Citrus Sinensis ID: 043421

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
Protein Sequence
MAETLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVADLISPNSGVPPGGWSSLHKLSVCCPGLLHAGVLLENSDFGLERELGPDSDYQSCSTSAIQPTSTTTTAEACSSNLNSVTDCSWSLFDDLYYDTVYDKSESHDDDGGGDGSLVVEDVDKCEVKVGGESAKKRKICRSFRSHLASGVWNLCREQGNKLLASRFRGDCLYICDWPGCLHTEEKRNYMLFRGIFKNFKRSRVWRTINDGNRSKIDVNCAFCNCKETWDLHSAFCLRRVFGYHDDGEPVVRAYVCENGHVSGAWTDLPLYT
Secondary Structure (PSIPRED)
cccHHcccccHHHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccHHHHcccccccccccccHHHHcHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccEEEEcccccccccccccccEEEHHHccHHHHHHHHHHHHcccccccccccccccccccHHHHHccccccccEEEccccccEEEEEEEcccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHcHHHHHHHccHHHcccccccccccccHHHHHHHHHHEccccccccEEEccccccccHHccccccccccccccccccccccccccccccccccccccccHHHHcHHHcccccccccccccccccccccccccccccccccccccccEEccccccccccccccccHHcccHcHHHHccccEEEEEcccccccHHHHHHHEEEEccEccccHHHHHHHHHccccccccccccccccccHccHHHHHHHHHHcccccccccEEEEEEEcccccccccccccccc
Coil and Loop (DISEMBL)
MAETLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRnicwktkcsksipAVVAdlispnsgvppggwsslhklsvccpgllhagvllensdfglerelgpdsdyqscstsaiqptsttttaeacssnlnsvtdcswslfddlyydtvydkseshdddgggdgslvvedvdkcevkvggesakkrKICRSFRSHLASGVWNLCREQGNKLLAsrfrgdclyicdwpgclhteeKRNYMLFRGIFKNFKRSRVWRtindgnrskidvncafcncketwdLHSAFCLRRvfgyhddgepvVRAYVCEnghvsgawtdlplyt
Flexible Loop (DISEMBL)
maetlfsklsddvVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVADLISPNSGVPPGGWSSLHKLSVCCPGLLHAGVLLENSDFGLERELGPDSDYQSCSTSAIQPTSTTTTAEACSSNLNSVTDCSWSLFDDLYYDTVYDKSESHDDDGGGDGSLVVEDVDKCEvkvggesakkrkicRSFRSHLASGVWNLCREQGNKLLASRFRGDCLYICDWPGCLHTEEKRNYMLFRgifknfkrsrvwrtindgnrskidVNCAFCNCKETWDLHSAFCLRRVFGYHDDGEPVVRAYVCENghvsgawtdlplyt
Low Complexity Region (SEG)
MAETLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVADLISPNSGVPPGGWSSLHKLSVCCPGLLHAGVLLENSDFGLERELGPDSDYQSCstsaiqptsttttaeacssNLNSVTDCSWSLFDDLYYDTVYDKSESHdddgggdgSLvvedvdkcevkvGGESAKKRKICRSFRSHLASGVWNLCREQGNKLLASRFRGDCLYICDWPGCLHTEEKRNYMLFRGIFKNFKRSRVWRTINDGNRSKIDVNCAFCNCKETWDLHSAFCLRRVFGYHDDGEPVVRAYVCENGHVSGAWTDLPLYT
Disordered region (IsUnstruct)
******SKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVADLISPNSGVPPGGWSSLHKLSVCCPGLLHAGVLLENSDFGL********************************NLNSVTDCSWSLFDDLYYDTVYD**************LVVEDVDKCEVKVGGESAKKRKICRSFRSHLASGVWNLCREQGNKLLASRFRGDCLYICDWPGCLHTEEKRNYMLFRGIFKNFKRSRVWRTINDGNRSKIDVNCAFCNCKETWDLHSAFCLRRVFGYHDDGEPVVRAYVCENGHVSGAWTDLPL**
Disordered Region (DISOPRED)
********LSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPA****************WSSLHKLSVCCPGLLHAGVLLENSDFGLERELGP*****************************SVTDCSWSLFDDLYYDTVY********************************************HLASGVWNLCREQGNKLLASRFRGDCLYICDWPGCLHTEEKRNYMLFRGIFKNFKRSRVWRTINDGNRSKIDVNCAFCNCKETWDLHSAFCLRRVFGYHDDGEPVVRAYVCENGHVSGAWTDLPLYT
Disordered Region (DISEMBL)
MAETLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVADLISPNSGVPPGGWSSLHKLSVCCPGLLHAGVLLENSDFGLEREL***************************SNLNSVTDCSWSLFDDLYYDTVYDK**********DGSLVVEDVDKCEVKVGGESAKKRKICRSFRSHLASGVWNLCREQGNKLLASRFRGDCLYICDWPGCLHTEEKRNYMLFRGIFKNFKRSRVWRTINDGNRSKIDVNCAFCNCKETWDLHSAFCLRRVFGYHDDGEPVVRAYVCENGHVSGAWTDLPLYT
Disordered Region (DISPRO)
****LFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVADLISPNSGVPPGGWSSLHKLSVCCPGLLHAGVLLENSDFGLERELGPDS******************************DCSWSLFDDLYYDTVYDKS*********************************K**RSFRSHLASGVWNLCREQGNKLLASRFRGDCLYICDWPGCLHTEEKRNYMLFRGIFKNFKRSRVWRTINDGNRSKIDVNCAFCNCKETWDLHSAFCLRRVFGYHDDGEPVVRAYVCENGHVSGAWTDLPLYT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAETLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVADLISPNSGVPPGGWSSLHKLSVCCPGLLHAGVLLENSDFGLERELGPDSDYQSCSTSAIQPTSTTTTAEACSSNLNSVTDCSWSLFDDLYYDTVYDKSESHDDDGGGDGSLVVEDVDKCEVKVGGESAKKRKICRSFRSHLASGVWNLCREQGNKLLASRFRGDCLYICDWPGCLHTEEKRNYMLFRGIFKNFKRSRVWRTINDGNRSKIDVNCAFCNCKETWDLHSAFCLRRVFGYHDDGEPVVRAYVCENGHVSGAWTDLPLYT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	326	2.2.26 [Sep-21-2011]
Q8LEA8	336	Phytochrome A-associated	yes	no	0.969	0.940	0.618	1e-118
Q9LF38	293	EID1-like F-box protein 1	no	no	0.226	0.252	0.341	2e-06
Q9FLZ8	249	EID1-like F-box protein 2	no	no	0.211	0.277	0.329	2e-05

>sp|Q8LEA8|EID1_ARATH Phytochrome A-associated F-box protein OS=Arabidopsis thaliana GN=EID1 PE=1 SV=2

 Score =  425 bits (1092), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/346 (61%), Positives = 254/346 (73%), Gaps = 30/346 (8%)

Query: 1   MAETLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVA 60
           MAE++FS + +DVV NIFFKL+DDPRNWARLACVC KFSS+VRN+C KT+C  +IP V++
Sbjct: 1   MAESVFSCIPEDVVFNIFFKLQDDPRNWARLACVCTKFSSIVRNVCCKTQCYSAIPTVIS 60

Query: 61  DLISPNSG---------------VPPGGWSSLHKLSVCCPGLLHAGVLLENSDFGLEREL 105
           DL+                     PPGGW+SL+KL+VCCPGL HAG+LLENSDFGLEREL
Sbjct: 61  DLLPLPPSAAASASSSTAADSSLTPPGGWASLYKLAVCCPGLFHAGILLENSDFGLEREL 120

Query: 106 GPDSDYQSCSTSAIQPTSTTTTAEACSSNLNSVTDCSWSLFDDLYYDTVY--DKSESHDD 163
           GPD +     T+     +    ++   S L + +   WSL+DDLY DT+      +S DD
Sbjct: 121 GPDQNLDPKPTTTDLALNDEEVSKPVGSGLETTS--FWSLYDDLYTDTIPAPPPEDSIDD 178

Query: 164 DGGGDGSLVVEDVDKCEVKVGGESA--KKRKICRSFRSHLASGVWNLCREQGNKLLASRF 221
                     E+++  E++ G +    K+RKICRS  SHLASG WNL REQGNKLLASRF
Sbjct: 179 QE--------EEIETSEIRPGRDLPVRKRRKICRSLGSHLASGGWNLSREQGNKLLASRF 230

Query: 222 RGDCLYICDWPGCLHTEEKRNYMLFRGIFKNFKRSRVWRTINDGNRSKID-VNCAFCNCK 280
           RGDCLYIC+WPGC+H EEKRNYMLFRG+FK+FKRSRVWRTINDGNRSK   + CAFC C 
Sbjct: 231 RGDCLYICNWPGCIHVEEKRNYMLFRGVFKDFKRSRVWRTINDGNRSKTSGLKCAFCLCD 290

Query: 281 ETWDLHSAFCLRRVFGYHDDGEPVVRAYVCENGHVSGAWTDLPLYT 326
           ETWDLHS+FCLRRVFG+HDDGEPVVRAYVCENGHVSGAWT LPLYT
Sbjct: 291 ETWDLHSSFCLRRVFGFHDDGEPVVRAYVCENGHVSGAWTALPLYT 336

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Negative regulator of the phyA signaling pathway that shifts the responsiveness of the phyA signaling system associated with hypocotyl elongation from red to far-red wavelength.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF38|EDL1_ARATH EID1-like F-box protein 1 OS=Arabidopsis thaliana GN=EDL1 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%)

Query: 9   LSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVADLISPNSG 68
           L++DV+L +F  L  +P+  A L+CVC  F    + + WK  C    P ++ DL S  S 
Sbjct: 22  LNEDVLLLVFQHLNWNPKLVATLSCVCRWFDDFAKRVLWKEFCKTRAPKMMLDLQSSGSH 81

Query: 69  VPPGGWSSLHKLSVCCPGLLHAGVL 93
              G W +L KL + C G    G+ 
Sbjct: 82  CIDGNWRALGKLLIYCSGCTQGGLF 106

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLZ8|EDL2_ARATH EID1-like F-box protein 2 OS=Arabidopsis thaliana GN=EDL2 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%)

Query: 9   LSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVADLISPNSG 68
           LS++V+  +   L  +P   A L+CVC  F  L + + WK  C    P +++DL S  S 
Sbjct: 22  LSEEVLFLMVQHLNWNPNVIATLSCVCKWFDDLAKRLLWKEFCRARAPKMMSDLQSSGSH 81

Query: 69  VPPGGWSSLHKLSVCCPGLLHAGVL 93
              G W +L KL + C G    G+ 
Sbjct: 82  SVDGSWRALGKLLIYCSGSSKGGLF 106

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
147853033	720	hypothetical protein VITISV_000965 [Viti	0.975	0.441	0.725	1e-138
225437352	330	PREDICTED: phytochrome A-associated F-bo	0.975	0.963	0.728	1e-137
255564160	332	Phytochrome A-associated F-box protein,	0.984	0.966	0.730	1e-135
449532186	379	PREDICTED: phytochrome A-associated F-bo	0.975	0.839	0.684	1e-128
224128494	334	f-box family protein [Populus trichocarp	0.981	0.958	0.699	1e-127
224068332	331	predicted protein [Populus trichocarpa]	0.972	0.957	0.694	1e-126
15235367	336	phytochrome A-associated F-box protein [	0.969	0.940	0.618	1e-116
21553661	337	unknown [Arabidopsis thaliana]	0.969	0.937	0.613	1e-116
297814063	315	hypothetical protein ARALYDRAFT_490321 [	0.929	0.961	0.622	1e-113
312282927	337	unnamed protein product [Thellungiella h	0.960	0.928	0.605	1e-112

>gi|147853033|emb|CAN81258.1| hypothetical protein VITISV_000965 [Vitis vinifera]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 240/331 (72%), Positives = 273/331 (82%), Gaps = 13/331 (3%)

Query: 3   ETLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVADL 62
           ET+FSKLSDDVVL+I FKLEDDPR WARLACVC KFSSL+RN+CWKTKCS++ P++VADL
Sbjct: 396 ETVFSKLSDDVVLSILFKLEDDPRYWARLACVCTKFSSLIRNVCWKTKCSQTXPSIVADL 455

Query: 63  IS-PNSGVPPGGWSSLHKLSVCCPGLLHAGVLLENSDFGLERELGPDSDYQSCSTSAIQP 121
            S P    PPGGW++LHKLSVCCPGLLH+GVLLENSDFGLERELGPD DY+   +  I  
Sbjct: 456 FSGPGDSSPPGGWAALHKLSVCCPGLLHSGVLLENSDFGLERELGPDEDYRKAGSFQITV 515

Query: 122 TSTTTTAEACSSNLNSVTD----CSWSLFDDLYYDTVYDKSESHDDDGGGDGSLVVEDVD 177
              TT A A SS+ +  ++    CSWSLFDDLY+DT+Y+ SE+ D+      + +  +V+
Sbjct: 516 GDATTPAVASSSHHDGNSEVSDSCSWSLFDDLYFDTLYNVSETMDE------TQIGVEVE 569

Query: 178 KCEVKVGGE--SAKKRKICRSFRSHLASGVWNLCREQGNKLLASRFRGDCLYICDWPGCL 235
              VKVGG+   +K  K CR  RSHLASGVWNL REQGNKLLASRFRGDCLYICDWPGC+
Sbjct: 570 NGAVKVGGDLPVSKTVKSCRPLRSHLASGVWNLSREQGNKLLASRFRGDCLYICDWPGCV 629

Query: 236 HTEEKRNYMLFRGIFKNFKRSRVWRTINDGNRSKIDVNCAFCNCKETWDLHSAFCLRRVF 295
           H EEKRNYMLFRG+FKNFKRSRVWRTINDGNRSK+D+NCAFC CKETWDLHSAFCLRR F
Sbjct: 630 HVEEKRNYMLFRGVFKNFKRSRVWRTINDGNRSKVDLNCAFCPCKETWDLHSAFCLRRGF 689

Query: 296 GYHDDGEPVVRAYVCENGHVSGAWTDLPLYT 326
           GYHDDGEPVVRAYVCENGHVSGAWT+ PLYT
Sbjct: 690 GYHDDGEPVVRAYVCENGHVSGAWTEYPLYT 720

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437352|ref|XP_002266159.1| PREDICTED: phytochrome A-associated F-box protein-like [Vitis vinifera]

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/331 (72%), Positives = 274/331 (82%), Gaps = 13/331 (3%)

Query: 3   ETLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVADL 62
           ET+FSKLSDDVVL+I FKLEDDPR WARLACVC KFSSL+RN+CWKTKCS++IP++VADL
Sbjct: 6   ETVFSKLSDDVVLSILFKLEDDPRYWARLACVCTKFSSLIRNVCWKTKCSQTIPSIVADL 65

Query: 63  IS-PNSGVPPGGWSSLHKLSVCCPGLLHAGVLLENSDFGLERELGPDSDYQSCSTSAIQP 121
            S P    PPGGW++LHKLSVCCPGLLH+GVLLENSDFGLERELGPD DY+   +  I  
Sbjct: 66  FSGPGDSSPPGGWAALHKLSVCCPGLLHSGVLLENSDFGLERELGPDEDYRKAGSFQITV 125

Query: 122 TSTTTTAEACSSNLNSVTD----CSWSLFDDLYYDTVYDKSESHDDDGGGDGSLVVEDVD 177
              TT A A SS+ +  ++    CSWSLFDDLY+DT+Y+ SE+ D+      + +  +V+
Sbjct: 126 GDATTPAVASSSHHDGNSEVSDSCSWSLFDDLYFDTLYNVSETMDE------TQIGVEVE 179

Query: 178 KCEVKVGGE--SAKKRKICRSFRSHLASGVWNLCREQGNKLLASRFRGDCLYICDWPGCL 235
              VKVGG+   +K  K CR  RSHLASGVWNL REQGNKLLASRFRGDCLYICDWPGC+
Sbjct: 180 NGAVKVGGDLPVSKTVKSCRPLRSHLASGVWNLSREQGNKLLASRFRGDCLYICDWPGCV 239

Query: 236 HTEEKRNYMLFRGIFKNFKRSRVWRTINDGNRSKIDVNCAFCNCKETWDLHSAFCLRRVF 295
           H EEKRNYMLFRG+FKNFKRSRVWRTINDGNRSK+D+NCAFC CKETWDLHSAFCLRR F
Sbjct: 240 HVEEKRNYMLFRGVFKNFKRSRVWRTINDGNRSKVDLNCAFCPCKETWDLHSAFCLRRGF 299

Query: 296 GYHDDGEPVVRAYVCENGHVSGAWTDLPLYT 326
           GYHDDGEPVVRAYVCENGHVSGAWT+ PLYT
Sbjct: 300 GYHDDGEPVVRAYVCENGHVSGAWTEYPLYT 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564160|ref|XP_002523077.1| Phytochrome A-associated F-box protein, putative [Ricinus communis] gi|223537639|gb|EEF39262.1| Phytochrome A-associated F-box protein, putative [Ricinus communis]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 241/330 (73%), Positives = 269/330 (81%), Gaps = 9/330 (2%)

Query: 4   TLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVADLI 63
           ++FSKL+DD+VL IFFKLEDDPRNWARLACVC KF+SL+RNIC+K KC ++IP+VV+DL+
Sbjct: 5   SIFSKLADDIVLTIFFKLEDDPRNWARLACVCTKFTSLIRNICFKAKCHRTIPSVVSDLL 64

Query: 64  SPNSGVPPGGWSSLHKLSVCCPGLLHAGVLLENSDFGLERELGPDSDYQSCSTSAIQPTS 123
           + + G  PGGWSSLHKLSVCCPGLLHAG LLE+SDFGLERELGPD +Y   S S    + 
Sbjct: 65  ASSDGAIPGGWSSLHKLSVCCPGLLHAGFLLEHSDFGLERELGPDDNYHKTSVSRTTSSQ 124

Query: 124 TTTTAEA-----CSSNLNSVT--DCSWSLFDDLYYDTVYDKSESHDDDGGGDGSLVVEDV 176
                       CS+  N+    DCSWSLFDDLYYDT+YD SES D +G  D   +  D 
Sbjct: 125 PPPPPPPGPSSDCSNTNNNTQNNDCSWSLFDDLYYDTIYDVSESEDVNGSADVVSINRD- 183

Query: 177 DKCEVKVGGESAKKRKICRSFRSHLASGVWNLCREQGNKLLASRFRGDCLYICDWPGCLH 236
           DK  +K GG   K+RKI RS RSHLASGVWNL REQGNKLLASRFRGD LYICDWPGC+H
Sbjct: 184 DKTVLK-GGGVCKRRKISRSLRSHLASGVWNLSREQGNKLLASRFRGDSLYICDWPGCVH 242

Query: 237 TEEKRNYMLFRGIFKNFKRSRVWRTINDGNRSKIDVNCAFCNCKETWDLHSAFCLRRVFG 296
            EEKRNYMLFRGIFKNFKRSRVWRTINDGNR KID+NCAFC CKETWDLHSAFCLRRVFG
Sbjct: 243 MEEKRNYMLFRGIFKNFKRSRVWRTINDGNRRKIDLNCAFCGCKETWDLHSAFCLRRVFG 302

Query: 297 YHDDGEPVVRAYVCENGHVSGAWTDLPLYT 326
           YHDDGEP+VRAYVCENGHVSGAWTD+PLYT
Sbjct: 303 YHDDGEPIVRAYVCENGHVSGAWTDVPLYT 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532186|ref|XP_004173063.1| PREDICTED: phytochrome A-associated F-box protein-like [Cucumis sativus]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/342 (68%), Positives = 268/342 (78%), Gaps = 24/342 (7%)

Query: 1   MAETLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVA 60
           MA++LFS L DD++LNIFFKLEDDPRNWARLACV  KFS  +RNICWKTKCS +IP++V+
Sbjct: 46  MADSLFSTLPDDILLNIFFKLEDDPRNWARLACVSTKFSCTIRNICWKTKCSNAIPSLVS 105

Query: 61  DLISPNSGVPPGGWSSLHKLSVCCPGLLHAGVLLENSDFGLERELGPDSDYQSCSTSAI- 119
           DL+  +S +P GGW+SLHKL+VCCPGL+H+GVLLENSDFGLERELGPD +Y    +S   
Sbjct: 106 DLLVGDS-IPAGGWASLHKLAVCCPGLVHSGVLLENSDFGLERELGPDENYMKLGSSQYS 164

Query: 120 QPTSTTTTAEACSSNLN---------SVTDCSWSLFDDLYYDTVYDKSESHDDDGGGDGS 170
           QP S  ++      N +         S +DC+WSL+DDLY DT+Y+ SE+ D      GS
Sbjct: 165 QPESNPSSTALFEVNSDLSASASASASASDCAWSLYDDLYLDTMYNDSEAPDVLDPQIGS 224

Query: 171 LVVE------DVDKCEVKVGGESAKKRKICRSFRSHLASGVWNLCREQGNKLLASRFRGD 224
             VE      D + C        +K+RKICRS RSHLASGVWNL REQGNKLL SRFRGD
Sbjct: 225 TKVEKGVFMTDREFC-------VSKRRKICRSMRSHLASGVWNLSREQGNKLLRSRFRGD 277

Query: 225 CLYICDWPGCLHTEEKRNYMLFRGIFKNFKRSRVWRTINDGNRSKIDVNCAFCNCKETWD 284
            LYICDWPGC+H EEKRNYMLFRGIFKNFK S VWRTI DGNR+KID+NCAFC+CKETWD
Sbjct: 278 SLYICDWPGCVHIEEKRNYMLFRGIFKNFKGSHVWRTIKDGNRNKIDLNCAFCSCKETWD 337

Query: 285 LHSAFCLRRVFGYHDDGEPVVRAYVCENGHVSGAWTDLPLYT 326
           LHSAFCLRRVFGYHDDGEPVVRAYVCENGHVSGAWTDLPLYT
Sbjct: 338 LHSAFCLRRVFGYHDDGEPVVRAYVCENGHVSGAWTDLPLYT 379

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128494|ref|XP_002320346.1| f-box family protein [Populus trichocarpa] gi|222861119|gb|EEE98661.1| f-box family protein [Populus trichocarpa]

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/333 (69%), Positives = 272/333 (81%), Gaps = 13/333 (3%)

Query: 4   TLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVADLI 63
           T FS+LS+DVVLNI  KLEDDPRNWARLACVC +FSSLVR+ICW++KC+K+IP+VVADL+
Sbjct: 5   TDFSRLSEDVVLNILSKLEDDPRNWARLACVCSRFSSLVRDICWRSKCNKTIPSVVADLL 64

Query: 64  -SPNSGVPPGGWSSLHKLSVCCPGLLHAGVLLENSDFGLERELGPDSDYQSCSTSAIQPT 122
            SP+S  P GGWS+L+KL+VCCPGLLHAGVLLE SDFGLERELGPD  ++   T+   P 
Sbjct: 65  PSPDSSFP-GGWSALYKLAVCCPGLLHAGVLLELSDFGLERELGPDDYFRKSKTTPPIPH 123

Query: 123 STTTTAEACSSNLNSVTDCSWSLFDDLYYDTVYDKSESHDDDGG---GDGSLVVEDVDKC 179
                +++CS+  N   D SWSLFDDLYYDTVY+ SES D       G+  ++ ++ DK 
Sbjct: 124 QPQQASDSCSNLEN--CDSSWSLFDDLYYDTVYNVSESQDGPAASCEGNEDVIGDNDDKS 181

Query: 180 -----EVKVGGESAKKRKIC-RSFRSHLASGVWNLCREQGNKLLASRFRGDCLYICDWPG 233
                +  V    +K+RK+C RS RSHLASGVWNLCREQGNKLLASRFRGDCLYICDWPG
Sbjct: 182 VDVVDKAGVDFSVSKRRKVCCRSSRSHLASGVWNLCREQGNKLLASRFRGDCLYICDWPG 241

Query: 234 CLHTEEKRNYMLFRGIFKNFKRSRVWRTINDGNRSKIDVNCAFCNCKETWDLHSAFCLRR 293
           C+HTEEKR+YMLFRGIFKNFK+SRVWRT++DGNRSK D+NCAFC CKETWDL+SAFCL+R
Sbjct: 242 CVHTEEKRSYMLFRGIFKNFKKSRVWRTVHDGNRSKTDLNCAFCECKETWDLNSAFCLKR 301

Query: 294 VFGYHDDGEPVVRAYVCENGHVSGAWTDLPLYT 326
             GYHDDGEPVVRAYVCENGHVSGAWTD PLYT
Sbjct: 302 GCGYHDDGEPVVRAYVCENGHVSGAWTDWPLYT 334

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068332|ref|XP_002302709.1| predicted protein [Populus trichocarpa] gi|222844435|gb|EEE81982.1| predicted protein [Populus trichocarpa]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/340 (69%), Positives = 262/340 (77%), Gaps = 23/340 (6%)

Query: 1   MAETL-FSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVV 59
           M ET  FSKLSDDVVLNIF KLEDDPRNWARLACVC KFSSL+R+ICWK+KC+K+IP+VV
Sbjct: 1   MTETTGFSKLSDDVVLNIFSKLEDDPRNWARLACVCTKFSSLIRDICWKSKCNKTIPSVV 60

Query: 60  ADLISPNSGVPPGGWSSLHKLSVCCPGLLHAGVLLENSDFGLERELGPDSDYQSCSTSAI 119
           +DL+S      PG WS+LHKL+VCCPGLLHAGV LE+SDFGLERELGPD  +     S  
Sbjct: 61  SDLLSSPDSPFPGAWSALHKLAVCCPGLLHAGVFLEHSDFGLERELGPDDYFHK---SKN 117

Query: 120 QPTSTTTTAEACSSNLNSVTDCSWSLFDDLYYDTVYDKSESHDDD-----------GGGD 168
            P+     A    SNL+   D SWSLFDDLYYDTVY+  ES D             GG D
Sbjct: 118 TPSQQPQQASHSGSNLDK-RDSSWSLFDDLYYDTVYNVYESQDAATVSCEAKEEVIGGND 176

Query: 169 GSLVVEDVDKCEVKVGGESA--KKRKICRSFRSHLASGVWNLCREQGNKLLASRFRGDCL 226
              V        VK  G S+  K+RKICRS  SHLASGVWNL REQGNKLLASRFRGDCL
Sbjct: 177 DKSV-----DIFVKARGISSVGKRRKICRSLSSHLASGVWNLSREQGNKLLASRFRGDCL 231

Query: 227 YICDWPGCLHTEEKRNYMLFRGIFKNFKRSRVWRTINDGNRSKIDVNCAFCNCKETWDLH 286
           YICDWPGC H  EKR+YMLFRGIFKNFK+SRVWRTI+DG+RSKID++CAFC C+ETWDL+
Sbjct: 232 YICDWPGCAHITEKRSYMLFRGIFKNFKKSRVWRTIHDGDRSKIDLSCAFCGCQETWDLN 291

Query: 287 SAFCLRRVFGYHDDGEPVVRAYVCENGHVSGAWTDLPLYT 326
           SAFCL+R FGYHDDGEPVVRAYVCENGHVSGAWTD PLYT
Sbjct: 292 SAFCLKRGFGYHDDGEPVVRAYVCENGHVSGAWTDWPLYT 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235367|ref|NP_192153.1| phytochrome A-associated F-box protein [Arabidopsis thaliana] gi|68052208|sp|Q8LEA8.2|EID1_ARATH RecName: Full=Phytochrome A-associated F-box protein; AltName: Full=Empfindlicher im dunkelroten Licht protein 1 gi|3193286|gb|AAC19270.1| T14P8.22 [Arabidopsis thaliana] gi|7269004|emb|CAB80737.1| putative protein [Arabidopsis thaliana] gi|25083158|gb|AAN72049.1| putative protein [Arabidopsis thaliana] gi|30984562|gb|AAP42744.1| At4g02440 [Arabidopsis thaliana] gi|110739507|dbj|BAF01662.1| EID1 [Arabidopsis thaliana] gi|332656772|gb|AEE82172.1| phytochrome A-associated F-box protein [Arabidopsis thaliana]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/346 (61%), Positives = 254/346 (73%), Gaps = 30/346 (8%)

Query: 1   MAETLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVA 60
           MAE++FS + +DVV NIFFKL+DDPRNWARLACVC KFSS+VRN+C KT+C  +IP V++
Sbjct: 1   MAESVFSCIPEDVVFNIFFKLQDDPRNWARLACVCTKFSSIVRNVCCKTQCYSAIPTVIS 60

Query: 61  DLISPNSG---------------VPPGGWSSLHKLSVCCPGLLHAGVLLENSDFGLEREL 105
           DL+                     PPGGW+SL+KL+VCCPGL HAG+LLENSDFGLEREL
Sbjct: 61  DLLPLPPSAAASASSSTAADSSLTPPGGWASLYKLAVCCPGLFHAGILLENSDFGLEREL 120

Query: 106 GPDSDYQSCSTSAIQPTSTTTTAEACSSNLNSVTDCSWSLFDDLYYDTVY--DKSESHDD 163
           GPD +     T+     +    ++   S L + +   WSL+DDLY DT+      +S DD
Sbjct: 121 GPDQNLDPKPTTTDLALNDEEVSKPVGSGLETTS--FWSLYDDLYTDTIPAPPPEDSIDD 178

Query: 164 DGGGDGSLVVEDVDKCEVKVGGESA--KKRKICRSFRSHLASGVWNLCREQGNKLLASRF 221
                     E+++  E++ G +    K+RKICRS  SHLASG WNL REQGNKLLASRF
Sbjct: 179 QE--------EEIETSEIRPGRDLPVRKRRKICRSLGSHLASGGWNLSREQGNKLLASRF 230

Query: 222 RGDCLYICDWPGCLHTEEKRNYMLFRGIFKNFKRSRVWRTINDGNRSKID-VNCAFCNCK 280
           RGDCLYIC+WPGC+H EEKRNYMLFRG+FK+FKRSRVWRTINDGNRSK   + CAFC C 
Sbjct: 231 RGDCLYICNWPGCIHVEEKRNYMLFRGVFKDFKRSRVWRTINDGNRSKTSGLKCAFCLCD 290

Query: 281 ETWDLHSAFCLRRVFGYHDDGEPVVRAYVCENGHVSGAWTDLPLYT 326
           ETWDLHS+FCLRRVFG+HDDGEPVVRAYVCENGHVSGAWT LPLYT
Sbjct: 291 ETWDLHSSFCLRRVFGFHDDGEPVVRAYVCENGHVSGAWTALPLYT 336

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553661|gb|AAM62754.1| unknown [Arabidopsis thaliana]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/347 (61%), Positives = 253/347 (72%), Gaps = 31/347 (8%)

Query: 1   MAETLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVA 60
           MAE++FS + +DVV  IFFKL+DDPRNWARLACVC KFSS+VRN+C KT+C  +IP V++
Sbjct: 1   MAESVFSCIPEDVVFKIFFKLQDDPRNWARLACVCTKFSSIVRNVCCKTQCYSAIPTVIS 60

Query: 61  DLISPNSG----------------VPPGGWSSLHKLSVCCPGLLHAGVLLENSDFGLERE 104
           DL+                      PPGGW+SL+KL+VCCPGL HAG+LLENSDFGLERE
Sbjct: 61  DLLPLPPSAAAASASSSTAADSSLTPPGGWASLYKLAVCCPGLFHAGILLENSDFGLERE 120

Query: 105 LGPDSDYQSCSTSAIQPTSTTTTAEACSSNLNSVTDCSWSLFDDLYYDTVY--DKSESHD 162
           LGPD +     T+     +    ++   S L + +   WSL+DDLY DT+      +S D
Sbjct: 121 LGPDQNLDPKPTTTDLALNDEEVSKPVGSGLETTS--FWSLYDDLYTDTIPAPPPEDSID 178

Query: 163 DDGGGDGSLVVEDVDKCEVKVGGESA--KKRKICRSFRSHLASGVWNLCREQGNKLLASR 220
           D          E+++  E++ G +    K+RKICRS  SHLASG WNL REQGNKLLASR
Sbjct: 179 DQE--------EEIETSEIRPGRDLPVRKRRKICRSLGSHLASGGWNLSREQGNKLLASR 230

Query: 221 FRGDCLYICDWPGCLHTEEKRNYMLFRGIFKNFKRSRVWRTINDGNRSKID-VNCAFCNC 279
           FRGDCLYIC+WPGC+H EEKRNYMLFRG+FK+FKRSRVWRTINDGNRSK   + CAFC C
Sbjct: 231 FRGDCLYICNWPGCIHVEEKRNYMLFRGVFKDFKRSRVWRTINDGNRSKTSGLKCAFCLC 290

Query: 280 KETWDLHSAFCLRRVFGYHDDGEPVVRAYVCENGHVSGAWTDLPLYT 326
            ETWDLHS+FCLRRVFG+HDDGEPVVRAYVCENGHVSGAWT LPLYT
Sbjct: 291 DETWDLHSSFCLRRVFGFHDDGEPVVRAYVCENGHVSGAWTALPLYT 337

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814063|ref|XP_002874915.1| hypothetical protein ARALYDRAFT_490321 [Arabidopsis lyrata subsp. lyrata] gi|297320752|gb|EFH51174.1| hypothetical protein ARALYDRAFT_490321 [Arabidopsis lyrata subsp. lyrata]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/331 (62%), Positives = 247/331 (74%), Gaps = 28/331 (8%)

Query: 1   MAETLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVA 60
           MAE+ FS + +DVV NIFFKL+DDPRNWARLACVC +FSS+VRN+C KT+C  +IP V++
Sbjct: 1   MAESTFSCVPEDVVFNIFFKLQDDPRNWARLACVCTRFSSIVRNVCCKTQCYSAIPTVIS 60

Query: 61  DLISPNSGV-------PPGGWSSLHKLSVCCPGLLHAGVLLENSDFGLERELGPDSDYQS 113
           DL+ P+S         PPGGW+SL KL+VCCPGL HAG+LLENSDFGLERELGPD +   
Sbjct: 61  DLLPPSSSTAADSSLPPPGGWASLFKLAVCCPGLFHAGILLENSDFGLERELGPDQNLDP 120

Query: 114 CSTSAIQPTSTTTTAEACSSNLNSVTDCSWSLFDDLYYDTVYDKSESHDDDGGGDGSLVV 173
             ++    +     ++   S L + +   WSL+DDLY DT+    E              
Sbjct: 121 KPSTTDLASDDGEVSKPLGSGLETTS--FWSLYDDLYTDTIPAPQE-------------- 164

Query: 174 EDVDKCEVKVGGESA--KKRKICRSFRSHLASGVWNLCREQGNKLLASRFRGDCLYICDW 231
            +++  +++ G +    K+RKICRS  SHLASG WNL REQGNKLLASRFRGDCLYIC+W
Sbjct: 165 -EIETSDIRPGRDLPVRKRRKICRSLGSHLASGGWNLSREQGNKLLASRFRGDCLYICNW 223

Query: 232 PGCLHTEEKRNYMLFRGIFKNFKRSRVWRTINDGN-RSKID-VNCAFCNCKETWDLHSAF 289
           PGC+H EEKRNYMLFRG+FK+FKRSRVWRTINDGN RSKI  + CAFC C ETWDLHS+F
Sbjct: 224 PGCIHVEEKRNYMLFRGVFKDFKRSRVWRTINDGNHRSKISGLKCAFCLCDETWDLHSSF 283

Query: 290 CLRRVFGYHDDGEPVVRAYVCENGHVSGAWT 320
           CLRRVFG+HDDGEPVVRAYVCENGHVSGAWT
Sbjct: 284 CLRRVFGFHDDGEPVVRAYVCENGHVSGAWT 314

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282927|dbj|BAJ34329.1| unnamed protein product [Thellungiella halophila]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/350 (60%), Positives = 248/350 (70%), Gaps = 37/350 (10%)

Query: 1   MAETLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVA 60
           MAE+ FS + +DVV  IFFKL+DDPRNWARLACVC KFSS+VRN+C KT+C  +IP V++
Sbjct: 1   MAESGFSLVPEDVVFKIFFKLQDDPRNWARLACVCTKFSSIVRNVCCKTQCYSAIPTVIS 60

Query: 61  DLISPNSGV---------------PPGGWSSLHKLSVCCPGLLHAGVLLENSDFGLEREL 105
           DL++  S                 PPGGW+SL+KL+VCCPGL HAG+LLENSDFGLEREL
Sbjct: 61  DLLTSPSASSASSSSSAAADSSLPPPGGWASLYKLAVCCPGLFHAGILLENSDFGLEREL 120

Query: 106 GPDSDYQSCSTSAIQPTSTTT--------TAEACSSNLNSVTDCSWSLFDDLYYDTVYDK 157
           GPD      S + + P  T T          +   S L + +   WSL+DDLY DT+   
Sbjct: 121 GPDE-----SLNRLDPIPTPTDPARNDGEVTKPVGSTLETTS--FWSLYDDLYTDTLSAP 173

Query: 158 SESHDDDGGGDGSLVVEDVDKCEVKVGGESAKKRKICRSFRSHLASGVWNLCREQGNKLL 217
            E   +      +  +       V+      K+RKI RS  SHLASG WNL REQGNKLL
Sbjct: 174 PEDSVEKEEEIETSEIRPGRDLPVR------KRRKIFRSLGSHLASGGWNLSREQGNKLL 227

Query: 218 ASRFRGDCLYICDWPGCLHTEEKRNYMLFRGIFKNFKRSRVWRTINDGNRSKID-VNCAF 276
           ASRFRGDCLYIC+WPGC+H EEKRNYMLFRG+FK FKRSRVWRTINDGNRSK+  + CAF
Sbjct: 228 ASRFRGDCLYICNWPGCIHVEEKRNYMLFRGVFKEFKRSRVWRTINDGNRSKVSGLKCAF 287

Query: 277 CNCKETWDLHSAFCLRRVFGYHDDGEPVVRAYVCENGHVSGAWTDLPLYT 326
           C+C ETWDLHS+FCLRRVFG+HDDGEPVVRAYVCENGHVSGAWT LPLYT
Sbjct: 288 CSCDETWDLHSSFCLRRVFGFHDDGEPVVRAYVCENGHVSGAWTALPLYT 337

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
TAIR|locus:2133259	336	EID1 "EMPFINDLICHER IM DUNKELR	0.423	0.410	0.856	7.9e-112
TAIR|locus:2180907	293	EDL1 "AT5G15440" [Arabidopsis	0.257	0.286	0.345	1.3e-17
TAIR|locus:2175668	249	EDL2 "AT5G39360" [Arabidopsis	0.257	0.337	0.333	5.6e-15
TAIR|locus:2099227	272	EDL3 "EID1-like 3" [Arabidopsi	0.407	0.488	0.275	1.2e-09

TAIR|locus:2133259 EID1 "EMPFINDLICHER IM DUNKELROTEN LICHT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 678 (243.7 bits), Expect = 7.9e-112, Sum P(2) = 7.9e-112
 Identities = 119/139 (85%), Positives = 127/139 (91%)

Query:   189 KKRKICRSFRSHLASGVWNLCREQGNKLLASRFRGDCLYICDWPGCLHTEEKRNYMLFRG 248
             K+RKICRS  SHLASG WNL REQGNKLLASRFRGDCLYIC+WPGC+H EEKRNYMLFRG
Sbjct:   198 KRRKICRSLGSHLASGGWNLSREQGNKLLASRFRGDCLYICNWPGCIHVEEKRNYMLFRG 257

Query:   249 IFKNFKRSRVWRTINDGNRSKID-VNCAFCNCKETWDLHSAFCLRRVFGYHDDGEPVVRA 307
             +FK+FKRSRVWRTINDGNRSK   + CAFC C ETWDLHS+FCLRRVFG+HDDGEPVVRA
Sbjct:   258 VFKDFKRSRVWRTINDGNRSKTSGLKCAFCLCDETWDLHSSFCLRRVFGFHDDGEPVVRA 317

Query:   308 YVCENGHVSGAWTDLPLYT 326
             YVCENGHVSGAWT LPLYT
Sbjct:   318 YVCENGHVSGAWTALPLYT 336

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009585 "red, far-red light phototransduction" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=RCA;IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

TAIR|locus:2180907 EDL1 "AT5G15440" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
 Identities = 29/84 (34%), Positives = 43/84 (51%)

Query:     9 LSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVADLISPNSG 68
             L++DV+L +F  L  +P+  A L+CVC  F    + + WK  C    P ++ DL S  S 
Sbjct:    22 LNEDVLLLVFQHLNWNPKLVATLSCVCRWFDDFAKRVLWKEFCKTRAPKMMLDLQSSGSH 81

Query:    69 VPPGGWSSLHKLSVCCPGLLHAGV 92
                G W +L KL + C G    G+
Sbjct:    82 CIDGNWRALGKLLIYCSGCTQGGL 105

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175668 EDL2 "AT5G39360" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
 Identities = 28/84 (33%), Positives = 42/84 (50%)

Query:     9 LSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVADLISPNSG 68
             LS++V+  +   L  +P   A L+CVC  F  L + + WK  C    P +++DL S  S 
Sbjct:    22 LSEEVLFLMVQHLNWNPNVIATLSCVCKWFDDLAKRLLWKEFCRARAPKMMSDLQSSGSH 81

Query:    69 VPPGGWSSLHKLSVCCPGLLHAGV 92
                G W +L KL + C G    G+
Sbjct:    82 SVDGSWRALGKLLIYCSGSSKGGL 105

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099227 EDL3 "EID1-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 41/149 (27%), Positives = 64/149 (42%)

Query:   184 GGESAKKRKICRSFRSHLASGVWNLCREQGNKLLASRFRGDCLYICDWPGCLHTEEKRNY 243
             GGES +   + +    H A       +  G   L    R D LY+ D P C H     + 
Sbjct:   113 GGESTRYFNLSQPTSGHFACES-RFSKTSGRFFLPKNCRRDLLYMSD-P-CEHQAVGGDE 169

Query:   244 ML--FRGIFKNFKRSRVWRTINDGNRSKID--VNCAFCNCKETWDLHSAFCL----RRVF 295
              L  FRG+F+ F RS+  R      ++ ++  V C +C  +  W + +A  +     R  
Sbjct:   170 HLGVFRGVFREFMRSKT-RECLVRRQAALEEKVRCPYCGGR-VWSMTAARLVPKSAARRL 227

Query:   296 GYHDDGEPVVRAYVCENGHVSGAWTDLPL 324
             G  + G   +  +VC NGH+ G    +PL
Sbjct:   228 GSREGG---LEFFVCVNGHLHGTCWLIPL 253

GO:0005634 "nucleus" evidence=IDA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LEA8	EID1_ARATH	No assigned EC number	0.6184	0.9693	0.9404	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	326
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.88
KOG2997	366	consensus F-box protein FBX9 [General function pre	98.86
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	98.6
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.4
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.36
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	91.28
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	82.4
PF11672	102	DUF3268: Protein of unknown function (DUF3268); In	80.51

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.88  E-value=1.1e-09  Score=75.98  Aligned_cols=45  Identities=36%  Similarity=0.794  Sum_probs=39.1

Q ss_pred             ccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHH-HhhhHHHhh
Q 043421            7 SKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRN-ICWKTKCSK   53 (326)
Q Consensus         7 ~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~-vLWRe~C~~   53 (326)
                      ..||+||+.+||+.|  ||++++++++|||+|+.++.. .+||..|.+
T Consensus         2 ~~LP~Eil~~If~~L--~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~r   47 (47)
T PF12937_consen    2 SSLPDEILLEIFSYL--DPRDLLRLSLVCRRWRRIANDNSLWRRLCLR   47 (47)
T ss_dssp             CCS-HHHHHHHHTTS---HHHHHHHTTSSHHHHHHHTCCCHHHHHC--
T ss_pred             hHhHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHCChhhhhhhccC
Confidence            579999999999999  599999999999999999976 999999864

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=98.86  E-value=1.4e-09  Score=105.89  Aligned_cols=74  Identities=24%  Similarity=0.363  Sum_probs=64.5

Q ss_pred             cccccHHHHHHHHHhcC---CChHHHHHHhhchHhHHHHHHH-HhhhHHHhhhhhHHHHhhcCCC-CCCCCCchhhhhh
Q 043421            6 FSKLSDDVVLNIFFKLE---DDPRNWARLACVCVKFSSLVRN-ICWKTKCSKSIPAVVADLISPN-SGVPPGGWSSLHK   79 (326)
Q Consensus         6 ~~~LsEDVLllIF~rLn---~dPr~LaraACVCRkfr~lar~-vLWRe~C~~raP~Mv~dL~~~~-s~~~~GsW~AL~K   79 (326)
                      ++.||||||+.||+.+=   -|-|.|.++|||||.|...+|+ .+||.+|++.|++|+-.|-..- .+.+.++|+.|--
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl  185 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFL  185 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHh
Confidence            38999999999999985   1339999999999999999999 9999999999999888877532 4889999997753

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=1e-08  Score=100.25  Aligned_cols=204  Identities=18%  Similarity=0.213  Sum_probs=150.0

Q ss_pred             HHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHHHhhhHHHhhhhhHHHHhhcCC-CCCCCCCchhhhhhhhcccCCccc
Q 043421           11 DDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVADLISP-NSGVPPGGWSSLHKLSVCCPGLLH   89 (326)
Q Consensus        11 EDVLllIF~rLn~dPr~LaraACVCRkfr~lar~vLWRe~C~~raP~Mv~dL~~~-~s~~~~GsW~AL~KL~vcCpG~~~   89 (326)
                      +.++...+.+..|+-.-...++=.-.++...++...|+..|+.+.|+|+..+..- +..+.++.|...+++++.|+|-- 
T Consensus        37 ~k~~~~~d~~~~~~~~~~~~I~~l~~~~~~~~~~~~~~~~~v~~v~gvv~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-  115 (355)
T KOG1571|consen   37 EKVLVLVDLKSSWDIAPEKKIPYLVIRGCAIARKETLRSLCVSNVPGVVQALTLEEPKGRRDGGGHWNANSKIFHEGGN-  115 (355)
T ss_pred             cceecchhhhhhhhhccccchHHHHHhhcccccccchHHhhcccCCceEEEeeeccceeeeccceeeccceeeccCCCc-
Confidence            3444556666666655555666666777788888999999999999999988753 24666789999999999999873 


Q ss_pred             cCccccccccccccccCCCCCCCCCCcCCCCCCCCCcccccccCCCCCcCCCcccccccccccccccCCCCCCCCCCCCC
Q 043421           90 AGVLLENSDFGLERELGPDSDYQSCSTSAIQPTSTTTTAEACSSNLNSVTDCSWSLFDDLYYDTVYDKSESHDDDGGGDG  169 (326)
Q Consensus        90 agvl~e~~dfgle~~lgpd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsl~ddly~dt~y~~~~~~~~~~~~~~  169 (326)
                            ...|          ...+|+                                                      
T Consensus       116 ------~~~~----------~l~~q~------------------------------------------------------  125 (355)
T KOG1571|consen  116 ------EVPF----------FLRSQT------------------------------------------------------  125 (355)
T ss_pred             ------ccce----------eeccCC------------------------------------------------------
Confidence                  3333          000000                                                      


Q ss_pred             cccccccccccccccccchhhhhhccccccccccccceeehhccccccccccCCceEEeeCCCCccccc--ccccceeee
Q 043421          170 SLVVEDVDKCEVKVGGESAKKRKICRSFRSHLASGVWNLCREQGNKLLASRFRGDCLYICDWPGCLHTE--EKRNYMLFR  247 (326)
Q Consensus       170 ~~~~~G~~~~~~~~~~~~~k~r~~~~~~~~Hlasgsw~~SReqG~klLa~rfR~D~LYvcDwPgC~H~e--e~r~y~lFR  247 (326)
                           +..+|+  +                       ++|+++|.-+|+-+.++|.+|-+|  ||+|..  -....++++
T Consensus       126 -----~~~~~~--~-----------------------~~s~~~~~~~l~l~~~~d~f~~s~--p~s~~~~~~~~~sg~~~  173 (355)
T KOG1571|consen  126 -----TGFACE--V-----------------------RVSKTLGRLFLPLNVVYDLFEPSD--PCSLVDVGGGYHSGVRR  173 (355)
T ss_pred             -----cceeee--e-----------------------eeecceeeeeecceeeeccccccC--cceeeecccccccceee
Confidence                 111222  2                       889999999999999999999999  999996  556779999


Q ss_pred             eccccchhhhhHHHHhc-CCCCCCccccCCCCccccch-hhhhhh-----hhhhhcccCCCCceEEEEEeecCceeeeee
Q 043421          248 GIFKNFKRSRVWRTIND-GNRSKIDVNCAFCNCKETWD-LHSAFC-----LRRVFGYHDDGEPVVRAYVCENGHVSGAWT  320 (326)
Q Consensus       248 GVFk~F~rSrvrr~l~d-~~r~~~~~~C~fC~~~~~Wd-l~sAfc-----lrr~~gyhddGEpvvrayVCeNGHv~Gawt  320 (326)
                      |.|+.++++.-   +-. .++....+.|.||+-+ +|+ |..++-     +.++..=..|    ..-++|.|+|++|.++
T Consensus       174 ~~~~~~~~~l~---~~~~~t~l~e~v~d~~~~~r-~~~~~~g~~~v~~s~~d~LIsr~g~----~s~~~kv~~~~~~~~~  245 (355)
T KOG1571|consen  174 GGFRETERVLP---LGTRLTALGELVRDGYCGVR-VQPPMQGPLYVTKSAADRLISREGD----LSFFVKVNGMVFGTLG  245 (355)
T ss_pred             ecccceEEeec---cccceeeeehheecCCCceE-ecCCccCcceeeccchhhHHHhhcc----ceeeeeecceeeeeee
Confidence            99999998765   322 5566777999999997 999 543322     3333333233    6789999999999999


Q ss_pred             cccCC
Q 043421          321 DLPLY  325 (326)
Q Consensus       321 ~~PLy  325 (326)
                      .++|+
T Consensus       246 ~ills  250 (355)
T KOG1571|consen  246 VILLS  250 (355)
T ss_pred             EEeeh
Confidence            99886

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.40  E-value=2.6e-07  Score=63.41  Aligned_cols=44  Identities=32%  Similarity=0.576  Sum_probs=38.4

Q ss_pred             cccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHH-HhhhHHH
Q 043421            6 FSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRN-ICWKTKC   51 (326)
Q Consensus         6 ~~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~-vLWRe~C   51 (326)
                      +..||+|++.+||.+|+  +.+++++++|||+|+.++++ .+|+..|
T Consensus         3 ~~~LP~~il~~Il~~l~--~~~~~~l~~vsk~~~~~~~~~~~~~~~~   47 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLD--PKDLLRLSLVSKRWRSLVDSPRLWKKII   47 (48)
T ss_dssp             HHHS-HHHHHHHHHTS---HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCc--HHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence            56799999999999997  99999999999999999998 8998876

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.36  E-value=3.9e-07  Score=59.65  Aligned_cols=39  Identities=31%  Similarity=0.552  Sum_probs=36.5

Q ss_pred             ccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHH-HhhhH
Q 043421            9 LSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRN-ICWKT   49 (326)
Q Consensus         9 LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~-vLWRe   49 (326)
                      ||+|++.+||.+|+  |.+++++++|||+|+.+++. .+|++
T Consensus         1 lP~~ll~~I~~~l~--~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLP--PKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            79999999999996  99999999999999999988 88875

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=91.28  E-value=0.15  Score=51.34  Aligned_cols=42  Identities=29%  Similarity=0.621  Sum_probs=38.5

Q ss_pred             cccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHH-HhhhH
Q 043421            6 FSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRN-ICWKT   49 (326)
Q Consensus         6 ~~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~-vLWRe   49 (326)
                      +..|||||++.||+-|-  -.+|=+++-||+||--+++. .+|-.
T Consensus        98 ~~slpDEill~IFs~L~--kk~LL~~~~VC~Rfyr~~~de~lW~~  140 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLC--KKELLKVSGVCKRFYRLASDESLWQT  140 (419)
T ss_pred             cccCCHHHHHHHHHhcc--HHHHHHHHHHHHHHhhccccccceee
Confidence            56899999999999997  78999999999999999998 89964

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=82.40  E-value=1.3  Score=44.40  Aligned_cols=38  Identities=21%  Similarity=0.334  Sum_probs=33.0

Q ss_pred             cccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHH
Q 043421            6 FSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRN   44 (326)
Q Consensus         6 ~~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~   44 (326)
                      -+.||+|+|.+|..+|. ..-++.|...|||-||+.+..
T Consensus         4 Ws~Lp~dll~~i~~~l~-~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLF-SNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCC-cHHHHHHHHhhhhhHHHhccc
Confidence            46799999999999995 466999999999999976653

>PF11672 DUF3268: Protein of unknown function (DUF3268); InterPro: IPR021686 This entry is represented by Listeria phage P100, Gp150

Probab=80.51  E-value=1  Score=38.03  Aligned_cols=38  Identities=24%  Similarity=0.667  Sum_probs=26.3

Q ss_pred             cccCCCCccccchhhhhhhhhhhhcccCCCCceEEEEEeecCceeeee
Q 043421          272 VNCAFCNCKETWDLHSAFCLRRVFGYHDDGEPVVRAYVCENGHVSGAW  319 (326)
Q Consensus       272 ~~C~fC~~~~~Wdl~sAfclrr~~gyhddGEpvvrayVCeNGHv~Gaw  319 (326)
                      +.||||+.+-..  .++   ...+|+..|..|.+  |+|.+   .+||
T Consensus         3 ~~CpYCg~~~~l--~~~---~~iYg~~~~~~~~~--y~C~~---C~Ay   40 (102)
T PF11672_consen    3 IICPYCGGPAEL--VDG---SEIYGHRYDDGPYL--YVCTP---CDAY   40 (102)
T ss_pred             cccCCCCCeeEE--ccc---chhcCccCCCCcee--EECCC---CCce
Confidence            689999997332  332   46788765555755  99998   5655

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	326
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.72
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.48
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.37
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.3
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.19
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.13
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.03
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.9
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	94.9
1twf_I	122	B12.6, DNA-directed RNA polymerase II 14.2 kDa pol	85.9

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.72  E-value=5.5e-09  Score=72.61  Aligned_cols=45  Identities=24%  Similarity=0.475  Sum_probs=38.4

Q ss_pred             cccccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHH-HhhhHH
Q 043421            4 TLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRN-ICWKTK   50 (326)
Q Consensus         4 ~~~~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~-vLWRe~   50 (326)
                      ..+..||+|||..||++|.  |++++++++|||+|+.++.. .+||.+
T Consensus         7 ~~~~~LP~eil~~I~~~L~--~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            7 VSWDSLPDELLLGIFSCLC--LPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             --CCSSCHHHHHHHHTTSC--GGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CCHHHCCHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            4578999999999999996  99999999999999999998 899863

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.48  E-value=9.4e-08  Score=89.47  Aligned_cols=81  Identities=21%  Similarity=0.424  Sum_probs=60.6

Q ss_pred             cccccccHHHHHHHHHhcCCChHHHH-HHhhchHhHHHHHHH-HhhhHHHhhhhhHHHHhhcCCCCCCCCCchhhhhhhh
Q 043421            4 TLFSKLSDDVVLNIFFKLEDDPRNWA-RLACVCVKFSSLVRN-ICWKTKCSKSIPAVVADLISPNSGVPPGGWSSLHKLS   81 (326)
Q Consensus         4 ~~~~~LsEDVLllIF~rLn~dPr~La-raACVCRkfr~lar~-vLWRe~C~~raP~Mv~dL~~~~s~~~~GsW~AL~KL~   81 (326)
                      .....||||||.+||.+|.  |++|+ +++||||+|++|+.. .+||..|...  +.....   .......+|+.+....
T Consensus        49 ~~~~~LP~ell~~Il~~Lp--~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~---~~~~~~~~Wk~~y~~~  121 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELP--ATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEG---SADEERDHWQQFYFLS  121 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSC--HHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC--------CCSCHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCC--HHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--Cccccc---ccCCCCCChhhhhehe
Confidence            4578999999999999995  99999 999999999999998 9999999887  111111   1122567799998664


Q ss_pred             cccCCccccCcccccc
Q 043421           82 VCCPGLLHAGVLLENS   97 (326)
Q Consensus        82 vcCpG~~~agvl~e~~   97 (326)
                            .++..||.|.
T Consensus       122 ------~~gRNLL~NP  131 (297)
T 2e31_A          122 ------KRRRNLLRNP  131 (297)
T ss_dssp             ------HHCCCCSSCS
T ss_pred             ------ecccceeecC
Confidence                  3444555554

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.37  E-value=1.7e-07  Score=89.21  Aligned_cols=51  Identities=25%  Similarity=0.449  Sum_probs=47.1

Q ss_pred             cccccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHH-HhhhHHHhhhhh
Q 043421            4 TLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRN-ICWKTKCSKSIP   56 (326)
Q Consensus         4 ~~~~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~-vLWRe~C~~raP   56 (326)
                      ..+..||+||++.||+.|+  |++||++++|||+|+.++.. .|||.+|.+-+|
T Consensus         3 ~~l~~LP~ei~l~IlsfL~--p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~   54 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFLS--PHDLCQLGSTNHYWNETVRDPILWRYFLLRDLP   54 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTSC--HHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGG
T ss_pred             chhHhCCHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhccchHHHHHHhccCC
Confidence            3477899999999999997  99999999999999999999 999999997644

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.30  E-value=3.8e-07  Score=81.29  Aligned_cols=51  Identities=16%  Similarity=0.387  Sum_probs=47.0

Q ss_pred             cccccccHH----HHHHHHHhcCCChHHHHHHhhchHhHHHHHHH-HhhhHHHhhhhh
Q 043421            4 TLFSKLSDD----VVLNIFFKLEDDPRNWARLACVCVKFSSLVRN-ICWKTKCSKSIP   56 (326)
Q Consensus         4 ~~~~~LsED----VLllIF~rLn~dPr~LaraACVCRkfr~lar~-vLWRe~C~~raP   56 (326)
                      .+++.||+|    |++.||+.|.  |++|+++++|||+|+.++.. .+||.+|.+.++
T Consensus         9 d~~~~lp~e~~~~~~~~i~~~l~--~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~   64 (435)
T 1p22_A            9 DFITALPARGLDHIAENILSYLD--AKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR   64 (435)
T ss_dssp             CHHHHTGGGTCHHHHHHHHTTCC--HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             ChHHHCCcchHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence            457889999    9999999995  99999999999999999999 999999998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.19  E-value=7.9e-07  Score=78.63  Aligned_cols=49  Identities=20%  Similarity=0.314  Sum_probs=44.3

Q ss_pred             cccccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHH--HhhhHHHhhh
Q 043421            4 TLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRN--ICWKTKCSKS   54 (326)
Q Consensus         4 ~~~~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~--vLWRe~C~~r   54 (326)
                      .++..||+|||+.||+.|  ||++|+++++|||+|+.++..  .+||.+|.+.
T Consensus        13 d~~~~lp~~~~~~i~~~l--~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~   63 (464)
T 3v7d_B           13 DLITSLPFEISLKIFNYL--QFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE   63 (464)
T ss_dssp             CHHHHSCHHHHHHHHTTS--CHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CChHHCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence            457889999999999999  599999999999999999985  9999999643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.13  E-value=1.4e-06  Score=77.30  Aligned_cols=50  Identities=24%  Similarity=0.522  Sum_probs=45.7

Q ss_pred             cccccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHH-HhhhHHHhhhh
Q 043421            4 TLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRN-ICWKTKCSKSI   55 (326)
Q Consensus         4 ~~~~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~-vLWRe~C~~ra   55 (326)
                      .++..||+|++..||+.|.  |++|+++++|||+|+.++.. .+||.+|.+..
T Consensus        17 d~~~~lp~e~~~~i~~~l~--~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~   67 (445)
T 2ovr_B           17 DFISLLPKELALYVLSFLE--PKDLLQAAQTCRYWRILAEDNLLWREKCKEEG   67 (445)
T ss_dssp             STTTSSCHHHHHHHHTTSC--HHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTT
T ss_pred             ChhHHCCHHHHHHHHHhCC--HHHHHHHHHHhHHHHhhcCchhHhhhheeecc
Confidence            4578999999999999995  99999999999999999988 89999997653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.03  E-value=0.00021  Score=61.78  Aligned_cols=47  Identities=23%  Similarity=0.417  Sum_probs=40.5

Q ss_pred             cccccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHH-HhhhHHHh
Q 043421            4 TLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRN-ICWKTKCS   52 (326)
Q Consensus         4 ~~~~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~-vLWRe~C~   52 (326)
                      ..+..||+|||..||++|.  ++++.+++.|||+|+.++.. .+|+..-+
T Consensus         7 ~~~~~LP~eil~~If~~L~--~~d~~~~~~vc~~W~~~~~~~~~~~~l~l   54 (336)
T 2ast_B            7 VSWDSLPDELLLGIFSCLC--LPELLKVSGVCKRWYRLASDESLWQTLDL   54 (336)
T ss_dssp             CCSSSSCHHHHHHHHTTSC--HHHHHHTTSSCHHHHHHHTCSTTSSEEEC
T ss_pred             CChhhCCHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHhcCchhheeecc
Confidence            3478999999999999996  89999999999999999875 67876433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.90  E-value=0.00065  Score=63.04  Aligned_cols=47  Identities=13%  Similarity=0.374  Sum_probs=32.8

Q ss_pred             CcccccccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHHHhhhH
Q 043421            1 MAETLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKT   49 (326)
Q Consensus         1 ~~~~~~~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~vLWRe   49 (326)
                      |.+..++.||||||..||++|. +++++.+++.|||+|+.+ ....|+.
T Consensus         1 ~~~d~~~~LPdevL~~If~~L~-~~~d~~~~s~vck~W~~~-~~~~~~~   47 (594)
T 2p1m_B            1 MQKRIALSFPEEVLEHVFSFIQ-LDKDRNSVSLVCKSWYEI-ERWCRRK   47 (594)
T ss_dssp             ---------CHHHHHHHHHTCC-CHHHHHHHHTSCHHHHHH-HHHHCCE
T ss_pred             CcccchhhCCHHHHHHHHhhcC-CchhHHHHHHHHHHHHHh-hhhhceE
Confidence            5667789999999999999995 589999999999999998 3455553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=94.90  E-value=0.012  Score=54.81  Aligned_cols=35  Identities=20%  Similarity=0.412  Sum_probs=31.8

Q ss_pred             ccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHH
Q 043421            7 SKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLV   42 (326)
Q Consensus         7 ~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~la   42 (326)
                      ..||||||..||++|. +++++.+++.|||+|+.+.
T Consensus        14 ~~LPdeil~~I~~~L~-~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           14 VATVDDVIEQVMTYIT-DPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCGGGTHHHHHTTCC-CHHHHHHHTTSCHHHHHHH
T ss_pred             CCCCHHHHHHHHHhcC-CHHHHHHHHHHhHHHHHhh
Confidence            3699999999999994 4999999999999999884

>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...

Probab=85.90  E-value=0.71  Score=37.76  Aligned_cols=99  Identities=23%  Similarity=0.454  Sum_probs=62.8

Q ss_pred             ceeehhcccccccccc--CCceEEeeCCCCcccccccccceeeeeccccchhhhhHHHH----hcCCCCCCccccCCCCc
Q 043421          206 WNLCREQGNKLLASRF--RGDCLYICDWPGCLHTEEKRNYMLFRGIFKNFKRSRVWRTI----NDGNRSKIDVNCAFCNC  279 (326)
Q Consensus       206 w~~SReqG~klLa~rf--R~D~LYvcDwPgC~H~ee~r~y~lFRGVFk~F~rSrvrr~l----~d~~r~~~~~~C~fC~~  279 (326)
                      ..|.-+-||-|..+.=  .....|.|.  -|-|.++..+-.+||=.+.. +...+...+    .|.+..+++..||-|+-
T Consensus         4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~--~C~y~~~~~~~~v~~~~~~~-~~~e~~~v~~~~~~~~t~p~t~~~Cp~C~~   80 (122)
T 1twf_I            4 FRFCRDCNNMLYPREDKENNRLLFECR--TCSYVEEAGSPLVYRHELIT-NIGETAGVVQDIGSDPTLPRSDRECPKCHS   80 (122)
T ss_dssp             CCBCSSSCCBCEEEEETTTTEEEEECS--SSSCEEECSCSEEEEEESSC-CTTSSTTCCTTGGGCTTSCCCCCCCTTTCC
T ss_pred             CCcccccCccCcccccCcCCCCEEECC--cCCCeeecCccEEEEEeecc-cccccccccccccccccccccCCCCCCCCC
Confidence            4899999999998764  346899998  99998765555566654332 111111111    23344556799999999


Q ss_pred             cccchhhhhhhhhhhhcccCCCCceEEEEEeec-Cce
Q 043421          280 KETWDLHSAFCLRRVFGYHDDGEPVVRAYVCEN-GHV  315 (326)
Q Consensus       280 ~~~Wdl~sAfclrr~~gyhddGEpvvrayVCeN-GHv  315 (326)
                      +++.=+..-  +|+     .| ||...+|+|.| ||.
T Consensus        81 ~~a~~~q~q--~rs-----ad-e~~t~fy~C~~C~~~  109 (122)
T 1twf_I           81 RENVFFQSQ--QRR-----KD-TSMVLFFVCLSCSHI  109 (122)
T ss_dssp             CCEEEEECS--SCC-----TT-CCCCEEEEETTTCCE
T ss_pred             CEEEEEEec--Ccc-----CC-CCceEEEEeCCCCCE
Confidence            865432211  111     23 78999999998 664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	326
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.12
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.8
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.65
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.63

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.6e-11  Score=92.37  Aligned_cols=75  Identities=19%  Similarity=0.341  Sum_probs=58.6

Q ss_pred             ccccccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHH-HhhhHHHhhhhhHHHHh---hcCCCCCCCCCchhhhh
Q 043421            3 ETLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRN-ICWKTKCSKSIPAVVAD---LISPNSGVPPGGWSSLH   78 (326)
Q Consensus         3 ~~~~~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~-vLWRe~C~~raP~Mv~d---L~~~~s~~~~GsW~AL~   78 (326)
                      ..+++.||+||+..||+.|  ||++|++++||||+|+.++.. .+||.+|.+.+......   .........++.|+.++
T Consensus        16 ~D~i~~LP~Eil~~Ils~L--d~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~~~~~~~~~~~WK~~Y   93 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFL--EPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAY   93 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTS--CHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhhcccCCCCCcCHHHHH
Confidence            3467899999999999999  699999999999999999998 99999998876421111   11122455677899887


Q ss_pred             h
Q 043421           79 K   79 (326)
Q Consensus        79 K   79 (326)
                      +
T Consensus        94 ~   94 (102)
T d2ovrb1          94 I   94 (102)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=9.9e-10  Score=73.42  Aligned_cols=40  Identities=25%  Similarity=0.536  Sum_probs=36.8

Q ss_pred             cccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHH-Hhh
Q 043421            6 FSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRN-ICW   47 (326)
Q Consensus         6 ~~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~-vLW   47 (326)
                      +..||+||+.+||+.|.  |++++++++|||+|+.++.+ .+|
T Consensus         1 f~~LP~eil~~If~~L~--~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLC--LPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CCSSCHHHHHHHHTTSC--GGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCcCCHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhCCcccC
Confidence            46899999999999995  99999999999999999987 666

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=8.2e-09  Score=78.19  Aligned_cols=51  Identities=20%  Similarity=0.302  Sum_probs=45.5

Q ss_pred             cccccccccHHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHH--HhhhHHHhhh
Q 043421            2 AETLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRN--ICWKTKCSKS   54 (326)
Q Consensus         2 ~~~~~~~LsEDVLllIF~rLn~dPr~LaraACVCRkfr~lar~--vLWRe~C~~r   54 (326)
                      +..+++.||+||+..||+.|  ||++|+++++|||+|+.++..  .+||..|.+.
T Consensus         2 k~D~~~~LP~Ell~~I~s~L--d~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~   54 (100)
T d1nexb1           2 KRDLITSLPFEISLKIFNYL--QFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE   54 (100)
T ss_dssp             CCCHHHHSCHHHHHHHHTTS--CHHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHT
T ss_pred             CCCchhhCCHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            34578899999999999999  599999999999999998864  7999999764

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.4e-08  Score=78.64  Aligned_cols=50  Identities=20%  Similarity=0.446  Sum_probs=44.7

Q ss_pred             cccccc----HHHHHHHHHhcCCChHHHHHHhhchHhHHHHHHH-HhhhHHHhhhhh
Q 043421            5 LFSKLS----DDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRN-ICWKTKCSKSIP   56 (326)
Q Consensus         5 ~~~~Ls----EDVLllIF~rLn~dPr~LaraACVCRkfr~lar~-vLWRe~C~~raP   56 (326)
                      +++.||    |||++.||+.|  ||++|++++||||+|+.++.+ .+||.+|.+.+.
T Consensus        10 ~i~~LP~~l~~EI~~~Ils~L--d~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~~~   64 (118)
T d1p22a1          10 FITALPARGLDHIAENILSYL--DAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR   64 (118)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTC--CHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             HHHHCCCCChHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhcc
Confidence            456666    59999999999  699999999999999999998 999999987654