss_pred             cccCCEeeccCcccCCC--------Cccccccccccccccccccccc--cccchh-cccCeEECCCCCCCCCc--ccccC
Confidence            89999999999988764        3467888999999999988753  234444 79999999999998543  37889


Q ss_pred             CCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCC
Q 043347          306 INLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRN  364 (385)
Q Consensus       306 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  364 (385)
                      ++|++|++++|.+++ ++ .+..+++|++|++++|++++..|  +.++++|++|+|++|
T Consensus       329 ~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         329 TKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            999999999999984 44 58899999999999999986543  788999999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=5.3e-24  Score=183.11  Aligned_cols=286  Identities=21%  Similarity=0.218  Sum_probs=174.1

Q ss_pred             cccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEec
Q 043347           58 RLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRID  137 (385)
Q Consensus        58 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  137 (385)
                      ..+.++-++..++ .+|..+.  +++++|++++|.+....+..|.++++|++|++.+|.+....+..|..+++|+.|+++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            3455666666665 3444442  567777777777764333467777777777777777776666667777777777777


Q ss_pred             ccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccc
Q 043347          138 QNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSG  217 (385)
Q Consensus       138 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  217 (385)
                      +|+++.. +..  ....++.++...+.+....+  ..+.....+..+....+...                      ...
T Consensus        88 ~n~l~~l-~~~--~~~~l~~L~~~~n~l~~l~~--~~~~~~~~~~~l~~~~n~~~----------------------~~~  140 (305)
T d1xkua_          88 KNQLKEL-PEK--MPKTLQELRVHENEITKVRK--SVFNGLNQMIVVELGTNPLK----------------------SSG  140 (305)
T ss_dssp             SSCCSBC-CSS--CCTTCCEEECCSSCCCBBCH--HHHTTCTTCCEEECCSSCCC----------------------GGG
T ss_pred             CCccCcC-ccc--hhhhhhhhhccccchhhhhh--hhhhcccccccccccccccc----------------------ccC
Confidence            7776533 221  23455666665555442211  11223333334433333211                      111


Q ss_pred             cCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCC
Q 043347          218 LIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGR  297 (385)
Q Consensus       218 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~  297 (385)
                      .....+..+++|+.++++++.+...+.         ..+++++.|++++|......+..+... +.++.|.+++|.+.+.
T Consensus       141 ~~~~~~~~l~~L~~l~l~~n~l~~l~~---------~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~L~~s~n~l~~~  210 (305)
T d1xkua_         141 IENGAFQGMKKLSYIRIADTNITTIPQ---------GLPPSLTELHLDGNKITKVDAASLKGL-NNLAKLGLSFNSISAV  210 (305)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCCSCCS---------SCCTTCSEEECTTSCCCEECTGGGTTC-TTCCEEECCSSCCCEE
T ss_pred             CCccccccccccCccccccCCccccCc---------ccCCccCEEECCCCcCCCCChhHhhcc-cccccccccccccccc
Confidence            122334445555555555555443321         113456666666665555555444444 5667777777777666


Q ss_pred             CCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhh------hcCCCccEEEccCCccc--cc
Q 043347          298 IPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEF------CHFSRLYKFYLNRNKLS--GS  369 (385)
Q Consensus       298 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~--~~  369 (385)
                      .+.++..+++|++|++++|+++ .+|..+..+++|+.|++++|+++......|      ...++|+.|++++|++.  .+
T Consensus       211 ~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~  289 (305)
T d1xkua_         211 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI  289 (305)
T ss_dssp             CTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGS
T ss_pred             ccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcC
Confidence            6677788889999999999887 567788888999999999998885444333      34688999999999875  34


Q ss_pred             CCCcccccccCcccc
Q 043347          370 IPSCLGDLNSLRILS  384 (385)
Q Consensus       370 ~~~~~~~l~~L~~l~  384 (385)
                      .|.+|..+....++.
T Consensus       290 ~~~~f~~~~~~~~~~  304 (305)
T d1xkua_         290 QPSTFRCVYVRAAVQ  304 (305)
T ss_dssp             CGGGGTTCCCGGGEE
T ss_pred             CHhHhcccccCcccc
Confidence            567777666555543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=3.5e-23  Score=177.92  Aligned_cols=266  Identities=21%  Similarity=0.264  Sum_probs=154.5

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecc
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFN  115 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  115 (385)
                      .++.++.+++ ++|..+.   +++++|++++|.++......|..+++|++|+++++.+....+..+.++++|++|++.+|
T Consensus        14 ~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          14 VVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             EEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             EEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            5777777777 7777553   56777888887777555556777778888888877777555667777888888888777


Q ss_pred             cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC
Q 043347          116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI  195 (385)
Q Consensus       116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  195 (385)
                      ++. .+|..  ..+.++.+.+.++.+.......+.....+..+....+...........+..++.|+.+++..+.+....
T Consensus        90 ~l~-~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~  166 (305)
T d1xkua_          90 QLK-ELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP  166 (305)
T ss_dssp             CCS-BCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred             ccC-cCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC
Confidence            766 33332  235677777777777655555555666677777666543322212223445556666666555544221


Q ss_pred             CcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCC
Q 043347          196 PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPS  275 (385)
Q Consensus       196 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  275 (385)
                      ..   .++++++|++++|......+..+..++.++.|++++|.+..                              ..+.
T Consensus       167 ~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~------------------------------~~~~  213 (305)
T d1xkua_         167 QG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA------------------------------VDNG  213 (305)
T ss_dssp             SS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE------------------------------ECTT
T ss_pred             cc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccc------------------------------cccc
Confidence            11   13445555555554444444444444555555555544443                              3333


Q ss_pred             cccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCcccc------ccCCCCCeEeccCCccc
Q 043347          276 SIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITL------GRLKKLQGLDLQNNKFE  343 (385)
Q Consensus       276 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~  343 (385)
                      .+..+ +++++|++++|++. .+|.++..+++|++|++++|+++......|      ...++|+.|++++|++.
T Consensus       214 ~~~~l-~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         214 SLANT-PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TGGGS-TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccc-ccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            33333 44555555555544 234456666777777777776663322222      33566777777777653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=1.2e-24  Score=187.93  Aligned_cols=251  Identities=28%  Similarity=0.375  Sum_probs=191.2

Q ss_pred             cccccEEEeecccccC--CCCcccCCCcCCcEEEecc-cccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCC
Q 043347          104 STKLKLLYLSFNNLIG--EIPQEIGSLRNLEILRIDQ-NNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPN  180 (385)
Q Consensus       104 l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~  180 (385)
                      ..+++.|++.++.+.+  .+|..++++++|++|++++ |.+...+|..+.++++|++|++++|.+.+..+..  +..+..
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~--~~~~~~  126 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF--LSQIKT  126 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG--GGGCTT
T ss_pred             cEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccccc--ccchhh
Confidence            3478899999988765  4788899999999999987 6777778888999999999999999887654433  667888


Q ss_pred             CceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCc-cEEEecCCcccccchhhhhhhHhhhcccCc
Q 043347          181 LEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNL-ERLGLQSNYLTSSTSELMSLFSALVNCKSL  259 (385)
Q Consensus       181 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L  259 (385)
                      |+.++++.|......+..+..++.++.+++++|.+.+..+..+..+..+ +.+.+++|++.....      ..+..+.. 
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~------~~~~~l~~-  199 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP------PTFANLNL-  199 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC------GGGGGCCC-
T ss_pred             hcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccc------cccccccc-
Confidence            9999999888887778888889999999999988876667777666665 778888887765432      23444433 


Q ss_pred             eEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccC
Q 043347          260 KVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQN  339 (385)
Q Consensus       260 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  339 (385)
                      ..+++..+...+..+...... .+++.+.+.++.+.+..+ .+..+++|+.|++++|++++.+|..+..+++|++|++++
T Consensus       200 ~~l~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~  277 (313)
T d1ogqa_         200 AFVDLSRNMLEGDASVLFGSD-KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             SEEECCSSEEEECCGGGCCTT-SCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             ccccccccccccccccccccc-cccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcC
Confidence            357777777766666665555 677888888887765443 466677888888888888777777788888888888888


Q ss_pred             CcccCCChhhhhcCCCccEEEccCCcc
Q 043347          340 NKFEGPIPHEFCHFSRLYKFYLNRNKL  366 (385)
Q Consensus       340 ~~~~~~~~~~~~~~~~L~~L~l~~~~~  366 (385)
                      |++++.+|+ +.++++|+.+++++|+.
T Consensus       278 N~l~g~iP~-~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         278 NNLCGEIPQ-GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             SEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred             CcccccCCC-cccCCCCCHHHhCCCcc
Confidence            888766663 45677777788887763

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=5.8e-25  Score=189.86  Aligned_cols=246  Identities=28%  Similarity=0.409  Sum_probs=154.8

Q ss_pred             eeEeecCcccc--CCChhhhcCCCcccEEEccC-CcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEe
Q 043347           36 GLDFSNNSLTG--SFPDDMCEGLPRLKGLYVSY-NQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYL  112 (385)
Q Consensus        36 ~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  112 (385)
                      .|+++++.+.+  .+|..+. ++++|++|++++ |.+.+.+|..|.++++|++|++++|.+.+..+..+..+..|+++++
T Consensus        54 ~L~L~~~~l~g~~~lp~~l~-~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l  132 (313)
T d1ogqa_          54 NLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF  132 (313)
T ss_dssp             EEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred             EEECCCCCCCCCCCCChHHh-cCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccc
Confidence            56777666654  3555554 677777777765 5566666666777777777777777666555666666677777777


Q ss_pred             ecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCC-cEEEccCCcccccCCCCcccCCCCCCceEEcccccc
Q 043347          113 SFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTL-KTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNF  191 (385)
Q Consensus       113 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  191 (385)
                      ..|......|..+..++.++.+++++|.+....|..+..+..+ +.+++++|.+.+..+..  +..+. ...+++..+..
T Consensus       133 ~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~--~~~l~-~~~l~l~~~~~  209 (313)
T d1ogqa_         133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT--FANLN-LAFVDLSRNML  209 (313)
T ss_dssp             CSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG--GGGCC-CSEEECCSSEE
T ss_pred             ccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccc--ccccc-ccccccccccc
Confidence            7766666666667777777777777776665566666665554 56666666665544332  22232 33566666655


Q ss_pred             CCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCC
Q 043347          192 SGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDG  271 (385)
Q Consensus       192 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  271 (385)
                      ....+..+..+++++.+++.++.+.... ..+..+++|+.|++++|++++.      ++..++.+++|++|++++|.+++
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~------iP~~l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGT------LPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEEC------CCGGGGGCTTCCEEECCSSEEEE
T ss_pred             cccccccccccccccccccccccccccc-cccccccccccccCccCeeccc------CChHHhCCCCCCEEECcCCcccc
Confidence            5555666666677777777777665443 3456667777777777776643      23456667777777777777766


Q ss_pred             CCCCcccccccceeEEEeecccc
Q 043347          272 VLPSSIGNLSVSVEEIYMYKCNI  294 (385)
Q Consensus       272 ~~~~~~~~~~~~l~~L~l~~~~~  294 (385)
                      ..|. ...+ .+++.+++.+|+.
T Consensus       283 ~iP~-~~~L-~~L~~l~l~~N~~  303 (313)
T d1ogqa_         283 EIPQ-GGNL-QRFDVSAYANNKC  303 (313)
T ss_dssp             ECCC-STTG-GGSCGGGTCSSSE
T ss_pred             cCCC-cccC-CCCCHHHhCCCcc
Confidence            6654 2333 5666666777664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.4e-22  Score=172.02  Aligned_cols=222  Identities=23%  Similarity=0.233  Sum_probs=121.3

Q ss_pred             eEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeec-c
Q 043347           37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSF-N  115 (385)
Q Consensus        37 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~  115 (385)
                      ++.++.+++ ++|..+.   +++++|++++|.+++..+..|..+++|++|+++++.+....+..+..++.++.+.... +
T Consensus        16 v~c~~~~L~-~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEcCCCCCC-ccCCCCC---CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            444444555 5555432   3455556666555544444555555666666655555544444455555555554432 2


Q ss_pred             cccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCC
Q 043347          116 NLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSI  195 (385)
Q Consensus       116 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  195 (385)
                      .+....+..+..+++|+.|+++++.+.......+...++|+.+++++|.+....+.  .+...++|++|++++|.+....
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~--~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD--TFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChh--HhccccchhhcccccCcccccc
Confidence            33333344455555666666655555444444445555566666665555432221  1445555666666666555444


Q ss_pred             CcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCC
Q 043347          196 PSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVD  270 (385)
Q Consensus       196 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  270 (385)
                      +..+..+++|+.+++++|++....+..|..+++|+.|++++|.+...+.      ..+..+++|+.|++++|++.
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~------~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT------EALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH------HHHTTCTTCCEEECCSSCEE
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccc------cccccccccCEEEecCCCCC
Confidence            5555666666666666666655555666666666666666666655432      34555666666666666554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.4e-21  Score=165.92  Aligned_cols=225  Identities=23%  Similarity=0.236  Sum_probs=193.3

Q ss_pred             EEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecc-
Q 043347           11 VLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLS-   89 (385)
Q Consensus        11 ~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-   89 (385)
                      .++.++..++ .+|..+.  ..++ +|++++|+++ .+|...+.++++|++++++++.+.......+..+..++.+.+. 
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~-~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQ-RIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCS-EEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCC-EEECcCCcCC-CCCHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            4566677776 7777653  3344 8999999999 8998888899999999999999998888888889999999876 


Q ss_pred             cccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccC
Q 043347           90 FNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNL  169 (385)
Q Consensus        90 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~  169 (385)
                      .+.+....+..+.++++|++|++.+|.+....+..+....+|+.+++.+|.++...+..+..+++|+.|++++|.+....
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence            44555555778999999999999999987666777888999999999999998777788889999999999999987554


Q ss_pred             CCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCccccc
Q 043347          170 PSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSS  242 (385)
Q Consensus       170 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  242 (385)
                      +.  .+..+++|+.+.+..|.+....+..|..++++++|++++|.+....+..++.+++|+.|++++|.+...
T Consensus       170 ~~--~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         170 ER--AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             TT--TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             hh--hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            43  377899999999999999877788999999999999999999988888899999999999999987753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.2e-20  Score=154.92  Aligned_cols=195  Identities=25%  Similarity=0.224  Sum_probs=109.0

Q ss_pred             eEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeeccc
Q 043347           37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNN  116 (385)
Q Consensus        37 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  116 (385)
                      ++.+++.++ .+|.++.   +++++|++++|.+++..+..|..+++|++|++++|.+.. ++ .+..+++|++|++++|+
T Consensus        15 v~C~~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~   88 (266)
T d1p9ag_          15 VNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQ   88 (266)
T ss_dssp             EECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSC
T ss_pred             EEccCCCCC-eeCcCcC---cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccccc
Confidence            455555555 4554332   345555555555544444445555555555555555442 22 23345555555555555


Q ss_pred             ccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCC
Q 043347          117 LIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIP  196 (385)
Q Consensus       117 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  196 (385)
                      +. ..+..+..+++|+.|+++++.+....+..+..+.+++.+++.+|.+....+.  .+..++.++.+++++|.++...+
T Consensus        89 l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~--~~~~l~~l~~l~l~~N~l~~~~~  165 (266)
T d1p9ag_          89 LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG--LLTPTPKLEKLSLANNNLTELPA  165 (266)
T ss_dssp             CS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCSCCCT
T ss_pred             cc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccc--cccccccchhcccccccccccCc
Confidence            54 3344455555555555555555544444555556666666666555432221  14456666666666666665556


Q ss_pred             cccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccc
Q 043347          197 SFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTS  241 (385)
Q Consensus       197 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  241 (385)
                      ..+..+++|++|++++|+++. .+..+..+++|+.|++++|.+..
T Consensus       166 ~~~~~l~~L~~L~Ls~N~L~~-lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         166 GLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cccccccccceeecccCCCcc-cChhHCCCCCCCEEEecCCCCCC
Confidence            666677777777777777763 44455567778888888776653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.7e-20  Score=154.61  Aligned_cols=201  Identities=26%  Similarity=0.267  Sum_probs=146.7

Q ss_pred             CcCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCc
Q 043347            5 NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELS   84 (385)
Q Consensus         5 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~   84 (385)
                      +..++.+++.+++.++ .+|..+.  ++++ .|++++|.++ .++...+..+++|++|++++|.++.. + .+..+++|+
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~-~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~   80 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP--KDTT-ILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLG   80 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCC-EEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCC
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC--cCCC-EEECcCCcCC-CcCHHHhhcccccccccccccccccc-c-ccccccccc
Confidence            3455666777777777 5776553  3444 7888888887 77777777788888888888877633 2 346778888


Q ss_pred             EEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCc
Q 043347           85 RVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNT  164 (385)
Q Consensus        85 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~  164 (385)
                      +|++++|.+. ..+..+.++++|++|+++++.+....+..+..+.+++.+++.+|.+....+..+..++.++.+++++|.
T Consensus        81 ~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence            8888888776 456677778888888888887776666667778888888888888776666667778888888888887


Q ss_pred             ccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCcccc
Q 043347          165 LSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFS  216 (385)
Q Consensus       165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  216 (385)
                      +....+..  +..+++|++|++++|.++ .++..+..+++|+.|++++|.+.
T Consensus       160 l~~~~~~~--~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         160 LTELPAGL--LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CSCCCTTT--TTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccCccc--cccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            76543322  667788888888888877 45555556778888888887664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=3.9e-18  Score=149.09  Aligned_cols=312  Identities=26%  Similarity=0.293  Sum_probs=191.4

Q ss_pred             CcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCC-CCCcE
Q 043347            7 AELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHC-KELSR   85 (385)
Q Consensus         7 ~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~   85 (385)
                      .++++|+++++.++ .+|+.   .++++ +|++++|+++ .+|.    ...+|+.|++.+|.++.. .    .+ +.|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~-~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~~l-~----~lp~~L~~  102 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLE-SLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKAL-S----DLPPLLEY  102 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCS-EEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCC-C----SCCTTCCE
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCC-EEECCCCCCc-cccc----chhhhhhhhhhhcccchh-h----hhcccccc
Confidence            35778888888877 66653   34555 6888888888 7775    345788888888876522 2    22 35888


Q ss_pred             EecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcc
Q 043347           86 VSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTL  165 (385)
Q Consensus        86 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~  165 (385)
                      |++++|.+. .+| .+..+++|++|++.++.+. ..+.   ....+..+.+..+...  ....+..++.++.+.+.++..
T Consensus       103 L~L~~n~l~-~lp-~~~~l~~L~~L~l~~~~~~-~~~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         103 LGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             EECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCC
T ss_pred             ccccccccc-ccc-chhhhccceeecccccccc-cccc---ccccccchhhcccccc--ccccccccccceecccccccc
Confidence            888888776 444 3567788888888777665 2222   2345666666555443  223456677788888777665


Q ss_pred             cccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchh
Q 043347          166 SGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSE  245 (385)
Q Consensus       166 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  245 (385)
                      ... +.     .....+.+.........  ...+..++.++.+++++|..... +   ....++..+.+..+.+..... 
T Consensus       175 ~~~-~~-----~~~~~~~l~~~~~~~~~--~~~~~~l~~L~~l~l~~n~~~~~-~---~~~~~l~~~~~~~~~~~~~~~-  241 (353)
T d1jl5a_         175 KKL-PD-----LPLSLESIVAGNNILEE--LPELQNLPFLTTIYADNNLLKTL-P---DLPPSLEALNVRDNYLTDLPE-  241 (353)
T ss_dssp             SSC-CC-----CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSC-C---SCCTTCCEEECCSSCCSCCCC-
T ss_pred             ccc-cc-----ccccccccccccccccc--ccccccccccccccccccccccc-c---ccccccccccccccccccccc-
Confidence            422 11     11223444444443331  22345677788888887765432 2   234566777777766554321 


Q ss_pred             hhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccc
Q 043347          246 LMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPIT  325 (385)
Q Consensus       246 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  325 (385)
                               ..+.+....+..+...+.     ...........+..+.+.    .....+++|++|++++|.+. .+|. 
T Consensus       242 ---------~~~~l~~~~~~~~~~~~l-----~~l~~~~~~~~~~~~~~~----~~~~~~~~L~~L~Ls~N~l~-~lp~-  301 (353)
T d1jl5a_         242 ---------LPQSLTFLDVSENIFSGL-----SELPPNLYYLNASSNEIR----SLCDLPPSLEELNVSNNKLI-ELPA-  301 (353)
T ss_dssp             ---------CCTTCCEEECCSSCCSEE-----SCCCTTCCEEECCSSCCS----EECCCCTTCCEEECCSSCCS-CCCC-
T ss_pred             ---------cccccccccccccccccc-----ccccchhcccccccCccc----cccccCCCCCEEECCCCccC-cccc-
Confidence                     123455555554433321     112233444455544443    22334679999999999988 5554 


Q ss_pred             cccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccccccCc
Q 043347          326 LGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLR  381 (385)
Q Consensus       326 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~  381 (385)
                        .+++|+.|++++|+++ .+|+.   +++|++|++++|+++ .+|.....++.|+
T Consensus       302 --~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~~L~~L~  350 (353)
T d1jl5a_         302 --LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPESVEDLR  350 (353)
T ss_dssp             --CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCTTCCEEE
T ss_pred             --ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccccccCeeE
Confidence              3678999999999998 45532   568999999999987 6676544454443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.4e-17  Score=135.93  Aligned_cols=183  Identities=25%  Similarity=0.335  Sum_probs=94.5

Q ss_pred             CCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccC
Q 043347          179 PNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKS  258 (385)
Q Consensus       179 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  258 (385)
                      .+|+.|++.++++.+.  ..+..+++|++|++++|.+.+..  .+..+++++.++++++.++..        ..+..+++
T Consensus        41 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--------~~l~~l~~  108 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--------SAIAGLQS  108 (227)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--------GGGTTCTT
T ss_pred             CCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--------cccccccc
Confidence            3444444444444321  12344455555555555444321  244455555555555544432        22444555


Q ss_pred             ceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEecc
Q 043347          259 LKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQ  338 (385)
Q Consensus       259 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  338 (385)
                      |+.++++++...+..+  +... +.+..+.+.++.+...  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|+++
T Consensus       109 L~~l~l~~~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls  181 (227)
T d1h6ua2         109 IKTLDLTSTQITDVTP--LAGL-SNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKAD  181 (227)
T ss_dssp             CCEEECTTSCCCCCGG--GTTC-TTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred             ccccccccccccccch--hccc-cchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccC
Confidence            5555555554432211  1111 4555556655555422  2245566677777777766522  235666777777777


Q ss_pred             CCcccCCChhhhhcCCCccEEEccCCcccccCCCcccccccCcccc
Q 043347          339 NNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILS  384 (385)
Q Consensus       339 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~  384 (385)
                      +|++++ ++ .++.+++|++|++++|++++..+  +.++++|+.|+
T Consensus       182 ~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~  223 (227)
T d1h6ua2         182 DNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT  223 (227)
T ss_dssp             SSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEE
T ss_pred             CCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEE
Confidence            777663 22 25667777777777777664332  56666666664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.4e-21  Score=174.97  Aligned_cols=112  Identities=19%  Similarity=0.145  Sum_probs=77.9

Q ss_pred             CcccEEEecCccccCCC-CcccccccceeceeEeecCccccCCC---hhhhcCCCcccEEEccCCcccCc----CCCCcc
Q 043347            7 AELEVLVLNNNLLTGTI-PASIFNLSSISTGLDFSNNSLTGSFP---DDMCEGLPRLKGLYVSYNQFKGP----IPNNLW   78 (385)
Q Consensus         7 ~~l~~L~l~~~~~~~~~-~~~~~~~~~l~~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~   78 (385)
                      .+|++|+++++++.+.- ..-+..+++++ .|++++|.+++.-.   ..++..+++|++|++++|.+...    +...+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~-~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQ-VVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCS-EEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCC-EEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            46899999999987532 33355667777 69999998873221   12345789999999999987532    122222


Q ss_pred             -CCCCCcEEeccccccccc----CCCCccCcccccEEEeecccccC
Q 043347           79 -HCKELSRVSLSFNQFTGR----IPRDLGNSTKLKLLYLSFNNLIG  119 (385)
Q Consensus        79 -~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~  119 (385)
                       ...+|++|++++|.+.+.    ++..+..+++|++|++++|.+.+
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence             235799999999987643    23456778999999999887653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.6e-17  Score=133.80  Aligned_cols=219  Identities=18%  Similarity=0.137  Sum_probs=96.2

Q ss_pred             cEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCc-CCCCccCCCCCcEEec
Q 043347           10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGP-IPNNLWHCKELSRVSL   88 (385)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l   88 (385)
                      +.++.++..++ .+|..+.  .+++ +|++++|.++ .+|...|.++++|++|++++|.+... .+..|..++.++++.+
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~-~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAI-ELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCS-EEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCC-EEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            34455544444 4444332  1233 4555555555 45554444555555555555544322 2334445555555554


Q ss_pred             cc-ccccccCCCCccCcccccEEEeecccccCCCCc-ccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCccc
Q 043347           89 SF-NQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQ-EIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLS  166 (385)
Q Consensus        89 ~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~  166 (385)
                      .. +.+....+..+.++++|+++++.++.+....+. .+..+..+..+...++.+.......+..++             
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~-------------  152 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-------------  152 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB-------------
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccc-------------
Confidence            32 233333344455555555555555544322111 112223333333333333322222232222             


Q ss_pred             ccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEE-EccCccccccCcccccCCCCccEEEecCCcccccchh
Q 043347          167 GNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYL-ELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSE  245 (385)
Q Consensus       167 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  245 (385)
                                  ..++.+++..+.++......+. ..++.++ .+.+|.++......|.++++|+.|++++|+++.++. 
T Consensus       153 ------------~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-  218 (242)
T d1xwdc1         153 ------------FESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-  218 (242)
T ss_dssp             ------------SSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCS-
T ss_pred             ------------ccceeeeccccccccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCH-
Confidence                        2344455554444422222222 2333333 344455554444455666666666666666655432 


Q ss_pred             hhhhhHhhhcccCceEEEcc
Q 043347          246 LMSLFSALVNCKSLKVIVLA  265 (385)
Q Consensus       246 ~~~~~~~~~~~~~L~~L~l~  265 (385)
                           ..+.++++|+.+++.
T Consensus       219 -----~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         219 -----YGLENLKKLRARSTY  233 (242)
T ss_dssp             -----SSCTTCCEEESSSEE
T ss_pred             -----HHHcCCcccccCcCC
Confidence                 234445555544443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.7e-20  Score=170.36  Aligned_cols=334  Identities=19%  Similarity=0.154  Sum_probs=177.3

Q ss_pred             ceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCc----CCCCccCCCCCcEEecccccccccC----CCCcc-
Q 043347           32 SISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGP----IPNNLWHCKELSRVSLSFNQFTGRI----PRDLG-  102 (385)
Q Consensus        32 ~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~-  102 (385)
                      +++ .|+++++++++..-..++..++++++|++++|.++..    ++..+..+++|++|++++|.+.+..    ...+. 
T Consensus         3 ~l~-~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQ-SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEE-EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCC-EEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            455 7999999998544345566789999999999988732    3445678999999999999875321    22232 


Q ss_pred             CcccccEEEeecccccCC----CCcccCCCcCCcEEEecccccccccCccc-----------------------------
Q 043347          103 NSTKLKLLYLSFNNLIGE----IPQEIGSLRNLEILRIDQNNLVGFIPDTI-----------------------------  149 (385)
Q Consensus       103 ~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----------------------------  149 (385)
                      ...+|++|++++|.+++.    ++..+..+++|++|++++|.+.......+                             
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            345899999999988653    34557789999999999987653211111                             


Q ss_pred             ----cCCCCCcEEEccCCcccccC--CCCcc-cCCCCCCceEEccccccCCC----CCcccccCCcccEEEccCcccccc
Q 043347          150 ----FNMSTLKTLSLLNNTLSGNL--PSSKK-LIGLPNLEGLILGLNNFSGS----IPSFFFNASKLYYLELAYNSFSGL  218 (385)
Q Consensus       150 ----~~l~~L~~l~l~~~~~~~~~--~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~  218 (385)
                          .....++.+.++.+......  ..... .........+.+..+.....    ....+...+.++.+.+.++.....
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence                11234455555444322100  00000 00112233444444433211    111223445566666666544221


Q ss_pred             -----CcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcc----cccccceeEEEe
Q 043347          219 -----IPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSI----GNLSVSVEEIYM  289 (385)
Q Consensus       219 -----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~l~~L~l  289 (385)
                           ..........++.+++++|.+.....  ......+...+.++.+++++|.+.+.....+    ......++.+.+
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~--~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l  319 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGC--GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV  319 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHH--HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             ccchhhccccccccccccccccccccccccc--ccccccccccccccccccccccccccccchhhccccccccccccccc
Confidence                 11222344566666666665543221  1123344555666666666665543211111    111134566666


Q ss_pred             eccccCCCCCccc----cCCCCccEEECcCccccCC----Cccccc-cCCCCCeEeccCCcccCCC----hhhhhcCCCc
Q 043347          290 YKCNIHGRIPKEI----GNLINLTKLSLGYNNLSGS----LPITLG-RLKKLQGLDLQNNKFEGPI----PHEFCHFSRL  356 (385)
Q Consensus       290 ~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~----~~~~~~-~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L  356 (385)
                      ++|.+.......+    ...++|++|++++|.+.+.    +.+.+. ..+.|+.|++++|.+++..    ...+..+++|
T Consensus       320 ~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L  399 (460)
T d1z7xw1         320 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL  399 (460)
T ss_dssp             TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred             cccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCC
Confidence            6665543322222    2334566666666655432    122222 2345666666666655322    2233345666


Q ss_pred             cEEEccCCcccc
Q 043347          357 YKFYLNRNKLSG  368 (385)
Q Consensus       357 ~~L~l~~~~~~~  368 (385)
                      ++|++++|+++.
T Consensus       400 ~~L~Ls~N~i~~  411 (460)
T d1z7xw1         400 RELDLSNNCLGD  411 (460)
T ss_dssp             CEEECCSSSCCH
T ss_pred             CEEECCCCcCCH
Confidence            666666666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=3e-17  Score=133.97  Aligned_cols=203  Identities=25%  Similarity=0.293  Sum_probs=140.7

Q ss_pred             eEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeeccc
Q 043347           37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNN  116 (385)
Q Consensus        37 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  116 (385)
                      +++..++++|.++.   ..+.+|++|++.+|.++. + ..+..+++|++|++++|.+.+.  ..+..+++|+++++.+|.
T Consensus        24 ~~l~~~~~~d~~~~---~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~--~~l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          24 IAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNP   96 (227)
T ss_dssp             HHTTCSSTTSEECH---HHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCC--GGGTTCCSCCEEECCSCC
T ss_pred             HHhCCCCcCCcCCH---HHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecc--cccccccccccccccccc
Confidence            55566666633221   245677888888887763 3 3577788888888888877633  237778888888888777


Q ss_pred             ccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCC
Q 043347          117 LIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIP  196 (385)
Q Consensus       117 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  196 (385)
                      ++. + ..+..+++|+.++++++.....  ..+...+.++.+.++.+.+...    ..+...++|+++.+.++.+...  
T Consensus        97 ~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~--  166 (227)
T d1h6ua2          97 LKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI----SPLAGLTNLQYLSIGNAQVSDL--  166 (227)
T ss_dssp             CSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC----GGGGGCTTCCEEECCSSCCCCC--
T ss_pred             ccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchh----hhhccccccccccccccccccc--
Confidence            652 2 3467788888888877765432  3455677788888877765432    2255677888888888876532  


Q ss_pred             cccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccC
Q 043347          197 SFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAE  266 (385)
Q Consensus       197 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  266 (385)
                      ..+..+++|++|++++|++++.  ..+..+++|+.|++++|++++.+        .+.++++|+.|++++
T Consensus       167 ~~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--------~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         167 TPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS--------PLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG--------GGTTCTTCCEEEEEE
T ss_pred             hhhcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCc--------ccccCCCCCEEEeeC
Confidence            3367788888999988887753  23778888999999988887642        367888888888863

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.70  E-value=3.1e-14  Score=123.91  Aligned_cols=296  Identities=24%  Similarity=0.286  Sum_probs=196.8

Q ss_pred             cCcccEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcE
Q 043347            6 LAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSR   85 (385)
Q Consensus         6 ~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   85 (385)
                      .++|++|++++|.++ .+|..+   .+++ .|++++++++ .++.    -.+.|++|++++|.+.. ++ .+..+++|++
T Consensus        57 ~~~L~~L~Ls~N~l~-~lp~~~---~~L~-~L~l~~n~l~-~l~~----lp~~L~~L~L~~n~l~~-lp-~~~~l~~L~~  124 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-ELPELP---QSLK-SLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKI  124 (353)
T ss_dssp             CTTCSEEECCSSCCS-SCCCCC---TTCC-EEECCSSCCS-CCCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred             CCCCCEEECCCCCCc-ccccch---hhhh-hhhhhhcccc-hhhh----hcccccccccccccccc-cc-chhhhcccee
Confidence            468999999999998 777654   4566 7999999988 6653    13569999999999873 34 4678999999


Q ss_pred             EecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcc
Q 043347           86 VSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTL  165 (385)
Q Consensus        86 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~  165 (385)
                      |+++++.+. ..+..   ...+..+.+..+...  ....+..++.++.+.+.++......    ......+.+.......
T Consensus       125 L~l~~~~~~-~~~~~---~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~~----~~~~~~~~l~~~~~~~  194 (353)
T d1jl5a_         125 IDVDNNSLK-KLPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLP----DLPLSLESIVAGNNIL  194 (353)
T ss_dssp             EECCSSCCS-CCCCC---CTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCC
T ss_pred             ecccccccc-ccccc---cccccchhhcccccc--ccccccccccceecccccccccccc----cccccccccccccccc
Confidence            999998776 33333   456677777665443  3445778899999999888765321    1223344555554443


Q ss_pred             cccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchh
Q 043347          166 SGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSE  245 (385)
Q Consensus       166 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  245 (385)
                      . ..+.   ...++.++.+.++.+..... +   ....++..+.+.++.+... +   ...+.++..++..+....... 
T Consensus       195 ~-~~~~---~~~l~~L~~l~l~~n~~~~~-~---~~~~~l~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~l~~-  261 (353)
T d1jl5a_         195 E-ELPE---LQNLPFLTTIYADNNLLKTL-P---DLPPSLEALNVRDNYLTDL-P---ELPQSLTFLDVSENIFSGLSE-  261 (353)
T ss_dssp             S-SCCC---CTTCTTCCEEECCSSCCSSC-C---SCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSEESC-
T ss_pred             c-cccc---cccccccccccccccccccc-c---ccccccccccccccccccc-c---ccccccccccccccccccccc-
Confidence            3 2222   45788899999988765522 2   2345677788877766532 1   224566666666554433211 


Q ss_pred             hhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccc
Q 043347          246 LMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPIT  325 (385)
Q Consensus       246 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  325 (385)
                               -.......++..+.+.+.     ...++++++|++++|++.. +|.   .+++|+.|++++|.++ .+|+ 
T Consensus       262 ---------l~~~~~~~~~~~~~~~~~-----~~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L~-~l~~-  321 (353)
T d1jl5a_         262 ---------LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLA-EVPE-  321 (353)
T ss_dssp             ---------CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC-
T ss_pred             ---------ccchhcccccccCccccc-----cccCCCCCEEECCCCccCc-ccc---ccCCCCEEECCCCcCC-cccc-
Confidence                     012334455555544432     2234789999999998873 443   3678999999999988 5554 


Q ss_pred             cccCCCCCeEeccCCcccCCChhhhhcCCCccEEEcc
Q 043347          326 LGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLN  362 (385)
Q Consensus       326 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  362 (385)
                        .+++|++|++++|+++ .+|..   ..+|+.|.+.
T Consensus       322 --~~~~L~~L~L~~N~L~-~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         322 --LPQNLKQLHVEYNPLR-EFPDI---PESVEDLRMN  352 (353)
T ss_dssp             --CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECC
T ss_pred             --ccCCCCEEECcCCcCC-CCCcc---ccccCeeECc
Confidence              3568999999999987 55542   3467888775

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.5e-16  Score=129.90  Aligned_cols=104  Identities=20%  Similarity=0.275  Sum_probs=48.5

Q ss_pred             EEEeecccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccc
Q 043347          109 LLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGL  188 (385)
Q Consensus       109 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  188 (385)
                      .++..+..++ .+|..+.  +++++|++++|.++...+..|.++++|+++++++|.+...++. ..+..++.++++.+..
T Consensus        12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~-~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECS-SSEESCTTCCEEEEEC
T ss_pred             EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeec-cccccccccccccccc
Confidence            4444444443 3333322  3455555555555543334455555555555555544332221 1244455555554432


Q ss_pred             -cccCCCCCcccccCCcccEEEccCcccc
Q 043347          189 -NNFSGSIPSFFFNASKLYYLELAYNSFS  216 (385)
Q Consensus       189 -~~~~~~~~~~~~~~~~L~~L~l~~~~~~  216 (385)
                       +.+....+..+..+++|+++++.++.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccccccccccccccccccccccchhhhc
Confidence             2233233344555556666666555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.4e-17  Score=140.52  Aligned_cols=256  Identities=17%  Similarity=0.161  Sum_probs=159.1

Q ss_pred             cEEEeecccccCCCCcccCCC--cCCcEEEecccccccccCccccCCCCCcEEEccCCcccccCCCCcccCCCCCCceEE
Q 043347          108 KLLYLSFNNLIGEIPQEIGSL--RNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLI  185 (385)
Q Consensus       108 ~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~  185 (385)
                      +.++++++.+.   |+.+...  .....+.+........ ........+|++++++++.+...... ..+..+++|++|+
T Consensus         3 ~~lDLs~~~l~---~~~l~~l~~~~~~~lrl~~~~~~~~-~~~~~~~~~L~~LdLs~~~i~~~~l~-~l~~~c~~L~~L~   77 (284)
T d2astb2           3 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSVIEVSTLH-GILSQCSKLQNLS   77 (284)
T ss_dssp             SEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSC-CCSCCCCBCCCEEECTTCEECHHHHH-HHHTTBCCCSEEE
T ss_pred             CEEECCCCCCC---chHHHHHHhccceEeeccccccccc-hhhhccCCCCCEEECCCCccCHHHHH-HHHHhCCCccccc
Confidence            35677765442   2222211  1344555554443322 12233456899999998876532111 1266788999999


Q ss_pred             ccccccCCCCCcccccCCcccEEEccCc-cccccCc-ccccCCCCccEEEecCCc-ccccchhhhhhhHhhh-cccCceE
Q 043347          186 LGLNNFSGSIPSFFFNASKLYYLELAYN-SFSGLIP-KALGQLRNLERLGLQSNY-LTSSTSELMSLFSALV-NCKSLKV  261 (385)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~-~~~~L~~  261 (385)
                      ++++.+.+.....+..+++|++|++++| .+++... .....+++|+.|++++|. +++..     ....+. .++.|+.
T Consensus        78 L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~-----~~~~~~~~~~~L~~  152 (284)
T d2astb2          78 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH-----VQVAVAHVSETITQ  152 (284)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH-----HHHHHHHSCTTCCE
T ss_pred             ccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccccccccccc-----chhhhcccccccch
Confidence            9998876555566778889999999885 3543322 223567899999998864 33211     112233 3578999


Q ss_pred             EEccCCC--CCCCCCCcccccccceeEEEeeccc-cCCCCCccccCCCCccEEECcCc-cccCCCccccccCCCCCeEec
Q 043347          262 IVLAENP--VDGVLPSSIGNLSVSVEEIYMYKCN-IHGRIPKEIGNLINLTKLSLGYN-NLSGSLPITLGRLKKLQGLDL  337 (385)
Q Consensus       262 L~l~~~~--~~~~~~~~~~~~~~~l~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l  337 (385)
                      |+++++.  +++.....+....+++++|++++|. +++.....+..+++|++|++++| .+++.....+..+++|+.|++
T Consensus       153 L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l  232 (284)
T d2astb2         153 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV  232 (284)
T ss_dssp             EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             hhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEee
Confidence            9998752  3333222333334789999998875 45456666778889999999986 566555566778899999999


Q ss_pred             cCCcccCCChhhh-hcCCCccEEEccCCcccccCCCccccc
Q 043347          338 QNNKFEGPIPHEF-CHFSRLYKFYLNRNKLSGSIPSCLGDL  377 (385)
Q Consensus       338 ~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l  377 (385)
                      .+| +++.....+ ..+|+|+   +..++++.+.+..+++.
T Consensus       233 ~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~~  269 (284)
T d2astb2         233 FGI-VPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNK  269 (284)
T ss_dssp             TTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSST
T ss_pred             eCC-CCHHHHHHHHHhCcccc---ccCccCCCCCCCccCcc
Confidence            888 444444444 3477765   45556776665555443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.3e-17  Score=139.15  Aligned_cols=254  Identities=17%  Similarity=0.132  Sum_probs=149.6

Q ss_pred             cEEecccccccccCCCCccCc--ccccEEEeecccccCCCCcccCCCcCCcEEEecccccccc-cCccccCCCCCcEEEc
Q 043347           84 SRVSLSFNQFTGRIPRDLGNS--TKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNLVGF-IPDTIFNMSTLKTLSL  160 (385)
Q Consensus        84 ~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l  160 (385)
                      +.+|++++.+..   +.+..+  .....+.+.+...... ........+|++|+++++.+... ....+..+++|++|++
T Consensus         3 ~~lDLs~~~l~~---~~l~~l~~~~~~~lrl~~~~~~~~-~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L   78 (284)
T d2astb2           3 QTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL   78 (284)
T ss_dssp             SEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSC-CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             CEEECCCCCCCc---hHHHHHHhccceEeeccccccccc-hhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccc
Confidence            367777765432   122111  1234555555444322 22233456888999888876543 2344667888999998


Q ss_pred             cCCcccccCCCCcccCCCCCCceEEccccc-cCCC-CCcccccCCcccEEEccCcc-ccccCc-ccc-cCCCCccEEEec
Q 043347          161 LNNTLSGNLPSSKKLIGLPNLEGLILGLNN-FSGS-IPSFFFNASKLYYLELAYNS-FSGLIP-KAL-GQLRNLERLGLQ  235 (385)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~~-~~~~~L~~L~l~  235 (385)
                      +++.+.+....  .+..+++|++|+++++. +++. .......+++|++|++++|. +++... ..+ ..+++|+.|+++
T Consensus        79 ~~~~l~~~~~~--~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~  156 (284)
T d2astb2          79 EGLRLSDPIVN--TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  156 (284)
T ss_dssp             TTCBCCHHHHH--HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             cccCCCcHHHH--HHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhc
Confidence            88876543222  25567888999888863 3321 12234567889999988864 332211 122 234788888888


Q ss_pred             CCcccccchhhhhhhHhhhcccCceEEEccCCC-CCCCCCCcccccccceeEEEeeccc-cCCCCCccccCCCCccEEEC
Q 043347          236 SNYLTSSTSELMSLFSALVNCKSLKVIVLAENP-VDGVLPSSIGNLSVSVEEIYMYKCN-IHGRIPKEIGNLINLTKLSL  313 (385)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l  313 (385)
                      ++... ..+..  +.....++++|+.|++++|. +++.....+... +++++|++++|. +++.....++.+|+|++|++
T Consensus       157 ~~~~~-i~~~~--l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~-~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l  232 (284)
T d2astb2         157 GYRKN-LQKSD--LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV  232 (284)
T ss_dssp             SCGGG-SCHHH--HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC-TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             ccccc-ccccc--ccccccccccccccccccccCCCchhhhhhccc-CcCCEEECCCCCCCChHHHHHHhcCCCCCEEee
Confidence            75321 11111  22344668889999998864 666666666665 789999998874 55445556778888999998


Q ss_pred             cCccccCCCccccccCCCCCeEeccCCcccCCChhhh
Q 043347          314 GYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEF  350 (385)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  350 (385)
                      +++.-.+........+|+|+   ++.+.+++..++.+
T Consensus       233 ~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~  266 (284)
T d2astb2         233 FGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTI  266 (284)
T ss_dssp             TTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSC
T ss_pred             eCCCCHHHHHHHHHhCcccc---ccCccCCCCCCCcc
Confidence            88722222222223455544   45556665444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.5e-15  Score=120.78  Aligned_cols=161  Identities=24%  Similarity=0.375  Sum_probs=102.3

Q ss_pred             CCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccc
Q 043347          202 ASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLS  281 (385)
Q Consensus       202 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  281 (385)
                      ++++++|+++++++...  ..++.+++|+.|++++|.+++..        .+.++++|+.|++++|.+....  .+... 
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--------~l~~l~~L~~L~l~~n~~~~~~--~l~~l-  105 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--------PLKNLTKLVDILMNNNQIADIT--PLANL-  105 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--------GGTTCTTCCEEECCSSCCCCCG--GGTTC-
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--------cccCCccccccccccccccccc--ccccc-
Confidence            44555666655555432  22455566666666666555431        2455666666666666554322  13333 


Q ss_pred             cceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEc
Q 043347          282 VSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYL  361 (385)
Q Consensus       282 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  361 (385)
                      +.++.+++++|.....  ..+..+++|+.|++++|.+.. . ..+..+++|+.|++.+|++++. + .+.++++|+.|++
T Consensus       106 ~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~l  179 (199)
T d2omxa2         106 TNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDI  179 (199)
T ss_dssp             TTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEEC
T ss_pred             cccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-c-cccCCCCCCEEEC
Confidence            5666777766665432  236677888888888888763 3 3577788888888888888743 2 3677888999999


Q ss_pred             cCCcccccCCCcccccccCccc
Q 043347          362 NRNKLSGSIPSCLGDLNSLRIL  383 (385)
Q Consensus       362 ~~~~~~~~~~~~~~~l~~L~~l  383 (385)
                      ++|++++. + .+.++++|+.|
T Consensus       180 s~N~i~~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         180 SSNKVSDI-S-VLAKLTNLESL  199 (199)
T ss_dssp             CSSCCCCC-G-GGGGCTTCSEE
T ss_pred             CCCCCCCC-c-cccCCCCCCcC
Confidence            98888753 3 46777777764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.5e-15  Score=121.94  Aligned_cols=162  Identities=26%  Similarity=0.381  Sum_probs=78.7

Q ss_pred             CCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhccc
Q 043347          178 LPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCK  257 (385)
Q Consensus       178 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  257 (385)
                      +..|++|++.++.+....  .+..+++|++|++++|++++..  .++.+++|+.|++++|.+++.        ..+..++
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l--------~~l~~l~  112 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL--------SSLKDLK  112 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG--------GGGTTCT
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc--------ccccccc
Confidence            345566666665554322  2455566666666666555322  244555666666666655432        2344555


Q ss_pred             CceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEec
Q 043347          258 SLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDL  337 (385)
Q Consensus       258 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  337 (385)
                      +|+.|++++|.+...                           ..+..++.++.+++++|.+.+  +..+..+++|+.+++
T Consensus       113 ~L~~L~l~~~~~~~~---------------------------~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l  163 (210)
T d1h6ta2         113 KLKSLSLEHNGISDI---------------------------NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSL  163 (210)
T ss_dssp             TCCEEECTTSCCCCC---------------------------GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEEC
T ss_pred             ccccccccccccccc---------------------------ccccccccccccccccccccc--ccccccccccccccc
Confidence            555555555544321                           123444455555555555442  122344455555555


Q ss_pred             cCCcccCCChhhhhcCCCccEEEccCCcccccCCCcccccccCcccc
Q 043347          338 QNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGSIPSCLGDLNSLRILS  384 (385)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~  384 (385)
                      ++|++++. + .+..+++|++|++++|++++ ++ .+.++++|+.|+
T Consensus       164 ~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~  206 (210)
T d1h6ta2         164 EDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLE  206 (210)
T ss_dssp             CSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEE
T ss_pred             cccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEE
Confidence            55555422 1 14445555555555555542 22 244455555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=4.3e-15  Score=119.17  Aligned_cols=165  Identities=25%  Similarity=0.336  Sum_probs=118.7

Q ss_pred             CCCCCcEEEccCCcccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcccccCCCCcc
Q 043347          151 NMSTLKTLSLLNNTLSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPKALGQLRNLE  230 (385)
Q Consensus       151 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  230 (385)
                      .+.+|+.++++++.+... +   .+..+++|++|++++|.+++..  .++.+++|+.|++++|++++.  ..+..+++|+
T Consensus        44 ~L~~L~~L~l~~~~i~~l-~---~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~  115 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV-Q---GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL--SSLKDLKKLK  115 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC-T---TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG--GGGTTCTTCC
T ss_pred             HhcCccEEECcCCCCCCc-h---hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc--cccccccccc
Confidence            467899999999988643 2   2668999999999999987533  357889999999999998854  3578899999


Q ss_pred             EEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccE
Q 043347          231 RLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTK  310 (385)
Q Consensus       231 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~  310 (385)
                      .++++++.+...        ..+..++.++.+++++|.+.+..                           .+..+++|+.
T Consensus       116 ~L~l~~~~~~~~--------~~l~~l~~l~~l~~~~n~l~~~~---------------------------~~~~l~~L~~  160 (210)
T d1h6ta2         116 SLSLEHNGISDI--------NGLVHLPQLESLYLGNNKITDIT---------------------------VLSRLTKLDT  160 (210)
T ss_dssp             EEECTTSCCCCC--------GGGGGCTTCCEEECCSSCCCCCG---------------------------GGGGCTTCSE
T ss_pred             cccccccccccc--------ccccccccccccccccccccccc---------------------------cccccccccc
Confidence            999999987653        35677888888888887665321                           1234556666


Q ss_pred             EECcCccccCCCccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEcc
Q 043347          311 LSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLN  362 (385)
Q Consensus       311 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  362 (385)
                      +++++|.+.+ ++ .+..+++|+.|++++|++++ ++ .+..+++|+.|+++
T Consensus       161 l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         161 LSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             EECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             cccccccccc-cc-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            6666666653 22 25566667777777776653 33 45666677777665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=2.9e-16  Score=124.27  Aligned_cols=128  Identities=23%  Similarity=0.241  Sum_probs=65.6

Q ss_pred             cEEEecCccccCCCCcccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecc
Q 043347           10 EVLVLNNNLLTGTIPASIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLS   89 (385)
Q Consensus        10 ~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~   89 (385)
                      ++++.+++.++ .+|..+.  .+++ +|++++|.|+..++...|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~-~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTT-ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCS-EEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCC-EEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            44555555554 4444432  2233 455555555433444444455555555555555554455555555555555555


Q ss_pred             cccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEeccccc
Q 043347           90 FNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQNNL  141 (385)
Q Consensus        90 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  141 (385)
                      +|.+....+..|.++++|++|++++|.+....+.+|..+++|+++++++|.+
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            5555544444455555555555555555544444455555555555555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=3.5e-15  Score=118.68  Aligned_cols=118  Identities=25%  Similarity=0.334  Sum_probs=58.1

Q ss_pred             eEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeeccc
Q 043347           37 LDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNN  116 (385)
Q Consensus        37 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  116 (385)
                      ..++.+.+++.++.   ..++++++|+++++.+.. + ..+..+++|++|++++|.+.+.  ..+.++++|++|++++|.
T Consensus        23 ~~l~~~~~~~~~~~---~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~--~~l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          23 TVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HHTTCSSTTSEECH---HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             HHhCCCCCCCccCH---HHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCc--ccccCCcccccccccccc
Confidence            34445555432222   134566666666666552 1 2355566666666666655422  125556666666666555


Q ss_pred             ccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCcc
Q 043347          117 LIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTL  165 (385)
Q Consensus       117 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~  165 (385)
                      +. .++ .+..+++|+.++++++.....  ..+..+++|+.+++++|.+
T Consensus        96 ~~-~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l  140 (199)
T d2omxa2          96 IA-DIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTI  140 (199)
T ss_dssp             CC-CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCC
T ss_pred             cc-ccc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhh
Confidence            43 222 245555555555555544321  2233444444554444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.56  E-value=1.1e-14  Score=114.94  Aligned_cols=127  Identities=20%  Similarity=0.292  Sum_probs=100.1

Q ss_pred             eeEeecCccccCCChhhhcCCCcccEEEccCCcccC-cCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeec
Q 043347           36 GLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKG-PIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSF  114 (385)
Q Consensus        36 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  114 (385)
                      .++.++++++ ++|.++.   +++++|++++|.+++ .....|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus        12 ~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            5888888888 8887663   578888998888865 3456677888888888888888766677788888888888888


Q ss_pred             ccccCCCCcccCCCcCCcEEEecccccccccCccccCCCCCcEEEccCCccc
Q 043347          115 NNLIGEIPQEIGSLRNLEILRIDQNNLVGFIPDTIFNMSTLKTLSLLNNTLS  166 (385)
Q Consensus       115 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~  166 (385)
                      |++....+.+|..+++|++|++++|.++...+..|..+++|+++++++|.+.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            8888666777888888888888888887776777777777777777776653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.4e-14  Score=109.18  Aligned_cols=128  Identities=15%  Similarity=0.053  Sum_probs=66.4

Q ss_pred             ccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccc
Q 043347          223 LGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEI  302 (385)
Q Consensus       223 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~  302 (385)
                      +..+..+++|++++|.++..+.       .+..+++|+.|++++|.+...  +.+..+ +++++|++++|++.+..+..+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~-------~~~~l~~L~~L~Ls~N~i~~l--~~~~~l-~~L~~L~ls~N~i~~l~~~~~   83 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIEN-------LGATLDQFDAIDFSDNEIRKL--DGFPLL-RRLKTLLVNNNRICRIGEGLD   83 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-------GGGGTTCCSEEECCSSCCCEE--CCCCCC-SSCCEEECCSSCCCEECSCHH
T ss_pred             ccCcCcCcEEECCCCCCCccCc-------cccccccCCEEECCCCCCCcc--CCcccC-cchhhhhcccccccCCCcccc
Confidence            4455667777777777665432       234556677777777666533  123333 455555666555554333334


Q ss_pred             cCCCCccEEECcCccccCCC-ccccccCCCCCeEeccCCcccCCC---hhhhhcCCCccEEE
Q 043347          303 GNLINLTKLSLGYNNLSGSL-PITLGRLKKLQGLDLQNNKFEGPI---PHEFCHFSRLYKFY  360 (385)
Q Consensus       303 ~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~  360 (385)
                      ..+++|++|++++|.+.... ...+..+++|++|++++|+++...   +..+..+|+|+.||
T Consensus        84 ~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          84 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            44555555555555554211 123445555555555555554221   12344455555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.48  E-value=6.8e-15  Score=127.69  Aligned_cols=245  Identities=18%  Similarity=0.142  Sum_probs=129.8

Q ss_pred             CCccCcccccEEEeecccccCC----CCcccCCCcCCcEEEecccccccc----------cCccccCCCCCcEEEccCCc
Q 043347           99 RDLGNSTKLKLLYLSFNNLIGE----IPQEIGSLRNLEILRIDQNNLVGF----------IPDTIFNMSTLKTLSLLNNT  164 (385)
Q Consensus        99 ~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----------~~~~~~~l~~L~~l~l~~~~  164 (385)
                      ..+.....|++|++++|.+...    +...+...++|+.++++++.....          +...+..+++|+.|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            3445567777777777765432    222344566777777765543211          11112234455555555444


Q ss_pred             ccccCCCCcccCCCCCCceEEccccccCCCCCcccccCCcccEEEccCccccccCcc-------------cccCCCCccE
Q 043347          165 LSGNLPSSKKLIGLPNLEGLILGLNNFSGSIPSFFFNASKLYYLELAYNSFSGLIPK-------------ALGQLRNLER  231 (385)
Q Consensus       165 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------------~~~~~~~L~~  231 (385)
                      +......                      .+...+..+++|++|++++|.+......             .....+.|+.
T Consensus       105 i~~~~~~----------------------~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~  162 (344)
T d2ca6a1         105 FGPTAQE----------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS  162 (344)
T ss_dssp             CCTTTHH----------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred             ccccccc----------------------chhhhhcccccchheecccccccccccccccccccccccccccccCcccce
Confidence            3211000                      0112223345555555555543221100             0123456666


Q ss_pred             EEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCC-----CCcccccccceeEEEeeccccCCC----CCccc
Q 043347          232 LGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVL-----PSSIGNLSVSVEEIYMYKCNIHGR----IPKEI  302 (385)
Q Consensus       232 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~~l~~L~l~~~~~~~~----~~~~~  302 (385)
                      +.++++.+.....  ..+...+..++.++.|++++|.+....     ...+... ++++.|++++|.+...    +...+
T Consensus       163 l~l~~n~i~~~~~--~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~-~~L~~L~Ls~N~i~~~g~~~L~~~l  239 (344)
T d2ca6a1         163 IICGRNRLENGSM--KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIAL  239 (344)
T ss_dssp             EECCSSCCTGGGH--HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred             eeccccccccccc--ccccchhhhhhhhcccccccccccccccccchhhhhcch-hhhcccccccccccccccccccccc
Confidence            6666665543222  223345556667777777766654321     1112222 5677777777665432    23445


Q ss_pred             cCCCCccEEECcCccccCCCc----ccccc--CCCCCeEeccCCcccCCCh----hhhh-cCCCccEEEccCCcccc
Q 043347          303 GNLINLTKLSLGYNNLSGSLP----ITLGR--LKKLQGLDLQNNKFEGPIP----HEFC-HFSRLYKFYLNRNKLSG  368 (385)
Q Consensus       303 ~~~~~L~~L~l~~~~~~~~~~----~~~~~--~~~L~~L~l~~~~~~~~~~----~~~~-~~~~L~~L~l~~~~~~~  368 (385)
                      ..+++|++|++++|.+.+...    ..+..  .++|+.|++++|+++....    ..+. ++++|+.|++++|++..
T Consensus       240 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             cccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            677888888988888764322    22322  4578899999888764332    2332 47788999999888753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2e-14  Score=109.66  Aligned_cols=130  Identities=16%  Similarity=0.143  Sum_probs=94.6

Q ss_pred             ccccccceeceeEeecCccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcc
Q 043347           26 SIFNLSSISTGLDFSNNSLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNST  105 (385)
Q Consensus        26 ~~~~~~~l~~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  105 (385)
                      .+.+...++ +|++++|+|+ .++ +.+..+++|++|++++|.+...  ..+..+++|++|++++|.+....+..+..++
T Consensus        13 ~~~n~~~lr-~L~L~~n~I~-~i~-~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          13 QYTNAVRDR-ELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   87 (162)
T ss_dssp             EEECTTSCE-EEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             hccCcCcCc-EEECCCCCCC-ccC-ccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccc
Confidence            344666677 6888888888 776 3445788888888888888733  3577888888999988888744444456788


Q ss_pred             cccEEEeecccccCCC-CcccCCCcCCcEEEeccccccccc---CccccCCCCCcEEEc
Q 043347          106 KLKLLYLSFNNLIGEI-PQEIGSLRNLEILRIDQNNLVGFI---PDTIFNMSTLKTLSL  160 (385)
Q Consensus       106 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~l~l  160 (385)
                      +|++|++.+|.+.+.. ...+..+++|+++++.+|.+....   ...+..+++|+.|+-
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            8999999888876432 135778888999999888876432   124667888888873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=6e-13  Score=96.32  Aligned_cols=103  Identities=22%  Similarity=0.292  Sum_probs=65.0

Q ss_pred             EEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCccccccCCCCCeEeccCC
Q 043347          261 VIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNN  340 (385)
Q Consensus       261 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  340 (385)
                      .|++++|.++.. + .+..+ .++++|++++|++. .+|..++.+++|+.|++++|.+++ ++ .+..+++|+.|++++|
T Consensus         2 ~L~Ls~n~l~~l-~-~l~~l-~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           2 VLHLAHKDLTVL-C-HLEQL-LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             EEECTTSCCSSC-C-CGGGG-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             EEEcCCCCCCCC-c-ccccC-CCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            455555555422 1 23333 45666666666665 344556677777788888777763 33 4677777888888888


Q ss_pred             cccCCC-hhhhhcCCCccEEEccCCccccc
Q 043347          341 KFEGPI-PHEFCHFSRLYKFYLNRNKLSGS  369 (385)
Q Consensus       341 ~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~  369 (385)
                      ++.+.. ...+..+++|+.|++++|+++..
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            776432 24566777888888888777643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.42  E-value=6e-15  Score=128.04  Aligned_cols=145  Identities=22%  Similarity=0.282  Sum_probs=87.9

Q ss_pred             CCCCCceEEccccccCCC----CCcccccCCcccEEEccCcccccc-----CcccccCCCCccEEEecCCcccccchhhh
Q 043347          177 GLPNLEGLILGLNNFSGS----IPSFFFNASKLYYLELAYNSFSGL-----IPKALGQLRNLERLGLQSNYLTSSTSELM  247 (385)
Q Consensus       177 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  247 (385)
                      ..+.|+.+.++.+.+...    +...+..++.++++++++|.+...     ....+..+++|+.|++++|.++..  +..
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~--g~~  233 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL--GSS  233 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH--HHH
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccc--ccc
Confidence            345666666666654421    222345567777888877766432     223456677788888888776543  222


Q ss_pred             hhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCcccc--CCCCccEEECcCccccCC----
Q 043347          248 SLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIG--NLINLTKLSLGYNNLSGS----  321 (385)
Q Consensus       248 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~----  321 (385)
                      .+...+..+++|++|++++|.+.+.....+.                     ..+.  ..+.|++|++++|.+...    
T Consensus       234 ~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~---------------------~~l~~~~~~~L~~L~ls~N~i~~~~~~~  292 (344)
T d2ca6a1         234 ALAIALKSWPNLRELGLNDCLLSARGAAAVV---------------------DAFSKLENIGLQTLRLQYNEIELDAVRT  292 (344)
T ss_dssp             HHHHHGGGCTTCCEEECTTCCCCHHHHHHHH---------------------HHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred             cccccccccccchhhhhhcCccCchhhHHHH---------------------HHhhhccCCCCCEEECCCCcCChHHHHH
Confidence            3445667777788888777766543222221                     1121  235788888888887643    


Q ss_pred             Cccccc-cCCCCCeEeccCCcccC
Q 043347          322 LPITLG-RLKKLQGLDLQNNKFEG  344 (385)
Q Consensus       322 ~~~~~~-~~~~L~~L~l~~~~~~~  344 (385)
                      +...+. .+++|+.|++++|++..
T Consensus       293 l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         293 LKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHccCCCCCEEECCCCcCCC
Confidence            233332 46789999999998874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=1.6e-12  Score=94.09  Aligned_cols=102  Identities=22%  Similarity=0.242  Sum_probs=53.6

Q ss_pred             cEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccCCCcCCcEEEeccc
Q 043347           60 KGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIGSLRNLEILRIDQN  139 (385)
Q Consensus        60 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  139 (385)
                      |+|++++|.++ .++ .+..+++|++|++++|.+. .+|..++.+++|++|++++|.+.. ++ .+..+++|+.+++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            34566666555 222 3555566666666666555 444455556666666666665542 22 3555555566655555


Q ss_pred             cccccc-CccccCCCCCcEEEccCCccc
Q 043347          140 NLVGFI-PDTIFNMSTLKTLSLLNNTLS  166 (385)
Q Consensus       140 ~~~~~~-~~~~~~l~~L~~l~l~~~~~~  166 (385)
                      .+.... ...+..+++|+.+++++|.+.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            554322 133445555555555555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=2.5e-13  Score=107.22  Aligned_cols=126  Identities=21%  Similarity=0.283  Sum_probs=74.7

Q ss_pred             ccEEEccCc--cccccCcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCccccccc
Q 043347          205 LYYLELAYN--SFSGLIPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSV  282 (385)
Q Consensus       205 L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  282 (385)
                      ++.+++.+.  .+. ..+..+..+++|+.|++++|.++..+        .+..+++|+.|++++|.+... +.... ..+
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i~--------~l~~l~~L~~L~Ls~N~i~~i-~~~~~-~~~   93 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKIS--------SLSGMENLRILSLGRNLIKKI-ENLDA-VAD   93 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCCC--------CHHHHTTCCEEECCEEEECSC-SSHHH-HHH
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCCCcc--------cccCCccccChhhcccccccc-ccccc-ccc
Confidence            444555442  122 23345667778888888887776542        356677777788877776532 22222 224


Q ss_pred             ceeEEEeeccccCCCCCccccCCCCccEEECcCccccCCCc-cccccCCCCCeEeccCCccc
Q 043347          283 SVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGSLP-ITLGRLKKLQGLDLQNNKFE  343 (385)
Q Consensus       283 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~  343 (385)
                      +++.|++++|++...  ..+..+++|+.|++++|.+++... ..+..+++|+.|++++|++.
T Consensus        94 ~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_          94 TLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            677777777766532  235566677777777776653211 34566677777777777554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.2e-11  Score=89.76  Aligned_cols=109  Identities=20%  Similarity=0.171  Sum_probs=54.5

Q ss_pred             CcCcccEEEecCccccCCCCcccccccceeceeEeecC-ccccCCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCC
Q 043347            5 NLAELEVLVLNNNLLTGTIPASIFNLSSISTGLDFSNN-SLTGSFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKEL   83 (385)
Q Consensus         5 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~l~~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L   83 (385)
                      .|...++++.+++.+. .+|..+..+++++ +|++.++ .++ .++.+.|..+++|+.|++++|.++...+.+|..+++|
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~-~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L   82 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLT-ELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL   82 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCCS-EEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCccccC-eeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccccccccc
Confidence            3444455555555554 4445555555555 4555443 344 5555555555555555555555554444555555555


Q ss_pred             cEEecccccccccCCCCccCcccccEEEeecccc
Q 043347           84 SRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNL  117 (385)
Q Consensus        84 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  117 (385)
                      ++|++++|.+. .++........|++|++++|++
T Consensus        83 ~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          83 SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred             cceeccCCCCc-ccChhhhccccccccccCCCcc
Confidence            55555555554 2222222222455555555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.17  E-value=2.8e-13  Score=106.93  Aligned_cols=133  Identities=25%  Similarity=0.330  Sum_probs=89.8

Q ss_pred             CCChhhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCCCccCcccccEEEeecccccCCCCcccC
Q 043347           47 SFPDDMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPRDLGNSTKLKLLYLSFNNLIGEIPQEIG  126 (385)
Q Consensus        47 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  126 (385)
                      .++..+ ..+++|++|++++|.++. + ..+..+++|++|++++|.+. .++.....++.|++|++++|.+.. + ..+.
T Consensus        39 ~l~~sl-~~L~~L~~L~Ls~n~I~~-i-~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~  112 (198)
T d1m9la_          39 KMDATL-STLKACKHLALSTNNIEK-I-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIE  112 (198)
T ss_dssp             CCHHHH-HHTTTCCEEECSEEEESC-C-CCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHH
T ss_pred             hhhhHH-hcccccceeECcccCCCC-c-ccccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccc
Confidence            444444 367888888888887763 3 35777888888888888776 444444456678888888887763 2 3466


Q ss_pred             CCcCCcEEEeccccccccc-CccccCCCCCcEEEccCCcccccCCCCc--------ccCCCCCCceEE
Q 043347          127 SLRNLEILRIDQNNLVGFI-PDTIFNMSTLKTLSLLNNTLSGNLPSSK--------KLIGLPNLEGLI  185 (385)
Q Consensus       127 ~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~--------~~~~~~~L~~L~  185 (385)
                      .+++|+.|++++|.+.... ...+..+++|+.|++++|++....+...        .+..+|+|+.|+
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            7788888888888776432 2456778888888888887654333221        134678888875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.4e-10  Score=86.00  Aligned_cols=108  Identities=18%  Similarity=0.193  Sum_probs=61.5

Q ss_pred             CCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCC-CCCCCCCcccccccceeEEEeeccccCCCCCccccCC
Q 043347          227 RNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENP-VDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIGNL  305 (385)
Q Consensus       227 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~  305 (385)
                      ...+.++.+++.+.+.       +..+..++++++|++.++. +....+..+..+ ++|+.|++++|++....+.+|..+
T Consensus         8 ~~~~~l~c~~~~~~~~-------p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l-~~L~~L~Ls~N~l~~i~~~~f~~l   79 (156)
T d2ifga3           8 HGSSGLRCTRDGALDS-------LHHLPGAENLTELYIENQQHLQHLELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFT   79 (156)
T ss_dssp             SSSSCEECCSSCCCTT-------TTTSCSCSCCSEEECCSCSSCCEECGGGSCSC-CCCSEEECCSSCCCEECTTGGGSC
T ss_pred             CCCCeEEecCCCCccC-------cccccCccccCeeecCCCccccccCchhhccc-cccCcceeeccccCCccccccccc
Confidence            3445566666555543       2345556667777776543 554444444444 566666666666665556666666


Q ss_pred             CCccEEECcCccccCCCccccccCCCCCeEeccCCccc
Q 043347          306 INLTKLSLGYNNLSGSLPITLGRLKKLQGLDLQNNKFE  343 (385)
Q Consensus       306 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  343 (385)
                      ++|++|++++|.++ .++.......+|+.|++++|.+.
T Consensus        80 ~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          80 PRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            66666666666666 33333323335666666666653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.26  E-value=4.9e-07  Score=68.32  Aligned_cols=118  Identities=14%  Similarity=0.116  Sum_probs=64.8

Q ss_pred             CCCCccEEEecCC-cccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCcccccccceeEEEeeccccCCCCCcccc
Q 043347          225 QLRNLERLGLQSN-YLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSSIGNLSVSVEEIYMYKCNIHGRIPKEIG  303 (385)
Q Consensus       225 ~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~  303 (385)
                      ..+.|++|+++++ .++  ..++..+..++...+.|++|++++|.+.+.....+                     ...+.
T Consensus        13 n~~~L~~L~L~~~~~i~--~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~l---------------------a~~L~   69 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVS--KERIRSLIEAACNSKHIEKFSLANTAISDSEARGL---------------------IELIE   69 (167)
T ss_dssp             TCSSCCEEECTTCCSSC--HHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTH---------------------HHHHH
T ss_pred             CCCCCcEEEeCCCCCCC--HHHHHHHHHHHhhCCccceeeccccccchhHHHHH---------------------hhhhh
Confidence            4567777777653 232  22333455566677777777777766543322211                     12233


Q ss_pred             CCCCccEEECcCccccCC----CccccccCCCCCeEeccCCcccCC-------ChhhhhcCCCccEEEccCCc
Q 043347          304 NLINLTKLSLGYNNLSGS----LPITLGRLKKLQGLDLQNNKFEGP-------IPHEFCHFSRLYKFYLNRNK  365 (385)
Q Consensus       304 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~  365 (385)
                      ..++|++|++++|.+...    +...+...++|++|++++|.....       +...+...++|++|+++.+.
T Consensus        70 ~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          70 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            445666777776666532    223445556677777766654422       22334446777777776654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.5e-07  Score=70.86  Aligned_cols=67  Identities=22%  Similarity=0.281  Sum_probs=36.9

Q ss_pred             cCCCCccEEECcCccccCC--CccccccCCCCCeEeccCCcccCCChhhhhcCCCccEEEccCCccccc
Q 043347          303 GNLINLTKLSLGYNNLSGS--LPITLGRLKKLQGLDLQNNKFEGPIPHEFCHFSRLYKFYLNRNKLSGS  369 (385)
Q Consensus       303 ~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  369 (385)
                      ..+++|++|++++|+++..  ++..+..+++|+.|++++|.+++..+....+..+|++|++++|+++..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            3456666666666666532  123345566666666666666643332333344566666666666543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.00  E-value=1.9e-06  Score=65.01  Aligned_cols=117  Identities=13%  Similarity=0.139  Sum_probs=65.6

Q ss_pred             CCcccEEEccCc-ccccc----CcccccCCCCccEEEecCCcccccchhhhhhhHhhhcccCceEEEccCCCCCCCCCCc
Q 043347          202 ASKLYYLELAYN-SFSGL----IPKALGQLRNLERLGLQSNYLTSSTSELMSLFSALVNCKSLKVIVLAENPVDGVLPSS  276 (385)
Q Consensus       202 ~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  276 (385)
                      .++|++|+++++ .+.+.    ....+...+.|+.|++++|.+.+.  +...+...+...+.|+.|++++|.+.+.....
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~--~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDS--EARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHH--HHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchh--HHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            466777777653 24322    233455667788888887766532  22234455666777777777777665432221


Q ss_pred             ccccccceeEEEeeccccCCCCCccccCCCCccEEECcCccccCC-------CccccccCCCCCeEeccCCc
Q 043347          277 IGNLSVSVEEIYMYKCNIHGRIPKEIGNLINLTKLSLGYNNLSGS-------LPITLGRLKKLQGLDLQNNK  341 (385)
Q Consensus       277 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~  341 (385)
                      +                     ..++...++|++|++++|.+...       +...+...++|+.|+++.+.
T Consensus        92 l---------------------~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 L---------------------LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             H---------------------HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             H---------------------HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            1                     12234456677777766643311       33344556777777776553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1.4e-06  Score=65.42  Aligned_cols=83  Identities=24%  Similarity=0.195  Sum_probs=59.4

Q ss_pred             cccccceeceeEeecCccccCCCh--hhhcCCCcccEEEccCCcccCcCCCCccCCCCCcEEecccccccccCCC-----
Q 043347           27 IFNLSSISTGLDFSNNSLTGSFPD--DMCEGLPRLKGLYVSYNQFKGPIPNNLWHCKELSRVSLSFNQFTGRIPR-----   99 (385)
Q Consensus        27 ~~~~~~l~~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----   99 (385)
                      ..+++.++ +|++++|+++ .++.  ..+..+++|+.|++++|.+.....-.+.+...|+.|++++|.+......     
T Consensus        61 ~~~~~~L~-~L~Ls~N~i~-~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          61 EENIPELL-SLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHCTTCC-CCCCCSSCCC-CCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHhCCCCC-EeeCCCcccc-CCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            34677888 7999999998 5542  4455789999999999988743332333456789999999988643332     


Q ss_pred             --CccCcccccEEE
Q 043347          100 --DLGNSTKLKLLY  111 (385)
Q Consensus       100 --~l~~l~~L~~L~  111 (385)
                        .+..+|+|++|+
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence              255789999886

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.82  E-value=2.2e-06  Score=64.60  Aligned_cols=46  Identities=15%  Similarity=0.156  Sum_probs=24.2

Q ss_pred             cCCCCccEEEecCC-cccccchhhhhhhHhhhcccCceEEEccCCCCCC
Q 043347          224 GQLRNLERLGLQSN-YLTSSTSELMSLFSALVNCKSLKVIVLAENPVDG  271 (385)
Q Consensus       224 ~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  271 (385)
                      ...+.|+.|+++++ .++  ..++..+..++..+++|+.|++++|.+..
T Consensus        14 ~~~~~L~~L~L~~~~~i~--~~~~~~l~~al~~n~~L~~L~Ls~n~l~~   60 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIP--VPTLKACAEALKTNTYVKKFSIVGTRSND   60 (166)
T ss_dssp             TTCTTCCEEECTTCTTCC--HHHHHHHHHHHTTCCSCCEEECTTSCCCH
T ss_pred             hcCCCCcEEEcCCCCCCC--HHHHHHHHHHHhcCCccCeeeccCCcccH
Confidence            34466666666652 232  22333344555566666666666665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.27  E-value=2.9e-05  Score=58.16  Aligned_cols=89  Identities=15%  Similarity=0.083  Sum_probs=47.1

Q ss_pred             CCCCCceEEccccccCC----CCCcccccCCcccEEEccCcccccc----CcccccCCCCccEEEecC--Ccccccchhh
Q 043347          177 GLPNLEGLILGLNNFSG----SIPSFFFNASKLYYLELAYNSFSGL----IPKALGQLRNLERLGLQS--NYLTSSTSEL  246 (385)
Q Consensus       177 ~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~--~~~~~~~~~~  246 (385)
                      ..++|++|++++|.+..    .....+...++++.++++++.+.+.    ....+...++|+.+++..  +.+.+  .+.
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~--~~~  121 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN--NVE  121 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH--HHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcH--HHH
Confidence            34444555555444331    1223344456677777766665432    224455667777766643  33332  233


Q ss_pred             hhhhHhhhcccCceEEEccCC
Q 043347          247 MSLFSALVNCKSLKVIVLAEN  267 (385)
Q Consensus       247 ~~~~~~~~~~~~L~~L~l~~~  267 (385)
                      .++...+..++.|+.|++..+
T Consensus       122 ~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         122 MEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHhCCCcCEEeCcCC
Confidence            344556667777777777654