Citrus Sinensis ID: 043381

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
LLPIKLQDPNPKEIRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQREMMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFDESFASYRPSIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKELIDVGSGIFQVSVTAPPTAKIAPPSFYLLFVVYRQVPSPGTWVQIG
ccccccccccccccccEEEEEccccccccccccccccccccccEEEEEEEcccccEEccccccccEEcEEEEcccccEEEEccccccccccccccccccccEEEEEcccccccEEEcccccccccccccEEEcccccEEEEccccccccccccccccccEEEEEEEEcccccccccccccEEEEcccccEEEEEEEEEEEEEEccccccccEEEEEEEccccccccccccccEEEEccEEEEEccccEEEEEEEccccccccccccEEEEEEccccccccEEEEEc
ccccccccccccccccEEEEEccccccccccccccccccccccccEEEEccccccEEEcccccccccccEEEcccccEEEEEccccccccccccccccccEEEEccccccccEEEEccccccccEEEcEEEEccccEEEEEccccccccccccccccccEEEEEEEccccccccccccccEEEEccccccEEcccEEEEEEEEcccccccccEEEEEEcccccccccccccEEEEEEEEccccccccEEEEEEEccccccccccccEEEEEEEccccccEEEEEEc
llpiklqdpnpkEIRAEVLIcggakpeagmlagkGEFMNALQDCGrieitnksatwqremmpsprvmgemlllptgdvliingakkgtagwnfatdpnttpvlyepndpinerfseltptskprmchstsvvlpdgkilvagsnphsrynltsgskyptelriekfyppyfdesfasyrpsIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDlkvtmyappftthgvsmGQRLLVLATKELIdvgsgifqvsvtapptakiappsFYLLFVVYRqvpspgtwvqig
llpiklqdpnpkeIRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQREMMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSeltptskprmcHSTSVVLPDGKILvagsnphsrynltsgskypteLRIEKFYPPYFDESFASYRPSIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKELIDVGSGIFQVSVTAPPTAKIAPPSFYLLFVVYRQVPSPGTWVQIG
LLPIKLQDPNPKEIRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQREMMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFDESFASYRPSIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKELIDVGSGIFQVSVTAPPTAKIAPPSFYLLFVVYRQVPSPGTWVQIG
**************RAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQRE****PRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLY*************************SVVLPDGKILVAG******YNLTSGSKYPTELRIEKFYPPYFDESFASYRPSIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKELIDVGSGIFQVSVTAPPTAKIAPPSFYLLFVVYRQVPSPGTWV***
LLPIKL*DPNPKEIRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQREMMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFDESFASYRPSIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKELIDVGSGIFQVSVTAPPTAKIAPPSFYLLFVVYRQVPSPGTWVQIG
LLPIKLQDPNPKEIRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQREMMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFDESFASYRPSIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKELIDVGSGIFQVSVTAPPTAKIAPPSFYLLFVVYRQVPSPGTWVQIG
LLPIKLQDPNPKEIRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQREMMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFDESFASYRPSIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKELIDVGSGIFQVSVTAPPTAKIAPPSFYLLFVVYRQVPSPGTWVQIG
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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LLPIKLQDPNPKEIRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQREMMPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFDESFASYRPSIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKELIDVGSGIFQVSVTAPPTAKIAPPSFYLLFVVYRQVPSPGTWVQIG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query286 2.2.26 [Sep-21-2011]
P0CS93680 Galactose oxidase OS=Gibb no no 0.681 0.286 0.253 3e-05
I1S2N3680 Galactose oxidase OS=Gibb no no 0.636 0.267 0.255 5e-05
>sp|P0CS93|GAOA_GIBZA Galactose oxidase OS=Gibberella zeae GN=GAOA PE=1 SV=1 Back     alignment and function desciption
 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 93/225 (41%), Gaps = 30/225 (13%)

Query: 65  RVMGEMLLLPTGDVLIINGAKKGTAGWNFA-TDPNTTPVLYEPNDPINERFSELTPTSKP 123
           R     ++LP G   I  G ++G     F  + P  TP +Y P     + F +  P S  
Sbjct: 480 RTFHTSVVLPDGSTFITGGQRRGIP---FEDSTPVFTPEIYVPEQ---DTFYKQNPNSIV 533

Query: 124 RMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFDESFA--SYRPS 181
           R+ HS S++LPDG++   G           G         + F P Y   S    + RP 
Sbjct: 534 RVYHSISLLLPDGRVFNGGGG-------LCGDCTTNHFDAQIFTPNYLYNSNGNLATRPK 586

Query: 182 IVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKEL 241
           I ++   + VK G    I       + S++   +  Y     TH V+  QR + L    L
Sbjct: 587 I-TRTSTQSVKVGGRITI-----STDSSISKASLIRYGT--ATHTVNTDQRRIPLT---L 635

Query: 242 IDVGSGIFQVSVTAPPTAKIAPPSFYLLFVVYRQ-VPSPGTWVQI 285
            + G   +   V  P  + +A P +++LFV+    VPS  + +++
Sbjct: 636 TNNGGNSYSFQV--PSDSGVALPGYWMLFVMNSAGVPSVASTIRV 678
Catalyzes the sterospecific oxidation of primary alcohols to the corresponding aldehydes. The biologically relevant substrate of the enzyme is not known as the enzyme exhibits broad substrate specificity from small alcohols through sugars to oligo- and polysaccharides.
Gibberella zeae (taxid: 5518)
EC: 1EC: .EC: 1EC: .EC: 3EC: .EC: 9
>sp|I1S2N3|GAOA_GIBZE Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=GAOA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
225429969 584 PREDICTED: uncharacterized protein LOC10 0.993 0.486 0.643 1e-106
297738786 900 unnamed protein product [Vitis vinifera] 0.993 0.315 0.582 3e-92
225445162 647 PREDICTED: galactose oxidase-like [Vitis 0.993 0.438 0.582 5e-92
449443335 614 PREDICTED: galactose oxidase-like [Cucum 0.993 0.462 0.557 2e-89
224119812 609 predicted protein [Populus trichocarpa] 0.989 0.464 0.524 2e-80
224142169 522 predicted protein [Populus trichocarpa] 0.989 0.542 0.510 4e-78
255546401 613 Galactose oxidase precursor, putative [R 0.982 0.458 0.536 2e-77
297812139 596 hypothetical protein ARALYDRAFT_488852 [ 0.986 0.473 0.484 6e-77
15241135 594 glyoxal oxidase-related protein [Arabido 0.986 0.474 0.480 2e-76
19310437 594 AT5g19580/T20D1_100 [Arabidopsis thalian 0.986 0.474 0.480 3e-76
>gi|225429969|ref|XP_002281387.1| PREDICTED: uncharacterized protein LOC100256065 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/286 (64%), Positives = 228/286 (79%), Gaps = 2/286 (0%)

Query: 1   LLPIKLQDPNPKEIRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQREM 60
           LLPI+L+DPNPK IRAEV++CGGA+PEA  LA KG ++ ALQDCGR+EIT  +ATW +E+
Sbjct: 299 LLPIQLRDPNPKVIRAEVIVCGGARPEAAKLADKGVYLTALQDCGRMEITAANATWTKEV 358

Query: 61  MPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPT 120
           MP+PRVMG+ML+LPTGD+L++NGAK+GT+GWNFA DPN  PVLY+P+ PI +RF+EL  T
Sbjct: 359 MPTPRVMGDMLVLPTGDLLMLNGAKRGTSGWNFADDPNYVPVLYKPDGPITQRFTELKAT 418

Query: 121 SKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFDESFASYRP 180
           S  RM HSTS +LPDG ILVAGSN  + Y  T G+KYPTE R+EKFYPPY D    S RP
Sbjct: 419 SIARMYHSTSALLPDGTILVAGSNTKNYY-FTRGTKYPTEFRVEKFYPPYLDPLRVSDRP 477

Query: 181 SIVSKFKGKMVKYGQNFVIQFKLDE-LEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATK 239
            I + FK KMVKYG+   + FKL   L V L+DLKVTMYAPPFTTHG SM QRLL+LA +
Sbjct: 478 KIETNFKRKMVKYGKGLTVVFKLKTILRVKLSDLKVTMYAPPFTTHGFSMNQRLLILAKR 537

Query: 240 ELIDVGSGIFQVSVTAPPTAKIAPPSFYLLFVVYRQVPSPGTWVQI 285
           +LI+ G G F+VSV APP+AK+APP +YL+FVV++ +PSPG W +I
Sbjct: 538 QLINTGGGRFRVSVVAPPSAKVAPPGYYLIFVVHQGLPSPGVWTKI 583

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738786|emb|CBI28031.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225445162|ref|XP_002280698.1| PREDICTED: galactose oxidase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449443335|ref|XP_004139435.1| PREDICTED: galactose oxidase-like [Cucumis sativus] gi|449519812|ref|XP_004166928.1| PREDICTED: galactose oxidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224119812|ref|XP_002331167.1| predicted protein [Populus trichocarpa] gi|222873250|gb|EEF10381.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224142169|ref|XP_002324431.1| predicted protein [Populus trichocarpa] gi|222865865|gb|EEF02996.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255546401|ref|XP_002514260.1| Galactose oxidase precursor, putative [Ricinus communis] gi|223546716|gb|EEF48214.1| Galactose oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297812139|ref|XP_002873953.1| hypothetical protein ARALYDRAFT_488852 [Arabidopsis lyrata subsp. lyrata] gi|297319790|gb|EFH50212.1| hypothetical protein ARALYDRAFT_488852 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15241135|ref|NP_197459.1| glyoxal oxidase-related protein [Arabidopsis thaliana] gi|332005344|gb|AED92727.1| glyoxal oxidase-related protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|19310437|gb|AAL84955.1| AT5g19580/T20D1_100 [Arabidopsis thaliana] gi|24797058|gb|AAN64541.1| At5g19580/T20D1_100 [Arabidopsis thaliana] gi|110742638|dbj|BAE99231.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
TAIR|locus:2180791594 AT5G19580 "AT5G19580" [Arabido 0.986 0.474 0.480 6.5e-74
TAIR|locus:2019564615 GLOX1 "AT1G67290" [Arabidopsis 0.989 0.460 0.486 3.6e-73
TAIR|locus:2035408548 AT1G19900 "AT1G19900" [Arabido 0.975 0.509 0.449 1.5e-60
TAIR|locus:2076696547 AT3G57620 "AT3G57620" [Arabido 0.944 0.493 0.419 5.7e-59
TAIR|locus:2005664547 AT1G75620 "AT1G75620" [Arabido 0.947 0.495 0.450 1.4e-57
TAIR|locus:2084480545 AT3G53950 "AT3G53950" [Arabido 0.916 0.480 0.414 5.1e-51
UNIPROTKB|G4MQZ0669 MGG_02368 "Galactose oxidase" 0.884 0.378 0.248 5.2e-07
TAIR|locus:2180791 AT5G19580 "AT5G19580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 137/285 (48%), Positives = 190/285 (66%)

Query:     1 LLPIKLQDPNPKEIRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQREM 60
             LLPI+L   NPK I AEVL+CGG+K +A   AGK  +  ALQDC RI I +    W+ EM
Sbjct:   312 LLPIQLYVKNPKVIPAEVLVCGGSKQDAYYKAGKKIYEPALQDCARIRINSAKPRWKTEM 371

Query:    61 MPSPRVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPT 120
             MP+PR+M + ++LP GD+L++NGAK+G +GW +  DP   P+LY+P+    +RF +L PT
Sbjct:   372 MPTPRIMSDTVILPNGDILLVNGAKRGCSGWGYGKDPAFAPLLYKPHAARGKRFRQLKPT 431

Query:   121 SKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFDESFASYRP 180
             + PRM HS++++LPDGK+LV GSN +  Y      ++PTELR+EKF PPY D + A+ RP
Sbjct:   432 TIPRMYHSSAIILPDGKVLVGGSNTNDGYKYNV--EFPTELRVEKFSPPYLDPALANIRP 489

Query:   181 SIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKE 240
              IV+    K VKYGQ F ++  L E   +  +LKVTM AP FTTH +SM  R+L+L    
Sbjct:   490 KIVTTGTPKQVKYGQFFNVKVDLKEKGATKGNLKVTMLAPAFTTHSISMNMRMLILGVNN 549

Query:   241 LIDVGSGIFQVSVTAPPTAKIAPPSFYLLFVVYRQVPSPGTWVQI 285
             +   G+G + +   APP   IAPP +YL+F +Y+ VPS G W+Q+
Sbjct:   550 VKPAGAG-YDIQAVAPPNGNIAPPGYYLIFAIYKGVPSTGEWIQV 593
GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009827 "plant-type cell wall modification" evidence=RCA
GO:0009860 "pollen tube growth" evidence=RCA
TAIR|locus:2019564 GLOX1 "AT1G67290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035408 AT1G19900 "AT1G19900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076696 AT3G57620 "AT3G57620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005664 AT1G75620 "AT1G75620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084480 AT3G53950 "AT3G53950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4MQZ0 MGG_02368 "Galactose oxidase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
cd02851103 cd02851, E_set_GO_C, C-terminal Early set domain a 3e-28
pfam0911897 pfam09118, DUF1929, Domain of unknown function (DU 2e-24
>gnl|CDD|199882 cd02851, E_set_GO_C, C-terminal Early set domain associated with the catalytic domain of galactose oxidase Back     alignment and domain information 
 Score =  104 bits (261), Expect = 3e-28
 Identities = 43/108 (39%), Positives = 58/108 (53%), Gaps = 11/108 (10%)

Query: 179 RPSIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLAT 238
           RP+I S    K V YGQ F +        +     +VT+  P F TH  +MGQRL+ L  
Sbjct: 6   RPTITSA--PKTVGYGQTFTVTVSGPGGGIV----RVTLVRPGFVTHSFNMGQRLVKLP- 58

Query: 239 KELIDVGSGIFQVSVTAPPTAKIAPPSFYLLFVVYRQ-VPSPGTWVQI 285
              +    G + V+VTAPP A +APP +Y+LFVV    VPS   WV++
Sbjct: 59  ---VTGSGGDYTVTVTAPPNANVAPPGYYMLFVVNADGVPSVAKWVRV 103

E or "early" set domains are associated with the catalytic domain of galactose oxidase at the C-terminal end. Galactose oxidase is an extracellular monomeric enzyme which catalyzes the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalyzing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminal domain of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. Length = 103
>gnl|CDD|220118 pfam09118, DUF1929, Domain of unknown function (DUF1929) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 286
cd02851101 Galactose_oxidase_C_term Galactose oxidase C-termi 100.0
PF0911898 DUF1929: Domain of unknown function (DUF1929); Int 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.73
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.7
PHA02713557 hypothetical protein; Provisional 99.62
PHA02713557 hypothetical protein; Provisional 99.62
PHA02790480 Kelch-like protein; Provisional 99.61
PHA02790480 Kelch-like protein; Provisional 99.55
PHA03098534 kelch-like protein; Provisional 99.47
PHA03098534 kelch-like protein; Provisional 99.46
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 99.42
PLN02153341 epithiospecifier protein 99.41
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 99.39
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 99.38
PLN02153341 epithiospecifier protein 99.31
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 99.3
PLN02193470 nitrile-specifier protein 99.29
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 99.25
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 99.19
PLN02193470 nitrile-specifier protein 99.14
PF1396450 Kelch_6: Kelch motif 98.8
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 98.77
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 98.72
smart0061247 Kelch Kelch domain. 98.52
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 98.37
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 98.31
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 98.2
KOG0379482 consensus Kelch repeat-containing proteins [Genera 98.14
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 98.03
PF1341549 Kelch_3: Galactose oxidase, central domain 97.85
KOG4693 392 consensus Uncharacterized conserved protein, conta 97.71
smart0061247 Kelch Kelch domain. 97.68
KOG4693392 consensus Uncharacterized conserved protein, conta 97.48
PF1396450 Kelch_6: Kelch motif 97.38
PF1341549 Kelch_3: Galactose oxidase, central domain 97.27
PLN02772 398 guanylate kinase 97.26
KOG1230 521 consensus Protein containing repeated kelch motifs 97.21
KOG1230 521 consensus Protein containing repeated kelch motifs 97.19
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 96.77
COG3055381 Uncharacterized protein conserved in bacteria [Fun 96.7
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 96.29
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 96.11
COG3055381 Uncharacterized protein conserved in bacteria [Fun 95.34
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 94.96
PF1385442 Kelch_5: Kelch motif 94.05
PLN02772 398 guanylate kinase 94.02
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 92.46
PF1385442 Kelch_5: Kelch motif 91.17
>cd02851 Galactose_oxidase_C_term Galactose oxidase C-terminus domain Back     alignment and domain information 
Probab=100.00  E-value=8e-36  Score=237.63  Aligned_cols=99  Identities=26%  Similarity=0.326  Sum_probs=88.6

Q ss_pred             CCCCCCCceeecCCC-ceeecCCEEEEEEEecccccccCcEEEEEEcCCccccccCCCcceEEecceeeeecCCceEEEE
Q 043381          174 SFASYRPSIVSKFKG-KMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKELIDVGSGIFQVS  252 (286)
Q Consensus       174 ~~~~~RP~i~~~~~p-~~~~~g~~~~v~~~~~~~~~~~~~~~v~L~~~~~~THs~n~~QR~v~L~~~~~~~~g~~~~~~~  252 (286)
                      |+++.||+|+++  | .+++||++|+|+++.       .+.+|+|+|++|+||++|||||+|.|+++.  ..+   .+++
T Consensus         1 g~~a~RP~I~~~--p~~~i~yG~~f~v~~~~-------~i~~v~Lvr~~~~THs~~~~QR~v~L~~~~--~~~---~~~~   66 (101)
T cd02851           1 GTLASRPVITSA--STQTAKVGDTITVSTDS-------PISSASLVRYGSATHTVNTDQRRIPLTLFS--VGG---NSYS   66 (101)
T ss_pred             CCCCCCCeeccC--CccccccCCEEEEEEec-------cceEEEEEecccccccccCCccEEEeeeEe--cCC---CEEE
Confidence            356799999999  8 899999999999972       489999999999999999999999999875  222   4677


Q ss_pred             EEcCCCCCcCCCcceEEEEEc-CCCCCccEEEEeC
Q 043381          253 VTAPPTAKIAPPSFYLLFVVY-RQVPSPGTWVQIG  286 (286)
Q Consensus       253 v~~P~~~~vappG~YmLFv~~-~GvPS~a~~V~i~  286 (286)
                      +++|+|++|||||||||||++ +||||+|+||+|+
T Consensus        67 v~~P~n~~vaPPGyYmLFvv~~~GvPS~a~wV~i~  101 (101)
T cd02851          67 VQIPSDPGVALPGYYMLFVMNSAGVPSVAKTIRIT  101 (101)
T ss_pred             EEcCCCCCcCCCcCeEEEEECCCCcccccEEEEeC
Confidence            888999999999999999995 9999999999985

Galactose oxidase is an extracellular monomeric enzyme which catalyses the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalysing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminus of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
>PF09118 DUF1929: Domain of unknown function (DUF1929); InterPro: IPR015202 This domain adopts a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF13854 Kelch_5: Kelch motif Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF13854 Kelch_5: Kelch motif Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
2wq8_A661 Glycan Labelling Using Engineered Variants Of Galac 2e-06
1k3i_A656 Crystal Structure Of The Precursor Of Galactose Oxi 3e-06
2eie_A639 Crystal Structure Of Galactose Oxidase Complexed Wi 3e-06
2eid_A639 Galactose Oxidase W290g Mutant Length = 639 3e-06
1t2x_A639 Glactose Oxidase C383s Mutant Identified By Directe 3e-06
2eic_A639 Crystal Structure Of Galactose Oxidase Mutant W290f 3e-06
2eib_A639 Crystal Structure Of Galactose Oxidase, W290h Mutan 3e-06
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose Oxidase Obtained By Directed Evolution Length = 661 Back     alignment and structure 
Iteration: 1

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 86/211 (40%), Gaps = 29/211 (13%)
Query: 65  RVMGEMLLLPTGDVLIINGAKKGTAGWNFA-TDPNTTPVLYEPNDPINERFSELTPTSKP 123
           R     ++LP G   I  G ++G     F  + P  TP +Y P     + F +  P S  
Sbjct: 461 RTFHTSVVLPDGSTFITGGQRRGII---FEDSTPVFTPEIYVPE---QDTFYKQNPNSIV 514
Query: 124 RMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFDESFA--SYRPS 181
           R  HS S++LPDG++   G           G         + F P Y  +S    + RP 
Sbjct: 515 RAYHSISLLLPDGRVFNGGGG-------LCGDCTTNHFDAQIFTPNYLYDSNGNLATRPK 567
Query: 182 IVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKEL 241
           I ++   + VK G    I       + S++   +  Y     TH V+  QR + L    L
Sbjct: 568 I-TRTSTQSVKVGGRITI-----STDSSISKASLIRYGT--ATHTVNTDQRRIPLT---L 616
Query: 242 IDVGSGIFQVSVTAPPTAKIAPPSFYLLFVV 272
            + G   +   V  P  + +A P +++LFV+
Sbjct: 617 TNNGGNSYSFQV--PSDSGVALPGYWMLFVM 645
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase Length = 656 Back     alignment and structure
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With Azide Length = 639 Back     alignment and structure
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant Length = 639 Back     alignment and structure
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed Evolution Length = 639 Back     alignment and structure
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f Length = 639 Back     alignment and structure
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant Length = 639 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 1e-64
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 3e-04
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 1e-04
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 5e-04
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 Back     alignment and structure
 Score =  213 bits (542), Expect = 1e-64
 Identities = 61/279 (21%), Positives = 104/279 (37%), Gaps = 32/279 (11%)

Query: 10  NPKEIRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNKSATWQREMMPSPRVMGE 69
               ++ ++L  GG+       A     +  L + G    T+ +  +    +   R    
Sbjct: 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG----TSPNTVFASNGLYFARTFHT 460

Query: 70  MLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHST 129
            ++LP G   I  G ++G    +  + P  TP +Y P       F +  P S  R+ HS 
Sbjct: 461 SVVLPDGSTFITGGQRRGIPFED--STPVFTPEIYVPEQD---TFYKQNPNSIVRVYHSI 515

Query: 130 SVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFDESFAS--YRPSIVSKFK 187
           S++LPDG++   G           G         + F P Y   S  +   RP I     
Sbjct: 516 SLLLPDGRVFNGGGGLC-------GDCTTNHFDAQIFTPNYLYNSNGNLATRPKITR-TS 567

Query: 188 GKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKELIDVGSG 247
            + VK G    I           +  K ++      TH V+  QR + L         +G
Sbjct: 568 TQSVKVGGRITIST-------DSSISKASLIRYGTATHTVNTDQRRIPLTL-----TNNG 615

Query: 248 IFQVSVTAPPTAKIAPPSFYLLFVVYRQ-VPSPGTWVQI 285
               S   P  + +A P +++LFV+    VPS  + +++
Sbjct: 616 GNSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRV 654
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 100.0
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.59
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.58
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.57
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.57
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.56
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.56
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.56
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.56
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.56
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.55
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.53
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.53
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 99.47
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.47
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 99.43
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 99.42
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.35
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 93.08
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 88.92
1w8o_A 601 Bacterial sialidase; 3D-structure, glycosidase, hy 88.36
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 87.9
3jrp_A379 Fusion protein of protein transport protein SEC13 87.28
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 86.59
1k8k_C 372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 86.06
4e54_B435 DNA damage-binding protein 2; beta barrel, double 85.84
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 84.83
3jrp_A 379 Fusion protein of protein transport protein SEC13 84.12
2pm7_B297 Protein transport protein SEC13, protein transport 84.06
2xbg_A327 YCF48-like protein; photosynthesis, photosystem II 84.0
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 83.07
3ow8_A321 WD repeat-containing protein 61; structural genomi 82.86
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 81.97
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 81.55
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 80.96
3ow8_A321 WD repeat-containing protein 61; structural genomi 80.77
3dwl_C 377 Actin-related protein 2/3 complex subunit 1; prope 80.7
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 80.45
3jro_A 753 Fusion protein of protein transport protein SEC13 80.07
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
Probab=100.00  E-value=2.1e-55  Score=442.31  Aligned_cols=240  Identities=24%  Similarity=0.390  Sum_probs=203.9

Q ss_pred             CccEEEEEcCCCCCCCcccCCCccccccCcEEEEEecCC-CCCeEee---cCCCCccccceEEeCCCcEEEEcCccCCCC
Q 043381           14 IRAEVLICGGAKPEAGMLAGKGEFMNALQDCGRIEITNK-SATWQRE---MMPSPRVMGEMLLLPTGDVLIINGAKKGTA   89 (286)
Q Consensus        14 ~~~~Vlv~GG~~~~~~~~~~~~~~~~a~~s~~~id~~~~-~~~W~~~---~M~~~R~~~~~v~LpdG~VlvvGG~~~g~a   89 (286)
                      .+++||+|||...  +.      ...++++|..+++.++ .++|+..   +|+.+|.+|++++||||+|||+||.+.+. 
T Consensus       409 ~~~~i~v~GG~~~--~~------~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~-  479 (656)
T 1k3i_A          409 VKGKILTFGGSPD--YQ------DSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI-  479 (656)
T ss_dssp             TTTEEEEECCBSS--SS------SSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC-
T ss_pred             CCCeEEEEeCCCC--CC------CCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCc-
Confidence            3789999999752  21      1256777777666554 4789864   89999999999999999999999987543 


Q ss_pred             CccCCCCCCCccEEecCCCCCCCceEEcCCCCCCCccceeeEEcCCCcEEEeCCCCCCCcccCCCCCCCcccEEEEEeCC
Q 043381           90 GWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPP  169 (286)
Q Consensus        90 g~~~~~~~~~~~e~YdP~t~~g~~wt~~a~~~~~R~yHS~A~LLpDGrVlv~GG~~~~~~~~~~~~~~p~~~~vE~y~Pp  169 (286)
                      +|. +.+++.+.|+|||+++   +|+.+++++++|.|||+|+||+||+|||+||+.+..+.       .+++++|+|+||
T Consensus       480 ~~~-~~~~~~~v~~ydp~t~---~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~~~-------~~~~~~e~~~Pp  548 (656)
T 1k3i_A          480 PFE-DSTPVFTPEIYVPEQD---TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCT-------TNHFDAQIFTPN  548 (656)
T ss_dssp             TTC-CCSBCCCCEEEEGGGT---EEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTTCS-------CCCCEEEEEECG
T ss_pred             CcC-CCCcccceEEEcCCCC---ceeecCCCCCccccccHhhcCCCcEEEecCCCCCCCCC-------CCeeEEEEEeCh
Confidence            333 4567889999999999   99999999999999999999999999999998877542       247899999999


Q ss_pred             CCCCC--CCCCCCceeecCCCceeecCCEEEEEEEecccccccCcEEEEEEcCCccccccCCCcceEEecceeeeecCCc
Q 043381          170 YFDES--FASYRPSIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKELIDVGSG  247 (286)
Q Consensus       170 yl~~~--~~~~RP~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~~v~L~~~~~~THs~n~~QR~v~L~~~~~~~~g~~  247 (286)
                      ||+++  ..+.||+|+++. |+++.||++|+|+++.       .+.+|+|||++|+||++||+||+|+|+++.   .|. 
T Consensus       549 yl~~~~~~~~~rP~i~~~~-~~~~~~g~~~~~~~~~-------~~~~~~l~~~~~~th~~~~~qr~~~l~~~~---~~~-  616 (656)
T 1k3i_A          549 YLYNSNGNLATRPKITRTS-TQSVKVGGRITISTDS-------SISKASLIRYGTATHTVNTDQRRIPLTLTN---NGG-  616 (656)
T ss_dssp             GGBCTTSSBCCCCCEEEES-CSEEETTCEEEEEESS-------CCSEEEEEECCEEETTBCSSCCEEECCEEE---EET-
T ss_pred             hhccCCCCcCCCCcccccC-CceecCCCEEEEEEec-------cceEEEEEecCccccCcCCCCcEEecceEe---cCC-
Confidence            99863  556899999843 8999999999999863       367899999999999999999999999975   232 


Q ss_pred             eEEEEEEcCCCCCcCCCcceEEEEEc-CCCCCccEEEEeC
Q 043381          248 IFQVSVTAPPTAKIAPPSFYLLFVVY-RQVPSPGTWVQIG  286 (286)
Q Consensus       248 ~~~~~v~~P~~~~vappG~YmLFv~~-~GvPS~a~~V~i~  286 (286)
                       .+++|++|+|++||||||||||||+ +||||+|+||+|.
T Consensus       617 -~~~~~~~p~~~~~~ppg~y~lf~~~~~g~ps~~~~v~~~  655 (656)
T 1k3i_A          617 -NSYSFQVPSDSGVALPGYWMLFVMNSAGVPSVASTIRVT  655 (656)
T ss_dssp             -TEEEEECCSCTTTSCSEEEEEEEECTTSCBCCCEEEEEE
T ss_pred             -CEEEEECCCCCCcCCCcCeEEEEECCCCcccccEEEEEe
Confidence             3678999999999999999999996 9999999999984
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 286
d1k3ia3387 b.69.1.1 (A:151-537) Galactose oxidase, central do 6e-23
d1k3ia1102 b.1.18.2 (A:538-639) Galactose oxidase, C-terminal 2e-22
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 94.9 bits (234), Expect = 6e-23
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 12/143 (8%)

Query: 29  GMLAGKGEFMNALQDCGRIEITNKSATWQREMMPSPRVMGEMLLLPTGDVLIINGAKKGT 88
                     NA         T+ +  +    +   R     ++LP G   I  G ++G 
Sbjct: 253 PDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI 312

Query: 89  AGWNFATDPNTTPVLYEPNDPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSR 148
              +  + P  TP +Y    P  + F +  P S  R+ HS S++LPDG++   G      
Sbjct: 313 PFED--STPVFTPEIY---VPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGL--- 364

Query: 149 YNLTSGSKYPTELRIEKFYPPYF 171
                G         + F P Y 
Sbjct: 365 ----CGDCTTNHFDAQIFTPNYL 383
>d1k3ia1 b.1.18.2 (A:538-639) Galactose oxidase, C-terminal domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
d1k3ia1102 Galactose oxidase, C-terminal domain {Fungi (Fusar 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 99.94
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 99.6
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 99.55
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 99.25
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 87.89
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 86.92
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 84.64
d1tbga_340 beta1-subunit of the signal-transducing G protein 83.33
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 82.99
>d1k3ia1 b.1.18.2 (A:538-639) Galactose oxidase, C-terminal domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Galactose oxidase, C-terminal domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=100.00  E-value=4.4e-36  Score=236.67  Aligned_cols=99  Identities=25%  Similarity=0.331  Sum_probs=87.8

Q ss_pred             CCCCCCCceeecCCCceeecCCEEEEEEEecccccccCcEEEEEEcCCccccccCCCcceEEecceeeeecCCceEEEEE
Q 043381          174 SFASYRPSIVSKFKGKMVKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVLATKELIDVGSGIFQVSV  253 (286)
Q Consensus       174 ~~~~~RP~i~~~~~p~~~~~g~~~~v~~~~~~~~~~~~~~~v~L~~~~~~THs~n~~QR~v~L~~~~~~~~g~~~~~~~v  253 (286)
                      |+.+.||+|++.. |..++||++|+|+++       ..+.+|+|+|+||+||++|||||+|.|+++..  .+   ++++|
T Consensus         1 G~~a~RP~I~~~~-~~~i~~G~~f~v~~~-------~~i~~v~Li~~gs~THs~~~~QR~v~L~~~~~--~~---~~~~v   67 (102)
T d1k3ia1           1 GNLATRPKITRTS-TQSVKVGGRITISTD-------SSISKASLIRYGTATHTVNTDQRRIPLTLTNN--GG---NSYSF   67 (102)
T ss_dssp             SSBCCCCCEEEES-CSEEETTCEEEEEES-------SCCSEEEEEECCEEETTBCSSCCEEECCEEEE--ET---TEEEE
T ss_pred             CCCCCCCeecccC-CceecCCCEEEEEec-------CcccEEEEEecCCccccCcCCCCEEeceeEec--CC---CEEEE
Confidence            3568999998753 899999999998875       24779999999999999999999999999752  23   47899


Q ss_pred             EcCCCCCcCCCcceEEEEEc-CCCCCccEEEEe
Q 043381          254 TAPPTAKIAPPSFYLLFVVY-RQVPSPGTWVQI  285 (286)
Q Consensus       254 ~~P~~~~vappG~YmLFv~~-~GvPS~a~~V~i  285 (286)
                      ++|+|++|+|||||||||++ +||||+|+||+|
T Consensus        68 ~~P~~~~vaPPG~YmLFvv~~~GvPS~a~~V~v  100 (102)
T d1k3ia1          68 QVPSDSGVALPGYWMLFVMNSAGVPSVASTIRV  100 (102)
T ss_dssp             ECCSCTTTSCSEEEEEEEECTTSCBCCCEEEEE
T ss_pred             EcCCCCCcCCCcCEEEEEECCCCCcccCEEEEe
Confidence            99999999999999999997 799999999998
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure