Citrus Sinensis ID: 043414

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MKAAIVSMLVLVALMQMIVTPGEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNIPISKTTNCAK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHccccccccHHHHHHcccccHHHHHccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHcccHHHHccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHcHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
MKAAIVSMLVLVALMQMIVtpgeaitcgqvdaSLASCIPyliaggnpdaaccdgvknlksitpatadGRAACECVKAAAArypnikedaasslpqkcgvqmnipiskttncak
Flexible Loop (DISEMBL)
MKAAIVSMLVLVALMQMIVTPGEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNIKedaasslpqkcgvqmnipiskttncak
Low Complexity Region (SEG)
MKAAIVSMLVLVALMQMIVTPGEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRaacecvkaaaaRYPNIKEDAASSLPQKCGVQMNIPISKTTNCAK
Disordered region (IsUnstruct)
***AIVSMLVLVALMQMIVTPGEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNI****************************
Disordered Region (DISOPRED)
***AIVSMLVLVALMQMIVTPGEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNIPISKTTNCA*
Disordered Region (DISEMBL)
MKAAIVSMLVLVALMQMIVTPGEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNIPISKTTNCAK
Disordered Region (DISPRO)
*KAAIVSMLVLVALMQMIVTPGEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNIPISKT*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKAAIVSMLVLVALMQMIVTPGEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNIPISKTTNCAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	113	2.2.26 [Sep-21-2011]
P10973	92	Non-specific lipid-transf	N/A	no	0.769	0.945	0.693	3e-30
P10974	92	Non-specific lipid-transf	N/A	no	0.787	0.967	0.6	2e-25
Q2V3C1	119	Non-specific lipid-transf	yes	no	0.920	0.873	0.461	2e-22
P86137	92	Non-specific lipid-transf	N/A	no	0.787	0.967	0.549	6e-22
P85206	92	Non-specific lipid-transf	N/A	no	0.778	0.956	0.544	1e-21
P82007	116	Non-specific lipid-transf	N/A	no	0.929	0.905	0.452	6e-20
Q43017	117	Non-specific lipid-transf	N/A	no	0.982	0.948	0.419	4e-19
Q9M5X8	117	Non-specific lipid-transf	N/A	no	0.973	0.940	0.405	6e-18
Q9M5X7	115	Non-specific lipid-transf	N/A	no	0.991	0.973	0.419	1e-17
P81402	91	Non-specific lipid-transf	N/A	no	0.778	0.967	0.465	8e-17

>sp|P10973|NLTPA_RICCO Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 76/88 (86%), Gaps = 1/88 (1%)

Query: 25  ITCGQVDASLASCIPYLIAG-GNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYP 83
           + CGQV++SLASCIP+L  G  +P A+CC GV+NLK++ P +AD RAACEC+KAAAAR+P
Sbjct: 1   VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFP 60

Query: 84  NIKEDAASSLPQKCGVQMNIPISKTTNC 111
            IK+DAASSLP+KCGV +NIPISKTTNC
Sbjct: 61  TIKQDAASSLPKKCGVDINIPISKTTNC 88

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
Ricinus communis (taxid: 3988)

>sp|P10974|NLTPB_RICCO Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 65/90 (72%), Gaps = 1/90 (1%)

Query: 25  ITCGQVDASLASCIPYLIA-GGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYP 83
           + CGQV+ +L+SC+P+L      P   CC GV  LK + P   D R ACECVK AAARYP
Sbjct: 1   VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYP 60

Query: 84  NIKEDAASSLPQKCGVQMNIPISKTTNCAK 113
           NI+EDAASSLP KCGV +N+PISKTTNC +
Sbjct: 61  NIREDAASSLPYKCGVVINVPISKTTNCHE 90

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Ricinus communis (taxid: 3988)

>sp|Q2V3C1|NLTPB_ARATH Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 67/104 (64%)

Query: 8   MLVLVALMQMIVTPGEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATAD 67
           +L+++ ++  I   GEAI C QV+  LA C+PYL AGGNP   CC+G+ +LK+  P  AD
Sbjct: 12  LLLVITILLGIAYHGEAIACPQVNMYLAQCLPYLKAGGNPSPMCCNGLNSLKAAAPEKAD 71

Query: 68  GRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNIPISKTTNC 111
            + AC C+K+ A   P I +D A  LP KCGV + +P SKT +C
Sbjct: 72  RQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDC 115

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|P86137|NLTP1_ACTDE Non-specific lipid-transfer protein 1 OS=Actinidia deliciosa PE=1 SV=2

 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 50/91 (54%), Positives = 68/91 (74%), Gaps = 2/91 (2%)

Query: 24  AITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATA-DGRAACECVKAAAARY 82
           A++CGQVD +L  C+ YL  GG P   CC GV++LKS+T     D +AAC C+K AAARY
Sbjct: 1   AVSCGQVDTALTPCLTYLTKGGTPSTQCCSGVRSLKSMTGTKVPDRQAACNCLKQAAARY 60

Query: 83  PNIKEDAASSLPQKCGVQMNIPISKTTNCAK 113
             IK DAA++L QKCGVQ+++PIS++T+C+K
Sbjct: 61  QGIK-DAAAALSQKCGVQLSVPISRSTDCSK 90

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Actinidia deliciosa (taxid: 3627)

>sp|P85206|NLTP2_ACTDE Non-specific lipid-transfer protein 2 OS=Actinidia deliciosa PE=1 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 67/90 (74%), Gaps = 2/90 (2%)

Query: 25  ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATA-DGRAACECVKAAAARYP 83
           ++CGQVD +L  C+ YL  GG P   CC GV++LKS+T     D +AAC C+K AAARY 
Sbjct: 2   VSCGQVDTALTPCLTYLTKGGTPSTQCCSGVRSLKSMTGTKVPDRQAACNCLKQAAARYQ 61

Query: 84  NIKEDAASSLPQKCGVQMNIPISKTTNCAK 113
            IK DAA++L QKCGVQ+++PIS++T+C+K
Sbjct: 62  GIK-DAAAALSQKCGVQLSVPISRSTDCSK 90

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Actinidia deliciosa (taxid: 3627)

>sp|P82007|NLTP1_HELAN Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 65/106 (61%), Gaps = 1/106 (0%)

Query: 6   VSMLVLVALMQMIVTPGEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPAT 65
           V++L ++ + Q++V P  AITC  V  +L  C+PYL +GG P  ACC G K L   T   
Sbjct: 8   VAILAMIVMAQLMVHPSVAITCNDVTGNLTPCLPYLRSGGKPTPACCAGAKKLLGATRTQ 67

Query: 66  ADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNIPISKTTNC 111
           AD R AC+C K AA +   ++ D ASSLP KCG+  +IPI+   NC
Sbjct: 68  ADRRTACKCAKTAAPQL-KVRPDMASSLPGKCGISTSIPINPNVNC 112

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues. Permeabilizes the membrane of fungal spores, inhibits germination of the spores of the fungus F.solani at a concentration of 40 ug/ml. Inhibits the growth of F.solani with an IC(50) of 6.5 ug/ml, weakly inhibits the growth of the fungus A.alternata. Binds oleoyl-CoA.

Helianthus annuus (taxid: 4232)

>sp|Q43017|NLTP1_PRUDU Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 73/112 (65%), Gaps = 1/112 (0%)

Query: 3   AAIVSMLVLVALMQMIVTP-GEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSI 61
           +A+  + ++VAL  ++  P  +AITCGQV ++LA CIPY+  GG    ACC+G++N+ ++
Sbjct: 4   SAMTKLALVVALCMVVSVPIAQAITCGQVSSNLAPCIPYVRGGGAVPPACCNGIRNVNNL 63

Query: 62  TPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNIPISKTTNCAK 113
              T D +AAC C+K  +A  P +  + A++LP KCGV +   IS +TNCA 
Sbjct: 64  ARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCAN 115

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Prunus dulcis (taxid: 3755)

>sp|Q9M5X8|NLTP_PRUAV Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 72/111 (64%), Gaps = 1/111 (0%)

Query: 3   AAIVSMLVLVALMQMIVTP-GEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSI 61
           +A+  + ++VAL  ++  P  +A+TCGQV ++LA CI Y+  GG    ACC+G++N+ ++
Sbjct: 4   SAMTKLALVVALCMVVSVPIAQALTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNL 63

Query: 62  TPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNIPISKTTNCA 112
              TAD + AC C+K  +A  P +  + A++LP KCGV +   IS +TNCA
Sbjct: 64  AKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCA 114

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Prunus avium (taxid: 42229)

>sp|Q9M5X7|NLTP_MALDO Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 67/112 (59%)

Query: 1   MKAAIVSMLVLVALMQMIVTPGEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKS 60
           M ++ V+ L LV  + M V+   AITCGQV +SLA CI Y+ +GG    ACC+G++ +  
Sbjct: 1   MASSAVTKLALVVALCMAVSVAHAITCGQVTSSLAPCIGYVRSGGAVPPACCNGIRTING 60

Query: 61  ITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNIPISKTTNCA 112
           +   TAD + AC C+K  A     +  + A+ LP KCGV +   IS +TNCA
Sbjct: 61  LARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCA 112

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Malus domestica (taxid: 3750)

>sp|P81402|NLTP1_PRUPE Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 59/88 (67%)

Query: 25  ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPN 84
           ITCGQV ++LA CIPY+  GG    ACC+G++N+ ++   T D +AAC C+K  +A  P 
Sbjct: 1   ITCGQVSSALAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPG 60

Query: 85  IKEDAASSLPQKCGVQMNIPISKTTNCA 112
           +  + A++LP KCGV +   IS +TNCA
Sbjct: 61  VNPNNAAALPGKCGVHIPYKISASTNCA 88

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Prunus persica (taxid: 3760)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
255541064	115	Nonspecific lipid-transfer protein A, pu	0.973	0.956	0.660	2e-36
255541060	113	Nonspecific lipid-transfer protein A, pu	0.973	0.973	0.651	4e-36
359488913	115	PREDICTED: non-specific lipid-transfer p	0.991	0.973	0.517	8e-30
147833360	113	hypothetical protein VITISV_020613 [Viti	0.991	0.991	0.517	9e-30
225446753	116	PREDICTED: non-specific lipid-transfer p	0.805	0.784	0.692	1e-29
255572371	115	Nonspecific lipid-transfer protein B, pu	1.0	0.982	0.552	3e-29
128378	92	RecName: Full=Non-specific lipid-transfe	0.769	0.945	0.693	1e-28
255572373	115	Nonspecific lipid-transfer protein B, pu	1.0	0.982	0.556	4e-28
255541058	107	Nonspecific lipid-transfer protein A, pu	0.902	0.953	0.644	9e-26
128380	92	RecName: Full=Non-specific lipid-transfe	0.787	0.967	0.6	7e-24

>gi|255541064|ref|XP_002511596.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis] gi|223548776|gb|EEF50265.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis]

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/112 (66%), Positives = 97/112 (86%), Gaps = 2/112 (1%)

Query: 1   MKAAIVSMLVLVALMQMIVTPGEAITCGQVDASLASCIPYLIAG-GNPDAACCDGVKNLK 59
           MK A++SMLV++A++Q ++ PGEA+ CGQV++SLASCIP+L  G  +P A+CC GV+NLK
Sbjct: 1   MKGAVISMLVVLAIVQFVM-PGEAVDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLK 59

Query: 60  SITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNIPISKTTNC 111
           ++ P TAD RAAC+C+KAAAAR+P IK+DAASSLP+KCGV +NIPISKTTNC
Sbjct: 60  TLAPTTADRRAACDCIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNC 111

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541060|ref|XP_002511594.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis] gi|223548774|gb|EEF50263.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/112 (65%), Positives = 96/112 (85%), Gaps = 2/112 (1%)

Query: 1   MKAAIVSMLVLVALMQMIVTPGEAITCGQVDASLASCIPYLIAG-GNPDAACCDGVKNLK 59
           MK  ++SMLV++A++Q ++ PGEA+ CGQV++SLASCIP+L  G  +P A+CC GV+NLK
Sbjct: 1   MKGVVISMLVVLAIVQFVM-PGEAVDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLK 59

Query: 60  SITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNIPISKTTNC 111
           ++ P +AD RAACEC+KAAAAR+P IK+DAASSLP+KCGV +NIPISKTTNC
Sbjct: 60  TLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNC 111

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488913|ref|XP_002283359.2| PREDICTED: non-specific lipid-transfer protein AP10-like [Vitis vinifera]

 Score =  134 bits (336), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 58/112 (51%), Positives = 85/112 (75%)

Query: 1   MKAAIVSMLVLVALMQMIVTPGEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKS 60
           MK  ++++LV +A++  +  P  AITC  V+ +LA C+ YL  GG P +ACCDGV+ LKS
Sbjct: 1   MKGVVIALLVALAMVHFMAEPARAITCSDVNKALAPCVSYLTGGGAPTSACCDGVRTLKS 60

Query: 61  ITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNIPISKTTNCA 112
           ++P T+D + AC+C K AA+R PNI+EDAA++LP KCGVQ +IPIS++T+C+
Sbjct: 61  LSPTTSDRQTACQCAKDAASRNPNIREDAAAALPNKCGVQTDIPISRSTDCS 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833360|emb|CAN72931.1| hypothetical protein VITISV_020613 [Vitis vinifera]

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 58/112 (51%), Positives = 85/112 (75%)

Query: 1   MKAAIVSMLVLVALMQMIVTPGEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKS 60
           MK  ++++LV +A++  +  P  AITC  V+ +LA C+ YL  GG P +ACCDGV+ LKS
Sbjct: 1   MKGVVIALLVALAMVHFMAEPARAITCSDVNKALAPCVSYLTGGGAPTSACCDGVRTLKS 60

Query: 61  ITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNIPISKTTNCA 112
           ++P T+D + AC+C K AA+R PNI+EDAA++LP KCGVQ +IPIS++T+C+
Sbjct: 61  LSPTTSDRQTACQCAKDAASRNPNIREDAAAALPNKCGVQTDIPISRSTDCS 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446753|ref|XP_002282792.1| PREDICTED: non-specific lipid-transfer protein A-like [Vitis vinifera]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/91 (69%), Positives = 74/91 (81%)

Query: 21  PGEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAA 80
           PG A+TCGQV+ SLA C+PYL  GGNP A CC+GV+NLK +TP T D R AC CVKAAA+
Sbjct: 22  PGYAVTCGQVETSLAPCMPYLTGGGNPAAPCCNGVQNLKLLTPTTTDRRDACRCVKAAAS 81

Query: 81  RYPNIKEDAASSLPQKCGVQMNIPISKTTNC 111
           ++ NIKEDAAS+LP KCGVQ+ IPIS TTNC
Sbjct: 82  KFQNIKEDAASALPTKCGVQIGIPISMTTNC 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572371|ref|XP_002527124.1| Nonspecific lipid-transfer protein B, putative [Ricinus communis] gi|223533547|gb|EEF35287.1| Nonspecific lipid-transfer protein B, putative [Ricinus communis]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/114 (55%), Positives = 80/114 (70%), Gaps = 1/114 (0%)

Query: 1   MKAAIVSMLVLVALMQMIVTPGEAITCGQVDASLASCIPYLIA-GGNPDAACCDGVKNLK 59
           MK A++S+L    ++Q +   GEA+ CGQV+ +L+SC+P+L      P   CC GV  LK
Sbjct: 2   MKGAVISVLAAAIILQAMAMQGEAVNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELK 61

Query: 60  SITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNIPISKTTNCAK 113
            + P   D R ACECVK AAARYPNI+EDAASSLP KCGV +N+PISKTTNC +
Sbjct: 62  RLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHE 115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|128378|sp|P10973.1|NLTPA_RICCO RecName: Full=Non-specific lipid-transfer protein A; Short=NS-LTP A; AltName: Full=Phospholipid transfer protein; Short=PLTP gi|224909|prf||1204170A protein,nonspecific lipid transfer

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 76/88 (86%), Gaps = 1/88 (1%)

Query: 25  ITCGQVDASLASCIPYLIAG-GNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYP 83
           + CGQV++SLASCIP+L  G  +P A+CC GV+NLK++ P +AD RAACEC+KAAAAR+P
Sbjct: 1   VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFP 60

Query: 84  NIKEDAASSLPQKCGVQMNIPISKTTNC 111
            IK+DAASSLP+KCGV +NIPISKTTNC
Sbjct: 61  TIKQDAASSLPKKCGVDINIPISKTTNC 88

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572373|ref|XP_002527125.1| Nonspecific lipid-transfer protein B, putative [Ricinus communis] gi|223533548|gb|EEF35288.1| Nonspecific lipid-transfer protein B, putative [Ricinus communis]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 83/115 (72%), Gaps = 2/115 (1%)

Query: 1   MKAAIVSML-VLVALMQMIVTPGEAITCGQVDASLASCIPYLIA-GGNPDAACCDGVKNL 58
           MK  I+S+L V V ++Q++   G AI C QV+  L +C+PYLI    +P  ACC GV+NL
Sbjct: 1   MKGIIISVLGVTVIMVQLMAMQGVAIDCAQVNLLLGTCMPYLIGFDSSPSLACCAGVRNL 60

Query: 59  KSITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNIPISKTTNCAK 113
           K + P TAD R AC+CVKAAAAR+PNI++DAAS+LP KCGV  NIP+S TT C +
Sbjct: 61  KRLAPTTADRRVACDCVKAAAARHPNIRDDAASTLPNKCGVDFNIPVSNTTKCQE 115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541058|ref|XP_002511593.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis] gi|223548773|gb|EEF50262.1| Nonspecific lipid-transfer protein A, putative [Ricinus communis]

 Score =  120 bits (301), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 69/107 (64%), Positives = 81/107 (75%), Gaps = 5/107 (4%)

Query: 6   VSMLVLVALMQMIVTPGEAITCGQVDASLASCIPYLI-AGGNPDAACCDGVKNLKSITPA 64
           +S+LV  AL+Q +  PGEAI CGQV++SLA+CIPYL  A   P A+CC GVKNLK++ P 
Sbjct: 1   MSVLVTFALLQFMGMPGEAIDCGQVNSSLAACIPYLTGADAAPSASCCAGVKNLKALAPT 60

Query: 65  TADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNIPISKTTNC 111
           TA         KAAAARYP IKEDAASSLP+ CGV+MNIPISKTTNC
Sbjct: 61  TAACACI----KAAAARYPTIKEDAASSLPKNCGVEMNIPISKTTNC 103

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|128380|sp|P10974.1|NLTPB_RICCO RecName: Full=Non-specific lipid-transfer protein B; Short=NS-LTP B; AltName: Full=Phospholipid transfer protein; Short=PLTP

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 65/90 (72%), Gaps = 1/90 (1%)

Query: 25  ITCGQVDASLASCIPYLIA-GGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYP 83
           + CGQV+ +L+SC+P+L      P   CC GV  LK + P   D R ACECVK AAARYP
Sbjct: 1   VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYP 60

Query: 84  NIKEDAASSLPQKCGVQMNIPISKTTNCAK 113
           NI+EDAASSLP KCGV +N+PISKTTNC +
Sbjct: 61  NIREDAASSLPYKCGVVINVPISKTTNCHE 90

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
TAIR|locus:504955533	119	AT4G33355 [Arabidopsis thalian	0.920	0.873	0.413	1.9e-19
TAIR|locus:2168474	115	LTP3 "lipid transfer protein 3	0.982	0.965	0.360	3.4e-13
TAIR|locus:2064212	118	LP1 "lipid transfer protein 1"	0.946	0.906	0.324	1.5e-12
UNIPROTKB|P83434	91	P83434 "Non-specific lipid-tra	0.769	0.956	0.402	1.9e-12
TAIR|locus:2168459	112	LTP4 "lipid transfer protein 4	0.964	0.973	0.357	3.9e-12
UNIPROTKB|Q84N29	122	LTP3 "Probable non-specific li	0.955	0.885	0.306	1e-11
TAIR|locus:2081840	119	LTP12 "lipid transfer protein	0.893	0.848	0.333	2.8e-11
TAIR|locus:2062116	116	AT2G18370 [Arabidopsis thalian	0.938	0.913	0.288	2.5e-10
TAIR|locus:2064107	118	LTP2 "lipid transfer protein 2	0.964	0.923	0.292	2.5e-10
TAIR|locus:2081855	118	LTP5 "lipid transfer protein 5	0.929	0.889	0.357	3.2e-10

TAIR|locus:504955533 AT4G33355 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 43/104 (41%), Positives = 60/104 (57%)

Query:     8 MLVLVALMQMIVTPGEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATAD 67
             +L+++ ++  I   GEAI C QV+  LA C+PYL AGGNP   CC+G+ +LK+  P  AD
Sbjct:    12 LLLVITILLGIAYHGEAIACPQVNMYLAQCLPYLKAGGNPSPMCCNGLNSLKAAAPEKAD 71

Query:    68 GRXXXXXXXXXXXRYPNIKEDAASSLPQKCGVQMNIPISKTTNC 111
              +             P I +D A  LP KCGV + +P SKT +C
Sbjct:    72 RQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDC 115

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

TAIR|locus:2168474 LTP3 "lipid transfer protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 40/111 (36%), Positives = 52/111 (46%)

Query:     1 MKAAIVSMLVLVALMQMIVTPGEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKS 60
             M  A+     LV  + ++ +   AI+CG V  SLA C  YL  GG    +CC GVK L S
Sbjct:     1 MAFALRFFTCLVLTVCIVASVDAAISCGTVAGSLAPCATYLSKGGLVPPSCCAGVKTLNS 60

Query:    61 ITPATADGRXXXXXXXXXXXRYPNIKEDAASSLPQKCGVQMNIPISKTTNC 111
             +   T D +               +    AS LP KCGV +  PIS +TNC
Sbjct:    61 MAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNC 111

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005618 "cell wall" evidence=TAS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0048046 "apoplast" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2064212 LP1 "lipid transfer protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 35/108 (32%), Positives = 57/108 (52%)

Query:     5 IVSMLVLVALMQMIVTPGEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPA 64
             +  +L+   ++   +T   A++CG V+++LA+CI Y++ GG    ACC GVKNL SI   
Sbjct:     7 LACLLLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKT 66

Query:    65 TADGRXXXXXXXXXXXRYPN-IKEDAASSLPQKCGVQMNIPISKTTNC 111
             T D +              + +    A+ +P+ CGV +   IS +TNC
Sbjct:    67 TPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNC 114

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

UNIPROTKB|P83434 P83434 "Non-specific lipid-transfer protein 1" [Vigna radiata var. radiata (taxid:3916)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 35/87 (40%), Positives = 46/87 (52%)

Query:    25 ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRYPN 84
             +TCGQV  +LA CI +L  GG    +CC GVKN+ + +  TAD R               
Sbjct:     1 MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRG 60

Query:    85 IKEDAASSLPQKCGVQMNIPISKTTNC 111
             I  + A +LP KCGV +   IS +TNC
Sbjct:    61 INPNNAEALPGKCGVNIPYKISTSTNC 87

GO:0005215 "transporter activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0006869 "lipid transport" evidence=IDA

GO:0008289 "lipid binding" evidence=IDA

GO:0050830 "defense response to Gram-positive bacterium" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IDA

TAIR|locus:2168459 LTP4 "lipid transfer protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 40/112 (35%), Positives = 53/112 (47%)

Query:     1 MKAAIVSMLVLVALMQMIVTPGEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKS 60
             M  A+      V  + ++ +   AITCG V +SL+ C+ YL  GG     CC GVK L  
Sbjct:     1 MAFALRFFTCFVLTVFIVASVDAAITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNG 60

Query:    61 ITPATADGRXXXXXXXXXXXRYPNIKEDAASSLPQKCGVQMNIPISKTTNCA 112
             +   T D R           +   +    AS LP KCGV +  PIS +TNCA
Sbjct:    61 MAQTTPD-RQQACRCLQSAAK--GVNPSLASGLPGKCGVSIPYPISTSTNCA 109

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

UNIPROTKB|Q84N29 LTP3 "Probable non-specific lipid-transfer protein 3" [Triticum aestivum (taxid:4565)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 34/111 (30%), Positives = 55/111 (49%)

Query:     4 AIVSMLVLVALMQMIV--TPGEAITCGQVDASLASCIPYLIAGGNP-DAACCDGVKNLKS 60
             A+ + +VL A++ M+       A++CGQVD+ LA C+ Y+    +     CC GV+ L  
Sbjct:     8 AVAAAVVLAAVVLMMAGREASAALSCGQVDSKLAPCVAYVTGRASSISKECCSGVQGLNG 67

Query:    61 ITPATADGRXXXXXXXXXXXRYPNIKEDAASSLPQKCGVQMNIPISKTTNC 111
             +  ++ D +              +I     S +P KCGV +  PIS +TNC
Sbjct:    68 LARSSPDRKIACRCLKSLATSIKSINMGKVSGVPGKCGVSVPFPISMSTNC 118

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

TAIR|locus:2081840 LTP12 "lipid transfer protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 34/102 (33%), Positives = 50/102 (49%)

Query:    11 LVALMQMIVTPGEA-ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGR 69
             L+ L   + +P E+ I CG V ++LA C+ YL   G   + CC GVK+L  +   T D +
Sbjct:    11 LIVLTIYMASPTESTIQCGTVTSTLAQCLTYLTNSGPLPSQCCVGVKSLYQLAQTTPDRK 70

Query:    70 XXXXXXXXXXXRYPNIKEDAASSLPQKCGVQMNIPISKTTNC 111
                            +  D  ++LP  CGV +  PIS +TNC
Sbjct:    71 QVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNC 112

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0009505 "plant-type cell wall" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2062116 AT2G18370 [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 32/111 (28%), Positives = 53/111 (47%)

Query:     5 IVSMLVLVALMQMIVTPG---EAITCGQVDASLASCIPYLIAG-GNPDAACCDGVKNLKS 60
             ++  L +++++ +   P     AI+C  V   L  C+ YL +G GNP   CCDGVK+L +
Sbjct:     3 VLKCLAIISVLGIFFIPRYSESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAA 62

Query:    61 ITPATADGRXXXXXXXXXXXRYPNIKEDAASSLPQKCGVQMNIPISKTTNC 111
              T  +AD +               +K + A +L   CG  + +  S T +C
Sbjct:    63 ATTTSADKKAACQCIKSVANSV-TVKPELAQALASNCGASLPVDASPTVDC 112

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

TAIR|locus:2064107 LTP2 "lipid transfer protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 33/113 (29%), Positives = 52/113 (46%)

Query:     3 AAIVSMLVLVALMQMI---VTPGEAITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLK 59
             A ++ +  +V    ++   +T    ++CG V+ +LA CI YL  G      CC+GV NLK
Sbjct:     2 AGVMKLACMVLACMIVAGPITANALMSCGTVNGNLAGCIAYLTRGAPLTQGCCNGVTNLK 61

Query:    60 SITPATADGRXXXXXXXXXXXRY-PNIKEDAASSLPQKCGVQMNIPISKTTNC 111
             ++   T D +              P +    A+ LP  C V +   IS +TNC
Sbjct:    62 NMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNC 114

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0006649 "phospholipid transfer to membrane" evidence=NAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0012501 "programmed cell death" evidence=IGI

GO:0009414 "response to water deprivation" evidence=IEP

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2081855 LTP5 "lipid transfer protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 39/109 (35%), Positives = 52/109 (47%)

Query:     6 VSMLVLVALMQMIVTPGEA-ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPA 64
             +S LV+V ++       EA I+CG V  SL  C  YL  GG     CC GV+ L S+   
Sbjct:     7 LSTLVIVCMLVTAPMASEAAISCGAVTGSLGQCYNYLTRGGFIPRGCCSGVQRLNSLART 66

Query:    65 TADGRXXXXXXXXXXXRYPNIKEDA--ASSLPQKCGVQMNIPISKTTNC 111
             T D R           R    + +A  A+ LP  C V+++ PIS  TNC
Sbjct:    67 TRD-RQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNC 114

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2V3C1	NLTPB_ARATH	No assigned EC number	0.4615	0.9203	0.8739	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	113
cd01960	89	cd01960, nsLTP1, nsLTP1: Non-specific lipid-transf	2e-28
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	3e-05
pfam14368	95	pfam14368, LTP_2, Probable lipid transfer	0.003
cd00010	63	cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibit	0.004

>gnl|CDD|238926 cd01960, nsLTP1, nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

 Score = 98.6 bits (246), Expect = 2e-28
 Identities = 43/88 (48%), Positives = 56/88 (63%), Gaps = 1/88 (1%)

Query: 25  ITCGQVDASLASCIPYLIAGGN-PDAACCDGVKNLKSITPATADGRAACECVKAAAARYP 83
           I+CGQV + LA C+ YL  GG  P  ACC GVK+L  +   TAD +AAC C+K+AAA   
Sbjct: 1   ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGIS 60

Query: 84  NIKEDAASSLPQKCGVQMNIPISKTTNC 111
            +    A+ LP KCGV +  PIS +T+C
Sbjct: 61  GLNPGRAAGLPGKCGVSIPYPISPSTDC 88

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans. Length = 89

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 39.1 bits (91), Expect = 3e-05
 Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 13/82 (15%)

Query: 27  CGQVDASLASCIPYLIAGGN-PDAACCDGVKNLKSITPATADGRAACEC--VKAAAARYP 83
           CGQV   LA C  YL  G   P   CC  ++ L          +A C C  ++A      
Sbjct: 1   CGQVLLKLAPCAGYLQGGCQVPSQQCCSQLRQL----------QAQCRCTAIRAIVLGIE 50

Query: 84  NIKEDAASSLPQKCGVQMNIPI 105
            I   AA+SLP  CGV +   I
Sbjct: 51  GINPQAAASLPSMCGVNVPYGI 72

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|222713 pfam14368, LTP_2, Probable lipid transfer

 Score = 34.4 bits (79), Expect = 0.003
 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 8/94 (8%)

Query: 8  MLVLVALMQMIVTPGEAITCGQVDASLASCI--PYLIAGGNPDAACCDGVKNLKSITPAT 65
          +L ++        P  A        SL  C+   Y+     P  ACC  +K         
Sbjct: 1  VLAVLLASAAAAPPAPASAA-SCADSLLPCLGYCYVNGTAAPSPACCAALKAA-----VK 54

Query: 66 ADGRAACECVKAAAARYPNIKEDAASSLPQKCGV 99
          AD    C+ V +  A    I    A +LP+ CG+
Sbjct: 55 ADVPCLCDLVTSPLAAGFGINLTRAVALPKACGL 88

The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways. Length = 95

>gnl|CDD|237980 cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

 Score = 33.2 bits (76), Expect = 0.004
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 34 LASCIPYLIAGG-NPDAACCDGVKNLKSITPATADGRAACECVKAAAAR-YPNIKEDAAS 91
          LA C+ YL  G   P + CC G+K++    P     +  C  +    A          A 
Sbjct: 1  LAPCLSYLTGGATAPPSDCCSGLKSVVKSDP-----KCLCAALNGPGASLLGLKNATRAL 55

Query: 92 SLPQKCGV 99
          +LP  CG+
Sbjct: 56 ALPAACGL 63

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.94
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.6
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.47
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.45
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	99.39
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	99.02
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	98.95
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	92.06
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	91.64

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.94  E-value=5.1e-28  Score=155.58  Aligned_cols=88  Identities=49%  Similarity=0.969  Sum_probs=81.9

Q ss_pred             CCchhhhccccCCHHHHhCCC-CCchhhhhhhhhhhccCCcccCCcccceeeccccccCCCCCHHHHhhhhhcCCCCCCC
Q 043414           25 ITCGQVDASLASCIPYLIAGG-NPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNI  103 (113)
Q Consensus        25 ~~C~~~~~~L~~Cl~yl~~~~-~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~~~in~~~a~~Lp~~Cgv~~p~  103 (113)
                      ++|.++...|.||++|++|++ .|+++||+++++|++.++++.|++.+|+|+++...++++||++|+.+||++||+++||
T Consensus         1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~~   80 (89)
T cd01960           1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIPY   80 (89)
T ss_pred             CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCCC
Confidence            469999999999999999875 7899999999999999999999999999999877777569999999999999999999


Q ss_pred             CCCCCCCCC
Q 043414          104 PISKTTNCA  112 (113)
Q Consensus       104 ~i~~~~dC~  112 (113)
                      ||++++||+
T Consensus        81 ~i~~~~dC~   89 (89)
T cd01960          81 PISPSTDCS   89 (89)
T ss_pred             CCCCCCCCC
Confidence            999999996

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.60  E-value=7e-16  Score=95.88  Aligned_cols=66  Identities=29%  Similarity=0.600  Sum_probs=52.8

Q ss_pred             chhhhccccCCHHHHhCCC---CCchhhhhhhhhhhccCCcccCCcccceeeccccccCCCCCHHHHhhhhhcCCCCCC
Q 043414           27 CGQVDASLASCIPYLIAGG---NPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMN  102 (113)
Q Consensus        27 C~~~~~~L~~Cl~yl~~~~---~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~~~in~~~a~~Lp~~Cgv~~p  102 (113)
                      |+.....|.||++|+++++   .|++.||+++|++.        +  .|+|.+.....++.||.++|.+||++||+++|
T Consensus         1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~--------~--~C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p   69 (73)
T cd04660           1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRAD--------L--PCLCRYKTSLVLQIIDPDKAVYLPAKCGLPLP   69 (73)
T ss_pred             CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcCC--------c--CCEeeccCCCcccccCHHHHHHHHHHcCCCCC
Confidence            4544467999999999865   47789999999843        2  39998765545556999999999999999987

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.47  E-value=2.5e-14  Score=85.97  Aligned_cols=61  Identities=31%  Similarity=0.758  Sum_probs=49.8

Q ss_pred             ccCCHHHHhCCC-CCchhhhhhhhhhhccCCcccCCcccceeeccccccCCCC-CHHHHhhhhhcCCC
Q 043414           34 LASCIPYLIAGG-NPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNI-KEDAASSLPQKCGV   99 (113)
Q Consensus        34 L~~Cl~yl~~~~-~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~~~i-n~~~a~~Lp~~Cgv   99 (113)
                      |.||++|++|++ .|+++||++++++++.     +++++|.++++......++ |.+++.+||++||+
T Consensus         1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv   63 (63)
T cd00010           1 LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALPAACGL   63 (63)
T ss_pred             CcchHHHHcCCCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence            579999999874 7889999999998753     5677788888765544344 79999999999996

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.45  E-value=1.2e-14  Score=93.50  Aligned_cols=72  Identities=31%  Similarity=0.665  Sum_probs=45.6

Q ss_pred             CCCCchhhhccccCC---HHHHhCCCCCchhhhhhhhhhhccCCcccCCcccceeecccc-ccCCCCCHHHHhhhhhcCC
Q 043414           23 EAITCGQVDASLASC---IPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAA-ARYPNIKEDAASSLPQKCG   98 (113)
Q Consensus        23 ~~~~C~~~~~~L~~C---l~yl~~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~-~~~~~in~~~a~~Lp~~Cg   98 (113)
                      ...+|.+   .|.||   +.|++++..|+++||+++|++.+     .+..++|+.+++.. ..+ +||.+|+.+||++||
T Consensus        18 ~~~~c~~---~l~~c~~~~~~~~~~~~Ps~~CC~~l~~~~~-----~~~~ClC~~~~~~~~~~~-~in~~~a~~Lp~~Cg   88 (96)
T PF14368_consen   18 CCCSCAN---SLLPCCPCLCYVTGGPAPSAACCSALKSVVQ-----ADPPCLCQLLNSPGAPGF-GINVTRALALPAACG   88 (96)
T ss_dssp             BTTB-HC---CCCHH--HHHHHCC-----HHHHHHHCC---------HCCHHHCCCC-CCHCHH-CCTCHHHHHHHHHCT
T ss_pred             CcchhHH---HHhccccchhccCCCCCCCHHHHHHHHHhcc-----CCCCCHHHhcCccccccC-CcCHHHHHHHHHHcC
Confidence            3456644   46666   78888767899999999999853     24556666666554 344 799999999999999


Q ss_pred             CCCCC
Q 043414           99 VQMNI  103 (113)
Q Consensus        99 v~~p~  103 (113)
                      ++.|.
T Consensus        89 ~~~~~   93 (96)
T PF14368_consen   89 VPVPP   93 (96)
T ss_dssp             SS-S-
T ss_pred             CCCCC
Confidence            99884

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.39  E-value=3.4e-13  Score=82.48  Aligned_cols=58  Identities=29%  Similarity=0.735  Sum_probs=46.4

Q ss_pred             cccCCHHHHhCCCCCchhhhhhhhhhhccCCcccCCccccee--eccccccCCCCCHHHHhhhhhcCCCCCC
Q 043414           33 SLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACEC--VKAAAARYPNIKEDAASSLPQKCGVQMN  102 (113)
Q Consensus        33 ~L~~Cl~yl~~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C--lk~~~~~~~~in~~~a~~Lp~~Cgv~~p  102 (113)
                      .|.+|++|++++..||++||+.+|+           +..|+|  +++..... .||.++|.+||++||+++|
T Consensus         5 ~L~~C~~ai~~~~~Ps~~CC~~Lk~-----------~~~CLC~y~~~p~l~~-~i~~~~A~~l~~~Cgv~~P   64 (66)
T cd01959           5 QLSPCLPAILGGSPPSAACCAKLKE-----------QQSCLCQYAKNPSLKQ-YVNSPNARKVLAACGVPYP   64 (66)
T ss_pred             hcccCHHHHhCCCCCCHHHHHHHhc-----------CCCCeeeeecCccHHh-hcCcHHHHHHHHHcCCCCC
Confidence            6999999999888899999999998           124666  44432222 5999999999999999986

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=99.02  E-value=3.3e-10  Score=69.23  Aligned_cols=68  Identities=40%  Similarity=0.817  Sum_probs=51.4

Q ss_pred             chhhhccccCCHHHHhCC--C-CCchhhhhhhhhhhccCCcccCCcccceeeccccccCC-C----CCHHHHhhhhhcCC
Q 043414           27 CGQVDASLASCIPYLIAG--G-NPDAACCDGVKNLKSITPATADGRAACECVKAAAARYP-N----IKEDAASSLPQKCG   98 (113)
Q Consensus        27 C~~~~~~L~~Cl~yl~~~--~-~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~~-~----in~~~a~~Lp~~Cg   98 (113)
                      |..+...+.+|.+|++++  . .|+..||++++.+.         ...|+|........+ .    ++..++.+||+.||
T Consensus         1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~   71 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACG   71 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcC
Confidence            556666778999999976  3 67789999999984         246888653322221 1    58999999999999


Q ss_pred             CCCCC
Q 043414           99 VQMNI  103 (113)
Q Consensus        99 v~~p~  103 (113)
                      +..++
T Consensus        72 ~~~~~   76 (79)
T smart00499       72 VPPPY   76 (79)
T ss_pred             CCCCC
Confidence            99885

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=98.95  E-value=1.2e-11  Score=78.82  Aligned_cols=67  Identities=30%  Similarity=0.738  Sum_probs=50.5

Q ss_pred             ccccCCHHHHhCCC-CCchhhhhhhhhhhccCCcccCCcccceeeccccccC----------CCCCHHHHhhhhhcCCCC
Q 043414           32 ASLASCIPYLIAGG-NPDAACCDGVKNLKSITPATADGRAACECVKAAAARY----------PNIKEDAASSLPQKCGVQ  100 (113)
Q Consensus        32 ~~L~~Cl~yl~~~~-~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~----------~~in~~~a~~Lp~~Cgv~  100 (113)
                      ..+.+|.+|++++. .|+..||++|++|..        ++.|..++......          .+++..+|.+||+.||++
T Consensus        13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l~~--------~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~   84 (90)
T PF00234_consen   13 VRLSPCLPYLQGGCQQPSQQCCQQLRQLDP--------QCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVS   84 (90)
T ss_dssp             SHHHGGHHHHTTSSSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSS
T ss_pred             ccccccHHHHhcccccchHHHhHHHHHHhH--------HhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCC
Confidence            45899999999875 578899999999854        34444455433331          158899999999999999


Q ss_pred             CCCCCCCCCCC
Q 043414          101 MNIPISKTTNC  111 (113)
Q Consensus       101 ~p~~i~~~~dC  111 (113)
                      +|+     +||
T Consensus        85 ~~~-----~~C   90 (90)
T PF00234_consen   85 PPY-----TDC   90 (90)
T ss_dssp             SSS-----S-G
T ss_pred             CCC-----CCC
Confidence            997     666

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=92.06  E-value=0.27  Score=31.36  Aligned_cols=70  Identities=26%  Similarity=0.426  Sum_probs=42.3

Q ss_pred             chhhhccccCCHHHHhC-----CCCCchhhhhhhhhhhccCCcccCCcccceeeccccccCC-CCCHH-HHhhhhhcCCC
Q 043414           27 CGQVDASLASCIPYLIA-----GGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYP-NIKED-AASSLPQKCGV   99 (113)
Q Consensus        27 C~~~~~~L~~Cl~yl~~-----~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~~-~in~~-~a~~Lp~~Cgv   99 (113)
                      |-.-..+|.-|..-+..     +.+|..+||+-++.+.+.      --+.|+|-.-.++.++ ++|.+ +..-|-..||-
T Consensus         4 CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl------dAA~CLCtaikan~lgi~~~~pv~l~llln~CGk   77 (85)
T cd01958           4 CPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL------DAAVCLCTAIKANILGISINIPVALSLLLNSCGR   77 (85)
T ss_pred             CCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhh------heeeeeeeeeeccccCcccccChhHHHHHHHHcC
Confidence            44333457778777743     124557999999998753      1368999533233332 33344 34556678999


Q ss_pred             CCC
Q 043414          100 QMN  102 (113)
Q Consensus       100 ~~p  102 (113)
                      ..|
T Consensus        78 ~~P   80 (85)
T cd01958          78 NVP   80 (85)
T ss_pred             cCC
Confidence            988

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=91.64  E-value=0.088  Score=33.60  Aligned_cols=69  Identities=28%  Similarity=0.523  Sum_probs=43.5

Q ss_pred             cccCCHHHHhC-----CCCCchhhhhhhhhhhccCCcccCCcccceee--ccccccCCCCCHH-HHhhhhhcCCCCCCCC
Q 043414           33 SLASCIPYLIA-----GGNPDAACCDGVKNLKSITPATADGRAACECV--KAAAARYPNIKED-AASSLPQKCGVQMNIP  104 (113)
Q Consensus        33 ~L~~Cl~yl~~-----~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Cl--k~~~~~~~~in~~-~a~~Lp~~Cgv~~p~~  104 (113)
                      +|.-|...+.-     +.++..+||+-++.+.+.      --+.|+|-  |...-.+-++|.+ .+..|-..||...|  
T Consensus         8 kLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~------~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p--   79 (85)
T PF14547_consen    8 KLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADL------DAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP--   79 (85)
T ss_pred             hhhhhhhhhhhhccccCCCCCCCcChHHhCcccc------hHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc--
Confidence            67788888721     123557999999998753      23679994  4322221123333 45677888999988  


Q ss_pred             CCCCCCC
Q 043414          105 ISKTTNC  111 (113)
Q Consensus       105 i~~~~dC  111 (113)
                        ++++|
T Consensus        80 --~gf~C   84 (85)
T PF14547_consen   80 --SGFTC   84 (85)
T ss_pred             --CCCcC
Confidence              66666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	113
2alg_A	92	Crystal Structure Of Peach Pru P3, The Prototypic M		2e-13
1uva_A	91	Lipid Binding In Rice Nonspecific Lipid Transfer Pr		3e-11
1siy_A	91	Nmr Structure Of Mung Bean Non-Specific Lipid Trans		1e-10
1bwo_A	90	The Crystal Structure Of Wheat Non-Specific Transfe		2e-10
1fk0_A	93	Structural Basis Of Non-Specific Lipid Binding In M		7e-10
1cz2_A	90	Solution Structure Of Wheat Ns-Ltp Complexed With P		7e-10
2ljo_A	93	3d Solution Structure Of Lipid Transfer Protein Lc-		4e-09
1mid_A	91	Non-Specific Lipid Transfer Protein 1 From Barley I		1e-07
1be2_A	91	Lipid Transfer Protein Complexed With Palmitate, Nm		1e-07
1t12_A	91	Solution Structure Of A New Ltp1 Length = 91		1e-07

>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member Of The Family Of Plant Non-Specific Lipid Transfer Protein Pan-Allergens Length = 92

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 51/88 (57%)
Query: 25  ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRYPN 84
           ITCGQV +SLA CIPY+  GG    ACC+G++N+ ++   T D +             P 
Sbjct: 2   ITCGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPG 61
Query: 85  IKEDAASSLPQKCGVQMNIPISKTTNCA 112
           +  + A++LP KCGV +   IS +TNCA
Sbjct: 62  VNPNNAAALPGKCGVSIPYKISASTNCA 89

>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1 Complexes From Oryza Sativa Length = 91

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%)
Query: 25  ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRYPN 84
           ITCGQV++++  C+ Y   G  P AACC GV++LK+    TAD R               
Sbjct: 1   ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 60
Query: 85  IKEDAASSLPQKCGVQMNIPISKTTNCAK 113
           +    A+S+P KCGV +   IS + +C++
Sbjct: 61  LNAGNAASIPSKCGVSVPYTISASIDCSR 89

>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer Protein 1 Length = 91

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 46/87 (52%)
Query: 25  ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRYPN 84
           +TCGQV  +LA CI +L  GG    +CC GVKN+ + +  TAD R               
Sbjct: 1   MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRG 60
Query: 85  IKEDAASSLPQKCGVQMNIPISKTTNC 111
           I  + A +LP KCGV +   IS +TNC
Sbjct: 61  INPNNAEALPGKCGVNIPYKISTSTNC 87

>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer Protein Complexed With Two Molecules Of Phospholipid At 2.1 A Resolution Length = 90

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 45/89 (50%)
Query: 25  ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRYPN 84
           I CG VD+ +  C+ Y+  G  P   CCDGVKNL +   + +D +              N
Sbjct: 1   IDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHN 60
Query: 85  IKEDAASSLPQKCGVQMNIPISKTTNCAK 113
           + ED A S+P KCGV +   IS   +C++
Sbjct: 61  LNEDNARSIPPKCGVNLPYTISLNIDCSR 89

>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize Lipid-Transfer Protein Complexes With Capric Acid Revealed By High-Resolution X-Ray Crystallography Length = 93

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 24  AITCGQVDASLASCIPYLIA-GGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRY 82
           AI+CGQV +++A CI Y    G  P A CC GV++L +    TAD R             
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60
Query: 83  PNIKEDAASSLPQKCGVQMNIPISKTTNCAK 113
             +    A+S+P KCGV +   IS +T+C++
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSR 91

>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With Prostaglandin B2 Length = 90

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 27  CGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRYPNIK 86
           CG VD+ +  C+ Y+  G  P   CCDGVKNL +   + +D +              N+ 
Sbjct: 3   CGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLN 62
Query: 87  EDAASSLPQKCGVQMNIPISKTTNCAK 113
           ED A S+P KCGV +   IS   +C++
Sbjct: 63  EDNARSIPPKCGVNLPYTISLNIDCSR 89

>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2 Length = 93

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 43/88 (48%)
Query: 24  AITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRYP 83
           AI+CG V + L+ C+ YL  G  P   CC GVK L +    T D +              
Sbjct: 1   AISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSIT 60
Query: 84  NIKEDAASSLPQKCGVQMNIPISKTTNC 111
            +  + A++LP KCGV +   IS TTNC
Sbjct: 61  KLNTNNAAALPGKCGVNIPYKISTTTNC 88

>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl Length = 91

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)
Query: 25  ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRYPN 84
           + CGQVD+ +  C+ Y+  G  P   CC+GV++L +   ++ D +              N
Sbjct: 1   LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHN 60
Query: 85  IKEDAASSLPQKCGVQMNIPISKTTNCAK 113
           +  + A+S+P KC V +   IS   +C++
Sbjct: 61  LNLNNAASIPSKCNVNVPYTISPDIDCSR 89

>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10 Structures Length = 91

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)
Query: 25  ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRYPN 84
           + CGQVD+ +  C+ Y+  G  P   CC+GV++L +   ++ D +              N
Sbjct: 1   LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHN 60
Query: 85  IKEDAASSLPQKCGVQMNIPISKTTNCAK 113
           +  + A+S+P KC V +   IS   +C++
Sbjct: 61  LNLNNAASIPSKCNVNVPYTISPDIDCSR 89

>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1 Length = 91

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 24  AITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRXXXXXXXXXXXRYP 83
           AITCGQV ++LA C+ YL   G P   CC GVK L +    T D +              
Sbjct: 1   AITCGQVTSNLAPCLAYLRNTG-PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS 59
Query: 84  NIKEDAASSLPQKCGVQMNIPISKTTNCAK 113
            I    A+ LP  CGV +   IS +T+C+K
Sbjct: 60  GINLGKAAGLPSTCGVNIPYKISPSTDCSK 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	113
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	1e-29
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	2e-29
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	9e-29
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	2e-28
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	2e-28

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A* Length = 92

 Score =  101 bits (253), Expect = 1e-29
 Identities = 42/89 (47%), Positives = 59/89 (66%)

Query: 25  ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPN 84
           ITCGQV +SLA CIPY+  GG    ACC+G++N+ ++   T D +AAC C+K  +A  P 
Sbjct: 2   ITCGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPG 61

Query: 85  IKEDAASSLPQKCGVQMNIPISKTTNCAK 113
           +  + A++LP KCGV +   IS +TNCA 
Sbjct: 62  VNPNNAAALPGKCGVSIPYKISASTNCAT 90

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A* Length = 90

 Score =  100 bits (250), Expect = 2e-29
 Identities = 36/89 (40%), Positives = 52/89 (58%)

Query: 25  ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPN 84
           I CG VD+ +  C+ Y+  G  P   CCDGVKNL +   + +D ++AC C+K  A    N
Sbjct: 1   IDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHN 60

Query: 85  IKEDAASSLPQKCGVQMNIPISKTTNCAK 113
           + ED A S+P KCGV +   IS   +C++
Sbjct: 61  LNEDNARSIPPKCGVNLPYTISLNIDCSR 89

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var} Length = 91

 Score = 98.8 bits (246), Expect = 9e-29
 Identities = 42/89 (47%), Positives = 54/89 (60%)

Query: 25  ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPN 84
           +TCGQV  +LA CI +L  GG    +CC GVKN+ + +  TAD RA C C+KAAA     
Sbjct: 1   MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRG 60

Query: 85  IKEDAASSLPQKCGVQMNIPISKTTNCAK 113
           I  + A +LP KCGV +   IS +TNC  
Sbjct: 61  INPNNAEALPGKCGVNIPYKISTSTNCNS 89

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Length = 93

 Score = 98.4 bits (245), Expect = 2e-28
 Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 1/91 (1%)

Query: 24  AITCGQVDASLASCIPYLIAGGN-PDAACCDGVKNLKSITPATADGRAACECVKAAAARY 82
           AI+CGQV +++A CI Y    G+ P A CC GV++L +    TAD RAAC C+K AAA  
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60

Query: 83  PNIKEDAASSLPQKCGVQMNIPISKTTNCAK 113
             +    A+S+P KCGV +   IS +T+C++
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSR 91

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum} Length = 91

 Score = 98.0 bits (244), Expect = 2e-28
 Identities = 39/90 (43%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 24  AITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYP 83
           AITCGQV ++LA C+ YL     P   CC GVK L +    T D + AC C+K+AA    
Sbjct: 1   AITCGQVTSNLAPCLAYLR-NTGPLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS 59

Query: 84  NIKEDAASSLPQKCGVQMNIPISKTTNCAK 113
            I    A+ LP  CGV +   IS +T+C+K
Sbjct: 60  GINLGKAAGLPSTCGVNIPYKISPSTDCSK 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	113
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.97
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.96
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.96
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.96
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.96
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.96
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.63
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	99.55
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	99.53
3ob4_A	500	Conglutin, maltose ABC transporter periplasmic pro	89.54
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	89.1

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.97  E-value=4.3e-33  Score=180.11  Aligned_cols=90  Identities=43%  Similarity=0.875  Sum_probs=85.2

Q ss_pred             CCCchhhhccccCCHHHHhCCCCCchhhhhhhhhhhccCCcccCCcccceeeccccccCCCCCHHHHhhhhhcCCCCCCC
Q 043414           24 AITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNI  103 (113)
Q Consensus        24 ~~~C~~~~~~L~~Cl~yl~~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~~~in~~~a~~Lp~~Cgv~~p~  103 (113)
                      +++|+++...|.||++|++|++.|++.||+|+++|++.++|+.|||++|+|+|+....+++||.+||.+||++||+++||
T Consensus         1 AisC~~v~~~L~pCl~Yv~g~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~~p~   80 (93)
T 2ljo_A            1 AISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPY   80 (93)
T ss_dssp             CCSSHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCCCSS
T ss_pred             CCCHHHHHHHHHhHHHHHcCCCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCCCCC
Confidence            47899999999999999999878999999999999999999999999999999877777789999999999999999999


Q ss_pred             CCCCCCCCCC
Q 043414          104 PISKTTNCAK  113 (113)
Q Consensus       104 ~i~~~~dC~~  113 (113)
                      |||+++||++
T Consensus        81 ~Is~~~dC~~   90 (93)
T 2ljo_A           81 KISTTTNCNT   90 (93)
T ss_dssp             CCSTTCCGGG
T ss_pred             CCCCCCCCCC
Confidence            9999999985

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.96  E-value=9.1e-32  Score=172.93  Aligned_cols=89  Identities=40%  Similarity=0.874  Sum_probs=83.3

Q ss_pred             CCchhhhccccCCHHHHhCCCCCchhhhhhhhhhhccCCcccCCcccceeeccccccCCCCCHHHHhhhhhcCCCCCCCC
Q 043414           25 ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNIP  104 (113)
Q Consensus        25 ~~C~~~~~~L~~Cl~yl~~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~~~in~~~a~~Lp~~Cgv~~p~~  104 (113)
                      ++|+++...|.||++|++|++.|+++||+++|+|++.++|+.|||..|+|+++.+.++++||.++|.+||++||+++|||
T Consensus         1 i~C~~v~~~L~pCl~y~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p~~   80 (90)
T 1bwo_A            1 IDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYT   80 (90)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCCCSSC
T ss_pred             CCHHHHHHhhcccHHHHcCCCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCCCCCC
Confidence            47999999999999999987678899999999999999999999999999988777776899999999999999999999


Q ss_pred             CCCCCCCCC
Q 043414          105 ISKTTNCAK  113 (113)
Q Consensus       105 i~~~~dC~~  113 (113)
                      ||+++||++
T Consensus        81 is~~~dC~~   89 (90)
T 1bwo_A           81 ISLNIDCSR   89 (90)
T ss_dssp             CCTTCCGGG
T ss_pred             CCCCCCCCC
Confidence            999999985

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.96  E-value=3.1e-31  Score=171.36  Aligned_cols=90  Identities=46%  Similarity=0.909  Sum_probs=83.4

Q ss_pred             CCCchhhhccccCCHHHHhCCC-CCchhhhhhhhhhhccCCcccCCcccceeeccccccCCCCCHHHHhhhhhcCCCCCC
Q 043414           24 AITCGQVDASLASCIPYLIAGG-NPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMN  102 (113)
Q Consensus        24 ~~~C~~~~~~L~~Cl~yl~~~~-~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~~~in~~~a~~Lp~~Cgv~~p  102 (113)
                      +++|+++...|.||++|++|++ .|+++||+|+|++++.++|+.|||..|+|++....++++||.++|.+||++||+++|
T Consensus         1 a~~C~~v~~~L~pCl~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v~~p   80 (93)
T 1afh_A            1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP   80 (93)
T ss_dssp             CCSSHHHHHHHGGGHHHHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHCCCS
T ss_pred             CCChHHHHHhccCcHHHHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCCCCC
Confidence            3689999999999999999876 577899999999999999999999999999877777778999999999999999999


Q ss_pred             CCCCCCCCCCC
Q 043414          103 IPISKTTNCAK  113 (113)
Q Consensus       103 ~~i~~~~dC~~  113 (113)
                      ||||+++||++
T Consensus        81 ~~is~~~dC~~   91 (93)
T 1afh_A           81 YTISTSTDCSR   91 (93)
T ss_dssp             SCCSTTCCSSS
T ss_pred             CCCCCCCCCcc
Confidence            99999999986

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.96  E-value=4.6e-31  Score=169.94  Aligned_cols=89  Identities=47%  Similarity=0.864  Sum_probs=83.1

Q ss_pred             CCchhhhccccCCHHHHhCCCCCchhhhhhhhhhhccCCcccCCcccceeeccccccCCCCCHHHHhhhhhcCCCCCCCC
Q 043414           25 ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNIP  104 (113)
Q Consensus        25 ~~C~~~~~~L~~Cl~yl~~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~~~in~~~a~~Lp~~Cgv~~p~~  104 (113)
                      ++|+++...|.||++|++|++.|+++||+++|+|++.++|+.|||..|+|+++.+.++++||.++|.+||++||+++||+
T Consensus         1 i~C~~v~~~L~pCl~yv~~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP~~Cgv~~p~~   80 (91)
T 1siy_A            1 MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYK   80 (91)
T ss_dssp             CCTTTTHHHHHHHHHHHTSCSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHTCCCSSC
T ss_pred             CCHHHHHHhccCcHHHHhCCCCCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHHHHcCCCCCCC
Confidence            47999999999999999987778899999999999999999999999999987767776799999999999999999999


Q ss_pred             CCCCCCCCC
Q 043414          105 ISKTTNCAK  113 (113)
Q Consensus       105 i~~~~dC~~  113 (113)
                      ||+++||++
T Consensus        81 is~~~dC~~   89 (91)
T 1siy_A           81 ISTSTNCNS   89 (91)
T ss_dssp             SCTTSCSST
T ss_pred             CCCCCCCcc
Confidence            999999986

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.96  E-value=3.2e-31  Score=170.72  Aligned_cols=89  Identities=44%  Similarity=0.808  Sum_probs=82.4

Q ss_pred             CCCchhhhccccCCHHHHhCCCCCchhhhhhhhhhhccCCcccCCcccceeeccccccCCCCCHHHHhhhhhcCCCCCCC
Q 043414           24 AITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNI  103 (113)
Q Consensus        24 ~~~C~~~~~~L~~Cl~yl~~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~~~in~~~a~~Lp~~Cgv~~p~  103 (113)
                      +++|+++...|.||++|++|++.|+ +||+|+|+|++.++|+.||+..|+|+++...++++||.++|.+||++||+++||
T Consensus         1 a~~C~~v~~~L~pCl~y~~~~~~P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p~   79 (91)
T 1t12_A            1 AITCGQVTSNLAPCLAYLRNTGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPY   79 (91)
T ss_dssp             CCCHHHHHHHTHHHHHHHTTSSCCT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTCCCSS
T ss_pred             CCChHHHHHhccCcHHHHcCCCChH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCcChhHHHHHHHHcCCCCCC
Confidence            3689999999999999999865576 999999999999999999999999998776777689999999999999999999


Q ss_pred             CCCCCCCCCC
Q 043414          104 PISKTTNCAK  113 (113)
Q Consensus       104 ~i~~~~dC~~  113 (113)
                      |||+++||++
T Consensus        80 ~is~~~dC~~   89 (91)
T 1t12_A           80 KISPSTDCSK   89 (91)
T ss_dssp             CSSSSSCCTT
T ss_pred             CCCCCCCCcc
Confidence            9999999986

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.96  E-value=3.3e-31  Score=170.88  Aligned_cols=90  Identities=47%  Similarity=0.949  Sum_probs=83.7

Q ss_pred             CCCchhhhccccCCHHHHhCCCCCchhhhhhhhhhhccCCcccCCcccceeeccccccCCCCCHHHHhhhhhcCCCCCCC
Q 043414           24 AITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNI  103 (113)
Q Consensus        24 ~~~C~~~~~~L~~Cl~yl~~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~~~in~~~a~~Lp~~Cgv~~p~  103 (113)
                      +++|+++...|.||++|++|++.|+++||+++|+|++.++|++||+..|+|++.....+++||.++|.+||++||+++||
T Consensus         1 ~~~C~~v~~~L~pCl~y~~~~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~~p~   80 (92)
T 2alg_A            1 MITCGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVSIPY   80 (92)
T ss_dssp             CCCHHHHHHHHGGGHHHHHHCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCCSS
T ss_pred             CCChHHHHHhccCcHHHHcCCCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCCCCC
Confidence            36899999999999999998878889999999999999999999999999998766677689999999999999999999


Q ss_pred             CCCCCCCCCC
Q 043414          104 PISKTTNCAK  113 (113)
Q Consensus       104 ~i~~~~dC~~  113 (113)
                      +||+++||++
T Consensus        81 ~is~~~dC~~   90 (92)
T 2alg_A           81 KISASTNCAT   90 (92)
T ss_dssp             CSSTTSCGGG
T ss_pred             CCCCCCCCcc
Confidence            9999999985

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.63  E-value=1.8e-17  Score=103.15  Aligned_cols=70  Identities=26%  Similarity=0.602  Sum_probs=58.1

Q ss_pred             CCCchhhhccccCCHHHHhCC--CCCchhhhhhhhhhhccCCcccCCcccceeeccc---cccCCCCCHHHHhhhhhcCC
Q 043414           24 AITCGQVDASLASCIPYLIAG--GNPDAACCDGVKNLKSITPATADGRAACECVKAA---AARYPNIKEDAASSLPQKCG   98 (113)
Q Consensus        24 ~~~C~~~~~~L~~Cl~yl~~~--~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~---~~~~~~in~~~a~~Lp~~Cg   98 (113)
                      ..+|+++...|.||++|++++  ..||++||+++|+.        |  ..|+|.+..   ..++ +||.++|.+||++||
T Consensus         2 ~~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~~--------~--~~ClC~~~~~~~~~~~-gin~~~A~~LP~~Cg   70 (77)
T 2rkn_A            2 IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------D--FACLCGYKNSPWLGSF-GVDPELASALPKQCG   70 (77)
T ss_dssp             CCBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTTC--------C--HHHHHTTTTCHHHHHH-TBCHHHHHHHHHHTT
T ss_pred             cchHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHhc--------C--cCCcCcccCCcchhhc-CcCHHHHHHHHHHcC
Confidence            467999998999999999974  47889999999971        2  378887654   4556 699999999999999


Q ss_pred             CCCCCC
Q 043414           99 VQMNIP  104 (113)
Q Consensus        99 v~~p~~  104 (113)
                      +++||.
T Consensus        71 v~~p~~   76 (77)
T 2rkn_A           71 LANAPT   76 (77)
T ss_dssp             CSCCCC
T ss_pred             CCCCCC
Confidence            999864

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=99.55  E-value=2e-16  Score=96.10  Aligned_cols=58  Identities=24%  Similarity=0.626  Sum_probs=48.5

Q ss_pred             cccCCHHHHhCCCCCchhhhhhhhhhhccCCcccCCccccee--eccccccCCCCCHHHHhhhhhcCCCCCC
Q 043414           33 SLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACEC--VKAAAARYPNIKEDAASSLPQKCGVQMN  102 (113)
Q Consensus        33 ~L~~Cl~yl~~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C--lk~~~~~~~~in~~~a~~Lp~~Cgv~~p  102 (113)
                      .|.||++|+++++.||++||++||+           +..|+|  +++..... +||.++|.+||++||+++|
T Consensus         6 ~L~pC~~~v~~~~~Ps~~CC~~lk~-----------~~~ClC~~~k~~~~~~-~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            6 QLAVCASAILSGAKPSGECCGNLRA-----------QQGCFCQYAKDPTYGQ-YIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             TTHHHHHHHTTCCCCCHHHHHHHHH-----------HSSHHHHGGGCSTTHH-HHTCHHHHHHHHHHTSCCS
T ss_pred             hcccCHHHHcCCCCCCHHHHHhhCC-----------CCCCCCccccCccccc-ccCHHHHHHHHHHcCCCCC
Confidence            6899999999888899999999997           247888  66543322 6999999999999999876

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=99.53  E-value=3e-16  Score=95.84  Aligned_cols=63  Identities=24%  Similarity=0.574  Sum_probs=51.1

Q ss_pred             CchhhhccccCCHHHHhCCCCCchhhhhhhhhhhccCCcccCCccccee--eccccccCCCCCHHHHhhhhhcCCCCCC
Q 043414           26 TCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACEC--VKAAAARYPNIKEDAASSLPQKCGVQMN  102 (113)
Q Consensus        26 ~C~~~~~~L~~Cl~yl~~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C--lk~~~~~~~~in~~~a~~Lp~~Cgv~~p  102 (113)
                      +|+..  .|.||++|+++++.||++||++||+.           ..|+|  +++..... +||.++|.+||++||+++|
T Consensus         2 ~C~~~--~L~pC~~~v~~~~~Ps~~CC~~lk~~-----------~~ClC~~~k~~~~~~-~in~~~A~~Lp~~Cgv~~P   66 (69)
T 1l6h_A            2 GCNAG--QLTVCTGAIAGGARPTAACCSSLRAQ-----------QGCFCQFAKDPRYGR-YVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             CSTTT--THHHHHHHHTTCCSTTHHHHHHHHHH-----------HHHHHHHTTCSSHHH-HTTTTTGGGCCCCCSSCSC
T ss_pred             CCChh--hcccCHHHHcCCCCCCHHHHHhhCCC-----------CCCCCccccCccccc-ccCHHHHHHHHHHcCCCCC
Confidence            46554  68999999998878999999999972           46888  66543322 6999999999999999876

>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}

Probab=89.54  E-value=0.016  Score=45.57  Aligned_cols=51  Identities=18%  Similarity=0.564  Sum_probs=30.8

Q ss_pred             hhhhhhhhhhhccCCcccCCccccee--ecccccc-----CCC---CC-HHHHhhhhhcCCCCCC--CCCCC
Q 043414           49 AACCDGVKNLKSITPATADGRAACEC--VKAAAAR-----YPN---IK-EDAASSLPQKCGVQMN--IPISK  107 (113)
Q Consensus        49 ~~CC~~v~~l~~~~~t~~~~~~~C~C--lk~~~~~-----~~~---in-~~~a~~Lp~~Cgv~~p--~~i~~  107 (113)
                      .+||..|+.+..        +.-|+|  ++.....     .+.   -. ..+|..||..||+..|  .+|++
T Consensus       429 ~~cc~~l~~~~~--------~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~c~~~~~~~c~~~~  492 (500)
T 3ob4_A          429 ERCCNELNEFEN--------NQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQRCDLDV  492 (500)
T ss_dssp             HHHHHHHGGGTT--------CHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTHHHHTTCCCCSCCCCC-
T ss_pred             HHHHHHHHhCCc--------ccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHhhCchhcCCCCCccCCccC
Confidence            579999998641        246777  4332211     000   01 2459999999999977  55555

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=89.10  E-value=0.12  Score=31.78  Aligned_cols=68  Identities=19%  Similarity=0.433  Sum_probs=44.0

Q ss_pred             cccCCHHHHhCCCCCchhhhhhhhhhhccCCcccCCcccceeeccccccCCCCCHHHHhh-hhhcCCCCCCCCCCCCCCC
Q 043414           33 SLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNIKEDAASS-LPQKCGVQMNIPISKTTNC  111 (113)
Q Consensus        33 ~L~~Cl~yl~~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~~~in~~~a~~-Lp~~Cgv~~p~~i~~~~dC  111 (113)
                      +|.-|.+-+.|.-.|...||+-++.|.+.      --++|+|-.-.+..+  +|.+...+ |-..||...|    +.|.|
T Consensus        10 kLgvCanvL~g~~~~~~~CC~Ll~GL~dl------eAAvCLCtaik~Lgi--lnlpv~L~llln~Cgk~~P----~gF~C   77 (80)
T 1hyp_A           10 DLSICLNILGGSLGTVDDCCALIGGLGDI------EAIVCLCIQLRALGI--LNLNRNLQLILNSCGRSYP----SNATC   77 (80)
T ss_dssp             CCGGGGGGGGTCCTTHHHHHHHHHTSCHH------HHHHHHHHHHHHHTC--SCHHHHHHHHHHHTTCSSC----CCCCC
T ss_pred             chhHHHHHhCcCCCCCCccchhhhCcchh------hhhhhhhhhccccce--eecChhHHHHHHHhCCcCc----CCCCC
Confidence            57788887754323557899999998653      135899942112122  46665544 6678999988    66666


Q ss_pred             C
Q 043414          112 A  112 (113)
Q Consensus       112 ~  112 (113)
                      .
T Consensus        78 ~   78 (80)
T 1hyp_A           78 P   78 (80)
T ss_dssp             S
T ss_pred             C
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	113
d1mida_	91	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	8e-27
d1fk5a_	93	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	6e-25

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 91

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 93.0 bits (231), Expect = 8e-27
 Identities = 29/89 (32%), Positives = 50/89 (56%)

Query: 25  ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPN 84
           + CGQVD+ +  C+ Y+  G  P   CC+GV++L +   ++ D +  C C+K  A    N
Sbjct: 1   LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHN 60

Query: 85  IKEDAASSLPQKCGVQMNIPISKTTNCAK 113
           +  + A+S+P KC V +   IS   +C++
Sbjct: 61  LNLNNAASIPSKCNVNVPYTISPDIDCSR 89

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Length = 93

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

 Score = 88.0 bits (218), Expect = 6e-25
 Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 1/91 (1%)

Query: 24  AITCGQVDASLASCIPYLIAGGN-PDAACCDGVKNLKSITPATADGRAACECVKAAAARY 82
           AI+CGQV +++A CI Y    G+ P A CC GV++L +    TAD RAAC C+K AAA  
Sbjct: 1   AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60

Query: 83  PNIKEDAASSLPQKCGVQMNIPISKTTNCAK 113
             +    A+S+P KCGV +   IS +T+C++
Sbjct: 61  SGLNAGNAASIPSKCGVSIPYTISTSTDCSR 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	113
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.96
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.96
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	99.18
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	99.09
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	88.61
d1s6da_	103	Methionine-rich 2S protein (albumin 8) {Common sun	84.16

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.96  E-value=5.2e-32  Score=172.86  Aligned_cols=89  Identities=33%  Similarity=0.817  Sum_probs=83.5

Q ss_pred             CCchhhhccccCCHHHHhCCCCCchhhhhhhhhhhccCCcccCCcccceeeccccccCCCCCHHHHhhhhhcCCCCCCCC
Q 043414           25 ITCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMNIP  104 (113)
Q Consensus        25 ~~C~~~~~~L~~Cl~yl~~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~~~in~~~a~~Lp~~Cgv~~p~~  104 (113)
                      ++|+++...|.||++|++|++.|++.||+|+++|++.++|+.||+++|+|+++.+..+.+||.+|+.+||++||+++|||
T Consensus         1 i~C~~v~~~l~pCl~Yl~g~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~~p~p   80 (91)
T d1mida_           1 LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYT   80 (91)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCCSC
T ss_pred             CCHHHHHHHHHhhHHHHcCCCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCCCCCC
Confidence            57999999999999999998889999999999999999999999999999998766665799999999999999999999


Q ss_pred             CCCCCCCCC
Q 043414          105 ISKTTNCAK  113 (113)
Q Consensus       105 i~~~~dC~~  113 (113)
                      ||+++||++
T Consensus        81 is~~~dC~~   89 (91)
T d1mida_          81 ISPDIDCSR   89 (91)
T ss_dssp             CCTTCCGGG
T ss_pred             CCCCCCCCC
Confidence            999999985

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.96  E-value=7.6e-32  Score=172.72  Aligned_cols=90  Identities=46%  Similarity=0.909  Sum_probs=83.7

Q ss_pred             CCCchhhhccccCCHHHHhCCC-CCchhhhhhhhhhhccCCcccCCcccceeeccccccCCCCCHHHHhhhhhcCCCCCC
Q 043414           24 AITCGQVDASLASCIPYLIAGG-NPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNIKEDAASSLPQKCGVQMN  102 (113)
Q Consensus        24 ~~~C~~~~~~L~~Cl~yl~~~~-~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~~~in~~~a~~Lp~~Cgv~~p  102 (113)
                      +++|+++...|.||++|++|++ .|++.||+|+++|++.++|+.|||++|+|+++....+.+||.+|+.+||++||+++|
T Consensus         1 Ai~C~~v~~~l~pCl~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~l~   80 (93)
T d1fk5a_           1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP   80 (93)
T ss_dssp             CCCHHHHHHHHGGGHHHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCS
T ss_pred             CCCHHHHHHHhhhhHHHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCCCC
Confidence            4789999999999999999876 689999999999999999999999999999987665557999999999999999999


Q ss_pred             CCCCCCCCCCC
Q 043414          103 IPISKTTNCAK  113 (113)
Q Consensus       103 ~~i~~~~dC~~  113 (113)
                      |||++++||++
T Consensus        81 ~pis~~~dCs~   91 (93)
T d1fk5a_          81 YTISTSTDCSR   91 (93)
T ss_dssp             SCCSTTCCGGG
T ss_pred             CCCCCCCCCCc
Confidence            99999999985

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=99.18  E-value=1.6e-12  Score=76.93  Aligned_cols=62  Identities=24%  Similarity=0.636  Sum_probs=50.6

Q ss_pred             chhhhccccCCHHHHhCCCCCchhhhhhhhhhhccCCcccCCccccee--eccccccCCCCCHHHHhhhhhcCCCCCC
Q 043414           27 CGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACEC--VKAAAARYPNIKEDAASSLPQKCGVQMN  102 (113)
Q Consensus        27 C~~~~~~L~~Cl~yl~~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C--lk~~~~~~~~in~~~a~~Lp~~Cgv~~p  102 (113)
                      |+..  +|+||++.+++++.||.+||+.+|+           |..|+|  +|+...+. .||..++.++-+.||+++|
T Consensus         2 C~p~--~L~~C~~Ai~~g~~PS~~CC~kLke-----------Q~~ClC~Y~kdP~~~~-yv~spnarkv~~aCgvp~P   65 (67)
T d1tuka1           2 CQAS--QLAVCASAILSGAKPSGECCGNLRA-----------QQGCFCQYAKDPTYGQ-YIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             CCGG--GGGGGHHHHHHCCCCCHHHHHHHHH-----------HGGGHHHHTTCTTTHH-HHTSHHHHHHHHHTTCCCC
T ss_pred             CChh--hccccHHHHhcCCCCcHHHHHHHHh-----------cCCccceecCCccHHH-HcCCHHHHHHHHhcCCCCC
Confidence            6655  6999999999999999999999998           445666  45543222 6999999999999999987

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.09  E-value=1.6e-12  Score=77.36  Aligned_cols=63  Identities=24%  Similarity=0.590  Sum_probs=51.3

Q ss_pred             CchhhhccccCCHHHHhCCCCCchhhhhhhhhhhccCCcccCCccccee--eccccccCCCCCHHHHhhhhhcCCCCCC
Q 043414           26 TCGQVDASLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACEC--VKAAAARYPNIKEDAASSLPQKCGVQMN  102 (113)
Q Consensus        26 ~C~~~~~~L~~Cl~yl~~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C--lk~~~~~~~~in~~~a~~Lp~~Cgv~~p  102 (113)
                      .|+..  +|+||++.+++++.||.+||+.+|+           |..|+|  +|+...+. +||..++.++-..||+++|
T Consensus         2 ~C~p~--~L~~C~~ai~~g~~PS~~CC~kLke-----------Q~~ClC~Y~k~P~~~~-yv~spnarkv~~aCgvp~P   66 (69)
T d1l6ha_           2 GCNAG--QLTVCTGAIAGGARPTAACCSSLRA-----------QQGCFCQFAKDPRYGR-YVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             CSTTT--THHHHHHHHTTCCSTTHHHHHHHHH-----------HHHHHHHHTTCSSHHH-HTTTTTGGGCCCCCSSCSC
T ss_pred             CCChh--hccccHHHHhCCCCCcHHHHHHHHh-----------cCCccceeccCccHHH-HcCCHHHHHHHHhcCCCCC
Confidence            47765  6999999999999999999999998           445666  45543222 6999999999999999987

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=88.61  E-value=0.062  Score=31.14  Aligned_cols=68  Identities=19%  Similarity=0.433  Sum_probs=43.3

Q ss_pred             cccCCHHHHhCCCCCchhhhhhhhhhhccCCcccCCcccceeeccccccCCCCCHHHH-hhhhhcCCCCCCCCCCCCCCC
Q 043414           33 SLASCIPYLIAGGNPDAACCDGVKNLKSITPATADGRAACECVKAAAARYPNIKEDAA-SSLPQKCGVQMNIPISKTTNC  111 (113)
Q Consensus        33 ~L~~Cl~yl~~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~Clk~~~~~~~~in~~~a-~~Lp~~Cgv~~p~~i~~~~dC  111 (113)
                      ++.-|.+-+.+.-.+...||.-++.+.+.      --++|+|-.--+..+  +|.... .-|-..||-..|    ++|.|
T Consensus         5 Klg~C~nvLg~~~~~~~~CC~Ll~GL~dl------eAAvCLCtaika~~l--lnvpv~l~llln~Cgk~~P----~gF~C   72 (75)
T d1hypa_           5 DLSICLNILGGSLGTVDDCCALIGGLGDI------EAIVCLCIQLRALGI--LNLNRNLQLILNSCGRSYP----SNATC   72 (75)
T ss_dssp             CCGGGGGGGGTCCTTHHHHHHHHHTSCHH------HHHHHHHHHHHHHTC--SCHHHHHHHHHHHTTCSSC----CCCCC
T ss_pred             chhhHHHHhcCccCCCCCcchHHhhHHHH------HHHHHHHHHHHHhhh--ccccchHHHHHHHcCCcCc----CCCcC
Confidence            46667777765445567899999988653      125799942112233  555544 335668999988    66666


Q ss_pred             C
Q 043414          112 A  112 (113)
Q Consensus       112 ~  112 (113)
                      -
T Consensus        73 P   73 (75)
T d1hypa_          73 P   73 (75)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1s6da_ a.52.1.3 (A:) Methionine-rich 2S protein (albumin 8) {Common sunflower (Helianthus annuus) [TaxId: 4232]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: Methionine-rich 2S protein (albumin 8)
species: Common sunflower (Helianthus annuus) [TaxId: 4232]

Probab=84.16  E-value=0.16  Score=31.01  Aligned_cols=59  Identities=25%  Similarity=0.462  Sum_probs=38.0

Q ss_pred             ccccCCHHHHhC-----CC-------CCc-hhhhhhhhhhhccCCcccCCccccee--eccccccC-C--CC--CHHHHh
Q 043414           32 ASLASCIPYLIA-----GG-------NPD-AACCDGVKNLKSITPATADGRAACEC--VKAAAARY-P--NI--KEDAAS   91 (113)
Q Consensus        32 ~~L~~Cl~yl~~-----~~-------~Ps-~~CC~~v~~l~~~~~t~~~~~~~C~C--lk~~~~~~-~--~i--n~~~a~   91 (113)
                      ..|..|-.||.-     +.       .+. ..||+-++.+..          .|.|  |+..+... .  .+  -...|.
T Consensus        19 q~L~~Cq~Yl~q~~~~~~~~~~~~~~e~~~~~CC~qL~q~~~----------~CrC~~L~~avq~q~~q~~~~~~~q~Ak   88 (103)
T d1s6da_          19 EMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDE----------KCMCPAIMMMLNEPMWIRMRDQVMSMAH   88 (103)
T ss_dssp             CSTTHHHHHHTTTTSSCCCCSSSCCCCCCSHHHHHHHHHSCG----------GGSSHHHHHHTTSTTCSSTHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHhccCCCCCccCchHHHHHHHHHHHcCCC----------CCcCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            369999999953     11       122 479999999764          5777  44332211 1  11  135689


Q ss_pred             hhhhcCCCC
Q 043414           92 SLPQKCGVQ  100 (113)
Q Consensus        92 ~Lp~~Cgv~  100 (113)
                      .||+.||+.
T Consensus        89 ~LPs~C~i~   97 (103)
T d1s6da_          89 NLPIECNLM   97 (103)
T ss_dssp             HHHHHTTSS
T ss_pred             hChHhcCCC
Confidence            999999997