Citrus Sinensis ID: 043392

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490------
MGEISSPASTAISAPPSPLPDSAPRTPRSPLASRLMTPIVSPMKKAITSVHGYLEEVGQFTKLDPQDAWLPITESRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFGGTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIGAITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISSLSSFQIFAMPVFDNLEFKYTSKYNKPCPWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIALPITLAYPCFMWIHIRKPTTYSAIWGLNWALGILGMVLSILAVIGATWSLATMGIEFHFFKAQ
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccEEEEHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
cccEEcccccccccccccccccccccccccccHHHccccccHHHHHHHHHccccHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccEEEEEEEEcHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
mgeisspastaisappsplpdsaprtprsplasrlmtpivspmKKAITSVHGYLEevgqftkldpqdawlpitesrngnayySAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLhesesgtrySRYLRLSMAAFGGTCVILVMIGGGTLKTFFEIVCGasetcnvtrlTTVEWYLVFICAAVVLaqlpnlnsiaGVSLIGAITAVSYCTIIWVVSVIkdrpvgvsyepvkeisDVATIFSILNSLGIIAFAFRGHNLVLevqgtmpstakkpsripmwrgVKFAYLIIAMCLFplaiggysaygnlANDIYDaycqmpgnegmfDALHkyhnhdtskVLLGLTSLFVVISSLSSfqifampvfdnlefkytskynkpcpwwlrsgirVFFGSVEFFISAALPFLRNLAALIGGialpitlaypcfmwihirkpttysAIWGLNWALGILGMVLSILAVIGATWSLATMGIEFHFFKAQ
mgeisspastaisappsplpdsaprtpRSPLasrlmtpivspMKKAITSVHGYLEEVGQFTKLDPQDAWLPITESRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFGGTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIGAITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGtmpstakkpsripmWRGVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISSLSSFQIFAMPVFDNLEFKYTSKYNKPCPWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIALPITLAYPCFMWIHIRKPTTYSAIWGLNWALGILGMVLSILAVIGATWSLATMGIEFHFFKAQ
MGEIsspastaisappsplpdsaprtpRSPLASRLMTPIVSPMKKAITSVHGYLEEVGQFTKLDPQDAWLPITESRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFGGTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIGAITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTslfvvisslssfqiFAMPVFDNLEFKYTSKYNKPCPWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIALPITLAYPCFMWIHIRKPTTYSAIWGLNWALGILGMVLSILAVIGATWSLATMGIEFHFFKAQ
******************************************MKKAITSVHGYLEEVGQFTKLDPQDAWLPITESRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFGGTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIGAITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTM*******SRIPMWRGVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISSLSSFQIFAMPVFDNLEFKYTSKYNKPCPWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIALPITLAYPCFMWIHIRKPTTYSAIWGLNWALGILGMVLSILAVIGATWSLATMGIEFHFF***
**************************************************************************SRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFGGTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIGAITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISSLSSFQIFAMPVFDNLEFKYTSKYNKPCPWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIALPITLAYPCFMWIHIRKPTTYSAIWGLNWALGILGMVLSILAVIGATWSLATMGIEFHFFK**
****************************SPLASRLMTPIVSPMKKAITSVHGYLEEVGQFTKLDPQDAWLPITESRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFGGTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIGAITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGT********SRIPMWRGVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISSLSSFQIFAMPVFDNLEFKYTSKYNKPCPWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIALPITLAYPCFMWIHIRKPTTYSAIWGLNWALGILGMVLSILAVIGATWSLATMGIEFHFFKAQ
******************************LASRLMTPIVSPMKKAITSVH***************DAWLPITESRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFGGTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIGAITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISSLSSFQIFAMPVFDNLEFKYTSKYNKPCPWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIALPITLAYPCFMWIHIRKPTTYSAIWGLNWALGILGMVLSILAVIGATWSLATMGIEFHFF***
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MGEISSPASTAISAPPSPLPDSAPRTPRSPLASRLMTPIVSPMKKAITSVHGYLEEVGQFTKLDPQDAWLPITESRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFGGTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIGAITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISSLSSFQIFAMPVFDNLEFKYTSKYNKPCPWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIALPITLAYPCFMWIHIRKPTTYSAIWGLNWALGILGMVLSILAVIGATWSLATMGIEFHFFKAQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query496 2.2.26 [Sep-21-2011]
Q9SX98519 Lysine histidine transpor yes no 0.963 0.921 0.538 1e-153
Q84WE9478 Lysine histidine transpor no no 0.828 0.859 0.42 2e-95
Q9FKS8446 Lysine histidine transpor no no 0.838 0.932 0.369 2e-76
Q9SS86455 Lysine histidine transpor no no 0.806 0.879 0.377 2e-73
Q9C733453 Lysine histidine transpor no no 0.838 0.918 0.364 4e-72
Q9LRB5441 Lysine histidine transpor no no 0.822 0.925 0.357 2e-71
O22719451 Lysine histidine transpor no no 0.788 0.866 0.364 9e-70
Q9SR44441 Lysine histidine transpor no no 0.824 0.927 0.352 5e-66
Q9C6M2440 Lysine histidine transpor no no 0.796 0.897 0.350 1e-59
Q9C9J0448 Lysine histidine transpor no no 0.810 0.897 0.318 2e-48
>sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1 Back     alignment and function desciption
 Score =  543 bits (1399), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 280/520 (53%), Positives = 360/520 (69%), Gaps = 42/520 (8%)

Query: 4   ISSPASTAISAP------------PSPLPDSAPRTPRSPLASRLMTPIVSPMKKAITSVH 51
           IS PA+  +S P            P+  P SA  TP S ++ R ++PI +PMK+ + ++ 
Sbjct: 10  ISIPATPRVSTPEILTPSGQRSPRPATKPSSATWTPTSFISPRFLSPIGTPMKRVLVNMK 69

Query: 52  GYLEEVGQFTKLDPQDAWLPITESRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWG 111
           GYLEEVG  TKL+PQDAWLPITESRNGNA+Y+AFH L++G+G QALVLP+AF  LGW+WG
Sbjct: 70  GYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALVLPVAFAFLGWSWG 129

Query: 112 IICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG-----------------G 154
           I+ L + + WQLYTLW+L+QLHE+  G RY+RY+ L+ AAFG                 G
Sbjct: 130 ILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAG 189

Query: 155 TCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGV 214
           T   L++IGG T+K FF+IVCG    C    LTTVEWYLVF    +VL+QLPNLNSIAG+
Sbjct: 190 TATALILIGGETMKLFFQIVCG--PLCTSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGL 247

Query: 215 SLIGAITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHN 274
           SLIGA+TA++Y T++WV+SV + RP  +SYEP+   S   ++F++LN+LGIIAFAFRGHN
Sbjct: 248 SLIGAVTAITYSTMVWVLSVSQPRPATISYEPLSMPSTSGSLFAVLNALGIIAFAFRGHN 307

Query: 275 LVLEVQGTMPSTAKKPSRIPMWRGVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAYCQ 334
           LVLE+Q TMPST K P+ +PMWRG K +Y +IA+C+FP++IGG+ AYGNL          
Sbjct: 308 LVLEIQSTMPSTFKHPAHVPMWRGAKISYFLIALCIFPISIGGFWAYGNL---------- 357

Query: 335 MPGNEGMFDALHKYHNHDTSKVLLGLTSLFVVISSLSSFQIFAMPVFDNLEFKYTSKYNK 394
           MP   GM  AL+ +H HD  + LL    L VV S LSSFQI++MP FD+ E  YTS+ NK
Sbjct: 358 MPSG-GMLAALYAFHIHDIPRGLLATAFLLVVFSCLSSFQIYSMPAFDSFEAGYTSRTNK 416

Query: 395 PCPWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIALPITLAYPCFMWIHIRKPTTY 454
           PC  W+RSG RVFFG V FFI  ALPFL +LA L+GG+ LP+T AYPCFMW+ I+KP  Y
Sbjct: 417 PCSIWVRSGFRVFFGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPAKY 476

Query: 455 SAIWGLNWALGILGMVLSILAVIGATWSLATMGIEFHFFK 494
           S  W  +W LG LG+  S+   IG  WS+ T G++  FFK
Sbjct: 477 SFNWYFHWGLGWLGVAFSLAFSIGGIWSMVTNGLKLKFFK 516
Amino acid transporter.
Arabidopsis thaliana (taxid: 3702)
>sp|Q84WE9|LHTL7_ARATH Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=2 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2 Back     alignment and function description
>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2 Back     alignment and function description
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description
>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1 Back     alignment and function description
>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query496
255539144524 amino acid transporter, putative [Ricinu 0.959 0.908 0.716 0.0
224061917520 lysine/histidine transporter [Populus tr 0.953 0.909 0.717 0.0
302141680 1030 unnamed protein product [Vitis vinifera] 0.951 0.458 0.689 0.0
225459826515 PREDICTED: lysine histidine transporter- 0.951 0.916 0.689 0.0
356509604497 PREDICTED: LOW QUALITY PROTEIN: lysine h 0.919 0.917 0.660 0.0
356517948505 PREDICTED: lysine histidine transporter- 0.915 0.899 0.652 1e-180
452593518 ORF [Lilium longiflorum] 0.945 0.905 0.611 1e-172
297744933 759 unnamed protein product [Vitis vinifera] 0.927 0.606 0.607 1e-169
359496346526 PREDICTED: lysine histidine transporter- 0.927 0.874 0.609 1e-168
414585878527 TPA: hypothetical protein ZEAMMB73_14919 0.947 0.891 0.572 1e-164
>gi|255539144|ref|XP_002510637.1| amino acid transporter, putative [Ricinus communis] gi|223551338|gb|EEF52824.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/515 (71%), Positives = 417/515 (80%), Gaps = 39/515 (7%)

Query: 9   STAISAPPS----------PLPDSAPRTPRSPLASRLMTPIVSPMKKAITSVHGYLEEVG 58
           ST ISAPPS          PL D AP+TP+SPLASRLMTPI SP+KKAITS+  YLEEVG
Sbjct: 22  STVISAPPSQLHCPSMARSPLLDIAPKTPKSPLASRLMTPIASPVKKAITSMQCYLEEVG 81

Query: 59  QFTKLDPQDAWLPITESRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLV 118
            FTKLDPQ+AWLPITESR+GNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWG++ L L+
Sbjct: 82  HFTKLDPQEAWLPITESRSGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGLVSLSLI 141

Query: 119 FIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAF-----------------GGTCVILVM 161
           F+WQLYTLWLLIQLHESESG RYSRYLRLSMAAF                 GGTCV L+M
Sbjct: 142 FMWQLYTLWLLIQLHESESGMRYSRYLRLSMAAFGEKLGKLLSLFPIMYLSGGTCVTLIM 201

Query: 162 IGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIGAIT 221
           IGGGT+K  F+IVCG  ETCN+  L T EWYL+F C+A+V+AQLPNLNSIAGVSLIGA+T
Sbjct: 202 IGGGTMKILFQIVCG--ETCNLKPLLTTEWYLLFTCSAIVIAQLPNLNSIAGVSLIGAVT 259

Query: 222 AVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQG 281
           AVSYCT+IWVVS+I+ RP  VS++P +  SD A + SI N+LGIIAFAFRGHNLVLE+QG
Sbjct: 260 AVSYCTLIWVVSIIQGRPTDVSHDPPEANSDTARLCSIFNALGIIAFAFRGHNLVLEIQG 319

Query: 282 TMPSTAKKPSRIPMWRGVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGM 341
           TMPS+AK+PSR+PMWRGVKFAYLIIAMCLFPLAIGGY AYGNL          +PGN GM
Sbjct: 320 TMPSSAKQPSRLPMWRGVKFAYLIIAMCLFPLAIGGYWAYGNL----------IPGNGGM 369

Query: 342 FDALHKYHNHDTSKVLLGLTSLFVVISSLSSFQIFAMPVFDNLEFKYTSKYNKPCPWWLR 401
            +AL+K+H HDTSK LLGLTSL VVI+ LSSFQI+AMPVFDNLE +YTSK NKPCP WLR
Sbjct: 370 LNALYKFHGHDTSKTLLGLTSLLVVINCLSSFQIYAMPVFDNLELRYTSKMNKPCPRWLR 429

Query: 402 SGIRVFFGSVEFFISAALPFLRNLAALIGGIALPITLAYPCFMWIHIRKPTTYSAIWGLN 461
           S IR+FFG + FFI+ A PFL +LA LIGGIALP+TLAYPCFMWI ++KP  Y AIW LN
Sbjct: 430 SVIRMFFGCLAFFIAVAFPFLPSLAGLIGGIALPVTLAYPCFMWIIMKKPHKYGAIWCLN 489

Query: 462 WALGILGMVLSILAVIGATWSLATMGIEFHFFKAQ 496
           W LG+ GMVLSIL V  A W++ TMGIE HFFK Q
Sbjct: 490 WTLGLFGMVLSILVVAAAIWTIVTMGIEIHFFKPQ 524

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224061917|ref|XP_002300663.1| lysine/histidine transporter [Populus trichocarpa] gi|222842389|gb|EEE79936.1| lysine/histidine transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302141680|emb|CBI18883.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225459826|ref|XP_002284824.1| PREDICTED: lysine histidine transporter-like 8 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356509604|ref|XP_003523537.1| PREDICTED: LOW QUALITY PROTEIN: lysine histidine transporter-like 8-like [Glycine max] Back     alignment and taxonomy information
>gi|356517948|ref|XP_003527647.1| PREDICTED: lysine histidine transporter-like 8-like [Glycine max] Back     alignment and taxonomy information
>gi|452593|dbj|BAA04838.1| ORF [Lilium longiflorum] Back     alignment and taxonomy information
>gi|297744933|emb|CBI38472.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359496346|ref|XP_003635214.1| PREDICTED: lysine histidine transporter-like 8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|414585878|tpg|DAA36449.1| TPA: hypothetical protein ZEAMMB73_149198 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query496
TAIR|locus:2015383519 AT1G47670 [Arabidopsis thalian 0.909 0.868 0.534 3.9e-140
TAIR|locus:2132816478 LHT7 "LYS/HIS transporter 7" [ 0.834 0.866 0.407 7.2e-84
TAIR|locus:2154815446 LHT1 "lysine histidine transpo 0.506 0.562 0.428 4.7e-72
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.514 0.578 0.425 6e-72
TAIR|locus:2008154453 AT1G48640 [Arabidopsis thalian 0.514 0.562 0.413 6e-72
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.514 0.578 0.402 1.8e-70
TAIR|locus:2008605441 AT1G67640 "AT1G67640" [Arabido 0.526 0.591 0.394 2e-69
TAIR|locus:2008435451 AT1G61270 [Arabidopsis thalian 0.788 0.866 0.350 1.2e-60
TAIR|locus:2031215440 AT1G25530 [Arabidopsis thalian 0.514 0.579 0.402 2.9e-60
TAIR|locus:2013056448 AT1G71680 [Arabidopsis thalian 0.526 0.582 0.368 3.3e-55
TAIR|locus:2015383 AT1G47670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1371 (487.7 bits), Expect = 3.9e-140, P = 3.9e-140
 Identities = 257/481 (53%), Positives = 334/481 (69%)

Query:    31 LASRLMTPIVSPMKKAITSVHGYLEEVGQFTKLDPQDAWLPITESRNGNAYYSAFHTLSS 90
             ++ R ++PI +PMK+ + ++ GYLEEVG  TKL+PQDAWLPITESRNGNA+Y+AFH L++
Sbjct:    49 ISPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNA 108

Query:    91 GIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMA 150
             G+G QALVLP+AF  LGW+WGI+ L + + WQLYTLW+L+QLHE+  G RY+RY+ L+ A
Sbjct:   109 GVGFQALVLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQA 168

Query:   151 AFG-----------------GTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYL 193
             AFG                 GT   L++IGG T+K FF+IVCG    C    LTTVEWYL
Sbjct:   169 AFGERLGVWLALFPTVYLSAGTATALILIGGETMKLFFQIVCGP--LCTSNPLTTVEWYL 226

Query:   194 VFICAAVVLAQLPNLNSIAGVSLIGAITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDV 253
             VF    +VL+QLPNLNSIAG+SLIGA+TA++Y T++WV+SV + RP  +SYEP+   S  
Sbjct:   227 VFTSLCIVLSQLPNLNSIAGLSLIGAVTAITYSTMVWVLSVSQPRPATISYEPLSMPSTS 286

Query:   254 ATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYLIIAMCLFPL 313
              ++F++LN+LGIIAFAFRGHNLVLE+Q TMPST K P+ +PMWRG K +Y +IA+C+FP+
Sbjct:   287 GSLFAVLNALGIIAFAFRGHNLVLEIQSTMPSTFKHPAHVPMWRGAKISYFLIALCIFPI 346

Query:   314 AIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTXXXXXXXXXXXX 373
             +IGG+ AYGNL          MP   GM  AL+ +H HD  + LL               
Sbjct:   347 SIGGFWAYGNL----------MPSG-GMLAALYAFHIHDIPRGLLATAFLLVVFSCLSSF 395

Query:   374 XXFAMPVFDNLEFKYTSKYNKPCPWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIA 433
               ++MP FD+ E  YTS+ NKPC  W+RSG RVFFG V FFI  ALPFL +LA L+GG+ 
Sbjct:   396 QIYSMPAFDSFEAGYTSRTNKPCSIWVRSGFRVFFGFVSFFIGVALPFLSSLAGLLGGLT 455

Query:   434 LPITLAYPCFMWIHIRKPTTYSAIWGLNWALGILGMVLSILAVIGATWSLATMGIEFHFF 493
             LP+T AYPCFMW+ I+KP  YS  W  +W LG LG+  S+   IG  WS+ T G++  FF
Sbjct:   456 LPVTFAYPCFMWVLIKKPAKYSFNWYFHWGLGWLGVAFSLAFSIGGIWSMVTNGLKLKFF 515

Query:   494 K 494
             K
Sbjct:   516 K 516
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0010075 "regulation of meristem growth" evidence=RCA
TAIR|locus:2132816 LHT7 "LYS/HIS transporter 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SX98LHTL8_ARATHNo assigned EC number0.53840.96370.9210yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query496
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 7e-45
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 2e-05
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  162 bits (411), Expect = 7e-45
 Identities = 103/437 (23%), Positives = 182/437 (41%), Gaps = 59/437 (13%)

Query: 76  RNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHE- 134
              +A+ + F+ + + IG   L LP AF  LGW  G+I L++V +  LYTL LL+Q  + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 135 --SESGTRYSRYLRLSMAAFG----------------GTCVILVMIGGGTLKTFFEIVCG 176
                G R   Y  L    FG                G C+  ++  G  L   F+    
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 177 ASETCNVTRLTTVEWYLVFICAAVVLAQLPNLNSIAGVSLIGAITAVSYCTIIWVVSV-- 234
                 V       + ++F    + L+ +PNL++++ +SL+ A+ +  Y  I+ +     
Sbjct: 121 TCHISLVY------FIIIFGLIFIPLSFIPNLSALSILSLVAAV-SSLYIVILVLSVAEL 173

Query: 235 IKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIP 294
                 GV     K    +A +F    ++GII FAF GH ++L +Q TM S +K      
Sbjct: 174 GVLTAQGVGSLGAKTNIKLARLFL---AIGIIVFAFEGHAVLLPIQNTMKSPSKFK---A 227

Query: 295 MWRGVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTS 354
           M + +  A +I+ +    + + GY A+GN                     L      D  
Sbjct: 228 MTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGN---------------ILLNLPKSDWL 272

Query: 355 KVLLGLTSLFVVISSLSSFQIFAMPVFDNLE----FKYTSKYNKPCPWWLRSGIRVFFGS 410
             +    +L +V+  L S+ + A P+   +E     K  S  + P    LR  IR     
Sbjct: 273 IDIA---NLLLVLHLLLSYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVV 329

Query: 411 VEFFISAALPFLRNLAALIGGIA-LPITLAYPCFMWIHIRKPTTYSAIWGLNWALGILGM 469
           + + I+ ++PFL +  +L+G  +  P+T   P    + ++K    S      W   IL +
Sbjct: 330 ITYLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEK--LWKPDILDV 387

Query: 470 VLSILAVIGATWSLATM 486
           +  ++ ++   + +A +
Sbjct: 388 ICIVIGLLLMAYGVAGL 404

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 496
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PLN03074473 auxin influx permease; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.97
PRK10483414 tryptophan permease; Provisional 99.9
PRK09664415 tryptophan permease TnaB; Provisional 99.89
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.89
PRK15132403 tyrosine transporter TyrP; Provisional 99.89
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.85
PRK13629443 threonine/serine transporter TdcC; Provisional 99.75
TIGR00814397 stp serine transporter. The HAAAP family includes 99.7
PRK10655438 potE putrescine transporter; Provisional 99.08
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.01
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.01
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.0
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 98.98
TIGR00909429 2A0306 amino acid transporter. 98.98
PRK10644445 arginine:agmatin antiporter; Provisional 98.96
PRK11021410 putative transporter; Provisional 98.94
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 98.92
PRK10249458 phenylalanine transporter; Provisional 98.83
PRK15049499 L-asparagine permease; Provisional 98.83
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 98.78
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 98.78
PRK10746461 putative transport protein YifK; Provisional 98.75
PRK11387471 S-methylmethionine transporter; Provisional 98.73
TIGR00913478 2A0310 amino acid permease (yeast). 98.7
PRK10580457 proY putative proline-specific permease; Provision 98.69
PRK11357445 frlA putative fructoselysine transporter; Provisio 98.68
TIGR00906557 2A0303 cationic amino acid transport permease. 98.66
TIGR00930 953 2a30 K-Cl cotransporter. 98.65
PRK10238456 aromatic amino acid transporter; Provisional 98.62
KOG1287479 consensus Amino acid transporters [Amino acid tran 98.6
TIGR00908442 2A0305 ethanolamine permease. The three genes used 98.59
PRK10836489 lysine transporter; Provisional 98.57
TIGR00911501 2A0308 L-type amino acid transporter. 98.55
PRK10197446 gamma-aminobutyrate transporter; Provisional 98.51
PF03845320 Spore_permease: Spore germination protein; InterPr 98.39
COG0531466 PotE Amino acid transporters [Amino acid transport 98.18
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.13
TIGR00907482 2A0304 amino acid permease (GABA permease). 98.01
PRK15238496 inner membrane transporter YjeM; Provisional 97.96
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 97.93
COG0833541 LysP Amino acid transporters [Amino acid transport 97.8
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 97.65
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 97.64
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 97.43
KOG1286554 consensus Amino acid transporters [Amino acid tran 97.34
PRK11375484 allantoin permease; Provisional 97.19
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 97.11
KOG3832319 consensus Predicted amino acid transporter [Genera 97.07
COG3949349 Uncharacterized membrane protein [Function unknown 95.85
KOG1289550 consensus Amino acid transporters [Amino acid tran 95.64
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 95.54
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 94.39
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 94.34
PRK09442483 panF sodium/panthothenate symporter; Provisional 94.19
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 93.58
TIGR00813407 sss transporter, SSS family. have different number 92.82
COG0591493 PutP Na+/proline symporter [Amino acid transport a 92.67
PRK11017404 codB cytosine permease; Provisional 89.14
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 87.4
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 82.46
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-61  Score=493.87  Aligned_cols=391  Identities=35%  Similarity=0.657  Sum_probs=346.1

Q ss_pred             CCCCCCcccccccCCCchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhcc---ccccCC
Q 043392           63 LDPQDAWLPITESRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLH---ESESGT  139 (496)
Q Consensus        63 ~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~---~~~~~~  139 (496)
                      +.++|+|.+.+++|+++++++++|.++.++|.|+|+||||++++||+.|+++++++++++.||.++|.+|.   +...++
T Consensus        23 ~~~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~  102 (437)
T KOG1303|consen   23 KSDVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGK  102 (437)
T ss_pred             ccccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence            34677888888999999999999999999999999999999999999999999999999999999999984   445677


Q ss_pred             ccCcHHHHHHHHhh----------------hHHHHHHHHHhhHHHHHHHHhhcCCCcccccccccchhhhhhHHHHHHhh
Q 043392          140 RYSRYLRLSMAAFG----------------GTCVILVMIGGGTLKTFFEIVCGASETCNVTRLTTVEWYLVFICAAVVLA  203 (496)
Q Consensus       140 ~~~sy~~l~~~~fG----------------G~~i~y~i~~g~~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~~~~pl~  203 (496)
                      |+++|.|+++++||                |.|+.|++.+||++..+++..|.+.     ..++.+.|+++++++++|++
T Consensus       103 r~~~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~-----~~l~~~~f~iif~~i~~~~s  177 (437)
T KOG1303|consen  103 RRYRYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLND-----NSLDKQYFIIIFGLIVLPLS  177 (437)
T ss_pred             cCCChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----ccccceehhhhHHHHHHHHH
Confidence            88999999999999                9999999999999999998877621     14446899999999999999


Q ss_pred             cCCCCchhhHHHHHHHHHHHHHHHhhheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcC
Q 043392          204 QLPNLNSIAGVSLIGAITAVSYCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTM  283 (496)
Q Consensus       204 ~l~~l~~L~~~S~~~~~~~~~~~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m  283 (496)
                      ++||+++++++|..|+++++.|.++.++.++.+|........+.....+...   .++++|+++|||+||+++||||++|
T Consensus       178 ~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~---~f~a~g~iaFaf~gH~v~peIq~tM  254 (437)
T KOG1303|consen  178 QLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPT---VFTALGIIAFAYGGHAVLPEIQHTM  254 (437)
T ss_pred             HCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcc---hhhhhhheeeeecCCeeeeehHhhc
Confidence            9999999999999999999999999999988887443222111111111111   1789999999999999999999999


Q ss_pred             CCCCCCCcccCcchhhhhHHHHHHHHHHhhhhhhhhcccCccccccccccCCCCCCChhhhhhhccCCCchhHHHHHHHH
Q 043392          284 PSTAKKPSRIPMWRGVKFAYLIIAMCLFPLAIGGYSAYGNLANDIYDAYCQMPGNEGMFDALHKYHNHDTSKVLLGLTSL  363 (496)
Q Consensus       284 ~~~~k~P~~~~m~~~v~~s~~i~~~~Y~~~g~~GY~~fG~~~~~~~~~i~~~~~~~~il~~~~~~~g~~~~~~l~~ia~~  363 (496)
                          |+|.+  |+|++.+++.+++++|+++++.||++|||          +++  +|++.++      +.+.|+.+.+++
T Consensus       255 ----k~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~----------~~~--~~il~s~------~~p~~~~~~ani  310 (437)
T KOG1303|consen  255 ----KSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGD----------SVP--DNILLSL------QPPTWLIALANI  310 (437)
T ss_pred             ----CCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhcc----------ccc--hhhhhcc------cCchhHHHHHHH
Confidence                66766  77999999999999999999999999999          898  7999987      368899999999


Q ss_pred             HHHHHHhhhhccccchhHHHHHHhhhccCCC-C-CcchhHHHHHHHHHHHHHHHHHhCcChHHHHHHHhhhHh-hhhhhH
Q 043392          364 FVVISSLSSFQIFAMPVFDNLEFKYTSKYNK-P-CPWWLRSGIRVFFGSVEFFISAALPFLRNLAALIGGIAL-PITLAY  440 (496)
Q Consensus       364 ~~~~~~l~sypl~~~p~~~~~e~~~~~~~~~-~-~~~~~r~~~r~~~~~~~~~iA~~iP~~~~v~~lvGa~~~-~l~fil  440 (496)
                      ++.+|++.+|+++++|+++.+|+....++++ + +..+.|.+.|+.+++.++++|+.+|+|+++++++||+.. ++++++
T Consensus       311 ~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~il  390 (437)
T KOG1303|consen  311 LIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFIL  390 (437)
T ss_pred             HHHHHHhhhhhhhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998755441 1 235789999999999999999999999999999999999 999999


Q ss_pred             hHHHHHHHhCCCCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 043392          441 PCFMWIHIRKPTTYSAIWGLNWAL-GILGMVLSILAVIGATWSLAT  485 (496)
Q Consensus       441 P~ll~lk~~~~~~~~~~~~~~~~l-~~~g~~~~v~~~~~si~~ii~  485 (496)
                      ||+||++++|+++++.+|+++|.+ .++|+++++...++++++++.
T Consensus       391 P~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~  436 (437)
T KOG1303|consen  391 PCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLII  436 (437)
T ss_pred             HHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence            999999999999999999999999 799999999999999999885

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query496
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.4
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.0
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 98.76
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 97.47
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 93.93
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 92.94
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 83.76
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.40  E-value=8.8e-11  Score=121.95  Aligned_cols=236  Identities=15%  Similarity=0.072  Sum_probs=132.0

Q ss_pred             cCCCchhHHHHHHHhhhhhhhhchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhccccccCCccCcHHHHHHHHhh-
Q 043392           75 SRNGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWGIICLLLVFIWQLYTLWLLIQLHESESGTRYSRYLRLSMAAFG-  153 (496)
Q Consensus        75 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~giill~~~~~l~~~t~~lL~~~~~~~~~~~~~sy~~l~~~~fG-  153 (496)
                      +|+-+.++.++..+++++|+|++.+|...++.|.. +++..++.++........+.|...+.+.  .-.+.+..++.+| 
T Consensus         7 ~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~--~Gg~y~~~~~~~G~   83 (445)
T 3l1l_A            7 AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPS--PGGSYAYARRCFGP   83 (445)
T ss_dssp             CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC--TTTHHHHHHHHSCH
T ss_pred             CCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCC--CCCchhhHHhHcCC
Confidence            46778899999999999999999999999898874 7777888888888888888887554322  2356666788888 


Q ss_pred             --hHHHHHHHHHhh------HHHHHHHHhhcCCCcccccccccchhhhhhHH-HHHHhhcCCCCchhhHHHHHHHHHHHH
Q 043392          154 --GTCVILVMIGGG------TLKTFFEIVCGASETCNVTRLTTVEWYLVFIC-AAVVLAQLPNLNSIAGVSLIGAITAVS  224 (496)
Q Consensus       154 --G~~i~y~i~~g~------~l~~~~~~~~~~~~~~~~~~l~~~~~~ii~~~-~~~pl~~l~~l~~L~~~S~~~~~~~~~  224 (496)
                        |...++....+.      ......+......+.+ ..+  ...+.+...+ +++-..-.+..+....+..+.....+.
T Consensus        84 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~  160 (445)
T 3l1l_A           84 FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-KDP--WVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI  160 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-GSH--HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-ccc--HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence              444433322221      1111111111100101 000  0111111111 111111223444444444333332222


Q ss_pred             HHHhhheeeeeccCCCCcccCccccccchhhHHHHHHHHHHHHHhhccccchHhHhhcCCCCCCCCcccCcchhhhhHHH
Q 043392          225 YCTIIWVVSVIKDRPVGVSYEPVKEISDVATIFSILNSLGIIAFAFRGHNLVLEVQGTMPSTAKKPSRIPMWRGVKFAYL  304 (496)
Q Consensus       225 ~~~ii~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~faf~~h~~v~~I~~~m~~~~k~P~~~~m~~~v~~s~~  304 (496)
                      ..+++++..+...+..+. ..++. ......+.++..++....|+|.|...+....+|+    |+|++ +..|++..+..
T Consensus       161 ~~~~~~i~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r-~ip~a~~~~~~  233 (445)
T 3l1l_A          161 PIVGIAVFGWFWFRGETY-MAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIATIGGVL  233 (445)
T ss_dssp             HHHHHHHTTSTTCCCCCC-CCC------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhChhhc-ccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCccc-cccHHHHHHHH
Confidence            222222222222111111 01111 1111235578889999999999999999999999    67753 33488889999


Q ss_pred             HHHHHHHhhhhhhhhcccC
Q 043392          305 IIAMCLFPLAIGGYSAYGN  323 (496)
Q Consensus       305 i~~~~Y~~~g~~GY~~fG~  323 (496)
                      ++.++|....+..+...+.
T Consensus       234 ~~~~~y~~~~~~~~~~~~~  252 (445)
T 3l1l_A          234 IAAVCYVLSTTAIMGMIPN  252 (445)
T ss_dssp             HHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHHHhcCCH
Confidence            9999999888776666655
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00