Citrus Sinensis ID: 043438

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
MASFSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQPFQSCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFKENSEKLQTWRNALKAAASLSGFHSQNIR
Secondary Structure (PSIPRED)
ccccccccccccEEEcccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHcHHccccEEEEEEccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHcccEEEEEEEEcccHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
masfsrnnkkydvfvsfraedtrdnFTSHLYSALSRQNIQTFIDdqlnrgddISESLLNAMKHQPFQSCLDELEKILECKReygqivipvfyrvdpsdvrnqtgsfgiSFSKLEERFKENSEKLQTWRNALKAAASLsgfhsqnir
Flexible Loop (DISEMBL)
masfsrnnkkydvfvsfraedtrDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQPFQSCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFKENSEKLQTWRNALKAaaslsgfhsqnir
Low Complexity Region (SEG)
MASFSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQPFQSCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFKENSEKLQTWRNALKAAASLSGFHSQNIR
Disordered region (IsUnstruct)
**********YDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQPFQSCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGIS*************************************
Disordered Region (DISOPRED)
******N*KKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQPFQSCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEER*****EKLQTWRNALKAAASLSGFHSQNIR
Disordered Region (DISEMBL)
********KKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQPFQSCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFKENSEKLQTWRNALKAAASL*********
Disordered Region (DISPRO)
******NNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQPFQSCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFKENSEKLQTWRNALKAAASLSGFHSQ***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASFSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQPFQSCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFKENSEKLQTWRNALKAAASLSGFHSQNIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	146	2.2.26 [Sep-21-2011]
O82500	1095	Putative disease resistan	yes	no	0.972	0.129	0.448	1e-29
Q40392	1144	TMV resistance protein N	N/A	no	0.883	0.112	0.471	1e-28
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.904	0.101	0.422	6e-23
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.876	0.361	0.352	3e-17
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.856	0.304	0.360	4e-16
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.869	0.323	0.342	2e-13
Q9SYC9	571	Vesicle-associated protei	no	no	0.910	0.232	0.298	1e-12
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.821	0.063	0.284	2e-05
Q9FL92	1372	Probable WRKY transcripti	no	no	0.746	0.079	0.318	0.0006

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 88/156 (56%), Gaps = 14/156 (8%)

Query: 1   MASFSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNA 60
           MAS S N+ +YDVF SFR ED R+NF SHL      + I TF DD + R   I   L  A
Sbjct: 1   MASSSSNSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAA 60

Query: 61  MKHQPFQS------------CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGI 108
           ++                  CLDEL +I++CK E G  V+PVFY+VDPSD+R QTG FG+
Sbjct: 61  IRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGM 120

Query: 109 SFSKLEERFKENSEKLQTWRNALKAAASLSGFHSQN 144
           SF  LE    +  E+   WR AL  AA++ G H QN
Sbjct: 121 SF--LETCCGKTEERQHNWRRALTDAANILGDHPQN 154

Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/142 (47%), Positives = 87/142 (61%), Gaps = 13/142 (9%)

Query: 11  YDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDDISESLLNAMKHQPF--- 66
           YDVF+SFR EDTR  FTSHLY  L+ + I+TF DD+ L  G  I   L  A++   F   
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 67  ---------QSCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERF 117
                    + CL+EL KI+ECK  + Q VIP+FY VDPS VRNQ  SF  +F + E ++
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query: 118 KENSEKLQTWRNALKAAASLSG 139
           K++ E +Q WR AL  AA+L G
Sbjct: 132 KDDVEGIQRWRIALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  106 bits (264), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 63/149 (42%), Positives = 88/149 (59%), Gaps = 17/149 (11%)

Query: 5   SRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKH- 63
           S  +++YDVF SFR ED RD+F SHL   L  + I TFIDD++ R   I   LL+A+K  
Sbjct: 6   SSGSRRYDVFPSFRGEDVRDSFLSHLLKELRGKAI-TFIDDEIERSRSIGPELLSAIKES 64

Query: 64  --------QPFQS---CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSK 112
                   + + S   CL+EL +I +C     Q+VIP+F+ VD S+V+ QTG FG  F  
Sbjct: 65  RIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFGKVF-- 122

Query: 113 LEERFKENSE-KLQTWRNALKAAASLSGF 140
            EE  K  SE + Q+W+ AL A A ++G+
Sbjct: 123 -EETCKAKSEDEKQSWKQALAAVAVMAGY 150

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 74/139 (53%), Gaps = 11/139 (7%)

Query: 13  VFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDD-------ISES----LLNAM 61
           VF++FR +D R+ F S L  A+   NI  FID     G D       I ES    ++ + 
Sbjct: 16  VFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLVNLFVRIQESRVAVVIFSK 75

Query: 62  KHQPFQSCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFKENS 121
            +   + CLDEL +I +C  + G   IP+FY++ PS V    G FG +F  L+E++K + 
Sbjct: 76  DYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGGFGDTFRVLKEKYKNDP 135

Query: 122 EKLQTWRNALKAAASLSGF 140
           E+ Q W+ AL++   L G 
Sbjct: 136 ERTQKWQEALESIPKLKGL 154

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 11/136 (8%)

Query: 13  VFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRG-------DDISES----LLNAM 61
           VF++FR +D R  F S L  AL ++ I  FID+Q  RG       D I ES    ++ + 
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLISLFDTIGESKIALVIFSE 83

Query: 62  KHQPFQSCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFKENS 121
            +     C+DEL KI E   +   I+IP+FYR+D   V++ TG FG +F  L ++++   
Sbjct: 84  GYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQPEP 143

Query: 122 EKLQTWRNALKAAASL 137
           +KL  W  AL +   L
Sbjct: 144 KKLHKWTEALFSVCEL 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 13/140 (9%)

Query: 13  VFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQPF------ 66
           VF+ FR  D R +F S L  AL   NI  FID+    G +++ +LL  ++          
Sbjct: 17  VFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMA-NLLTRIEESELALVIFS 75

Query: 67  ------QSCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFKEN 120
                   CL+EL KI E K +   IVIP+FY+V PS V+   G FG +F  LE   +  
Sbjct: 76  VDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLEGKFGDNFRALERNNRHM 135

Query: 121 SEKLQTWRNALKAAASLSGF 140
               Q W+ AL++     G 
Sbjct: 136 LPITQKWKEALESIPGSIGM 155

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 11/144 (7%)

Query: 10  KYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDD-------ISESLLNAM- 61
           +Y VF++FR ++ R++F   L  A+  + I  F D+   RG +       I ES +    
Sbjct: 357 QYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLNYLFRRIEESRVAVAI 416

Query: 62  ---KHQPFQSCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFK 118
              ++     CLDEL K+ E   +   +V+PVFYR++ +  +   G+FG +   LE  ++
Sbjct: 417 FSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMGAFGDNLRNLEWEYR 476

Query: 119 ENSEKLQTWRNALKAAASLSGFHS 142
              E++Q W+ AL +  S  G  S
Sbjct: 477 SEPERIQKWKEALSSVFSNIGLTS 500

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 17/137 (12%)

Query: 7   NNKKYDVFVSF-RAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISES--LLNAMKH 63
           ++K YDV + + RA+ + ++F SHL ++L R+ I  +  ++ N  D + +   L+  +  
Sbjct: 664 SSKDYDVVIRYGRADISNEDFISHLRASLCRRGISVY--EKFNEVDALPKCRVLIIVLTS 721

Query: 64  QPFQSCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFKENSEK 123
               S    L  ILE +    ++V P+FYR+ P D         +  SK  ERF    E 
Sbjct: 722 TYVPS---NLLNILEHQHTEDRVVYPIFYRLSPYDF--------VCNSKNYERFYLQDEP 770

Query: 124 LQTWRNALKAAASLSGF 140
            + W+ ALK    + G+
Sbjct: 771 -KKWQAALKEITQMPGY 786

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 7/116 (6%)

Query: 13  VFVSFRAEDTRDNFTSHLYSALSRQNIQ-TFID--DQL-NRGDDISESLLNAMKHQPFQS 68
           V++S   E+ R +F SHL  AL R+ +   FID  D L N    + E    ++   P   
Sbjct: 8   VYISC-IEEVRYSFVSHLSKALQRKGVNDVFIDSDDSLSNESQSMVERARVSVMILPGNR 66

Query: 69  C--LDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFKENSE 122
              LD+L K+L+C++   Q+V+PV Y V  S+    +      FS +    KE S+
Sbjct: 67  TVSLDKLVKVLDCQKNKDQVVVPVLYGVRSSETEWLSALDSKGFSSVHHSRKECSD 122

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
255561496	876	TMV resistance protein N, putative [Rici	0.972	0.162	0.551	3e-41
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.945	0.122	0.546	1e-38
255564976	944	TMV resistance protein N, putative [Rici	0.938	0.145	0.543	1e-38
255555357	1094	leucine-rich repeat-containing protein,	0.945	0.126	0.566	2e-38
317106744	947	JHS03A10.2 [Jatropha curcas]	0.945	0.145	0.54	2e-37
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.938	0.093	0.530	2e-37
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.979	0.114	0.535	3e-37
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.917	0.093	0.541	4e-37
224145021	1561	tir-nbs-lrr resistance protein [Populus	0.904	0.084	0.554	8e-37
147785864	215	hypothetical protein VITISV_004838 [Viti	0.979	0.665	0.496	2e-36

>gi|255561496|ref|XP_002521758.1| TMV resistance protein N, putative [Ricinus communis] gi|223538971|gb|EEF40568.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 85/154 (55%), Positives = 109/154 (70%), Gaps = 12/154 (7%)

Query: 1   MASFSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNA 60
           MA  + + KKYDVF+SFR EDTRDNFTSHLYSAL+++ I TF+D ++ RG++IS S+  A
Sbjct: 1   MAPLATSEKKYDVFLSFRGEDTRDNFTSHLYSALNKKKIFTFMDKEIKRGEEISPSIAKA 60

Query: 61  MKHQPF------------QSCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGI 108
           +K                + CLDEL KILECK+  GQIVIPVFYRVDP  VRNQ GSF  
Sbjct: 61  IKGSKLSVIIFSEKYAFSKWCLDELTKILECKKMNGQIVIPVFYRVDPVHVRNQRGSFAC 120

Query: 109 SFSKLEERFKENSEKLQTWRNALKAAASLSGFHS 142
           +F+K EE  KE  EK+++WR+AL  A S+SG++S
Sbjct: 121 AFAKHEETLKERMEKVESWRSALNEAGSISGWNS 154

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/150 (54%), Positives = 106/150 (70%), Gaps = 12/150 (8%)

Query: 9   KKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQPF-- 66
           +KYDVF+SFR EDTR  F SHLY+AL R+ I TFID +LNRG++IS SLL A++      
Sbjct: 13  EKYDVFLSFRGEDTRVCFVSHLYAALKRKQISTFIDYKLNRGEEISPSLLKAIEDSKLSV 72

Query: 67  ----------QSCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEER 116
                     + CL+EL KILECK+  GQ+VIPVFYRVDPS VRNQTGSF  +F++ ++ 
Sbjct: 73  VVFSDNYASSKWCLEELAKILECKKVKGQMVIPVFYRVDPSHVRNQTGSFADAFARHDQL 132

Query: 117 FKENSEKLQTWRNALKAAASLSGFHSQNIR 146
            KE  EK+  WR A++ AA+LSG+ S NI+
Sbjct: 133 LKEKMEKVLNWRAAMREAANLSGWDSHNIK 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564976|ref|XP_002523481.1| TMV resistance protein N, putative [Ricinus communis] gi|223537309|gb|EEF38940.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 81/149 (54%), Positives = 103/149 (69%), Gaps = 12/149 (8%)

Query: 10  KYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQPFQS- 68
           KYDVFVSFR EDTRDNFTSHLY+AL ++ I+ F+DD+L+RG++IS +L+  ++       
Sbjct: 15  KYDVFVSFRGEDTRDNFTSHLYAALHQKQIKAFVDDKLSRGEEISAALVKVIEESMVSVI 74

Query: 69  -----------CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERF 117
                      CLDEL KILECK+  GQIV+PVFY VDPSDV  Q G FG +F + E+ F
Sbjct: 75  IFSENYAFSPWCLDELVKILECKKTVGQIVLPVFYHVDPSDVAEQKGGFGAAFIEHEKCF 134

Query: 118 KENSEKLQTWRNALKAAASLSGFHSQNIR 146
           KE  +KLQ WR AL  AA++SG+ S  IR
Sbjct: 135 KERIDKLQKWRAALTEAANISGWSSSVIR 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555357|ref|XP_002518715.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223542096|gb|EEF43640.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/150 (56%), Positives = 107/150 (71%), Gaps = 12/150 (8%)

Query: 9   KKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKH----- 63
           +KYDVF+SFR EDTR NFTSHL++AL+ + I TFIDD L RG++IS SLL A++      
Sbjct: 21  EKYDVFLSFRGEDTRYNFTSHLHAALNGKKIPTFIDDDLERGNEISPSLLKAIEESKISV 80

Query: 64  ----QPFQS---CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEER 116
               Q + S   CL+EL KILEC +  GQ+VIPVFYRVDPS VRNQTGSF   F++ EE 
Sbjct: 81  VIISQDYPSSKWCLEELVKILECMKNRGQMVIPVFYRVDPSHVRNQTGSFEDVFARHEES 140

Query: 117 FKENSEKLQTWRNALKAAASLSGFHSQNIR 146
              + EK+Q+WR ALK  A+LSG+HS + R
Sbjct: 141 LSVSKEKVQSWRAALKEVANLSGWHSTSTR 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106744|dbj|BAJ53239.1| JHS03A10.2 [Jatropha curcas]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/150 (54%), Positives = 105/150 (70%), Gaps = 12/150 (8%)

Query: 9   KKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQ---- 64
           ++YDVF+SFR EDTRD+FTSHLY+AL  + IQTFID+ L RG +IS SLL A++      
Sbjct: 8   ERYDVFLSFRGEDTRDSFTSHLYAALCDKKIQTFIDNNLVRGKEISSSLLKAIEESKISV 67

Query: 65  PFQS--------CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEER 116
           P  S        CL+EL +I++C ++ GQIVIPVFYR+ PSDVRNQTGSF  +F++ E+ 
Sbjct: 68  PILSENYASSKWCLEELAEIIKCMKKNGQIVIPVFYRIRPSDVRNQTGSFHDAFARYEKS 127

Query: 117 FKENSEKLQTWRNALKAAASLSGFHSQNIR 146
              N +K+Q WR ALK  A LSG+ S  IR
Sbjct: 128 LMVNKDKVQRWRAALKEVAGLSGWDSMAIR 157

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 79/149 (53%), Positives = 103/149 (69%), Gaps = 12/149 (8%)

Query: 10  KYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQPFQS- 68
           KYDVF+SFR +DTRDNF SHL  AL R+ I+TFIDD+L RG++I+ +LL  ++       
Sbjct: 12  KYDVFLSFRGKDTRDNFVSHLRDALCRKQIKTFIDDKLERGEEITGALLRTIEESRISVI 71

Query: 69  -----------CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERF 117
                      C+DEL KILECK+ YGQIV+PVFY VDPSDV  QTGSFG +F++LE  F
Sbjct: 72  IFSRNYASSPWCVDELVKILECKKAYGQIVLPVFYHVDPSDVDQQTGSFGNAFAELERNF 131

Query: 118 KENSEKLQTWRNALKAAASLSGFHSQNIR 146
           K+  +K+  WR  L +AA++SG+ SQ  R
Sbjct: 132 KQKMDKVPRWRADLTSAANISGWDSQVTR 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 84/157 (53%), Positives = 105/157 (66%), Gaps = 14/157 (8%)

Query: 1   MASFSR--NNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLL 58
           MAS S   + +KYDVF+SFR EDTR+NFTSHLY AL R+ I+TFIDD L RG++I+ +LL
Sbjct: 1   MASSSSVAHKRKYDVFLSFRGEDTRNNFTSHLYDALCRKKIKTFIDDGLERGEEITPALL 60

Query: 59  NAMKHQPFQS------------CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSF 106
             ++                  C+DEL KILECK   GQIV+PVFY VDPSDV  QTGSF
Sbjct: 61  KKIEESRISVVIFSKNYASSPWCVDELVKILECKETCGQIVLPVFYHVDPSDVDEQTGSF 120

Query: 107 GISFSKLEERFKENSEKLQTWRNALKAAASLSGFHSQ 143
           G +FS+LE  FK   +K+  WR  +  AAS+SG+ SQ
Sbjct: 121 GNAFSELENIFKGKMDKVPRWRADMTYAASISGWDSQ 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 79/146 (54%), Positives = 101/146 (69%), Gaps = 12/146 (8%)

Query: 10  KYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQPFQS- 68
           KYDVF+SFR +DTR+NFTSHLY AL R+ I+TFIDD+L RG +I+ +LL  ++       
Sbjct: 12  KYDVFLSFRGKDTRNNFTSHLYDALCRKKIKTFIDDRLERGGEITPALLKTIEESRISVV 71

Query: 69  -----------CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERF 117
                      C+DEL KILECK  YGQIV+PVFY V+PSDV  QTGSFG +F++LE+ F
Sbjct: 72  IFSKNYASSPWCVDELVKILECKETYGQIVLPVFYHVNPSDVDEQTGSFGNAFAELEKNF 131

Query: 118 KENSEKLQTWRNALKAAASLSGFHSQ 143
           K   +K+  WR  L  AAS+SG+ SQ
Sbjct: 132 KGKMDKVPRWRADLTNAASISGWDSQ 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145021|ref|XP_002325498.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862373|gb|EEE99879.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  158 bits (399), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 82/148 (55%), Positives = 101/148 (68%), Gaps = 16/148 (10%)

Query: 10  KYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQ----- 64
           KYDVF+SFR +DTR+NFTSHL   L RQ I+TFIDD+L RG++I+ +LL  ++       
Sbjct: 12  KYDVFLSFRGKDTRNNFTSHLCKDLRRQKIKTFIDDRLERGEEITPALLKTIEESRVSIV 71

Query: 65  ---------PFQSCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEE 115
                    P+  CLDEL KILECK  YGQIV+PVFY VDPSDV  QTGSFG +FS+LE+
Sbjct: 72  IFSENYASSPW--CLDELVKILECKETYGQIVLPVFYHVDPSDVDEQTGSFGNAFSELEK 129

Query: 116 RFKENSEKLQTWRNALKAAASLSGFHSQ 143
            FK    K+  WR  L  AAS+SG+ SQ
Sbjct: 130 NFKGKMGKVPRWRADLTYAASISGWDSQ 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785864|emb|CAN75332.1| hypothetical protein VITISV_004838 [Vitis vinifera]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/155 (49%), Positives = 101/155 (65%), Gaps = 12/155 (7%)

Query: 2   ASFSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAM 61
            S+  N +KY+VF+SFR EDTR +FT HL+ AL R  I TFIDDQL RG+ IS +LL A+
Sbjct: 60  GSYWNNPRKYEVFLSFRGEDTRKSFTDHLHEALHRCGINTFIDDQLRRGEQISSALLQAI 119

Query: 62  KHQPFQ------------SCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGIS 109
           +   F              CLDEL KILEC +  G    PVFY VDPS VR QTGS+G++
Sbjct: 120 EESRFSIIIFSEHYASSSWCLDELTKILECVKVGGHTAFPVFYNVDPSHVRKQTGSYGVA 179

Query: 110 FSKLEERFKENSEKLQTWRNALKAAASLSGFHSQN 144
           F+K E+ +++N EK+  WR AL  A+ LSG+ S++
Sbjct: 180 FTKHEKVYRDNMEKVLKWREALTVASGLSGWDSRD 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
TAIR|locus:2136108	1095	AT4G11170 [Arabidopsis thalian	0.972	0.129	0.455	3.4e-26
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.952	0.121	0.464	6e-26
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.869	0.405	0.450	8.4e-26
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.965	0.118	0.403	1.3e-22
TAIR|locus:2160472	1038	AT5G41540 [Arabidopsis thalian	0.972	0.136	0.423	1.7e-22
TAIR|locus:2098145	1240	AT3G44630 [Arabidopsis thalian	0.965	0.113	0.397	3.7e-22
TAIR|locus:2175075	1068	AT5G41750 [Arabidopsis thalian	0.917	0.125	0.418	3.8e-22
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.952	0.114	0.398	4.6e-22
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	0.972	0.115	0.435	7.6e-22
TAIR|locus:2100182	1007	AT3G44400 [Arabidopsis thalian	0.938	0.136	0.401	9.3e-22

TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 3.4e-26, P = 3.4e-26
 Identities = 71/156 (45%), Positives = 91/156 (58%)

Query:     1 MASFSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNA 60
             MAS S N+ +YDVF SFR ED R+NF SHL      + I TF DD + R   I   L  A
Sbjct:     1 MASSSSNSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAA 60

Query:    61 MKH---------QPFQS---CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGI 108
             ++          + + S   CLDEL +I++CK E G  V+PVFY+VDPSD+R QTG FG+
Sbjct:    61 IRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGM 120

Query:   109 SFSKLEERFKENSEKLQTWRNALKAAASLSGFHSQN 144
             SF  LE    +  E+   WR AL  AA++ G H QN
Sbjct:   121 SF--LETCCGKTEERQHNWRRALTDAANILGDHPQN 154

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 306 (112.8 bits), Expect = 6.0e-26, P = 6.0e-26
 Identities = 71/153 (46%), Positives = 94/153 (61%)

Query:     1 MASFSRNNK-KYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDDISESLL 58
             MAS S +++  YDVF+SFR EDTR  FTSHLY  L+ + I+TF DD+ L  G  I   L 
Sbjct:     1 MASSSSSSRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELC 60

Query:    59 NAMKHQPF------------QSCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSF 106
              A++   F            + CL+EL KI+ECK  + Q VIP+FY VDPS VRNQ  SF
Sbjct:    61 KAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESF 120

Query:   107 GISFSKLEERFKENSEKLQTWRNALKAAASLSG 139
               +F + E ++K++ E +Q WR AL  AA+L G
Sbjct:   121 AKAFEEHETKYKDDVEGIQRWRIALNEAANLKG 153

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 64/142 (45%), Positives = 91/142 (64%)

Query:    10 KYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESL--LNAMK----- 62
             K+DVF+SFR++DTRDNF SHL   L R+ I+TF+ D+L   +   ESL  +   K     
Sbjct:     8 KHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLKAIEVSKISVIV 67

Query:    63 -HQPFQS---CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFK 118
               + F     CLDE+  IL+CK ++GQIVIPV Y VDP D+ NQTGSFG +F+K  ++  
Sbjct:    68 FSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAFAKRRDK-- 125

Query:   119 ENSEKLQTWRNALKAAASLSGF 140
               +E+LQ W+++   A +L G+
Sbjct:   126 --AEQLQEWKDSFTEAINLPGW 145

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 63/156 (40%), Positives = 93/156 (59%)

Query:     3 SFSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMK 62
             S SRN  K+DVF SF   D R  F SH+  +  R+ I TFID+ + R   I   L  A+K
Sbjct:    91 SVSRN-WKHDVFPSFHGADVRRTFLSHIMESFRRKGIDTFIDNNIERSKSIGPELKEAIK 149

Query:    63 ---------HQPFQS---CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISF 110
                       + + S   CLDEL +I++C++  GQIV+ +FY VDP+D++ QTG FG +F
Sbjct:   150 GSKIAIVLLSRKYASSSWCLDELAEIMKCRQMVGQIVMTIFYEVDPTDIKKQTGEFGKAF 209

Query:   111 SKLEERFKENSEKLQTWRNALKAAASLSGFHSQNIR 146
             +K   R K   E+++ WR AL+  A+++G+HS + R
Sbjct:   210 TKTC-RGKPK-EQVERWRKALEDVATIAGYHSHSWR 243

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2160472 AT5G41540 [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 1.7e-22, P = 1.7e-22
 Identities = 66/156 (42%), Positives = 86/156 (55%)

Query:     1 MASFSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNA 60
             MAS S + +KY VF SF   D R  F SHL    + + I  F D ++ RG  I   L+ A
Sbjct:     1 MASSSTHVRKYHVFPSFHGSDVRRKFLSHLRFHFAIKGIVAFKDQEIERGQRIGPELVQA 60

Query:    61 M-----------KHQPFQS-CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGI 108
             +           K+ P  S CLDEL +IL+CK +  QIV+P+FY +DPSDVR Q+G FG 
Sbjct:    61 IRESRVSLVVLSKNYPSSSWCLDELVEILKCKEDQEQIVMPIFYEIDPSDVRKQSGDFGK 120

Query:   109 SFSKLEERFKENSEKLQTWRNALKAAASLSGFHSQN 144
             +F K      +  E  Q W NAL  AA++ G HS N
Sbjct:   121 AFGKT--CVGKTKEVKQRWTNALTEAANIGGEHSLN 154

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2098145 AT3G44630 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 3.7e-22, P = 3.7e-22
 Identities = 62/156 (39%), Positives = 93/156 (59%)

Query:     3 SFSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMK 62
             S SRN  K+DVF SF   D R  F SH+  +  R+ I TFID+ + R   I   L  A+K
Sbjct:    87 SVSRN-WKHDVFPSFHGADVRRTFLSHIMESFRRKGIDTFIDNNIERSKSIGPELKEAIK 145

Query:    63 ---------HQPFQS---CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISF 110
                       + + S   CLDEL +I++C++  GQIV+ +FY V+P+D++ QTG FG +F
Sbjct:   146 GSKIAIVLLSRKYASSSWCLDELAEIMKCRQMVGQIVMTIFYEVEPTDIKKQTGEFGKAF 205

Query:   111 SKLEERFKENSEKLQTWRNALKAAASLSGFHSQNIR 146
             +K   R K   E+++ WR AL+  A+++G+HS + R
Sbjct:   206 TKTC-RGKPK-EQVERWRKALEDVATIAGYHSHSWR 239

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175075 AT5G41750 [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 3.8e-22, P = 3.8e-22
 Identities = 62/148 (41%), Positives = 86/148 (58%)

Query:     9 KKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKH----- 63
             K+Y VF SF   D R  F SHL+S  + + I TF D +++RG  I   L+  ++      
Sbjct:    11 KRYQVFSSFHGPDVRKGFLSHLHSVFASKGITTFNDQKIDRGQTIGPELIQGIREARVSI 70

Query:    64 ----QPFQS---CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEER 116
                 + + S   CLDEL +IL+CK   GQIV+ VFY VDPSDV+ Q+G FG +F K  + 
Sbjct:    71 VVLSKKYASSSWCLDELVEILKCKEALGQIVMTVFYEVDPSDVKKQSGVFGEAFEKTCQG 130

Query:   117 FKENSEKLQTWRNALKAAASLSGFHSQN 144
              K    K++ WRNAL   A+++G HS N
Sbjct:   131 -KNEEVKIR-WRNALAHVATIAGEHSLN 156

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 4.6e-22, P = 4.6e-22
 Identities = 61/153 (39%), Positives = 93/153 (60%)

Query:     1 MASFSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNA 60
             M S S ++ ++DVF+SFR  DTR+NFT HL  AL  + I +FIDD+L RGD+++ +L + 
Sbjct:     1 MESSSPSSAEFDVFLSFRGFDTRNNFTGHLQKALRLRGIDSFIDDRLRRGDNLT-ALFDR 59

Query:    61 MKHQP-----FQS-------CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGI 108
             ++        F +       CL EL KILEC+    Q+V+P+FY+VD SDV  Q  SF +
Sbjct:    60 IEKSKIAIIVFSTNYANSAWCLRELVKILECRNSNQQLVVPIFYKVDKSDVEKQRNSFAV 119

Query:   109 SFSKLEERFKE-NSEKLQTWRNALKAAASLSGF 140
              F   E  F     E++ +W+ AL +A+++ G+
Sbjct:   120 PFKLPELTFPGVTPEEISSWKAALASASNILGY 152

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 7.6e-22, P = 7.6e-22
 Identities = 68/156 (43%), Positives = 90/156 (57%)

Query:     1 MASFSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNA 60
             MAS S  +  YDVF SF  ED R +F SHL   L R++I TFID+ + R   I+  LL+A
Sbjct:     1 MASSSSRSWTYDVFPSFSGEDVRKSFLSHLLKKLHRKSINTFIDNNIERSHAIAPDLLSA 60

Query:    61 MKH---------QPFQS---CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGI 108
             + +         + + S   CL+EL +I +C +E  QIVIP+FY VDPSDVR QT  FG 
Sbjct:    61 INNSMISIVVFSKKYASSTWCLNELVEIHKCYKELTQIVIPIFYEVDPSDVRKQTREFG- 119

Query:   109 SFSKLEERFKENSEKLQTWRNALKAAASLSGFHSQN 144
              F K+    K    K Q W  AL+  AS++G  S+N
Sbjct:   120 EFFKVTCVGKTEDVK-QQWIEALEEVASIAGHDSKN 154

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2100182 AT3G44400 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 9.3e-22, P = 9.3e-22
 Identities = 61/152 (40%), Positives = 89/152 (58%)

Query:     3 SFSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMK 62
             S SRN  K+DVF SF   D R  F SH+  +  R+ I TFID+ + R   I   L  A+K
Sbjct:    41 SVSRN-WKHDVFPSFHGADVRRTFLSHIKESFRRKGIDTFIDNNIERSKSIGPELKEAIK 99

Query:    63 ---------HQPFQS---CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISF 110
                       + + S   CLDEL +I++C+   GQIV+ +FY V+P+D++ QTG FG +F
Sbjct:   100 GSKIAIVLLSRKYASSSWCLDELAEIMKCREMVGQIVMTIFYEVEPTDIKKQTGEFGKAF 159

Query:   111 SKLEERFKENSEKLQTWRNALKAAASLSGFHS 142
             +K   R K   E ++ WR AL+  A+++G+HS
Sbjct:   160 TKTC-RGK-TKEHIERWRKALEDVATIAGYHS 189

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	146
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-31
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	9e-29
pfam01582	135	pfam01582, TIR, TIR domain	1e-28
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	3e-07
pfam13676	102	pfam13676, TIR_2, TIR domain	2e-04

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  118 bits (296), Expect = 1e-31
 Identities = 62/155 (40%), Positives = 83/155 (53%), Gaps = 14/155 (9%)

Query: 2   ASFSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAM 61
           +S S  N  YDVF SF  ED R  F SH    L R+ I  F D+++ R   +   L  A+
Sbjct: 4   SSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAI 63

Query: 62  KHQ-----------PFQS-CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGIS 109
           +                S CL+EL +I+ CK E GQ+VIPVFY +DPS VR QTG FG +
Sbjct: 64  RDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEA 123

Query: 110 FSKLEERFKENSEKLQTWRNALKAAASLSGFHSQN 144
           F K  +   E+ +    W+ AL   A++ G+HSQN
Sbjct: 124 FEKTCQNKTEDEKIQ--WKQALTDVANILGYHSQN 156

syringae 6; Provisional. Length = 1153

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  102 bits (255), Expect = 9e-29
 Identities = 56/142 (39%), Positives = 71/142 (50%), Gaps = 16/142 (11%)

Query: 10  KYDVFVSFR-AEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKH----- 63
           +YDVF+S+   ED R+ F SHL   L    +  FIDD    G D+ E +  A++      
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAI 59

Query: 64  -----QPFQS--CLDELEKILECKREYGQI-VIPVFYRVDPSDVRNQTGSFGISFSKLEE 115
                   +S  CLDEL   LE   E G + VIP+FY V PSDVR Q G F   F K   
Sbjct: 60  VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYL 119

Query: 116 RFKENSEKLQTWRNALKAAASL 137
           ++ E  EK Q W+ AL A  S 
Sbjct: 120 KWPE-DEKEQFWKKALYAVPSK 140

Length = 140

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  101 bits (255), Expect = 1e-28
 Identities = 52/135 (38%), Positives = 77/135 (57%), Gaps = 15/135 (11%)

Query: 13  VFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDD-QLNRGDDISESLLNAMKH-------- 63
           VFVSF  +D RD F SHL   L  + I+  IDD     G+ I E+L  A++         
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 64  -QPFQS---CLDELEKILECKREYG--QIVIPVFYRVDPSDVRNQTGSFGISFSKLEERF 117
              + S   CLDEL +I++C  E G  ++++P+FY+VDPSDVR Q+G FG +F K  +  
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120

Query: 118 KENSEKLQTWRNALK 132
            +  +K++ W+ AL 
Sbjct: 121 GDKEDKIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 17/102 (16%)

Query: 12  DVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDDISESLLNAMKH-----QP 65
           DVF++ R  DT+    + LY  LSR N++ F+D++ +  GD + + + +A+++       
Sbjct: 28  DVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAV 87

Query: 66  FQS-------CLDELEKILECKREYGQIVIPVFYRVDPSDVR 100
           F         CL EL  I+E K+     VIP+F  V PS +R
Sbjct: 88  FSPRYCESYFCLHELALIMESKKR----VIPIFCDVKPSQLR 125

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 20/99 (20%)

Query: 13 VFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQPF------ 66
          VF+S+ + D    +   L  AL    I+ ++D  +  G+D  + +  A++          
Sbjct: 1  VFISYASADRE--WAEWLADALEAAGIRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLS 58

Query: 67 ----QS--CLDELEKILECKREYGQIVIPVFYRVDPSDV 99
               S  C  E    LE  +     +IPV  R++  ++
Sbjct: 59 PAYLASPWCRAEWGAALERGK----RLIPV--RLEDCEL 91

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN03194	187	putative disease resistance protein; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.86
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.82
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.19
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.6
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	94.43
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	91.0

>PLN03210 Resistant to P

Probab=100.00  E-value=5.6e-48  Score=359.67  Aligned_cols=144  Identities=43%  Similarity=0.712  Sum_probs=135.6

Q ss_pred             CCCC--CCCCCcceEEeecccccccchhHHHHHHHHhcCCeeeeccCccCCCCcchHHHHHHhhhCccc-----------
Q 043438            1 MASF--SRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQPFQ-----------   67 (146)
Q Consensus         1 m~~~--s~~~~~ydVFiSfrg~Dtr~~Fv~~L~~aL~~~gi~~f~d~~~~~G~~i~~~l~~aI~~S~is-----------   67 (146)
                      ||+|  |++.++|||||||||+|||++|++||++||.++||++|+|+++++|+.|++++++||++|+++           
T Consensus         1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s   80 (1153)
T PLN03210          1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASS   80 (1153)
T ss_pred             CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccc
Confidence            5664  457889999999999999999999999999999999999988999999999999999999997           


Q ss_pred             -ccHHHHHHHHHHHhhCCcEEEeEEeeecCcccccccCchHHHHHHHHHHhccChHHHHHHHHHHHHhhcccCeeccCCC
Q 043438           68 -SCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFKENSEKLQTWRNALKAAASLSGFHSQNIR  146 (146)
Q Consensus        68 -wCl~EL~~i~~~~~~~~~~VlPVFY~V~psdVr~q~g~f~~af~~~~~~~~~~~e~v~~W~~AL~~v~~~~G~~~~~~~  146 (146)
                       ||||||++|++|+++.+++|+||||+|+|||||+|+|.||+||.+++++.  +.+++++||+||++||+++||++++|+
T Consensus        81 ~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~  158 (1153)
T PLN03210         81 SWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWP  158 (1153)
T ss_pred             hHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCC
Confidence             99999999999999999999999999999999999999999999998764  368999999999999999999998764

syringae 6; Provisional

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=3e-45  Score=280.75  Aligned_cols=126  Identities=33%  Similarity=0.550  Sum_probs=115.4

Q ss_pred             CCCCCCCCcceEEeecccccccchhHHHHHHHHhcCCeeeeccCc-cCCCCcchHHHHHHhhhCccc------------c
Q 043438            2 ASFSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ------------S   68 (146)
Q Consensus         2 ~~~s~~~~~ydVFiSfrg~Dtr~~Fv~~L~~aL~~~gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is------------w   68 (146)
                      +|+|+...+|||||||||+|||++|++||+.+|+++||+||+|+. +++|+.|.+.|.+||++|+++            |
T Consensus        18 ~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~W   97 (187)
T PLN03194         18 PSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYF   97 (187)
T ss_pred             ccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchh
Confidence            467788899999999999999999999999999999999999987 999999999999999999987            9


Q ss_pred             cHHHHHHHHHHHhhCCcEEEeEEeeecCcccccc-cCchHHHHHHHHHHhccChHHHHHHHHHHHHhhcccCeeccC
Q 043438           69 CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQ-TGSFGISFSKLEERFKENSEKLQTWRNALKAAASLSGFHSQN  144 (146)
Q Consensus        69 Cl~EL~~i~~~~~~~~~~VlPVFY~V~psdVr~q-~g~f~~af~~~~~~~~~~~e~v~~W~~AL~~v~~~~G~~~~~  144 (146)
                      ||+||++|++|.    .+||||||+|+|+|||+| .|.             .+.+++++||.||++|++++|+++..
T Consensus        98 CLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~  157 (187)
T PLN03194         98 CLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDS  157 (187)
T ss_pred             HHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCC
Confidence            999999999974    479999999999999997 442             13689999999999999999998753

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.86  E-value=5.6e-23  Score=150.59  Aligned_cols=120  Identities=30%  Similarity=0.540  Sum_probs=105.0

Q ss_pred             EEeecccccccchhHHHHHHHHhcC--CeeeeccCc-cCCCCcchHHHHHHhhhCccc------------ccHHHHHHHH
Q 043438           13 VFVSFRAEDTRDNFTSHLYSALSRQ--NIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ------------SCLDELEKIL   77 (146)
Q Consensus        13 VFiSfrg~Dtr~~Fv~~L~~aL~~~--gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is------------wCl~EL~~i~   77 (146)
                      |||||++.+.+..|+++|..+|.++  |+++|++++ +.+|..+.+++.++|++|+..            ||+.||..++
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999566789999999999999  999999887 999999999999999999976            9999999999


Q ss_pred             HHHhhCC--cEEEeEEeeecCcccc-cccCchHHHHHHHHHHhccC--hHHHHHHHHHHH
Q 043438           78 ECKREYG--QIVIPVFYRVDPSDVR-NQTGSFGISFSKLEERFKEN--SEKLQTWRNALK  132 (146)
Q Consensus        78 ~~~~~~~--~~VlPVFY~V~psdVr-~q~g~f~~af~~~~~~~~~~--~e~v~~W~~AL~  132 (146)
                      ++....+  .+|+||||+|.|++|+ .+++.|+..|..+..-...+  .++...|++++.
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            9987755  8999999999999999 79999999998887765543  578999999976

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.82  E-value=1.1e-19  Score=131.31  Aligned_cols=125  Identities=41%  Similarity=0.642  Sum_probs=104.7

Q ss_pred             cceEEeeccc-ccccchhHHHHHHHHhcCCeeeeccCccCCCCcchHHHHHHhhhCccc------------ccHHHHHHH
Q 043438           10 KYDVFVSFRA-EDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQPFQ------------SCLDELEKI   76 (146)
Q Consensus        10 ~ydVFiSfrg-~Dtr~~Fv~~L~~aL~~~gi~~f~d~~~~~G~~i~~~l~~aI~~S~is------------wCl~EL~~i   76 (146)
                      .|||||||++ +++...|+.+|..+|...|+.+|.|+....|... .++.++|++|+..            ||..|+..+
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a   79 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA   79 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence            4999999999 5677899999999999999999998763333333 3899999999875            999999999


Q ss_pred             HHHHhh-CCcEEEeEEeeecCcccccccCchHHHHHHHHHHhccChHHHHHHHHHHHHhhc
Q 043438           77 LECKRE-YGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFKENSEKLQTWRNALKAAAS  136 (146)
Q Consensus        77 ~~~~~~-~~~~VlPVFY~V~psdVr~q~g~f~~af~~~~~~~~~~~e~v~~W~~AL~~v~~  136 (146)
                      +++... ....||||+|+..|+++..+.+.++.++..+.....++..+ +.|+.++..+++
T Consensus        80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~  139 (140)
T smart00255       80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence            998755 66899999999999999999999999998886666543333 789999998764

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.19  E-value=1.4e-11  Score=84.97  Aligned_cols=75  Identities=29%  Similarity=0.499  Sum_probs=60.5

Q ss_pred             EEeecccccccchhHHHHHHHHhcCCeeeeccCccCCCCcchHHHHHHhhhCccc------------ccHHHHHHHHHHH
Q 043438           13 VFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQPFQ------------SCLDELEKILECK   80 (146)
Q Consensus        13 VFiSfrg~Dtr~~Fv~~L~~aL~~~gi~~f~d~~~~~G~~i~~~l~~aI~~S~is------------wCl~EL~~i~~~~   80 (146)
                      |||||+++|  ..++..|...|+..|+++|.|.++..|+.+...+.++|++|...            ||..|+..+.   
T Consensus         1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~---   75 (102)
T PF13676_consen    1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW---   75 (102)
T ss_dssp             EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH---
T ss_pred             eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH---
Confidence            899999999  46999999999999999999977889999988999999998764            9999998873   


Q ss_pred             hhCCcEEEeEEee
Q 043438           81 REYGQIVIPVFYR   93 (146)
Q Consensus        81 ~~~~~~VlPVFY~   93 (146)
                       ..+..|+||..+
T Consensus        76 -~~~~~iipv~~~   87 (102)
T PF13676_consen   76 -KRGKPIIPVRLD   87 (102)
T ss_dssp             -CTSESEEEEECS
T ss_pred             -HCCCEEEEEEEC
Confidence             345689999843

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.60  E-value=7e-08  Score=83.86  Aligned_cols=90  Identities=30%  Similarity=0.433  Sum_probs=74.6

Q ss_pred             CCcceEEeecccccccchhHHHHHHHHhcCCeeeeccCc-cCCCCcchHHHHHHhhhCccc-------------------
Q 043438            8 NKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ-------------------   67 (146)
Q Consensus         8 ~~~ydVFiSfrg~Dtr~~Fv~~L~~aL~~~gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is-------------------   67 (146)
                      ..+.|||||||.. |.+..++.|...|+-+|.+||+|-+ +..|+- .+++++.|...+-.                   
T Consensus       610 skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~nCe  687 (832)
T KOG3678|consen  610 SKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCE  687 (832)
T ss_pred             cCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhccccHH
Confidence            4568999999875 6788999999999999999999987 999975 56889999988754                   


Q ss_pred             -ccHHHHHHHHHHHhhCCcEEEeEEee---------ecCccccccc
Q 043438           68 -SCLDELEKILECKREYGQIVIPVFYR---------VDPSDVRNQT  103 (146)
Q Consensus        68 -wCl~EL~~i~~~~~~~~~~VlPVFY~---------V~psdVr~q~  103 (146)
                       |...||+..++|.+    .|+|||=.         +-|.|+|.-+
T Consensus       688 DWVHKEl~~Afe~~K----NIiPI~D~aFE~Pt~ed~iPnDirmi~  729 (832)
T KOG3678|consen  688 DWVHKELKCAFEHQK----NIIPIFDTAFEFPTKEDQIPNDIRMIT  729 (832)
T ss_pred             HHHHHHHHHHHHhcC----CeeeeecccccCCCchhcCcHHHHHHH
Confidence             88999999888865    69999953         6677776543

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=94.43  E-value=0.064  Score=38.52  Aligned_cols=76  Identities=24%  Similarity=0.388  Sum_probs=35.9

Q ss_pred             ceEEeecccccccchhHHHHHHHHhcC-------Ceee-eccC---c-c------CCCCcchHHHHHHhhhCccc-----
Q 043438           11 YDVFVSFRAEDTRDNFTSHLYSALSRQ-------NIQT-FIDD---Q-L------NRGDDISESLLNAMKHQPFQ-----   67 (146)
Q Consensus        11 ydVFiSfrg~Dtr~~Fv~~L~~aL~~~-------gi~~-f~d~---~-~------~~G~~i~~~l~~aI~~S~is-----   67 (146)
                      |.|||||...|-. .....|..-+...       .+.. |.+.   + +      ...+.|...|.++|..|.+.     
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            5799999988743 3556666666552       2211 1111   1 1      12335777888889988864     


Q ss_pred             -------ccHHHHHHHHHHHhhCCcEEEeEE
Q 043438           68 -------SCLDELEKILECKREYGQIVIPVF   91 (146)
Q Consensus        68 -------wCl~EL~~i~~~~~~~~~~VlPVF   91 (146)
                             |+-.|+...++    .+..||-|-
T Consensus        80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~  106 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALK----KGKPIIGVY  106 (130)
T ss_dssp             TT----HHHHHHHHHHTT----T---EEEEE
T ss_pred             CCcccCcHHHHHHHHHHH----CCCCEEEEE
Confidence                   99999998776    344566664

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=91.00  E-value=1.3  Score=32.06  Aligned_cols=54  Identities=17%  Similarity=0.321  Sum_probs=36.5

Q ss_pred             eEEeecccccc-cchhHHHHHHHHhcC-CeeeeccCc-cCC--CCcchHHHHHHhhhCc
Q 043438           12 DVFVSFRAEDT-RDNFTSHLYSALSRQ-NIQTFIDDQ-LNR--GDDISESLLNAMKHQP   65 (146)
Q Consensus        12 dVFiSfrg~Dt-r~~Fv~~L~~aL~~~-gi~~f~d~~-~~~--G~~i~~~l~~aI~~S~   65 (146)
                      -|||||+.+.- ...-|-.|...|++. ||.|.+|.- ...  +.....=+.+.|+++.
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad   60 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREAD   60 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCC
Confidence            59999987432 346689999999999 999999864 322  3333344455565543

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	146
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		1e-22
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		6e-21

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 87/146 (59%), Gaps = 16/146 (10%)
Query: 10  KYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTF-IDDQLNRGDDISESLLNAMK----HQ 64
           +Y+VF+SFR  DTR+ FT  LY +L R  I TF  DD+L +G +I  +LL A+     + 
Sbjct: 35  EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 65  PFQS--------CLDELEKILECKREYG-QIVIPVFYRVDPSDVRNQTGSFGISFSKLEE 115
           P  S        CL EL +I+  + E   +I++P+FY VDPSDVR+QTG +  +F K   
Sbjct: 95  PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 116 RFKENSEKLQTWRNALKAAASLSGFH 141
           +F  + + +Q W++ALK    L G+H
Sbjct: 155 KF--DGQTIQNWKDALKKVGDLKGWH 178

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score = 96.3 bits (238), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 60/148 (40%), Positives = 79/148 (53%), Gaps = 15/148 (10%)
Query: 5   SRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDD-QLNRGDDISESLLNAMKH 63
           S    KYDVF+SFR  DTR NF S LY  L R++I+TF DD +L  G   S  L + ++ 
Sbjct: 3   SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEV 62
Query: 64  QPFQS------------CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFS 111
             F              CLDEL  I++ +++    V+P+FY V+P+ VR QTG     F 
Sbjct: 63  SRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFK 122
Query: 112 KLEERFKENSEKLQTWRNALKAAASLSG 139
           K   R  E+ EK+  WR AL   A LSG
Sbjct: 123 KHASR--EDPEKVLKWRQALTNFAQLSG 148

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	146
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	4e-71
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	3e-68
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	5e-53
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	1e-08

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  210 bits (537), Expect = 4e-71
 Identities = 61/161 (37%), Positives = 83/161 (51%), Gaps = 25/161 (15%)

Query: 1   MASFSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDDISESLLN 59
           M+S +    KYDVF+SFR  DTR NF S LY  L R++I+TF DD+ L  G   S  L +
Sbjct: 1   MSSHT--ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKS 58

Query: 60  AMKHQPFQS----------------CLDELEKILECKREYGQIVIPVFYRVDPSDVRNQT 103
            ++     S                CLDEL  I++ +++    V+P+FY V+P+ VR QT
Sbjct: 59  PIE----VSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQT 114

Query: 104 GSFGISFSKLEERFKENSEKLQTWRNALKAAASLSGFHSQN 144
           G     F K   R   + EK+  WR AL   A LSG  S +
Sbjct: 115 GVLAEQFKKHASRE--DPEKVLKWRQALTNFAQLSGDCSGD 153

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  204 bits (520), Expect = 3e-68
 Identities = 61/162 (37%), Positives = 88/162 (54%), Gaps = 24/162 (14%)

Query: 3   SFSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDDISESLLNAM 61
           S S  + +Y+VF+SFR  DTR+ FT  LY +L R  I TF DD  L +G +I  +LL A+
Sbjct: 28  SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAI 87

Query: 62  KHQPFQS----------------CLDELEKILECKREYG-QIVIPVFYRVDPSDVRNQTG 104
                QS                CL EL +I+  + E   +I++P+FY VDPSDVR+QTG
Sbjct: 88  D----QSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTG 143

Query: 105 SFGISFSKLEERFKENSEKLQTWRNALKAAASLSGFHSQNIR 146
            +  +F K   +F  + + +Q W++ALK    L G+H     
Sbjct: 144 CYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKND 183

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  163 bits (415), Expect = 5e-53
 Identities = 21/144 (14%), Positives = 54/144 (37%), Gaps = 16/144 (11%)

Query: 1   MASFSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDDISESLLN 59
             +   +   +D+F+S   ED + +F   L   L     + + DD  L  GD +  S+  
Sbjct: 11  TNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDK 69

Query: 60  AMKHQPF------------QSCLDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFG 107
            +    F            +    EL+ + + +      ++P++++V   +V + + +  
Sbjct: 70  GLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMA 129

Query: 108 ISFSKLEERFKENSEKLQTWRNAL 131
              +        + +++     A+
Sbjct: 130 DKLAFNTSTK--SVDEIVADLMAI 151

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 24/148 (16%)

Query: 3   SFSRNNKKYDVFVSFRAEDTRDNFTSHLYSAL--SRQNIQTFIDDQ-LNRGDDISESLLN 59
             SR +K YDV V    ED        L S L  S  +++ F+  +    G  I   L  
Sbjct: 3   GSSRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQ 60

Query: 60  AMKH---------QPF-QS--CLDELEKILECKREYGQIVIPVFYRVD----PSDVRNQT 103
           A+             F Q   C  ++ + L          IP+   +     P ++R   
Sbjct: 61  ALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMY 120

Query: 104 GSFGISFSKLEERFKENSEKLQTWRNAL 131
               +     +  F++  E +  +   L
Sbjct: 121 ---YVDGRGPDGGFRQVKEAVMRYLQTL 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	146
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.97
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.88
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.75
2js7_A	160	Myeloid differentiation primary response protein M	99.73
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.73
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.72
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.23
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	90.26
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	80.95

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=4.1e-54  Score=328.02  Aligned_cols=139  Identities=44%  Similarity=0.696  Sum_probs=115.8

Q ss_pred             CCCCCCCcceEEeecccccccchhHHHHHHHHhcCCeeeeccCc-cCCCCcchHHHHHHhhhCccc------------cc
Q 043438            3 SFSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ------------SC   69 (146)
Q Consensus         3 ~~s~~~~~ydVFiSfrg~Dtr~~Fv~~L~~aL~~~gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is------------wC   69 (146)
                      |+|+..++|||||||||+|+|++|++||+++|.++||++|+|++ +++|+.|.++|.+||++|+++            ||
T Consensus         1 msss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WC   80 (176)
T 3jrn_A            1 MSSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWC   80 (176)
T ss_dssp             ------CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHH
T ss_pred             CCCCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhH
Confidence            45667899999999999999999999999999999999999977 999999999999999999987            99


Q ss_pred             HHHHHHHHHHHhhCCcEEEeEEeeecCcccccccCchHHHHHHHHHHhccChHHHHHHHHHHHHhhcccCeecc
Q 043438           70 LDELEKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFKENSEKLQTWRNALKAAASLSGFHSQ  143 (146)
Q Consensus        70 l~EL~~i~~~~~~~~~~VlPVFY~V~psdVr~q~g~f~~af~~~~~~~~~~~e~v~~W~~AL~~v~~~~G~~~~  143 (146)
                      |+||++|++|++..+++||||||+|+|||||+|+|.||+||.+|+++  .+.+++++||.||++||+++||++.
T Consensus        81 l~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~  152 (176)
T 3jrn_A           81 LDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG  152 (176)
T ss_dssp             HHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred             HHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence            99999999999999999999999999999999999999999999987  4689999999999999999999984

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=1.6e-53  Score=330.75  Aligned_cols=140  Identities=41%  Similarity=0.745  Sum_probs=129.8

Q ss_pred             CCCCCcceEEeecccccccchhHHHHHHHHhcCCeeeeccCc-cCCCCcchHHHHHHhhhCccc------------ccHH
Q 043438            5 SRNNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ------------SCLD   71 (146)
Q Consensus         5 s~~~~~ydVFiSfrg~Dtr~~Fv~~L~~aL~~~gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is------------wCl~   71 (146)
                      +.|.++|||||||||+|+|.+|++||+.+|.++||++|+|++ +++|+.|.++|++||++|+++            |||+
T Consensus        30 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~  109 (204)
T 3ozi_A           30 SFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM  109 (204)
T ss_dssp             ----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred             CCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence            456889999999999999999999999999999999999977 999999999999999999987            9999


Q ss_pred             HHHHHHHHHhh-CCcEEEeEEeeecCcccccccCchHHHHHHHHHHhccChHHHHHHHHHHHHhhcccCeeccCCC
Q 043438           72 ELEKILECKRE-YGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFKENSEKLQTWRNALKAAASLSGFHSQNIR  146 (146)
Q Consensus        72 EL~~i~~~~~~-~~~~VlPVFY~V~psdVr~q~g~f~~af~~~~~~~~~~~e~v~~W~~AL~~v~~~~G~~~~~~~  146 (146)
                      ||++|++|+++ .+++||||||+|+|++||+|+|.||+||.+|++++.  .+++++||.||++||+++||++++++
T Consensus       110 EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~~  183 (204)
T 3ozi_A          110 ELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKND  183 (204)
T ss_dssp             HHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTTS
T ss_pred             HHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCCC
Confidence            99999999875 689999999999999999999999999999999874  68999999999999999999998763

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.97  E-value=3.4e-32  Score=201.78  Aligned_cols=122  Identities=18%  Similarity=0.288  Sum_probs=106.0

Q ss_pred             CCCcceEEeecccccccchhHHHHHHHHhcCCeeeeccCc-cCCCCcchHHHHHHhhhCccc------------ccHHHH
Q 043438            7 NNKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ------------SCLDEL   73 (146)
Q Consensus         7 ~~~~ydVFiSfrg~Dtr~~Fv~~L~~aL~~~gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is------------wCl~EL   73 (146)
                      +.++|||||||+++| +..|+.+|+.+|+++||++|+|+. +.+|+.+.++|.++|++|++.            ||++||
T Consensus        17 ~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El   95 (154)
T 3h16_A           17 SAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKEL   95 (154)
T ss_dssp             -CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHH
T ss_pred             CCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHH
Confidence            468899999999999 678999999999999999999987 999999999999999999986            999999


Q ss_pred             HHHHHHHhhCCcEEEeEEeeecCcccccccCchHHHHHHHHHHhccChHHHHHHHHHHHHh
Q 043438           74 EKILECKREYGQIVIPVFYRVDPSDVRNQTGSFGISFSKLEERFKENSEKLQTWRNALKAA  134 (146)
Q Consensus        74 ~~i~~~~~~~~~~VlPVFY~V~psdVr~q~g~f~~af~~~~~~~~~~~e~v~~W~~AL~~v  134 (146)
                      .++++|....++.||||||+|+|++||+|+|.||++|......     ..+.++-+.|.++
T Consensus        96 ~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~-----~~~~~ia~~l~~l  151 (154)
T 3h16_A           96 DGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTST-----KSVDEIVADLMAI  151 (154)
T ss_dssp             HHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTT-----SCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCc-----ccHHHHHHHHHHH
Confidence            9999998888889999999999999999999999988654432     3345555555543

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.88  E-value=2.2e-23  Score=153.78  Aligned_cols=119  Identities=21%  Similarity=0.247  Sum_probs=82.1

Q ss_pred             CCCCCCcceEEeecccccccchhHHHHHHHHhc--CCeeeeccCc-cCCCCcchHHHHHHhhhCccc------------c
Q 043438            4 FSRNNKKYDVFVSFRAEDTRDNFTSHLYSALSR--QNIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ------------S   68 (146)
Q Consensus         4 ~s~~~~~ydVFiSfrg~Dtr~~Fv~~L~~aL~~--~gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is------------w   68 (146)
                      |+...+.|||||||+++|++  |+.+|+.+|++  .|+++|+++. +.+|+.+.+++.++|++|+..            |
T Consensus         4 ~~r~~k~YDvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w   81 (146)
T 3ub2_A            4 SSRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW   81 (146)
T ss_dssp             CCTTSSSEEEEEECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred             CCCCCCcceEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence            44567789999999999974  79999999998  5999999887 999999999999999999975            9


Q ss_pred             cHHHHHHHHHHHhhCCcEEEeEEeeecC----cccccccCc----hHHHHHHHHHHhccChHHHHHHHHHH
Q 043438           69 CLDELEKILECKREYGQIVIPVFYRVDP----SDVRNQTGS----FGISFSKLEERFKENSEKLQTWRNAL  131 (146)
Q Consensus        69 Cl~EL~~i~~~~~~~~~~VlPVFY~V~p----sdVr~q~g~----f~~af~~~~~~~~~~~e~v~~W~~AL  131 (146)
                      |+.||..++.|.......||||||+|++    ..++.....    ....|.+.       .+.|.+|+.||
T Consensus        82 c~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-------~~~v~~~~~~~  145 (146)
T 3ub2_A           82 CKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-------KEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-------HHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-------HHHHHHHHHhc
Confidence            9999999999863333367799999985    445665432    23444333       47789999886

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.75  E-value=1.9e-19  Score=132.79  Aligned_cols=91  Identities=15%  Similarity=0.261  Sum_probs=78.5

Q ss_pred             CCCcceEEeecccccccchhHHH-HHHHHhcC--CeeeeccCc-cCCCCcchHHHHHHhhhCccc------------ccH
Q 043438            7 NNKKYDVFVSFRAEDTRDNFTSH-LYSALSRQ--NIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ------------SCL   70 (146)
Q Consensus         7 ~~~~ydVFiSfrg~Dtr~~Fv~~-L~~aL~~~--gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is------------wCl   70 (146)
                      ..+.|||||||+++|+  .|+.+ |+.+|+++  |+++|+|+. +.+|+.+.+++.++|++|+..            ||+
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            3568999999999997  79997 99999986  999999987 999999999999999999975            999


Q ss_pred             HHHHHHHH-HHhhCCcEEEeEEee-ecCccc
Q 043438           71 DELEKILE-CKREYGQIVIPVFYR-VDPSDV   99 (146)
Q Consensus        71 ~EL~~i~~-~~~~~~~~VlPVFY~-V~psdV   99 (146)
                      .||..++. +....++.||||||+ +++..+
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~  110 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIEKKAI  110 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence            99999885 445567789999996 555444

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.73  E-value=9.2e-19  Score=130.68  Aligned_cols=88  Identities=14%  Similarity=0.246  Sum_probs=76.9

Q ss_pred             CCCcceEEeecccccccchhHHHHHHHHhcC--CeeeeccCc-cCCCCcchHHHHHHhh-hCccc------------ccH
Q 043438            7 NNKKYDVFVSFRAEDTRDNFTSHLYSALSRQ--NIQTFIDDQ-LNRGDDISESLLNAMK-HQPFQ------------SCL   70 (146)
Q Consensus         7 ~~~~ydVFiSfrg~Dtr~~Fv~~L~~aL~~~--gi~~f~d~~-~~~G~~i~~~l~~aI~-~S~is------------wCl   70 (146)
                      ..+.|||||||+++|  ..|+.+|+.+|.++  |+++|+++. +.+|+.+.+++.++|+ .|+..            ||+
T Consensus        13 ~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~   90 (160)
T 2js7_A           13 MPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD   90 (160)
T ss_dssp             CTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred             CCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence            467899999999999  58999999999984  699999887 9999999999999999 69864            999


Q ss_pred             HHHHHHHHHH-hhCCcEEEeEEeeecC
Q 043438           71 DELEKILECK-REYGQIVIPVFYRVDP   96 (146)
Q Consensus        71 ~EL~~i~~~~-~~~~~~VlPVFY~V~p   96 (146)
                      .||..++++. ...++.||||||+.-+
T Consensus        91 ~El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           91 FQTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence            9999999975 3445789999998653

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.73  E-value=1.3e-18  Score=132.03  Aligned_cols=87  Identities=17%  Similarity=0.319  Sum_probs=72.6

Q ss_pred             CCCCcceEEeecccccccchhHH-HHHHHHhc--CCeeeeccCc-cCCCCcchHHHHHHhhhCccc------------cc
Q 043438            6 RNNKKYDVFVSFRAEDTRDNFTS-HLYSALSR--QNIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ------------SC   69 (146)
Q Consensus         6 ~~~~~ydVFiSfrg~Dtr~~Fv~-~L~~aL~~--~gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is------------wC   69 (146)
                      ...+.|||||||+++|+  .|+. +|+.+|++  +|+++|+|+. +.+|+.+.+++.++|++|+..            ||
T Consensus        31 ~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc  108 (178)
T 2j67_A           31 KRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWC  108 (178)
T ss_dssp             CCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGG
T ss_pred             CCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchH
Confidence            45678999999999996  7997 59999998  8999999987 999999999999999999875            99


Q ss_pred             HHHHHHHHHHH-hhCCcEEEeEEeee
Q 043438           70 LDELEKILECK-REYGQIVIPVFYRV   94 (146)
Q Consensus        70 l~EL~~i~~~~-~~~~~~VlPVFY~V   94 (146)
                      +.||..++.+. +..++.||||||+-
T Consensus       109 ~~El~~a~~~~~~~~~~~vIpV~~~~  134 (178)
T 2j67_A          109 HYEFYFAHHNLFHENSDHIILILLEP  134 (178)
T ss_dssp             GTHHHHTTCC-------CEEEEESSC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEEecC
Confidence            99999999653 45677899999973

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.72  E-value=5.8e-18  Score=126.22  Aligned_cols=89  Identities=20%  Similarity=0.211  Sum_probs=77.2

Q ss_pred             CcceEEeecccccc---------cchhHHHHHH-HHh-cCCeeeeccCc-cCCCCcchHHHHHHhhhCccc---------
Q 043438            9 KKYDVFVSFRAEDT---------RDNFTSHLYS-ALS-RQNIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ---------   67 (146)
Q Consensus         9 ~~ydVFiSfrg~Dt---------r~~Fv~~L~~-aL~-~~gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is---------   67 (146)
                      +.|||||||+++|+         +..||.+|.. .|+ +.|+++|+++. +.+|+.+.+++.++|++|+..         
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            46999999999997         4789999776 598 79999999887 999999999999999999753         


Q ss_pred             ----ccHHHHHHHHHHH-hhCCcEEEeEEeeecCc
Q 043438           68 ----SCLDELEKILECK-REYGQIVIPVFYRVDPS   97 (146)
Q Consensus        68 ----wCl~EL~~i~~~~-~~~~~~VlPVFY~V~ps   97 (146)
                          ||+.|+..++.|. ...++.||||||.-.|.
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~  115 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG  115 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence                9999999999986 55678999999885554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.23  E-value=8.8e-12  Score=111.60  Aligned_cols=89  Identities=15%  Similarity=0.261  Sum_probs=76.6

Q ss_pred             CCCcceEEeecccccccchhH-HHHHHHHhc-----CCeeeeccCc-cCCCCcchHHHHHHhhhCccc------------
Q 043438            7 NNKKYDVFVSFRAEDTRDNFT-SHLYSALSR-----QNIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ------------   67 (146)
Q Consensus         7 ~~~~ydVFiSfrg~Dtr~~Fv-~~L~~aL~~-----~gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is------------   67 (146)
                      ..+.|||||||+++|.  .|| ..|...|+.     .|+++|++++ +.+|+.+.+++.++|++||..            
T Consensus       667 ~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~  744 (844)
T 3j0a_A          667 DMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG  744 (844)
T ss_dssp             SCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred             cceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence            3578999999999995  788 779999984     6899999987 999999999999999999865            


Q ss_pred             ccHHHHHHHHHHH-hhCCcEEEeEEeeecCc
Q 043438           68 SCLDELEKILECK-REYGQIVIPVFYRVDPS   97 (146)
Q Consensus        68 wCl~EL~~i~~~~-~~~~~~VlPVFY~V~ps   97 (146)
                      ||..|+..++.+. ++.+..||||||+--|.
T Consensus       745 wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~  775 (844)
T 3j0a_A          745 WCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ  775 (844)
T ss_dssp             STTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence            9999999888754 56678999999985543

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=90.26  E-value=0.2  Score=34.58  Aligned_cols=71  Identities=11%  Similarity=0.156  Sum_probs=35.6

Q ss_pred             CcceEEeecccccccchhHHHHHHHHhcCCeeeeccCccCCCCcchHHHHHHhhhCccc-ccHHHHHHHHHHHhhCCcEE
Q 043438            9 KKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLLNAMKHQPFQ-SCLDELEKILECKREYGQIV   87 (146)
Q Consensus         9 ~~ydVFiSfrg~Dtr~~Fv~~L~~aL~~~gi~~f~d~~~~~G~~i~~~l~~aI~~S~is-wCl~EL~~i~~~~~~~~~~V   87 (146)
                      .+|.|||||..+|.+..|+..|    .+.|+. |.|..+++-+-+-  ++ +=..+.-+ ||..|+....    +.+..|
T Consensus         3 ~~~~lFISh~~~d~~~~L~~~l----~~~~f~-~~~~~I~~~~~vI--vL-~G~~t~~s~wv~~EI~~A~----~~gkpI   70 (111)
T 1eiw_A            3 AEIRLYITEGEVEDYRVFLERL----EQSGLE-WRPATPEDADAVI--VL-AGLWGTRRDEILGAVDLAR----KSSKPI   70 (111)
T ss_dssp             CCEEEEECCCCSHHHHHHHHHH----HHHCSC-EEECCSSSCSEEE--EE-GGGTTTSHHHHHHHHHHHT----TTTCCE
T ss_pred             ceEEEEEecccHhHHHHHHHHH----hCCCCe-eecCccccCCEEE--EE-eCCCcCCChHHHHHHHHHH----HcCCCE
Confidence            4699999999998334444444    244552 3332232222210  00 00111111 9999997544    345555


Q ss_pred             EeEE
Q 043438           88 IPVF   91 (146)
Q Consensus        88 lPVF   91 (146)
                      +=|.
T Consensus        71 igV~   74 (111)
T 1eiw_A           71 ITVR   74 (111)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            5553

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=80.95  E-value=4.8  Score=29.51  Aligned_cols=30  Identities=17%  Similarity=0.346  Sum_probs=25.6

Q ss_pred             Eeecccccc--cchhHHHHHHHHhcCCeeeec
Q 043438           14 FVSFRAEDT--RDNFTSHLYSALSRQNIQTFI   43 (146)
Q Consensus        14 FiSfrg~Dt--r~~Fv~~L~~aL~~~gi~~f~   43 (146)
                      ||.|-|.|.  +.+-+..|.+.|..+|+.+..
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~   33 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL   33 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            899999886  477889999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	146
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	2e-11
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	2e-08

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 2e-11
 Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 15/110 (13%)

Query: 8   NKKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQ-LNRGDDISESLLNAMKHQPF 66
           N ++  F+S+   D+     + L   L ++ +Q  + ++    G  I E+++  ++    
Sbjct: 10  NLQFHAFISYSGHDSF-WVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYK 68

Query: 67  ------------QSCLDELEKILECKREYGQIV-IPVFYRVDPSDVRNQT 103
                       + C  EL          G    I +     P      +
Sbjct: 69  SIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSS 118

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 2e-08
 Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 17/111 (15%)

Query: 8   NKKYDVFVSFRAEDTRDNFTSHLYSAL--SRQNIQTFIDDQ-LNRGDDISESLLNAMKHQ 64
           N  YD FVS+   D      + +   L       +  +  +    G  I ++++++++  
Sbjct: 3   NICYDAFVSYSERD-AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKS 61

Query: 65  ------------PFQSCLDELEKIL-ECKREYGQIVIPVFYRVDPSDVRNQ 102
                         + C  EL+        E     I +           Q
Sbjct: 62  HKTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQ 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	146
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.53
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.41
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	80.17

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.5e-15  Score=109.84  Aligned_cols=88  Identities=18%  Similarity=0.334  Sum_probs=75.3

Q ss_pred             CCCcceEEeecccccccchhH-HHHHHHHhcCCeeeeccCc-cCCCCcchHHHHHHhhhCccc------------ccHHH
Q 043438            7 NNKKYDVFVSFRAEDTRDNFT-SHLYSALSRQNIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ------------SCLDE   72 (146)
Q Consensus         7 ~~~~ydVFiSfrg~Dtr~~Fv-~~L~~aL~~~gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is------------wCl~E   72 (146)
                      ...+|||||||+++|.  .|| ..|...|+++|+++|+|++ +.+|+.+..++.++|++|+..            ||..|
T Consensus         9 ~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~~E   86 (161)
T d1fyva_           9 RNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYE   86 (161)
T ss_dssp             SCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHHHH
T ss_pred             CCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHHHH
Confidence            4678999999999984  577 6799999999999999987 999999999999999999865            99999


Q ss_pred             HHHHHHHH-hhCCcEEEeEEeeecC
Q 043438           73 LEKILECK-REYGQIVIPVFYRVDP   96 (146)
Q Consensus        73 L~~i~~~~-~~~~~~VlPVFY~V~p   96 (146)
                      +..++++. +.....+|||+++--|
T Consensus        87 ~~~a~~~~~~~~~~~lIpV~l~~~~  111 (161)
T d1fyva_          87 LYFAHHNLFHEGSNSLILILLEPIP  111 (161)
T ss_dssp             HHTTSCCCSCSSCSSEEEEESSCCC
T ss_pred             HHHHHHHHHHcCCCceeEEEEecCc
Confidence            99887754 3445689999997433

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.7e-14  Score=101.67  Aligned_cols=91  Identities=16%  Similarity=0.237  Sum_probs=73.3

Q ss_pred             CCCcceEEeecccccccchhH-HHHHHHHhc--CCeeeeccCc-cCCCCcchHHHHHHhhhCccc------------ccH
Q 043438            7 NNKKYDVFVSFRAEDTRDNFT-SHLYSALSR--QNIQTFIDDQ-LNRGDDISESLLNAMKHQPFQ------------SCL   70 (146)
Q Consensus         7 ~~~~ydVFiSfrg~Dtr~~Fv-~~L~~aL~~--~gi~~f~d~~-~~~G~~i~~~l~~aI~~S~is------------wCl   70 (146)
                      -...|||||||+++|  ..|| .+|...|++  .|+++|.|+. +.+|+.+..++.++|+.|+..            ||.
T Consensus         2 ~~~~YDvFiSys~~D--~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~   79 (149)
T d1fyxa_           2 RNICYDAFVSYSERD--AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCK   79 (149)
T ss_dssp             CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCCEEEEEEECchhh--HHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchH
Confidence            356799999999999  4566 568999965  5999999877 999999999999999999865            999


Q ss_pred             HHHHHHHHH-HhhCCcEEEeEEeeecCccc
Q 043438           71 DELEKILEC-KREYGQIVIPVFYRVDPSDV   99 (146)
Q Consensus        71 ~EL~~i~~~-~~~~~~~VlPVFY~V~psdV   99 (146)
                      .|+...+.. .+..+..+|||+++--|...
T Consensus        80 ~E~~~a~~~~~~~~~~~iIpV~l~~~~~~~  109 (149)
T d1fyxa_          80 YELDFSHFRLFDENNDAAILILLEPIEKKA  109 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTTT
T ss_pred             HHHHHHHHHHHHcCCceEEEEEeccCchhh
Confidence            999765543 34566789999997444333

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=80.17  E-value=1.8  Score=26.69  Aligned_cols=46  Identities=11%  Similarity=0.165  Sum_probs=34.9

Q ss_pred             CcceEEeecccccccchhHHHHHHHHhcCCeeeeccCccCCCCcchHHHH
Q 043438            9 KKYDVFVSFRAEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDDISESLL   58 (146)
Q Consensus         9 ~~ydVFiSfrg~Dtr~~Fv~~L~~aL~~~gi~~f~d~~~~~G~~i~~~l~   58 (146)
                      ...+|||.-=|+.. ..++-.|...|++.||++.+|..   +..+...+-
T Consensus         2 ~~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~~---~~~l~kq~~   47 (97)
T d1wu7a1           2 EKKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLK   47 (97)
T ss_dssp             SSCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHH
T ss_pred             CCceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEECC---CCcHHHHHH
Confidence            45789998888765 57889999999999999999863   334444333