Citrus Sinensis ID: 043404

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
DETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISGMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSS
cHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHcccccccc
cHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcHHcccHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHccccc
DETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRlglayhfePEIRNILRNIHNHnkdynwrkenlYATSLEFRLLrqhgypvsqevfsgfkddkvgficddFKGILSLHEAsyyslegesIMEEAWQFTSKHLKEMMitsnskeeDVFVAEQAKRALelplhwkvpmleARWFIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDisgmgiafepqFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKwyhskytpKLEEYLENGLVSITGPLIITISylsgtnpiIKKELEflesnpdivhwSSKIFRLQDDLGTSS
detykrraeelkgkvktaikdvtepldqLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRAlelplhwkvpMLEARWFIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISGMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIfrlqddlgtss
DETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEirnilrnihnhnKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISGMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSS
*****************AIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMI*******DVFVAEQAKRALELPLHWKVPMLEARWFIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISGMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRL********
*ETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISGMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLG***
**********LKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISGMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSS
DETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISGMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLG***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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DETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISGMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query393 2.2.26 [Sep-21-2011]
Q8L5K3 606 (R)-limonene synthase 1 O N/A no 0.997 0.646 0.882 0.0
Q6PWU2 590 (-)-alpha-terpineol synth yes no 0.982 0.654 0.521 1e-119
Q93X23597 Myrcene synthase, chlorop N/A no 0.982 0.646 0.514 1e-116
B3TPQ7592 Alpha-terpineol synthase, N/A no 0.979 0.650 0.483 1e-105
Q8L5K4600 Gamma-terpinene synthase, N/A no 0.979 0.641 0.473 1e-100
Q2XSC4538 Exo-alpha-bergamotene syn N/A no 0.974 0.711 0.449 1e-100
Q9AR86595 Isoprene synthase, chloro N/A no 0.984 0.650 0.460 9e-95
Q50L36595 Isoprene synthase, chloro N/A no 0.984 0.650 0.456 8e-94
Q7XAS7595 Isoprene synthase, chloro N/A no 0.984 0.650 0.456 8e-94
A7IZZ2615 (+)-alpha-pinene synthase N/A no 0.992 0.634 0.461 4e-92
>sp|Q8L5K3|RLC1_CITLI (R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1 Back     alignment and function desciption
 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/418 (88%), Positives = 383/418 (91%), Gaps = 26/418 (6%)

Query: 1   DETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNK 60
           DE YKRRAEEL+GKVK AIKDV EPLDQLELIDNLQRLGLA+ FE EIRNIL NI+N+NK
Sbjct: 77  DEAYKRRAEELRGKVKIAIKDVIEPLDQLELIDNLQRLGLAHRFETEIRNILNNIYNNNK 136

Query: 61  DYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKGILSLHEASYYSL 120
           DYNWRKENLYATSLEFRLLRQHGYPVSQEVF+GFKDD+ GFICDDFKGILSLHEASYYSL
Sbjct: 137 DYNWRKENLYATSLEFRLLRQHGYPVSQEVFNGFKDDQGGFICDDFKGILSLHEASYYSL 196

Query: 121 EGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFIHV 180
           EGESIMEEAWQFTSKHLKE+MI+ N  EEDVFVAEQAKRALELPLHWKVPMLEARWFIH+
Sbjct: 197 EGESIMEEAWQFTSKHLKEVMISKN-MEEDVFVAEQAKRALELPLHWKVPMLEARWFIHI 255

Query: 181 YEKREDKNHLLLELAKLEFNTLQAIYQEELKDISG------------------------- 215
           YE+REDKNHLLLELAK+EFNTLQAIYQEELK+ISG                         
Sbjct: 256 YERREDKNHLLLELAKMEFNTLQAIYQEELKEISGWWKDTGLGEKLSFARNRLVASFLWS 315

Query: 216 MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPG 275
           MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELE+FTDAVERWDINYALKHLPG
Sbjct: 316 MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVERWDINYALKHLPG 375

Query: 276 YMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEE 335
           YMKMCFLALYNFVNEFAYYVLKQQDFD+LLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEE
Sbjct: 376 YMKMCFLALYNFVNEFAYYVLKQQDFDLLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEE 435

Query: 336 YLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSS 393
           YLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSS
Sbjct: 436 YLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSS 493

Citrus limon (taxid: 2708)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 2EC: 0
>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1 Back     alignment and function description
>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1 Back     alignment and function description
>sp|B3TPQ7|ATESY_MAGGA Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora PE=1 SV=1 Back     alignment and function description
>sp|Q8L5K4|GTPS_CITLI Gamma-terpinene synthase, chloroplastic OS=Citrus limon PE=1 SV=1 Back     alignment and function description
>sp|Q2XSC4|LABER_LAVAN Exo-alpha-bergamotene synthase OS=Lavandula angustifolia PE=1 SV=1 Back     alignment and function description
>sp|Q9AR86|ISPS_POPCN Isoprene synthase, chloroplastic OS=Populus canescens GN=ISPS PE=1 SV=1 Back     alignment and function description
>sp|Q50L36|ISPS_POPAL Isoprene synthase, chloroplastic OS=Populus alba GN=ISPS PE=1 SV=1 Back     alignment and function description
>sp|Q7XAS7|ISPS_POPTM Isoprene synthase, chloroplastic OS=Populus tremuloides GN=ISPS PE=3 SV=1 Back     alignment and function description
>sp|A7IZZ2|TPS2_CANSA (+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query393
49659437 608 d-limonene synthase [Citrus unshiu] 1.0 0.646 0.930 0.0
21435708 606 (+)-limonene synthase 2 [Citrus limon] 0.997 0.646 0.889 0.0
41017756 606 RecName: Full=(R)-limonene synthase 1; A 0.997 0.646 0.882 0.0
209446863 607 limonene synthase [Poncirus trifoliata] 1.0 0.647 0.825 0.0
49659435 606 d-limonene synthase [Citrus unshiu] 0.997 0.646 0.801 0.0
394556815 612 geraniol synthase [Citrus jambhiri] 0.997 0.640 0.820 0.0
322424201 607 limonene synthase [Murraya paniculata] 0.987 0.639 0.692 1e-165
45934586 590 (-)-a-terpineol synthase [Vitis vinifera 0.982 0.654 0.521 1e-117
75223392 590 RecName: Full=(-)-alpha-terpineol syntha 0.982 0.654 0.521 1e-117
121490210 597 pinene synthase [Quercus ilex] 0.982 0.646 0.514 1e-115
>gi|49659437|dbj|BAD27257.1| d-limonene synthase [Citrus unshiu] Back     alignment and taxonomy information
 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/419 (93%), Positives = 392/419 (93%), Gaps = 26/419 (6%)

Query: 1   DETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNK 60
           DETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNK
Sbjct: 77  DETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNK 136

Query: 61  DYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKGILSLHEASYYSL 120
           DYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKGILSLHEASYYSL
Sbjct: 137 DYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKGILSLHEASYYSL 196

Query: 121 EGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWK-VPMLEARWFIH 179
           EGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWK VPMLEARWFIH
Sbjct: 197 EGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKKVPMLEARWFIH 256

Query: 180 VYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISG------------------------ 215
           VYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISG                        
Sbjct: 257 VYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISGWWKDTGLGEKLSFARNRLVASFLW 316

Query: 216 -MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLP 274
            MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELE+FTDAV RWDINYALKHLP
Sbjct: 317 SMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLP 376

Query: 275 GYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLE 334
           GYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIK+AWLGLIQAYLVEAKWYHSKYTPKLE
Sbjct: 377 GYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLE 436

Query: 335 EYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSS 393
           EYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSS
Sbjct: 437 EYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSS 495

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|21435708|gb|AAM53946.1|AF514289_1 (+)-limonene synthase 2 [Citrus limon] Back     alignment and taxonomy information
>gi|41017756|sp|Q8L5K3.1|RLC1_CITLI RecName: Full=(R)-limonene synthase 1; AltName: Full=(+)-limonene synthase 1 gi|21435703|gb|AAM53944.1|AF514287_1 (+)-limonene synthase 1 [Citrus limon] gi|152962684|dbj|BAF73932.1| limonene synthase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|209446863|dbj|BAG74774.1| limonene synthase [Poncirus trifoliata] Back     alignment and taxonomy information
>gi|49659435|dbj|BAD27256.1| d-limonene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|394556815|dbj|BAM29049.1| geraniol synthase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|322424201|gb|ADX01382.1| limonene synthase [Murraya paniculata] Back     alignment and taxonomy information
>gi|45934586|gb|AAS79352.1| (-)-a-terpineol synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|75223392|sp|Q6PWU2.1|ATESY_VITVI RecName: Full=(-)-alpha-terpineol synthase gi|45934584|gb|AAS79351.1| (-)-a-terpineol synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|121490210|emb|CAK55186.1| pinene synthase [Quercus ilex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query393
UNIPROTKB|B3TPQ7592 B3TPQ7 "Alpha-terpineol syntha 0.450 0.298 0.558 1.6e-96
UNIPROTKB|J7LH11 546 J7LH11 "(+)-epi-alpha-bisabolo 0.534 0.384 0.461 4.2e-96
UNIPROTKB|J7LQ09 542 J7LQ09 "Trans-alpha-bergamoten 0.526 0.381 0.490 4.8e-95
UNIPROTKB|Q8L5K4600 Q8L5K4 "Gamma-terpinene syntha 0.450 0.295 0.553 8.9e-94
UNIPROTKB|Q5UB07580 TPS4 "Tricyclene synthase TPS4 0.452 0.306 0.511 1.3e-84
UNIPROTKB|Q9SPN0 567 QH1 "R-linalool synthase QH1, 0.529 0.366 0.435 2.2e-82
UNIPROTKB|Q8GUE4 603 GerS "Geraniol synthase, chlor 0.435 0.283 0.488 1.5e-81
TAIR|locus:2829283 600 TPS-CIN ""terpene synthase-lik 0.447 0.293 0.483 3.2e-81
TAIR|locus:2086014 600 TPS-CIN ""terpene synthase-lik 0.447 0.293 0.483 3.2e-81
TAIR|locus:2129101565 TPS03 "terpene synthase 03" [A 0.445 0.309 0.453 5.8e-80
UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
 Score = 509 (184.2 bits), Expect = 1.6e-96, Sum P(2) = 1.6e-96
 Identities = 100/179 (55%), Positives = 129/179 (72%)

Query:   216 MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPG 275
             +G+ FEPQFA CR VLT    LIT IDD+YDVYG+L+ELELFT AV+RWD N A++ LP 
Sbjct:   316 IGVKFEPQFAQCREVLTKINQLITTIDDVYDVYGSLEELELFTKAVDRWDTN-AMEELPE 374

Query:   276 YMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEE 335
             YMK+CFLALYN VNE AY  LK+Q  D++  ++ +W  L +AYLVEA+WY+S YTP L+E
Sbjct:   375 YMKICFLALYNTVNEIAYDTLKEQGVDVIPYLQKSWADLCKAYLVEARWYYSGYTPTLDE 434

Query:   336 YLENGLVSITGPLIITISYLSGTNPIIKKEL-EFLESNPDIVHWSSKIFRLQDDLGTSS 393
             YL N  +SI GP+I+  +Y+S    I K+ L + + S   I+ WSS I RL DDL TS+
Sbjct:   435 YLNNAWISIAGPVILVHAYVSMIQMITKEALLDCVGSYESIMQWSSMILRLADDLATST 493
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0010333 "terpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
GO:0043693 "monoterpene biosynthetic process" evidence=IDA
UNIPROTKB|J7LH11 J7LH11 "(+)-epi-alpha-bisabolol synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LQ09 J7LQ09 "Trans-alpha-bergamotene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q8L5K4 Q8L5K4 "Gamma-terpinene synthase, chloroplastic" [Citrus limon (taxid:2708)] Back     alignment and assigned GO terms
UNIPROTKB|Q5UB07 TPS4 "Tricyclene synthase TPS4, chloroplastic" [Medicago truncatula (taxid:3880)] Back     alignment and assigned GO terms
UNIPROTKB|Q9SPN0 QH1 "R-linalool synthase QH1, chloroplastic" [Artemisia annua (taxid:35608)] Back     alignment and assigned GO terms
UNIPROTKB|Q8GUE4 GerS "Geraniol synthase, chloroplastic" [Cinnamomum tenuipile (taxid:192326)] Back     alignment and assigned GO terms
TAIR|locus:2829283 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086014 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129101 TPS03 "terpene synthase 03" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L5K3RLC1_CITLI4, ., 2, ., 3, ., 2, 00.88270.99740.6468N/Ano
Q6PWU2ATESY_VITVI4, ., 2, ., 3, ., 1, 1, 10.52140.98210.6542yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.976
3rd Layer4.2.3.200.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-173
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 3e-65
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 2e-64
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 8e-60
PLN02279 784 PLN02279, PLN02279, ent-kaur-16-ene synthase 2e-36
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 4e-23
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 5e-23
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  494 bits (1275), Expect = e-173
 Identities = 194/424 (45%), Positives = 265/424 (62%), Gaps = 35/424 (8%)

Query: 1   DETYKRRAEELKGKVKTAIKDVTEPLD---QLELIDNLQRLGLAYHFEPEIRNILRNIHN 57
           ++  +   EELK +V+  ++D   P+D   +L LID LQRLG++YHFE EI+ IL  I+ 
Sbjct: 26  EDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYR 85

Query: 58  HNKDY-NWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFIC---DDFKGILSLH 113
           +  +     +++LY T+L FRLLRQHGY VS +VF  FKD+   F      D KG+LSL+
Sbjct: 86  YWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLY 145

Query: 114 EASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLE 173
           EAS+ S  GE I++EA  FT+KHL+E +   ++   D  ++ + + ALE+PLH  +P LE
Sbjct: 146 EASHLSFPGEDILDEALSFTTKHLEEKL--ESNWIIDPDLSGEIEYALEIPLHASLPRLE 203

Query: 174 ARWFIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDIS------------------- 214
           ARW+I  YE+ +D N  LLELAKL+FN LQA++QEELK +S                   
Sbjct: 204 ARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRL 263

Query: 215 ------GMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINY 268
                   G  FEPQ++  R  L  +IALITVIDD YDVYGTL+ELELFT+AVERWDI+ 
Sbjct: 264 VECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDIS- 322

Query: 269 ALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSK 328
           A+  LP YMK+ F AL N VNE    +LK+    ++  +K AW  L++AYLVEAKW H  
Sbjct: 323 AIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEG 382

Query: 329 YTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDD 388
           Y P  EEY+EN LVSI    ++  S+L   + + ++  E+LES P +V  SS I RL +D
Sbjct: 383 YVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMND 442

Query: 389 LGTS 392
           + T 
Sbjct: 443 IATY 446

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 393
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279 784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 99.97
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 99.95
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 99.73
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.33
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=2.4e-118  Score=940.46  Aligned_cols=386  Identities=50%  Similarity=0.772  Sum_probs=369.6

Q ss_pred             hHHHHHHHHHHHHHHHHhh---cCCccchhHHHHHHHHhCCccCcHHHHHHHHHHHHhcccccc--cccCChhhhhHHHH
Q 043404            3 TYKRRAEELKGKVKTAIKD---VTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYN--WRKENLYATSLEFR   77 (393)
Q Consensus         3 ~~~~~~~~lk~~vr~~l~~---~~d~~~~l~lID~lqRLGI~~hFe~EI~~~L~~i~~~~~~~~--~~~~dL~~~Al~FR   77 (393)
                      .+.+++++||++||+||..   ..|++++|++||+||||||+|||++||+++|++||++| ...  ....||++|||+||
T Consensus        28 ~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~-~~~~~~~~~dl~~~al~FR  106 (542)
T cd00684          28 ELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYW-TERGESNEDDLYTTALGFR  106 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhh-cccccccCCCHHHHHHHHH
Confidence            4678999999999999986   57999999999999999999999999999999999984 321  22579999999999


Q ss_pred             HhhhcCcccccccccccccCCccc---cccchHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhccC-CCCcchhH
Q 043404           78 LLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSN-SKEEDVFV  153 (393)
Q Consensus        78 LLRqhGy~VS~DvF~~F~d~~G~F---~~~d~~glL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~-~~~~~~~L  153 (393)
                      |||||||+||||||++|+|++|+|   +.+||+||||||||||+++|||+|||||++||++||++++.. + .+++  +|
T Consensus       107 lLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLdeA~~ft~~~L~~~~~~-~~~~~~--~l  183 (542)
T cd00684         107 LLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLES-NWIIDP--DL  183 (542)
T ss_pred             HHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHhhc-cCCCCc--hH
Confidence            999999999999999999999999   789999999999999999999999999999999999999821 1 1677  99


Q ss_pred             HHHHHHHcCCCccCCchhhHHhhhHHHhhccccccHHHHHHHhhhhHHHHHHhHHHHHHHHh------------------
Q 043404          154 AEQAKRALELPLHWKVPMLEARWFIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISG------------------  215 (393)
Q Consensus       154 ~~~V~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~lsr------------------  215 (393)
                      +++|++||++|||+++||||||+||++|++++++|++||||||+|||+||++||+||++++|                  
T Consensus       184 ~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~  263 (542)
T cd00684         184 SGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRL  263 (542)
T ss_pred             HHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999                  


Q ss_pred             -------hccccCCCchhHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHH
Q 043404          216 -------MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFV  288 (393)
Q Consensus       216 -------~~~~fEP~~s~~Ri~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~  288 (393)
                             +|++|||++|.+|+++||++++++++||+||+|||+|||+.||+||+|||++ +++.||+|||+||.+|++++
T Consensus       264 ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~-~~~~lPe~mk~~~~al~~~~  342 (542)
T cd00684         264 VECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDIS-AIDQLPEYMKIVFKALLNTV  342 (542)
T ss_pred             HHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhcccc-chhhccHHHHHHHHHHHHHH
Confidence                   8999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccchHHHhh
Q 043404          289 NEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEF  368 (393)
Q Consensus       289 ~ei~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e~~~w  368 (393)
                      +|++.++.+.+|++..+|++++|+++++||++||+|+++||+||++|||+|+.+|+|++++++.++++||+.+|+++++|
T Consensus       343 ~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~  422 (542)
T cd00684         343 NEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEW  422 (542)
T ss_pred             HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHhcCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCChHHHHHHHHHHhhhcccCCCC
Q 043404          369 LESNPDIVHWSSKIFRLQDDLGTSS  393 (393)
Q Consensus       369 ~~~~p~i~~~~~~i~RL~nDi~t~~  393 (393)
                      +..+|+++++++.++||+||++|++
T Consensus       423 ~~~~~~l~~~~~~i~rL~NDi~S~~  447 (542)
T cd00684         423 LESRPKLVRASSTIGRLMNDIATYE  447 (542)
T ss_pred             HhccHHHHHHHHHHHHHhcChhhhH
Confidence            9878999999999999999999985

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 1e-93
2j5c_A569 Rational Conversion Of Substrate And Product Specif 2e-82
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 7e-78
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 1e-75
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 2e-59
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 1e-58
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 1e-58
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 1e-58
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-58
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 2e-58
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 2e-58
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-58
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-58
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 2e-58
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 1e-54
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 1e-49
3p5p_A 764 Crystal Structure Of Taxadiene Synthase From Pacifi 5e-42
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 2e-13
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure 
Iteration: 1

 Score =  340 bits (871), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 191/421 (45%), Positives = 257/421 (61%), Gaps = 34/421 (8%)
Query: 2   ETYKRRAEELKGKVKTAIKD-VTEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXK 60
           E YK +A++L+ +V+  I +   E L  LELIDN+QRLGL Y FE +             
Sbjct: 40  EVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGG 99
Query: 61  DYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFI---CDDFKGILSLHEASY 117
                K +L+AT+L FRLLRQHG+ VSQE FSGFKD    F+    +D K ILSL+EAS+
Sbjct: 100 FDGVTKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASF 159
Query: 118 YSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWF 177
            +LEGE+I++EA  F   HLKE+      KE    +AEQ   ALELPLH +   LEA W 
Sbjct: 160 LALEGENILDEARVFAISHLKELSEEKIGKE----LAEQVNHALELPLHRRTQRLEAVWS 215
Query: 178 IHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDIS----------------------- 214
           I  Y K+ED N +LLELA L++N +Q++YQ +L++ S                       
Sbjct: 216 IEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESF 275
Query: 215 --GMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKH 272
              +G+AFEPQ++ CR  +    + +T+IDDIYDVYGTLDELELFTDAVERWD+N A+  
Sbjct: 276 YWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVN-AIND 334
Query: 273 LPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPK 332
           LP YMK+CFLALYN +NE AY  LK +  ++L  +  AW  L  A+L EAKW ++K TP 
Sbjct: 335 LPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPT 394
Query: 333 LEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTS 392
            ++Y  N   S +GPL +  +Y +    I K+E+E L+   DI+   S IFRL +DL ++
Sbjct: 395 FDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASA 454
Query: 393 S 393
           S
Sbjct: 455 S 455
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-118
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-115
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-114
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 1e-114
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 1e-114
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 1e-113
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-103
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 1e-102
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 5e-98
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 2e-91
3kb9_A 382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 2e-12
1ps1_A 337 Pentalenene synthase; antibiotic biosynthesis, ses 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
 Score =  354 bits (908), Expect = e-118
 Identities = 170/421 (40%), Positives = 253/421 (60%), Gaps = 36/421 (8%)

Query: 1   DETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNK 60
           +E +  RA  +  +VK  +++  + + +LELID+L+RLG++ HFE EI  IL + +  N 
Sbjct: 59  EEKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNN 118

Query: 61  DYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFIC----DDFKGILSLHEAS 116
           + +  + +LY+T+L FRLLRQ+ + VSQEVF  FK+ K         DD +G+L L+EAS
Sbjct: 119 EID--ERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEAS 176

Query: 117 YYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARW 176
           + S +GE  +  A  F +K L++ ++          +    +RALELP HW+V M  AR 
Sbjct: 177 FLSAQGEETLRLARDFATKFLQKRVLVDKDI----NLLSSIERALELPTHWRVQMPNARS 232

Query: 177 FIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDI----------------------- 213
           FI  Y++R D N  +LELAKL+FN +QA +Q+ELK+                        
Sbjct: 233 FIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVEC 292

Query: 214 --SGMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALK 271
                G+    Q  Y R +LT   AL+T IDD++D+YGTL+EL+LFT A++RWDI   +K
Sbjct: 293 YYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIES-MK 351

Query: 272 HLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTP 331
            LP YM++C+LAL+NFVNE AY  L+ + FD    ++  W+GLI++YL+EAKWY+  + P
Sbjct: 352 QLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKP 411

Query: 332 KLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGT 391
            LEEY++N  +SI G  I++  +   T+ I ++  E +    DIV  S  I RL DD+GT
Sbjct: 412 SLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGT 471

Query: 392 S 392
           S
Sbjct: 472 S 472
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 99.97
1ps1_A 337 Pentalenene synthase; antibiotic biosynthesis, ses 99.97
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 99.97
3kb9_A 382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 99.94
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 99.64
1yyq_A 374 Trichodiene synthase; terpenoid cyclase fold, site 94.65
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=1.1e-128  Score=1013.96  Aligned_cols=383  Identities=37%  Similarity=0.642  Sum_probs=368.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhh-cCCccchhHHHHHHHHhCCccCcHHHHHHHHHHHHhcccccccccCChhhhhHHHHHhh
Q 043404            2 ETYKRRAEELKGKVKTAIKD-VTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIHNHNKDYNWRKENLYATSLEFRLLR   80 (393)
Q Consensus         2 ~~~~~~~~~lk~~vr~~l~~-~~d~~~~l~lID~lqRLGI~~hFe~EI~~~L~~i~~~~~~~~~~~~dL~~~Al~FRLLR   80 (393)
                      +.+.+|+++||++||+||.+ ..|++++|+|||+||||||+|||++||+++|++||++ ....  ..||++|||+|||||
T Consensus        46 ~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~-~~~~--~~dl~~~al~FRlLR  122 (554)
T 3g4d_A           46 AETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHN-NNDA--ENDLYTTSIRFRLLR  122 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHS-CCCT--TCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhc-cCCC--CCCHHHHHHHHHHHH
Confidence            45789999999999999975 5799999999999999999999999999999999985 2211  269999999999999


Q ss_pred             hcCcccccccccccccCCccc---cccchHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhccCCCCcchhHHHHH
Q 043404           81 QHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQA  157 (393)
Q Consensus        81 qhGy~VS~DvF~~F~d~~G~F---~~~d~~glL~LYeAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~~~~~~L~~~V  157 (393)
                      ||||+||||||++|+|++|+|   +.+|++||||||||||+++|||+|||+|+.||++||++.+   +.+++  +|+++|
T Consensus       123 ~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~---~~~~~--~l~~~V  197 (554)
T 3g4d_A          123 EHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAV---ASLDH--PLSEEV  197 (554)
T ss_dssp             HTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHS---TTCCT--THHHHH
T ss_pred             hcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHH---hccCc--hHHHHH
Confidence            999999999999999999999   7899999999999999999999999999999999999987   55667  899999


Q ss_pred             HHHcCCCccCCchhhHHhhhHHHhhccccccHHHHHHHhhhhHHHHHHhHHHHHHHHh----------------------
Q 043404          158 KRALELPLHWKVPMLEARWFIHVYEKREDKNHLLLELAKLEFNTLQAIYQEELKDISG----------------------  215 (393)
Q Consensus       158 ~~aL~~P~~~~~~Rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~lsr----------------------  215 (393)
                      +|||++|||+++||+|||+||++|++++++|+.||||||+|||+||++||+||++++|                      
T Consensus       198 ~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~y  277 (554)
T 3g4d_A          198 SHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGY  277 (554)
T ss_dssp             HHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHH
T ss_pred             HHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999                      


Q ss_pred             ---hccccCCCchhHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHH
Q 043404          216 ---MGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFA  292 (393)
Q Consensus       216 ---~~~~fEP~~s~~Ri~~aK~~~l~tviDD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~ei~  292 (393)
                         +|++|||+||.+|++|||+++|+|++||+||+|||+|||++||+||+|||++ ++++||+|||+||.+|+|++|||+
T Consensus       278 fw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~-~~~~LPeymK~~f~al~~~~~e~~  356 (554)
T 3g4d_A          278 FWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIK-CIDEIPEYMKPSYKALLDVYEEMV  356 (554)
T ss_dssp             HHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGG-GGGGSCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCcc-ccccCcHHHHHHHHHHHHHHHHHH
Confidence               8899999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             HHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccchHHHhhccCC
Q 043404          293 YYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESN  372 (393)
Q Consensus       293 ~~~~~~~g~~~~~~lk~~w~~l~~ayl~EAkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t~e~~~w~~~~  372 (393)
                      +++.++||+++++|++++|+++|+||++||||+++||+||+||||+||.+|+|++++++++++|||+.+|+|+++|+.++
T Consensus       357 ~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~  436 (554)
T 3g4d_A          357 QLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASD  436 (554)
T ss_dssp             HHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTC
T ss_pred             HHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhcccc
Confidence            99999988899999999999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             hHHHHHHHHHHhhhcccCCCC
Q 043404          373 PDIVHWSSKIFRLQDDLGTSS  393 (393)
Q Consensus       373 p~i~~~~~~i~RL~nDi~t~~  393 (393)
                      |+|++++++|+||+|||+||+
T Consensus       437 p~i~~~~~~I~RL~NDI~S~k  457 (554)
T 3g4d_A          437 PKIIQASTIICRFMDDVAEHK  457 (554)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcccchhh
Confidence            999999999999999999975
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 393
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 9e-71
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 5e-68
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 7e-68
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 5e-60
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 3e-21
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 2e-17
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  223 bits (569), Expect = 9e-71
 Identities = 94/231 (40%), Positives = 133/231 (57%), Gaps = 27/231 (11%)

Query: 188 NHLLLELAKLEFNTLQAIYQEELKDIS-------------------------GMGIAFEP 222
           N L+ ELAKL FN +QA +Q+ELKD+S                          +G+    
Sbjct: 2   NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPH 61

Query: 223 QFAYCRRVLTISIALITVIDDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFL 282
           Q  Y R++    I L TVIDDIYDVYGTLDELELFTD  +RWD   ++  LP YM++C+ 
Sbjct: 62  QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTE-SITRLPYYMQLCYW 120

Query: 283 ALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLV 342
            ++N++++ AY +LK+  F  L  ++ + + L++AY  EAKWYHS YTP L+EYL    +
Sbjct: 121 GVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKI 180

Query: 343 SITGPLIITISYLSGTNPIIKKE-LEFLESNPDIVHWSSKIFRLQDDLGTS 392
           S+  P II+ +Y +  N       ++ L    DI+  +  I RL DDLGTS
Sbjct: 181 SVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTS 231
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 99.77
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.52
d1kiya_ 354 Trichodiene synthase {Fusarium sporotrichioides [T 87.36
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=1.2e-68  Score=528.11  Aligned_cols=206  Identities=46%  Similarity=0.759  Sum_probs=198.4

Q ss_pred             ccHHHHHHHhhhhHHHHHHhHHHHHHHHh-------------------------hccccCCCchhHHHHHHHHHHHHHhh
Q 043404          187 KNHLLLELAKLEFNTLQAIYQEELKDISG-------------------------MGIAFEPQFAYCRRVLTISIALITVI  241 (393)
Q Consensus       187 ~n~~lLelAkldFn~~Q~~hq~EL~~lsr-------------------------~~~~fEP~~s~~Ri~~aK~~~l~tvi  241 (393)
                      +|+.||||||+|||+||++||+||++|+|                         +|++|||+||.+|++|||+++|++++
T Consensus         1 ~N~~lLelAKlDFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~l~~ii   80 (328)
T d1n1ba2           1 MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVI   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhCCcccCCchHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhh
Confidence            59999999999999999999999999999                         88999999999999999999999999


Q ss_pred             hhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHH
Q 043404          242 DDIYDVYGTLDELELFTDAVERWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKNAWLGLIQAYLVE  321 (393)
Q Consensus       242 DD~yD~ygTleEl~~ft~av~RWD~~~~i~~LPeymki~f~al~~~~~ei~~~~~~~~g~~~~~~lk~~w~~l~~ayl~E  321 (393)
                      ||+||+|||+|||++||+||+|||++ +++.||+|||+||.+|++++||++.++.+.||+++++|+|++|+++++||++|
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~rWd~~-~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~g~~~~~~lk~~w~~l~~ayl~E  159 (328)
T d1n1ba2          81 DDIYDVYGTLDELELFTDTFKRWDTE-SITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHE  159 (328)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHTCSS-GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhcccCCHHHHHHHHHHHHhcCCc-ccccCcchHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCHHHHhhhccccchhhHHHHHHHhcCCCccc-hHHHhhccCChHHHHHHHHHHhhhcccCCCC
Q 043404          322 AKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPII-KKELEFLESNPDIVHWSSKIFRLQDDLGTSS  393 (393)
Q Consensus       322 AkW~~~~y~Pt~eEYl~n~~iS~g~~~l~~~s~~~~g~~~t-~e~~~w~~~~p~i~~~~~~i~RL~nDi~t~~  393 (393)
                      |||+++||+||+||||+||.+|+|++++++++|++||+.++ +++++|+.++|++++++++|+||+|||+||+
T Consensus       160 akW~~~g~vPt~eEYl~~~~vS~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~RL~nDi~~~~  232 (328)
T d1n1ba2         160 AKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSY  232 (328)
T ss_dssp             HHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHhcCCCCCHHHHHhhceehhhHHHHHHHHHHhCCCccchHHHHHHHhccHHHHHHHHHHHHHHhhhhhHH
Confidence            99999999999999999999999999999999999998665 4579999999999999999999999999985
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure