Citrus Sinensis ID: 043356

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
MPKKQRKDEGVRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFLNLMDS
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEEccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEEEEcccccEEEEEEcHcccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mpkkqrkdegvrrapkghFVVYVGEEMRRfviplsylkdpTFQKLLEKAAEEYMFSresgivlpcaeSTFRRFLNLMDS
Flexible Loop (DISEMBL)
mpkkqrkdegvrrapkghfvvyvgeEMRRFVIPLSYLKDPTFQKLLEKAAEEYMfsresgivlpcaeSTFRRFLNLMDS
Low Complexity Region (SEG)
MPKKQRKDEGVRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFLNLMDS
Disordered region (IsUnstruct)
****************GHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFLN****
Disordered Region (DISOPRED)
*****************HFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFLNLMDS
Disordered Region (DISEMBL)
*************APKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFLNLMDS
Disordered Region (DISPRO)
**********VRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFLNLMDS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPKKQRKDEGVRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFLNLMDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	79	2.2.26 [Sep-21-2011]
P33082	82	Auxin-induced protein X15	no	no	0.924	0.890	0.445	2e-13
P33081	82	Auxin-induced protein 15A	no	no	0.924	0.890	0.432	7e-13
P33083	90	Auxin-induced protein 6B	no	no	0.797	0.7	0.468	2e-12
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.873	0.75	0.442	3e-12
P33080	92	Auxin-induced protein X10	no	no	0.721	0.619	0.517	8e-12
P33079	93	Auxin-induced protein 10A	no	no	0.708	0.602	0.508	6e-11

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 1/74 (1%)

Query: 6  RKDEGVRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRE-SGIVLP 64
          RK      APKG+  VYVGE+M+RFVIP+SY+  P+FQ LL +A EE+ +     G+ +P
Sbjct: 9  RKASNAVDAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIP 68

Query: 65 CAESTFRRFLNLMD 78
          C+E  F+R    ++
Sbjct: 69 CSEEVFQRITCCLN 82

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 1/74 (1%)

Query: 6  RKDEGVRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRE-SGIVLP 64
          RK      APKG+  VYVGE+++RFVIP+SYL  P+FQ LL +A EE+ +     G+ +P
Sbjct: 9  RKASKAADAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIP 68

Query: 65 CAESTFRRFLNLMD 78
          C+E  F+   + ++
Sbjct: 69 CSEDVFQCITSCLN 82

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 1/64 (1%)

Query: 16 KGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSR-ESGIVLPCAESTFRRFL 74
          KG+  VYVGE+MRRFVIP+SYL  P+FQ LL +A EE+ +     G+ +PC+E  F+   
Sbjct: 27 KGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHIT 86

Query: 75 NLMD 78
          + ++
Sbjct: 87 SFLN 90

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 11 VRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRE-SGIVLPCAEST 69
          V  APKG+  VYVGE M+RFVIP+S+L  P FQ LL +A EE+ +     G+ +PC+E  
Sbjct: 22 VLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDL 81

Query: 70 FRRFLNLMDS 79
          F+   + + +
Sbjct: 82 FQHITSCLSA 91

Vigna radiata var. radiata (taxid: 3916)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 41/58 (70%), Gaps = 1/58 (1%)

Query: 14 APKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRE-SGIVLPCAESTF 70
           PKG+ VVYVG++MRRF+IP+SYL  P+FQ LL +A EE+ +     G+ +PC E  F
Sbjct: 25 VPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEF 82

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 1/57 (1%)

Query: 15 PKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRE-SGIVLPCAESTF 70
          PKG+  VYVG++MRRF IP+SYL +P+FQ+LL +A EE+ +     G+ +PC E  F
Sbjct: 27 PKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEF 83

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
359493164	81	PREDICTED: auxin-induced protein X15-lik	0.974	0.950	0.623	7e-21
224135575	81	SAUR family protein [Populus trichocarpa	0.962	0.938	0.649	1e-20
359480917	80	PREDICTED: auxin-induced protein X15-lik	0.936	0.925	0.608	3e-19
224146373	177	SAUR family protein [Populus trichocarpa	0.683	0.305	0.685	4e-15
351723315	100	uncharacterized protein LOC100305700 [Gl	0.924	0.73	0.438	2e-13
242096948	134	hypothetical protein SORBIDRAFT_10g02906	0.886	0.522	0.479	3e-13
224080550	89	SAUR family protein [Populus trichocarpa	0.721	0.640	0.586	4e-13
356565655	157	PREDICTED: uncharacterized protein LOC10	0.835	0.420	0.5	4e-13
125538051	120	hypothetical protein OsI_05819 [Oryza sa	0.822	0.541	0.507	5e-13
297598579	120	Os02g0143300 [Oryza sativa Japonica Grou	0.822	0.541	0.507	7e-13

>gi|359493164|ref|XP_003634529.1| PREDICTED: auxin-induced protein X15-like [Vitis vinifera]

 Score =  104 bits (259), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 57/77 (74%)

Query: 1  MPKKQRKDEGVRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESG 60
          MPKK   D+  RRAPKGHFVVYVG  M RFV+P SYLK+P FQ+LLEKAA+EY +   + 
Sbjct: 1  MPKKVELDQSRRRAPKGHFVVYVGSRMTRFVVPTSYLKNPVFQQLLEKAADEYGYDSHNR 60

Query: 61 IVLPCAESTFRRFLNLM 77
          IVLPC ESTF+R    +
Sbjct: 61 IVLPCDESTFQRLTTFL 77

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135575|ref|XP_002327252.1| SAUR family protein [Populus trichocarpa] gi|222835622|gb|EEE74057.1| SAUR family protein [Populus trichocarpa]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 58/77 (75%), Gaps = 1/77 (1%)

Query: 1  MPKKQRKDEGVRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESG 60
          MPKK    EG  RAPKGHFVVYVG EM+RFV+P SYLK P FQ+LL+KAAEE+ F  ++G
Sbjct: 1  MPKKVEL-EGRSRAPKGHFVVYVGNEMKRFVVPTSYLKSPIFQQLLDKAAEEFGFDNQNG 59

Query: 61 IVLPCAESTFRRFLNLM 77
          IVLPC ESTF R    +
Sbjct: 60 IVLPCDESTFNRLTAFL 76

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480917|ref|XP_003632542.1| PREDICTED: auxin-induced protein X15-like [Vitis vinifera]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 57/74 (77%)

Query: 4  KQRKDEGVRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVL 63
           ++  E  RRAPKGHFVVYVGEEM+RFV+P+SYLK+P  Q+LL +AAEE+ F  +  IVL
Sbjct: 3  NKQDSETRRRAPKGHFVVYVGEEMKRFVVPISYLKNPMLQQLLAEAAEEFGFDSQKRIVL 62

Query: 64 PCAESTFRRFLNLM 77
          PC ESTF+R  + M
Sbjct: 63 PCDESTFQRITDFM 76

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146373|ref|XP_002325984.1| SAUR family protein [Populus trichocarpa] gi|222862859|gb|EEF00366.1| SAUR family protein [Populus trichocarpa]

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 45/54 (83%)

Query: 18  HFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFR 71
           HFVVYVG EM+RFV+P SYLK+P F +LL+K+AEEY F   +GIVLPC ESTF+
Sbjct: 115 HFVVYVGSEMKRFVVPTSYLKNPVFLQLLDKSAEEYGFDNRNGIVLPCDESTFK 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723315|ref|NP_001235483.1| uncharacterized protein LOC100305700 [Glycine max] gi|356518066|ref|XP_003527705.1| PREDICTED: auxin-induced protein 15A-like [Glycine max] gi|255626351|gb|ACU13520.1| unknown [Glycine max]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 48/73 (65%)

Query: 5  QRKDEGVRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLP 64
          ++ D+G+   PKGHFVVYVGE   R+++P+S+L  P FQ LL +A EE+ F  E G+ +P
Sbjct: 27 RKDDQGLLDVPKGHFVVYVGENRSRYIVPISFLSRPEFQTLLHQAEEEFGFDHEKGLTIP 86

Query: 65 CAESTFRRFLNLM 77
          C E  F    +++
Sbjct: 87 CEEDVFESLTSML 99

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242096948|ref|XP_002438964.1| hypothetical protein SORBIDRAFT_10g029060 [Sorghum bicolor] gi|241917187|gb|EER90331.1| hypothetical protein SORBIDRAFT_10g029060 [Sorghum bicolor]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 3/73 (4%)

Query: 2   PKKQRKDEGVRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGI 61
           P    +D GV   PKG+F VY GEE RRFV+P  YL++P F+ L+E+AA+E+ F++  G+
Sbjct: 49  PAAAEEDGGV---PKGYFAVYAGEESRRFVVPTGYLREPAFRDLMERAADEFGFAQAGGL 105

Query: 62  VLPCAESTFRRFL 74
            +PCAE  F   L
Sbjct: 106 RVPCAEEDFEDLL 118

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080550|ref|XP_002306159.1| SAUR family protein [Populus trichocarpa] gi|222849123|gb|EEE86670.1| SAUR family protein [Populus trichocarpa]

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 14 APKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRE-SGIVLPCAESTF 70
           PKGHFVVYVGE ++RFV+P+SYLK+P+FQKLL    EEY F+    G+ +PC+E  F
Sbjct: 25 VPKGHFVVYVGETLKRFVVPISYLKNPSFQKLLSHVEEEYGFNHPMGGLTIPCSEEVF 82

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565655|ref|XP_003551054.1| PREDICTED: uncharacterized protein LOC100795275 [Glycine max]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 46/66 (69%)

Query: 14  APKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRF 73
            PKG+  VYVG E+RRF+IP +YL  P F+ LLEKAAEE+ F +  G+ +PC   TF+  
Sbjct: 78  VPKGYLAVYVGPELRRFIIPTTYLSHPLFKVLLEKAAEEFGFDQSGGLTIPCEIETFKYL 137

Query: 74  LNLMDS 79
           LN +++
Sbjct: 138 LNCIEN 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125538051|gb|EAY84446.1| hypothetical protein OsI_05819 [Oryza sativa Indica Group]

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 47/65 (72%)

Query: 15  PKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFL 74
           PKG+F VYVG E RRFV+P SYL+ P F+ L+E AA+E+ F++E G+ LPC E  F+  +
Sbjct: 36  PKGYFAVYVGAEARRFVVPTSYLRQPAFRGLMELAADEFGFAQEGGLRLPCREEDFQATV 95

Query: 75  NLMDS 79
             +D+
Sbjct: 96  AALDA 100

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297598579|ref|NP_001045868.2| Os02g0143300 [Oryza sativa Japonica Group] gi|45736189|dbj|BAD13234.1| hypothetical protein [Oryza sativa Japonica Group] gi|125580783|gb|EAZ21714.1| hypothetical protein OsJ_05347 [Oryza sativa Japonica Group] gi|255670597|dbj|BAF07782.2| Os02g0143300 [Oryza sativa Japonica Group]

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 47/65 (72%)

Query: 15  PKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFL 74
           PKG+F VYVG E RRFV+P SYL+ P F+ L+E AA+E+ F++E G+ LPC E  F+  +
Sbjct: 36  PKGYFAVYVGAEARRFVVPTSYLRQPAFRGLMELAADEFGFAQEGGLRLPCREEDFQATV 95

Query: 75  NLMDS 79
             +D+
Sbjct: 96  AALDA 100

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
TAIR|locus:2116885	94	AT4G34800 "AT4G34800" [Arabido	0.898	0.755	0.493	3.8e-14
TAIR|locus:2133757	103	AT4G09530 "AT4G09530" [Arabido	0.848	0.650	0.521	6.2e-14
TAIR|locus:2005709	108	AT1G75580 "AT1G75580" [Arabido	0.797	0.583	0.492	1e-13
TAIR|locus:2155016	99	AT5G66260 "AT5G66260" [Arabido	0.924	0.737	0.452	1.3e-13
TAIR|locus:2057971	124	AT2G37030 "AT2G37030" [Arabido	0.746	0.475	0.576	2.1e-13
TAIR|locus:2047117	104	AT2G21220 "AT2G21220" [Arabido	0.974	0.740	0.417	2.1e-13
TAIR|locus:2139589	107	AT4G34760 "AT4G34760" [Arabido	0.797	0.588	0.444	5.6e-13
TAIR|locus:2180464	190	AT5G20810 "AT5G20810" [Arabido	0.822	0.342	0.476	9.1e-13
TAIR|locus:2013074	117	AT1G19830 "AT1G19830" [Arabido	0.797	0.538	0.476	1.9e-12
TAIR|locus:2047007	98	AT2G21210 "AT2G21210" [Arabido	0.708	0.571	0.559	1.9e-12

TAIR|locus:2116885 AT4G34800 "AT4G34800" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 38/77 (49%), Positives = 50/77 (64%)

Query:     3 KKQRKDEGVRRAPKGHFVVYVGEEM---RRFVIPLSYLKDPTFQKLLEKAAEEYMFSRE- 58
             K+ +K +   R PKGH  VYVGEEM   +RFV+P+SYL  P+FQ LL +A EE+ F+   
Sbjct:    12 KQSQKQQS--RVPKGHVAVYVGEEMESKKRFVVPISYLNHPSFQGLLSRAEEEFGFNHPI 69

Query:    59 SGIVLPCAESTFRRFLN 75
              G+ +PC E TF   LN
Sbjct:    70 GGLTIPCREETFVGLLN 86

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2133757 AT4G09530 "AT4G09530" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 37/71 (52%), Positives = 50/71 (70%)

Query:    13 RAPKGHFVVYVG--EEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSR--ESGIVLPCAES 68
             R P+GHFVVYVG  +++ RFVIP ++LK P+FQKLL+ AAEE+ ++      IVLPC  S
Sbjct:    27 RTPRGHFVVYVGTKKKLERFVIPTTFLKSPSFQKLLDNAAEEFGYAEAHRDKIVLPCDVS 86

Query:    69 TFRRFLNLMDS 79
             TFR  +  + S
Sbjct:    87 TFRSLVMFLTS 97

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2005709 AT1G75580 "AT1G75580" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 31/63 (49%), Positives = 44/63 (69%)

Query:    15 PKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFL 74
             PKGHFVVYVGE   R+V+P+S+L  P FQ LL++A EE+ F  + G+ +PC E  FR   
Sbjct:    45 PKGHFVVYVGENRVRYVVPISFLTRPEFQLLLQQAEEEFGFDHDMGLTIPCEEVVFRSLT 104

Query:    75 NLM 77
             +++
Sbjct:   105 SML 107

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2155016 AT5G66260 "AT5G66260" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 33/73 (45%), Positives = 46/73 (63%)

Query:     3 KKQRKDEGVRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIV 62
             KK   D      PKGHFVVYVG    R VIP+S+L  P FQ LL+++ EE+ F +++G+ 
Sbjct:    23 KKSSVDVNFNGVPKGHFVVYVGHSRSRHVIPISFLTHPIFQMLLQQSEEEFGFFQDNGLT 82

Query:    63 LPCAESTFRRFLN 75
             +PC E  FR  ++
Sbjct:    83 IPCDEHFFRALIS 95

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2057971 AT2G37030 "AT2G37030" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 34/59 (57%), Positives = 43/59 (72%)

Query:    12 RRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTF 70
             R  PKGH VVYVGEE +RFVI ++ LK P FQ LL++A + Y FS +S + +PC ESTF
Sbjct:    47 RDVPKGHLVVYVGEEYKRFVININLLKHPLFQALLDQAQDAYGFSADSRLWIPCNESTF 105

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2047117 AT2G21220 "AT2G21220" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 33/79 (41%), Positives = 52/79 (65%)

Query:     1 MPKKQRKDE-GVR-RAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRE 58
             + K Q  DE G+    PKGHF VYVGE+  R+++P+S+L  P F+ LL++A EE+ F+ +
Sbjct:    25 LAKNQCYDEDGLPVDVPKGHFPVYVGEKRSRYIVPISFLTHPKFKSLLQQAEEEFGFNHD 84

Query:    59 SGIVLPCAESTFRRFLNLM 77
              G+ +PC E  FR   +++
Sbjct:    85 MGLTIPCEEVVFRSLTSMI 103

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2139589 AT4G34760 "AT4G34760" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query:    15 PKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFL 74
             PKGHF VYVGE   R+++P+S+L  P FQ LL++A EE+ F  + G+ +PC E  F+   
Sbjct:    44 PKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTLT 103

Query:    75 NLM 77
             +++
Sbjct:   104 SMI 106

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2180464 AT5G20810 "AT5G20810" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 31/65 (47%), Positives = 42/65 (64%)

Query:    15 PKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFL 74
             PKG+  VYVG E+RRF+IP SYL    F+ LLEKA EE+ F +   + +PC   TF+  L
Sbjct:    80 PKGNLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDQSGALTIPCEVETFKYLL 139

Query:    75 NLMDS 79
               M++
Sbjct:   140 KCMEN 144

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2013074 AT1G19830 "AT1G19830" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 30/63 (47%), Positives = 41/63 (65%)

Query:    15 PKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFL 74
             PKGHFVVYVG    R+V+P+S+L  P FQ LL++A EE+ F    G+ +PC E  F+  +
Sbjct:    49 PKGHFVVYVGGNRVRYVLPISFLTRPEFQLLLQQAEEEFGFDHNMGLTIPCEEVAFKSLI 108

Query:    75 NLM 77
               M
Sbjct:   109 TSM 111

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2047007 AT2G21210 "AT2G21210" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 33/59 (55%), Positives = 39/59 (66%)

Query:    15 PKGHFVVYVGEEM--RRFVIPLSYLKDPTFQKLLEKAAEEYMFSRE-SGIVLPCAESTF 70
             PKGH  VYVGE M  RRFV+P++YL  P FQKLL KA EE+ F     G+ +PC E  F
Sbjct:    29 PKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQKLLRKAEEEFGFDHPMGGLTIPCTEQIF 87

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	79
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	4e-29
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	4e-19
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	2e-13
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	6e-13

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score = 98.9 bits (247), Expect = 4e-29
 Identities = 33/72 (45%), Positives = 45/72 (62%)

Query: 6  RKDEGVRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPC 65
                   PKGHF VYVGEE RRFV+P+SYL  P FQ+LL++A EE+ F ++ G+ +PC
Sbjct: 27 SSKSSSADVPKGHFAVYVGEETRRFVVPISYLNHPLFQELLDRAEEEFGFDQDGGLTIPC 86

Query: 66 AESTFRRFLNLM 77
              F   L ++
Sbjct: 87 DVVVFEHLLWML 98

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 73.6 bits (181), Expect = 4e-19
 Identities = 29/63 (46%), Positives = 43/63 (68%)

Query: 15  PKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFL 74
           PKGHF VYVGE   R+++P+S+L  P FQ LL++A EE+ F  + G+ +PC E  FR   
Sbjct: 41  PKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLT 100

Query: 75  NLM 77
           +++
Sbjct: 101 SMI 103

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 59.8 bits (144), Expect = 2e-13
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 3/59 (5%)

Query: 15 PKGHFVVYVGEEM--RRFVIPLSYLKDPTFQKLLEKAAEEYMFSRE-SGIVLPCAESTF 70
          PKGH  VYVGE+M  +RFV+P+SYL  P F++ L +A EE  F     G+ +PC E +F
Sbjct: 40 PKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESF 98

Length = 108

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 58.2 bits (140), Expect = 6e-13
 Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 5/61 (8%)

Query: 15 PKGHFVVYVGE----EMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRE-SGIVLPCAEST 69
          PKGH  VYVGE    E +RFV+P+S+L  P+F++ L +A EE+ F+    G+ +PC E  
Sbjct: 36 PKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEV 95

Query: 70 F 70
          F
Sbjct: 96 F 96

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	79
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	92.22
PRK02899	197	adaptor protein; Provisional	89.94
PRK02315	233	adaptor protein; Provisional	87.37
PF05389	220	MecA: Negative regulator of genetic competence (Me	84.03
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	81.04

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=4.2e-37  Score=203.94  Aligned_cols=68  Identities=43%  Similarity=0.898  Sum_probs=66.0

Q ss_pred             CCCCCCCceEEEEEcCCceEEEEeccCCCCHHHHHHHHHHHHhccccCCCceEeeCcHHHHHHHHHhh
Q 043356           10 GVRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFLNLM   77 (79)
Q Consensus        10 ~~~~vpkG~~~VyVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~iPC~~~~Fe~vl~~l   77 (79)
                      .+.+||+||||||||++++||+||++|||||+|++||++|||||||+|+|+|+|||+++.|++++|+|
T Consensus        36 ~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         36 LPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence            56689999999999999999999999999999999999999999999999999999999999999998

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=3e-37  Score=202.27  Aligned_cols=68  Identities=50%  Similarity=0.953  Sum_probs=66.1

Q ss_pred             CCCCCCceEEEEEcCCceEEEEeccCCCCHHHHHHHHHHHHhccccCCCceEeeCcHHHHHHHHHhhc
Q 043356           11 VRRAPKGHFVVYVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFLNLMD   78 (79)
Q Consensus        11 ~~~vpkG~~~VyVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~iPC~~~~Fe~vl~~l~   78 (79)
                      ..++|+||||||||++++||+||++|||||+|++||++|||||||+++|+|+|||+++.|++++|+|+
T Consensus        33 ~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   33 ESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             cCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence            37899999999999999999999999999999999999999999999999999999999999999986

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=2.3e-35  Score=195.88  Aligned_cols=68  Identities=41%  Similarity=0.890  Sum_probs=63.6

Q ss_pred             cCCCCCCCceEEEEEcC----CceEEEEeccCCCCHHHHHHHHHHHHhccccC-CCceEeeCcHHHHHHHHHh
Q 043356            9 EGVRRAPKGHFVVYVGE----EMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSR-ESGIVLPCAESTFRRFLNL   76 (79)
Q Consensus         9 ~~~~~vpkG~~~VyVG~----e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~-~G~L~iPC~~~~Fe~vl~~   76 (79)
                      +.+.+|||||||||||+    +++||+||++|||||+|++||++|||||||+| +|+|+|||+++.|++++..
T Consensus        30 ~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         30 SSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             cccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHHh
Confidence            46678999999999997    58999999999999999999999999999999 5999999999999999864

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=3.2e-34  Score=191.20  Aligned_cols=67  Identities=43%  Similarity=0.862  Sum_probs=62.8

Q ss_pred             CCCCCCceEEEEEcC--CceEEEEeccCCCCHHHHHHHHHHHHhccccC-CCceEeeCcHHHHHHHHHhh
Q 043356           11 VRRAPKGHFVVYVGE--EMRRFVIPLSYLKDPTFQKLLEKAAEEYMFSR-ESGIVLPCAESTFRRFLNLM   77 (79)
Q Consensus        11 ~~~vpkG~~~VyVG~--e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~-~G~L~iPC~~~~Fe~vl~~l   77 (79)
                      +.+|||||||||||+  |++||+||++|||||+|++||++|||||||+| +|+|+|||+++.|+++++.-
T Consensus        36 ~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~~  105 (108)
T PLN03219         36 SGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSH  105 (108)
T ss_pred             CCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHhh
Confidence            457999999999997  58999999999999999999999999999998 49999999999999999764

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=92.22  E-value=0.19  Score=30.95  Aligned_cols=57  Identities=16%  Similarity=0.175  Sum_probs=42.4

Q ss_pred             EEEEcCCceEEEEeccCCC-C--HHHHHHHHHHHHhccccCCCceEeeCcHHHHHHHHHhhc
Q 043356           20 VVYVGEEMRRFVIPLSYLK-D--PTFQKLLEKAAEEYMFSRESGIVLPCAESTFRRFLNLMD   78 (79)
Q Consensus        20 ~VyVG~e~~RfvVp~~yL~-h--P~F~~LL~~aeeEfG~~~~G~L~iPC~~~~Fe~vl~~l~   78 (79)
                      -+-||.  ++|.++.+-|. +  ..|..+++.......-+.+|.+-|-++...|++|+..+.
T Consensus         2 ~lNVGG--~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr   61 (94)
T PF02214_consen    2 RLNVGG--TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLR   61 (94)
T ss_dssp             EEEETT--EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHH
T ss_pred             EEEECC--EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHh
Confidence            356884  99999998887 4  488888886532223344599999999999999998764

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=89.94  E-value=0.28  Score=35.31  Aligned_cols=24  Identities=21%  Similarity=0.465  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHhccccCCCceEe
Q 043356           40 PTFQKLLEKAAEEYMFSRESGIVL   63 (79)
Q Consensus        40 P~F~~LL~~aeeEfG~~~~G~L~i   63 (79)
                      -+|.++|++|..|+||..+|+|+|
T Consensus        39 ~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         39 QLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHhhhccCcccCCeEEE
Confidence            467788999999999999999985

>PRK02315 adaptor protein; Provisional

Probab=87.37  E-value=0.49  Score=34.72  Aligned_cols=25  Identities=20%  Similarity=0.381  Sum_probs=22.7

Q ss_pred             CHHHHHHHHHHHHhccccCCCceEe
Q 043356           39 DPTFQKLLEKAAEEYMFSRESGIVL   63 (79)
Q Consensus        39 hP~F~~LL~~aeeEfG~~~~G~L~i   63 (79)
                      +-+|.++|++|..|+||..+|+|+|
T Consensus        38 e~fF~~mm~Ea~~e~~F~~~~pl~~   62 (233)
T PRK02315         38 EEFFYSMMDEVDEEDDFADEGPLWF   62 (233)
T ss_pred             HHHHHHHHHHhccccCcccCCeEEE
Confidence            3589999999999999999999986

>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation

Probab=84.03  E-value=0.32  Score=34.81  Aligned_cols=25  Identities=28%  Similarity=0.460  Sum_probs=0.0

Q ss_pred             CHHHHHHHHHHHHhccccCCCceEe
Q 043356           39 DPTFQKLLEKAAEEYMFSRESGIVL   63 (79)
Q Consensus        39 hP~F~~LL~~aeeEfG~~~~G~L~i   63 (79)
                      +-+|.++|++|.+|+||..+|+|++
T Consensus        38 e~fF~~ileea~~e~~F~~~~~l~~   62 (220)
T PF05389_consen   38 EEFFYSILEEADEEHGFENDGPLTF   62 (220)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHhccccCcccCCeEEE
Confidence            5689999999999999999999875

It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.

>smart00666 PB1 PB1 domain

Probab=81.04  E-value=5  Score=23.80  Aligned_cols=50  Identities=24%  Similarity=0.408  Sum_probs=35.9

Q ss_pred             EEcCCceEEEEeccCCCCHHHHHHHHHHHHhcccc----------CCC-ceEeeCcHHHHHHHHHh
Q 043356           22 YVGEEMRRFVIPLSYLKDPTFQKLLEKAAEEYMFS----------RES-GIVLPCAESTFRRFLNL   76 (79)
Q Consensus        22 yVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~----------~~G-~L~iPC~~~~Fe~vl~~   76 (79)
                      +-|++.+||.+|-    ...|.+|..+..+-|+..          .+| .++|.++. .++.++.+
T Consensus         7 ~~~~~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~-Dl~~a~~~   67 (81)
T smart00666        7 RYGGETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDE-DLEEAIEE   67 (81)
T ss_pred             EECCEEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHH-HHHHHHHH
Confidence            3477789999985    788999999999988874          233 57788865 34444443

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00