Citrus Sinensis ID: 043413

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
MAVLRTFICVAATAVLIQLSMAANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSSHDVTEVSKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRYFICGAPGHCTVGMKVGIDTLASTSPAPASPSKPPQASPVAPTPQASSKTPPPASPAPETSPSPASPAPETSSPSPEESPKSAPT
ccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccHHHHHccccEEcccEEEEEccccccEEEEcHHHccccccccccccccccccEEEccccccEEEEcccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cHHHHHHHHHHHHHHHHHHHHccEEEEccccccccccccHHHHHcccEEEEccEEEEEEcccccEEEEEHHHHHccccccccEEccccccEEEEcccccEEEEEccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
MAVLRTFICVAATAVLIQLSMAanytvggpnggwdtatdlrtwatsqkflvgdnlifqypsshdvtevskpdydscqtsnkiksytdgntviplsspgkryficgapghctvgMKVGidtlastspapaspskppqaspvaptpqassktpppaspapetspspaspapetsspspeespksapt
MAVLRTFICVAATAVLIQLSMAANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSSHDVTEVSKPDYDSCQtsnkiksytdgntVIPLSSPGKRYFICGAPGHCTVGMKVGIDTLASTSPAPASPSKPPQASPVAPTPQASSKTPPPASPAPETSPSPASPApetsspspeespksapt
MAVLRTFICVAATAVLIQLSMAANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSSHDVTEVSKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRYFICGAPGHCTVGMKVGIDTLastspapaspskppqaspvaptpqassktpppaspapetspspaspapetsspspeespksapt
**VLRTFICVAATAVLIQLSMAANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSSH******************IKSYTDGNTVIPLSSPGKRYFICGAPGHCTVGMKVGIDTL****************************************************************
**VLRTFICVAATAVLIQLSMAANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSSHDVTEVSKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRYFICGAPGHCTVGMKVGI*******************************************************************
MAVLRTFICVAATAVLIQLSMAANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSSHDVTEVSKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRYFICGAPGHCTVGMKVGIDTLAS**************************************************************
MAVLRTFICVAATAVLIQLSMAANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSSHDVTEVSKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRYFICGAPGHCTVGMKVGIDTLAS**************************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAVLRTFICVAATAVLIQLSMAANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSSHDVTEVSKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRYFICGAPGHCTVGMKVGIDTLASTSPAPASPSKPPQASPVAPTPQASSKTPPPASPAPETSPSPASPAPETSSPSPEESPKSAPT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query185 2.2.26 [Sep-21-2011]
Q41001189 Blue copper protein OS=Pi N/A no 0.594 0.582 0.451 2e-20
Q9SK27182 Early nodulin-like protei no no 0.756 0.769 0.366 5e-19
O80517202 Uclacyanin-2 OS=Arabidops no no 0.497 0.455 0.436 1e-17
P80728108 Mavicyanin OS=Cucurbita p N/A no 0.486 0.833 0.462 4e-17
Q9T076 349 Early nodulin-like protei no no 0.762 0.404 0.362 7e-17
Q02917187 Early nodulin-55-2 OS=Gly no no 0.637 0.631 0.354 3e-16
P93329268 Early nodulin-20 OS=Medic N/A no 0.643 0.444 0.325 3e-15
P00302107 Stellacyanin OS=Toxicoden N/A no 0.508 0.878 0.388 2e-14
P0030396 Basic blue protein OS=Cuc N/A no 0.513 0.989 0.41 6e-13
P93328180 Early nodulin-16 OS=Medic N/A no 0.605 0.622 0.290 1e-12
>sp|Q41001|BCP_PEA Blue copper protein OS=Pisum sativum PE=2 SV=1 Back     alignment and function desciption
 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 67/113 (59%), Gaps = 3/113 (2%)

Query: 8   ICVAATAVLIQL-SMAANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPS-SHDV 65
           +C     + + L S+A  YTVG  +G W    D  TWA+ + F VGD+L+F Y + +H V
Sbjct: 9   LCFLLAIINMALPSLATVYTVGDTSG-WVIGGDYSTWASDKTFAVGDSLVFNYGAGAHTV 67

Query: 66  TEVSKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRYFICGAPGHCTVGMKVGI 118
            EV + DY SC + N I + + G T IPL   GK YFICG PGH T GMK+ I
Sbjct: 68  DEVKESDYKSCTSGNSISTDSTGATTIPLKKAGKHYFICGVPGHSTGGMKLSI 120

Pisum sativum (taxid: 3888)
>sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2 Back     alignment and function description
>sp|O80517|BCB2_ARATH Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 PE=1 SV=1 Back     alignment and function description
>sp|P80728|MAVI_CUCPE Mavicyanin OS=Cucurbita pepo PE=1 SV=1 Back     alignment and function description
>sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1 Back     alignment and function description
>sp|Q02917|NO552_SOYBN Early nodulin-55-2 OS=Glycine max GN=ENOD55-2 PE=2 SV=1 Back     alignment and function description
>sp|P93329|NO20_MEDTR Early nodulin-20 OS=Medicago truncatula GN=ENOD20 PE=3 SV=1 Back     alignment and function description
>sp|P00302|STEL_TOXVR Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1 Back     alignment and function description
>sp|P00303|BABL_CUCSA Basic blue protein OS=Cucumis sativus PE=1 SV=1 Back     alignment and function description
>sp|P93328|NO16_MEDTR Early nodulin-16 OS=Medicago truncatula GN=ENOD16 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query185
255549321258 Early nodulin 20 precursor, putative [Ri 0.654 0.468 0.677 1e-46
224093232247 predicted protein [Populus trichocarpa] 0.989 0.740 0.514 2e-45
255638747227 unknown [Glycine max] 0.881 0.718 0.529 5e-44
356549996227 PREDICTED: early nodulin-like protein 1- 0.848 0.691 0.530 5e-44
357453527228 Blue copper protein [Medicago truncatula 0.832 0.675 0.565 6e-44
388500672228 unknown [Medicago truncatula] 0.832 0.675 0.565 9e-44
388519317228 unknown [Medicago truncatula] 0.832 0.675 0.559 2e-43
356543750216 PREDICTED: early nodulin-like protein 1- 0.908 0.777 0.55 1e-42
255646743216 unknown [Glycine max] 0.908 0.777 0.55 1e-42
225447368232 PREDICTED: early nodulin-like protein 2- 0.643 0.512 0.655 3e-42
>gi|255549321|ref|XP_002515714.1| Early nodulin 20 precursor, putative [Ricinus communis] gi|223545151|gb|EEF46661.1| Early nodulin 20 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 82/121 (67%), Positives = 100/121 (82%)

Query: 1   MAVLRTFICVAATAVLIQLSMAANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYP 60
           MA+LR  + +A  A+L +L+MAANYTVGG NGGWDT+T+L+ WA SQ F VGDNLIFQY 
Sbjct: 1   MAILRNVMSLAVIAMLFELAMAANYTVGGSNGGWDTSTNLQAWAASQLFSVGDNLIFQYG 60

Query: 61  SSHDVTEVSKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRYFICGAPGHCTVGMKVGIDT 120
           ++H++ EVS+ DYDSCQTSN I+ ++DG+TVIPLSSPG RYFICG PGHCT GMKV ID 
Sbjct: 61  ANHNLFEVSQADYDSCQTSNAIQGHSDGSTVIPLSSPGTRYFICGTPGHCTQGMKVEIDV 120

Query: 121 L 121
           L
Sbjct: 121 L 121

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224093232|ref|XP_002309845.1| predicted protein [Populus trichocarpa] gi|222852748|gb|EEE90295.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255638747|gb|ACU19678.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356549996|ref|XP_003543376.1| PREDICTED: early nodulin-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357453527|ref|XP_003597041.1| Blue copper protein [Medicago truncatula] gi|355486089|gb|AES67292.1| Blue copper protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|388500672|gb|AFK38402.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388519317|gb|AFK47720.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356543750|ref|XP_003540323.1| PREDICTED: early nodulin-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|255646743|gb|ACU23845.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225447368|ref|XP_002274801.1| PREDICTED: early nodulin-like protein 2-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query185
TAIR|locus:2062525261 UCC1 "uclacyanin 1" [Arabidops 0.605 0.429 0.521 3.3e-31
TAIR|locus:504956334192 AT5G07475 [Arabidopsis thalian 0.583 0.562 0.422 2.3e-23
TAIR|locus:2151069187 AT5G26330 [Arabidopsis thalian 0.610 0.604 0.425 1e-20
TAIR|locus:2081952187 AT3G60270 [Arabidopsis thalian 0.6 0.593 0.410 2.1e-20
TAIR|locus:2086518174 AT3G27200 [Arabidopsis thalian 0.610 0.649 0.365 4.4e-20
TAIR|locus:2009552174 AT1G22480 [Arabidopsis thalian 0.556 0.591 0.442 2.5e-19
TAIR|locus:2206986181 AT1G72230 [Arabidopsis thalian 0.459 0.469 0.482 4e-19
TAIR|locus:2052866200 AT2G31050 [Arabidopsis thalian 0.654 0.605 0.365 6.5e-19
TAIR|locus:2043833206 AT2G26720 [Arabidopsis thalian 0.654 0.587 0.380 1.1e-18
TAIR|locus:2040164182 ENODL14 "early nodulin-like pr 0.637 0.648 0.382 1.7e-18
TAIR|locus:2062525 UCC1 "uclacyanin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 60/115 (52%), Positives = 86/115 (74%)

Query:     8 ICVAATAVLIQLSMAANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS-HDVT 66
             I V AT  LI L++A ++T+GGP+G W     LRTWA  Q F VGDNL+F YP++ HDV 
Sbjct:    10 ISVLATT-LIGLTVATDHTIGGPSG-WTVGASLRTWAAGQTFAVGDNLVFSYPAAFHDVV 67

Query:    67 EVSKPDYDSCQTSNKIKSYTDGNTVIPLSSPGKRYFICGAPGHCTVGMKVGIDTL 121
             EV+KP++DSCQ    + ++ +GN+++PL++PGKRYFICG PGHC+ GMK+ ++ +
Sbjct:    68 EVTKPEFDSCQAVKPLITFANGNSLVPLTTPGKRYFICGMPGHCSQGMKLEVNVV 122
GO:0005507 "copper ion binding" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009055 "electron carrier activity" evidence=IEA
GO:0031225 "anchored to membrane" evidence=TAS
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
TAIR|locus:504956334 AT5G07475 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151069 AT5G26330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081952 AT3G60270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086518 AT3G27200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009552 AT1G22480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206986 AT1G72230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052866 AT2G31050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043833 AT2G26720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040164 ENODL14 "early nodulin-like protein 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
pfam0229884 pfam02298, Cu_bind_like, Plastocyanin-like domain 1e-35
PLN03148167 PLN03148, PLN03148, Blue copper-like protein; Prov 3e-19
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 2e-08
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 4e-08
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 1e-06
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 2e-06
PRK14950 585 PRK14950, PRK14950, DNA polymerase III subunits ga 2e-06
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 3e-06
PRK14950 585 PRK14950, PRK14950, DNA polymerase III subunits ga 4e-06
PRK14951 618 PRK14951, PRK14951, DNA polymerase III subunits ga 4e-06
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 1e-05
PRK14950 585 PRK14950, PRK14950, DNA polymerase III subunits ga 1e-05
PRK07994 647 PRK07994, PRK07994, DNA polymerase III subunits ga 1e-05
PRK14951 618 PRK14951, PRK14951, DNA polymerase III subunits ga 2e-05
PTZ00144 418 PTZ00144, PTZ00144, dihydrolipoamide succinyltrans 2e-05
PRK14951 618 PRK14951, PRK14951, DNA polymerase III subunits ga 3e-05
PRK07994 647 PRK07994, PRK07994, DNA polymerase III subunits ga 3e-05
PRK07994 647 PRK07994, PRK07994, DNA polymerase III subunits ga 3e-05
PRK14951 618 PRK14951, PRK14951, DNA polymerase III subunits ga 4e-05
PRK14954 620 PRK14954, PRK14954, DNA polymerase III subunits ga 5e-05
PRK14971 614 PRK14971, PRK14971, DNA polymerase III subunits ga 5e-05
PRK14951 618 PRK14951, PRK14951, DNA polymerase III subunits ga 6e-05
PRK14948 620 PRK14948, PRK14948, DNA polymerase III subunits ga 6e-05
TIGR00601 378 TIGR00601, rad23, UV excision repair protein Rad23 6e-05
PRK07764 824 PRK07764, PRK07764, DNA polymerase III subunits ga 7e-05
PRK11892 464 PRK11892, PRK11892, pyruvate dehydrogenase subunit 9e-05
PRK14954 620 PRK14954, PRK14954, DNA polymerase III subunits ga 1e-04
PRK14954 620 PRK14954, PRK14954, DNA polymerase III subunits ga 1e-04
PRK03427 333 PRK03427, PRK03427, cell division protein ZipA; Pr 1e-04
PRK14965 576 PRK14965, PRK14965, DNA polymerase III subunits ga 1e-04
PRK14971 614 PRK14971, PRK14971, DNA polymerase III subunits ga 2e-04
PRK14948 620 PRK14948, PRK14948, DNA polymerase III subunits ga 2e-04
TIGR00601 378 TIGR00601, rad23, UV excision repair protein Rad23 2e-04
PRK07764 824 PRK07764, PRK07764, DNA polymerase III subunits ga 2e-04
PRK11892 464 PRK11892, PRK11892, pyruvate dehydrogenase subunit 2e-04
PRK14965 576 PRK14965, PRK14965, DNA polymerase III subunits ga 2e-04
PRK14951 618 PRK14951, PRK14951, DNA polymerase III subunits ga 3e-04
PRK14954 620 PRK14954, PRK14954, DNA polymerase III subunits ga 3e-04
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 4e-04
PRK14948620 PRK14948, PRK14948, DNA polymerase III subunits ga 4e-04
PRK07764 824 PRK07764, PRK07764, DNA polymerase III subunits ga 5e-04
COG5373 931 COG5373, COG5373, Predicted membrane protein [Func 5e-04
TIGR00601 378 TIGR00601, rad23, UV excision repair protein Rad23 6e-04
PRK03427 333 PRK03427, PRK03427, cell division protein ZipA; Pr 6e-04
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 6e-04
PTZ00144 418 PTZ00144, PTZ00144, dihydrolipoamide succinyltrans 7e-04
PRK11855 547 PRK11855, PRK11855, dihydrolipoamide acetyltransfe 8e-04
PRK10856331 PRK10856, PRK10856, cytoskeletal protein RodZ; Pro 8e-04
PRK14951 618 PRK14951, PRK14951, DNA polymerase III subunits ga 0.001
PRK14951 618 PRK14951, PRK14951, DNA polymerase III subunits ga 0.001
PRK14951 618 PRK14951, PRK14951, DNA polymerase III subunits ga 0.001
PRK07764 824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.001
PRK07764 824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.001
PRK07764 824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.001
PRK14965 576 PRK14965, PRK14965, DNA polymerase III subunits ga 0.001
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.001
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.001
PRK13855 376 PRK13855, PRK13855, type IV secretion system prote 0.001
PLN02217670 PLN02217, PLN02217, probable pectinesterase/pectin 0.001
PRK14950 585 PRK14950, PRK14950, DNA polymerase III subunits ga 0.002
PRK14948620 PRK14948, PRK14948, DNA polymerase III subunits ga 0.002
PRK00404141 PRK00404, tatB, sec-independent translocase; Provi 0.002
PRK10547 670 PRK10547, PRK10547, chemotaxis protein CheA; Provi 0.002
pfam04652315 pfam04652, DUF605, Vta1 like 0.002
PRK01297 475 PRK01297, PRK01297, ATP-dependent RNA helicase Rhl 0.002
PRK14948 620 PRK14948, PRK14948, DNA polymerase III subunits ga 0.003
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.003
PRK01297 475 PRK01297, PRK01297, ATP-dependent RNA helicase Rhl 0.003
PRK12323 700 PRK12323, PRK12323, DNA polymerase III subunits ga 0.003
PRK12323 700 PRK12323, PRK12323, DNA polymerase III subunits ga 0.003
PRK06975 656 PRK06975, PRK06975, bifunctional uroporphyrinogen- 0.003
PRK07994 647 PRK07994, PRK07994, DNA polymerase III subunits ga 0.004
PRK07994 647 PRK07994, PRK07994, DNA polymerase III subunits ga 0.004
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 0.004
PRK06302155 PRK06302, PRK06302, acetyl-CoA carboxylase biotin 0.004
PRK07003 830 PRK07003, PRK07003, DNA polymerase III subunits ga 0.004
>gnl|CDD|216965 pfam02298, Cu_bind_like, Plastocyanin-like domain Back     alignment and domain information 
 Score =  119 bits (300), Expect = 1e-35
 Identities = 41/78 (52%), Positives = 52/78 (66%), Gaps = 1/78 (1%)

Query: 38  TDLRTWATSQKFLVGDNLIFQYPS-SHDVTEVSKPDYDSCQTSNKIKSYTDGNTVIPLSS 96
            D   WA+ + F VGD L+F Y    H+V EV+K DY+SC TS  I++YT GN +IPL+ 
Sbjct: 7   ADYTLWASGKTFRVGDTLVFNYDKGFHNVVEVTKADYESCNTSKPIRTYTTGNDIIPLTK 66

Query: 97  PGKRYFICGAPGHCTVGM 114
           PG+ YFICG PGHC  G 
Sbjct: 67  PGQHYFICGVPGHCKGGQ 84

This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues. Length = 84
>gnl|CDD|178693 PLN03148, PLN03148, Blue copper-like protein; Provisional Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23 Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23 Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown] Back     alignment and domain information
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23 Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|172376 PRK13855, PRK13855, type IV secretion system protein VirB10; Provisional Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional Back     alignment and domain information
>gnl|CDD|236712 PRK10547, PRK10547, chemotaxis protein CheA; Provisional Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 185
PLN03148167 Blue copper-like protein; Provisional 100.0
PF0229885 Cu_bind_like: Plastocyanin-like domain; InterPro: 99.97
PRK02710119 plastocyanin; Provisional 99.04
TIGR0265699 cyanin_plasto plastocyanin. Members of this family 98.93
PF0012799 Copper-bind: Copper binding proteins, plastocyanin 98.87
TIGR03102115 halo_cynanin halocyanin domain. Halocyanins are bl 98.85
COG3794128 PetE Plastocyanin [Energy production and conversio 98.64
TIGR02375116 pseudoazurin pseudoazurin. Pseudoazurin, also call 98.52
TIGR0265783 amicyanin amicyanin. Members of this family are am 98.29
TIGR03095148 rusti_cyanin rusticyanin. Rusticyanin is a blue co 97.61
PF13473104 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 97.23
PF06525196 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb 97.05
TIGR03096135 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as de 96.99
COG4454158 Uncharacterized copper-binding protein [Inorganic 96.46
TIGR03094195 sulfo_cyanin sulfocyanin. Members of this family a 96.21
TIGR02695125 azurin azurin. Azurin is a blue copper-binding pro 95.92
KOG3858233 consensus Ephrin, ligand for Eph receptor tyrosine 94.97
PF00116120 COX2: Cytochrome C oxidase subunit II, periplasmic 94.71
PRK02888635 nitrous-oxide reductase; Validated 94.59
TIGR02866201 CoxB cytochrome c oxidase, subunit II. Cytochrome 94.21
PF00812145 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a 93.6
COG1622247 CyoA Heme/copper-type cytochrome/quinol oxidases, 92.12
PRK10378 375 inactive ferrous ion transporter periplasmic prote 91.88
PLN02354 552 copper ion binding / oxidoreductase 91.76
TIGR02376 311 Cu_nitrite_red nitrite reductase, copper-containin 91.51
PLN02604 566 oxidoreductase 91.4
MTH00047194 COX2 cytochrome c oxidase subunit II; Provisional 89.91
PF07732117 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR01 89.75
PLN02191 574 L-ascorbate oxidase 84.38
TIGR01433226 CyoA cytochrome o ubiquinol oxidase subunit II. Th 83.71
MTH00129230 COX2 cytochrome c oxidase subunit II; Provisional 80.86
>PLN03148 Blue copper-like protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5e-42  Score=279.11  Aligned_cols=110  Identities=35%  Similarity=0.678  Sum_probs=102.3

Q ss_pred             HHHHHHhhhcceeEEEEcCCCCCCCCCCCccccccCCeEecCCeeeeeecCC-CcEEEEcCcCcccccCCCCccccCCCC
Q 043413           11 AATAVLIQLSMAANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQYPSS-HDVTEVSKPDYDSCQTSNKIKSYTDGN   89 (185)
Q Consensus        11 ~~~all~~~a~A~~~~VGg~~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~-H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~   89 (185)
                      ++++++...+.|++|+||| +.||+.+.||++|+++++|++||+|+|+|+.+ |||+||++++|++|+.++++..+++|+
T Consensus         9 ~~~~~~~~~~~a~~~~VGd-~~GW~~~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~   87 (167)
T PLN03148          9 FFALFSASATTATDHIVGA-NKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGK   87 (167)
T ss_pred             HHHHHhhhhccceEEEeCC-CCCcCCCCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCC
Confidence            3344556678899999999 89999989999999999999999999999998 999999999999999999999999999


Q ss_pred             cEEecCCCcceeEEcCCCCCCCCCCEEEEEecC
Q 043413           90 TVIPLSSPGKRYFICGAPGHCTVGMKVGIDTLA  122 (185)
Q Consensus        90 ~~v~L~~~G~~YFiC~~~~HC~~GmKl~I~V~~  122 (185)
                      +.|+|+++|+|||||+ .+||++||||.|+|.+
T Consensus        88 d~v~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~  119 (167)
T PLN03148         88 DFIPLNKAKRYYFICG-NGQCFNGMKVTILVHP  119 (167)
T ss_pred             cEEEecCCccEEEEcC-CCccccCCEEEEEEcC
Confidence            9999999999999999 5899999999999964

>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>PRK02710 plastocyanin; Provisional Back     alignment and domain information
>TIGR02656 cyanin_plasto plastocyanin Back     alignment and domain information
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>TIGR03102 halo_cynanin halocyanin domain Back     alignment and domain information
>COG3794 PetE Plastocyanin [Energy production and conversion] Back     alignment and domain information
>TIGR02375 pseudoazurin pseudoazurin Back     alignment and domain information
>TIGR02657 amicyanin amicyanin Back     alignment and domain information
>TIGR03095 rusti_cyanin rusticyanin Back     alignment and domain information
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D Back     alignment and domain information
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus Back     alignment and domain information
>TIGR03096 nitroso_cyanin nitrosocyanin Back     alignment and domain information
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03094 sulfo_cyanin sulfocyanin Back     alignment and domain information
>TIGR02695 azurin azurin Back     alignment and domain information
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>TIGR02866 CoxB cytochrome c oxidase, subunit II Back     alignment and domain information
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO) Back     alignment and domain information
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion] Back     alignment and domain information
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional Back     alignment and domain information
>PLN02354 copper ion binding / oxidoreductase Back     alignment and domain information
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing Back     alignment and domain information
>PLN02604 oxidoreductase Back     alignment and domain information
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional Back     alignment and domain information
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties Back     alignment and domain information
>PLN02191 L-ascorbate oxidase Back     alignment and domain information
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II Back     alignment and domain information
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
1ws7_A109 Crystal Structure Of Mavicyanin From Cucurbita Pepo 1e-17
2cbp_A96 Cucumber Basic Protein, A Blue Copper Protein Lengt 1e-14
1x9r_A116 Umecyanin From Horse Raddish- Crystal Structure Of 9e-12
1f56_A91 Spinach Plantacyanin Length = 91 4e-10
1jer_A138 Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138 4e-08
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo Medullosa (Zucchini) Length = 109 Back     alignment and structure 
Iteration: 1

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
Query: 21  MAANYTVGGPNGGWDTAT--DLRTWATSQKFLVGDNLIFQYPSS-HDVTEVSKPDYDSCQ 77
           MA  + VG  + GW T    D   WA+S KF VGD+L+F Y +  H+V +V +  + SC 
Sbjct: 1   MATVHKVGD-STGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCN 59
Query: 78  TSNKIKSYTDGNTVIPLSSPGKRYFICGAPGHCTVGMKVGI 118
           +S+   SYT G   IPL  PG  YF+CG PGHC +G KV I
Sbjct: 60  SSSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEI 100
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein Length = 96 Back     alignment and structure
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The Oxidised Form Length = 116 Back     alignment and structure
>pdb|1F56|A Chain A, Spinach Plantacyanin Length = 91 Back     alignment and structure
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query185
1ws8_A109 Mavicyanin; oxidized form, phytocyanin, cupredoxin 2e-40
1f56_A91 Plantacyanin; cupredoxin, copper protein, beta bar 6e-39
2cbp_A96 Cucumber basic protein; electron transport, phytoc 1e-38
1x9u_A116 Umecyanin; cupredoxin, phytocyanin, copper binding 4e-37
1jer_A138 Cucumber stellacyanin; electron transport, copper, 2e-29
3nwa_A 703 GB, GB-1, GB1, envelope glycoprotein B; coiled-coi 3e-05
3nwa_A 703 GB, GB-1, GB1, envelope glycoprotein B; coiled-coi 2e-04
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 4e-05
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 9e-05
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 2e-04
3h0g_A 1752 DNA-directed RNA polymerase II subunit RPB1; trans 4e-04
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 5e-04
3h0g_A 1752 DNA-directed RNA polymerase II subunit RPB1; trans 5e-04
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 6e-04
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 6e-05
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 8e-05
1twf_A 1733 B220, DNA-directed RNA polymerase II largest subun 2e-04
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 4e-04
2uv8_A 1887 Fatty acid synthase subunit alpha (FAS2); fatty ac 2e-04
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 3e-04
3v1v_A 433 2-MIB synthase, 2-methylisoborneol synthase; class 3e-04
1pk8_A 422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 6e-04
1pk8_A 422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 6e-04
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Length = 109 Back     alignment and structure
 Score =  131 bits (332), Expect = 2e-40
 Identities = 48/110 (43%), Positives = 62/110 (56%), Gaps = 4/110 (3%)

Query: 21  MAANYTVGGPNGGWDT--ATDLRTWATSQKFLVGDNLIFQY-PSSHDVTEVSKPDYDSCQ 77
           MA  + VG  + GW T    D   WA+S KF VGD+L+F Y    H+V +V +  + SC 
Sbjct: 1   MATVHKVGD-STGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCN 59

Query: 78  TSNKIKSYTDGNTVIPLSSPGKRYFICGAPGHCTVGMKVGIDTLASTSPA 127
           +S+   SYT G   IPL  PG  YF+CG PGHC +G KV I     +S A
Sbjct: 60  SSSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVDPGSSSA 109
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Length = 91 Back     alignment and structure
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Length = 96 Back     alignment and structure
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Length = 116 Back     alignment and structure
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138 Back     alignment and structure
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703 Back     alignment and structure
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422 Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query185
1jer_A138 Cucumber stellacyanin; electron transport, copper, 100.0
1ws8_A109 Mavicyanin; oxidized form, phytocyanin, cupredoxin 100.0
1x9u_A116 Umecyanin; cupredoxin, phytocyanin, copper binding 100.0
2cbp_A96 Cucumber basic protein; electron transport, phytoc 100.0
1f56_A91 Plantacyanin; cupredoxin, copper protein, beta bar 100.0
1qhq_A140 Protein (auracyanin); electron transfer, cupredoxi 99.41
1bxv_A91 Plastocyanin; copper protein, electron transfer; 1 99.37
1iuz_A98 Plastocyanin; electron transport; 1.60A {Ulva pert 99.3
2cal_A154 Rusticyanin; iron respiratory electron transport c 99.23
1plc_A99 Plastocyanin; electron transport; 1.33A {Populus n 99.2
2gim_A106 Plastocyanin; beta sheet, Cu, helix, electron tran 99.19
1kdj_A102 Plastocyanin; electron transfer, photosystem, PAI- 99.19
2plt_A98 Plastocyanin; electron transport; 1.50A {Chlamydom 99.17
1pmy_A123 Pseudoazurin; electron transfer(cuproprotein); 1.5 99.17
1paz_A123 Pseudoazurin precursor; electron transfer(cupropro 99.13
1byp_A99 Protein (plastocyanin); electron transfer, photosy 99.13
1b3i_A97 PETE protein, protein (plastocyanin); electron tra 99.1
2aan_A139 Auracyanin A; cupredoxin fold, electron transport; 99.07
3ef4_A124 Pseudoazurin, blue copper protein; electron transf 99.04
3erx_A123 Pseudoazurin; copper protein, high-resolution, E t 99.03
1pcs_A98 Plastocyanin; electron transport; 2.15A {Synechocy 99.02
3tu6_A127 Pseudoazurin (blue copper protein); cupredoxins, b 99.01
3c75_A132 Amicyanin; copper proteins, electron transfer comp 98.8
3cvb_A105 Plastocyanin; cupredoxin, SELF assembly, copper, e 98.71
4hci_A100 Cupredoxin 1; structural genomics, niaid, national 98.66
2ov0_A105 Amicyanin; beta-sandwich, electron transport; 0.75 98.63
1id2_A106 Amicyanin; beta barrel, type-1 blue copper protein 98.62
3ay2_A167 Lipid modified azurin protein; beta sandwich, bact 98.54
1cuo_A129 Protein (azurin ISO-2); beta barrel, periplasmic, 98.5
2ux6_A122 Pseudoazurin; type-1 copper, metal-binding, redox 98.5
2iaa_C128 Azurin; quinoprotein, tryptophan tryptophylquinone 98.31
1nwp_A128 Azurin; electron transport, cupredoxin, electron t 98.31
2ccw_A129 Azurin II, AZN-2; electron transport (cuproprotein 98.27
1iby_A112 Nitrosocyanin; RED copper, cupredoxin, beta hairpi 97.75
2cua_A135 Protein (CUA); CUA center, electron transport; 1.6 97.68
1iko_P178 Ephrin-B2; greek KEY, glycosylation, signaling pro 97.53
3fsa_A125 Azurin; copper, cupredoxin fold, metal-binding, pr 97.29
3s8f_B168 Cytochrome C oxidase subunit 2; complex IV, respir 96.96
3czu_B182 Ephrin-A1; ATP-binding, kinase, nucleotide-binding 96.79
2dv6_A 447 Nitrite reductase; electron transfer, reduction, d 96.69
2x11_B177 Ephrin-A5; receptor-signaling protein complex, dev 96.43
3sbq_A638 Nitrous-oxide reductase; beta-propeller, cupredoxi 96.3
2vsm_B140 Ephrin-B2; developmental protein, henipavirus, neu 96.12
3d12_B141 Ephrin-B3; beta propeller, protein-receptor comple 95.73
1fwx_A595 Nitrous oxide reductase; beta-propeller domain, cu 95.35
1shx_A138 Ephrin-A5; ephrin signaling, hormone-growth factor 95.14
2wo3_B157 Ephrin-A2; transferase-signaling protein complex, 94.95
1fft_B315 Ubiquinol oxidase; electron transport, cytochrome 92.16
3hb3_B298 Cytochrome C oxidase subunit 2; electron transfer, 90.68
3hei_B132 Ephrin-A1; EPH receptor tyrosine kinase, cell memb 90.32
1cyx_A205 CYOA; electron transport; 2.30A {Escherichia coli} 90.23
1mzy_A 333 Copper-containing nitrite reductase; mutant M182T, 89.77
1oe1_A 336 Dissimilatory copper-containing nitrite reductase; 89.64
2gsm_B262 Cytochrome C oxidase subunit 2; transmembrane prot 88.34
1kbv_A 327 ANIA, major outer membrane protein PAN 1; ANIA[NO2 87.11
1v54_B227 Cytochrome C oxidase polypeptide II; oxidoreductas 86.74
2zoo_A 442 Probable nitrite reductase; electron transfer, ele 84.5
3gdc_A288 Multicopper oxidase; beta sandwich, plasmid, oxido 83.87
2bw4_A 340 Copper-containing nitrite reductase; oxidoreductas 82.84
1mzy_A333 Copper-containing nitrite reductase; mutant M182T, 82.05
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Back     alignment and structure
Probab=100.00  E-value=1.9e-42  Score=272.91  Aligned_cols=104  Identities=32%  Similarity=0.663  Sum_probs=99.1

Q ss_pred             ceeEEEEcCCCCCCCCC---CCccccccCCeEecCCeeeeeecCC-CcEEEE-cCcCcccccCCCCccccCCCCcEEec-
Q 043413           21 MAANYTVGGPNGGWDTA---TDLRTWATSQKFLVGDNLIFQYPSS-HDVTEV-SKPDYDSCQTSNKIKSYTDGNTVIPL-   94 (185)
Q Consensus        21 ~A~~~~VGg~~~GW~~~---~~Y~~Was~~~f~vGDtLvF~y~~~-H~Vv~V-s~~~Yd~C~~s~~~~~~s~G~~~v~L-   94 (185)
                      +|++|+||| +.||+..   .||++|+++++|++||+|+|+|+.+ |+|+|| ++++|+.|+.++++..+++|+++|+| 
T Consensus         2 ~a~~~~VGg-~~GW~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L~   80 (138)
T 1jer_A            2 QSTVHIVGD-NTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERL   80 (138)
T ss_dssp             CCCEEETTG-GGCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEEC
T ss_pred             CceEEEECC-cCcCcCCCCccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEec
Confidence            578999999 8999988   7899999999999999999999988 999999 99999999999999999999999999 


Q ss_pred             CCCcceeEEcCCCCCCCCCCEEEEEecCCCC
Q 043413           95 SSPGKRYFICGAPGHCTVGMKVGIDTLASTS  125 (185)
Q Consensus        95 ~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~  125 (185)
                      +++|++||||++++||++||||+|+|....+
T Consensus        81 ~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~  111 (138)
T 1jer_A           81 DELGMHYFVCTVGTHCSNGQKLSINVVAANA  111 (138)
T ss_dssp             CSSEEEEEECCSTTTGGGTCEEEEEEECCC-
T ss_pred             cCCcCEEEEcCCCCccccCCEEEEEEcCCCC
Confidence            9999999999999999999999999998776
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Back     alignment and structure
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Back     alignment and structure
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Back     alignment and structure
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Back     alignment and structure
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A Back     alignment and structure
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A Back     alignment and structure
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A Back     alignment and structure
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A Back     alignment and structure
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A Back     alignment and structure
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A Back     alignment and structure
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A Back     alignment and structure
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1 Back     alignment and structure
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1 Back     alignment and structure
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A* Back     alignment and structure
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A Back     alignment and structure
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A* Back     alignment and structure
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus} Back     alignment and structure
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0 Back     alignment and structure
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A Back     alignment and structure
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A Back     alignment and structure
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti} Back     alignment and structure
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A Back     alignment and structure
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A Back     alignment and structure
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ... Back     alignment and structure
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1 Back     alignment and structure
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A Back     alignment and structure
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A Back     alignment and structure
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C* Back     alignment and structure
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A Back     alignment and structure
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A Back     alignment and structure
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A Back     alignment and structure
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B* Back     alignment and structure
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5 Back     alignment and structure
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ... Back     alignment and structure
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ... Back     alignment and structure
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B* Back     alignment and structure
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} Back     alignment and structure
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens} Back     alignment and structure
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A Back     alignment and structure
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E Back     alignment and structure
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus} Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B* Back     alignment and structure
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens} Back     alignment and structure
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1 Back     alignment and structure
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B* Back     alignment and structure
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0 Back     alignment and structure
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A Back     alignment and structure
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A Back     alignment and structure
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ... Back     alignment and structure
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B* Back     alignment and structure
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A Back     alignment and structure
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ... Back     alignment and structure
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis} Back     alignment and structure
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP} Back     alignment and structure
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ... Back     alignment and structure
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 185
d2cbpa_96 b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativ 3e-39
d1ws8a_104 b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) 2e-35
d1f56a_91 b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia olera 3e-35
d1jera_110 b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativ 1e-30
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 96 Back     information, alignment and structure

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score =  127 bits (320), Expect = 3e-39
 Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 5/100 (5%)

Query: 23  ANYTVGGPNGGWDTATDLRTWATSQKFLVGDNLIFQY-PSSHDVTEVSKPDYDSCQTSNK 81
           A Y VGG +GGW   T+  +W   ++F  GD L+F Y PS H+V  V++  + +C T   
Sbjct: 1   AVYVVGG-SGGWTFNTE--SWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAG 57

Query: 82  IKSYTDGNTVIPLSSPGKRYFICGAPGHCTVGMKVGIDTL 121
            K YT G   I L   G+ YFIC  PGHC  GMK+ ++ L
Sbjct: 58  AKVYTSGRDQIKL-PKGQSYFICNFPGHCQSGMKIAVNAL 96
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Length = 104 Back     information, alignment and structure
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 91 Back     information, alignment and structure
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 110 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query185
d1ws8a_104 Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663 100.0
d2cbpa_96 Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3 100.0
d1jera_110 Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3 100.0
d1f56a_91 Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 99.97
d1bypa_99 Plastocyanin {White campion (Silene pratensis) [Ta 99.37
d1kdja_102 Plastocyanin {Fern (Adiantum capillus-veneris) [Ta 99.31
d1iuza_98 Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 99.29
d1plca_99 Plastocyanin {Poplar (Populus nigra), variant ital 99.25
d2plta_98 Plastocyanin {Green alga (Chlamydomonas reinhardti 99.24
d2jxma197 Plastocyanin {Photosynthetic prokaryote (Prochloro 99.23
d2cj3a1105 Plastocyanin {Anabaena variabilis [TaxId: 1172]} 99.16
d2q5ba1105 Plastocyanin {Cyanobacterium (Phormidium laminosum 99.13
d1paza_120 Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta 99.09
d1pcsa_98 Plastocyanin {Cyanobacterium (Synechocystis sp.), 99.09
d1adwa_123 Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236 99.09
d1bxua_91 Plastocyanin {Cyanobacterium (Synechocystis sp.), 99.01
d1pmya_123 Pseudoazurin {Methylobacterium extorquens, strain 98.94
d1bqka_124 Pseudoazurin {Achromobacter cycloclastes [TaxId: 2 98.93
d1qhqa_139 Auracyanin {Chloroflexus aurantiacus [TaxId: 1108] 98.85
d2ov0a1105 Amicyanin {Paracoccus denitrificans [TaxId: 266]} 98.75
d1id2a_106 Amicyanin {Paracoccus versutus (Thiobacillus versu 98.68
d1cuoa_129 Azurin {Methylomonas sp. j [TaxId: 32038]} 98.45
d2ccwa1129 Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d 98.17
d1ibya_112 Red copper protein nitrosocyanin {Nitrosomonas eur 97.9
d1jzga_128 Azurin {Pseudomonas aeruginosa [TaxId: 287]} 97.77
d1e30a_153 Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920 97.75
d1nwpa_128 Azurin {Pseudomonas putida [TaxId: 303]} 97.63
d2cuaa_122 Cytochrome c oxidase {Thermus thermophilus, ba3 ty 97.35
d1qnia1131 Nitrous oxide reductase, C-terminal domain {Pseudo 97.15
d1fwxa1132 Nitrous oxide reductase, C-terminal domain {Paraco 97.0
d1kbva1151 Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani 96.53
d1aoza1129 Ascorbate oxidase {Zucchini (Cucurbita pepo var. m 96.46
d1oe2a1159 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 95.94
d1ikop_141 Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 95.68
d1shxa1138 Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]} 95.37
d1mzya1153 Nitrite reductase, NIR {Rhodobacter sphaeroides [T 95.1
d2bw4a1157 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 94.61
d2q9oa1162 Laccase {Melanocarpus albomyces [TaxId: 204285]} 93.68
d1gyca1130 Laccase {Trametes versicolor, laccase 2 [TaxId: 53 93.4
d1hfua1131 Laccase {Inky cap fungus (Coprinus cinereus) [TaxI 92.23
d1cyxa_158 Quinol oxidase (CyoA) {Escherichia coli [TaxId: 56 91.7
d1kv7a1140 multi-copper oxidase CueO {Escherichia coli [TaxId 91.52
d1kcwa2146 Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} 89.85
d2j5wa2145 Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} 88.79
d1v10a1136 Laccase {Rigidoporus lignosus [TaxId: 219653]} 87.95
d1sddb2139 Coagulation factor V {Cow (Bos taurus) [TaxId: 991 86.73
d3ehbb1145 Cytochrome c oxidase {Paracoccus denitrificans [Ta 84.74
d3dtub1152 Cytochrome c oxidase {Rhodobacter sphaeroides [Tax 83.68
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 83.31
d1v54b1137 Cytochrome c oxidase {Cow (Bos taurus) [TaxId: 991 81.06
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Back     information, alignment and structure
class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

Probab=100.00  E-value=3e-38  Score=235.90  Aligned_cols=101  Identities=46%  Similarity=0.898  Sum_probs=96.1

Q ss_pred             ceeEEEEcCCCCCCCC--CCCccccccCCeEecCCeeeeeecCC-CcEEEEcCcCcccccCCCCccccCCCCcEEecCCC
Q 043413           21 MAANYTVGGPNGGWDT--ATDLRTWATSQKFLVGDNLIFQYPSS-HDVTEVSKPDYDSCQTSNKIKSYTDGNTVIPLSSP   97 (185)
Q Consensus        21 ~A~~~~VGg~~~GW~~--~~~Y~~Was~~~f~vGDtLvF~y~~~-H~Vv~Vs~~~Yd~C~~s~~~~~~s~G~~~v~L~~~   97 (185)
                      .|++|+||| +.||+.  +.+|++|+++++|++||+|+|+|+.+ |+|+||++++|+.|+..+++..+++|++.|+|+++
T Consensus         1 ~at~~~VGg-~~gW~~~~~~~Y~~Wa~~~~f~vGD~l~F~y~~~~h~V~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~   79 (104)
T d1ws8a_           1 MATVHKVGD-STGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRP   79 (104)
T ss_dssp             CCCEEETTG-GGCSCSSSCCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSS
T ss_pred             CCcEEEeCC-cCccCcCCCcCHHHHhhCCcCCCCCEEEEEECCCCceEEEECHHHhcCCcCCCccccccCCCeEEEEecC
Confidence            478999999 899985  56899999999999999999999999 99999999999999999999999999999999999


Q ss_pred             cceeEEcCCCCCCCCCCEEEEEecC
Q 043413           98 GKRYFICGAPGHCTVGMKVGIDTLA  122 (185)
Q Consensus        98 G~~YFiC~~~~HC~~GmKl~I~V~~  122 (185)
                      |++||||++++||++||||.|+|++
T Consensus        80 g~~yF~C~~~~HC~~Gmkl~I~V~P  104 (104)
T d1ws8a_          80 GTFYFLCGIPGHCQLGQKVEIKVDP  104 (104)
T ss_dssp             EEEEEECCSTTTTTTTCEEEEEECC
T ss_pred             ccEEEECCCcchhhCCCEEEEEECC
Confidence            9999999999999999999999974
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Back     information, alignment and structure
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Back     information, alignment and structure
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]} Back     information, alignment and structure
>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]} Back     information, alignment and structure
>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]} Back     information, alignment and structure
>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]} Back     information, alignment and structure
>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]} Back     information, alignment and structure
>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]} Back     information, alignment and structure
>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]} Back     information, alignment and structure
>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]} Back     information, alignment and structure
>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]} Back     information, alignment and structure
>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]} Back     information, alignment and structure
>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]} Back     information, alignment and structure
>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]} Back     information, alignment and structure
>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]} Back     information, alignment and structure
>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]} Back     information, alignment and structure
>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]} Back     information, alignment and structure
>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]} Back     information, alignment and structure
>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]} Back     information, alignment and structure
>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d1ikop_ b.6.1.5 (P:) Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId: 204285]} Back     information, alignment and structure
>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]} Back     information, alignment and structure
>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]} Back     information, alignment and structure
>d1cyxa_ b.6.1.2 (A:) Quinol oxidase (CyoA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kv7a1 b.6.1.3 (A:31-170) multi-copper oxidase CueO {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j5wa2 b.6.1.3 (A:555-699) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v10a1 b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [TaxId: 219653]} Back     information, alignment and structure
>d1sddb2 b.6.1.3 (B:1724-1862) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3ehbb1 b.6.1.2 (B:108-252) Cytochrome c oxidase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d3dtub1 b.6.1.2 (B:130-281) Cytochrome c oxidase {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1v54b1 b.6.1.2 (B:91-227) Cytochrome c oxidase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure