Citrus Sinensis ID: 043452

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS
Secondary Structure (PSIPRED)
ccccccccEEEcccccccEEcccccccccccccEEEcccccEEEcccHHHHccccccEEEcccccccccccccccccccccEEEccccEEEEEEcHHHHcccccccEEEEEccccEEEEEcccccccccccEEEccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEcccccccccccHHHHHHcccccEEEccccccEEcccHHccccccccEEEcccccccEEccHHHHcccccccEEEcccccccEEccccccccccccEEEccccccEEEccHHHHHccccccEEEcccccccccccHHHHccccccEEEccccccEEcccccccccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEEEEcccccccccccHHccccccEEEEEcccccccccccccccccccEEEEccccccccccHHHHHHcccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHHHHcccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccc
Coil and Loop (DISEMBL)
lakfknlkaldlsytgingslenqgiCELKNLIElnlegnaiegplpqclknltrlkvfgissnqlsgslPSVIASLTslqyldlsdnyFQGIFYLsslgnhsnlEFFMLSLVNNTlevetenwlptsQLKVLHLRncnlngtlgflqkqhdlksldlshnklvgsfpawllqhntkLEVLRltnnsftgslqlsnskldflhhldissnsftgrlpQNMSTILQKLVYLDmsknkfegSISSSISEmkdlrfldlsrnqfsgelsaplltGCFSLWLldlshnsfcgqvspkfmnltqlgwlsldnnnfsgrisngflssarslqvldisnnklvgqipswignFSSLALLTVSKnllegnipvqlknlealEILDVSENNLS
Flexible Loop (DISEMBL)
lakfknlkaldlsytgingslenQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISsnsftgrlpQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVqlknlealeildvsennls
Low Complexity Region (SEG)
LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS
Disordered region (IsUnstruct)
******LKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSK***************DLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILD*******
Disordered Region (DISOPRED)
LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS
Disordered Region (DISEMBL)
LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS
Disordered Region (DISPRO)
*AKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	384	2.2.26 [Sep-21-2011]
P47735	999	Receptor-like protein kin	no	no	0.976	0.375	0.322	6e-38
C0LGQ9	1037	Probable LRR receptor-lik	no	no	0.986	0.365	0.316	1e-35
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.953	0.293	0.325	4e-35
O82318	960	Probably inactive leucine	no	no	0.960	0.384	0.356	7e-35
Q9FL28	1173	LRR receptor-like serine/	no	no	0.963	0.315	0.317	3e-34
O80809	720	Leucine-rich repeat recep	no	no	0.958	0.511	0.356	2e-33
Q9SGP2	996	Receptor-like protein kin	no	no	0.968	0.373	0.310	4e-33
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.924	0.339	0.329	5e-33
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.971	0.328	0.305	6e-33
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.890	0.286	0.335	7e-33

>sp|P47735|RLK5_ARATH Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1

 Score =  158 bits (400), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 141/437 (32%), Positives = 210/437 (48%), Gaps = 62/437 (14%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLK-NLTRLKVF 59
           L    +L +L L    INGSL         NLI L+L  N + G +P+ L  NL  LK  
Sbjct: 85  LCHLPSLHSLSLYNNSINGSLSADDFDTCHNLISLDLSENLLVGSIPKSLPFNLPNLKFL 144

Query: 60  GISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEV 119
            IS N LS ++PS       L+ L+L+ N+  G    +SLGN + L+   L+       +
Sbjct: 145 EISGNNLSDTIPSSFGEFRKLESLNLAGNFLSGTIP-ASLGNVTTLKELKLA-----YNL 198

Query: 120 ETENWLPT-----SQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQ 173
            + + +P+     ++L+VL L  CNL G +   L +   L +LDL+ N+L GS P+W+ Q
Sbjct: 199 FSPSQIPSQLGNLTELQVLWLAGCNLVGPIPPSLSRLTSLVNLDLTFNQLTGSIPSWITQ 258

Query: 174 HNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLP--------------QN 219
             T +E + L NNSF+G L  S   +  L   D S N  TG++P              +N
Sbjct: 259 LKT-VEQIELFNNSFSGELPESMGNMTTLKRFDASMNKLTGKIPDNLNLLNLESLNLFEN 317

Query: 220 M-----------STILQKLV---------------------YLDMSKNKFEGSISSSISE 247
           M           S  L +L                      Y+D+S N+F G I +++  
Sbjct: 318 MLEGPLPESITRSKTLSELKLFNNRLTGVLPSQLGANSPLQYVDLSYNRFSGEIPANVCG 377

Query: 248 MKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDN 307
              L +L L  N FSGE+S   L  C SL  + LS+N   GQ+   F  L +L  L L +
Sbjct: 378 EGKLEYLILIDNSFSGEISNN-LGKCKSLTRVRLSNNKLSGQIPHGFWGLPRLSLLELSD 436

Query: 308 NNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQL 367
           N+F+G I    +  A++L  L IS N+  G IP+ IG+ + +  ++ ++N   G IP  L
Sbjct: 437 NSFTGSIPKTII-GAKNLSNLRISKNRFSGSIPNEIGSLNGIIEISGAENDFSGEIPESL 495

Query: 368 KNLEALEILDVSENNLS 384
             L+ L  LD+S+N LS
Sbjct: 496 VKLKQLSRLDLSKNQLS 512

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates that controls floral organ abscission. May interact with the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) ligands family.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGQ9|Y4294_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1

 Score =  151 bits (381), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 143/452 (31%), Positives = 220/452 (48%), Gaps = 73/452 (16%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L  FK+L+ LDLS    + SL  + I    +L  L+L GN   G +P+ +  L  L+   
Sbjct: 98  LGSFKSLQFLDLSDNLFSSSLPKE-IGRSVSLRNLSLSGNNFSGEIPESMGGLISLQSLD 156

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQG--------IFYLSSLGNHSNL------- 105
           +SSN LSG LP  +  L  L YL+LS N F G        I  L  L  H N        
Sbjct: 157 MSSNSLSGPLPKSLTRLNDLLYLNLSSNGFTGKMPRGFELISSLEVLDLHGNSIDGNLDG 216

Query: 106 EFFMLS------LVNNTLEVETENWLP--TSQLKVLHLRNCNLNGTL--GFLQKQHDLKS 155
           EFF+L+      +  N L   +   LP  +  +K L+L +  L G+L  GF Q   +LK 
Sbjct: 217 EFFLLTNASYVDISGNRLVTTSGKLLPGVSESIKHLNLSHNQLEGSLTSGF-QLFQNLKV 275

Query: 156 LDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSL----------------------- 192
           LDLS+N L G  P +   ++  LEVL+L+NN F+GSL                       
Sbjct: 276 LDLSYNMLSGELPGFNYVYD--LEVLKLSNNRFSGSLPNNLLKGDSLLLTTLDLSGNNLS 333

Query: 193 -QLSNSKLDFLHHLDISSNSFTGRLP-----------------QNMS--TILQKLVYLDM 232
             +S+     LH LD+SSNS TG LP                  N++  +  + + YLD+
Sbjct: 334 GPVSSIMSTTLHTLDLSSNSLTGELPLLTGGCVLLDLSNNQFEGNLTRWSKWENIEYLDL 393

Query: 233 SKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSP 292
           S+N F GS   +  ++     L+LS N+ +G L   + T    L +LD+S NS  G +  
Sbjct: 394 SQNHFTGSFPDATPQLLRANHLNLSYNKLTGSLPERIPTHYPKLRVLDISSNSLEGPIPG 453

Query: 293 KFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALL 352
             +++  L  + L NN  +G I     SS   +++LD+S+N+  G +P   G+ ++L +L
Sbjct: 454 ALLSMPTLEEIHLQNNGMTGNIGP-LPSSGSRIRLLDLSHNRFDGDLPGVFGSLTNLQVL 512

Query: 353 TVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
            ++ N L G++P  + ++ +L  LDVS+N+ +
Sbjct: 513 NLAANNLSGSLPSSMNDIVSLSSLDVSQNHFT 544

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  149 bits (375), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 139/427 (32%), Positives = 208/427 (48%), Gaps = 61/427 (14%)

Query: 9   ALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSG 68
           AL+L+  G+ GS+ +       NLI L+L  N + GP+P  L NLT L+   + SNQL+G
Sbjct: 75  ALNLTGLGLTGSI-SPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTG 133

Query: 69  SLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVET------- 121
            +PS + SL +++ L + DN   G     +LGN  NL+   L+    T  + +       
Sbjct: 134 EIPSQLGSLVNIRSLRIGDNELVGDIP-ETLGNLVNLQMLALASCRLTGPIPSQLGRLVR 192

Query: 122 -----------ENWLPT-----SQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLV 164
                      E  +P      S L V       LNGT+   L +  +L+ L+L++N L 
Sbjct: 193 VQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLT 252

Query: 165 GSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQ---NMS 221
           G  P+ L +  ++L+ L L  N   G +  S + L  L  LD+S+N+ TG +P+   NMS
Sbjct: 253 GEIPSQLGEM-SQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMS 311

Query: 222 TILQKLVYLDMSKNKFEGSISSSI-SEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLD 280
            +L     L ++ N   GS+  SI S   +L  L LS  Q SGE+    L+ C SL  LD
Sbjct: 312 QLLD----LVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVE-LSKCQSLKQLD 366

Query: 281 LSHNSFCGQV------------------------SPKFMNLTQLGWLSLDNNNFSGRISN 316
           LS+NS  G +                        SP   NLT L WL L +NN  G++  
Sbjct: 367 LSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPK 426

Query: 317 GFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEIL 376
             +S+ R L+VL +  N+  G+IP  IGN +SL ++ +  N  EG IP  +  L+ L +L
Sbjct: 427 E-ISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLL 485

Query: 377 DVSENNL 383
            + +N L
Sbjct: 486 HLRQNEL 492

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  148 bits (374), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 137/384 (35%), Positives = 193/384 (50%), Gaps = 15/384 (3%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L K KNLK + L Y  ++G +  Q I  L +L  L+L  N + GP+P  L +L +L+   
Sbjct: 213 LGKMKNLKWIYLGYNNLSGEIPYQ-IGGLSSLNHLDLVYNNLSGPIPPSLGDLKKLEYMF 271

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           +  N+LSG +P  I SL +L  LD SDN   G      +    +LE   L   NN     
Sbjct: 272 LYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIP-ELVAQMQSLEILHL-FSNNLTGKI 329

Query: 121 TENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQ--HNTK 177
            E      +LKVL L +   +G +   L K ++L  LDLS N L G  P  L    H TK
Sbjct: 330 PEGVTSLPRLKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNLTGKLPDTLCDSGHLTK 389

Query: 178 LEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKF 237
           L    L +NS    +  S      L  + + +N F+G+LP+   T LQ + +LD+S N  
Sbjct: 390 L---ILFSNSLDSQIPPSLGMCQSLERVRLQNNGFSGKLPRGF-TKLQLVNFLDLSNNNL 445

Query: 238 EGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNL 297
           +G+I++   +M  L  LDLS N+F GEL  P  +    L  LDLS N   G V    M  
Sbjct: 446 QGNINTW--DMPQLEMLDLSVNKFFGEL--PDFSRSKRLKKLDLSRNKISGVVPQGLMTF 501

Query: 298 TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN 357
            ++  L L  N  +G I    LSS ++L  LD+S+N   G+IPS    F  L+ L +S N
Sbjct: 502 PEIMDLDLSENEITGVIPRE-LSSCKNLVNLDLSHNNFTGEIPSSFAEFQVLSDLDLSCN 560

Query: 358 LLEGNIPVQLKNLEALEILDVSEN 381
            L G IP  L N+E+L  +++S N
Sbjct: 561 QLSGEIPKNLGNIESLVQVNISHN 584

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  146 bits (368), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 123/387 (31%), Positives = 199/387 (51%), Gaps = 17/387 (4%)

Query: 3   KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGIS 62
           + KN+  LDL    ++G +  + IC+  +L+ +  + N + G +P+CL +L  L++F  +
Sbjct: 142 ELKNIFYLDLRNNLLSGDVPEE-ICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAA 200

Query: 63  SNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLS--LVNNTLEVE 120
            N L+GS+P  I +L +L  LDLS N   G       GN  NL+  +L+  L+   +  E
Sbjct: 201 GNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIP-RDFGNLLNLQSLVLTENLLEGDIPAE 259

Query: 121 TENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLE 179
             N    S L  L L +  L G +   L     L++L +  NKL  S P+ L +  T+L 
Sbjct: 260 IGNC---SSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRL-TQLT 315

Query: 180 VLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEG 239
            L L+ N   G +      L+ L  L + SN+FTG  PQ++ T L+ L  L +  N   G
Sbjct: 316 HLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSI-TNLRNLTVLTVGFNNISG 374

Query: 240 SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKF--MNL 297
            + + +  + +LR L    N  +G + +  ++ C  L LLDLSHN   G++   F  MNL
Sbjct: 375 ELPADLGLLTNLRNLSAHDNLLTGPIPSS-ISNCTGLKLLDLSHNQMTGEIPRGFGRMNL 433

Query: 298 TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN 357
           T   ++S+  N+F+G I +   + + +L+ L +++N L G +   IG    L +L VS N
Sbjct: 434 T---FISIGRNHFTGEIPDDIFNCS-NLETLSVADNNLTGTLKPLIGKLQKLRILQVSYN 489

Query: 358 LLEGNIPVQLKNLEALEILDVSENNLS 384
            L G IP ++ NL+ L IL +  N  +
Sbjct: 490 SLTGPIPREIGNLKDLNILYLHSNGFT 516

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O80809|CLV2_ARATH Leucine-rich repeat receptor-like protein CLAVATA2 OS=Arabidopsis thaliana GN=CLV2 PE=1 SV=1

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 137/384 (35%), Positives = 202/384 (52%), Gaps = 16/384 (4%)

Query: 8   KALDLSYTGINGSLE-NQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQL 66
           K L L+ +G+N S + +  +C+L +L  L+L  N   G +P C  +L  L+   +S N+ 
Sbjct: 74  KVLSLTLSGLNLSSQIHPSLCKLSSLQSLDLSHNNFSGNIPSCFGSLRNLRTLNLSRNRF 133

Query: 67  SGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHS-NLEFFMLSLVNNTLEVETENWL 125
            GS+P+   SL  L+ + LS+N   G       GN S NLE    S  +   E+  E+ L
Sbjct: 134 VGSIPATFVSLKELREVVLSENRDLGGVVPHWFGNFSMNLERVDFSFCSFVGEL-PESLL 192

Query: 126 PTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTN 185
               LK L+L + N+ GTL   Q+   L  L+L+ N+  G+ P +     + L +L +  
Sbjct: 193 YLKSLKYLNLESNNMTGTLRDFQQP--LVVLNLASNQFSGTLPCFYASRPS-LSILNIAE 249

Query: 186 NSFTGSLQLSNSKLDFLHHLDISSNSFTGRL-PQNMSTILQKLVYLDMSKNKFEGSISSS 244
           NS  G L      L  L HL++S N F   + P+ M +  +KLV LD+S N F G + S 
Sbjct: 250 NSLVGGLPSCLGSLKELSHLNLSFNGFNYEISPRLMFS--EKLVMLDLSHNGFSGRLPSR 307

Query: 245 ISEMKD---LRFLDLSRNQFSGELSAPL-LTGCFSLWLLDLSHNSFCGQVSPKFMNLTQL 300
           ISE  +   L  LDLS N FSG++  PL +T   SL  L LSHN   G +  +  NLT L
Sbjct: 308 ISETTEKLGLVLLDLSHNSFSGDI--PLRITELKSLQALRLSHNLLTGDIPARIGNLTYL 365

Query: 301 GWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE 360
             + L +N  +G I    +   + L ++ ISNN L G+I   +    SL +L +S N + 
Sbjct: 366 QVIDLSHNALTGSIPLNIVGCFQLLALM-ISNNNLSGEIQPELDALDSLKILDISNNHIS 424

Query: 361 GNIPVQLKNLEALEILDVSENNLS 384
           G IP+ L  L++LEI+D+S NNLS
Sbjct: 425 GEIPLTLAGLKSLEIVDISSNNLS 448

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Involved in controlling the stem cell population size in shoot and root apical meristems, and during organ development. Promotes the formation of CLV1 multimers.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1

 Score =  142 bits (358), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 143/460 (31%), Positives = 208/460 (45%), Gaps = 88/460 (19%)

Query: 2   AKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGI 61
             F ++ ++DLS   + G   +  IC L NL  L+L  N+I   LP  +     L+   +
Sbjct: 57  GDFSSVTSVDLSSANLAGPFPSV-ICRLSNLAHLSLYNNSINSTLPLNIAACKSLQTLDL 115

Query: 62  SSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVET 121
           S N L+G LP  +A + +L +LDL+ N F G    +S G   NLE  +LSLV N L+   
Sbjct: 116 SQNLLTGELPQTLADIPTLVHLDLTGNNFSGDIP-ASFGKFENLE--VLSLVYNLLDGTI 172

Query: 122 ENWL-----------------PT---------SQLKVLHLRNCNLNG----TLGFLQKQH 151
             +L                 P+         + L+V+ L  C+L G    +LG L K  
Sbjct: 173 PPFLGNISTLKMLNLSYNPFSPSRIPPEFGNLTNLEVMWLTECHLVGQIPDSLGQLSK-- 230

Query: 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS 211
            L  LDL+ N LVG  P   L   T +  + L NNS TG +      L  L  LD S N 
Sbjct: 231 -LVDLDLALNDLVGHIPP-SLGGLTNVVQIELYNNSLTGEIPPELGNLKSLRLLDASMNQ 288

Query: 212 FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSIS------EMK---------------- 249
            TG++P  +  +   L  L++ +N  EG + +SI+      E++                
Sbjct: 289 LTGKIPDELCRV--PLESLNLYENNLEGELPASIALSPNLYEIRIFGNRLTGGLPKDLGL 346

Query: 250 --DLRFLDLSRNQFSGELSAPL-----------------------LTGCFSLWLLDLSHN 284
              LR+LD+S N+FSG+L A L                       L  C SL  + L++N
Sbjct: 347 NSPLRWLDVSENEFSGDLPADLCAKGELEELLIIHNSFSGVIPESLADCRSLTRIRLAYN 406

Query: 285 SFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIG 344
            F G V   F  L  +  L L NN+FSG IS   +  A +L +L +SNN+  G +P  IG
Sbjct: 407 RFSGSVPTGFWGLPHVNLLELVNNSFSGEISKS-IGGASNLSLLILSNNEFTGSLPEEIG 465

Query: 345 NFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
           +  +L  L+ S N   G++P  L +L  L  LD+  N  S
Sbjct: 466 SLDNLNQLSASGNKFSGSLPDSLMSLGELGTLDLHGNQFS 505

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  142 bits (357), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 184/367 (50%), Gaps = 12/367 (3%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L   K L  L L    +NGS+  + + E++++I+L +  N + GP+P     LT L+   
Sbjct: 306 LGNIKTLAVLHLYLNQLNGSIPPE-LGEMESMIDLEISENKLTGPVPDSFGKLTALEWLF 364

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           +  NQLSG +P  IA+ T L  L L  N F G F   ++     LE   L+L +N  E  
Sbjct: 365 LRDNQLSGPIPPGIANSTELTVLQLDTNNFTG-FLPDTICRGGKLE--NLTLDDNHFEGP 421

Query: 121 TENWLPTSQ-LKVLHLRNCNLNGTLG-FLQKQHDLKSLDLSHNKLVGSFPA-WLLQHNTK 177
               L   + L  +  +  + +G +         L  +DLS+N   G   A W  + + K
Sbjct: 422 VPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANW--EQSQK 479

Query: 178 LEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKF 237
           L    L+NNS TG++      +  L  LD+SSN  TG LP+++S I  ++  L ++ N+ 
Sbjct: 480 LVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNI-NRISKLQLNGNRL 538

Query: 238 EGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNL 297
            G I S I  + +L +LDLS N+FS E+  P L     L+ ++LS N     +      L
Sbjct: 539 SGKIPSGIRLLTNLEYLDLSSNRFSSEI-PPTLNNLPRLYYMNLSRNDLDQTIPEGLTKL 597

Query: 298 TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN 357
           +QL  L L  N   G IS+ F  S ++L+ LD+S+N L GQIP    +  +L  + VS N
Sbjct: 598 SQLQMLDLSYNQLDGEISSQF-RSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHN 656

Query: 358 LLEGNIP 364
            L+G IP
Sbjct: 657 NLQGPIP 663

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  142 bits (357), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 134/439 (30%), Positives = 205/439 (46%), Gaps = 66/439 (15%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L   ++L+ L L +  + G+L +  I    +L+ L+   N I G +P     L +L+V  
Sbjct: 206 LGNLQSLQYLWLDFNLLQGTLPS-AISNCSSLVHLSASENEIGGVIPAAYGALPKLEVLS 264

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGN-HSNLEFFMLSLVNNTLEV 119
           +S+N  SG++P  +   TSL  + L  N F  I    +  N  + L+  +L L  N +  
Sbjct: 265 LSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTANCRTGLQ--VLDLQENRISG 322

Query: 120 ETENWLPTSQLKVLHLRNCNLNGTL---------GFLQKQHDLK---------------- 154
               WL      +L L+N +++G L         G L++  +LK                
Sbjct: 323 RFPLWL----TNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSLTGEIPVEIKQ 378

Query: 155 -----SLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISS 209
                 LD   N L G  P +L  +   L+VL L  NSF+G +  S   L  L  L++  
Sbjct: 379 CGSLDVLDFEGNSLKGQIPEFL-GYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGE 437

Query: 210 NSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPL 269
           N+  G  P  +   L  L  LD+S N+F G++  SIS + +L FL+LS N FSGE+ A +
Sbjct: 438 NNLNGSFPVEL-MALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASV 496

Query: 270 LTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLD 329
               F L  LDLS  +  G+V  +   L  +  ++L  NNFSG +  GF SS  SL+ ++
Sbjct: 497 -GNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGF-SSLVSLRYVN 554

Query: 330 IS------------------------NNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPV 365
           +S                        +N + G IP  IGN S+L +L +  N L G+IP 
Sbjct: 555 LSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPA 614

Query: 366 QLKNLEALEILDVSENNLS 384
            L  L  L++LD+ +NNLS
Sbjct: 615 DLSRLPRLKVLDLGQNNLS 633

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  141 bits (356), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 196/394 (49%), Gaps = 52/394 (13%)

Query: 7   LKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQL 66
           L ALDL      G +  + + +  NL+E     N +EG LP  + N   LK   +S NQL
Sbjct: 426 LMALDLDSNNFTGEIP-KSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQL 484

Query: 67  SGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLP 126
           +G +P  I  LTSL  L+L+ N FQG   +  LG+ ++L    L L +N L+ +  + + 
Sbjct: 485 TGEIPREIGKLTSLSVLNLNANMFQGKIPVE-LGDCTSLT--TLDLGSNNLQGQIPDKIT 541

Query: 127 T-SQLKVLHLRNCNLNGT----------------LGFLQKQHDLKSLDLSHNKLVGSFPA 169
             +QL+ L L   NL+G+                L FLQ  H +   DLS+N+L G  P 
Sbjct: 542 ALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQ-HHGI--FDLSYNRLSGPIPE 598

Query: 170 WLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVY 229
            L +    +E+  L+NN  +G +  S S+L  L  LD+S N+ TG +P+ M   L KL  
Sbjct: 599 ELGECLVLVEI-SLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSL-KLQG 656

Query: 230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289
           L+++ N+  G I  S   +  L  L+L++N+  G + A L                    
Sbjct: 657 LNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASL-------------------- 696

Query: 290 VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSL 349
                 NL +L  + L  NN SG +S+  LS+   L  L I  NK  G+IPS +GN + L
Sbjct: 697 -----GNLKELTHMDLSFNNLSGELSSE-LSTMEKLVGLYIEQNKFTGEIPSELGNLTQL 750

Query: 350 ALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383
             L VS+NLL G IP ++  L  LE L++++NNL
Sbjct: 751 EYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNL 784

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
358345471	933	Receptor kinase [Medicago truncatula] gi	0.929	0.382	0.554	1e-87
359484714	862	PREDICTED: probable LRR receptor-like se	0.989	0.440	0.484	1e-80
297842171	966	leucine-rich repeat family protein [Arab	0.992	0.394	0.462	1e-80
255553269	2793	receptor-kinase, putative [Ricinus commu	0.927	0.127	0.493	3e-80
186495296	1000	receptor like protein 13 [Arabidopsis th	0.992	0.381	0.475	8e-80
12323814	1068	disease resistance protein, putative; 11	0.992	0.356	0.475	1e-79
12324907	910	putative disease resistance protein; 468	0.992	0.418	0.459	1e-79
15221162	965	receptor like protein 15 [Arabidopsis th	0.992	0.394	0.447	1e-77
449436623	1111	PREDICTED: probable LRR receptor-like se	0.932	0.322	0.449	2e-75
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.979	0.256	0.467	5e-75

>gi|358345471|ref|XP_003636801.1| Receptor kinase [Medicago truncatula] gi|355502736|gb|AES83939.1| Receptor kinase [Medicago truncatula]

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 204/368 (55%), Positives = 255/368 (69%), Gaps = 11/368 (2%)

Query: 25  GICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84
           G+C +KNL EL+L  N + G  PQCL+NLT L+V  +SSN   G++PS I SL SL+YL 
Sbjct: 177 GLCGMKNLQELDLSRNGMSGYFPQCLRNLTSLRVLDLSSNNFVGNIPSFIISLKSLEYLS 236

Query: 85  LSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETE---NWLPTSQLKVLHLRNCNLN 141
           L D  F GIF  SSL NHS LE F+LS   N L VETE   +W PT QLKVL LRNC LN
Sbjct: 237 LFDTNFDGIFSFSSLNNHSKLEVFLLSPKTNNLYVETEESPSWHPTFQLKVLQLRNCFLN 296

Query: 142 ----GTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSN 196
               GT   FL  QH+L+ LDLSHNKL G+FP+W+L++NTKLE L L NNSFTG+L+L  
Sbjct: 297 SKRDGTFPTFLLYQHELQLLDLSHNKLSGNFPSWILENNTKLETLYLMNNSFTGTLELPT 356

Query: 197 SKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDL 256
            K   L  L IS+N   G+L +++  I   L Y+++SKN FEG + SSI EM+ +R LDL
Sbjct: 357 FKHGLL-DLQISNNKIGGQLQEDIGKIFPNLYYVNLSKNSFEGILPSSIGEMQTIRTLDL 415

Query: 257 SRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISN 316
           S N FSGELS+ L++   SL LL LSHNSF G V P   NLT+L WL L+NN+FSG I +
Sbjct: 416 SNNNFSGELSSHLISNLTSLRLLRLSHNSFHGLV-PLLSNLTRLNWLYLNNNSFSGVIED 474

Query: 317 GFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEIL 376
           G +S+  SL  LDISNN L G+IP WIG F+ L++L++SKN L+G IP +L NL +L  L
Sbjct: 475 G-VSNNSSLFSLDISNNMLSGRIPRWIGRFTKLSVLSLSKNRLQGEIPNELCNLISLSYL 533

Query: 377 DVSENNLS 384
           D+SENNLS
Sbjct: 534 DLSENNLS 541

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484714|ref|XP_002264041.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 190/392 (48%), Positives = 252/392 (64%), Gaps = 12/392 (3%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           ++   +LK+L L Y  +NGSL  +G+C+L NL  L+L  N  EG LP CL NLT L++  
Sbjct: 114 ISTLSHLKSLTLRYNNLNGSLSMEGLCKL-NLEALDLSRNGFEGSLPACLNNLTSLRLLD 172

Query: 61  ISSNQLSGSLPS-VIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEV 119
           +S N  SG++PS + ++L SL+Y+ LSDN+F+G  +  SL NHS L  F L+  N  L+V
Sbjct: 173 LSENDFSGTIPSSLFSNLKSLEYISLSDNHFEGSIHFGSLFNHSRLVVFDLASNNKYLKV 232

Query: 120 ETEN--W-LPTSQLKVLHLRNCNLNGT----LGFLQKQHDLKSLDLSHNKLVGSFPAWLL 172
           ETEN  W  P  QLK+L L NC LN        FL  Q+DL+ +DLSHN + G  P WLL
Sbjct: 233 ETENPIWSFPLFQLKILRLSNCTLNWPSWVLPSFLPSQYDLRMVDLSHNNITGDIPTWLL 292

Query: 173 QHNTKLEVLRLTNNSFTGSLQL-SNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLD 231
            +NTKLE L   +NS TG L L SNSK   +  LD SSN   G LP  + +I   L  L+
Sbjct: 293 DNNTKLEYLSFGSNSLTGVLDLPSNSKHSHMLLLDFSSNCIHGELPPFIGSIFPGLEVLN 352

Query: 232 MSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVS 291
           +S+N  +G+I SS+ +M+ L  LDLS N  SG+L   ++ GC SL +L LS+NS  G + 
Sbjct: 353 LSRNALQGNIPSSMGDMEQLVSLDLSNNNLSGQLPEHMMMGCISLLVLKLSNNSLHGTL- 411

Query: 292 PKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLAL 351
           P   NLT L +LSLDNNNFSG IS GFL+S+ SLQ LDIS+N L GQIP+WIG+FS L+ 
Sbjct: 412 PTKSNLTDLFFLSLDNNNFSGEISRGFLNSS-SLQALDISSNSLWGQIPNWIGDFSVLST 470

Query: 352 LTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383
           L++S+N L+G +P  L  L  L  LD+S N +
Sbjct: 471 LSLSRNHLDGVVPTSLCKLNELRFLDLSHNKI 502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842171|ref|XP_002888967.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297334808|gb|EFH65226.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 184/398 (46%), Positives = 250/398 (62%), Gaps = 17/398 (4%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQG-------------ICELKNLIELNLEGNAIEGPLP 47
           L+  + LKALDLS    +GS+E QG             ICELKN  EL+L  N + G  P
Sbjct: 205 LSSLRKLKALDLSGNEFSGSMELQGKFSTNLQEWCIHGICELKNTQELDLSQNQLVGHFP 264

Query: 48  QCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEF 107
            CL +LT L+V  +SSNQL+G++PS + SL SL+YL L DN F+G F   SL N SNL  
Sbjct: 265 SCLTSLTGLRVLDLSSNQLTGTVPSTLGSLPSLEYLSLFDNDFEGSFSFGSLANLSNLMV 324

Query: 108 FMLSLVNNTLEVETEN-WLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGS 166
             L   +++L+V +E+ W P  QL V+ LR+CN+     FL  Q DL+ +DLS+NK+ G 
Sbjct: 325 LKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKVPHFLIHQKDLRHVDLSNNKISGK 384

Query: 167 FPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK 226
            P+WLL +NTKL+VL L NN FT S Q+  S  D L  LD S+N F    P+N+  I   
Sbjct: 385 LPSWLLANNTKLKVLLLQNNFFT-SFQIPKSAHDLLF-LDASANEFNHLFPENIGWIFPH 442

Query: 227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF 286
           L Y+++ KN F+G++ SS+  MK L++LDLS N F G+L    + GC+S+ +L LSHN  
Sbjct: 443 LRYMNIYKNDFQGNLPSSLGNMKGLQYLDLSHNSFHGKLPRSFVNGCYSMAILKLSHNKL 502

Query: 287 CGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNF 346
            G++ P+  NLT L  L +DNN F+G+I  G L S  +L++LD+SNN L G IPSWIG  
Sbjct: 503 SGEIFPESTNLTSLLGLFMDNNLFTGKIGQG-LRSLINLELLDMSNNNLTGVIPSWIGEL 561

Query: 347 SSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
            SL  L +S N L+G IP  L N  +L++LD+S N+LS
Sbjct: 562 PSLTALLISDNFLKGEIPTSLFNKSSLQLLDLSTNSLS 599

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553269|ref|XP_002517677.1| receptor-kinase, putative [Ricinus communis] gi|223543309|gb|EEF44841.1| receptor-kinase, putative [Ricinus communis]

 Score =  305 bits (780), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 180/365 (49%), Positives = 244/365 (66%), Gaps = 9/365 (2%)

Query: 25   GICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84
            G+C LK+L+EL L  N   GPLPQCL NLT L+V  ++SN+ SG++ SV++ LTSL+YL 
Sbjct: 1206 GLCGLKSLLELGLSVNQFSGPLPQCLSNLTNLQVLDLTSNEFSGNIQSVVSKLTSLKYLF 1265

Query: 85   LSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETE--NWLPTSQLKVLHLRNCNLN- 141
            LS N F+G+F  SSL NH  LE F LS  +  LE+ETE   W PT QLKV+ L NCNLN 
Sbjct: 1266 LSGNKFEGLFSFSSLANHKKLEIFELSSGSTMLELETEIPVWFPTFQLKVIDLPNCNLNL 1325

Query: 142  ---GTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSK 198
                   FL  QHDL+ +DLSHN L+G+FP+W+LQ+N++LEV+ + NNSFTG+ QL + +
Sbjct: 1326 RTRRIPSFLLYQHDLQFIDLSHNNLIGAFPSWILQNNSRLEVMNMMNNSFTGTFQLPSYR 1385

Query: 199  LDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSR 258
             + + +L ISSNS  G++P+++  +L  L YL+MS N FEG+I SSIS+M+ L  LDLS 
Sbjct: 1386 HELI-NLKISSNSIAGQIPKDIGLLLSNLRYLNMSWNCFEGNIPSSISQMEGLSILDLSN 1444

Query: 259  NQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGF 318
            N FSGEL   LL+    L  L LS+N+F G++ P+ MNL +L  L ++NNNFSG+I   F
Sbjct: 1445 NYFSGELPRSLLSNSTYLVALVLSNNNFQGRIFPETMNLEELTVLDMNNNNFSGKIDVDF 1504

Query: 319  LSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDV 378
                R L VLDIS NK+ G IP  + N SS+ +L +S+N   G +P    N  +L  L +
Sbjct: 1505 FYCPR-LSVLDISKNKVAGVIPIQLCNLSSVEILDLSENRFFGAMPSCF-NASSLRYLFL 1562

Query: 379  SENNL 383
             +N L
Sbjct: 1563 QKNGL 1567

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186495296|ref|NP_177557.2| receptor like protein 13 [Arabidopsis thaliana] gi|332197441|gb|AEE35562.1| receptor like protein 13 [Arabidopsis thaliana]

 Score =  303 bits (776), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 188/395 (47%), Positives = 245/395 (62%), Gaps = 14/395 (3%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQG----------ICELKNLIELNLEGNAIEGPLPQCL 50
           L   + LKALDLS    + S+E QG           C  KN+ EL L  N + G  P CL
Sbjct: 219 LFALRKLKALDLSDNEFSSSVELQGKFAKTKPLSGTCPWKNMEELKLSNNKLAGQFPLCL 278

Query: 51  KNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFML 110
            +LT L+V  +SSNQL+G++PS +A+L SL+YL L  N F+G F L  L N S L+   L
Sbjct: 279 TSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLRL 338

Query: 111 SLVNNTLEVETE-NWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPA 169
              +N+LEVE E +W P  QL V+ LR+CNL     FL  Q DL  +DLS N++ G+FP+
Sbjct: 339 DSQSNSLEVEFETSWKPKFQLVVIALRSCNLEKVPHFLLHQKDLHHVDLSDNQIHGNFPS 398

Query: 170 WLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVY 229
           WLL++NTKLEVL L NNSFT S QL  S  + L  L++S N F     QN   IL  LV 
Sbjct: 399 WLLENNTKLEVLLLQNNSFT-SFQLPKSAHNLLF-LNVSVNKFNHLFLQNFGWILPHLVC 456

Query: 230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289
           ++++ N F+G++ SS+  MK + FLDLS N+F G+L    L GC++L +L LSHN   G+
Sbjct: 457 VNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGE 516

Query: 290 VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSL 349
           V P+  N T+L  +S+DNN F+G I  GF  S  SL VLDISNNKL G IPSWIG    L
Sbjct: 517 VFPEAANFTRLWVMSMDNNLFTGNIGKGF-RSLPSLNVLDISNNKLTGVIPSWIGERQGL 575

Query: 350 ALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
             L +S N+LEG IP  L N+  L++LD+S N LS
Sbjct: 576 FALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLS 610

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12323814|gb|AAG51873.1|AC079678_3 disease resistance protein, putative; 11609-15699 [Arabidopsis thaliana]

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 188/395 (47%), Positives = 245/395 (62%), Gaps = 14/395 (3%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQG----------ICELKNLIELNLEGNAIEGPLPQCL 50
           L   + LKALDLS    + S+E QG           C  KN+ EL L  N + G  P CL
Sbjct: 287 LFALRKLKALDLSDNEFSSSVELQGKFAKTKPLSGTCPWKNMEELKLSNNKLAGQFPLCL 346

Query: 51  KNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFML 110
            +LT L+V  +SSNQL+G++PS +A+L SL+YL L  N F+G F L  L N S L+   L
Sbjct: 347 TSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLRL 406

Query: 111 SLVNNTLEVETE-NWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPA 169
              +N+LEVE E +W P  QL V+ LR+CNL     FL  Q DL  +DLS N++ G+FP+
Sbjct: 407 DSQSNSLEVEFETSWKPKFQLVVIALRSCNLEKVPHFLLHQKDLHHVDLSDNQIHGNFPS 466

Query: 170 WLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVY 229
           WLL++NTKLEVL L NNSFT S QL  S  + L  L++S N F     QN   IL  LV 
Sbjct: 467 WLLENNTKLEVLLLQNNSFT-SFQLPKSAHNLLF-LNVSVNKFNHLFLQNFGWILPHLVC 524

Query: 230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289
           ++++ N F+G++ SS+  MK + FLDLS N+F G+L    L GC++L +L LSHN   G+
Sbjct: 525 VNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGE 584

Query: 290 VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSL 349
           V P+  N T+L  +S+DNN F+G I  GF  S  SL VLDISNNKL G IPSWIG    L
Sbjct: 585 VFPEAANFTRLWVMSMDNNLFTGNIGKGF-RSLPSLNVLDISNNKLTGVIPSWIGERQGL 643

Query: 350 ALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
             L +S N+LEG IP  L N+  L++LD+S N LS
Sbjct: 644 FALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLS 678

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12324907|gb|AAG52409.1|AC020579_11 putative disease resistance protein; 46848-50365 [Arabidopsis thaliana]

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 177/385 (45%), Positives = 246/385 (63%), Gaps = 4/385 (1%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L    NL+ LDLS    NGS+  QGICEL N+ EL+L  N + G LP CL +LT L+V  
Sbjct: 160 LRDLTNLELLDLSRNRFNGSIPIQGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLD 219

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           +SSN+L+G++PS + SL SL+YL L DN F+G F   SL N SNL    L   +++L+V 
Sbjct: 220 LSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVL 279

Query: 121 TE-NWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLE 179
           +E +W P  QL V+ LR+CN+     FL  Q DL+ +DLS N + G  P+WLL +NTKL+
Sbjct: 280 SESSWKPKFQLSVIALRSCNMEKVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLK 339

Query: 180 VLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEG 239
           VL L NN FT S Q+  S  + L  LD+S+N F    P+N+  I   L YL+ SKN F+ 
Sbjct: 340 VLLLQNNLFT-SFQIPKSAHNLL-FLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQE 397

Query: 240 SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQ 299
           ++ SS+  M  ++++DLSRN F G L    + GC+S+ +L LSHN   G++ P+  N T 
Sbjct: 398 NLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTN 457

Query: 300 LGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLL 359
           +  L +DNN F+G+I  G L S  +L++LD+SNN L G IPSWIG   SL  L +S N L
Sbjct: 458 ILGLFMDNNLFTGKIGQG-LRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFL 516

Query: 360 EGNIPVQLKNLEALEILDVSENNLS 384
           +G+IP+ L N  +L++LD+S N+LS
Sbjct: 517 KGDIPMSLFNKSSLQLLDLSANSLS 541

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221162|ref|NP_177559.1| receptor like protein 15 [Arabidopsis thaliana] gi|12323812|gb|AAG51871.1|AC079678_1 disease resistance protein, putative; 1096-4664 [Arabidopsis thaliana] gi|332197443|gb|AEE35564.1| receptor like protein 15 [Arabidopsis thaliana]

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 178/398 (44%), Positives = 249/398 (62%), Gaps = 17/398 (4%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQG-------------ICELKNLIELNLEGNAIEGPLP 47
           L+  + LKALDLS    +GS+E QG             ICEL N+ EL+L  N + G LP
Sbjct: 202 LSSLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGICELNNMQELDLSQNKLVGHLP 261

Query: 48  QCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEF 107
            CL +LT L+V  +SSN+L+G++PS + SL SL+YL L DN F+G F   SL N SNL  
Sbjct: 262 SCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMV 321

Query: 108 FMLSLVNNTLEVETEN-WLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGS 166
             L   +++L+V +E+ W P  QL V+ LR+CN+     FL  Q DL+ +DLS N + G 
Sbjct: 322 LKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKVPHFLLHQKDLRHVDLSDNNISGK 381

Query: 167 FPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK 226
            P+WLL +NTKL+VL L NN FT S Q+  S  + L  LD+S+N F    P+N+  I   
Sbjct: 382 LPSWLLANNTKLKVLLLQNNLFT-SFQIPKSAHNLLF-LDVSANDFNHLFPENIGWIFPH 439

Query: 227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF 286
           L YL+ SKN F+ ++ SS+  M  ++++DLSRN F G L    + GC+S+ +L LSHN  
Sbjct: 440 LRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKL 499

Query: 287 CGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNF 346
            G++ P+  N T +  L +DNN F+G+I  G L S  +L++LD+SNN L G IPSWIG  
Sbjct: 500 SGEIFPESTNFTNILGLFMDNNLFTGKIGQG-LRSLINLELLDMSNNNLTGVIPSWIGEL 558

Query: 347 SSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
            SL  L +S N L+G+IP+ L N  +L++LD+S N+LS
Sbjct: 559 PSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLS 596

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436623|ref|XP_004136092.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Cucumis sativus]

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 179/398 (44%), Positives = 244/398 (61%), Gaps = 40/398 (10%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L   K L+ LDLSY   NG+L  QG CE  +L ELN++ N I   +P+C+ N T LK   
Sbjct: 309 LQDLKKLRVLDLSYNQFNGTLPIQGFCESNSLFELNIKNNQIRDKIPECIGNFTNLKFLD 368

Query: 61  ISSNQLSGSLPS-VIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLS---LVNNT 116
           +S NQLSG +PS  IA LTS++YL   DN F+G F  SSL NHS L +FMLS    V N 
Sbjct: 369 VSRNQLSGEIPSTAIAKLTSIEYLSFLDNDFEGSFSFSSLANHSKLWYFMLSGSDYVGNI 428

Query: 117 LEVETEN---WLPTSQLKVLHLRNCNLNGTLG-------FLQKQHDLKSLDLSHNKLVGS 166
           ++VETE+   W PT QL++L L+NCNLN           FL  Q+ L  +DL+HN L G+
Sbjct: 429 IQVETEDEPQWQPTFQLEILTLKNCNLNKQAAAASNVPSFLLSQNKLIYIDLAHNHLTGA 488

Query: 167 FPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK 226
           FP WLLQ+N++L  L L++N  TG LQLS S ++ L  ++IS+N F+G+LP N+  +L K
Sbjct: 489 FPFWLLQNNSELVHLDLSDNLLTGPLQLSTS-INNLRVMEISNNLFSGQLPTNLGFLLPK 547

Query: 227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF 286
           + + ++S+N FEG++  SI +MK L +LDLS N FSG+L                     
Sbjct: 548 VEHFNLSRNNFEGNLPLSIEQMKSLHWLDLSNNNFSGDL--------------------- 586

Query: 287 CGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFL-SSARSLQVLDISNNKLVGQIPSWIGN 345
             Q+S  F  +  L +L L +NNFSG I +GF+ +   SL  LDISNN + G+IPSWIG+
Sbjct: 587 --QIS-MFNYIPFLEFLLLGSNNFSGSIEDGFINTEGFSLVALDISNNMISGKIPSWIGS 643

Query: 346 FSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383
              L  + +SKN   G +PV++ +L  L ILDVS+N L
Sbjct: 644 LKGLQYVQISKNHFAGELPVEMCSLSQLIILDVSQNQL 681

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  287 bits (735), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 180/385 (46%), Positives = 243/385 (63%), Gaps = 9/385 (2%)

Query: 6    NLKALDLSYTGINGSLEN-QGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSN 64
            +LKAL L   GINGS    QG+C+LKNL EL+L  N  EG +  CL NLT L+   +S N
Sbjct: 717  SLKALSLRSNGINGSQTALQGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALDLSKN 776

Query: 65   QLSGSL-PSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETEN 123
            + SG+L  S+ A L  L++L LS N FQ    +SS   HS LE   L   NNTL +E+E+
Sbjct: 777  RFSGNLDSSLFAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLDLICGNNTLLLESED 836

Query: 124  --WLPTSQLKVLHLRNCNLN-GTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLE 179
              W+P+ QLKV  L +C L  G++  FL  QHDL+ +DLS++ L   FP WL+++NT+LE
Sbjct: 837  QTWVPSFQLKVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLE 896

Query: 180  VLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEG 239
             L L NNS TG   L      F   +DIS+N   G++P N+S  L  L++L++S+N FEG
Sbjct: 897  ELNLKNNSLTGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEG 956

Query: 240  SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQ 299
            SI  S   M+ L FLDLS N F+G +   L  GC SL  L LS N   GQ+ P+  NL  
Sbjct: 957  SI-PSFGGMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPS 1015

Query: 300  LGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLL 359
            L  L LD+N+FSG+I +  LS++  L+ L +S+N + G++P WIGN S+LA L +  N L
Sbjct: 1016 LRHLELDDNHFSGKIPD--LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSL 1073

Query: 360  EGNIPVQLKNLEALEILDVSENNLS 384
            EG IPV+  +L+ALE+LD+S NNLS
Sbjct: 1074 EGPIPVEFCSLDALELLDLSNNNLS 1098

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.992	0.381	0.475	2.1e-90
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.992	0.394	0.447	2.4e-87
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.979	0.385	0.477	4.7e-80
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.989	0.426	0.443	2.7e-75
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.973	0.345	0.433	3.2e-72
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.945	0.399	0.449	4.1e-72
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.981	0.403	0.407	3.2e-60
TAIR|locus:2005540	999	HAE "HAESA" [Arabidopsis thali	0.979	0.376	0.360	7.4e-47
TAIR|locus:2206245	720	CLV2 "clavata 2" [Arabidopsis	0.958	0.511	0.356	5.5e-46
TAIR|locus:2091353	1016	AT3G28040 [Arabidopsis thalian	0.963	0.364	0.345	2.6e-42

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 835 (299.0 bits), Expect = 2.1e-90, Sum P(2) = 2.1e-90
 Identities = 188/395 (47%), Positives = 245/395 (62%)

Query:     1 LAKFKNLKALDLSYTGINGSLENQG----------ICELKNLIELNLEGNAIEGPLPQCL 50
             L   + LKALDLS    + S+E QG           C  KN+ EL L  N + G  P CL
Sbjct:   219 LFALRKLKALDLSDNEFSSSVELQGKFAKTKPLSGTCPWKNMEELKLSNNKLAGQFPLCL 278

Query:    51 KNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFML 110
              +LT L+V  +SSNQL+G++PS +A+L SL+YL L  N F+G F L  L N S L+   L
Sbjct:   279 TSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLRL 338

Query:   111 SLVNNTLEVETE-NWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPA 169
                +N+LEVE E +W P  QL V+ LR+CNL     FL  Q DL  +DLS N++ G+FP+
Sbjct:   339 DSQSNSLEVEFETSWKPKFQLVVIALRSCNLEKVPHFLLHQKDLHHVDLSDNQIHGNFPS 398

Query:   170 WLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVY 229
             WLL++NTKLEVL L NNSFT S QL  S  + L  L++S N F     QN   IL  LV 
Sbjct:   399 WLLENNTKLEVLLLQNNSFT-SFQLPKSAHNLLF-LNVSVNKFNHLFLQNFGWILPHLVC 456

Query:   230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289
             ++++ N F+G++ SS+  MK + FLDLS N+F G+L    L GC++L +L LSHN   G+
Sbjct:   457 VNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGE 516

Query:   290 VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSL 349
             V P+  N T+L  +S+DNN F+G I  GF  S  SL VLDISNNKL G IPSWIG    L
Sbjct:   517 VFPEAANFTRLWVMSMDNNLFTGNIGKGF-RSLPSLNVLDISNNKLTGVIPSWIGERQGL 575

Query:   350 ALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
               L +S N+LEG IP  L N+  L++LD+S N LS
Sbjct:   576 FALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLS 610

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 816 (292.3 bits), Expect = 2.4e-87, Sum P(2) = 2.4e-87
 Identities = 178/398 (44%), Positives = 249/398 (62%)

Query:     1 LAKFKNLKALDLSYTGINGSLENQG-------------ICELKNLIELNLEGNAIEGPLP 47
             L+  + LKALDLS    +GS+E QG             ICEL N+ EL+L  N + G LP
Sbjct:   202 LSSLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGICELNNMQELDLSQNKLVGHLP 261

Query:    48 QCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEF 107
              CL +LT L+V  +SSN+L+G++PS + SL SL+YL L DN F+G F   SL N SNL  
Sbjct:   262 SCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMV 321

Query:   108 FMLSLVNNTLEVETEN-WLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGS 166
               L   +++L+V +E+ W P  QL V+ LR+CN+     FL  Q DL+ +DLS N + G 
Sbjct:   322 LKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKVPHFLLHQKDLRHVDLSDNNISGK 381

Query:   167 FPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK 226
              P+WLL +NTKL+VL L NN FT S Q+  S  + L  LD+S+N F    P+N+  I   
Sbjct:   382 LPSWLLANNTKLKVLLLQNNLFT-SFQIPKSAHNLLF-LDVSANDFNHLFPENIGWIFPH 439

Query:   227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF 286
             L YL+ SKN F+ ++ SS+  M  ++++DLSRN F G L    + GC+S+ +L LSHN  
Sbjct:   440 LRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKL 499

Query:   287 CGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNF 346
              G++ P+  N T +  L +DNN F+G+I  G L S  +L++LD+SNN L G IPSWIG  
Sbjct:   500 SGEIFPESTNFTNILGLFMDNNLFTGKIGQG-LRSLINLELLDMSNNNLTGVIPSWIGEL 558

Query:   347 SSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
              SL  L +S N L+G+IP+ L N  +L++LD+S N+LS
Sbjct:   559 PSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLS 596

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
 Identities = 182/381 (47%), Positives = 241/381 (63%)

Query:     6 NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQ 65
             NL+ L L++  ++G +  +  CE+KNL +L+L GN  EG LP CL NL +L+V  +SSNQ
Sbjct:   236 NLEVLGLAWNHLDGPIPKEVFCEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQ 295

Query:    66 LSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETE-NW 124
             LSG+LP+   SL SL+YL LSDN F+G F L+ L N + L+ F LS  +  L+VETE NW
Sbjct:   296 LSGNLPASFNSLESLEYLSLSDNNFEGFFSLNPLANLTKLKVFRLSSTSEMLQVETESNW 355

Query:   125 LPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLT 184
             LP  QL V  L  C+L     FL  Q +L+ +DLS N+L G  P WLL++N +L+VL+L 
Sbjct:   356 LPKFQLTVAALPFCSLGKIPNFLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLK 415

Query:   185 NNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSS 244
             NNSFT   Q+    +  L  LD S+N  TG LP N+  +L +L++++ S N F+G++ SS
Sbjct:   416 NNSFT-IFQIPTI-VHKLQVLDFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSS 473

Query:   245 ISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLS 304
             + EM D+ FLDLS N FSGEL   LLTGCFSL  L LSHNSF G + P    LT L  L 
Sbjct:   474 MGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLR 533

Query:   305 LDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSS-LALLTVSKNLLEGNI 363
             + NN F+G I  G L +  +L + D SNN+L G I S I   SS L +L +S NLLEG +
Sbjct:   534 MHNNLFTGEIGVG-LRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTL 592

Query:   364 PVQLKNLEALEILDVSENNLS 384
             P  L  +  L  LD+S N LS
Sbjct:   593 PPSLLAIHHLNFLDLSGNLLS 613

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 171/386 (44%), Positives = 241/386 (62%)

Query:     1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
             L   +NL+ALDLS    +GSL+ QGIC L+ L EL L  N  EG +P C    ++L+V  
Sbjct:   149 LTNLRNLRALDLSNNKFSGSLQKQGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLD 208

Query:    61 ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLE-V 119
             +SSN LSG +P  I+   S++YL L DN F+G+F L  +   + L+ F LS  +  L+ V
Sbjct:   209 LSSNHLSGKIPYFISDFKSMEYLSLLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIV 268

Query:   120 ETE-NWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKL 178
             ET  +    SQL  + L +CNL    GFL  Q +L+ +DLS+N L G FP WLL++NT+L
Sbjct:   269 ETNVSGGLQSQLSSIMLSHCNLGKIPGFLWYQQELRVIDLSNNILSGVFPTWLLENNTEL 328

Query:   179 EVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFE 238
             + L L NNSF  +L L  + +  L  LD+S N+F  +LP+++  IL  L +L++S N+F 
Sbjct:   329 QALLLQNNSFK-TLTLPRT-MRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFL 386

Query:   239 GSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLT 298
             G++ SS++ M+++ F+DLS N FSG+L   L TGC+SL  L LSHN F G +  K  + T
Sbjct:   387 GNMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDET 446

Query:   299 QLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNL 358
              L  L +DNN F+G+I    L+  R L V+D+SNN L G IP W+GNF  L +L +S N 
Sbjct:   447 SLITLIMDNNMFTGKIPRTLLN-LRMLSVIDLSNNLLTGTIPRWLGNFF-LEVLRISNNR 504

Query:   359 LEGNIPVQLKNLEALEILDVSENNLS 384
             L+G IP  L N+  L +LD+S N LS
Sbjct:   505 LQGAIPPSLFNIPYLWLLDLSGNFLS 530

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 734 (263.4 bits), Expect = 3.2e-72, P = 3.2e-72
 Identities = 166/383 (43%), Positives = 236/383 (61%)

Query:     6 NLKALDLSYTGINGSLENQ-GICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSN 64
             +L+ LD     ++ + E   GIC L  L EL+L  NA+   LP CL NLT L+   +S+N
Sbjct:   333 SLQVLDFKRNQLSLTHEGYLGICRLMKLRELDLSSNALTS-LPYCLGNLTHLRTLDLSNN 391

Query:    65 QLSGSLPSVIASLTS-LQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETEN 123
             QL+G+L S ++ L S L+YL L DN F G F  +SL N + L  F LS     ++V+TE+
Sbjct:   392 QLNGNLSSFVSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTES 451

Query:   124 -WLPTSQLKVLHLRNCNLNGT-LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVL 181
              W P  QLK+L+L NC+L  T LGFL  Q DL  +DLSHNKL G+FP WL+++NT+L+ +
Sbjct:   452 SWAPLFQLKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTI 511

Query:   182 RLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSI 241
              L+ NS T  LQL    +  L  LDISSN     + +++  +   L +++ S N F+G+I
Sbjct:   512 LLSGNSLT-KLQLP-ILVHGLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTI 569

Query:   242 SSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLG 301
              SSI EMK L+ LD+S N   G+L    L+GC+SL +L LS+N   G++  K  NLT L 
Sbjct:   570 PSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLV 629

Query:   302 WLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG 361
              L LD NNF+G +  G L S ++L +LDIS+N+  G +P WIG  S L+ L +S N L+G
Sbjct:   630 GLFLDGNNFTGSLEEGLLKS-KNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKG 688

Query:   362 NIPVQLKNLEALEILDVSENNLS 384
               P  L+    +E++D+S N+ S
Sbjct:   689 PFPF-LRQSPWVEVMDISHNSFS 710

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 166/369 (44%), Positives = 226/369 (61%)

Query:     5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSN 64
             K LKALDLS  GI  S+E Q  CE+KNL EL+L G    G LP C  NL +L+   +SSN
Sbjct:   195 KKLKALDLSSNGIYSSMEWQVFCEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSN 254

Query:    65 QLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETEN- 123
             QL+G++P   +SL SL+YL LSDN F+G F L+ L N + L+ F+ S  ++ ++V+ E+ 
Sbjct:   255 QLTGNIPPSFSSLESLEYLSLSDNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQVKIEST 314

Query:   124 WLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRL 183
             W P  QL VL LR C+L     FL  Q +L  +DLS N++ G  P WLL++N +LEVL+L
Sbjct:   315 WQPLFQLSVLVLRLCSLEKIPNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQL 374

Query:   184 TNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISS 243
              NNSFT   Q+  S +  L  LD S N+  G  P N   +L  LV+++ S N F+G+  S
Sbjct:   375 KNNSFT-IFQMPTS-VHNLQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPS 432

Query:   244 SISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWL 303
             S+ EM ++ FLDLS N  SGEL    ++ CFSL +L LSHN F G   P+  N T L  L
Sbjct:   433 SMGEMYNISFLDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVL 492

Query:   304 SLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNI 363
              ++NN F+G+I  G L+    L +LD+SNN L G++P  +  F  L  L +S NLL G +
Sbjct:   493 RINNNLFTGKIGVGLLTLV-DLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGAL 551

Query:   364 P--VQLKNL 370
             P  V L N+
Sbjct:   552 PSHVSLDNV 560

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 3.2e-60, P = 3.2e-60
 Identities = 158/388 (40%), Positives = 212/388 (54%)

Query:     1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLP-QCLKNLTRLKVF 59
             L   K LKALDLS    + S+E Q +  L NL  L L  N ++GP+P +    L  L+  
Sbjct:   192 LIHLKKLKALDLSSNKFSSSMELQELQNLINLEVLGLAQNHVDGPIPIEVFCKLKNLRDL 251

Query:    60 GISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEV 119
              +  N   G +P  + SL  L+ LDLS N   G    SS  +  +LE+  LSL +N  + 
Sbjct:   252 DLKGNHFVGQIPLCLGSLKKLRVLDLSSNQLSGDLP-SSFSSLESLEY--LSLSDNNFDG 308

Query:   120 ETE-NWLPT-SQLK-VLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNT 176
                 N L   + LK V+ LR C+L     FL  Q  L+ +DLS N L G+ P WLL +N 
Sbjct:   309 SFSLNPLTNLTNLKFVVVLRFCSLEKIPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNP 368

Query:   177 KLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNK 236
             +LEVL+L NNSFT  +    + +  L   D S+N+  G+ P  M   L  LV L+ S N 
Sbjct:   369 ELEVLQLQNNSFT--IFPIPTMVHNLQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNG 425

Query:   237 FEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMN 296
             F+G   +SI EMK++ FLDLS N FSG+L    +TGC S+  L LSHN F G+  P+  N
Sbjct:   426 FQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETN 485

Query:   297 LTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSK 356
                L  L +DNN F+G I  G LS++  L++LD+SNN L G IP W+  F  L  + +S 
Sbjct:   486 FPSLDVLRMDNNLFTGNIGGG-LSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISN 544

Query:   357 NLLEGNIPVQLKNLEALEILDVSENNLS 384
             N LEG IP  L  +  L  LD+S N  S
Sbjct:   545 NFLEGTIPPSLLGMPFLSFLDLSGNQFS 572

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2005540 HAE "HAESA" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 7.4e-47, P = 7.4e-47
 Identities = 140/388 (36%), Positives = 202/388 (52%)

Query:     1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLK-NLTRLKVF 59
             L    +L +L L    INGSL         NLI L+L  N + G +P+ L  NL  LK  
Sbjct:    85 LCHLPSLHSLSLYNNSINGSLSADDFDTCHNLISLDLSENLLVGSIPKSLPFNLPNLKFL 144

Query:    60 GISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEV 119
              IS N LS ++PS       L+ L+L+ N+  G    +SLGN + L+   L+  N     
Sbjct:   145 EISGNNLSDTIPSSFGEFRKLESLNLAGNFLSGTIP-ASLGNVTTLKELKLAY-NLFSPS 202

Query:   120 ETENWLPT-SQLKVLHLRNCNLNGTLG-FLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTK 177
             +  + L   ++L+VL L  CNL G +   L +   L +LDL+ N+L GS P+W+ Q  T 
Sbjct:   203 QIPSQLGNLTELQVLWLAGCNLVGPIPPSLSRLTSLVNLDLTFNQLTGSIPSWITQLKT- 261

Query:   178 LEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKF 237
             +E + L NNSF+G L  S   +  L   D S N  TG++P N++  L  L  L++ +N  
Sbjct:   262 VEQIELFNNSFSGELPESMGNMTTLKRFDASMNKLTGKIPDNLN--LLNLESLNLFENML 319

Query:   238 EGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFS-LWLLDLSHNSFCGQVSPKFMN 296
             EG +  SI+  K L  L L  N+ +G L + L  G  S L  +DLS+N F G++      
Sbjct:   320 EGPLPESITRSKTLSELKLFNNRLTGVLPSQL--GANSPLQYVDLSYNRFSGEIPANVCG 377

Query:   297 LTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSK 356
               +L +L L +N+FSG ISN  L   +SL  + +SNNKL GQIP        L+LL +S 
Sbjct:   378 EGKLEYLILIDNSFSGEISNN-LGKCKSLTRVRLSNNKLSGQIPHGFWGLPRLSLLELSD 436

Query:   357 NLLEGNIPVQLKNLEALEILDVSENNLS 384
             N   G+IP  +   + L  L +S+N  S
Sbjct:   437 NSFTGSIPKTIIGAKNLSNLRISKNRFS 464

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2206245 CLV2 "clavata 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 5.5e-46, P = 5.5e-46
 Identities = 137/384 (35%), Positives = 202/384 (52%)

Query:     8 KALDLSYTGINGSLE-NQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQL 66
             K L L+ +G+N S + +  +C+L +L  L+L  N   G +P C  +L  L+   +S N+ 
Sbjct:    74 KVLSLTLSGLNLSSQIHPSLCKLSSLQSLDLSHNNFSGNIPSCFGSLRNLRTLNLSRNRF 133

Query:    67 SGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHS-NLEFFMLSLVNNTLEVETENWL 125
              GS+P+   SL  L+ + LS+N   G       GN S NLE    S  +   E+  E+ L
Sbjct:   134 VGSIPATFVSLKELREVVLSENRDLGGVVPHWFGNFSMNLERVDFSFCSFVGELP-ESLL 192

Query:   126 PTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTN 185
                 LK L+L + N+ GTL   Q+   L  L+L+ N+  G+ P +     + L +L +  
Sbjct:   193 YLKSLKYLNLESNNMTGTLRDFQQP--LVVLNLASNQFSGTLPCFYASRPS-LSILNIAE 249

Query:   186 NSFTGSLQLSNSKLDFLHHLDISSNSFTGRL-PQNMSTILQKLVYLDMSKNKFEGSISSS 244
             NS  G L      L  L HL++S N F   + P+ M +  +KLV LD+S N F G + S 
Sbjct:   250 NSLVGGLPSCLGSLKELSHLNLSFNGFNYEISPRLMFS--EKLVMLDLSHNGFSGRLPSR 307

Query:   245 ISEMKD---LRFLDLSRNQFSGELSAPL-LTGCFSLWLLDLSHNSFCGQVSPKFMNLTQL 300
             ISE  +   L  LDLS N FSG++  PL +T   SL  L LSHN   G +  +  NLT L
Sbjct:   308 ISETTEKLGLVLLDLSHNSFSGDI--PLRITELKSLQALRLSHNLLTGDIPARIGNLTYL 365

Query:   301 GWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE 360
               + L +N  +G I    +   + L ++ ISNN L G+I   +    SL +L +S N + 
Sbjct:   366 QVIDLSHNALTGSIPLNIVGCFQLLALM-ISNNNLSGEIQPELDALDSLKILDISNNHIS 424

Query:   361 GNIPVQLKNLEALEILDVSENNLS 384
             G IP+ L  L++LEI+D+S NNLS
Sbjct:   425 GEIPLTLAGLKSLEIVDISSNNLS 448

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=TAS

GO:0016020 "membrane" evidence=ISS

GO:0048507 "meristem development" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=IMP;RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0009653 "anatomical structure morphogenesis" evidence=IMP

GO:0040008 "regulation of growth" evidence=IMP

TAIR|locus:2091353 AT3G28040 [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.6e-42, P = 2.6e-42
 Identities = 134/388 (34%), Positives = 200/388 (51%)

Query:     5 KNLKALDLSYTGI--NGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGIS 62
             K  + ++LS  G+   G + N+GI +L+ L  L+L  N   G +   L N   L+   +S
Sbjct:    75 KTSRVIELSLDGLALTGKI-NRGIQKLQRLKVLSLSNNNFTGNI-NALSNNNHLQKLDLS 132

Query:    63 SNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETE 122
              N LSG +PS + S+TSLQ+LDL+ N F G        N S+L +  LSL +N LE +  
Sbjct:   133 HNNLSGQIPSSLGSITSLQHLDLTGNSFSGTLSDDLFNNCSSLRY--LSLSHNHLEGQIP 190

Query:   123 NWL-PTSQLKVLHLRNCNLNGTLGFLQ---KQHDLKSLDLSHNKLVGSFPAWLLQ-HNTK 177
             + L   S L  L+L     +G   F+    +   L++LDLS N L GS P  +L  HN  
Sbjct:   191 STLFRCSVLNSLNLSRNRFSGNPSFVSGIWRLERLRALDLSSNSLSGSIPLGILSLHN-- 248

Query:   178 LEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKF 237
             L+ L+L  N F+G+L         L+ +D+SSN F+G LP+ +   L+ L + D+S N  
Sbjct:   249 LKELQLQRNQFSGALPSDIGLCPHLNRVDLSSNHFSGELPRTLQK-LKSLNHFDVSNNLL 307

Query:   238 EGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNL 297
              G     I +M  L  LD S N+ +G+L + + +   SL  L+LS N   G+V     + 
Sbjct:   308 SGDFPPWIGDMTGLVHLDFSSNELTGKLPSSI-SNLRSLKDLNLSENKLSGEVPESLESC 366

Query:   298 TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGN-FSSLALLTVSK 356
              +L  + L  N+FSG I +GF      LQ +D S N L G IP      F SL  L +S 
Sbjct:   367 KELMIVQLKGNDFSGNIPDGFFDLG--LQEMDFSGNGLTGSIPRGSSRLFESLIRLDLSH 424

Query:   357 NLLEGNIPVQLKNLEALEILDVSENNLS 384
             N L G+IP ++     +  L++S N+ +
Sbjct:   425 NSLTGSIPGEVGLFIHMRYLNLSWNHFN 452

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	384
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-49
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-41
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-35
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-32
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-27
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  178 bits (453), Expect = 2e-49
 Identities = 142/386 (36%), Positives = 202/386 (52%), Gaps = 13/386 (3%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L + K+LK + L Y  ++G +  + I  L +L  L+L  N + GP+P  L NL  L+   
Sbjct: 208 LGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQG-IFYLSSLGNHSNLEFFMLSLVNNTLEV 119
           +  N+LSG +P  I SL  L  LDLSDN   G I  L  +    NLE  +L L +N    
Sbjct: 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL--VIQLQNLE--ILHLFSNNFTG 322

Query: 120 ETENWLPT-SQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTK 177
           +    L +  +L+VL L +   +G +   L K ++L  LDLS N L G  P  L   +  
Sbjct: 323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS-SGN 381

Query: 178 LEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKF 237
           L  L L +NS  G +  S      L  + +  NSF+G LP    T L  + +LD+S N  
Sbjct: 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVYFLDISNNNL 440

Query: 238 EGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNL 297
           +G I+S   +M  L+ L L+RN+F G L  P   G   L  LDLS N F G V  K  +L
Sbjct: 441 QGRINSRKWDMPSLQMLSLARNKFFGGL--PDSFGSKRLENLDLSRNQFSGAVPRKLGSL 498

Query: 298 TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN 357
           ++L  L L  N  SG I +  LSS + L  LD+S+N+L GQIP+       L+ L +S+N
Sbjct: 499 SELMQLKLSENKLSGEIPDE-LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN 557

Query: 358 LLEGNIPVQLKNLEALEILDVSENNL 383
            L G IP  L N+E+L  +++S N+L
Sbjct: 558 QLSGEIPKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  155 bits (392), Expect = 2e-41
 Identities = 136/407 (33%), Positives = 204/407 (50%), Gaps = 39/407 (9%)

Query: 6   NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS-- 63
           NL+ LDLS   ++G + N  I    +L  L+L GN + G +P  L NLT L+   ++S  
Sbjct: 141 NLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199

Query: 64  ----------------------NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGN 101
                                 N LSG +P  I  LTSL +LDL  N   G    SSLGN
Sbjct: 200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI-PSSLGN 258

Query: 102 HSNLEFFMLSLVNNTLEVETENWL-PTSQLKVLHLRNCNLNGTLGFLQKQ-HDLKSLDLS 159
             NL++  L L  N L       +    +L  L L + +L+G +  L  Q  +L+ L L 
Sbjct: 259 LKNLQY--LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316

Query: 160 HNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQN 219
            N   G  P  L     +L+VL+L +N F+G +  +  K + L  LD+S+N+ TG +P+ 
Sbjct: 317 SNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Query: 220 M--STILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLW 277
           +  S  L KL+   +  N  EG I  S+   + LR + L  N FSGEL +   T    ++
Sbjct: 376 LCSSGNLFKLI---LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVY 431

Query: 278 LLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVG 337
            LD+S+N+  G+++ +  ++  L  LSL  N F G + + F S    L+ LD+S N+  G
Sbjct: 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK--RLENLDLSRNQFSG 489

Query: 338 QIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
            +P  +G+ S L  L +S+N L G IP +L + + L  LD+S N LS
Sbjct: 490 AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  138 bits (349), Expect = 1e-35
 Identities = 130/404 (32%), Positives = 193/404 (47%), Gaps = 35/404 (8%)

Query: 6   NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQ 65
           +L+ L+LS     GS+    I    NL  L+L  N + G +P  + + + LKV  +  N 
Sbjct: 119 SLRYLNLSNNNFTGSIPRGSI---PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175

Query: 66  LSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWL 125
           L G +P+ + +LTSL++L L+ N   G      LG   +L++  L   N + E+  E   
Sbjct: 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234

Query: 126 PTSQLKVLHLRNCNLNG----TLGFLQKQH---------------------DLKSLDLSH 160
            TS L  L L   NL G    +LG L+                         L SLDLS 
Sbjct: 235 LTS-LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293

Query: 161 NKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNM 220
           N L G  P  ++Q    LE+L L +N+FTG + ++ + L  L  L + SN F+G +P+N+
Sbjct: 294 NSLSGEIPELVIQLQN-LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352

Query: 221 STILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLD 280
                 L  LD+S N   G I   +    +L  L L  N   GE+    L  C SL  + 
Sbjct: 353 GK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI-PKSLGACRSLRRVR 410

Query: 281 LSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIP 340
           L  NSF G++  +F  L  + +L + NNN  GRI++       SLQ+L ++ NK  G +P
Sbjct: 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP-SLQMLSLARNKFFGGLP 469

Query: 341 SWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
              G+   L  L +S+N   G +P +L +L  L  L +SEN LS
Sbjct: 470 DSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  133 bits (336), Expect = 5e-34
 Identities = 123/353 (34%), Positives = 183/353 (51%), Gaps = 12/353 (3%)

Query: 35  LNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLT-SLQYLDLSDNYFQGI 93
           ++L G  I G +   +  L  ++   +S+NQLSG +P  I + + SL+YL+LS+N F G 
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 94  FYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPT-SQLKVLHLRNCNLNGTL-GFLQKQH 151
                 G+  NLE   L L NN L  E  N + + S LKVL L    L G +   L    
Sbjct: 134 I---PRGSIPNLE--TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188

Query: 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS 211
            L+ L L+ N+LVG  P  L Q  + L+ + L  N+ +G +      L  L+HLD+  N+
Sbjct: 189 SLEFLTLASNQLVGQIPRELGQMKS-LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247

Query: 212 FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLT 271
            TG +P ++   L+ L YL + +NK  G I  SI  ++ L  LDLS N  SGE+   L+ 
Sbjct: 248 LTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVI 305

Query: 272 GCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDIS 331
              +L +L L  N+F G++     +L +L  L L +N FSG I    L    +L VLD+S
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN-LGKHNNLTVLDLS 364

Query: 332 NNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
            N L G+IP  + +  +L  L +  N LEG IP  L    +L  + + +N+ S
Sbjct: 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  126 bits (319), Expect = 8e-32
 Identities = 116/367 (31%), Positives = 177/367 (48%), Gaps = 21/367 (5%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L   KNL+ L L    ++G +    I  L+ LI L+L  N++ G +P+ +  L  L++  
Sbjct: 256 LGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           + SN  +G +P  + SL  LQ L L  N F G     +LG H+NL    LS  N T E+ 
Sbjct: 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI-PKNLGKHNNLTVLDLSTNNLTGEI- 372

Query: 121 TENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLE 179
            E    +  L  L L + +L G +   L     L+ + L  N   G  P       TKL 
Sbjct: 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP----SEFTKLP 428

Query: 180 V---LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNK 236
           +   L ++NN+  G +      +  L  L ++ N F G LP +  +  ++L  LD+S+N+
Sbjct: 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS--KRLENLDLSRNQ 486

Query: 237 FEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMN 296
           F G++   +  + +L  L LS N+ SGE+   L + C  L  LDLSHN   GQ+   F  
Sbjct: 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL-SSCKKLVSLDLSHNQLSGQIPASFSE 545

Query: 297 LTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSK 356
           +  L  L L  N  SG I    L +  SL  ++IS+N L G +P      S+ A L ++ 
Sbjct: 546 MPVLSQLDLSQNQLSGEIPKN-LGNVESLVQVNISHNHLHGSLP------STGAFLAINA 598

Query: 357 NLLEGNI 363
           + + GNI
Sbjct: 599 SAVAGNI 605

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  122 bits (307), Expect = 4e-30
 Identities = 114/380 (30%), Positives = 190/380 (50%), Gaps = 11/380 (2%)

Query: 7   LKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQL 66
           ++ ++LS   ++G + +       +L  LNL  N   G +P+   ++  L+   +S+N L
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNML 152

Query: 67  SGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWL- 125
           SG +P+ I S +SL+ LDL  N   G     SL N ++LEF  L+L +N L  +    L 
Sbjct: 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEF--LTLASNQLVGQIPRELG 209

Query: 126 PTSQLKVLHLRNCNLNGTLGF-LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLT 184
               LK ++L   NL+G + + +     L  LDL +N L G  P+  L +   L+ L L 
Sbjct: 210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLY 268

Query: 185 NNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSS 244
            N  +G +  S   L  L  LD+S NS +G +P+ +   LQ L  L +  N F G I  +
Sbjct: 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGKIPVA 327

Query: 245 ISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLS 304
           ++ +  L+ L L  N+FSGE+   L     +L +LDLS N+  G++     +   L  L 
Sbjct: 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386

Query: 305 LDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIP 364
           L +N+  G I    L + RSL+ + + +N   G++PS       +  L +S N L+G I 
Sbjct: 387 LFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN 445

Query: 365 VQLKNLEALEILDVSENNLS 384
            +  ++ +L++L ++ N   
Sbjct: 446 SRKWDMPSLQMLSLARNKFF 465

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  113 bits (283), Expect = 5e-27
 Identities = 81/282 (28%), Positives = 135/282 (47%), Gaps = 28/282 (9%)

Query: 127 TSQLKVLHLRNCNLNGTLGFLQKQHD-LKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTN 185
           +S++  + L   N++G +     +   +++++LS+N+L G  P  +   ++ L  L L+N
Sbjct: 68  SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127

Query: 186 NSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSI 245
           N+FTGS  +    +  L  LD+S+N  +G +P ++ +    L  LD+  N   G I +S+
Sbjct: 128 NNFTGS--IPRGSIPNLETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVGKIPNSL 184

Query: 246 SEMKDLRFLDLSRNQFSGELSAPL-----------------------LTGCFSLWLLDLS 282
           + +  L FL L+ NQ  G++   L                       + G  SL  LDL 
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244

Query: 283 HNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSW 342
           +N+  G +     NL  L +L L  N  SG I      S + L  LD+S+N L G+IP  
Sbjct: 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPEL 303

Query: 343 IGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
           +    +L +L +  N   G IPV L +L  L++L +  N  S
Sbjct: 304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.6 bits (160), Expect = 1e-11
 Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 9   ALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSG 68
            L L   G+ G + N  I +L++L  +NL GN+I G +P  L ++T L+V  +S N  +G
Sbjct: 422 GLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480

Query: 69  SLPSVIASLTSLQYLDLSDNYFQG 92
           S+P  +  LTSL+ L+L+ N   G
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 83/300 (27%), Positives = 116/300 (38%), Gaps = 47/300 (15%)

Query: 28  ELKNLIELNLEGNAI-EGPLPQCLKNLTR---LKVFGISSNQLSGSLPSVIA------SL 77
           +L  L  L LEGN + E         L     LK   +S N+       + +        
Sbjct: 21  KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80

Query: 78  TSLQYLDLSDNYFQ--GIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWL------PTSQ 129
             LQ LDLSDN     G   L SL   S+L+   L L NN L       L          
Sbjct: 81  CGLQELDLSDNALGPDGCGVLESLLRSSSLQ--ELKLNNNGLGDRGLRLLAKGLKDLPPA 138

Query: 130 LKVLHLRNCNLNG-----TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQ---HNTKLEVL 181
           L+ L L    L G         L+   DLK L+L++N +  +    L +    N  LEVL
Sbjct: 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVL 198

Query: 182 RLTNNSFT--GSLQLSN--SKLDFLHHLDISSNSFTGR----LPQNMSTILQKLVYLDMS 233
            L NN  T  G+  L+   + L  L  L++  N+ T      L   + +    L+ L +S
Sbjct: 199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258

Query: 234 KNKFE----GSISSSISEMKDLRFLDLSRNQFSGE---LSAPLLTG----CFSLWLLDLS 282
            N         ++  ++E + L  LDL  N+F  E   L A  L        SLW+ D S
Sbjct: 259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 303 LSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGN 362
           L LDN    G I N  +S  R LQ +++S N + G IP  +G+ +SL +L +S N   G+
Sbjct: 423 LGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 363 IPVQLKNLEALEILDVSENNLS 384
           IP  L  L +L IL+++ N+LS
Sbjct: 482 IPESLGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGS 240
           L L N    G +    SKL  L  +++S NS  G +P ++ +I   L  LD+S N F GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGS 481

Query: 241 ISSSISEMKDLRFLDLSRNQFSGELSAPL 269
           I  S+ ++  LR L+L+ N  SG + A L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289
           L +      G I + IS+++ L+ ++LS N   G +   L +   SL +LDLS+NSF G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGS 481

Query: 290 VSPKFMNLTQLGWLSLDNNNFSGRI 314
           +      LT L  L+L+ N+ SGR+
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 279 LDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQ 338
           L L +    G +      L  L  ++L  N+  G I      S  SL+VLD+S N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGS 481

Query: 339 IPSWIGNFSSLALLTVSKNLLEGNIPVQL 367
           IP  +G  +SL +L ++ N L G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 133 LHLRNCNLNGTLGF-LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGS 191
           L L N  L G +   + K   L+S++LS N + G+ P   L   T LEVL L+ NSF GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGS 481

Query: 192 LQLSNSKLDFLHHLDISSNSFTGRLP 217
           +  S  +L  L  L+++ NS +GR+P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 63/289 (21%), Positives = 108/289 (37%), Gaps = 52/289 (17%)

Query: 128 SQLKVLHLRNCNLNGTLG-----FLQKQHDLKSLDLSHNKLVGSFPAWL-----LQHNTK 177
             L+VL L    L           L+ Q  LK L LS N+              L     
Sbjct: 23  LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82

Query: 178 LEVLRLTNNSFTGSLQ---LSNSKLDFLHHLDISSNSFTGRLPQNMSTILQ----KLVYL 230
           L+ L L++N+          S  +   L  L +++N    R  + ++  L+     L  L
Sbjct: 83  LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142

Query: 231 DMSKNKFEG----SISSSISEMKDLRFLDLSRNQFSGELSAPL---LTGCFSLWLLDLSH 283
            + +N+ EG    +++ ++   +DL+ L+L+ N         L   L    +L +LDL++
Sbjct: 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN 202

Query: 284 NSF----CGQVSPKFMNLTQLGWLSLDNNNFSGR----ISNGFLSSARSLQVLDISNNKL 335
           N         ++    +L  L  L+L +NN +      +++  LS   SL  L +S N  
Sbjct: 203 NGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND- 261

Query: 336 VGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
                  I +  +  L  V            L   E+L  LD+  N   
Sbjct: 262 -------ITDDGAKDLAEV------------LAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 9/210 (4%)

Query: 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
           ++L  L L + S   SL  S + L+ L    +  N    R   +    L  L  LD+  N
Sbjct: 67  SRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNN 126

Query: 236 KFEGSISSSISEMKD-LRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKF 294
                I   I  +K  L+ LDLS N+     S   L    +L  LDLS N     +    
Sbjct: 127 NIT-DIPPLIGLLKSNLKELDLSDNKIESLPSP--LRNLPNLKNLDLSFNDLS-DLPKLL 182

Query: 295 MNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTV 354
            NL+ L  L L  N  S  +    +    +L+ LD+SNN ++ ++ S + N  +L+ L +
Sbjct: 183 SNLSNLNNLDLSGNKIS-DLPP-EIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLEL 239

Query: 355 SKNLLEGNIPVQLKNLEALEILDVSENNLS 384
           S N LE ++P  + NL  LE LD+S N +S
Sbjct: 240 SNNKLE-DLPESIGNLSNLETLDLSNNQIS 268

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 21/77 (27%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           ++K ++L++++LS   I G++    +  + +L  L+L  N+  G +P+ L  LT L++  
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 61  ISSNQLSGSLPSVIASL 77
           ++ N LSG +P+ +   
Sbjct: 497 LNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 91/333 (27%), Positives = 129/333 (38%), Gaps = 17/333 (5%)

Query: 52  NLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLS 111
           +L+RL    + S     SL      L  L    L  N  +    +S L   +NL   +  
Sbjct: 65  SLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTS-LDL 123

Query: 112 LVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWL 171
             NN  ++     L  S LK L L +  +      L+   +LK+LDLS N L       L
Sbjct: 124 DNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDL--PKL 181

Query: 172 LQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLD 231
           L + + L  L L+ N  +  L      L  L  LD+S+NS    L  ++S  L+ L  L+
Sbjct: 182 LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN-LKNLSGLE 238

Query: 232 MSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVS 291
           +S NK E     SI  + +L  LDLS NQ S   S   L    +L  LDLS NS     S
Sbjct: 239 LSNNKLEDLP-ESIGNLSNLETLDLSNNQIS---SISSLGSLTNLRELDLSGNSL----S 290

Query: 292 PKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLAL 351
                +  L  L     N    +    L     L   +I +N      P  +    SL  
Sbjct: 291 NALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGET-SSPEALSILESLNN 349

Query: 352 LTVSKNLLEGNIPVQ--LKNLEALEILDVSENN 382
           L    N L+ +   +  +KN  A+  L      
Sbjct: 350 LWTLDNALDESNLNRYIVKNPNAIGSLLDLVKK 382

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 22/60 (36%), Positives = 28/60 (46%)

Query: 31 NLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYF 90
          NL  L+L  N +        K L  LKV  +S N L+   P   + L SL+ LDLS N  
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.94
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.85
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.82
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.71
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.67
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.53
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.47
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.44
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.4
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.4
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.31
KOG4341	483	consensus F-box protein containing LRR [General fu	99.26
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.26
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.24
KOG4341	483	consensus F-box protein containing LRR [General fu	99.22
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.17
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.12
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.1
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.09
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.87
PLN03150	623	hypothetical protein; Provisional	98.84
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.81
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.77
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.74
PLN03150	623	hypothetical protein; Provisional	98.72
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.71
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.67
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.66
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.63
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.56
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.54
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.5
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.47
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.45
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.43
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.3
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.29
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.25
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.25
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.11
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.09
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.09
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.93
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.82
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.81
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.59
PRK15386	426	type III secretion protein GogB; Provisional	97.52
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.46
PRK15386	426	type III secretion protein GogB; Provisional	97.43
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.08
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.0
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.4
KOG4308	478	consensus LRR-containing protein [Function unknown	96.35
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.88
KOG4308	478	consensus LRR-containing protein [Function unknown	95.69
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.68
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.58
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.93
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.76
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.01
smart00370	26	LRR Leucine-rich repeats, outliers.	90.01
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.7
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	86.1
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	83.03

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.6e-39  Score=323.86  Aligned_cols=375  Identities=33%  Similarity=0.507  Sum_probs=221.1

Q ss_pred             CCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccE
Q 043452            3 KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY   82 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   82 (384)
                      .+++|++|++++|.+++.+ +..++.+++|++|++++|.+.+..|..+.++++|++|++++|.+....|..+.++++|++
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEI-PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             ccCCCCEEECcCCcccccC-ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence            4677888888888776544 566777888888888888777677777777888888888877777677777777777777


Q ss_pred             EECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC-ccccccccCCCCeEeccCC
Q 043452           83 LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHN  161 (384)
Q Consensus        83 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~  161 (384)
                      |++++|.+.+..+ ..+.++++|++|+++.+.... ..+..+..+++|++|+++++.+.+ ++..+..+++|+.|++++|
T Consensus       217 L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  294 (968)
T PLN00113        217 IYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN  294 (968)
T ss_pred             EECcCCccCCcCC-hhHhcCCCCCEEECcCceecc-ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence            7777777665433 345667777777776554321 223345555566666666555543 4444555555555555555


Q ss_pred             ccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEcc--------
Q 043452          162 KLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMS--------  233 (384)
Q Consensus       162 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~--------  233 (384)
                      .+.+.+|..+ ..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.. +++|+.|+++        
T Consensus       295 ~l~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-~~~L~~L~Ls~n~l~~~~  372 (968)
T PLN00113        295 SLSGEIPELV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEI  372 (968)
T ss_pred             eeccCCChhH-cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC-CCCCcEEECCCCeeEeeC
Confidence            5544444333 24455555555555444444444444444444444444444333332222 3333333333        


Q ss_pred             ----------------CCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccccccccc
Q 043452          234 ----------------KNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNL  297 (384)
Q Consensus       234 ----------------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  297 (384)
                                      +|.+.+..+..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+..+..+..+
T Consensus       373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  451 (968)
T PLN00113        373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS-EFTKLPLVYFLDISNNNLQGRINSRKWDM  451 (968)
T ss_pred             ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh-hHhcCCCCCEEECcCCcccCccChhhccC
Confidence                            3333333344444455555555555555433222 23334444444444444443333333333


Q ss_pred             -----------------------CCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEc
Q 043452          298 -----------------------TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTV  354 (384)
Q Consensus       298 -----------------------~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  354 (384)
                                             ++|+.|++++|.+++..+. .+..+++|+.|++++|.+.+..|+.+..+++|+.|++
T Consensus       452 ~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  530 (968)
T PLN00113        452 PSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR-KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL  530 (968)
T ss_pred             CCCcEEECcCceeeeecCcccccccceEEECcCCccCCccCh-hhhhhhccCEEECcCCcceeeCChHHcCccCCCEEEC
Confidence                                   4455555555555533332 3445567777777777777777777777788888888


Q ss_pred             cCcccccccccccccCCCCceEeCcCCCCC
Q 043452          355 SKNLLEGNIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      ++|++++..|..+..+++|+.|++++|+++
T Consensus       531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  560 (968)
T PLN00113        531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLS  560 (968)
T ss_pred             CCCcccccCChhHhCcccCCEEECCCCccc
Confidence            888877777777777888888888887764

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.3e-39  Score=323.08  Aligned_cols=375  Identities=33%  Similarity=0.474  Sum_probs=271.4

Q ss_pred             CCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCcc
Q 043452            2 AKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQ   81 (384)
Q Consensus         2 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~   81 (384)
                      .++++|++|++++|.+++.+ +..+.++++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..+.++++|+
T Consensus       185 ~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  263 (968)
T PLN00113        185 TNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ  263 (968)
T ss_pred             hhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence            46778888888888887555 56778888888888888888777888888888888888888888777788888888888


Q ss_pred             EEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC-ccccccccCCCCeEeccC
Q 043452           82 YLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSH  160 (384)
Q Consensus        82 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~  160 (384)
                      +|++++|.+.+..+ ..+..+++|++|+++.+.... ..+..+..+++|+.|++++|.+.+ .+..+..+++|+.|++++
T Consensus       264 ~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  341 (968)
T PLN00113        264 YLFLYQNKLSGPIP-PSIFSLQKLISLDLSDNSLSG-EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS  341 (968)
T ss_pred             EEECcCCeeeccCc-hhHhhccCcCEEECcCCeecc-CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC
Confidence            88888887765543 345667777777776554322 233344566677777777666655 555566666777777776


Q ss_pred             CccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccC------------------------ccccCCceEeeecCccCCCc
Q 043452          161 NKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSN------------------------SKLDFLHHLDISSNSFTGRL  216 (384)
Q Consensus       161 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------------------~~~~~L~~L~l~~~~~~~~~  216 (384)
                      |.+.+.+|..+ ..+++|+.|++++|.+....+..+                        ..+++|+.|++++|.+.+..
T Consensus       342 n~l~~~~p~~l-~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~  420 (968)
T PLN00113        342 NKFSGEIPKNL-GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL  420 (968)
T ss_pred             CCCcCcCChHH-hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence            66665555444 355666666666665554444333                        44455555555555554333


Q ss_pred             chhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccc
Q 043452          217 PQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMN  296 (384)
Q Consensus       217 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  296 (384)
                      +..+. .++.|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+  ..++|+.|++++|.+.+..+..+..
T Consensus       421 p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~--~~~~L~~L~ls~n~l~~~~~~~~~~  497 (968)
T PLN00113        421 PSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF--GSKRLENLDLSRNQFSGAVPRKLGS  497 (968)
T ss_pred             ChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc--ccccceEEECcCCccCCccChhhhh
Confidence            33332 25555555665555555545445556666666666666653333221  3578889999999998888888889


Q ss_pred             cCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceE
Q 043452          297 LTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEIL  376 (384)
Q Consensus       297 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  376 (384)
                      +++|+.|++++|.+.+.++.. +..+++|+.|++++|.+++..|..+..+++|+.|++++|++.+..|..+..+++|+.+
T Consensus       498 l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l  576 (968)
T PLN00113        498 LSELMQLKLSENKLSGEIPDE-LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV  576 (968)
T ss_pred             hhccCEEECcCCcceeeCChH-HcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence            999999999999998666654 5667999999999999999999999999999999999999999999999999999999


Q ss_pred             eCcCCCCC
Q 043452          377 DVSENNLS  384 (384)
Q Consensus       377 ~l~~~~~s  384 (384)
                      ++++|+++
T Consensus       577 ~ls~N~l~  584 (968)
T PLN00113        577 NISHNHLH  584 (968)
T ss_pred             eccCCcce
Confidence            99999874

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-38  Score=274.92  Aligned_cols=344  Identities=26%  Similarity=0.332  Sum_probs=192.4

Q ss_pred             cEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCC
Q 043452            8 KALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSD   87 (384)
Q Consensus         8 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~   87 (384)
                      ++|++++|.+. .+....|.++++|+.+++.+|.++ .+|+......+|+.|++.+|.++.+..+.++.++.|+.|+++.
T Consensus        81 ~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   81 QTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            34666666555 454555566666666666666665 4555555555566666666666655555566666666666666


Q ss_pred             CccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC-ccccccccCCCCeEeccCCccCCC
Q 043452           88 NYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGS  166 (384)
Q Consensus        88 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~  166 (384)
                      |.++.. +...+..-                         .++++|++++|.++. -...|..+.+|..|.|+.|.++ .
T Consensus       159 N~is~i-~~~sfp~~-------------------------~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-t  211 (873)
T KOG4194|consen  159 NLISEI-PKPSFPAK-------------------------VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-T  211 (873)
T ss_pred             chhhcc-cCCCCCCC-------------------------CCceEEeeccccccccccccccccchheeeecccCccc-c
Confidence            554422 22333333                         455666666665555 2334555555666666666555 5


Q ss_pred             cHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhcc
Q 043452          167 FPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSIS  246 (384)
Q Consensus       167 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  246 (384)
                      +|...|+.+++|+.|++.+|.+...-...|..+++|+.+.+.+|++. ......+.++.++++|++..|++......++.
T Consensus       212 Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf  290 (873)
T KOG4194|consen  212 LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF  290 (873)
T ss_pred             cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhccccc
Confidence            55555555666666666666555444555555666666666666555 44444444455666666666655555555555


Q ss_pred             CCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccce
Q 043452          247 EMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQ  326 (384)
Q Consensus       247 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~  326 (384)
                      .+..|+.|+++.|.|. .+....+..+++|++|+++.|.++...+.+|..+..|++|+++.|.++ .+....|..+.+|+
T Consensus       291 gLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~  368 (873)
T KOG4194|consen  291 GLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLH  368 (873)
T ss_pred             ccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhh
Confidence            5566666666666554 333334444556666666666665555555555555666666666555 44445555555666


Q ss_pred             EEEcCCCccc---cccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452          327 VLDISNNKLV---GQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL  383 (384)
Q Consensus       327 ~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  383 (384)
                      +|+++.|.+.   +....+|.++++|+.|.+.||++..+.-++|..+++|+.||+.+|.|
T Consensus       369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI  428 (873)
T ss_pred             hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence            6666665543   23444555566666666666665554545555666666666665554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-35  Score=254.63  Aligned_cols=347  Identities=23%  Similarity=0.250  Sum_probs=291.1

Q ss_pred             CCCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCc
Q 043452            1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSL   80 (384)
Q Consensus         1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L   80 (384)
                      |..+++|+.+++..|.++ .+ |...+...+|+.|++.+|.+..+-...+..++.|+.||++.|.+..+-...+..-.++
T Consensus        98 f~nl~nLq~v~l~~N~Lt-~I-P~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni  175 (873)
T KOG4194|consen   98 FYNLPNLQEVNLNKNELT-RI-PRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNI  175 (873)
T ss_pred             HhcCCcceeeeeccchhh-hc-ccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence            457899999999999987 77 5666677789999999999987777889999999999999999986666677777899


Q ss_pred             cEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCcc-ccccccCCCCeEecc
Q 043452           81 QYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLS  159 (384)
Q Consensus        81 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~  159 (384)
                      ++|+++.|+++..                          ..+.|..+.+|..|.++.|.++.++ ..|..+++|+.|+|.
T Consensus       176 ~~L~La~N~It~l--------------------------~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn  229 (873)
T KOG4194|consen  176 KKLNLASNRITTL--------------------------ETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN  229 (873)
T ss_pred             eEEeecccccccc--------------------------ccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence            9999999998865                          2345666678888889999988855 456679999999999


Q ss_pred             CCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCC
Q 043452          160 HNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEG  239 (384)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  239 (384)
                      .|.+. ......|.++++|+.|.+-+|.+......+|..+.++++|+++.|++. .+......+++.|+.|++++|.|..
T Consensus       230 rN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~r  307 (873)
T KOG4194|consen  230 RNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQR  307 (873)
T ss_pred             cccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhhe
Confidence            98874 333445778999999999999998888888889999999999999988 5555444558999999999999988


Q ss_pred             ccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccc--hh
Q 043452          240 SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRIS--NG  317 (384)
Q Consensus       240 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~--~~  317 (384)
                      .-.+.++.+++|+.|+++.|.++ ......|..++.|++|++++|.++.....+|..+.+|++|++++|.+...+.  ..
T Consensus       308 ih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~  386 (873)
T KOG4194|consen  308 IHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV  386 (873)
T ss_pred             eecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh
Confidence            88888899999999999999998 6667777888999999999999887767778888999999999998764333  34


Q ss_pred             hhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCc
Q 043452          318 FLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVS  379 (384)
Q Consensus       318 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  379 (384)
                      .+.+++.|++|++.+|++..+...||.++.+|+.|+|.+|.+-.+-+.+|.++ .|++|.+.
T Consensus       387 ~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  387 AFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             hhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            56778999999999999987777899999999999999999888888999888 88887654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=2.5e-32  Score=240.03  Aligned_cols=367  Identities=23%  Similarity=0.292  Sum_probs=291.4

Q ss_pred             CCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccE
Q 043452            3 KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY   82 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   82 (384)
                      -+|-.|-+++++|.++|+-.|.....+.++++|.+..+++. .+|..++.+.+|+.|.+.++.+. .+...++.+|.||.
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS   82 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence            35778889999999998777888899999999999999998 78999999999999999999988 66778889999999


Q ss_pred             EECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccc-cccccCCCCeEeccCC
Q 043452           83 LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLG-FLQKQHDLKSLDLSHN  161 (384)
Q Consensus        83 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~  161 (384)
                      +.+.+|++........+.++..|..|+++.+...  ..+..+..-.++-.|+++.+.+..+|. .+-++..|-.|++++|
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~--EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR--EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh--hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            9999998866655567778888888888755432  233445555677788888888877664 4557777888888888


Q ss_pred             ccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccC-CCcchhHHHhccCCcEEEccCCcCCCc
Q 043452          162 KLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFT-GRLPQNMSTILQKLVYLDMSKNKFEGS  240 (384)
Q Consensus       162 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~  240 (384)
                      .+. .+|+.+ ..+.+|++|.+++|.+.......+..+++|+.|.+++.+-+ ..+|.++- .+.+|+.++++.|.+. .
T Consensus       161 rLe-~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld-~l~NL~dvDlS~N~Lp-~  236 (1255)
T KOG0444|consen  161 RLE-MLPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD-DLHNLRDVDLSENNLP-I  236 (1255)
T ss_pred             hhh-hcCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh-hhhhhhhccccccCCC-c
Confidence            775 555554 46778888888887766444444455667777888877643 24455443 4789999999998887 6


Q ss_pred             cchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhh
Q 043452          241 ISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLS  320 (384)
Q Consensus       241 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~  320 (384)
                      .|..+..+++|+.|++++|+++. ... -.....+|+.|+++.|+++ ..|.++++++.|+.|++.+|+++-...+.-..
T Consensus       237 vPecly~l~~LrrLNLS~N~ite-L~~-~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG  313 (1255)
T KOG0444|consen  237 VPECLYKLRNLRRLNLSGNKITE-LNM-TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG  313 (1255)
T ss_pred             chHHHhhhhhhheeccCcCceee-eec-cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchh
Confidence            78888899999999999999873 211 1123568999999999998 67888999999999999999876444444455


Q ss_pred             ccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCC
Q 043452          321 SARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENN  382 (384)
Q Consensus       321 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  382 (384)
                      .+.+|+.+..++|.+. .+|+.++.|..|+.|.|+.|++. ..|++|.-++.|+.||+++|+
T Consensus       314 KL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  314 KLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             hhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence            6688999999998887 89999999999999999999998 689999999999999999986

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.95  E-value=1.6e-30  Score=216.86  Aligned_cols=364  Identities=26%  Similarity=0.337  Sum_probs=232.6

Q ss_pred             CCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccE
Q 043452            3 KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY   82 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   82 (384)
                      .+..|.+|.+.++..+ +. +.+++++..++.++.+++++. .+|+.++.+++|+.++++++.+. ..++.++++-.+..
T Consensus        66 nL~~l~vl~~~~n~l~-~l-p~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~d  141 (565)
T KOG0472|consen   66 NLACLTVLNVHDNKLS-QL-PAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLED  141 (565)
T ss_pred             cccceeEEEeccchhh-hC-CHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhh
Confidence            3455666777776665 44 455666667777777777666 56666666777777777766666 55566666666666


Q ss_pred             EECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCc
Q 043452           83 LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNK  162 (384)
Q Consensus        83 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  162 (384)
                      ++..+|.+++..  ..+..+.++..+.+.++...  .......+++.|++++...+-+..+|..++.+.+|.-|++..|+
T Consensus       142 l~~~~N~i~slp--~~~~~~~~l~~l~~~~n~l~--~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk  217 (565)
T KOG0472|consen  142 LDATNNQISSLP--EDMVNLSKLSKLDLEGNKLK--ALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK  217 (565)
T ss_pred             hhccccccccCc--hHHHHHHHHHHhhccccchh--hCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc
Confidence            666666665442  34555556665555543322  12222333667777777777776677777777777777777777


Q ss_pred             cCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccc
Q 043452          163 LVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSIS  242 (384)
Q Consensus       163 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  242 (384)
                      +. .+|.  |.+|..|++++++.|++.....+...+++++..||+..|++. ++|..++. +.+|.+|++++|.++ ..+
T Consensus       218 i~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp  291 (565)
T KOG0472|consen  218 IR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLP  291 (565)
T ss_pred             cc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc-cCC
Confidence            65 5552  456777777777777776555666667777777777777776 67766665 667777777777776 445


Q ss_pred             hhccCCCCCcEEEeecccccc-----------------------------------------------------------
Q 043452          243 SSISEMKDLRFLDLSRNQFSG-----------------------------------------------------------  263 (384)
Q Consensus       243 ~~~~~~~~L~~L~l~~~~~~~-----------------------------------------------------------  263 (384)
                      ..++++ +|+.|.+.||++..                                                           
T Consensus       292 ~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s  370 (565)
T KOG0472|consen  292 YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVS  370 (565)
T ss_pred             cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccc
Confidence            566666 66777666665530                                                           


Q ss_pred             -----ccccchhccCC--cceEEEccCCcccc-----------------------cccccccccCCcCeEeCCCCcCCcc
Q 043452          264 -----ELSAPLLTGCF--SLWLLDLSHNSFCG-----------------------QVSPKFMNLTQLGWLSLDNNNFSGR  313 (384)
Q Consensus       264 -----~~~~~~~~~~~--~L~~L~l~~~~~~~-----------------------~~~~~~~~~~~L~~l~l~~~~~~~~  313 (384)
                           ..+.+.|....  -...++++.|++..                       ..+..++.+++|.-|++++|.+. .
T Consensus       371 ~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~  449 (565)
T KOG0472|consen  371 DKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-D  449 (565)
T ss_pred             ccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-h
Confidence                 11111111111  13334444443321                       12233445667777777777665 5


Q ss_pred             cchhhhhccccceEEEcCCCccc-----------------------cccchhhhccCCccEEEccCcccccccccccccC
Q 043452          314 ISNGFLSSARSLQVLDISNNKLV-----------------------GQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNL  370 (384)
Q Consensus       314 ~~~~~~~~~~~L~~L~l~~~~~~-----------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  370 (384)
                      ++..++.- ..|+.++++.|.+.                       ..-+..+.++++|..||+.+|.+. .+|..+++|
T Consensus       450 LP~e~~~l-v~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm  527 (565)
T KOG0472|consen  450 LPEEMGSL-VRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM  527 (565)
T ss_pred             cchhhhhh-hhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence            55544433 45777777766553                       233344889999999999999998 788899999


Q ss_pred             CCCceEeCcCCCCC
Q 043452          371 EALEILDVSENNLS  384 (384)
Q Consensus       371 ~~L~~l~l~~~~~s  384 (384)
                      .+|+.|+++||+|.
T Consensus       528 tnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  528 TNLRHLELDGNPFR  541 (565)
T ss_pred             cceeEEEecCCccC
Confidence            99999999999985

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.94  E-value=1.5e-28  Score=216.33  Aligned_cols=343  Identities=23%  Similarity=0.314  Sum_probs=253.7

Q ss_pred             cccccEEecCCCccc-cCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhh
Q 043452           29 LKNLIELNLEGNAIE-GPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEF  107 (384)
Q Consensus        29 ~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  107 (384)
                      +|-.+-+++++|.+. +.+|..+.++.+++-|.+..+.+. .+|+.++++++|.+|.+++|++.+..  ..+..++.|+.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh--GELs~Lp~LRs   82 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH--GELSDLPRLRS   82 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh--hhhccchhhHH
Confidence            466788899999998 589999999999999999998888 88999999999999999999987664  56788888888


Q ss_pred             hhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCC
Q 043452          108 FMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNS  187 (384)
Q Consensus       108 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  187 (384)
                      +.+..+.......+..+..+..|..|+++.+.+..+|..+...+++-+|++++|++. .+|...+-.++-|-.|+++.|.
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence            888877777777777777888888888888888888888888888888888888875 7777777777777788888777


Q ss_pred             CcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCC-CccchhccCCCCCcEEEeeccccccccc
Q 043452          188 FTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFE-GSISSSISEMKDLRFLDLSRNQFSGELS  266 (384)
Q Consensus       188 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~  266 (384)
                      +. ..+..+.++..|+.|++++|.+...-...+. ..++|+.|.+++..-+ ...|..+..+.+|..++++.|.+. ..+
T Consensus       162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP  238 (1255)
T KOG0444|consen  162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP  238 (1255)
T ss_pred             hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence            76 4444566777788888888776532222221 2445666677665432 345666677777888888887774 333


Q ss_pred             cchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccc-cccchhhhc
Q 043452          267 APLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV-GQIPSWIGN  345 (384)
Q Consensus       267 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~  345 (384)
                       +...++++|+.|++++|.++.. ........+|++|+++.|+++ ..++. ...++.|+.|...+|.++ +.+|..++.
T Consensus       239 -ecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~a-vcKL~kL~kLy~n~NkL~FeGiPSGIGK  314 (1255)
T KOG0444|consen  239 -ECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDA-VCKLTKLTKLYANNNKLTFEGIPSGIGK  314 (1255)
T ss_pred             -HHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHH-HhhhHHHHHHHhccCcccccCCccchhh
Confidence             3334577788888888777642 233344567777888888776 44444 344577777777777554 246677777


Q ss_pred             cCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452          346 FSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL  383 (384)
Q Consensus       346 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  383 (384)
                      +..|+.+...+|.+. ..|+.+..|++|++|.++.|.+
T Consensus       315 L~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  315 LIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             hhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence            777777777777776 6777788888888888877753

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.92  E-value=5.6e-27  Score=214.61  Aligned_cols=358  Identities=28%  Similarity=0.361  Sum_probs=196.5

Q ss_pred             cccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEEC
Q 043452            6 NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDL   85 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l   85 (384)
                      +|+.|+++++.+. .. +..+...++|+.|+++.|.+. ..|.+...+.+|+++++..+.+. ..|..+..+++|+.|++
T Consensus        46 ~L~~l~lsnn~~~-~f-p~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ldl  121 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SF-PIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDL  121 (1081)
T ss_pred             eeEEeeccccccc-cC-CchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhccccccc
Confidence            4778888887775 44 455666666666666666555 45556666666666666665555 56666666666666666


Q ss_pred             CCCccccccccccCCCCCchh-------------------hh----------------------hhhcccCceeeccCCC
Q 043452           86 SDNYFQGIFYLSSLGNHSNLE-------------------FF----------------------MLSLVNNTLEVETENW  124 (384)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~L~-------------------~l----------------------~l~~~~~~~~~~~~~~  124 (384)
                      +.|.+....  ..+..++.+.                   .+                      ++.++...    ...+
T Consensus       122 S~N~f~~~P--l~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~----~~dl  195 (1081)
T KOG0618|consen  122 SFNHFGPIP--LVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME----VLDL  195 (1081)
T ss_pred             chhccCCCc--hhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh----hhhh
Confidence            665543221  0111111111                   11                      11111110    0011


Q ss_pred             CCCC--------------------CccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcC
Q 043452          125 LPTS--------------------QLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLT  184 (384)
Q Consensus       125 ~~~~--------------------~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  184 (384)
                      ..++                    +++.|+...|.+... ....-..+|+.++++.+.++ .+|.++ ..+.+|+.+...
T Consensus       196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~-~~~p~p~nl~~~dis~n~l~-~lp~wi-~~~~nle~l~~n  272 (1081)
T KOG0618|consen  196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTL-DVHPVPLNLQYLDISHNNLS-NLPEWI-GACANLEALNAN  272 (1081)
T ss_pred             hhccchhhhhhhhcccceEEecCcchheeeeccCcceee-ccccccccceeeecchhhhh-cchHHH-HhcccceEeccc
Confidence            1111                    222222222222110 00011134555555555554 445333 355556655555


Q ss_pred             CCCCcC----------------------cccccCccccCCceEeeecCccCCCcchhHHHhcc-CCcEEEccCCcCCCcc
Q 043452          185 NNSFTG----------------------SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQ-KLVYLDMSKNKFEGSI  241 (384)
Q Consensus       185 ~~~~~~----------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~  241 (384)
                      .|.+..                      -.+......++|++|++..|.+. ..|..++.... .++.|+.+.+++....
T Consensus       273 ~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp  351 (1081)
T KOG0618|consen  273 HNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLP  351 (1081)
T ss_pred             chhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccc
Confidence            554431                      22333345666777777777766 45544433222 2555555555554333


Q ss_pred             chhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhc
Q 043452          242 SSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSS  321 (384)
Q Consensus       242 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  321 (384)
                      ...-..++.|+.|++.+|.++ +.....+.+.++|+.|++++|.+.......+.++..|+.|+++||.++ .++.. ...
T Consensus       352 ~~~e~~~~~Lq~LylanN~Lt-d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t-va~  428 (1081)
T KOG0618|consen  352 SYEENNHAALQELYLANNHLT-DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT-VAN  428 (1081)
T ss_pred             cccchhhHHHHHHHHhcCccc-ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH-HHh
Confidence            333334566777777777776 444455566777888888888777666666777777778888887776 45533 445


Q ss_pred             cccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCC
Q 043452          322 ARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENN  382 (384)
Q Consensus       322 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  382 (384)
                      ++.|++|....|++. ..| .+.+++.|+.+|++.|.++.........-|+|++||++||.
T Consensus       429 ~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  429 LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            577777777777776 556 56777777777777777765433333333677777777775

>PLN03210 Resistant to P

Probab=99.92  E-value=2.6e-23  Score=209.32  Aligned_cols=342  Identities=20%  Similarity=0.241  Sum_probs=201.0

Q ss_pred             ccchhhhhccccccEEecCCCcc------ccCCchhhhcCC-CCCEEEeecCcccCccCccccCCCCccEEECCCCcccc
Q 043452           20 SLENQGICELKNLIELNLEGNAI------EGPLPQCLKNLT-RLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQG   92 (384)
Q Consensus        20 ~~~~~~~~~~~~L~~L~l~~~~~------~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   92 (384)
                      .+...+|..+++|+.|.+..+..      ...+|..+..+| +|+.|.+.++.+. ..|..+ ...+|++|++.++.+..
T Consensus       548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~  625 (1153)
T PLN03210        548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK  625 (1153)
T ss_pred             eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc
Confidence            34455566777777776654421      112444454443 4677777666555 455554 45667777777666554


Q ss_pred             ccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCC-CccccccccCCCCeEeccCCccCCCcHHHH
Q 043452           93 IFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLN-GTLGFLQKQHDLKSLDLSHNKLVGSFPAWL  171 (384)
Q Consensus        93 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  171 (384)
                      .+  ..+..+++|+.++++.+......  ..+..+++|+.|++++|... .++..+..+++|+.|++++|.....+|..+
T Consensus       626 L~--~~~~~l~~Lk~L~Ls~~~~l~~i--p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i  701 (1153)
T PLN03210        626 LW--DGVHSLTGLRNIDLRGSKNLKEI--PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI  701 (1153)
T ss_pred             cc--cccccCCCCCEEECCCCCCcCcC--CccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence            32  34456666666666654332221  13555677777777776433 366667777777777777765444555433


Q ss_pred             hhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCC-------ccchh
Q 043452          172 LQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEG-------SISSS  244 (384)
Q Consensus       172 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~  244 (384)
                        .+++|+.|.+++|......+.   ..++|+.|+++++.+. .+|..+  .+++|++|.+.++....       ..+..
T Consensus       702 --~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~  773 (1153)
T PLN03210        702 --NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLM  773 (1153)
T ss_pred             --CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhh
Confidence              567777777777654333221   2356777777777665 444433  25666666666543211       11111


Q ss_pred             ccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhcccc
Q 043452          245 ISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARS  324 (384)
Q Consensus       245 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~  324 (384)
                      ....++|+.|++++|......+.. +.++++|+.|++++|......|... .+++|+.|++++|.....++.    ..++
T Consensus       774 ~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~----~~~n  847 (1153)
T PLN03210        774 TMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD----ISTN  847 (1153)
T ss_pred             hhccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc----cccc
Confidence            223467777777777654344433 4567777777777765444444443 567777777777654322221    1256


Q ss_pred             ceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCC
Q 043452          325 LQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENN  382 (384)
Q Consensus       325 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  382 (384)
                      |+.|++++|.+. .+|..+..+++|+.|++++|......|..+..+++|+.+++++|+
T Consensus       848 L~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        848 ISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            777777777776 567777777777777777775444566666677777777777774

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.90  E-value=9.2e-27  Score=194.59  Aligned_cols=348  Identities=28%  Similarity=0.368  Sum_probs=240.2

Q ss_pred             CCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCcc
Q 043452            2 AKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQ   81 (384)
Q Consensus         2 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~   81 (384)
                      +++-.|..++..+|.++ +. +..+..+.+|..+++.++++.. .|+..-+++.|+.+|..++.++ ..|..++.+..|.
T Consensus       134 ~~~~~l~dl~~~~N~i~-sl-p~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~  209 (565)
T KOG0472|consen  134 GRLLDLEDLDATNNQIS-SL-PEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLE  209 (565)
T ss_pred             HHHhhhhhhhccccccc-cC-chHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhH
Confidence            34556667777777776 55 4567777888888888888873 4444444788888888877776 7777888888888


Q ss_pred             EEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCC
Q 043452           82 YLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHN  161 (384)
Q Consensus        82 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  161 (384)
                      .|++.+|++...   ..|..|+.|.++.+..+.... ...+....++++..|++..+++..+|..+..+.+|..|++++|
T Consensus       210 ~LyL~~Nki~~l---Pef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN  285 (565)
T KOG0472|consen  210 LLYLRRNKIRFL---PEFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN  285 (565)
T ss_pred             HHHhhhcccccC---CCCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCC
Confidence            888888877654   467778888877776544322 1222334667777777777777777777777777777777777


Q ss_pred             ccCCCcHHHHhhhCCCccEEEcCCCCCcC------------------------------------c-----ccccCcccc
Q 043452          162 KLVGSFPAWLLQHNTKLEVLRLTNNSFTG------------------------------------S-----LQLSNSKLD  200 (384)
Q Consensus       162 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------------------------------~-----~~~~~~~~~  200 (384)
                      .++ .+|... +.+ +|+.|-+.+|.+..                                    .     ........-
T Consensus       286 ~is-~Lp~sL-gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i  362 (565)
T KOG0472|consen  286 DIS-SLPYSL-GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAII  362 (565)
T ss_pred             ccc-cCCccc-ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhh
Confidence            776 444444 344 66666666663210                                    0     000111234


Q ss_pred             CCceEeeecCccCCCcchhHHHhcc--CCcEEEccCCcCC-----------------------CccchhccCCCCCcEEE
Q 043452          201 FLHHLDISSNSFTGRLPQNMSTILQ--KLVYLDMSKNKFE-----------------------GSISSSISEMKDLRFLD  255 (384)
Q Consensus       201 ~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~-----------------------~~~~~~~~~~~~L~~L~  255 (384)
                      +.+.|++++-+++ .+|.+++....  -....++++|++.                       ++.+..+..+++|..|+
T Consensus       363 ~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~  441 (565)
T KOG0472|consen  363 TTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLD  441 (565)
T ss_pred             hhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeee
Confidence            5677777777777 67776665332  2566777777553                       24455566678888888


Q ss_pred             eeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcc
Q 043452          256 LSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL  335 (384)
Q Consensus       256 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  335 (384)
                      +++|.+. ..+.+++. ...|+.|+++.|++. ..|........++++-.+++++. .+++.-...+.+|..|++.+|.+
T Consensus       442 L~NN~Ln-~LP~e~~~-lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~-~vd~~~l~nm~nL~tLDL~nNdl  517 (565)
T KOG0472|consen  442 LSNNLLN-DLPEEMGS-LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG-SVDPSGLKNMRNLTTLDLQNNDL  517 (565)
T ss_pred             cccchhh-hcchhhhh-hhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc-ccChHHhhhhhhcceeccCCCch
Confidence            8888776 55666544 666888888888775 45665556666777777778877 66666577789999999999999


Q ss_pred             ccccchhhhccCCccEEEccCccccccccccc
Q 043452          336 VGQIPSWIGNFSSLALLTVSKNLLEGNIPVQL  367 (384)
Q Consensus       336 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  367 (384)
                      . .+|..+++|.+|+.|+++||++. ..+..+
T Consensus       518 q-~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~i  547 (565)
T KOG0472|consen  518 Q-QIPPILGNMTNLRHLELDGNPFR-QPRHQI  547 (565)
T ss_pred             h-hCChhhccccceeEEEecCCccC-CCHHHH
Confidence            8 88999999999999999999998 444444

>PLN03210 Resistant to P

Probab=99.89  E-value=1.1e-21  Score=197.52  Aligned_cols=319  Identities=20%  Similarity=0.208  Sum_probs=238.4

Q ss_pred             CCchhhhcCCCCCEEEeecCcc------cCccCccccCCC-CccEEECCCCccccccccccCCCCCchhhhhhhcccCce
Q 043452           45 PLPQCLKNLTRLKVFGISSNQL------SGSLPSVIASLT-SLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL  117 (384)
Q Consensus        45 ~~~~~l~~~~~L~~L~l~~~~~------~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  117 (384)
                      ....+|.++++|+.|.+..+..      ....|..+..+| +|+.|++.++.+.....   .....+|+.|.+..+..  
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~---~f~~~~L~~L~L~~s~l--  623 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPS---NFRPENLVKLQMQGSKL--  623 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCC---cCCccCCcEEECcCccc--
Confidence            4456789999999999976532      224566676664 69999999987765532   12467889888886543  


Q ss_pred             eeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCc
Q 043452          118 EVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNS  197 (384)
Q Consensus       118 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  197 (384)
                      ...+..+..+++|+.++++++......+.+..+++|+.|++++|.....+|..+ ..+++|+.|++++|......+..+ 
T Consensus       624 ~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp~~i-  701 (1153)
T PLN03210        624 EKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSI-QYLNKLEDLDMSRCENLEILPTGI-  701 (1153)
T ss_pred             cccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhh-hccCCCCEEeCCCCCCcCccCCcC-
Confidence            234455678899999999987654433357889999999999997666777765 588999999999986554555443 


Q ss_pred             cccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeecccccc------ccccchhc
Q 043452          198 KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSG------ELSAPLLT  271 (384)
Q Consensus       198 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~  271 (384)
                      .+++|+.|++++|.....++.    ..++|++|+++++.+.. .+..+ .+++|+.|.+.++....      ......+.
T Consensus       702 ~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~  775 (1153)
T PLN03210        702 NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTM  775 (1153)
T ss_pred             CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhh
Confidence            688999999999875544442    25689999999998874 33333 57889999888754220      11112233


Q ss_pred             cCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccE
Q 043452          272 GCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLAL  351 (384)
Q Consensus       272 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  351 (384)
                      .+++|+.|++++|......|..+..+++|+.|++++|.....++...  .+++|+.|++++|......|..   ..+|+.
T Consensus       776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~  850 (1153)
T PLN03210        776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPDI---STNISD  850 (1153)
T ss_pred             ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCcccccccc---ccccCE
Confidence            46789999999998877888889999999999999986443555543  5689999999999655455543   468999


Q ss_pred             EEccCcccccccccccccCCCCceEeCcCCC
Q 043452          352 LTVSKNLLEGNIPVQLKNLEALEILDVSENN  382 (384)
Q Consensus       352 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  382 (384)
                      |++++|.++ ..|..+..+++|+.|++++|+
T Consensus       851 L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~  880 (1153)
T PLN03210        851 LNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN  880 (1153)
T ss_pred             eECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence            999999998 678889999999999999975

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.89  E-value=4.4e-25  Score=202.32  Aligned_cols=359  Identities=28%  Similarity=0.361  Sum_probs=244.2

Q ss_pred             ccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECC
Q 043452            7 LKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLS   86 (384)
Q Consensus         7 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~   86 (384)
                      +..|++..|.+. ..|.....+.-+|+.|+++++.+. .+|..+..+++|+.|+++.+.+. .+|....++.+|++++|.
T Consensus        23 ~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   23 LQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK   99 (1081)
T ss_pred             HHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence            456677777554 444455566667999999999988 78999999999999999999888 788889999999999999


Q ss_pred             CCccccccccccCCCCCchhhhhhhcccCceeec----------cCC--------CCCCCCccEEEccCCCCCC-ccccc
Q 043452           87 DNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE----------TEN--------WLPTSQLKVLHLRNCNLNG-TLGFL  147 (384)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~----------~~~--------~~~~~~L~~L~l~~~~~~~-~~~~~  147 (384)
                      .|......  ..+..+.+|++++++.+.......          ...        ++. ..++.+++..+.+.+ +...+
T Consensus       100 ~n~l~~lP--~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-~~ik~~~l~~n~l~~~~~~~i  176 (1081)
T KOG0618|consen  100 NNRLQSLP--ASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-TSIKKLDLRLNVLGGSFLIDI  176 (1081)
T ss_pred             cchhhcCc--hhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc-ccchhhhhhhhhcccchhcch
Confidence            98776542  467888899999988765432110          000        111 124444444444333 33333


Q ss_pred             cccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCc------------------ccccCccccCCceEeeec
Q 043452          148 QKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGS------------------LQLSNSKLDFLHHLDISS  209 (384)
Q Consensus       148 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------------~~~~~~~~~~L~~L~l~~  209 (384)
                      ..+.+  .+++.+|.+. ...   ...+++|+.+....+++...                  ....-....+|+.++++.
T Consensus       177 ~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~  250 (1081)
T KOG0618|consen  177 YNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISH  250 (1081)
T ss_pred             hhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecch
Confidence            33333  4666655543 111   22334444444433332210                  000111235677888888


Q ss_pred             CccCCCcchhHHHhccCCcEEEccCCcCCC----------------------ccchhccCCCCCcEEEeecccccccccc
Q 043452          210 NSFTGRLPQNMSTILQKLVYLDMSKNKFEG----------------------SISSSISEMKDLRFLDLSRNQFSGELSA  267 (384)
Q Consensus       210 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~  267 (384)
                      +++. .++.++.. |++|+.++..+|.++.                      ..+...+....|++|++..|.+. ..+.
T Consensus       251 n~l~-~lp~wi~~-~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~  327 (1081)
T KOG0618|consen  251 NNLS-NLPEWIGA-CANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPD  327 (1081)
T ss_pred             hhhh-cchHHHHh-cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccch
Confidence            8777 66755554 7788888887776642                      23333444577888888888775 2222


Q ss_pred             chhc-------------------------cCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhcc
Q 043452          268 PLLT-------------------------GCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSA  322 (384)
Q Consensus       268 ~~~~-------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~  322 (384)
                      .++.                         ..+.|..|.+.+|.+++.....+..+++|+.|+++.|.+. .+++..+...
T Consensus       328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kl  406 (1081)
T KOG0618|consen  328 NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKL  406 (1081)
T ss_pred             HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhch
Confidence            2211                         1234566677778887777777788899999999999987 7888878888


Q ss_pred             ccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452          323 RSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       323 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      +.|+.|++++|.++ .+|..+..++.|+.|...+|++. ..| .+.+++.|+.+|+|-|+++
T Consensus       407 e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  407 EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence            99999999999998 78899999999999999999998 677 8889999999999999875

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.85  E-value=3.6e-23  Score=172.82  Aligned_cols=362  Identities=21%  Similarity=0.171  Sum_probs=207.7

Q ss_pred             cEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeec-CcccCccCccccCCCCccEEECC
Q 043452            8 KALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS-NQLSGSLPSVIASLTSLQYLDLS   86 (384)
Q Consensus         8 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~   86 (384)
                      ..++|..|.|+ .+|+.+|+.+++|+.|++++|.++.+.|++|..+++|..|-+.+ +.+++.-...|.++..|+.|.+.
T Consensus        70 veirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   70 VEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             eEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            34566666665 66666666666666666666666666666666666665555544 56664444556666666666665


Q ss_pred             CCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC-------------cccccccc---
Q 043452           87 DNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-------------TLGFLQKQ---  150 (384)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------------~~~~~~~~---  150 (384)
                      -+.+.-. ....+..++++..|.+.++.... .....+..+..++.+.+-.+.+..             .+..+++.   
T Consensus       149 an~i~Ci-r~~al~dL~~l~lLslyDn~~q~-i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  149 ANHINCI-RQDALRDLPSLSLLSLYDNKIQS-ICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             hhhhcch-hHHHHHHhhhcchhcccchhhhh-hccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            5554332 22345555555555554332211 112233333344433332222000             00000000   


Q ss_pred             -------------------CCCCeE---eccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeee
Q 043452          151 -------------------HDLKSL---DLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDIS  208 (384)
Q Consensus       151 -------------------~~L~~L---~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  208 (384)
                                         ..++.+   ..+.+...+..|...|+.+++|++|++++|.++.....+|.....+++|.+.
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~  306 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT  306 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence                               011111   1122333345677777888888888888888888778888888888888888


Q ss_pred             cCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchh---------------ccC
Q 043452          209 SNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLL---------------TGC  273 (384)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---------------~~~  273 (384)
                      +|++. .+...++.+++.|+.|++.+|+|+...+..+.....|.++++-.|++.-+-...++               .+.
T Consensus       307 ~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p  385 (498)
T KOG4237|consen  307 RNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSP  385 (498)
T ss_pred             cchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCC
Confidence            88886 67777778888888888888888877777777778888888888776522111111               112


Q ss_pred             CcceEEEccCCcccc---cccc---------cccccCCcCeE-eCCCCcCCcccchhhhhccccceEEEcCCCccccccc
Q 043452          274 FSLWLLDLSHNSFCG---QVSP---------KFMNLTQLGWL-SLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIP  340 (384)
Q Consensus       274 ~~L~~L~l~~~~~~~---~~~~---------~~~~~~~L~~l-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  340 (384)
                      ..++.+.+++..+.+   ..++         .-..|+.+.++ ..++..+. .++..+.   ....++.+.+|.++ .+|
T Consensus       386 ~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP---~d~telyl~gn~~~-~vp  460 (498)
T KOG4237|consen  386 GFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP---VDVTELYLDGNAIT-SVP  460 (498)
T ss_pred             chhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC---chhHHHhcccchhc-ccC
Confidence            235555554443321   1111         11122333322 12221221 2222211   24567888899888 556


Q ss_pred             hhhhccCCccEEEccCcccccccccccccCCCCceEeCcCC
Q 043452          341 SWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSEN  381 (384)
Q Consensus       341 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  381 (384)
                      ..  .+++| .+++++|++.......|.++.+|..|-|++|
T Consensus       461 ~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  461 DE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             HH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            55  56777 8999999998666666889999999988875

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.82  E-value=1.1e-20  Score=166.27  Aligned_cols=260  Identities=24%  Similarity=0.255  Sum_probs=184.2

Q ss_pred             CCCCCCccEEEccCCCCCC-----ccccccccCCCCeEeccCCccCC--Cc---HHHHhhhCCCccEEEcCCCCCcCccc
Q 043452          124 WLPTSQLKVLHLRNCNLNG-----TLGFLQKQHDLKSLDLSHNKLVG--SF---PAWLLQHNTKLEVLRLTNNSFTGSLQ  193 (384)
Q Consensus       124 ~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~--~~---~~~~~~~~~~L~~L~l~~~~~~~~~~  193 (384)
                      +..+++|++++++++.+..     ++..+...+.++.+++.++.+..  ..   ....+..+++|++|+++++.+.....
T Consensus        19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   98 (319)
T cd00116          19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC   98 (319)
T ss_pred             HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence            3445568888888887744     45566777889999998876641  11   12234457899999999988865444


Q ss_pred             ccCccc---cCCceEeeecCccCCCcchhHH---Hhc-cCCcEEEccCCcCCCc----cchhccCCCCCcEEEeeccccc
Q 043452          194 LSNSKL---DFLHHLDISSNSFTGRLPQNMS---TIL-QKLVYLDMSKNKFEGS----ISSSISEMKDLRFLDLSRNQFS  262 (384)
Q Consensus       194 ~~~~~~---~~L~~L~l~~~~~~~~~~~~~~---~~~-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~  262 (384)
                      ..+..+   ++|++|++++|.+.+.....+.   ..+ ++|+.|++++|.+++.    ....+..+++|++|++++|.+.
T Consensus        99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116          99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            444434   4499999999988743333322   224 7899999999998742    2344566789999999999987


Q ss_pred             cccccch---hccCCcceEEEccCCcccccc----cccccccCCcCeEeCCCCcCCcccchhhhhc----cccceEEEcC
Q 043452          263 GELSAPL---LTGCFSLWLLDLSHNSFCGQV----SPKFMNLTQLGWLSLDNNNFSGRISNGFLSS----ARSLQVLDIS  331 (384)
Q Consensus       263 ~~~~~~~---~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~----~~~L~~L~l~  331 (384)
                      +.....+   +...++|++|++++|.+.+..    ...+..+++|++|++++|.+++.....+...    .+.|++|+++
T Consensus       179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~  258 (319)
T cd00116         179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS  258 (319)
T ss_pred             hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence            5332222   334569999999999887543    3345678899999999999885444443333    3699999999


Q ss_pred             CCcccc----ccchhhhccCCccEEEccCcccccc----cccccccC-CCCceEeCcCCCC
Q 043452          332 NNKLVG----QIPSWIGNFSSLALLTVSKNLLEGN----IPVQLKNL-EALEILDVSENNL  383 (384)
Q Consensus       332 ~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~l~l~~~~~  383 (384)
                      +|.+++    .+...+..+++|+.+++++|.+.+.    ..+.+... +.|+.+++.+++|
T Consensus       259 ~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            998863    2345566778999999999999965    44444455 6899999999986

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=6.8e-19  Score=165.91  Aligned_cols=264  Identities=23%  Similarity=0.239  Sum_probs=165.2

Q ss_pred             cccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhh
Q 043452           31 NLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFML  110 (384)
Q Consensus        31 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l  110 (384)
                      +-..|+++++.++ .+|..+.  ++|+.|++++|.++ .+|.   ..++|++|++++|.+++...               
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP~---------------  259 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV---------------  259 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcccC---------------
Confidence            4566777777776 5566554  36777777777766 3443   24677777777776654310               


Q ss_pred             hcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcC
Q 043452          111 SLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTG  190 (384)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  190 (384)
                                     ..++|+.|++++|.+..++..   ..+|+.|++++|.++ .+|.    ..++|+.|++++|.+..
T Consensus       260 ---------------lp~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~  316 (788)
T PRK15387        260 ---------------LPPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS  316 (788)
T ss_pred             ---------------cccccceeeccCCchhhhhhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCcccc
Confidence                           123566666666665554432   245667777777665 4443    23667777777776664


Q ss_pred             cccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchh
Q 043452          191 SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLL  270 (384)
Q Consensus       191 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  270 (384)
                      ...    ....|+.|.+++|.+. .++.    ..++|+.|++++|+++.. +..   .++|+.|++++|.+. ..+.   
T Consensus       317 Lp~----lp~~L~~L~Ls~N~L~-~LP~----lp~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~-~LP~---  379 (788)
T PRK15387        317 LPA----LPSELCKLWAYNNQLT-SLPT----LPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLT-SLPA---  379 (788)
T ss_pred             CCC----CcccccccccccCccc-cccc----cccccceEecCCCccCCC-CCC---Ccccceehhhccccc-cCcc---
Confidence            321    1235667777777776 4442    134677888888777743 221   256777777777775 2221   


Q ss_pred             ccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCcc
Q 043452          271 TGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLA  350 (384)
Q Consensus       271 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  350 (384)
                       ..++|+.|++++|.+.. .|..   ..+|+.|++++|.++ .++..    ..+|+.|++++|+++ .+|..+.++++|+
T Consensus       380 -l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~  448 (788)
T PRK15387        380 -LPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSET  448 (788)
T ss_pred             -cccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCC
Confidence             23567888888887764 2322   256778888888876 34321    246777888888877 6777788888888


Q ss_pred             EEEccCccccccccccc
Q 043452          351 LLTVSKNLLEGNIPVQL  367 (384)
Q Consensus       351 ~L~l~~~~~~~~~~~~~  367 (384)
                      .|++++|++++..+..+
T Consensus       449 ~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        449 TVNLEGNPLSERTLQAL  465 (788)
T ss_pred             eEECCCCCCCchHHHHH
Confidence            88888888877655554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=8e-19  Score=165.44  Aligned_cols=258  Identities=23%  Similarity=0.277  Sum_probs=199.4

Q ss_pred             CCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEE
Q 043452           54 TRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVL  133 (384)
Q Consensus        54 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L  133 (384)
                      ..-..|+++.+.++ .+|..+.  ++|+.|.+.+|.++....                              .+++|++|
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~------------------------------lp~~Lk~L  247 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA------------------------------LPPELRTL  247 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCC------------------------------CCCCCcEE
Confidence            45678999999888 6777664  479999999987775310                              13689999


Q ss_pred             EccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccC
Q 043452          134 HLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFT  213 (384)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  213 (384)
                      ++++|.+..++..   .++|+.|++.+|.+. .++.    ..++|+.|++++|.++....    ..++|+.|++++|.+.
T Consensus       248 dLs~N~LtsLP~l---p~sL~~L~Ls~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~  315 (788)
T PRK15387        248 EVSGNQLTSLPVL---PPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLA  315 (788)
T ss_pred             EecCCccCcccCc---ccccceeeccCCchh-hhhh----chhhcCEEECcCCccccccc----cccccceeECCCCccc
Confidence            9999998887643   468999999999886 5554    23679999999998885432    3478999999999987


Q ss_pred             CCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccccc
Q 043452          214 GRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK  293 (384)
Q Consensus       214 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  293 (384)
                       .++.    ..++|+.|++++|.++.. +. +  .++|+.|++++|++. ..+.    ..++|+.|++++|.+.. .|..
T Consensus       316 -~Lp~----lp~~L~~L~Ls~N~L~~L-P~-l--p~~Lq~LdLS~N~Ls-~LP~----lp~~L~~L~Ls~N~L~~-LP~l  380 (788)
T PRK15387        316 -SLPA----LPSELCKLWAYNNQLTSL-PT-L--PSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTS-LPAL  380 (788)
T ss_pred             -cCCC----CcccccccccccCccccc-cc-c--ccccceEecCCCccC-CCCC----CCcccceehhhcccccc-Cccc
Confidence             4543    245789999999998743 32 1  258999999999987 3332    24678999999998875 3432


Q ss_pred             ccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCC
Q 043452          294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEAL  373 (384)
Q Consensus       294 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  373 (384)
                         ..+|+.|++++|.++ .++..    .++|+.|++++|.+. .+|..   ..+|+.|++++|+++ .+|..+..+++|
T Consensus       381 ---~~~L~~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L  447 (788)
T PRK15387        381 ---PSGLKELIVSGNRLT-SLPVL----PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSE  447 (788)
T ss_pred             ---ccccceEEecCCccc-CCCCc----ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCC
Confidence               257999999999988 44432    368999999999998 46653   356889999999998 678899999999


Q ss_pred             ceEeCcCCCCC
Q 043452          374 EILDVSENNLS  384 (384)
Q Consensus       374 ~~l~l~~~~~s  384 (384)
                      +.+++++|+|+
T Consensus       448 ~~LdLs~N~Ls  458 (788)
T PRK15387        448 TTVNLEGNPLS  458 (788)
T ss_pred             CeEECCCCCCC
Confidence            99999999986

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.80  E-value=2.2e-21  Score=162.27  Aligned_cols=294  Identities=19%  Similarity=0.187  Sum_probs=156.8

Q ss_pred             ecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccC
Q 043452           36 NLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNN  115 (384)
Q Consensus        36 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  115 (384)
                      +.++..++ ++|..+.  +.-.++.+..|.++..-+.+|+.+++||+|+|++|.|+..                      
T Consensus        52 dCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I----------------------  106 (498)
T KOG4237|consen   52 DCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI----------------------  106 (498)
T ss_pred             EccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhc----------------------
Confidence            33333444 4455443  3556677777777766666777777777777777766533                      


Q ss_pred             ceeeccCCCCCCCCccEEEccC-CCCCCcc-ccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCccc
Q 043452          116 TLEVETENWLPTSQLKVLHLRN-CNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQ  193 (384)
Q Consensus       116 ~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  193 (384)
                          .+++|..++++..|-+.+ +++.+++ ..|..+..++.|.+.-+.+. -++...+..++++..|.+..+.+.....
T Consensus       107 ----~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~  181 (498)
T KOG4237|consen  107 ----APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICK  181 (498)
T ss_pred             ----ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhcc
Confidence                234455555555554444 5555544 45677778888888888776 6777777888888888888887776666


Q ss_pred             ccCccccCCceEeeecCccCCC-cchhHHH----------hccCCcEEEccCCcCCCccchhccCC-CCCcEEEeecccc
Q 043452          194 LSNSKLDFLHHLDISSNSFTGR-LPQNMST----------ILQKLVYLDMSKNKFEGSISSSISEM-KDLRFLDLSRNQF  261 (384)
Q Consensus       194 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~----------~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~  261 (384)
                      ..+..+..++.+.+..+.+... -..+...          +.....-..+.+.++....+..+... ..+..=-.+.+..
T Consensus       182 ~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~  261 (498)
T KOG4237|consen  182 GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP  261 (498)
T ss_pred             ccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc
Confidence            6777778888888777763311 1111111          00111111111111111111111100 0111001111222


Q ss_pred             ccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccch
Q 043452          262 SGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPS  341 (384)
Q Consensus       262 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  341 (384)
                      .+..+..-|.++++|+.|++++|.++...+.+|.+..+++.|++..|++. .+..++|.+...|+.|++.+|+|+-..|.
T Consensus       262 d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~  340 (498)
T KOG4237|consen  262 DSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPG  340 (498)
T ss_pred             CCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecc
Confidence            22333344555555555555555555555555555555555555555554 44445555555555555555555555555


Q ss_pred             hhhccCCccEEEccCcccc
Q 043452          342 WIGNFSSLALLTVSKNLLE  360 (384)
Q Consensus       342 ~~~~~~~L~~L~l~~~~~~  360 (384)
                      +|..+.+|.+|++-.|++.
T Consensus       341 aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  341 AFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             cccccceeeeeehccCccc
Confidence            5555555555555555543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.79  E-value=1.8e-19  Score=158.66  Aligned_cols=86  Identities=23%  Similarity=0.196  Sum_probs=44.2

Q ss_pred             CCcceEEEccCCccccccccccc-----ccCCcCeEeCCCCcCCcccch---hhhhccccceEEEcCCCccccc----cc
Q 043452          273 CFSLWLLDLSHNSFCGQVSPKFM-----NLTQLGWLSLDNNNFSGRISN---GFLSSARSLQVLDISNNKLVGQ----IP  340 (384)
Q Consensus       273 ~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~l~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~----~~  340 (384)
                      +++|++|++++|.+.+.....+.     ..+.|+.|++++|.+++....   .....+++|+.+++++|.+.+.    ..
T Consensus       220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~  299 (319)
T cd00116         220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA  299 (319)
T ss_pred             cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence            44455555555544432222211     125666677766666532222   1223335677777777766643    33


Q ss_pred             hhhhcc-CCccEEEccCcc
Q 043452          341 SWIGNF-SSLALLTVSKNL  358 (384)
Q Consensus       341 ~~~~~~-~~L~~L~l~~~~  358 (384)
                      .++... +.|++|++.+++
T Consensus       300 ~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         300 ESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHhhcCCchhhcccCCCC
Confidence            344444 567777777665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.71  E-value=8.7e-17  Score=152.60  Aligned_cols=226  Identities=23%  Similarity=0.329  Sum_probs=135.9

Q ss_pred             CCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEee
Q 043452          128 SQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDI  207 (384)
Q Consensus       128 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  207 (384)
                      +.++.|++++|.+..++..+.  ++|+.|++++|.++ .+|..+.   ++|+.|++++|.+... +..+  ..+|+.|++
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~~L-P~~l--~s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRITEL-PERL--PSALQSLDL  269 (754)
T ss_pred             cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccCcC-ChhH--hCCCCEEEC
Confidence            356677777776666555433  46777777777665 5555432   4577777777766633 2222  246777777


Q ss_pred             ecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccc
Q 043452          208 SSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFC  287 (384)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  287 (384)
                      ++|.+. .++..+   +++|+.|++++|.++.. +..+.  ++|+.|++++|.+. ..+...   .++|+.|++++|.++
T Consensus       270 s~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt  338 (754)
T PRK15370        270 FHNKIS-CLPENL---PEELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALT  338 (754)
T ss_pred             cCCccC-cccccc---CCCCcEEECCCCccccC-cccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCccc
Confidence            777766 455433   24677777777776632 22221  35677777777765 222222   356777777777766


Q ss_pred             ccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccc-
Q 043452          288 GQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQ-  366 (384)
Q Consensus       288 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-  366 (384)
                      . .|..+.  ++|+.|++++|.++ .++..+   .+.|+.|++++|.++ .+|..+.  .+|+.|++++|++. ..|.. 
T Consensus       339 ~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl  407 (754)
T PRK15370        339 S-LPASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESL  407 (754)
T ss_pred             c-CChhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhH
Confidence            4 333332  56777777777776 444332   256777777777776 4455443  25777777777776 33333 


Q ss_pred             ---cccCCCCceEeCcCCCCC
Q 043452          367 ---LKNLEALEILDVSENNLS  384 (384)
Q Consensus       367 ---~~~~~~L~~l~l~~~~~s  384 (384)
                         ...++.+..+++.+|+|+
T Consensus       408 ~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        408 PHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHhhcCCCccEEEeeCCCcc
Confidence               334577777777777764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.67  E-value=1.1e-15  Score=145.30  Aligned_cols=204  Identities=22%  Similarity=0.329  Sum_probs=100.2

Q ss_pred             CccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeee
Q 043452          129 QLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDIS  208 (384)
Q Consensus       129 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  208 (384)
                      +|+.|++++|.+..++..+.  ++|+.|++++|.+. .+|..+.   ++|+.|++++|.+... +..+  .++|+.|+++
T Consensus       221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls  291 (754)
T PRK15370        221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT-ELPERLP---SALQSLDLFHNKISCL-PENL--PEELRYLSVY  291 (754)
T ss_pred             CCCEEECCCCccccCChhhh--ccccEEECcCCccC-cCChhHh---CCCCEEECcCCccCcc-cccc--CCCCcEEECC
Confidence            45555555555444433221  24555555555554 4444332   3455666655555422 2222  1356666666


Q ss_pred             cCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccc
Q 043452          209 SNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCG  288 (384)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  288 (384)
                      +|.+. .++..+.   ++|+.|++++|.++.. +..+  .++|+.|++++|.++ ..+..+   +++|+.|++++|.+..
T Consensus       292 ~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~~  360 (754)
T PRK15370        292 DNSIR-TLPAHLP---SGITHLNVQSNSLTAL-PETL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQITV  360 (754)
T ss_pred             CCccc-cCcccch---hhHHHHHhcCCccccC-Cccc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCCc
Confidence            66555 3333221   2455666666655532 2211  245666666666554 222222   2456666666665553


Q ss_pred             cccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhh----hccCCccEEEccCcccc
Q 043452          289 QVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWI----GNFSSLALLTVSKNLLE  360 (384)
Q Consensus       289 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~  360 (384)
                       .|..+  .+.|+.|++++|.++ .++..+.   ..|+.|++++|++. .+|..+    ..++++..|++.+|++.
T Consensus       361 -LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        361 -LPETL--PPTITTLDVSRNALT-NLPENLP---AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             -CChhh--cCCcCEEECCCCcCC-CCCHhHH---HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence             23222  145666666666665 3443322   24666666666655 333322    23355666666666654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.53  E-value=6.9e-15  Score=121.91  Aligned_cols=237  Identities=22%  Similarity=0.251  Sum_probs=169.2

Q ss_pred             CCCCCCccEEEccCCCCCC-----ccccccccCCCCeEeccCCc---cCCCcHHH------HhhhCCCccEEEcCCCCCc
Q 043452          124 WLPTSQLKVLHLRNCNLNG-----TLGFLQKQHDLKSLDLSHNK---LVGSFPAW------LLQHNTKLEVLRLTNNSFT  189 (384)
Q Consensus       124 ~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~---~~~~~~~~------~~~~~~~L~~L~l~~~~~~  189 (384)
                      ..++.++++++++++.+..     +...+...+.|+..++++..   ..+++|..      .+..+|+|++++++.|.+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            3456788999999988765     55677777889999888742   22234432      2335679999999998776


Q ss_pred             Cccc----ccCccccCCceEeeecCccCCCcchhHHH------------hccCCcEEEccCCcCCCc----cchhccCCC
Q 043452          190 GSLQ----LSNSKLDFLHHLDISSNSFTGRLPQNMST------------ILQKLVYLDMSKNKFEGS----ISSSISEMK  249 (384)
Q Consensus       190 ~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------------~~~~L~~L~l~~~~~~~~----~~~~~~~~~  249 (384)
                      ....    .-++++..|++|.|.+|.+.......+.+            ..+.|+.+....|++.+.    ....+...+
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence            4333    23456788999999999877433333222            246799999999988653    335566778


Q ss_pred             CCcEEEeeccccccccc---cchhccCCcceEEEccCCccccc----ccccccccCCcCeEeCCCCcCCcccchh----h
Q 043452          250 DLRFLDLSRNQFSGELS---APLLTGCFSLWLLDLSHNSFCGQ----VSPKFMNLTQLGWLSLDNNNFSGRISNG----F  318 (384)
Q Consensus       250 ~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~----~  318 (384)
                      .|+.+++..|.+.....   ...+..|++|++|++++|.++..    +...++.+++|+.++++.|.+.......    +
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            99999999998863333   34567799999999999988754    3445677889999999999887554433    2


Q ss_pred             hhccccceEEEcCCCccccc----cchhhhccCCccEEEccCcccc
Q 043452          319 LSSARSLQVLDISNNKLVGQ----IPSWIGNFSSLALLTVSKNLLE  360 (384)
Q Consensus       319 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~  360 (384)
                      -...|.|+.+.+.+|.++..    +..++...+.|+.|+|++|++.
T Consensus       266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            33367899999999988643    2334456788999999999993

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.47  E-value=3.3e-15  Score=111.47  Aligned_cols=158  Identities=26%  Similarity=0.384  Sum_probs=113.9

Q ss_pred             hhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCch
Q 043452           26 ICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNL  105 (384)
Q Consensus        26 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  105 (384)
                      +-++.+.+.|.+++++++ .+|..++.+.+|+.|++.+++++ ..|..+++++.|+.|+++-|++...  ...+..++.|
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~l--prgfgs~p~l  104 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNIL--PRGFGSFPAL  104 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcC--ccccCCCchh
Confidence            334556666677777776 56666677777777777777666 6666677777777777766554322  2466667777


Q ss_pred             hhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCC
Q 043452          106 EFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTN  185 (384)
Q Consensus       106 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  185 (384)
                      +++++..+.......+..|+.+..|+.|+++.+.+..++..+.++.+|+.|.+.++.+. .+|.++ +.+..|++|++-+
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkei-g~lt~lrelhiqg  182 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEI-GDLTRLRELHIQG  182 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHH-HHHHHHHHHhccc
Confidence            77777766666666777788888888888888888878888888888888888888776 777777 3778888888888


Q ss_pred             CCCc
Q 043452          186 NSFT  189 (384)
Q Consensus       186 ~~~~  189 (384)
                      |.++
T Consensus       183 nrl~  186 (264)
T KOG0617|consen  183 NRLT  186 (264)
T ss_pred             ceee
Confidence            8776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.44  E-value=4.3e-15  Score=110.88  Aligned_cols=161  Identities=27%  Similarity=0.371  Sum_probs=139.5

Q ss_pred             CccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEE
Q 043452            4 FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYL   83 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L   83 (384)
                      +...+.|.++++.++ .+ +..++++.+|+.|++++++++ .+|..++.+++|+.|+++-+.+. ..|..|+.+|.|..|
T Consensus        32 ~s~ITrLtLSHNKl~-~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            456678999999997 55 466899999999999999999 79999999999999999988877 899999999999999


Q ss_pred             ECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCcc
Q 043452           84 DLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKL  163 (384)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  163 (384)
                      ++.+|.+.......-+..++.|+-+.+++++.  +..+....++++|+.|.+..+.+..++..+..+..|++|++.++.+
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCc--ccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence            99999887665556677788999998886654  4566677889999999999999999999999999999999999998


Q ss_pred             CCCcHHHH
Q 043452          164 VGSFPAWL  171 (384)
Q Consensus       164 ~~~~~~~~  171 (384)
                      + .+|.++
T Consensus       186 ~-vlppel  192 (264)
T KOG0617|consen  186 T-VLPPEL  192 (264)
T ss_pred             e-ecChhh
Confidence            7 666554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.40  E-value=1.3e-13  Score=114.51  Aligned_cols=241  Identities=20%  Similarity=0.175  Sum_probs=175.5

Q ss_pred             ccccccccCCCCeEeccCCccCCCcHHHHh---hhCCCccEEEcCCCC---Cc-------CcccccCccccCCceEeeec
Q 043452          143 TLGFLQKQHDLKSLDLSHNKLVGSFPAWLL---QHNTKLEVLRLTNNS---FT-------GSLQLSNSKLDFLHHLDISS  209 (384)
Q Consensus       143 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~---~~-------~~~~~~~~~~~~L~~L~l~~  209 (384)
                      +...+.....++.+++++|.+..+...++.   +..++|+..+++.--   ..       .+...++..+|+|++++||+
T Consensus        22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD  101 (382)
T KOG1909|consen   22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD  101 (382)
T ss_pred             HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence            445566778899999999988655555543   445677777776431   11       12233455778999999999


Q ss_pred             CccCCCcchh---HHHhccCCcEEEccCCcCCCccc-------------hhccCCCCCcEEEeecccccccc---ccchh
Q 043452          210 NSFTGRLPQN---MSTILQKLVYLDMSKNKFEGSIS-------------SSISEMKDLRFLDLSRNQFSGEL---SAPLL  270 (384)
Q Consensus       210 ~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~~~~~~---~~~~~  270 (384)
                      |.+....+..   +.+.+..|++|++.+|.+.....             .....-+.|+++...+|.+.+..   ....|
T Consensus       102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~  181 (382)
T KOG1909|consen  102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF  181 (382)
T ss_pred             cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence            9988666654   44557899999999998864322             22334589999999999876322   23456


Q ss_pred             ccCCcceEEEccCCcccccc----cccccccCCcCeEeCCCCcCCcccchhh---hhccccceEEEcCCCccccccchhh
Q 043452          271 TGCFSLWLLDLSHNSFCGQV----SPKFMNLTQLGWLSLDNNNFSGRISNGF---LSSARSLQVLDISNNKLVGQIPSWI  343 (384)
Q Consensus       271 ~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~  343 (384)
                      ...+.|+.+.+..|.+....    ...+..|++|++|++..|.++......+   ++..+.|++|+++.|.+......++
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~  261 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF  261 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence            66789999999999886543    3567789999999999999885544443   3445679999999999876655444


Q ss_pred             -----hccCCccEEEccCcccccc----cccccccCCCCceEeCcCCCC
Q 043452          344 -----GNFSSLALLTVSKNLLEGN----IPVQLKNLEALEILDVSENNL  383 (384)
Q Consensus       344 -----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~  383 (384)
                           .+.++|+.+.+.+|.++..    ...++...|.|.+|++++|.+
T Consensus       262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence                 3578999999999999864    334456689999999999976

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=5.9e-14  Score=119.72  Aligned_cols=216  Identities=19%  Similarity=0.188  Sum_probs=127.6

Q ss_pred             ccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcC--cccccCccccCCceEeeecCccCCCcchhHHH
Q 043452          145 GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTG--SLQLSNSKLDFLHHLDISSNSFTGRLPQNMST  222 (384)
Q Consensus       145 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  222 (384)
                      ..=.++++|+++.+.++.............|++++.|+++.|-+..  ........+|+|+.|+++.|.+.-........
T Consensus       115 akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~  194 (505)
T KOG3207|consen  115 AKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL  194 (505)
T ss_pred             HHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence            3345567788888877766433322455677888888888775542  22333456777888888777765333333334


Q ss_pred             hccCCcEEEccCCcCCC-ccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccc-cccccccCCc
Q 043452          223 ILQKLVYLDMSKNKFEG-SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQV-SPKFMNLTQL  300 (384)
Q Consensus       223 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L  300 (384)
                      .++.|+.|.++.|.++- .....+..+|+|+.|.+.+|... .....-...+..|++|++++|.+.+.. -.....++.|
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L  273 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL  273 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence            46677777777777752 12334456777777777777421 111122233556777777777665422 1234456777


Q ss_pred             CeEeCCCCcCCcccchhh-----hhccccceEEEcCCCccccc-cchhhhccCCccEEEccCccccc
Q 043452          301 GWLSLDNNNFSGRISNGF-----LSSARSLQVLDISNNKLVGQ-IPSWIGNFSSLALLTVSKNLLEG  361 (384)
Q Consensus       301 ~~l~l~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~  361 (384)
                      +.++++.+.+...-.+..     ....++|+.|++..|++.+. -...+..+++|+.|.+-.+++..
T Consensus       274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            777777776653222221     33456777777777777421 22344556677777777776664

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=8.4e-13  Score=112.80  Aligned_cols=212  Identities=21%  Similarity=0.189  Sum_probs=145.2

Q ss_pred             CCCCCccEEEccCCCCCCcc--ccccccCCCCeEeccCCccC-CCcHHHHhhhCCCccEEEcCCCCCcCccccc-Ccccc
Q 043452          125 LPTSQLKVLHLRNCNLNGTL--GFLQKQHDLKSLDLSHNKLV-GSFPAWLLQHNTKLEVLRLTNNSFTGSLQLS-NSKLD  200 (384)
Q Consensus       125 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~  200 (384)
                      .++.+|+.+.+.++.+....  .....|++++.|+++.|-+. -.....++..+|+|+.|.++.|.+....... -..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            34557778888877776644  47788888999999888553 2445567778899999999888765332211 12567


Q ss_pred             CCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEE
Q 043452          201 FLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLD  280 (384)
Q Consensus       201 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  280 (384)
                      +|+.|.++.|+++.....++...+|+|+.|++.+|..-..-.....-+..|+.|++++|.+.+.......+.++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            88899999999887777788888899999999888422122233334567888999998876444445556688888888


Q ss_pred             ccCCccccccccc------ccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccc
Q 043452          281 LSHNSFCGQVSPK------FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV  336 (384)
Q Consensus       281 l~~~~~~~~~~~~------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  336 (384)
                      ++.+.+.+..-..      ...+++|+.|++..|++.+.-...-....++|..|.+..|.+.
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            8888776532211      2356788899998888853333332334467777777766553

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.26  E-value=2.6e-13  Score=115.20  Aligned_cols=254  Identities=20%  Similarity=0.155  Sum_probs=137.9

Q ss_pred             CccEEEccCCCCCC---ccccccccCCCCeEeccCC-ccCCCcHHHHhhhCCCccEEEcCCCC-CcCcccc-cCccccCC
Q 043452          129 QLKVLHLRNCNLNG---TLGFLQKQHDLKSLDLSHN-KLVGSFPAWLLQHNTKLEVLRLTNNS-FTGSLQL-SNSKLDFL  202 (384)
Q Consensus       129 ~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~-~~~~~~~L  202 (384)
                      .|+.|+++++.-.+   +-.....+|+++.|.+.+| .+++.....+...|++++++.+..|. +++.... ....+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            34455554443332   2233444555555555554 23333444444455555555555432 2222111 11244555


Q ss_pred             ceEeeecCc-cCCCcchhHHHhccCCc--------------------------EEEccCCc-CCCccc-hhccCCCCCcE
Q 043452          203 HHLDISSNS-FTGRLPQNMSTILQKLV--------------------------YLDMSKNK-FEGSIS-SSISEMKDLRF  253 (384)
Q Consensus       203 ~~L~l~~~~-~~~~~~~~~~~~~~~L~--------------------------~L~l~~~~-~~~~~~-~~~~~~~~L~~  253 (384)
                      +++.+++|. +.+.....+.+++..++                          .+++..|. +++... ..-..+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            555555543 33333334444444444                          44443432 222111 11223456677


Q ss_pred             EEeeccccc-cccccchhccCCcceEEEccCCcc-cccccccc-cccCCcCeEeCCCCcCC-cccchhhhhccccceEEE
Q 043452          254 LDLSRNQFS-GELSAPLLTGCFSLWLLDLSHNSF-CGQVSPKF-MNLTQLGWLSLDNNNFS-GRISNGFLSSARSLQVLD  329 (384)
Q Consensus       254 L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~  329 (384)
                      +..+++... +.....+-.++++|+++.+..|+. ++.....+ .+++.|+.+++.++... +.....+..+|+.|+++.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            777766432 223334555678888888888753 32222222 25678888888887643 222445566788999999


Q ss_pred             cCCC-ccccccchhh----hccCCccEEEccCcccc-cccccccccCCCCceEeCcCCC
Q 043452          330 ISNN-KLVGQIPSWI----GNFSSLALLTVSKNLLE-GNIPVQLKNLEALEILDVSENN  382 (384)
Q Consensus       330 l~~~-~~~~~~~~~~----~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~  382 (384)
                      +++| .+++....++    .++..|+.+.+++|+.+ +...+.+..|++|+++++-+|+
T Consensus       379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            9998 4565533333    45678999999999754 4566667889999999888875

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=1.3e-12  Score=106.33  Aligned_cols=84  Identities=24%  Similarity=0.236  Sum_probs=37.8

Q ss_pred             ccEEEcCCCCCcCc-ccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCc-CCCc-cchhccCCCCCcEE
Q 043452          178 LEVLRLTNNSFTGS-LQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNK-FEGS-ISSSISEMKDLRFL  254 (384)
Q Consensus       178 L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L  254 (384)
                      |+++++++..++.. ....+++|.+|+.|.+.+..+++.+...+++ -++|+.++++.|. ++.. ....+.+|++|..|
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            55555555444321 2223344555555555555555444444444 3445555555442 2211 12233445555555


Q ss_pred             Eeeccccc
Q 043452          255 DLSRNQFS  262 (384)
Q Consensus       255 ~l~~~~~~  262 (384)
                      +++.|...
T Consensus       266 NlsWc~l~  273 (419)
T KOG2120|consen  266 NLSWCFLF  273 (419)
T ss_pred             CchHhhcc
Confidence            55555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.24  E-value=1.5e-11  Score=95.64  Aligned_cols=123  Identities=31%  Similarity=0.329  Sum_probs=35.0

Q ss_pred             CCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEE
Q 043452          250 DLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLD  329 (384)
Q Consensus       250 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~  329 (384)
                      ++++|++.+|.+. .+ ...-..+.+|+.|++++|.+...  ..+..++.|++|++++|.++ .+...+...+|+|++|.
T Consensus        20 ~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence            4455555555543 11 11111244555555555555432  12444556666666666665 33333333456666666


Q ss_pred             cCCCccccc-cchhhhccCCccEEEccCcccccc---cccccccCCCCceEe
Q 043452          330 ISNNKLVGQ-IPSWIGNFSSLALLTVSKNLLEGN---IPVQLKNLEALEILD  377 (384)
Q Consensus       330 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~l~  377 (384)
                      +++|.+.+. ....+..+++|+.|++.+|+++..   -...+..+|+|+.||
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            666655432 224455666666666666666532   111245566666664

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.22  E-value=4.1e-13  Score=114.06  Aligned_cols=160  Identities=18%  Similarity=0.133  Sum_probs=83.7

Q ss_pred             chhHHHhccCCcEEEccCCcC-CCccchhc-cCCCCCcEEEeeccc-cccccccchhccCCcceEEEccCCcccccc--c
Q 043452          217 PQNMSTILQKLVYLDMSKNKF-EGSISSSI-SEMKDLRFLDLSRNQ-FSGELSAPLLTGCFSLWLLDLSHNSFCGQV--S  291 (384)
Q Consensus       217 ~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~  291 (384)
                      ...+..++..|+.+..+++.- ++.....+ .++++|+.+.+.+|+ +++.....+-.+++.|+.+++.++....+.  .
T Consensus       286 ~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~  365 (483)
T KOG4341|consen  286 LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA  365 (483)
T ss_pred             HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh
Confidence            334444455566666655432 22222222 345666666666665 332222334445666666666665433221  1


Q ss_pred             ccccccCCcCeEeCCCCcC-Ccccch---hhhhccccceEEEcCCCc-cccccchhhhccCCccEEEccCcc-ccccccc
Q 043452          292 PKFMNLTQLGWLSLDNNNF-SGRISN---GFLSSARSLQVLDISNNK-LVGQIPSWIGNFSSLALLTVSKNL-LEGNIPV  365 (384)
Q Consensus       292 ~~~~~~~~L~~l~l~~~~~-~~~~~~---~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~  365 (384)
                      ..-..|+.|+.+.+++|.. ++....   .-......++.+.+++|. +++...+.+..|++|+.+++.+|+ ++.+..+
T Consensus       366 sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~  445 (483)
T KOG4341|consen  366 SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAIS  445 (483)
T ss_pred             hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhH
Confidence            2223566777777776653 222111   111233567777777774 455666677778888888888875 3333333


Q ss_pred             cc-ccCCCCceE
Q 043452          366 QL-KNLEALEIL  376 (384)
Q Consensus       366 ~~-~~~~~L~~l  376 (384)
                      .| .++|+++..
T Consensus       446 ~~~~~lp~i~v~  457 (483)
T KOG4341|consen  446 RFATHLPNIKVH  457 (483)
T ss_pred             HHHhhCccceeh
Confidence            33 456666543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1.5e-12  Score=105.97  Aligned_cols=199  Identities=24%  Similarity=0.182  Sum_probs=143.7

Q ss_pred             CCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCc-cCCCcchhHHHhccCCcE
Q 043452          151 HDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS-FTGRLPQNMSTILQKLVY  229 (384)
Q Consensus       151 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~  229 (384)
                      ..|+.++++...++..-...+.+.|.+|+.|.+.+.++.+.+...+++-.+|+.++++.+. +++.....+...|+.|.+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            3589999999888767777888999999999999999999988899999999999999865 665566778888999999


Q ss_pred             EEccCCcCCCccchhcc--CCCCCcEEEeeccccc--cccccchhccCCcceEEEccCCc-ccccccccccccCCcCeEe
Q 043452          230 LDMSKNKFEGSISSSIS--EMKDLRFLDLSRNQFS--GELSAPLLTGCFSLWLLDLSHNS-FCGQVSPKFMNLTQLGWLS  304 (384)
Q Consensus       230 L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~  304 (384)
                      |+++.|.........+.  --++|+.|+++|+...  ..-.....+.|++|..||+++|. +.......+.+++-|+++.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            99999987644322221  2378999999998543  22233455678999999998864 4444445566788899999


Q ss_pred             CCCCcCCcccchhh--hhccccceEEEcCCCccccccchhhhccCCccE
Q 043452          305 LDNNNFSGRISNGF--LSSARSLQVLDISNNKLVGQIPSWIGNFSSLAL  351 (384)
Q Consensus       305 l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  351 (384)
                      ++.|+..  ++..+  +...|+|.+|++.+|--....--...++++|+.
T Consensus       345 lsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki  391 (419)
T KOG2120|consen  345 LSRCYDI--IPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI  391 (419)
T ss_pred             hhhhcCC--ChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence            9988742  23222  344578888888887322122122245666543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.17  E-value=3.9e-11  Score=93.37  Aligned_cols=109  Identities=25%  Similarity=0.321  Sum_probs=42.8

Q ss_pred             hccCCcceEEEccCCccccccccccc-ccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhh-hccC
Q 043452          270 LTGCFSLWLLDLSHNSFCGQVSPKFM-NLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWI-GNFS  347 (384)
Q Consensus       270 ~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~  347 (384)
                      +.++.++++|++++|.++...  .+. .+.+|+.|++++|.++ .+..  +..++.|++|++++|.+++. .+.+ ..++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp   88 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISSI-SEGLDKNLP   88 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-T
T ss_pred             ccccccccccccccccccccc--chhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCcc-ccchHHhCC
Confidence            345668999999999997532  333 5688999999999998 4432  56679999999999999954 4444 5799


Q ss_pred             CccEEEccCcccccc-cccccccCCCCceEeCcCCCCC
Q 043452          348 SLALLTVSKNLLEGN-IPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       348 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      +|++|++++|++.+. ....+..+|+|+.|++.+||++
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            999999999999863 3356788999999999999985

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.12  E-value=2.8e-11  Score=98.93  Aligned_cols=131  Identities=27%  Similarity=0.297  Sum_probs=102.0

Q ss_pred             cCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccc
Q 043452          246 SEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSL  325 (384)
Q Consensus       246 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L  325 (384)
                      ..++-|+++++++|.++ .+ .+...-.|.++.|++++|.+.....  ++.+++|+.|++++|.++  ...++-..+.+.
T Consensus       281 dTWq~LtelDLS~N~I~-~i-DESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls--~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QI-DESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLA--ECVGWHLKLGNI  354 (490)
T ss_pred             chHhhhhhccccccchh-hh-hhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhH--hhhhhHhhhcCE
Confidence            34467899999999886 32 2333457899999999999875443  667889999999999886  334556667899


Q ss_pred             eEEEcCCCccccccchhhhccCCccEEEccCccccc-ccccccccCCCCceEeCcCCCCC
Q 043452          326 QVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG-NIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       326 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      ++|.+++|.+. . ...+..+-+|..||+++|++.. .....++++|-|+.+.+.+||++
T Consensus       355 KtL~La~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  355 KTLKLAQNKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             eeeehhhhhHh-h-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            99999999776 2 2345778889999999999875 34455899999999999999974

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.10  E-value=9.4e-11  Score=75.12  Aligned_cols=61  Identities=41%  Similarity=0.519  Sum_probs=51.5

Q ss_pred             ccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452          323 RSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL  383 (384)
Q Consensus       323 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  383 (384)
                      |+|++|++++|.+....+++|.++++|+.|++++|++..+.+..|..+++|+.|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5688888888888866667888888899999998888877778888889999999888875

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.09  E-value=5.9e-11  Score=115.14  Aligned_cols=83  Identities=28%  Similarity=0.392  Sum_probs=45.8

Q ss_pred             CccccEEeCcCcc--cccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCcc
Q 043452            4 FKNLKALDLSYTG--INGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQ   81 (384)
Q Consensus         4 ~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~   81 (384)
                      ++.|++|-+..+.  +. .++...|..+|.|+.|++++|.-...+|..++.+-+|++|+++++.+. .+|..+.++..|.
T Consensus       544 ~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI  621 (889)
T ss_pred             CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence            4455555555553  22 343344555666666666654433355666666666666666665555 5555566666666


Q ss_pred             EEECCCC
Q 043452           82 YLDLSDN   88 (384)
Q Consensus        82 ~L~l~~~   88 (384)
                      +|++..+
T Consensus       622 ~Lnl~~~  628 (889)
T KOG4658|consen  622 YLNLEVT  628 (889)
T ss_pred             eeccccc
Confidence            6666544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.96  E-value=4.3e-10  Score=92.10  Aligned_cols=126  Identities=26%  Similarity=0.252  Sum_probs=66.7

Q ss_pred             ccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEee
Q 043452          178 LEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLS  257 (384)
Q Consensus       178 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  257 (384)
                      |++++++.|.++ .+.+...-.|.++.|+++.|.+. .+..  ...+++|+.|++++|.++. ...+-..+.++++|.++
T Consensus       286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n--La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN--LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhccccccchh-hhhhhhhhccceeEEecccccee-eehh--hhhcccceEeecccchhHh-hhhhHhhhcCEeeeehh
Confidence            445555554444 22233334455555555555554 2222  2225566666666665542 22223345666777777


Q ss_pred             ccccccccccchhccCCcceEEEccCCcccc-cccccccccCCcCeEeCCCCcCC
Q 043452          258 RNQFSGELSAPLLTGCFSLWLLDLSHNSFCG-QVSPKFMNLTQLGWLSLDNNNFS  311 (384)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~  311 (384)
                      +|.+..   ..-+.++-+|..|++++|++.. +....+.++|.|+.+.+.+|++.
T Consensus       361 ~N~iE~---LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  361 QNKIET---LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhHhh---hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            766541   1123345566677777776653 12234567777888888888776

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=1.2e-09  Score=70.00  Aligned_cols=61  Identities=34%  Similarity=0.462  Sum_probs=48.5

Q ss_pred             CCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccc
Q 043452          298 TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLL  359 (384)
Q Consensus       298 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  359 (384)
                      ++|++|++++|.++ .++...+..+++|++|++++|.+....+++|.++++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46778888888777 66777777788888888888888777777888888888888888864

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.88  E-value=2.6e-09  Score=96.84  Aligned_cols=201  Identities=32%  Similarity=0.408  Sum_probs=127.6

Q ss_pred             CeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccc-cCCceEeeecCccCCCcchhHHHhccCCcEEEc
Q 043452          154 KSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKL-DFLHHLDISSNSFTGRLPQNMSTILQKLVYLDM  232 (384)
Q Consensus       154 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  232 (384)
                      ..+....+........  ....+.++.+++.++.++.... ..... ++|+.|+++++.+. ..+..+.. +++|+.|++
T Consensus        96 ~~l~~~~~~~~~~~~~--~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~-l~~L~~L~l  170 (394)
T COG4886          96 PSLDLNLNRLRSNISE--LLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLDL  170 (394)
T ss_pred             ceeeccccccccCchh--hhcccceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhc-ccccccccc
Confidence            3577777665322222  2244778888888887774433 33344 37888888888876 55433333 778888888


Q ss_pred             cCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCc
Q 043452          233 SKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSG  312 (384)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  312 (384)
                      ++|.+.+. +......+.|+.+++++|++. ..+... ....+|+++.+++|.+. ..+..+..+..+..+.+.++.+..
T Consensus       171 ~~N~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~-~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~  246 (394)
T COG4886         171 SFNDLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEI-ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED  246 (394)
T ss_pred             CCchhhhh-hhhhhhhhhhhheeccCCccc-cCchhh-hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee
Confidence            88888733 333336678888888888876 333321 22456888888887533 233445566677777777776652


Q ss_pred             ccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccccccccc
Q 043452          313 RISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQL  367 (384)
Q Consensus       313 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  367 (384)
                      .  ......++.++.|++++|.+.+...  +....+++.|+++++.+....+...
T Consensus       247 ~--~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         247 L--PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             c--cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence            1  2334555678888888887774333  6777888888888887775554443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.87  E-value=1.7e-09  Score=105.16  Aligned_cols=199  Identities=26%  Similarity=0.309  Sum_probs=120.8

Q ss_pred             ccccEEeCcCcccccccchhhhhccccccEEecCCCc--cccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccE
Q 043452            5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNA--IEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY   82 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   82 (384)
                      ...|...+-++.+. .+..  -..+++|+.|-+..+.  +.......|..+|.|+.||+++|.-...+|..++.+-+||+
T Consensus       523 ~~~rr~s~~~~~~~-~~~~--~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAG--SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchh-hccC--CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            34566666666554 3321  2355689999988885  55455556778999999999987766689999999999999


Q ss_pred             EECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC---ccccccccCCCCeEecc
Q 043452           83 LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG---TLGFLQKQHDLKSLDLS  159 (384)
Q Consensus        83 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~  159 (384)
                      |+++++.+....  ..+.++..|.+|++......... ......+++|++|.+.......   ....+.++.+|+.+...
T Consensus       600 L~L~~t~I~~LP--~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  600 LDLSDTGISHLP--SGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             ccccCCCccccc--hHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            999999877442  56778888888888766544333 4455557888888876655322   23334455555555443


Q ss_pred             CCccCCCcHHHHhhhCCCcc----EEEcCCCCCcCcccccCccccCCceEeeecCccC
Q 043452          160 HNKLVGSFPAWLLQHNTKLE----VLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFT  213 (384)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  213 (384)
                      ....  .+...+ ..++.|.    .+.+.++.. ......+..+.+|+.|.+.++.+.
T Consensus       677 ~~s~--~~~e~l-~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  677 ISSV--LLLEDL-LGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             cchh--HhHhhh-hhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCc
Confidence            3221  011111 1222222    222222111 223344556677777777777665

>PLN03150 hypothetical protein; Provisional

Probab=98.84  E-value=1e-08  Score=97.56  Aligned_cols=107  Identities=29%  Similarity=0.448  Sum_probs=87.8

Q ss_pred             cceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEc
Q 043452          275 SLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTV  354 (384)
Q Consensus       275 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  354 (384)
                      .++.|++++|.+.+..+..+..+++|+.|++++|.+.+.++.. +..+++|+.|++++|.+.+.+|+.+..+++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            3778888888888888888888889999999998888666654 566788999999999888888888889999999999


Q ss_pred             cCcccccccccccccC-CCCceEeCcCCC
Q 043452          355 SKNLLEGNIPVQLKNL-EALEILDVSENN  382 (384)
Q Consensus       355 ~~~~~~~~~~~~~~~~-~~L~~l~l~~~~  382 (384)
                      ++|++.+..|..+... .++..+++++|+
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCc
Confidence            9999888888887653 466777777765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.81  E-value=2.9e-09  Score=86.04  Aligned_cols=234  Identities=18%  Similarity=0.163  Sum_probs=155.0

Q ss_pred             CCCccEEEccCCCCCC-----ccccccccCCCCeEeccCCcc---CCCcHHH------HhhhCCCccEEEcCCCCCcCcc
Q 043452          127 TSQLKVLHLRNCNLNG-----TLGFLQKQHDLKSLDLSHNKL---VGSFPAW------LLQHNTKLEVLRLTNNSFTGSL  192 (384)
Q Consensus       127 ~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~---~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~  192 (384)
                      +..+..+++++|.+..     +...+.+-.+|+..++++-..   .++++..      ....||+++.++++.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            5577888888888765     445556667788888776421   2233222      2346788999999888765332


Q ss_pred             ----cccCccccCCceEeeecCccCCCcchhHH------------HhccCCcEEEccCCcCCCc----cchhccCCCCCc
Q 043452          193 ----QLSNSKLDFLHHLDISSNSFTGRLPQNMS------------TILQKLVYLDMSKNKFEGS----ISSSISEMKDLR  252 (384)
Q Consensus       193 ----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~  252 (384)
                          ...+++...|.+|.+.+|.+.......+.            ..-|.|+.+....|++..-    ....+....+|+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence                33456778899999998886532222222            1136799999999887642    222333346899


Q ss_pred             EEEeeccccccccccc----hhccCCcceEEEccCCcccccc----cccccccCCcCeEeCCCCcCCcccchhhhhc---
Q 043452          253 FLDLSRNQFSGELSAP----LLTGCFSLWLLDLSHNSFCGQV----SPKFMNLTQLGWLSLDNNNFSGRISNGFLSS---  321 (384)
Q Consensus       253 ~L~l~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~---  321 (384)
                      ++++..|.|.......    -...+.+|+.|++.+|.++-..    ..+++..+.|+.|.+..|-+.......++..   
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e  268 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE  268 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence            9999999987442221    1234789999999999887433    3455667789999999998875555544433   


Q ss_pred             --cccceEEEcCCCccccc------cchhh-hccCCccEEEccCcccc
Q 043452          322 --ARSLQVLDISNNKLVGQ------IPSWI-GNFSSLALLTVSKNLLE  360 (384)
Q Consensus       322 --~~~L~~L~l~~~~~~~~------~~~~~-~~~~~L~~L~l~~~~~~  360 (384)
                        .|+|..|.+.+|...+.      .+... ..++-|..|.+.||++.
T Consensus       269 ~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         269 KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence              36888899988865432      22222 25777888889999887

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.77  E-value=1.4e-08  Score=92.12  Aligned_cols=174  Identities=33%  Similarity=0.411  Sum_probs=115.3

Q ss_pred             CCccEEEccCCCCCCccccccccC-CCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEe
Q 043452          128 SQLKVLHLRNCNLNGTLGFLQKQH-DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLD  206 (384)
Q Consensus       128 ~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  206 (384)
                      +.++.+.+..+.+..++....... +|+.|+++++.+. .++.. ...+++|+.|+++.|++.+... .....+.|+.++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~~N~l~~l~~-~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLSFNDLSDLPK-LLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhh-hhccccccccccCCchhhhhhh-hhhhhhhhhhee
Confidence            567777777777777777666664 7888888887775 44322 3477888888888877774333 222567788888


Q ss_pred             eecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcc
Q 043452          207 ISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF  286 (384)
Q Consensus       207 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  286 (384)
                      ++++.+. .++..+.. ...|+++.++++.+. ..+..+....++..+.+.++++..  .......+++++.|++++|.+
T Consensus       193 ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         193 LSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQI  267 (394)
T ss_pred             ccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee--ccchhccccccceeccccccc
Confidence            8888776 56654322 445788888777533 334556666777777777776642  133445566788888888777


Q ss_pred             cccccccccccCCcCeEeCCCCcCC
Q 043452          287 CGQVSPKFMNLTQLGWLSLDNNNFS  311 (384)
Q Consensus       287 ~~~~~~~~~~~~~L~~l~l~~~~~~  311 (384)
                      .....  +....+++.++++++.+.
T Consensus       268 ~~i~~--~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         268 SSISS--LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             ccccc--ccccCccCEEeccCcccc
Confidence            65443  666777888888777665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.74  E-value=6.9e-10  Score=98.44  Aligned_cols=196  Identities=28%  Similarity=0.342  Sum_probs=137.4

Q ss_pred             ccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCc
Q 043452          149 KQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLV  228 (384)
Q Consensus       149 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  228 (384)
                      .+..-...+++.|++. ++|..+. .+..|+.+.++.|.+. ..+..+..+..|+.++++.|++. ..+..++. + -|+
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-l-pLk  146 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-L-PLK  146 (722)
T ss_pred             cccchhhhhccccccc-cCchHHH-HHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc-C-cce
Confidence            3344466777888776 6666553 4466777777777666 45667778888889999888887 67766654 4 388


Q ss_pred             EEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCC
Q 043452          229 YLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNN  308 (384)
Q Consensus       229 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  308 (384)
                      .|.+++|+++ ..+..++..+.|..++.+.|.+. ..+. ...++.+|+.|.++.|.+.. .|+.++.++ |.+|++++|
T Consensus       147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slps-ql~~l~slr~l~vrRn~l~~-lp~El~~Lp-Li~lDfScN  221 (722)
T KOG0532|consen  147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPS-QLGYLTSLRDLNVRRNHLED-LPEELCSLP-LIRLDFSCN  221 (722)
T ss_pred             eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchH-HhhhHHHHHHHHHhhhhhhh-CCHHHhCCc-eeeeecccC
Confidence            8888888888 55666667788888888888875 3333 34567788888888887764 344445444 778888888


Q ss_pred             cCCcccchhhhhccccceEEEcCCCccccccchhhhcc---CCccEEEccCcc
Q 043452          309 NFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNF---SSLALLTVSKNL  358 (384)
Q Consensus       309 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~  358 (384)
                      ++. .++.+ |..+..|++|-|.+|.+. .-|..++..   .-.|+|+.+-|+
T Consensus       222 kis-~iPv~-fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  222 KIS-YLPVD-FRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             cee-ecchh-hhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            886 55554 556788888888888887 555555432   235667777774

>PLN03150 hypothetical protein; Provisional

Probab=98.72  E-value=2.2e-08  Score=95.31  Aligned_cols=89  Identities=35%  Similarity=0.614  Sum_probs=76.0

Q ss_pred             cccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEEC
Q 043452            6 NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDL   85 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l   85 (384)
                      .++.|+|+++.+.|.+ +..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+..|..+.++++|++|++
T Consensus       419 ~v~~L~L~~n~L~g~i-p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFI-PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccC-CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            3678888888888766 567888899999999999888888888889999999999999888888888889999999999


Q ss_pred             CCCccccccc
Q 043452           86 SDNYFQGIFY   95 (384)
Q Consensus        86 ~~~~~~~~~~   95 (384)
                      ++|.+++..+
T Consensus       498 s~N~l~g~iP  507 (623)
T PLN03150        498 NGNSLSGRVP  507 (623)
T ss_pred             cCCcccccCC
Confidence            9988877655

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.71  E-value=1.6e-09  Score=96.27  Aligned_cols=191  Identities=23%  Similarity=0.342  Sum_probs=144.6

Q ss_pred             ccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEee
Q 043452          178 LEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLS  257 (384)
Q Consensus       178 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  257 (384)
                      -...+++.|.+. ..+..+..+-.|..+.+..|.+. .++..+.. +..|+.++++.|++. ..+..+..+| |+.+-++
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~-L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICN-LEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhh-hhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence            345677777776 34445566677888888888887 77777766 778999999999888 5566666666 8999999


Q ss_pred             ccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcccc
Q 043452          258 RNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVG  337 (384)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  337 (384)
                      +|+++ ..+...- ..+.|..|+.+.|.+.. .+..+..+.+|+.+.++.|.+. ..+..+.  .-.|..||++.|.+. 
T Consensus       152 NNkl~-~lp~~ig-~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~-~lp~El~--~LpLi~lDfScNkis-  224 (722)
T KOG0532|consen  152 NNKLT-SLPEEIG-LLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLE-DLPEELC--SLPLIRLDFSCNKIS-  224 (722)
T ss_pred             cCccc-cCCcccc-cchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhh-hCCHHHh--CCceeeeecccCcee-
Confidence            99887 4444443 67889999999998874 4556677888999999999887 5666554  357889999999998 


Q ss_pred             ccchhhhccCCccEEEccCccccccccccc---ccCCCCceEeCcCC
Q 043452          338 QIPSWIGNFSSLALLTVSKNLLEGNIPVQL---KNLEALEILDVSEN  381 (384)
Q Consensus       338 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~  381 (384)
                      .+|..|..|+.|+.|-|.+|++. ..|..+   +...-.++|++.-|
T Consensus       225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            88999999999999999999997 444443   33455666666555

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.67  E-value=5.1e-09  Score=84.67  Aligned_cols=215  Identities=22%  Similarity=0.198  Sum_probs=116.3

Q ss_pred             hhccccccEEecCCCccccCCchhhh----cCCCCCEEEeecCccc---C-------ccCccccCCCCccEEECCCCccc
Q 043452           26 ICELKNLIELNLEGNAIEGPLPQCLK----NLTRLKVFGISSNQLS---G-------SLPSVIASLTSLQYLDLSDNYFQ   91 (384)
Q Consensus        26 ~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~---~-------~~~~~~~~~~~L~~L~l~~~~~~   91 (384)
                      +..+..++.+++++|.+......+++    .-.+|+..++++-...   +       ....++.+||+|+..++++|.+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            44577888888888887654444443    4467888887763222   1       12335668888888888888776


Q ss_pred             cccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCcc--------------ccccccCCCCeEe
Q 043452           92 GIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTL--------------GFLQKQHDLKSLD  157 (384)
Q Consensus        92 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~L~~L~  157 (384)
                      ..++..                      ..+.+...+.|++|.+++|++..+.              +....-|.|+++.
T Consensus       106 ~~~~e~----------------------L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vi  163 (388)
T COG5238         106 SEFPEE----------------------LGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVI  163 (388)
T ss_pred             cccchH----------------------HHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence            554311                      1112233456667777666654311              2334456777777


Q ss_pred             ccCCccCC---CcHHHHhhhCCCccEEEcCCCCCcCcc-----cccCccccCCceEeeecCccCCCcchhHH---HhccC
Q 043452          158 LSHNKLVG---SFPAWLLQHNTKLEVLRLTNNSFTGSL-----QLSNSKLDFLHHLDISSNSFTGRLPQNMS---TILQK  226 (384)
Q Consensus       158 l~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~  226 (384)
                      +..|++..   ......+..-.+|+.+.+..|.+....     ...+..+.+|+.|++..|.++......+.   ..++.
T Consensus       164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~  243 (388)
T COG5238         164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL  243 (388)
T ss_pred             eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence            77776531   112222333346677777666665321     11223445666666666666533332222   12345


Q ss_pred             CcEEEccCCcCCCccchhc------cCCCCCcEEEeeccccc
Q 043452          227 LVYLDMSKNKFEGSISSSI------SEMKDLRFLDLSRNQFS  262 (384)
Q Consensus       227 L~~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~  262 (384)
                      |+.|.+.+|-++......+      ...|+|..|....|.+.
T Consensus       244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            6666666665543322211      12356666666665544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=1.8e-08  Score=82.59  Aligned_cols=191  Identities=20%  Similarity=0.104  Sum_probs=101.1

Q ss_pred             ccccCCCCeEeccCCccCC-CcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhcc
Q 043452          147 LQKQHDLKSLDLSHNKLVG-SFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQ  225 (384)
Q Consensus       147 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  225 (384)
                      -..+..++.+++.+|.+++ +-...++..+|.|+.|.++.|++...+..--....+|+.|.+.+..+......+....+|
T Consensus        67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            3445667777777776643 223345566777777777777666443322245567777777777666555555666666


Q ss_pred             CCcEEEccCCcCCC--ccchhc-cCCCCCcEEEeeccccccc-cccchhccCCcceEEEccCCccccccc-ccccccCCc
Q 043452          226 KLVYLDMSKNKFEG--SISSSI-SEMKDLRFLDLSRNQFSGE-LSAPLLTGCFSLWLLDLSHNSFCGQVS-PKFMNLTQL  300 (384)
Q Consensus       226 ~L~~L~l~~~~~~~--~~~~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L  300 (384)
                      .+++|.++.|....  ...... ...+-++++.+.+|...-. ......+-+|++..+-+.+|++-+... .....++.+
T Consensus       147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~  226 (418)
T KOG2982|consen  147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL  226 (418)
T ss_pred             hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence            77777776663221  111111 1223555565555543210 111122234566666555555433221 122334555


Q ss_pred             CeEeCCCCcCCcccchhhhhccccceEEEcCCCcccc
Q 043452          301 GWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVG  337 (384)
Q Consensus       301 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  337 (384)
                      .-|+++.+.+.+.........+++|..|.++++.+.+
T Consensus       227 ~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  227 SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            5566666666544444455556666666666665543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=1.6e-08  Score=82.91  Aligned_cols=166  Identities=17%  Similarity=0.089  Sum_probs=100.8

Q ss_pred             CCCCCCCccEEEccCCCCCCccccc-cccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCc--ccccCc-c
Q 043452          123 NWLPTSQLKVLHLRNCNLNGTLGFL-QKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGS--LQLSNS-K  198 (384)
Q Consensus       123 ~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~-~  198 (384)
                      .+.++|.|+.|+++.|.+......+ ....+|++|.+++..+...-...+...+|+++.|+++.|.....  ...... -
T Consensus        92 ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~  171 (418)
T KOG2982|consen   92 ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW  171 (418)
T ss_pred             HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccccc
Confidence            3456778888888888776644444 46677888888877665455556666778888888887744311  111111 1


Q ss_pred             ccCCceEeeecCccC-CCcchhHHHhccCCcEEEccCCcCCCcc-chhccCCCCCcEEEeeccccccccccchhccCCcc
Q 043452          199 LDFLHHLDISSNSFT-GRLPQNMSTILQKLVYLDMSKNKFEGSI-SSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSL  276 (384)
Q Consensus       199 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  276 (384)
                      .+.++.+..-+|... ......+.+.+|++..+-+..|.+.... -.....+|.+.-|+++.+++........+.+++.|
T Consensus       172 s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l  251 (418)
T KOG2982|consen  172 STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQL  251 (418)
T ss_pred             chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchh
Confidence            234555555555432 0111223445677777777777665432 23344566777777777777655555666677777


Q ss_pred             eEEEccCCcccc
Q 043452          277 WLLDLSHNSFCG  288 (384)
Q Consensus       277 ~~L~l~~~~~~~  288 (384)
                      .-|.+.++++.+
T Consensus       252 ~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  252 VDLRVSENPLSD  263 (418)
T ss_pred             heeeccCCcccc
Confidence            777777777664

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.56  E-value=3.2e-09  Score=97.01  Aligned_cols=126  Identities=29%  Similarity=0.279  Sum_probs=69.2

Q ss_pred             CCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEE
Q 043452          250 DLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLD  329 (384)
Q Consensus       250 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~  329 (384)
                      .|.+.+.+.|.++.  ....+.-++.++.|++++|+++++-  .+..|++|++|+|+.|.+. .++..-..+| .|..|.
T Consensus       165 ~L~~a~fsyN~L~~--mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLVL--MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN  238 (1096)
T ss_pred             hHhhhhcchhhHHh--HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence            45555555555531  2222233566677777777666433  4556667777777776665 3332212232 367777


Q ss_pred             cCCCccccccchhhhccCCccEEEccCcccccccc-cccccCCCCceEeCcCCCC
Q 043452          330 ISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIP-VQLKNLEALEILDVSENNL  383 (384)
Q Consensus       330 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~  383 (384)
                      +++|.++. + ..+.++++|+.||+++|-+.+... .-++.+..|++|++.|||+
T Consensus       239 lrnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  239 LRNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ecccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            77776652 1 224566677777777766654221 1234556666777777664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.54  E-value=4.2e-08  Score=93.22  Aligned_cols=153  Identities=20%  Similarity=0.261  Sum_probs=114.5

Q ss_pred             ccccEEecCCCcccc-CCchhhh-cCCCCCEEEeecCcccC-ccCccccCCCCccEEECCCCccccccccccCCCCCchh
Q 043452           30 KNLIELNLEGNAIEG-PLPQCLK-NLTRLKVFGISSNQLSG-SLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLE  106 (384)
Q Consensus        30 ~~L~~L~l~~~~~~~-~~~~~l~-~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  106 (384)
                      .+|++|+|+|..... .-+..++ .+|.|+.|.+++-.+.. .......++|+|..||++++.++..   ..++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence            689999999865431 2222333 47999999999876652 2345567899999999999988876   7899999999


Q ss_pred             hhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCcc-------ccccccCCCCeEeccCCccCCCcHHHHhhhCCCcc
Q 043452          107 FFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTL-------GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLE  179 (384)
Q Consensus       107 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  179 (384)
                      .|.+.+-..........++.+++|+.|++|........       ..-..+|+|+.|++++..+...+...+...-|+|+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            99988777666566667788999999999877655422       22234789999999998888778888877778887


Q ss_pred             EEEcCC
Q 043452          180 VLRLTN  185 (384)
Q Consensus       180 ~L~l~~  185 (384)
                      .+..-+
T Consensus       279 ~i~~~~  284 (699)
T KOG3665|consen  279 QIAALD  284 (699)
T ss_pred             hhhhhh
Confidence            776443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.50  E-value=1.3e-08  Score=92.58  Aligned_cols=197  Identities=29%  Similarity=0.265  Sum_probs=95.0

Q ss_pred             ccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCc
Q 043452          149 KQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLV  228 (384)
Q Consensus       149 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  228 (384)
                      .+..++.+.+..+.+. .+. .....+.+++.+++.++.+..... .+..+++|++|++++|.|........   ++.|+
T Consensus        70 ~l~~l~~l~l~~n~i~-~~~-~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~l~~---l~~L~  143 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIA-KIL-NHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEGLST---LTLLK  143 (414)
T ss_pred             HhHhHHhhccchhhhh-hhh-cccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccchhh---ccchh
Confidence            3344444544444443 111 112344666666666666653322 14456666666666666653222211   33466


Q ss_pred             EEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCC
Q 043452          229 YLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNN  308 (384)
Q Consensus       229 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  308 (384)
                      .|++.+|.+...  ..+..+++|+.+++++|.+....... ...+.+++.+++.+|.+.....  +..+..+..+++..+
T Consensus       144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n  218 (414)
T KOG0531|consen  144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDN  218 (414)
T ss_pred             hheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccc
Confidence            666666666533  22333566666666666655222211 2345566666666665543221  222333344455555


Q ss_pred             cCCcccchhhhhccc--cceEEEcCCCccccccchhhhccCCccEEEccCcccc
Q 043452          309 NFSGRISNGFLSSAR--SLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE  360 (384)
Q Consensus       309 ~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  360 (384)
                      .++.....  . ...  .|+.+.+++|.+. ..+..+..+..+..+++.++++.
T Consensus       219 ~i~~~~~l--~-~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  219 KISKLEGL--N-ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             cceeccCc--c-cchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence            54411111  0 111  2566666666655 22244455666666666666654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.47  E-value=2e-08  Score=93.89  Aligned_cols=134  Identities=25%  Similarity=0.160  Sum_probs=77.0

Q ss_pred             cccCCCCeEeccCCc-cCCCcHHHHhhhCCCccEEEcCCC-CCcCc----ccccCccccCCceEeeecCc-cCCCcchhH
Q 043452          148 QKQHDLKSLDLSHNK-LVGSFPAWLLQHNTKLEVLRLTNN-SFTGS----LQLSNSKLDFLHHLDISSNS-FTGRLPQNM  220 (384)
Q Consensus       148 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~  220 (384)
                      ..++.|+.+.+.++. +++.....+...++.|+.|+++++ .....    .......+++|+.++++++. +++.....+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            346777777777763 332223444557777777777752 11111    11223355777777777777 665666666


Q ss_pred             HHhccCCcEEEccCCc-CCCc-cchhccCCCCCcEEEeeccccc-cccccchhccCCcceEEEc
Q 043452          221 STILQKLVYLDMSKNK-FEGS-ISSSISEMKDLRFLDLSRNQFS-GELSAPLLTGCFSLWLLDL  281 (384)
Q Consensus       221 ~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l  281 (384)
                      ...|++|+.|.+.+|. +++. .......+++|++|++++|... +........+|++++.+.+
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            6667777777777665 4443 2333445677788887777543 2222333444666665543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.45  E-value=1.5e-08  Score=92.07  Aligned_cols=109  Identities=26%  Similarity=0.289  Sum_probs=53.7

Q ss_pred             CCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCc
Q 043452          124 WLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLH  203 (384)
Q Consensus       124 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  203 (384)
                      +..+.+++.+++.++.+..+...+..+++|++|++++|.++ .+..  +..++.|+.|++.+|.++....  +..++.|+
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELNLSGNLISDISG--LESLKSLK  165 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccc-cccc--hhhccchhhheeccCcchhccC--Cccchhhh
Confidence            34445666666666666554444555666666666666554 2222  2233446666666655543221  22245555


Q ss_pred             eEeeecCccCCCcchhHHHhccCCcEEEccCCcCC
Q 043452          204 HLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFE  238 (384)
Q Consensus       204 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  238 (384)
                      .++++++.+. .........+.+++.+.+.++.+.
T Consensus       166 ~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  166 LLDLSYNRIV-DIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             cccCCcchhh-hhhhhhhhhccchHHHhccCCchh
Confidence            5555555554 222200122445555555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.43  E-value=4.8e-08  Score=92.82  Aligned_cols=154  Identities=22%  Similarity=0.244  Sum_probs=113.9

Q ss_pred             ccccEEeCcCcccccccchhhh-hccccccEEecCCCcccc-CCchhhhcCCCCCEEEeecCcccCccCccccCCCCccE
Q 043452            5 KNLKALDLSYTGINGSLENQGI-CELKNLIELNLEGNAIEG-PLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY   82 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   82 (384)
                      .+|++|++++...-..-++..+ ..+|.|+.|.+++-.+.. .+......+|+|..||++++.++..  ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            4688899988643223333334 468999999999987753 3344556789999999999988844  67889999999


Q ss_pred             EECCCCccccccccccCCCCCchhhhhhhcccCcee-----eccCCCCCCCCccEEEccCCCCCC--ccccccccCCCCe
Q 043452           83 LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLE-----VETENWLPTSQLKVLHLRNCNLNG--TLGFLQKQHDLKS  155 (384)
Q Consensus        83 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~  155 (384)
                      |.+.+-.+........+.++++|++|+++.......     ...+....+|+|+.|+.+++.+..  +...+...|+|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            999988887766667888899999999987654332     233445668999999999988877  5556667777777


Q ss_pred             EeccC
Q 043452          156 LDLSH  160 (384)
Q Consensus       156 L~l~~  160 (384)
                      +..-+
T Consensus       280 i~~~~  284 (699)
T KOG3665|consen  280 IAALD  284 (699)
T ss_pred             hhhhh
Confidence            76543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.35  E-value=1.2e-06  Score=65.83  Aligned_cols=124  Identities=18%  Similarity=0.271  Sum_probs=64.2

Q ss_pred             hhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhcc
Q 043452          243 SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSA  322 (384)
Q Consensus       243 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~  322 (384)
                      ..+..+++|+.+.+.. .+. .+....|.++++|+.+.+.++ +......+|..++.++.+.+.+ .+. .+....+..+
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~   80 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNC   80 (129)
T ss_dssp             TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-
T ss_pred             HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccc
Confidence            4566677777777764 333 455666777777888887764 5555566777777788888865 333 4555567777


Q ss_pred             ccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCc
Q 043452          323 RSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALE  374 (384)
Q Consensus       323 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  374 (384)
                      ++++.+.+..+ +......+|.++ +|+.+.+.+ .+..+....|.+|++|+
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            88888888765 554566677777 888888876 44446667788888775

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.30  E-value=8.1e-07  Score=51.93  Aligned_cols=37  Identities=32%  Similarity=0.583  Sum_probs=22.3

Q ss_pred             cceEEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452          324 SLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG  361 (384)
Q Consensus       324 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  361 (384)
                      +|++|++++|+++ .+|+.+.++++|+.|++++|++++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            5666666666666 445556666666666666666653

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.29  E-value=1.7e-08  Score=92.49  Aligned_cols=129  Identities=33%  Similarity=0.330  Sum_probs=91.4

Q ss_pred             CCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEE
Q 043452          152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLD  231 (384)
Q Consensus       152 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  231 (384)
                      +|...+.+.|.+.  ........++.++.|+++.|++++..  .+..+++|++||+++|.+. .++..-..+|. |+.|+
T Consensus       165 ~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLN  238 (1096)
T ss_pred             hHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeee
Confidence            4556666666553  34444556788888888888887544  6778888888888888887 56544434454 88888


Q ss_pred             ccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccc
Q 043452          232 MSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCG  288 (384)
Q Consensus       232 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  288 (384)
                      +++|.++.  ...+.++.+|+.|+++.|-+.+......++.+..|+.|++.+|++..
T Consensus       239 lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  239 LRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             ecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            88887763  35567788888888888877655455556667788888888887753

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.25  E-value=3.5e-07  Score=85.52  Aligned_cols=34  Identities=26%  Similarity=0.167  Sum_probs=21.4

Q ss_pred             ccEEEccCccccc-cccccccc-CCCCceEeCcCCC
Q 043452          349 LALLTVSKNLLEG-NIPVQLKN-LEALEILDVSENN  382 (384)
Q Consensus       349 L~~L~l~~~~~~~-~~~~~~~~-~~~L~~l~l~~~~  382 (384)
                      ++.|+++.|.... ........ +..++.+++++|+
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~  438 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR  438 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence            5788888886432 22222322 7778888888775

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.25  E-value=1.1e-07  Score=68.99  Aligned_cols=109  Identities=26%  Similarity=0.314  Sum_probs=57.2

Q ss_pred             CCcEEEeeccccccccc--cchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceE
Q 043452          250 DLRFLDLSRNQFSGELS--APLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQV  327 (384)
Q Consensus       250 ~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~  327 (384)
                      .+..++++.|++- .+.  .....+...|..+++++|.+.+..+.--.+++.++++++.+|++. .++.. +..++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE-~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEE-LAAMPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHH-HhhhHHhhh
Confidence            3445556666543 111  112223445555666666655433333334455666666666665 44444 445566666


Q ss_pred             EEcCCCccccccchhhhccCCccEEEccCcccccc
Q 043452          328 LDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGN  362 (384)
Q Consensus       328 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  362 (384)
                      |+++.|.+. ..|..+..+.+|-.|+..+|....+
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ei  138 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEI  138 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCccccC
Confidence            666666655 4455555566666666666655533

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.11  E-value=6.6e-06  Score=64.06  Aligned_cols=102  Identities=25%  Similarity=0.244  Sum_probs=68.9

Q ss_pred             cceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccc-cchhhhccCCccEEE
Q 043452          275 SLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQ-IPSWIGNFSSLALLT  353 (384)
Q Consensus       275 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~  353 (384)
                      ....+++++|.+..  ...|..++.|.+|.+++|.|+ .+.+.+....+.|..|.+.+|++... -..-+..|+.|++|.
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            45566777776642  234556777888888888887 66666666677888888888866532 123456788888888


Q ss_pred             ccCcccccc-ccc--ccccCCCCceEeCc
Q 043452          354 VSKNLLEGN-IPV--QLKNLEALEILDVS  379 (384)
Q Consensus       354 l~~~~~~~~-~~~--~~~~~~~L~~l~l~  379 (384)
                      +-+|++++. -..  .++.+|+|+.||-.
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehh
Confidence            888887752 222  25678888888754

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.09  E-value=8.3e-06  Score=61.22  Aligned_cols=120  Identities=15%  Similarity=0.239  Sum_probs=45.5

Q ss_pred             hccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCe
Q 043452          223 ILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGW  302 (384)
Q Consensus       223 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  302 (384)
                      .+++|+.+.+.. .+.......+..+++++.+.+.++ +. ......|.++++++.+.+.+ .+.......|..+++|+.
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccccc
Confidence            344555555543 233333444555555666665553 22 34444555555566666644 232233344555666666


Q ss_pred             EeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCcc
Q 043452          303 LSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLA  350 (384)
Q Consensus       303 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  350 (384)
                      +.+..+ +. .+....+..+ .++.+.+.. .+......+|.+|++|+
T Consensus        86 i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   86 IDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             EEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            666543 33 4444455554 666666655 33334445666665553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.09  E-value=4.7e-06  Score=48.68  Aligned_cols=37  Identities=38%  Similarity=0.572  Sum_probs=26.3

Q ss_pred             CCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452          347 SSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       347 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      ++|++|++++|++++ +|..+.+|++|+.|++++|+|+
T Consensus         1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            467888888888874 4445778888888888888775

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.93  E-value=3.2e-05  Score=60.36  Aligned_cols=107  Identities=22%  Similarity=0.269  Sum_probs=70.5

Q ss_pred             CCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCc-cchhccCCCCCcE
Q 043452          175 NTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGS-ISSSISEMKDLRF  253 (384)
Q Consensus       175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~  253 (384)
                      ..+...+++++|.+..  ...+.+++.|..|.+.+|+++ .+...+...+++|..|.+.+|.+... ....+..||.|+.
T Consensus        41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            3456667777665542  223556777888888888887 66666666677888888888776532 2344567788888


Q ss_pred             EEeeccccccc--cccchhccCCcceEEEccCC
Q 043452          254 LDLSRNQFSGE--LSAPLLTGCFSLWLLDLSHN  284 (384)
Q Consensus       254 L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~  284 (384)
                      |.+-+|++...  +.......+|+|+.||+..-
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            88888876522  23344556777777777654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.82  E-value=2.1e-06  Score=62.48  Aligned_cols=136  Identities=19%  Similarity=0.170  Sum_probs=85.0

Q ss_pred             CCcEEEccCCcCCC--ccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeE
Q 043452          226 KLVYLDMSKNKFEG--SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWL  303 (384)
Q Consensus       226 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  303 (384)
                      .+..++++.|.+-.  .....+.....|+.+++++|.+. ..+..+..+++.++.|++.+|.+.+. |..+..++.|+.+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSL  105 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhc
Confidence            45667777776541  12233344567777888888876 55666666677888888888888754 4447788888888


Q ss_pred             eCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccc
Q 043452          304 SLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQ  366 (384)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  366 (384)
                      +++.|.+. ..+..++. +.++..|+..+|.... ++..+-..+..-..++.+++..+..+..
T Consensus       106 Nl~~N~l~-~~p~vi~~-L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lgnepl~~~~~~k  165 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAP-LIKLDMLDSPENARAE-IDVDLFYSSLPALIKLGNEPLGDETKKK  165 (177)
T ss_pred             ccccCccc-cchHHHHH-HHhHHHhcCCCCcccc-CcHHHhccccHHHHHhcCCcccccCccc
Confidence            88888876 44444444 5777788888887663 3333222222223344555666555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.81  E-value=9.4e-07  Score=72.09  Aligned_cols=82  Identities=26%  Similarity=0.303  Sum_probs=60.6

Q ss_pred             cccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhh
Q 043452           29 LKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFF  108 (384)
Q Consensus        29 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l  108 (384)
                      +.+.+.|+.+||.++++  ....+++.|+.|.++-|++++..|  +.+|++|++|.|..|.|.+......++++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            55677888888877754  344577888888888888774433  67888888888888888777666778888888888


Q ss_pred             hhhccc
Q 043452          109 MLSLVN  114 (384)
Q Consensus       109 ~l~~~~  114 (384)
                      .+..+.
T Consensus        94 WL~ENP   99 (388)
T KOG2123|consen   94 WLDENP   99 (388)
T ss_pred             hhccCC
Confidence            776543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.59  E-value=1.2e-05  Score=65.29  Aligned_cols=103  Identities=24%  Similarity=0.253  Sum_probs=67.5

Q ss_pred             ccEEeCcCccc-ccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecC--cccCccCccccCCCCccEE
Q 043452            7 LKALDLSYTGI-NGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSN--QLSGSLPSVIASLTSLQYL   83 (384)
Q Consensus         7 L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L   83 (384)
                      .+.+.+.+|.- .|.+ ......+.+|+.+++.+..++.  ...+..+|+|++|.++.+  .+..-+.-....+|+|+++
T Consensus        20 v~~l~lD~~~s~~g~~-~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l   96 (260)
T KOG2739|consen   20 VDELFLDNARSGAGKL-GGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVL   96 (260)
T ss_pred             hhhhhcchhhhcCCCc-ccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEE
Confidence            34455555532 2334 3445667888888888887763  245677899999999998  5554444455677999999


Q ss_pred             ECCCCccccccccccCCCCCchhhhhhhc
Q 043452           84 DLSDNYFQGIFYLSSLGNHSNLEFFMLSL  112 (384)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~  112 (384)
                      ++++|++........++.+.+|..|++..
T Consensus        97 ~ls~Nki~~lstl~pl~~l~nL~~Ldl~n  125 (260)
T KOG2739|consen   97 NLSGNKIKDLSTLRPLKELENLKSLDLFN  125 (260)
T ss_pred             eecCCccccccccchhhhhcchhhhhccc
Confidence            99999887544334455555555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.52  E-value=0.0005  Score=60.91  Aligned_cols=54  Identities=26%  Similarity=0.295  Sum_probs=25.1

Q ss_pred             ccccccEEecCCCccccCCchhhhcCC-CCCEEEeecCcccCccCccccCCCCccEEECCCC
Q 043452           28 ELKNLIELNLEGNAIEGPLPQCLKNLT-RLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDN   88 (384)
Q Consensus        28 ~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   88 (384)
                      .+++++.|++++|.+. .+|    .+| +|++|.+++|.-....|+.+  .++|++|.+++|
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            3455555555555444 333    122 35555555543322334322  235555555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=1.2e-05  Score=65.80  Aligned_cols=79  Identities=20%  Similarity=0.154  Sum_probs=38.0

Q ss_pred             CCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEE
Q 043452          250 DLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLD  329 (384)
Q Consensus       250 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~  329 (384)
                      +.++|+..||.++   ...+..+++.|++|.++-|++...  ..+..|+.|++|+|+.|.|.+...-.-+.++|+|+.|.
T Consensus        20 ~vkKLNcwg~~L~---DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLD---DISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCcc---HHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3444444444443   112223345555555555555432  23445666666666666655222223344455666666


Q ss_pred             cCCC
Q 043452          330 ISNN  333 (384)
Q Consensus       330 l~~~  333 (384)
                      |..|
T Consensus        95 L~EN   98 (388)
T KOG2123|consen   95 LDEN   98 (388)
T ss_pred             hccC
Confidence            6655

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.43  E-value=0.00064  Score=60.28  Aligned_cols=74  Identities=11%  Similarity=0.047  Sum_probs=48.6

Q ss_pred             hccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCe
Q 043452          223 ILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGW  302 (384)
Q Consensus       223 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  302 (384)
                      .+..+++|++++|.++.. | .+  .++|+.|.+.+|.-....+..+   .++|+.|++++|......|      ..|+.
T Consensus        50 ~~~~l~~L~Is~c~L~sL-P-~L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP------~sLe~  116 (426)
T PRK15386         50 EARASGRLYIKDCDIESL-P-VL--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLP------ESVRS  116 (426)
T ss_pred             HhcCCCEEEeCCCCCccc-C-CC--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccc------cccce
Confidence            378999999999987744 3 22  2479999999875432333222   4689999999984322333      34666


Q ss_pred             EeCCCCc
Q 043452          303 LSLDNNN  309 (384)
Q Consensus       303 l~l~~~~  309 (384)
                      |++.++.
T Consensus       117 L~L~~n~  123 (426)
T PRK15386        117 LEIKGSA  123 (426)
T ss_pred             EEeCCCC
Confidence            6666544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.08  E-value=0.00036  Score=56.90  Aligned_cols=105  Identities=23%  Similarity=0.246  Sum_probs=72.4

Q ss_pred             hccCCcceEEEccCCcccccccccccccCCcCeEeCCCC--cCCcccchhhhhccccceEEEcCCCcccc-ccchhhhcc
Q 043452          270 LTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNN--NFSGRISNGFLSSARSLQVLDISNNKLVG-QIPSWIGNF  346 (384)
Q Consensus       270 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~  346 (384)
                      ......|+.+++.+..++.  ...+..+++|++|.++.|  .+.+.. ......+|+|+++.+++|.+.. .....+..+
T Consensus        39 ~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l-~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l  115 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGL-EVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL  115 (260)
T ss_pred             cccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccc-eehhhhCCceeEEeecCCccccccccchhhhh
Confidence            3345667777777776653  234567889999999999  444222 2345556999999999997763 122345778


Q ss_pred             CCccEEEccCcccccc---cccccccCCCCceEe
Q 043452          347 SSLALLTVSKNLLEGN---IPVQLKNLEALEILD  377 (384)
Q Consensus       347 ~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~l~  377 (384)
                      .+|..|++.+|..+..   -...|.-+|+|+++|
T Consensus       116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             cchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            8899999999987652   223366688888875

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.00  E-value=0.00015  Score=56.75  Aligned_cols=86  Identities=20%  Similarity=0.131  Sum_probs=63.3

Q ss_pred             cceEEEccCCcccccccccccccCCcCeEeCCCCcC-CcccchhhhhccccceEEEcCCC-ccccccchhhhccCCccEE
Q 043452          275 SLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNF-SGRISNGFLSSARSLQVLDISNN-KLVGQIPSWIGNFSSLALL  352 (384)
Q Consensus       275 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L  352 (384)
                      .++.++-+++.+..+.-+.+..++.++.|.+.+|.- .+.....+....++|+.|++++| +|++.....+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            366777777777777777777788888888888753 32222233334578999999999 7888888888899999999


Q ss_pred             EccCcccc
Q 043452          353 TVSKNLLE  360 (384)
Q Consensus       353 ~l~~~~~~  360 (384)
                      .+.+-+-.
T Consensus       182 ~l~~l~~v  189 (221)
T KOG3864|consen  182 HLYDLPYV  189 (221)
T ss_pred             HhcCchhh
Confidence            88886544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.40  E-value=0.00062  Score=53.37  Aligned_cols=82  Identities=17%  Similarity=0.115  Sum_probs=63.1

Q ss_pred             CCcCeEeCCCCcCCcccchhhhhccccceEEEcCCC-ccccccchhhh-ccCCccEEEccCc-ccccccccccccCCCCc
Q 043452          298 TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNN-KLVGQIPSWIG-NFSSLALLTVSKN-LLEGNIPVQLKNLEALE  374 (384)
Q Consensus       298 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~  374 (384)
                      ..++.++-+++.|....... +..++.++.|.+.+| .+.+...+.++ ..++|+.|+|++| ++++.....+.++++|+
T Consensus       101 ~~IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             ceEEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            35788999998887444333 455688999999999 56655555554 4679999999999 57777888899999999


Q ss_pred             eEeCcC
Q 043452          375 ILDVSE  380 (384)
Q Consensus       375 ~l~l~~  380 (384)
                      .|.+.+
T Consensus       180 ~L~l~~  185 (221)
T KOG3864|consen  180 RLHLYD  185 (221)
T ss_pred             HHHhcC
Confidence            998875

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.35  E-value=5.8e-05  Score=69.08  Aligned_cols=37  Identities=30%  Similarity=0.430  Sum_probs=18.2

Q ss_pred             ceEEEcCCCccccc----cchhhhccCCccEEEccCccccc
Q 043452          325 LQVLDISNNKLVGQ----IPSWIGNFSSLALLTVSKNLLEG  361 (384)
Q Consensus       325 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~  361 (384)
                      ++++++..|.+++.    +...+..++.++++.++.|++.+
T Consensus       264 l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  264 LRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            35555555555432    22333445555555555555543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.88  E-value=0.0052  Score=29.65  Aligned_cols=21  Identities=38%  Similarity=0.542  Sum_probs=12.2

Q ss_pred             CccEEEccCccccccccccccc
Q 043452          348 SLALLTVSKNLLEGNIPVQLKN  369 (384)
Q Consensus       348 ~L~~L~l~~~~~~~~~~~~~~~  369 (384)
                      +|+.|++++|+++ .+|..|.+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3666677777666 44444543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.69  E-value=0.00017  Score=66.02  Aligned_cols=183  Identities=26%  Similarity=0.226  Sum_probs=84.2

Q ss_pred             hhhhhhhcccCce---eeccCCCCCCCCccEEEccCCCCCC-----cccccccc-CCCCeEeccCCccCCCc----HHHH
Q 043452          105 LEFFMLSLVNNTL---EVETENWLPTSQLKVLHLRNCNLNG-----TLGFLQKQ-HDLKSLDLSHNKLVGSF----PAWL  171 (384)
Q Consensus       105 L~~l~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~-~~L~~L~l~~~~~~~~~----~~~~  171 (384)
                      +..+.+..+....   ......+...+.|+.|+++++.+.+     +...+... +.++.|++..|.++++.    ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5555555443322   2223344555666666666666654     12222222 44555666666554322    2222


Q ss_pred             hhhCCCccEEEcCCCCCcCc----cccc----CccccCCceEeeecCccCCCcchhHHHh---ccC-CcEEEccCCcCCC
Q 043452          172 LQHNTKLEVLRLTNNSFTGS----LQLS----NSKLDFLHHLDISSNSFTGRLPQNMSTI---LQK-LVYLDMSKNKFEG  239 (384)
Q Consensus       172 ~~~~~~L~~L~l~~~~~~~~----~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~-L~~L~l~~~~~~~  239 (384)
                      . ..+.++.++++.|.+...    ....    +....++++|.+.++.++......+...   .+. +..+++..|.+.+
T Consensus       169 ~-~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  169 E-KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             h-cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            2 245566666666554311    1111    1234456666666665553332222111   122 4445666555543


Q ss_pred             cc----chhccCC-CCCcEEEeecccccccccc---chhccCCcceEEEccCCcccc
Q 043452          240 SI----SSSISEM-KDLRFLDLSRNQFSGELSA---PLLTGCFSLWLLDLSHNSFCG  288 (384)
Q Consensus       240 ~~----~~~~~~~-~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~  288 (384)
                      ..    ...+..+ +.++++++..|.+++....   .....++.++++.+.+|.+.+
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            31    1222222 4556666666666533222   233345566666666666554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.68  E-value=0.019  Score=27.69  Aligned_cols=21  Identities=48%  Similarity=0.700  Sum_probs=12.7

Q ss_pred             cceEEEcCCCccccccchhhhc
Q 043452          324 SLQVLDISNNKLVGQIPSWIGN  345 (384)
Q Consensus       324 ~L~~L~l~~~~~~~~~~~~~~~  345 (384)
                      +|+.|++++|+++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566777777666 55554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.58  E-value=0.023  Score=25.35  Aligned_cols=12  Identities=50%  Similarity=0.700  Sum_probs=5.2

Q ss_pred             CCceEeCcCCCC
Q 043452          372 ALEILDVSENNL  383 (384)
Q Consensus       372 ~L~~l~l~~~~~  383 (384)
                      +|+.|++++|++
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            455555555554

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.93  E-value=0.025  Score=27.86  Aligned_cols=13  Identities=31%  Similarity=0.445  Sum_probs=4.4

Q ss_pred             CccEEEccCcccc
Q 043452          348 SLALLTVSKNLLE  360 (384)
Q Consensus       348 ~L~~L~l~~~~~~  360 (384)
                      +|+.|+|++|+++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3344444444433

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.76  E-value=0.015  Score=28.66  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=15.2

Q ss_pred             cccceEEEcCCCccccccchhhh
Q 043452          322 ARSLQVLDISNNKLVGQIPSWIG  344 (384)
Q Consensus       322 ~~~L~~L~l~~~~~~~~~~~~~~  344 (384)
                      +++|++|++++|.+.+..+.+++
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            46788888888888877666654

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.01  E-value=0.28  Score=24.53  Aligned_cols=21  Identities=38%  Similarity=0.507  Sum_probs=10.9

Q ss_pred             ccccEEeCcCcccccccchhhh
Q 043452            5 KNLKALDLSYTGINGSLENQGI   26 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~   26 (384)
                      ++|++|+|++|.+. .++...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45555666555554 4544433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.01  E-value=0.28  Score=24.53  Aligned_cols=21  Identities=38%  Similarity=0.507  Sum_probs=10.9

Q ss_pred             ccccEEeCcCcccccccchhhh
Q 043452            5 KNLKALDLSYTGINGSLENQGI   26 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~   26 (384)
                      ++|++|+|++|.+. .++...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45555666555554 4544433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.70  E-value=0.029  Score=45.34  Aligned_cols=59  Identities=17%  Similarity=0.110  Sum_probs=30.4

Q ss_pred             ccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452          323 RSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL  383 (384)
Q Consensus       323 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  383 (384)
                      +.++.++++.|.+. ..|..+.+...++.+++..|... ..|..+++.|++++++.-+++|
T Consensus        65 t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   65 TRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             HHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence            44555555555544 44444455555555555555444 4455555555555555555544

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=86.10  E-value=0.41  Score=23.99  Aligned_cols=10  Identities=30%  Similarity=0.222  Sum_probs=4.0

Q ss_pred             CccEEEccCc
Q 043452          348 SLALLTVSKN  357 (384)
Q Consensus       348 ~L~~L~l~~~  357 (384)
                      +|++|+|++|
T Consensus         3 ~L~~L~l~~C   12 (26)
T smart00367        3 NLRELDLSGC   12 (26)
T ss_pred             CCCEeCCCCC
Confidence            3334444443

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=83.03  E-value=0.9  Score=23.27  Aligned_cols=23  Identities=22%  Similarity=0.325  Sum_probs=12.4

Q ss_pred             cCCceEeeecCccCCCcchhHHH
Q 043452          200 DFLHHLDISSNSFTGRLPQNMST  222 (384)
Q Consensus       200 ~~L~~L~l~~~~~~~~~~~~~~~  222 (384)
                      ++|++|++++|.+..+....+++
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~   24 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAE   24 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHH
Confidence            34566666666665444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	384
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-30
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-04
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-30
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-04
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-12
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		2e-07
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		8e-07
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		1e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		4e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		7e-05
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		2e-04
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		2e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		2e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		4e-04
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		6e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		6e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		9e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  129 bits (324), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 128/413 (30%), Positives = 200/413 (48%), Gaps = 47/413 (11%)
Query: 3   KFKNLKALDLSYTGINGS-----LENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLK 57
           K  +L+ LDLS   I+G+     + + G  ELK+L    + GN I G +   +     L+
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVD--VSRCVNLE 200
Query: 58  VFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL 117
              +SSN  S  +P  +   ++LQ+LD+S N   G F   S    +  E  +L++ +N  
Sbjct: 201 FLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF---SRAISTCTELKLLNISSNQF 256
Query: 118 EVETENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHD-LKSLDLSHNKLVGSFPAWLLQHN 175
            V     LP   L+ L L      G +  FL    D L  LDLS N   G+ P +    +
Sbjct: 257 -VGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 176 TKLEVLRLTNNSFTGSLQLSNS-KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSK 234
               +   +NN F+G L +    K+  L  LD+S N F+G LP++++ +   L+ LD+S 
Sbjct: 316 LLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 374
Query: 235 NKFEGSISSSISE--MKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSP 292
           N F G I  ++ +     L+ L L  N F+G++  P L+ C  L  L LS N   G +  
Sbjct: 375 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI-PPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 293 KFMNLTQLG----WLS--------------------LDNNNFSGRISNGFLSSARSLQVL 328
              +L++L     WL+                    LD N+ +G I +G LS+  +L  +
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWI 492
Query: 329 DISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSEN 381
            +SNN+L G+IP WIG   +LA+L +S N   GNIP +L +  +L  LD++ N
Sbjct: 493 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 61/121 (50%), Gaps = 19/121 (15%)
Query: 275 SLWLLDLSHNSFCGQVSPKFMNLTQLG------WLSLDNN--NFSGRISNGFLSSARSLQ 326
           SL  LDLS NS  G V+     LT LG      +L++ +N  +F G++S G      SL+
Sbjct: 98  SLTSLDLSRNSLSGPVT----TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL--KLNSLE 151
Query: 327 VLDISNNKLVGQ-IPSWI--GNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383
           VLD+S N + G  +  W+       L  L +S N + G+  V +     LE LDVS NN 
Sbjct: 152 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLDVSSNNF 209
Query: 384 S 384
           S
Sbjct: 210 S 210

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  129 bits (323), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 128/413 (30%), Positives = 200/413 (48%), Gaps = 47/413 (11%)
Query: 3   KFKNLKALDLSYTGINGS-----LENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLK 57
           K  +L+ LDLS   I+G+     + + G  ELK+L    + GN I G +   +     L+
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVD--VSRCVNLE 203
Query: 58  VFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL 117
              +SSN  S  +P  +   ++LQ+LD+S N   G F   S    +  E  +L++ +N  
Sbjct: 204 FLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF---SRAISTCTELKLLNISSNQF 259
Query: 118 EVETENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHD-LKSLDLSHNKLVGSFPAWLLQHN 175
            V     LP   L+ L L      G +  FL    D L  LDLS N   G+ P +    +
Sbjct: 260 -VGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 176 TKLEVLRLTNNSFTGSLQLSNS-KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSK 234
               +   +NN F+G L +    K+  L  LD+S N F+G LP++++ +   L+ LD+S 
Sbjct: 319 LLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377
Query: 235 NKFEGSISSSISE--MKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSP 292
           N F G I  ++ +     L+ L L  N F+G++  P L+ C  L  L LS N   G +  
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI-PPTLSNCSELVSLHLSFNYLSGTIPS 436
Query: 293 KFMNLTQLG----WLS--------------------LDNNNFSGRISNGFLSSARSLQVL 328
              +L++L     WL+                    LD N+ +G I +G LS+  +L  +
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWI 495
Query: 329 DISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSEN 381
            +SNN+L G+IP WIG   +LA+L +S N   GNIP +L +  +L  LD++ N
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 61/121 (50%), Gaps = 19/121 (15%)
Query: 275 SLWLLDLSHNSFCGQVSPKFMNLTQLG------WLSLDNN--NFSGRISNGFLSSARSLQ 326
           SL  LDLS NS  G V+     LT LG      +L++ +N  +F G++S G      SL+
Sbjct: 101 SLTSLDLSRNSLSGPVT----TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL--KLNSLE 154
Query: 327 VLDISNNKLVGQ-IPSWI--GNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383
           VLD+S N + G  +  W+       L  L +S N + G+  V +     LE LDVS NN 
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLDVSSNNF 212
Query: 384 S 384
           S
Sbjct: 213 S 213

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 106/211 (50%), Gaps = 8/211 (3%)
Query: 178 LEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDM----S 233
           L      N ++ G L  ++++   +++LD+S  +     P  + + L  L YL+      
Sbjct: 28  LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP--IPSSLANLPYLNFLYIGG 85
Query: 234 KNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK 293
            N   G I  +I+++  L +L ++    SG +    L+   +L  LD S+N+  G + P 
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLT 353
             +L  L  ++ D N  SG I + + S ++    + IS N+L G+IP    N  +LA + 
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD 203
Query: 354 VSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
           +S+N+LEG+  V   + +  + + +++N+L+
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 116/428 (27%), Positives = 166/428 (38%), Gaps = 73/428 (17%)
Query: 19  GSLENQGICELKNLIELNLEGNAIEG-PLPQCLKNLTRLKVFGISSNQLSGSLPSVIASL 77
            SLEN  I  LK L ELN+  N I+   LP+   NLT L+   +SSN++     + +  L
Sbjct: 137 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196
Query: 78  ---------------------------TSLQYLDLSDNY---------FQGI-------F 94
                                        L  L L +N+          QG+        
Sbjct: 197 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 256
Query: 95  YLSSLGNHSNLEFF----MLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQ 150
            L    N  NLE F    +  L N T+E     +L      ++ L NC  N +   L   
Sbjct: 257 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV 316
Query: 151 HDLKSLDLSHN------KLV----GSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLD 200
              +  D S+N      +LV    G FP   L+      + RLT  S  G    S   L 
Sbjct: 317 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK-----SLKRLTFTSNKGGNAFSEVDLP 371
Query: 201 FLHHLDISSN--SFTGRLPQ-NMSTILQKLVYLDMSKNKFEGSI--SSSISEMKDLRFLD 255
            L  LD+S N  SF G   Q +  TI   L YLD+S   F G I  SS+   ++ L  LD
Sbjct: 372 SLEFLDLSRNGLSFKGCCSQSDFGTI--SLKYLDLS---FNGVITMSSNFLGLEQLEHLD 426
Query: 256 LSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRIS 315
              +         +     +L  LD+SH       +  F  L+ L  L +  N+F     
Sbjct: 427 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 486
Query: 316 NGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEI 375
               +  R+L  LD+S  +L    P+   + SSL +L +S N          K L +L++
Sbjct: 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546
Query: 376 LDVSENNL 383
           LD S N++
Sbjct: 547 LDYSLNHI 554

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 115/428 (26%), Positives = 165/428 (38%), Gaps = 73/428 (17%)
Query: 19  GSLENQGICELKNLIELNLEGNAIEG-PLPQCLKNLTRLKVFGISSNQLSGSLPSVIASL 77
            SLEN  I  LK L ELN+  N I+   LP+   NLT L+   +SSN++     + +  L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Query: 78  ---------------------------TSLQYLDLSDNY---------FQGI-------F 94
                                        L  L L +N+          QG+        
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232
Query: 95  YLSSLGNHSNLEFF----MLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQ 150
            L    N  NLE F    +  L N T+E     +L      ++ L NC  N +   L   
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292
Query: 151 HDLKSLDLSHN------KLV----GSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLD 200
              +  D S+N      +LV    G FP   L+      + RLT  S  G    S   L 
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK-----SLKRLTFTSNKGGNAFSEVDLP 347
Query: 201 FLHHLDISSN--SFTGRLPQ-NMSTILQKLVYLDMSKNKFEGSI--SSSISEMKDLRFLD 255
            L  LD+S N  SF G   Q +  T    L YLD+S   F G I  SS+   ++ L  LD
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTT--SLKYLDLS---FNGVITMSSNFLGLEQLEHLD 402
Query: 256 LSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRIS 315
              +         +     +L  LD+SH       +  F  L+ L  L +  N+F     
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 316 NGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEI 375
               +  R+L  LD+S  +L    P+   + SSL +L +S N          K L +L++
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522
Query: 376 LDVSENNL 383
           LD S N++
Sbjct: 523 LDYSLNHI 530

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 164/387 (42%), Gaps = 39/387 (10%)
Query: 19  GSLENQGICELKNLIELNLEGNAIEG-PLPQCLKNLTRLKVFGISSNQLSGSLPSVIASL 77
            SLEN  I  LK L ELN+  N I+   LP+   NLT L+   +SSN++     + +  L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172
Query: 78  TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNN--TLEVETENWLPTSQLKVLHL 135
             +  L+LS +           G    +    L+L NN  +L V        + L+V  L
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232
Query: 136 RNCNLNGTLGFLQKQHDLKSLDLSH-----NKLVGSFPAWLLQHNTKLEVLRLTN----- 185
                   LG  + + +L+  D S      N  +  F    L +    +++ L N     
Sbjct: 233 -------VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD-DIIDLFNCLTNV 284
Query: 186 NSFT-GSLQLSNSKLDFLH-----HLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEG 239
           +SF+  S+ +   K DF +     HL++ +  F G+ P   +  L+ L  L  + NK  G
Sbjct: 285 SSFSLVSVTIERVK-DFSYNFGWQHLELVNCKF-GQFP---TLKLKSLKRLTFTSNK--G 337
Query: 240 SISSSISEMKDLRFLDLSRN--QFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNL 297
             + S  ++  L FLDLSRN   F G  S     G  SL  LDLS N     +S  F+ L
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVI-TMSSNFLGL 395
Query: 298 TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN 357
            QL  L   ++N           S R+L  LDIS+              SSL +L ++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 358 LLEGN-IPVQLKNLEALEILDVSENNL 383
             + N +P     L  L  LD+S+  L
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQL 482

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 129/294 (43%), Gaps = 61/294 (20%)
Query: 26  ICELKNLIELN---LEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY 82
           I  LKNL  LN   L  N I       L  LT L+    SSNQ++   P  +A+LT+L+ 
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLER 177
Query: 83  LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVL-HLRNCNLN 141
           LD+S N    I  L+ L   +NLE  + +  NN +   T        L +L +L   +LN
Sbjct: 178 LDISSNKVSDISVLAKL---TNLESLIAT--NNQISDITP-------LGILTNLDELSLN 225
Query: 142 GT----LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNS 197
           G     +G L    +L  LDL++N++    P   L   TKL  L+L      G+ Q+SN 
Sbjct: 226 GNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKL------GANQISN- 275
Query: 198 KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLS 257
                    IS     G         L  L  L++++N+ E    S IS +K+L +L L 
Sbjct: 276 ---------ISP--LAG---------LTALTNLELNENQLEDI--SPISNLKNLTYLTLY 313
Query: 258 RNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFS 311
            N  S       LT    L+     +N+    VS    NLT + WLS  +N  S
Sbjct: 314 FNNISDISPVSSLTKLQRLFF----YNNKVSDVS-SLANLTNINWLSAGHNQIS 362

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 129/294 (43%), Gaps = 61/294 (20%)
Query: 26  ICELKNLIELN---LEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY 82
           I  LKNL  LN   L  N I       L  LT L+    SSNQ++   P  +A+LT+L+ 
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLER 177
Query: 83  LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVL-HLRNCNLN 141
           LD+S N    I  L+ L   +NLE  + +  NN +   T        L +L +L   +LN
Sbjct: 178 LDISSNKVSDISVLAKL---TNLESLIAT--NNQISDITP-------LGILTNLDELSLN 225
Query: 142 GT----LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNS 197
           G     +G L    +L  LDL++N++    P   L   TKL  L+L      G+ Q+SN 
Sbjct: 226 GNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKL------GANQISN- 275
Query: 198 KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLS 257
                    IS     G         L  L  L++++N+ E    S IS +K+L +L L 
Sbjct: 276 ---------ISP--LAG---------LTALTNLELNENQLEDI--SPISNLKNLTYLTLY 313
Query: 258 RNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFS 311
            N  S       LT    L+     +N+    VS    NLT + WLS  +N  S
Sbjct: 314 FNNISDISPVSSLTKLQRLFF----YNNKVSDVS-SLANLTNINWLSAGHNQIS 362

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 128/294 (43%), Gaps = 61/294 (20%)
Query: 26  ICELKNLIELN---LEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY 82
           I  LKNL  LN   L  N I       L  LT L+    SSNQ++   P  +A+LT+L+ 
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLER 177
Query: 83  LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVL-HLRNCNLN 141
           LD+S N    I  L+ L   +NLE  + +  NN +   T        L +L +L   +LN
Sbjct: 178 LDISSNKVSDISVLAKL---TNLESLIAT--NNQISDITP-------LGILTNLDELSLN 225
Query: 142 GT----LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNS 197
           G     +G L    +L  LDL++N++    P   L   TKL  L+L      G+ Q+SN 
Sbjct: 226 GNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKL------GANQISN- 275
Query: 198 KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLS 257
                    IS     G         L  L  L++++N+ E    S IS +K+L +L L 
Sbjct: 276 ---------ISP--LAG---------LTALTNLELNENQLEDI--SPISNLKNLTYLTLY 313
Query: 258 RNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFS 311
            N  S       LT    L+      N+    VS    NLT + WLS  +N  S
Sbjct: 314 FNNISDISPVSSLTKLQRLFF----SNNKVSDVS-SLANLTNINWLSAGHNQIS 362

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 129/317 (40%), Gaps = 34/317 (10%)
Query: 5   KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSN 64
           K+LK L+L+Y  IN  + ++    L NL  LNL  N +          L ++    +  N
Sbjct: 290 KDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 65  QLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENW 124
            ++         L  LQ LDL DN    I ++ S+ +        + L  N L       
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD--------IFLSGNKLVT----- 395
Query: 125 LPTSQLK--VLHLRNCNLN--GTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
           LP   L   ++HL    L     L FL +   L+ L L+ N+            N  LE 
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455
Query: 181 LRLTNN--SFTGSLQLSNSKLDFLHHLDI--SSNSFTGRLPQNMSTILQKLVYLDMSKNK 236
           L L  N        +L     + L HL +   ++++   LP  + + L  L  L ++ N+
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515
Query: 237 FEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF-CGQVSPKFM 295
              ++ S      +L  LD+SRNQ    L AP      SL +LD++HN F C      F+
Sbjct: 516 L--TVLSHNDLPANLEILDISRNQ----LLAPNPDVFVSLSVLDITHNKFICECELSTFI 569
Query: 296 NLTQLGWLSLDNNNFSG 312
           N     WL+  N   +G
Sbjct: 570 N-----WLNHTNVTIAG 581

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 125/311 (40%), Gaps = 42/311 (13%)
Query: 8   KALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLS 67
           + LDL    I  +L         +L EL L  N +    P    NL  L+  G+ SN+L 
Sbjct: 35  RLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 68  GSLPSVIASLTSLQYLDLSDN--------YFQGIFYLSSLGNHSNLEFFML--------S 111
                V   L++L  LD+S+N         FQ ++ L SL    N   ++         S
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153
Query: 112 LVNNTLEVETENWLPTSQLKVLH------LRNCNLNGTLGF-LQKQHDLKSLDLSHNKLV 164
           L   TLE      +PT  L  LH      LR+ N+N    +  ++ + LK L++SH   +
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213
Query: 165 GSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTIL 224
            +     L +   L  L +T+ + T    L+   L +L  L++S N  +  +  +M   L
Sbjct: 214 DTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-IEGSMLHEL 271
Query: 225 QKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFS----------GEL------SAP 268
            +L  + +   +       +   +  LR L++S NQ +          G L      S P
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331
Query: 269 LLTGCFSLWLL 279
           L   C  LW+ 
Sbjct: 332 LACDCRLLWVF 342

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 139/322 (43%), Gaps = 53/322 (16%)
Query: 25  GICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84
           G+  L NL ++N   N +    P  LKNLT+L    +++NQ++   P  +A+LT+L  L 
Sbjct: 63  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118
Query: 85  LSDNYFQGIFYLSSLGNHSNLEFF------------MLSLVNNTLEVETENWLPTSQLKV 132
           L +N    I  L +L N + LE              + SL   +   +  +  P + L  
Sbjct: 119 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT 178
Query: 133 LHLRNCNLNGT--LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSF-- 188
           L   + + N    +  L K  +L+SL  ++N++    P  +L   T L+ L L  N    
Sbjct: 179 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGNQLKD 235
Query: 189 TGSLQLSNSKLDFLHHLDISSNSFTGRLP-----------------QNMSTI--LQKLVY 229
            G+L    + L  L  LD+++N  +   P                  N+S +  L  L  
Sbjct: 236 IGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 291
Query: 230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289
           L++++N+ E    S IS +K+L +L L  N  S       LT    L+     +N+    
Sbjct: 292 LELNENQLEDI--SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----YNNKVSD 345
Query: 290 VSPKFMNLTQLGWLSLDNNNFS 311
           VS    NLT + WLS  +N  S
Sbjct: 346 VS-SLANLTNINWLSAGHNQIS 366

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 138/322 (42%), Gaps = 53/322 (16%)
Query: 25  GICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84
           G+  L NL ++N   N +    P  LKNLT+L    +++NQ++   P  +A+LT+L  L 
Sbjct: 58  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 113
Query: 85  LSDNYFQGIFYLSSLGNHSNLEFF------------MLSLVNNTLEVETENWLPTSQLKV 132
           L +N    I  L +L N + LE              + SL       +  +  P + L  
Sbjct: 114 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTT 173
Query: 133 LHLRNCNLNGT--LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFT- 189
           L   + + N    +  L K  +L+SL  ++N++    P  +L   T L+ L L  N    
Sbjct: 174 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGNQLKD 230
Query: 190 -GSLQLSNSKLDFLHHLDISSNSFTGRLP-----------------QNMSTI--LQKLVY 229
            G+L    + L  L  LD+++N  +   P                  N+S +  L  L  
Sbjct: 231 IGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 286
Query: 230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289
           L++++N+ E    S IS +K+L +L L  N  S       LT    L+     +N+    
Sbjct: 287 LELNENQLEDI--SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----YNNKVSD 340
Query: 290 VSPKFMNLTQLGWLSLDNNNFS 311
           VS    NLT + WLS  +N  S
Sbjct: 341 VS-SLANLTNINWLSAGHNQIS 361

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 25/159 (15%)
Query: 227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF 286
           L+ L+++KN      + + S +  LR LDL  N+   +LS     G  +++ + LS+N +
Sbjct: 383 LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY 442
Query: 287 CGQVSPKFMNLTQLGWLSLDNNNFSG-RISNGFLSSARSLQVLDISNNKLVGQIPSWIGN 345
               +  F  +  L  L L         IS       R+L +LD+SNN +          
Sbjct: 443 LQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIAN-------- 494
Query: 346 FSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
                   ++++LLEG        LE LEILD   NNL+
Sbjct: 495 --------INEDLLEG--------LENLEILDFQHNNLA 517

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 138/322 (42%), Gaps = 53/322 (16%)
Query: 25  GICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84
           G+  L NL ++N   N +    P  LKNLT+L    +++NQ++   P  +A+LT+L  L 
Sbjct: 62  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 117
Query: 85  LSDNYFQGIFYLSSLGNHSNLEFF------------MLSLVNNTLEVETENWLPTSQLKV 132
           L +N    I  L +L N + LE              + SL   +   +  +  P + L  
Sbjct: 118 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT 177
Query: 133 LHLRNCNLNGT--LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFT- 189
           L   + + N    +  L K  +L+SL  ++N++    P  +L   T L+ L L  N    
Sbjct: 178 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGNQLKD 234
Query: 190 -GSLQLSNSKLDFLHHLDISSNSFTGRLP-----------------QNMSTI--LQKLVY 229
            G+L    + L  L  LD+++N  +   P                  N+S +  L  L  
Sbjct: 235 IGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 290
Query: 230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289
           L++++N+ E    S IS +K+L +L L  N  S       LT    L+      N+    
Sbjct: 291 LELNENQLEDI--SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----ANNKVSD 344
Query: 290 VSPKFMNLTQLGWLSLDNNNFS 311
           VS    NLT + WLS  +N  S
Sbjct: 345 VS-SLANLTNINWLSAGHNQIS 365

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 137/322 (42%), Gaps = 53/322 (16%)
Query: 25  GICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84
           G+  L NL ++N   N +    P  LKNLT+L    +++NQ++   P  +A+LT+L  L 
Sbjct: 58  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 113
Query: 85  LSDNYFQGIFYLSSLGNHSNLEFF------------MLSLVNNTLEVETENWLPTSQLKV 132
           L +N    I  L +L N + LE              + SL       +  +  P + L  
Sbjct: 114 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTT 173
Query: 133 LHLRNCNLNGT--LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFT- 189
           L   + + N    +  L K  +L+SL  ++N++    P  +L   T L+ L L  N    
Sbjct: 174 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGNQLKD 230
Query: 190 -GSLQLSNSKLDFLHHLDISSNSFTGRLP-----------------QNMSTI--LQKLVY 229
            G+L    + L  L  LD+++N  +   P                  N+S +  L  L  
Sbjct: 231 IGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 286
Query: 230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289
           L++++N+ E    S IS +K+L +L L  N  S       LT    L+      N+    
Sbjct: 287 LELNENQLEDI--SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----SNNKVSD 340
Query: 290 VSPKFMNLTQLGWLSLDNNNFS 311
           VS    NLT + WLS  +N  S
Sbjct: 341 VS-SLANLTNINWLSAGHNQIS 361

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	384
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-81
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-79
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-68
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-67
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-64
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-58
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-50
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-47
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-37
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-42
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-36
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-35
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-33
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-30
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  263 bits (675), Expect = 2e-81
 Identities = 122/387 (31%), Positives = 184/387 (47%), Gaps = 16/387 (4%)

Query: 3   KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGIS 62
               LK L +S   I+G ++   +    NL  L++  N     +P  L + + L+   IS
Sbjct: 176 GCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 231

Query: 63  SNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETE 122
            N+LSG     I++ T L+ L++S N F G      L    +L++  L+   N    E  
Sbjct: 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLA--ENKFTGEIP 286

Query: 123 NWLPT--SQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLE 179
           ++L      L  L L   +  G +  F      L+SL LS N   G  P   L     L+
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346

Query: 180 VLRLTNNSFTGSLQLSNSKLDF-LHHLDISSNSFTGRLPQNM-STILQKLVYLDMSKNKF 237
           VL L+ N F+G L  S + L   L  LD+SSN+F+G +  N+       L  L +  N F
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406

Query: 238 EGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNL 297
            G I  ++S   +L  L LS N  SG +    L     L  L L  N   G++  + M +
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465

Query: 298 TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN 357
             L  L LD N+ +G I +G LS+  +L  + +SNN+L G+IP WIG   +LA+L +S N
Sbjct: 466 KTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524

Query: 358 LLEGNIPVQLKNLEALEILDVSENNLS 384
              GNIP +L +  +L  LD++ N  +
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFN 551

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  258 bits (662), Expect = 1e-79
 Identities = 126/391 (32%), Positives = 182/391 (46%), Gaps = 15/391 (3%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLP--QCLKNLTRLKV 58
           L     L++L LS + INGS+   G     +L  L+L  N++ GP+     L + + LK 
Sbjct: 73  LLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 130

Query: 59  FGISSNQLSGSLP-SVIASLTSLQYLDLSDNYFQGIF--YLSSLGNHSNLEFFMLSLVNN 115
             +SSN L      S    L SL+ LDLS N   G              L+   L++  N
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH--LAISGN 188

Query: 116 TLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHN 175
            +  + +     + L+ L + + N +  + FL     L+ LD+S NKL G F    +   
Sbjct: 189 KISGDVDVSRCVN-LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTC 246

Query: 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
           T+L++L +++N F G +      L  L +L ++ N FTG +P  +S     L  LD+S N
Sbjct: 247 TELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

Query: 236 KFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFM 295
            F G++         L  L LS N FSGEL    L     L +LDLS N F G++     
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364

Query: 296 NLT-QLGWLSLDNNNFSGRISNGFL-SSARSLQVLDISNNKLVGQIPSWIGNFSSLALLT 353
           NL+  L  L L +NNFSG I      +   +LQ L + NN   G+IP  + N S L  L 
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424

Query: 354 VSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
           +S N L G IP  L +L  L  L +  N L 
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  227 bits (580), Expect = 9e-68
 Identities = 113/370 (30%), Positives = 177/370 (47%), Gaps = 21/370 (5%)

Query: 27  CELKNLIELNLEGNAIE---GPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYL 83
           C    +  ++L    +      +   L +LT L+   +S++ ++GS+        SL  L
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSL 105

Query: 84  DLSDNYFQG-IFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG 142
           DLS N   G +  L+SLG+ S L+F  +S        +    L  + L+VL L   +++G
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 143 T----LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSL-QLSNS 197
                        +LK L +S NK+ G            LE L +++N+F+  +  L + 
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC---VNLEFLDVSSNNFSTGIPFLGD- 221

Query: 198 KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLS 257
               L HLDIS N  +G   + +ST   +L  L++S N+F G I      +K L++L L+
Sbjct: 222 -CSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPLP--LKSLQYLSLA 277

Query: 258 RNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNG 317
            N+F+GE+   L   C +L  LDLS N F G V P F + + L  L+L +NNFSG +   
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337

Query: 318 FLSSARSLQVLDISNNKLVGQIPSWIGNFS-SLALLTVSKNLLEGNIPVQLKN--LEALE 374
            L   R L+VLD+S N+  G++P  + N S SL  L +S N   G I   L       L+
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397

Query: 375 ILDVSENNLS 384
            L +  N  +
Sbjct: 398 ELYLQNNGFT 407

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  225 bits (575), Expect = 5e-67
 Identities = 110/391 (28%), Positives = 179/391 (45%), Gaps = 18/391 (4%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLT-RLKVF 59
                 L++L LS    +G L    + +++ L  L+L  N   G LP+ L NL+  L   
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373

Query: 60  GISSNQLSGSLPSVI--ASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL 117
            +SSN  SG +   +      +LQ L L +N F G     +L N S L    L L  N L
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI-PPTLSNCSELVS--LHLSFNYL 430

Query: 118 EVETENWLPT-SQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHN 175
                + L + S+L+ L L    L G +   L     L++L L  N L G  P+ L  + 
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SNC 489

Query: 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
           T L  + L+NN  TG +     +L+ L  L +S+NSF+G +P  +    + L++LD++ N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTN 548

Query: 236 KFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHN--SFCGQVSPK 293
            F G+I +++ +        ++ N  +G+    +            + N   F G  S +
Sbjct: 549 LFNGTIPAAMFKQS----GKIAANFIAGKRYVYI-KNDGMKKECHGAGNLLEFQGIRSEQ 603

Query: 294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLT 353
              L+     ++ +  + G  S     +  S+  LD+S N L G IP  IG+   L +L 
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSP-TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662

Query: 354 VSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
           +  N + G+IP ++ +L  L ILD+S N L 
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  216 bits (552), Expect = 9e-64
 Identities = 112/394 (28%), Positives = 175/394 (44%), Gaps = 25/394 (6%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKN--LTRLKV 58
           L K + LK LDLS+   +G L         +L+ L+L  N   GP+   L       L+ 
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398

Query: 59  FGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLE 118
             + +N  +G +P  +++ + L  L LS NY  G    SSLG+ S L    L    N LE
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-PSSLGSLSKLRDLKLW--LNMLE 455

Query: 119 VETENWLPTS-----QLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLL 172
            E    +P        L+ L L   +L G +   L    +L  + LS+N+L G  P W+ 
Sbjct: 456 GE----IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI- 510

Query: 173 QHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDM 232
                L +L+L+NNSF+G++         L  LD+++N F G +P  M           +
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS-----GKI 565

Query: 233 SKNKFEGSISSSISEMKDLRFLDLSRN--QFSGELSAPLLTGCFSLWLLDLSHNSFCGQV 290
           + N   G     I      +    + N  +F G  S   L    +    +++   + G  
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS-EQLNRLSTRNPCNITSRVYGGHT 624

Query: 291 SPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLA 350
           SP F N   + +L +  N  SG I    + S   L +L++ +N + G IP  +G+   L 
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKE-IGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683

Query: 351 LLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
           +L +S N L+G IP  +  L  L  +D+S NNLS
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  202 bits (516), Expect = 1e-58
 Identities = 102/392 (26%), Positives = 164/392 (41%), Gaps = 54/392 (13%)

Query: 6   NLKALDLSYTGINGSL-ENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSN 64
           +L  LDLS    +G +  N        L EL L+ N   G +P  L N + L    +S N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428

Query: 65  QLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENW 124
            LSG++PS + SL+ L+ L L  N  +G      L     LE                  
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEI-PQELMYVKTLET----------------- 470

Query: 125 LPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRL 183
                   L L   +L G +   L    +L  + LS+N+L G  P W+      L +L+L
Sbjct: 471 --------LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKL 521

Query: 184 TNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKL---------------- 227
           +NNSF+G++         L  LD+++N F G +P  M     K+                
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581

Query: 228 -----VYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLS 282
                 +   +  +F+G  S  ++ +      +++   + G  S P      S+  LD+S
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS-PTFDNNGSMMFLDMS 640

Query: 283 HNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSW 342
           +N   G +  +  ++  L  L+L +N+ SG I +      R L +LD+S+NKL G+IP  
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-GDLRGLNILDLSSNKLDGRIPQA 699

Query: 343 IGNFSSLALLTVSKNLLEGNIPV--QLKNLEA 372
           +   + L  + +S N L G IP   Q +    
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 731

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  142 bits (360), Expect = 2e-37
 Identities = 59/290 (20%), Positives = 117/290 (40%), Gaps = 31/290 (10%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L   K L+ L L +  + G +   G+    NL  ++L  N + G +P+ +  L  L +  
Sbjct: 462 LMYVKTLETLILDFNDLTGEIP-SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           +S+N  SG++P+ +    SL +LDL+ N F G    +++   S        +  N +  +
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI-PAAMFKQSGK------IAANFIAGK 573

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
              ++    +                            +  +  G     L    +    
Sbjct: 574 RYVYIKNDGM--------------------KKECHGAGNLLEFQGIRSEQLN-RLSTRNP 612

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGS 240
             +T+  + G    +      +  LD+S N  +G +P+ + + +  L  L++  N   GS
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGS 671

Query: 241 ISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQV 290
           I   + +++ L  LDLS N+  G +    ++    L  +DLS+N+  G +
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRI-PQAMSALTMLTEIDLSNNNLSGPI 720

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  179 bits (457), Expect = 8e-51
 Identities = 81/408 (19%), Positives = 147/408 (36%), Gaps = 25/408 (6%)

Query: 1   LAKFKNLKALDLSYTGINGSL--ENQGICELKNLIELNLEGNAIEGPLPQCLKNL--TRL 56
                 L  L L+   +  SL  +        ++  L+L  + +          L  T L
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250

Query: 57  KVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLE-------FFM 109
            +  +S N L+       A L  L+Y  L  N  Q +F   SL    N+        F  
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRSFTK 309

Query: 110 LSLVNNTLEVETENWL-PTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKL-VGS 166
            S+   +L    +        L+ L++ + ++ G          +LK L LS++   + +
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 167 FPAWLLQH--NTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTIL 224
                     ++ L +L LT N  +     + S L  L  LD+  N     L       L
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429

Query: 225 QKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSG-ELSAPLLTGCFSLWLLDLSH 283
           + +  + +S NK+     +S + +  L+ L L R      + S        +L +LDLS+
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 284 NSFCGQVSPKFMNLTQLGWLSLDNNNFS-------GRISNGFLSSARSLQVLDISNNKLV 336
           N+           L +L  L L +NN +             FL     L +L++ +N   
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 337 GQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
                   +   L ++ +  N L         N  +L+ L++ +N ++
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  178 bits (453), Expect = 3e-50
 Identities = 92/402 (22%), Positives = 158/402 (39%), Gaps = 21/402 (5%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
             ++  L +LD+ +  I+  LE +   +L  L  LNL+ N +     +     T L    
Sbjct: 45  FTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVN-NTLEV 119
           + SN +     +      +L  LDLS N       L +     NL+  +LS      L+ 
Sbjct: 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKIQALKS 162

Query: 120 ETENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQ--HNT 176
           E  +    S LK L L +  +     G       L  L L++ +L  S    L     NT
Sbjct: 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222

Query: 177 KLEVLRLTNNSFTGSLQLSNSKLDF--LHHLDISSNSFTGRLPQNMSTILQKLVYLDMSK 234
            +  L L+N+  + +   +   L +  L  LD+S N+       + +  L +L Y  +  
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEY 281

Query: 235 NKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLT--------GCFSLWLLDLSHNSF 286
           N  +   S S+  + ++R+L+L R+     +S   L             L  L++  N  
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341

Query: 287 CGQVSPKFMNLTQLGWLSLDNNNFSGR-ISNGFLSS--ARSLQVLDISNNKLVGQIPSWI 343
            G  S  F  L  L +LSL N+  S R ++N    S     L +L+++ NK+        
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401

Query: 344 GNFSSLALLTVSKNLLEGNIPVQ-LKNLEALEILDVSENNLS 384
                L +L +  N +   +  Q  + LE +  + +S N   
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  169 bits (429), Expect = 6e-47
 Identities = 88/398 (22%), Positives = 139/398 (34%), Gaps = 37/398 (9%)

Query: 3   KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKV---- 58
           K+ NL  LDLSY  +N  + N     L  L    LE N I+      L  L  ++     
Sbjct: 246 KWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 59  -----FGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLS-- 111
                  IS   L          L  L++L++ DN   GI   +      NL++  LS  
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK-SNMFTGLINLKYLSLSNS 363

Query: 112 -LVNNTLEVETENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPA 169
                TL  ET   L  S L +L+L    ++            L+ LDL  N++      
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 170 WLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI--LQKL 227
              +    +  + L+ N +    + S + +  L  L +   +    +  + S    L+ L
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN-VDSSPSPFQPLRNL 482

Query: 228 VYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFC 287
             LD+S N         +  ++ L  LDL  N  +                  L  ++  
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA-----------------RLWKHANP 525

Query: 288 GQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFS 347
           G        L+ L  L+L++N F   I          L+++D+  N L     S   N  
Sbjct: 526 GGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584

Query: 348 SLALLTVSKNLLEGNIPVQL-KNLEALEILDVSENNLS 384
           SL  L + KNL+              L  LD+  N   
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  123 bits (310), Expect = 7e-31
 Identities = 61/343 (17%), Positives = 120/343 (34%), Gaps = 40/343 (11%)

Query: 78  TSLQYLDLSDNYFQGI--------------------FYLSSLGNHSNLEFFMLSLVNNTL 117
            S +  D S      +                       ++   +S L    L +  NT+
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTS--LDVGFNTI 61

Query: 118 E-VETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHN 175
             +E E       LKVL+L++  L+  +        +L  L L  N +            
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN-PFVKQ 120

Query: 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI-LQKLVYLDMSK 234
             L  L L++N  + +   +  +L+ L  L +S+N       + +       L  L++S 
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 235 NKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCF--SLWLLDLSHNSFCGQVSP 292
           N+ +         +  L  L L+  Q    L+  L       S+  L LS++      + 
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 293 KFMNL--TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLA 350
            F+ L  T L  L L  NN +  + N   +    L+   +  N +       +    ++ 
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299

Query: 351 LLTVSKNLLEGNI---------PVQLKNLEALEILDVSENNLS 384
            L + ++  + +I             + L+ LE L++ +N++ 
Sbjct: 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 36/172 (20%), Positives = 60/172 (34%), Gaps = 16/172 (9%)

Query: 1   LAKFKNLKALDLSY-------TGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNL 53
           L   + L+ LDL +          N       +  L +L  LNLE N  +    +  K+L
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559

Query: 54  TRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLV 113
             LK+  +  N L+    SV  +  SL+ L+L  N    +          NL    +   
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR-- 617

Query: 114 NNTLEVETEN------WLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLS 159
            N  +   E+      W+  +   +  L +  L  T         ++  D S
Sbjct: 618 FNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGF-PVRLFDTS 668

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  169 bits (430), Expect = 2e-47
 Identities = 87/417 (20%), Positives = 149/417 (35%), Gaps = 38/417 (9%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           +   K LK L++++  I      +    L NL  L+L  N I+      L+ L ++ +  
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 61  I----SSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNT 116
           +    S N ++   P     +  L  L L +N+       + +   + LE   L L    
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 117 LEVETENW-------LPTSQLKVLHLRNCNL--NGTLGFLQKQHDLKSLDLSHNKLVGSF 167
            E   E +       L    ++   L   +   +  +       ++ S  L    +    
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 168 PAWLLQHNTKLEVLRLTNNSFT-------------------GSLQLSNSKLDFLHHLDIS 208
                 +N   + L L N  F                    G    S   L  L  LD+S
Sbjct: 299 D---FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 355

Query: 209 SNSFTGRLPQNMS-TILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSA 267
            N  + +   + S      L YLD+S N     +SS+   ++ L  LD   +        
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 268 PLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQV 327
            +     +L  LD+SH       +  F  L+ L  L +  N+F         +  R+L  
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 328 LDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
           LD+S  +L    P+   + SSL +L +S N          K L +L++LD S N++ 
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  158 bits (401), Expect = 2e-43
 Identities = 95/400 (23%), Positives = 143/400 (35%), Gaps = 28/400 (7%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEG-PLPQCLKNLTRLKVF 59
            +   +L+ L    T +   LEN  I  LK L ELN+  N I+   LP+   NLT L+  
Sbjct: 96  FSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 60  GISSNQLSGSLPSVIASLTSLQY----LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNN 115
            +SSN++     + +  L  +      LDLS N    I           L    L    +
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI--QPGAFKEIRLHKLTLRNNFD 212

Query: 116 TLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQ---------KQHDLKSLDLSHNKLVGS 166
           +L V        + L+V  L            +             ++   L++      
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 167 FPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK 226
               L    T +    L + +       S        HL++ +  F    P      L++
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQ-FPTLKLKSLKR 329

Query: 227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSG-ELSAPLLTGCFSLWLLDLSHNS 285
           L +         G  + S  ++  L FLDLSRN  S     +    G  SL  LDLS N 
Sbjct: 330 LTFTSNK-----GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 286 FCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGN 345
               +S  F+ L QL  L   ++N           S R+L  LDIS+             
Sbjct: 385 V-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 346 FSSLALLTVSKNLLEGNI-PVQLKNLEALEILDVSENNLS 384
            SSL +L ++ N  + N  P     L  L  LD+S+  L 
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  151 bits (383), Expect = 6e-41
 Identities = 87/419 (20%), Positives = 157/419 (37%), Gaps = 42/419 (10%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNL----IELNLEGNAIEGPLPQCLKNLTRL 56
            +   NL+ LDLS   I   +    +  L  +    + L+L  N +    P   K + RL
Sbjct: 145 FSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202

Query: 57  KVFGISSNQLSGSLPS-VIASLTSLQYLDLSDNYFQGIFYLSSLGNHS-------NLEFF 108
               + +N  S ++    I  L  L+   L    F+    L      +        +E F
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 109 MLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFP 168
            L+ ++  L+   + +   + +    L +  +     F       + L+L + K      
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF-SYNFGWQHLELVNCKFGQFPT 321

Query: 169 AWL------------------LQHNTKLEVLRLTNN--SFTGSLQLSNSKLDFLHHLDIS 208
             L                        LE L L+ N  SF G    S+     L +LD+S
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 209 SNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSI-SEMKDLRFLDLSRNQFSGELSA 267
            N         +   L++L +LD   +  +     S+   +++L +LD+S          
Sbjct: 382 FNGVITMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFN 438

Query: 268 PLLTGCFSLWLLDLSHNSFCGQVSPK-FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQ 326
            +  G  SL +L ++ NSF     P  F  L  L +L L        +S    +S  SLQ
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQ 497

Query: 327 VLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLE-ALEILDVSENNLS 384
           VL++S+N             +SL +L  S N +  +   +L++   +L  L++++N+ +
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  141 bits (357), Expect = 3e-37
 Identities = 72/413 (17%), Positives = 135/413 (32%), Gaps = 37/413 (8%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
             + K LDLS+  +   L +        L  L+L    I+       ++L+ L    ++ 
Sbjct: 27  PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 64  NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETEN 123
           N +        + L+SLQ L   +     +     +G+   L+   ++          E 
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 124 WLPTSQLKVLHLRNCNLNG----TLGFLQK-QHDLKSLDLSHNKLVGSFPAWLLQHNTKL 178
           +   + L+ L L +  +       L  L +      SLDLS N +    P        +L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRL 202

Query: 179 EVLRLTNNSFTGSL-QLSNSKLDFLHHLDISSNSFTG--RLPQNMSTILQKLVYLDMSKN 235
             L L NN  + ++ +     L  L    +    F     L +   + L+ L  L + + 
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 236 K------FEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289
           +      +   I    + + ++    L               G   L L++     F   
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL 322

Query: 290 V----------------SPKFMNLTQLGWLSLDNNNFSGR-ISNGFLSSARSLQVLDISN 332
                            +   ++L  L +L L  N  S +   +       SL+ LD+S 
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 333 NKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQ-LKNLEALEILDVSENNLS 384
           N ++  + S       L  L    + L+         +L  L  LD+S  +  
Sbjct: 383 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  135 bits (341), Expect = 4e-35
 Identities = 75/396 (18%), Positives = 126/396 (31%), Gaps = 35/396 (8%)

Query: 6   NLKALDLSYTGINGSLENQGICELKNLIELNLEGNA------IEGPLPQCLKNLTRLKVF 59
            L  L L     + ++    I  L  L    L          +E      L+ L  L + 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 60  GISSNQLSGS---LPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSL---- 112
                 L      +  +   LT++    L     + +   S      +LE          
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 113 -----------VNNTLEVETENWLPTSQLKVLHLRNCNLNG---TLGFLQKQHDLKSLDL 158
                        +       + +    L+ L L    L+              LK LDL
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 159 SHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSN-SKLDFLHHLDISSNSFTGRLP 217
           S N ++     +L     +LE L   +++     + S    L  L +LDIS         
Sbjct: 381 SFNGVITMSSNFL--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AF 437

Query: 218 QNMSTILQKLVYLDMSKNKFEGSI-SSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSL 276
             +   L  L  L M+ N F+ +      +E+++L FLDLS+ Q    LS        SL
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSL 496

Query: 277 WLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV 336
            +L++SHN+F    +  +  L  L  L    N+              SL  L+++ N   
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

Query: 337 GQIPS--WIGNFSSLALLTVSKNLLEGNIPVQLKNL 370
                  ++        L V    +E   P   + +
Sbjct: 557 CTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 592

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 11/184 (5%)

Query: 206 DISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGEL 265
                +F  ++P N   +      LD+S N      S S     +L+ LDLSR +    +
Sbjct: 13  QCMELNFY-KIPDN---LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-I 67

Query: 266 SAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSL 325
                     L  L L+ N         F  L+ L  L     N +  + N  +   ++L
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTL 126

Query: 326 QVLDISNNKLVG-QIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEI----LDVSE 380
           + L++++N +   ++P +  N ++L  L +S N ++      L+ L  + +    LD+S 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 381 NNLS 384
           N ++
Sbjct: 187 NPMN 190

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  166 bits (423), Expect = 2e-46
 Identities = 61/405 (15%), Positives = 121/405 (29%), Gaps = 48/405 (11%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           + +   L+   +  +          ICE       N E             NL  L    
Sbjct: 202 VMRLTKLRQFYMGNSPFVAE----NICEAWEN--ENSEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFY-------LSSLGNHSNLEFFMLSLV 113
           + +      LP+ + +L  +Q ++++ N              L+       ++   +   
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY- 314

Query: 114 NNTLEVETENWLPT-SQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLL 172
           NN      E  L    +L +L      L G L     +  L SL+L++N++    PA   
Sbjct: 315 NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE-IPANFC 373

Query: 173 QHNTKLEVLRLTNNSFTG-SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI------LQ 225
               ++E L   +N             +  +  +D S N       +N   +        
Sbjct: 374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433

Query: 226 KLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNS 285
            +  +++S N+         S    L  ++L  N  +                      +
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI------------------PKN 475

Query: 286 FCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGN 345
                +  F N   L  + L  N  +    +   ++   L  +D+S N      P+   N
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN 534

Query: 346 FSSLALLTVSKNL------LEGNIPVQLKNLEALEILDVSENNLS 384
            S+L    +               P  +    +L  L +  N++ 
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  154 bits (392), Expect = 5e-42
 Identities = 56/398 (14%), Positives = 126/398 (31%), Gaps = 47/398 (11%)

Query: 28  ELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSG----SLPSVIASLTSLQYL 83
               +  L+LEG    G +P  +  LT L+V  + S+          P  I++  S +  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 84  DLSDNYFQG-IFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG 142
                ++Q          + S+L    ++       ++  + +       +   + N+  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK-DTQIGQLSNNITF 197

Query: 143 ---TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHN------------------TKLEVL 181
               +  L K   L+   + ++  V        ++                     L  +
Sbjct: 198 VSKAVMRLTK---LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254

Query: 182 RLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMS-------TILQKLVYLDMSK 234
            + N      L      L  +  ++++ N                   + +K+  + +  
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314

Query: 235 NKF-EGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK 293
           N      + +S+ +MK L  L+   NQ  G+L  P       L  L+L++N      +  
Sbjct: 315 NNLKTFPVETSLQKMKKLGMLECLYNQLEGKL--PAFGSEIKLASLNLAYNQITEIPANF 372

Query: 294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVG-------QIPSWIGNF 346
                Q+  LS  +N      +     S   +  +D S N++          +       
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 347 SSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
            +++ + +S N +             L  +++  N L+
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  144 bits (366), Expect = 2e-38
 Identities = 61/411 (14%), Positives = 134/411 (32%), Gaps = 40/411 (9%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
            +  +  +  Y     +  +     LK+L ++ +        LP  LK L  +++  ++ 
Sbjct: 224 CEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282

Query: 64  NQL--------SGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNN 115
           N+              +       +Q + +  N  +     +SL     L         N
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL--YN 340

Query: 116 TLEVETENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQH 174
            LE +   +    +L  L+L    +      F      +++L  +HNKL    P      
Sbjct: 341 QLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAK 399

Query: 175 N-TKLEVLRLTNNSFTG-------SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK 226
           + + +  +  + N            L  +  K   +  +++S+N  +   P+ + +    
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSP 458

Query: 227 LVYLDMSKNKFEG-------SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLL 279
           L  +++  N             + +      L  +DL  N+ +        T    L  +
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGI 518

Query: 280 DLSHNSFCGQVSPKFMNLTQLGWLSLDN------NNFSGRISNGFLSSARSLQVLDISNN 333
           DLS+NSF  +   + +N + L    + N      N        G  +   SL  L I +N
Sbjct: 519 DLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI-TLCPSLTQLQIGSN 576

Query: 334 KLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
            +   +   I    ++++L +  N         +       +  +  +   
Sbjct: 577 DIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  140 bits (356), Expect = 4e-37
 Identities = 54/364 (14%), Positives = 112/364 (30%), Gaps = 50/364 (13%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
               + ++ + + Y  +        + ++K L  L    N +EG LP    +  +L    
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           ++ NQ++    +       ++ L  + N  + I  +    + S +     S   N +   
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFS--YNEIGSV 417

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
                           N               + S++LS+N++   FP  L    + L  
Sbjct: 418 DGKNFDPLDPTPFKGIN---------------VSSINLSNNQISK-FPKELFSTGSPLSS 461

Query: 181 LRLTNNSFTG-------SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMS 233
           + L  N  T            +      L  +D+  N  T       +T L  LV +D+S
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS 521

Query: 234 KNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK 293
            N F     +       L+   +                       D   N    +    
Sbjct: 522 YNSFSK-FPTQPLNSSTLKGFGIRNQ-------------------RDAQGNRTLREWPEG 561

Query: 294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLT 353
                 L  L + +N+    ++     +   + VLDI +N  +    S++  +    +  
Sbjct: 562 ITLCPSLTQLQIGSNDIRK-VNEKITPN---ISVLDIKDNPNISIDLSYVCPYIEAGMYM 617

Query: 354 VSKN 357
           +  +
Sbjct: 618 LFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  140 bits (354), Expect = 7e-37
 Identities = 44/349 (12%), Positives = 111/349 (31%), Gaps = 24/349 (6%)

Query: 50  LKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEF-F 108
           L +  R+    +     SG +P  I  LT L+ L L  +  +    L      S      
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 109 MLSLVNNTLEVETENWLP---TSQLKVLHLRNCNLNGTLGFLQKQH-DLKSLDLSHNKLV 164
               +    +    ++ P    S L    + +     ++    +       +    N + 
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI- 195

Query: 165 GSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTIL 224
                 +++  TKL    + N+ F         +       +                 L
Sbjct: 196 TFVSKAVMR-LTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDN-L 248

Query: 225 QKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPL-------LTGCFSLW 277
           + L  +++        + + +  + +++ ++++ N+                      + 
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 278 LLDLSHNSFC-GQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV 336
           ++ + +N+     V      + +LG L    N   G++      S   L  L+++ N++ 
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQIT 366

Query: 337 GQIPSWIGNFSSLALLTVSKNLLEGN-IPVQLKNLEALEILDVSENNLS 384
               ++ G    +  L+ + N L+        K++  +  +D S N + 
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 4/93 (4%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L  F      D            +GI    +L +L +  N I     +   N++ L    
Sbjct: 538 LKGFGIRNQRDAQGNRTLREW-PEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLD--- 593

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGI 93
           I  N       S +          L  +  Q I
Sbjct: 594 IKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDI 626

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  159 bits (404), Expect = 4e-46
 Identities = 74/323 (22%), Positives = 123/323 (38%), Gaps = 56/323 (17%)

Query: 62  SSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLS-SLGNHSNLEFFMLSLVNNTLEVE 120
            +    G L         +  LDLS       + +  SL N   L F  +          
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG--------- 84

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
                                                   N LVG  P   +   T+L  
Sbjct: 85  --------------------------------------GINNLVGPIPPA-IAKLTQLHY 105

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGS 240
           L +T+ + +G++    S++  L  LD S N+ +G LP ++S+ L  LV +    N+  G+
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGA 164

Query: 241 ISSSISEMKDL-RFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQ 299
           I  S      L   + +SRN+ +G++  P      +L  +DLS N   G  S  F +   
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKI--PPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 300 LGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLL 359
              + L  N+ +  +    +  +++L  LD+ NN++ G +P  +     L  L VS N L
Sbjct: 223 TQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 360 EGNIPVQLKNLEALEILDVSENN 382
            G IP Q  NL+  ++   + N 
Sbjct: 281 CGEIP-QGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  156 bits (396), Expect = 7e-45
 Identities = 65/307 (21%), Positives = 113/307 (36%), Gaps = 56/307 (18%)

Query: 5   KNLKALDLSYTGINGSLE-NQGICELKNLIELNLEG-NAIEGPLPQCLKNLTRLKVFGIS 62
             +  LDLS   +         +  L  L  L + G N + GP+P  +  LT+L    I+
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 63  SNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETE 122
              +SG++P  ++ + +L  LD S N   G                              
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGT----------------------------- 140

Query: 123 NWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLR 182
             LP S               +  L     L  +    N++ G+ P      +     + 
Sbjct: 141 --LPPS---------------ISSLPN---LVGITFDGNRISGAIPDSYGSFSKLFTSMT 180

Query: 183 LTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSIS 242
           ++ N  TG +  + + L+ L  +D+S N   G       +  +    + ++KN     + 
Sbjct: 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDL- 237

Query: 243 SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGW 302
             +   K+L  LDL  N+  G L    LT    L  L++S N+ CG++ P+  NL +   
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDV 295

Query: 303 LSLDNNN 309
            +  NN 
Sbjct: 296 SAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  148 bits (377), Expect = 5e-42
 Identities = 66/234 (28%), Positives = 110/234 (47%), Gaps = 6/234 (2%)

Query: 153 LKSLDLSHNKLVGSFPAWL-LQHNTKLEVLRLTN-NSFTGSLQLSNSKLDFLHHLDISSN 210
           + +LDLS   L   +P    L +   L  L +   N+  G +  + +KL  LH+L I+  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 211 SFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLL 270
           + +G +P  +S  ++ LV LD S N   G++  SIS + +L  +    N+ SG +     
Sbjct: 112 NVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 271 TGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDI 330
           +       + +S N   G++ P F NL  L ++ L  N   G  S  F  S ++ Q + +
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF-GSDKNTQKIHL 228

Query: 331 SNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
           + N L   +   +G   +L  L +  N + G +P  L  L+ L  L+VS NNL 
Sbjct: 229 AKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  132 bits (335), Expect = 4e-36
 Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 31/233 (13%)

Query: 155 SLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNS--KLDFLHHLDISS-NS 211
           + D  +   +G           ++  L L+  +      + +S   L +L+ L I   N+
Sbjct: 30  TTDCCNRTWLGVLCDTD-TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 212 FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLT 271
             G +P  ++  L +L YL ++     G+I   +S++K L  LD S N  SG L  P   
Sbjct: 89  LVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL--P--- 142

Query: 272 GCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDIS 331
                               P   +L  L  ++ D N  SG I + + S ++    + IS
Sbjct: 143 --------------------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182

Query: 332 NNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
            N+L G+IP    N  +LA + +S+N+LEG+  V   + +  + + +++N+L+
Sbjct: 183 RNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  162 bits (412), Expect = 7e-45
 Identities = 81/395 (20%), Positives = 143/395 (36%), Gaps = 17/395 (4%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L+  K LK L    TGI+ S++   +   K L  L L  N I            +LKV  
Sbjct: 101 LSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 61  ISSNQLSGSLPSVIASLTSLQ--YLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLE 118
             +N +       ++SL       L+L+ N   GI       + +  +        N L 
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE--PGAFDSAVFQSLNFGGTQNLLV 217

Query: 119 VETEN-WLPTSQLKVLHLRNCNLNGTLGFL---QKQHDLKSLDLSHNKLVGSFPAWLLQH 174
           +           L +    + +       +     +  ++S++L  +    +  +     
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NISSNTFHC 276

Query: 175 NTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSK 234
            + L+ L LT    +  L      L  L  L +S+N F   L Q  ++    L +L +  
Sbjct: 277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKG 334

Query: 235 NKFEGSI-SSSISEMKDLRFLDLSRNQFSG-ELSAPLLTGCFSLWLLDLSHNSFCGQVSP 292
           N     + +  +  +++LR LDLS +     +     L     L  L+LS+N      + 
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394

Query: 293 KFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALL 352
            F    QL  L L       + +     +   L+VL++S++ L            +L  L
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454

Query: 353 TVSKNLLEGNIPVQ---LKNLEALEILDVSENNLS 384
            +  N        +   L+ L  LEIL +S  +LS
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  155 bits (395), Expect = 2e-42
 Identities = 86/389 (22%), Positives = 147/389 (37%), Gaps = 15/389 (3%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
             + + L+ S+  +  +++N     L NL  L+L    I        ++  RL    +++
Sbjct: 32  PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 64  NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETEN 123
           N L     + ++   +L++L         I +   L N   LE   L L +N +      
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGISSIDF-IPLHNQKTLES--LYLGSNHISSIKLP 147

Query: 124 WL-PTSQLKVLHLRNCNLN----GTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKL 178
              PT +LKVL  +N  ++      +  LQ+  +L SL+L+ N + G  P        + 
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL-SLNLNGNDIAGIEPGAFDSAVFQS 206

Query: 179 EVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQ-KLVYLDMSKNKF 237
                T N       L NS +  L              P     + +  +  +++ K+ F
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 238 EGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNL 297
               S++      L+ LDL+    S   S   L G  +L  L LS N F         N 
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSELPSG--LVGLSTLKKLVLSANKFENLCQISASNF 324

Query: 298 TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL--VGQIPSWIGNFSSLALLTVS 355
             L  LS+  N     +  G L +  +L+ LD+S++ +         + N S L  L +S
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 356 KNLLEGNIPVQLKNLEALEILDVSENNLS 384
            N          K    LE+LD++   L 
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLK 413

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  149 bits (379), Expect = 3e-40
 Identities = 78/395 (19%), Positives = 141/395 (35%), Gaps = 18/395 (4%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKN--LTRLKV 58
           ++  +    L L+  G + +    G  +      LN  G      + + LKN  +  L +
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232

Query: 59  FGISSNQLSGSLPSVIASL--TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNT 116
                       P+V   L   S++ ++L  +YF  I   ++    S L+   L L    
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS-NTFHCFSGLQ--ELDLTATH 289

Query: 117 LEVETENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHN 175
           L       +  S LK L L                  L  L +  N          L++ 
Sbjct: 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349

Query: 176 TKLEVLRLTNNSFTGSLQLSNS--KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMS 233
             L  L L+++    S   +     L  L  L++S N     L         +L  LD++
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLA 408

Query: 234 KNKFEGSIS-SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCG---Q 289
             + +   + S    +  L+ L+LS +      S  L  G  +L  L+L  N F     Q
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

Query: 290 VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSL 349
            +     L +L  L L   + S  I     +S + +  +D+S+N+L       + +   +
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526

Query: 350 ALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
             L ++ N +   +P  L  L     +++ +N L 
Sbjct: 527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  148 bits (375), Expect = 7e-40
 Identities = 79/393 (20%), Positives = 141/393 (35%), Gaps = 14/393 (3%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNL--IELNLEGNAIEGPLPQCLKNLTRLKV 58
               + LK LD     I+  L  + +  L+    + LNL GN I G +     +    + 
Sbjct: 149 GFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQS 206

Query: 59  FGISSNQLSGSLPSVIA--SLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNT 116
                 Q    +   +   ++ SL      D   + I   +       +    ++L  + 
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP-AVFEGLCEMSVESINLQKHY 265

Query: 117 LEVETENWL-PTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHN 175
               + N     S L+ L L   +L+     L     LK L LS NK   +       + 
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF-ENLCQISASNF 324

Query: 176 TKLEVLRLTNNSFTGSLQLSN-SKLDFLHHLDISSNSFTGRLPQNMS-TILQKLVYLDMS 233
             L  L +  N+    L       L+ L  LD+S +        N+    L  L  L++S
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 234 KNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK 293
            N+     + +  E   L  LDL+  +   + +         L +L+LSH+         
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444

Query: 294 FMNLTQLGWLSLDNNNFSG--RISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLAL 351
           F  L  L  L+L  N+F          L +   L++L +S   L         +   +  
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504

Query: 352 LTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
           + +S N L  +    L +L+ +  L+++ N++S
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  146 bits (370), Expect = 5e-39
 Identities = 69/369 (18%), Positives = 133/369 (36%), Gaps = 15/369 (4%)

Query: 3   KFKNLKALDLSYTGING-SLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTR--LKVF 59
                ++L+   T       +      +++L     E    E   P   + L    ++  
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 60  GISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL-E 118
            +  +       +     + LQ LDL+  +   +   S L   S L+   L L  N    
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL--PSGLVGLSTLKK--LVLSANKFEN 315

Query: 119 VETENWLPTSQLKVLHLRNCNLNGTL--GFLQKQHDLKSLDLSHNKLVGS-FPAWLLQHN 175
           +   +      L  L ++       L  G L+   +L+ LDLSH+ +  S      L++ 
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
           + L+ L L+ N        +  +   L  LD++      +  Q+    L  L  L++S +
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 236 KFEGSISSSISEMKDLRFLDLSRNQFSG--ELSAPLLTGCFSLWLLDLSHNSFCGQVSPK 293
             + S       +  L+ L+L  N F          L     L +L LS           
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

Query: 294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLT 353
           F +L  +  + L +N  +   S   LS  + +  L++++N +   +PS +   S    + 
Sbjct: 496 FTSLKMMNHVDLSHNRLTS-SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553

Query: 354 VSKNLLEGN 362
           + +N L+  
Sbjct: 554 LRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  127 bits (322), Expect = 1e-32
 Identities = 66/318 (20%), Positives = 125/318 (39%), Gaps = 8/318 (2%)

Query: 6   NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQ 65
           ++++++L       ++ +        L EL+L    +   LP  L  L+ LK   +S+N+
Sbjct: 255 SVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANK 312

Query: 66  LSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVN-NTLEVETENW 124
                    ++  SL +L +  N  +       L N  NL    LS  +  T +      
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 125 LPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRL 183
              S L+ L+L             ++   L+ LDL+  +L         Q+   L+VL L
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 184 TNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI--LQKLVYLDMSKNKFEGSI 241
           +++    S +     L  L HL++  N F     Q  +++  L +L  L +S        
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492

Query: 242 SSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLG 301
             + + +K +  +DLS N+ +   S   L+    ++L +L+ N     +      L+Q  
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGIYL-NLASNHISIILPSLLPILSQQR 550

Query: 302 WLSLDNNNFSGRISNGFL 319
            ++L  N      SN + 
Sbjct: 551 TINLRQNPLDCTCSNIYF 568

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  105 bits (263), Expect = 8e-25
 Identities = 61/319 (19%), Positives = 111/319 (34%), Gaps = 43/319 (13%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIE--GPLPQCLKNLTRLKV 58
            + F +L  L +        L    +  L+NL EL+L  + IE        L+NL+ L+ 
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380

Query: 59  FGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLE 118
             +S N+              L+ LDL+    +     S   N   L             
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL------------- 427

Query: 119 VETENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGS--FPAWLLQHN 175
                       KVL+L +  L+ +          L+ L+L  N            LQ  
Sbjct: 428 ------------KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475

Query: 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
            +LE+L L+    +   Q + + L  ++H+D+S N  T    + +S +  K +YL+++ N
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL--KGIYLNLASN 533

Query: 236 KFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWL---LDLSHNSFCGQVSP 292
                + S +  +   R ++L +N             C +++       +          
Sbjct: 534 HISIILPSLLPILSQQRTINLRQNPLDCT--------CSNIYFLEWYKENMQKLEDTEDT 585

Query: 293 KFMNLTQLGWLSLDNNNFS 311
              N   L  + L +   S
Sbjct: 586 LCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 43/235 (18%), Positives = 80/235 (34%), Gaps = 12/235 (5%)

Query: 154 KSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFT 213
           K+ +  +  L    P  L       E L  + N        + S+L  L  LD++     
Sbjct: 15  KTYNCENLGLN-EIPGTLPNS---TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 214 GRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGC 273
             + ++      +L  L ++ N       +++S  K L+ L   +   S  +    L   
Sbjct: 71  W-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQ 128

Query: 274 FSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQV--LDIS 331
            +L  L L  N       PK     +L  L   NN     +S   +SS +      L+++
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLN 187

Query: 332 NNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKN--LEALEILDVSENNLS 384
            N +   I     + +    L          I   LKN  +++L +    + +  
Sbjct: 188 GNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  159 bits (404), Expect = 3e-43
 Identities = 64/404 (15%), Positives = 119/404 (29%), Gaps = 48/404 (11%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           + +   L+ +  + +               +  + N +             NL  L    
Sbjct: 444 IQRLTKLQIIYFANSPFTY------DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           + +      LP  +  L  LQ L+++ N       L +       +              
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG---------- 547

Query: 121 TENWLPTSQLKVLHLRNCNLNG--TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKL 178
                   ++++ ++   NL        LQK   L  LD  HNK+     A     N KL
Sbjct: 548 -------PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA--FGTNVKL 597

Query: 179 EVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFE 238
             L+L  N      +   +  D +  L  S N          +  +  +  +D S NK  
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657

Query: 239 G-----SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF------- 286
                 S S    +  +   + LS N+        L      +  + LS+N         
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENS 716

Query: 287 CGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNF 346
                  + N   L  + L  N  +    +   ++   L  +D+S N      P+   N 
Sbjct: 717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNS 775

Query: 347 SSLALLTVSKNL------LEGNIPVQLKNLEALEILDVSENNLS 384
           S L    +          +    P  +    +L  L +  N++ 
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  139 bits (352), Expect = 3e-36
 Identities = 61/379 (16%), Positives = 124/379 (32%), Gaps = 31/379 (8%)

Query: 26  ICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDL 85
           +     +  L+L G   +G +P  +  LT LKV    ++  + S         +    + 
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 86  SDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLG 145
             +  +  +    L     L    L         E +     S++ +   +  NL   + 
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 146 FLQKQ----HDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDF 201
           F+ K       L+ +  +++       A         E           + +LS S L  
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSNLKD 492

Query: 202 LHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEG---------SISSSISEMKDLR 252
           L  +++ +     +LP  +   L +L  L+++ N+             ++        ++
Sbjct: 493 LTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 253 FLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSG 312
              +  N      ++  L     L LLD  HN    +    F    +L  L LD N    
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE 609

Query: 313 RISNGFLSSARSLQVLDISNNKLVGQIPSW--IGNFSSLALLTVSKNLLEGNIPVQLKNL 370
            I   F +    ++ L  S+NKL   IP+     +   +  +  S N +         ++
Sbjct: 610 -IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 371 EA-----LEILDVSENNLS 384
           +         + +S N + 
Sbjct: 668 DDYKGINASTVTLSYNEIQ 686

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  136 bits (344), Expect = 3e-35
 Identities = 64/384 (16%), Positives = 121/384 (31%), Gaps = 45/384 (11%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGP---------LPQCLK 51
            +  K+L  ++L        L    + +L  L  LN+  N              L     
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545

Query: 52  NLTRLKVFGISSNQLSGSLPSV-IASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFML 110
              ++++F +  N L     S  +  +  L  LD   N  + +    + G +  L    L
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL---EAFGTNVKLTDLKL 602

Query: 111 SLVNNTL-EVETENWLPTSQLKVLHLRNCNLNG--TLGFLQKQHDLKSLDLSHNKL---- 163
               N + E+  +    T Q++ L   +  L     +   +  + + S+D S+NK+    
Sbjct: 603 D--YNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660

Query: 164 VGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI 223
                +           + L+ N          +    +  + +S+N  T  +P+N    
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKP 719

Query: 224 -------LQKLVYLDMSKNKFEG-SISSSISEMKDLRFLDLSRNQFS------GELSAPL 269
                     L  +D+  NK    S     + +  L  +D+S N FS         S   
Sbjct: 720 KDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQ-- 777

Query: 270 LTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLD 329
           L         D   N    Q          L  L + +N+    +          L +LD
Sbjct: 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLTP---QLYILD 833

Query: 330 ISNNKL-VGQIPSWIGNFSSLALL 352
           I++N      + S      +   +
Sbjct: 834 IADNPNISIDVTSVCPYIEAGMYV 857

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  132 bits (334), Expect = 5e-34
 Identities = 65/410 (15%), Positives = 128/410 (31%), Gaps = 46/410 (11%)

Query: 6   NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIE-----GPLPQCLKNLTRLKVFG 60
                +     I    +   +   + L   +L  +AI       P+ +  +   +    G
Sbjct: 372 TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG 431

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
             +N+++  +   I  LT LQ +  +++ F          +         S      E E
Sbjct: 432 NLTNRIT-FISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-------ANSDYAKQYENE 483

Query: 121 TENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWL-------- 171
             +W     L  + L NC     L  FL    +L+SL+++ N+ + +             
Sbjct: 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

Query: 172 LQHNTKLEVLRLTNNSFTG-SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI--LQKLV 228
                K+++  +  N+        S  K+  L  LD   N        ++       KL 
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-----HLEAFGTNVKLT 598

Query: 229 YLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCG 288
            L +  N+ E       +    +  L  S N+     +       + +  +D S+N    
Sbjct: 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658

Query: 289 Q-----VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL-------V 336
           +      S           ++L  N           ++   +  + +SNN +       +
Sbjct: 659 EGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSL 717

Query: 337 GQIPSWIGNFSSLALLTVSKNLLEGNIPVQLK--NLEALEILDVSENNLS 384
                   N   L  + +  N L   +    +   L  L  +DVS N  S
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS 766

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.9 bits (210), Expect = 5e-18
 Identities = 36/287 (12%), Positives = 79/287 (27%), Gaps = 44/287 (15%)

Query: 5   KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEG-----PLPQCLKNLTRLKVF 59
             ++ L  S+  +           +  +  ++   N I                      
Sbjct: 619 DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 60  GISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGI------FYLSSLGNHSNLEFFMLSLV 113
            +S N++      + A+ + +  + LS+N    I          +  N   L    + L 
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT--IDLR 736

Query: 114 NNTLEVETENWLPT--SQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWL 171
            N L   ++++  T    L  + +     +           LK+  + H           
Sbjct: 737 FNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ---------- 786

Query: 172 LQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLD 231
                         N          +    L  L I SN     + +    +  +L  LD
Sbjct: 787 ---------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEK---LTPQLYILD 833

Query: 232 MSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWL 278
           ++ N       +S+    +     L  ++         + GC +L +
Sbjct: 834 IADNPNISIDVTSVCPYIEAGMYVLLYDKT------QDIRGCDALGI 874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  151 bits (383), Expect = 8e-41
 Identities = 77/419 (18%), Positives = 142/419 (33%), Gaps = 43/419 (10%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           + +   LK L++++  I+          L NL+ ++L  N I+      L+ L       
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 61  ---------------------------ISSNQLSGSLPS-VIASLTSLQYLDLSDNYFQG 92
                                      +  N  S ++    + +L  L    L    F+ 
Sbjct: 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

Query: 93  IFYLSSLGNH-----SNLEFFMLSLVNNTL-EVETENWLPTSQLKVLHLRNCNLNGTLGF 146
              L            ++      L        +   +   + +  + L   ++   L  
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLED 302

Query: 147 LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLD 206
           + K    +SL +   +L       L      L+ L LT N  + S +     L  L +LD
Sbjct: 303 VPKHFKWQSLSIIRCQLKQFPTLDL----PFLKSLTLTMNKGSISFKKVA--LPSLSYLD 356

Query: 207 ISSNSFTGRLPQNMSTI-LQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGEL 265
           +S N+ +     + S +    L +LD+S N     +S++   +++L+ LD   +      
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVT 415

Query: 266 SAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSL 325
                     L  LD+S+ +        F+ LT L  L +  N+F     +   ++  +L
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475

Query: 326 QVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
             LD+S  +L             L LL +S N L          L +L  LD S N + 
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  140 bits (354), Expect = 7e-37
 Identities = 81/416 (19%), Positives = 150/416 (36%), Gaps = 38/416 (9%)

Query: 1   LAKFKNLKALDLSY---TGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLK 57
            +   NL  +DLSY     I  +         +  + L++  N I+    Q  + + +L 
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLH 207

Query: 58  VFGISSNQLSGSLPS-VIASLTSLQYLDLSDNYFQGIFYLSSLGNH-----SNLEFFMLS 111
              +  N  S ++    + +L  L    L    F+    L            ++      
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 112 LVNNTL-EVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAW 170
           L        +   +   + +  + L   ++   L  + K    +SL +   +L       
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLKQFPTLD 326

Query: 171 L-------LQHN-----------TKLEVLRLTNNSFT--GSLQLSNSKLDFLHHLDISSN 210
           L       L  N             L  L L+ N+ +  G    S+   + L HLD+S N
Sbjct: 327 LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 211 SFTGRLPQNMSTILQKLVYLDMSKNKFEGSIS-SSISEMKDLRFLDLSRNQFSGELSAPL 269
                +       L++L +LD   +  +     S+   ++ L +LD+S           +
Sbjct: 387 GAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI-DFDGI 443

Query: 270 LTGCFSLWLLDLSHNSFCGQVSPK-FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVL 328
             G  SL  L ++ NSF        F N T L +L L        IS G   +   LQ+L
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLL 502

Query: 329 DISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
           ++S+N L+    S      SL+ L  S N +E +  +     ++L   +++ N+++
Sbjct: 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  136 bits (344), Expect = 2e-35
 Identities = 88/400 (22%), Positives = 127/400 (31%), Gaps = 29/400 (7%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEG-PLPQCLKNLTRLKVF 59
            +   +L+ L    T +  SLE+  I +L  L +LN+  N I    LP    NLT L   
Sbjct: 100 FSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158

Query: 60  GISSNQLSGSLPSVIASLT----SLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNN 115
            +S N +     + +  L         LD+S N    I           L    L    N
Sbjct: 159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQ--DQAFQGIKLHELTLRGNFN 216

Query: 116 TLEVETENWLPTSQLKVLHLRNCNLNG-------TLGFLQKQHDL--KSLDLSHNKLVGS 166
           +  +        + L V  L                  ++   D+      L++      
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276

Query: 167 FPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK 226
                      +  + L   S          K      L I           +    L  
Sbjct: 277 DI-VKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLKQFPTLD----LPF 329

Query: 227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSG-ELSAPLLTGCFSLWLLDLSHNS 285
           L  L ++ NK  GSIS     +  L +LDLSRN  S     +    G  SL  LDLS N 
Sbjct: 330 LKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387

Query: 286 FCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGN 345
               +S  FM L +L  L   ++            S   L  LDIS              
Sbjct: 388 AII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446

Query: 346 FSSLALLTVSKNLLEGNIPVQ-LKNLEALEILDVSENNLS 384
            +SL  L ++ N  + N       N   L  LD+S+  L 
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  130 bits (330), Expect = 1e-33
 Identities = 74/416 (17%), Positives = 133/416 (31%), Gaps = 44/416 (10%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
             + K +DLS+  +   L++        L  L+L    IE    +    L  L    ++ 
Sbjct: 31  PSSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89

Query: 64  NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETEN 123
           N +    P   + LTSL+ L   +     +     +G    L+   L++ +N +      
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLASLES-FPIGQLITLKK--LNVAHNFIHSCKLP 146

Query: 124 WL--PTSQLKVLHLRNCNL----NGTLGFLQK-QHDLKSLDLSHNKLVGSFPAWLLQHNT 176
                 + L  + L    +       L FL++      SLD+S N +         Q   
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQ-GI 204

Query: 177 KLEVLRLTNNSFTGSLQ------LSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVY- 229
           KL  L L  N  + ++       L+   +  L   +            ++   L  +   
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 230 -LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWL---------- 278
              ++              + ++  + L+          P      SL +          
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPT 324

Query: 279 --------LDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGF-LSSARSLQVLD 329
                   L L+ N   G +S K + L  L +L L  N  S      +      SL+ LD
Sbjct: 325 LDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 330 ISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQ-LKNLEALEILDVSENNLS 384
           +S N  +  + +       L  L    + L+         +LE L  LD+S  N  
Sbjct: 383 LSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 38/186 (20%), Positives = 75/186 (40%), Gaps = 11/186 (5%)

Query: 204 HLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSG 263
                    + ++P +   I      +D+S N  +   S S S   +L++LDLSR +   
Sbjct: 15  TYQCMDQKLS-KVPDD---IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

Query: 264 ELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSAR 323
            +      G   L  L L+ N         F  LT L  L       +  + +  +    
Sbjct: 71  -IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLI 128

Query: 324 SLQVLDISNNKLVG-QIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEAL----EILDV 378
           +L+ L++++N +   ++P++  N ++L  + +S N ++      L+ L         LD+
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 379 SENNLS 384
           S N + 
Sbjct: 189 SLNPID 194

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  139 bits (351), Expect = 4e-36
 Identities = 80/409 (19%), Positives = 143/409 (34%), Gaps = 38/409 (9%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
               + L+ L+L       +++ +    L NL  L+L  + I    P   + L  L    
Sbjct: 44  FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103

Query: 61  ISSNQLSGSL--PSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNN--- 115
           +    LS ++       +L +L  LDLS N  + ++   S G  ++L+   +   +N   
Sbjct: 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS--IDFSSNQIF 161

Query: 116 TLEVETENWLPTSQLKVLHLRNCNLN-------GTLGFLQKQHDLKSLDLSHNKLVGSFP 168
            +       L    L    L   +L        G      +   L+ LD+S N       
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221

Query: 169 AWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLD-------------FLHHLDISSNSFTGR 215
                  +K +   L               +               + HLD+S       
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-S 280

Query: 216 LPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFS 275
           L   +   L+ L  L+++ NK       +   + +L+ L+LS N    EL +    G   
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPK 339

Query: 276 LWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL 335
           +  +DL  N         F  L +L  L L +N  +       +    S+  + +S NKL
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT------TIHFIPSIPDIFLSGNKL 393

Query: 336 VGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
           V  +P    N ++  +      L   +I   L  +  L+IL +++N  S
Sbjct: 394 V-TLPK--INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  124 bits (313), Expect = 4e-31
 Identities = 78/363 (21%), Positives = 130/363 (35%), Gaps = 30/363 (8%)

Query: 46  LPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNL 105
           +PQ L    RL    +S N +     S    L  LQ L+L   Y        +  N  NL
Sbjct: 19  VPQVLNTTERLL---LSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNL 75

Query: 106 EFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTL---GFLQKQHDLKSLDLSHNK 162
               L   +    +  + +     L  L L  C L+  +   G+ +    L  LDLS N+
Sbjct: 76  RILDLGS-SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134

Query: 163 LVGSFPAWLLQHNTKLEVLRLTNNSFTG--SLQLSNSKLDFLHHLDISSNSFTGRLPQNM 220
           +   +          L+ +  ++N        +L   +   L    +++NS   R+  + 
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194

Query: 221 STILQK-----LVYLDMSKNKF------------EGSISSSISEMKDLRFLDLSRNQFSG 263
              +       L  LD+S N +              S + S+     +       +    
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK- 253

Query: 264 ELSAPLLTGCF--SLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSS 321
           +       G    S+  LDLSH       S  F  L  L  L+L  N  + +I++     
Sbjct: 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYG 312

Query: 322 ARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSEN 381
             +LQVL++S N L     S       +A + + KN +        K LE L+ LD+ +N
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372

Query: 382 NLS 384
            L+
Sbjct: 373 ALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  121 bits (305), Expect = 4e-30
 Identities = 85/425 (20%), Positives = 140/425 (32%), Gaps = 45/425 (10%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLT--RLKV 58
               K L  LDLS   I     +    +L +L  ++   N I       L+ L    L  
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 59  FGISSNQLSGSLPSVIASL------TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSL 112
           F +++N L   +               L+ LD+S N +      +     S  + F L L
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 113 VNN------------TLEVETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLS 159
            ++              +  T   L  S ++ L L +  +        +   DLK L+L+
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298

Query: 160 HNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQN 219
           +NK+              L+VL L+ N        +   L  + ++D+  N     +   
Sbjct: 299 YNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQ 356

Query: 220 MSTILQKLVYLDMSKNKFEG---------------SISSSISEMKDLRFLDLSRNQFSGE 264
               L+KL  LD+  N                    + +          + LS N+    
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416

Query: 265 LSAPLLTGCFSLWLLDLSHNSFCGQVSPK-FMNLTQLGWLSLDNNNFSGR----ISNGFL 319
                L     L +L L+ N F      +       L  L L  N         +     
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 320 SSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVS 379
                LQVL +++N L    P    + ++L  L+++ N L       L     LEILD+S
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN--LEILDIS 534

Query: 380 ENNLS 384
            N L 
Sbjct: 535 RNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  118 bits (297), Expect = 4e-29
 Identities = 75/385 (19%), Positives = 142/385 (36%), Gaps = 40/385 (10%)

Query: 3   KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGIS 62
           +   L+ LD+S  G               +       NAI       L     +   G  
Sbjct: 202 RNMVLEILDVSGNGWT-------------VDITGNFSNAISKSQAFSLILAHHIMGAGFG 248

Query: 63  SNQLSGSLPSVIASL--TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLE-V 119
            + +     +  A L  +S+++LDLS  +   +          +L+  +L+L  N +  +
Sbjct: 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS-RVFETLKDLK--VLNLAYNKINKI 305

Query: 120 ETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKL 178
             E +     L+VL+L    L             +  +DL  N +         +   KL
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKL 364

Query: 179 EVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFE 238
           + L L +N+ T     +   +  +  + +S N         +  I      + +S+N+ E
Sbjct: 365 QTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLE 414

Query: 239 G-SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK---- 293
              I   +  +  L+ L L++N+FS        +   SL  L L  N        +    
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 294 -FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALL 352
            F  L+ L  L L++N  +  +  G  S   +L+ L +++N+L   +       ++L +L
Sbjct: 475 VFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEIL 531

Query: 353 TVSKNLLEGNIPVQLKNLEALEILD 377
            +S+N L    P    +L  L+I  
Sbjct: 532 DISRNQLLAPNPDVFVSLSVLDITH 556

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  112 bits (281), Expect = 5e-27
 Identities = 65/345 (18%), Positives = 128/345 (37%), Gaps = 29/345 (8%)

Query: 1   LAKFKNLKALDLSYTGINGSLEN--QGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKV 58
           L    ++      +  I    +N   G+    ++  L+L    +     +  + L  LKV
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARS-SVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 59  FGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLE 118
             ++ N+++         L +LQ L+LS N    ++  S+      + +  + L  N + 
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS-SNFYGLPKVAY--IDLQKNHIA 351

Query: 119 VETENWLPT-SQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTK 177
           +  +       +L+ L LR+  L      +     +  + LS NKLV      L + N  
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALT----TIHFIPSIPDIFLSGNKLVT-----LPKINLT 402

Query: 178 LEVLRLTNNSFTG-SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNK 236
             ++ L+ N      +     ++  L  L ++ N F+        +    L  L + +N 
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

Query: 237 FEGSISSSISE-----MKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVS 291
            + +  + +       +  L+ L L+ N  +  L   + +   +L  L L+ N     V 
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRL--TVL 519

Query: 292 PKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV 336
                   L  L +  N       + F     SL VLDI++NK +
Sbjct: 520 SHNDLPANLEILDISRNQLLAPNPDVF----VSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  109 bits (275), Expect = 2e-26
 Identities = 83/361 (22%), Positives = 134/361 (37%), Gaps = 23/361 (6%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
               K+LK L+L+Y  IN  + ++    L NL  LNL  N +          L ++    
Sbjct: 286 FETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           +  N ++         L  LQ LDL DN    I ++ S+ +        + L  N L   
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD--------IFLSGNKLVTL 396

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
            +  L  + + +   R  NL+  L FL +   L+ L L+ N+            N  LE 
Sbjct: 397 PKINLTANLIHLSENRLENLD-ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455

Query: 181 LRLTNNSFTGSLQLSNSKLDF-----LHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
           L L  N    + +       F     L  L ++ N     LP  + + L  L  L ++ N
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSN 514

Query: 236 KFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF-CGQVSPKF 294
           +      + +     L  LD+SRNQ    L AP      SL +LD++HN F C      F
Sbjct: 515 RLTVLSHNDLPAN--LEILDISRNQ----LLAPNPDVFVSLSVLDITHNKFICECELSTF 568

Query: 295 MNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTV 354
           +N      +++               S  SL  L          + S   +   +  +T+
Sbjct: 569 INWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTL 628

Query: 355 S 355
           +
Sbjct: 629 T 629

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  104 bits (262), Expect = 1e-24
 Identities = 64/339 (18%), Positives = 119/339 (35%), Gaps = 25/339 (7%)

Query: 69  SLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTS 128
           +L  V   L + + L LS NY + +   SS      L+   L      L ++ E +    
Sbjct: 15  NLTQVPQVLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 129 QLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKL-VGSFPAWLLQHNTKLEVLRLTNN 186
            L++L L +  +        Q    L  L L    L          ++   L  L L+ N
Sbjct: 74  NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

Query: 187 SFTG-SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK-LVYLDMSKNKFEGSISSS 244
                 L  S  KL+ L  +D SSN         +  +  K L +  ++ N     +S  
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193

Query: 245 ISEM------KDLRFLDLSRNQFSGE-----------LSAPLLTGCFSLWLLDLSHNSFC 287
             +         L  LD+S N ++ +             A  L     +       ++  
Sbjct: 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253

Query: 288 GQVSPKFMNL--TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGN 345
                 F  L  + +  L L +      +++    + + L+VL+++ NK+          
Sbjct: 254 DPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYG 312

Query: 346 FSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
             +L +L +S NLL          L  +  +D+ +N+++
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  132 bits (334), Expect = 1e-35
 Identities = 77/378 (20%), Positives = 148/378 (39%), Gaps = 33/378 (8%)

Query: 7   LKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQL 66
              L      IN   +     +L   I   L+  ++   +    + L  +    ++  ++
Sbjct: 2   AATLATLPAPIN---QIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 67  SGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLP 126
           +      I  LT+L+YL+L+ N    I  LS+L     L    L +  N +  +      
Sbjct: 57  AS--IQGIEYLTNLEYLNLNGNQITDISPLSNL---VKLT--NLYIGTNKIT-DISALQN 108

Query: 127 TSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNN 186
            + L+ L+L   N++  +  L     + SL+L  N  +       L + T L  L +T +
Sbjct: 109 LTNLRELYLNEDNISD-ISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTES 165

Query: 187 SFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSIS 246
                  ++N  L  L+ L ++ N         +++ L  L Y     N+      + ++
Sbjct: 166 KVKDVTPIAN--LTDLYSLSLNYNQIED--ISPLAS-LTSLHYFTAYVNQITDI--TPVA 218

Query: 247 EMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLD 306
            M  L  L +  N+ +       L     L  L++  N           +LT+L  L++ 
Sbjct: 219 NMTRLNSLKIGNNKIT---DLSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVG 273

Query: 307 NNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQ 366
           +N  S  IS   L++   L  L ++NN+L  +    IG  ++L  L +S+N +    P  
Sbjct: 274 SNQISD-ISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-- 328

Query: 367 LKNLEALEILDVSENNLS 384
           L +L  ++  D +   + 
Sbjct: 329 LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  104 bits (261), Expect = 3e-25
 Identities = 69/313 (22%), Positives = 125/313 (39%), Gaps = 30/313 (9%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           +    NL+ L+L+   I        +  L  L  L +  N I       L+NLT L+   
Sbjct: 62  IEYLTNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELY 116

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           ++ + +S   P  +A+LT +  L+L  N    +  LS L N + L +  L++  + ++ +
Sbjct: 117 LNEDNISDISP--LANLTKMYSLNLGAN--HNLSDLSPLSNMTGLNY--LTVTESKVK-D 169

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
                  + L  L L    +   +  L     L       N++    P   + + T+L  
Sbjct: 170 VTPIANLTDLYSLSLNYNQIED-ISPLASLTSLHYFTAYVNQITDITP---VANMTRLNS 225

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI--LQKLVYLDMSKNKFE 238
           L++ NN  T    L+N  L  L  L+I +N  +     +++ +  L KL  L++  N+  
Sbjct: 226 LKIGNNKITDLSPLAN--LSQLTWLEIGTNQIS-----DINAVKDLTKLKMLNVGSNQIS 278

Query: 239 GSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLT 298
               S ++ +  L  L L+ NQ   E     + G  +L  L LS N           +L+
Sbjct: 279 D--ISVLNNLSQLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQNHI--TDIRPLASLS 333

Query: 299 QLGWLSLDNNNFS 311
           ++      N    
Sbjct: 334 KMDSADFANQVIK 346

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  124 bits (313), Expect = 2e-31
 Identities = 100/403 (24%), Positives = 146/403 (36%), Gaps = 34/403 (8%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAI-EGPLPQCLKNLTRLKVF 59
            +   +L+ L    T +  SLEN  I  LK L ELN+  N I    LP+   NLT L+  
Sbjct: 96  FSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 60  GISSNQLSGSLPSVIASLTSLQY----LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNN 115
            +SSN++     + +  L  +      LDLS N    I      G    +    L+L NN
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI----QPGAFKEIRLHKLTLRNN 210

Query: 116 TLEVETENW----LPTSQLKVLHLRNCNLNGTLGFLQKQH-------DLKSLDLSHNKLV 164
              +         L   ++  L L      G L    K          ++   L++    
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 165 GSFPAWLLQHNTKLEVLRLTNNSFTGSLQLS-NSKLDFLHHLDISSNSFTGRLPQNMSTI 223
                 L    T +    L + +       S N     L  ++     F        +  
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP-------TLK 323

Query: 224 LQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSG-ELSAPLLTGCFSLWLLDLS 282
           L+ L  L  + NK   + S    ++  L FLDLSRN  S     +    G  SL  LDLS
Sbjct: 324 LKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 283 HNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSW 342
            N     +S  F+ L QL  L   ++N           S R+L  LDIS+          
Sbjct: 382 FNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 343 IGNFSSLALLTVSKNLLEGNIPVQ-LKNLEALEILDVSENNLS 384
               SSL +L ++ N  + N        L  L  LD+S+  L 
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  116 bits (293), Expect = 7e-29
 Identities = 87/401 (21%), Positives = 149/401 (37%), Gaps = 30/401 (7%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           +   K LK L++++  I      +    L NL  L+L  N I+      L+ L ++ +  
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 61  I----SSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLV--- 113
           +    S N ++  +         L  L L +N+       + +   + LE   L L    
Sbjct: 180 LSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 114 --NNTLEVETENWLPTSQLKVLHLR----NCNLNGTLGFLQKQHDLKSLDLSHNKLVGSF 167
              N  + +         L +   R    +  L+  +       ++ S  L    +    
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 168 PAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKL 227
                 +N   + L L N  F    Q    KL  L  L  +SN             L  L
Sbjct: 299 D---FSYNFGWQHLELVNCKFG---QFPTLKLKSLKRLTFTSNKGGNAFS---EVDLPSL 349

Query: 228 VYLDMSKNK--FEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNS 285
            +LD+S+N   F+G  S S      L++LDLS N     +S     G   L  LD  H++
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMS-SNFLGLEQLEHLDFQHSN 407

Query: 286 FCGQVSPK-FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWI- 343
                    F++L  L +L + + +      NG  +   SL+VL ++ N         I 
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 344 GNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
               +L  L +S+  LE   P    +L +L++L+++ N L 
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  116 bits (292), Expect = 1e-28
 Identities = 70/341 (20%), Positives = 117/341 (34%), Gaps = 22/341 (6%)

Query: 6   NLKALDLSYTGINGSLENQGICELKNLIELNLEG------NAIEGPLPQCLKNLTRLKVF 59
            L  L L     + ++    I  L  L    L          +E      L+ L  L + 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 60  GISSNQLSGS---LPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNT 116
                 L      +  +   LT++    L     + +   S      +LE          
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 117 LEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKL-VGSFPAWLLQHN 175
                   L    LK L   + N  G          L+ LDLS N L      +      
Sbjct: 321 -------TLKLKSLKRLTFTS-NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
           T L+ L L+ N    ++  +   L+ L HLD   ++       ++   L+ L+YLD+S  
Sbjct: 373 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 236 KFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK-F 294
               + +   + +  L  L ++ N F       + T   +L  LDLS      Q+SP  F
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAF 490

Query: 295 MNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL 335
            +L+ L  L++ +N     + +G      SLQ + +  N  
Sbjct: 491 NSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  111 bits (279), Expect = 6e-27
 Identities = 70/415 (16%), Positives = 136/415 (32%), Gaps = 41/415 (9%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
             + K LDLS+  +   L +        L  L+L    I+       ++L+ L    ++ 
Sbjct: 27  PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 64  NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEV--ET 121
           N +        + L+SLQ L   +     +     +G+   L+   L++ +N ++     
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKE--LNVAHNLIQSFKLP 142

Query: 122 ENWLPTSQLKVLHLRNCNL----NGTLGFLQK-QHDLKSLDLSHNKLVGSFPAWLLQHNT 176
           E +   + L+ L L +  +       L  L +      SLDLS N +             
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAF-KEI 200

Query: 177 KLEVLRLTNNSFTGSL------QLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYL 230
           +L  L L NN  + ++       L+  ++  L   +  +     +  ++    L  L   
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 231 DMSKNK---FEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFC 287
           +        +   I    + + ++    L               G   L L++     F 
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 288 G----------------QVSPKFMNLTQLGWLSLDNNNFSG-RISNGFLSSARSLQVLDI 330
                              +   ++L  L +L L  N  S     +       SL+ LD+
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 331 SNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPV-QLKNLEALEILDVSENNLS 384
           S N ++  + S       L  L    + L+         +L  L  LD+S  +  
Sbjct: 381 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  110 bits (277), Expect = 1e-26
 Identities = 88/402 (21%), Positives = 148/402 (36%), Gaps = 49/402 (12%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNL----IELNLEGNAIEGPLPQCLKNLTRL 56
            +   NL+ LDLS   I  S+    +  L  +    + L+L  N +    P   K + RL
Sbjct: 145 FSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202

Query: 57  KVFGISSNQLSGSLPS-VIASLTSLQYLDLSDNYFQGI-----FYLSSLGNHSNLEFFML 110
               + +N  S ++    I  L  L+   L    F+       F  S+L    NL     
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 111 SLVNNTLEV------------------------ETENWLPTSQLKVLHLRNCNLNGTLGF 146
            L      +                          +++      + L L NC        
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ-FPT 321

Query: 147 LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFT--GSLQLSNSKLDFLHH 204
           L+ +  LK L  + NK   +F          LE L L+ N  +  G    S+     L +
Sbjct: 322 LKLKS-LKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 205 LDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSI-SEMKDLRFLDLSRNQFSG 263
           LD+S N     +  N    L++L +LD   +  +     S+   +++L +LD+S      
Sbjct: 378 LDLSFNGVI-TMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR- 434

Query: 264 ELSAPLLTGCFSLWLLDLSHNSFCGQVSPK-FMNLTQLGWLSLDNNNFSGRISNGFLSSA 322
                +  G  SL +L ++ NSF     P  F  L  L +L L       ++S    +S 
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSL 493

Query: 323 RSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIP 364
            SLQVL++++N+L           +SL  + +  N  + + P
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.2 bits (219), Expect = 4e-19
 Identities = 44/244 (18%), Positives = 80/244 (32%), Gaps = 33/244 (13%)

Query: 3   KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIE--GPLPQCLKNLTRLKVFG 60
           K K+LK L  +      +        L +L  L+L  N +   G   Q     T LK   
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVD---LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           +S N +  ++ S    L  L++LD   +  + +   S   +  NL               
Sbjct: 380 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI-------------- 424

Query: 121 TENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLE 179
                       L + + +      G       L+ L ++ N    +F   +      L 
Sbjct: 425 -----------YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 180 VLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEG 239
            L L+          + + L  L  L+++SN     +P  +   L  L  + +  N ++ 
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 532

Query: 240 SISS 243
           S   
Sbjct: 533 SCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.9 bits (161), Expect = 6e-12
 Identities = 40/184 (21%), Positives = 77/184 (41%), Gaps = 11/184 (5%)

Query: 206 DISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGEL 265
                +F  ++P N+    +    LD+S N      S S     +L+ LDLSR +    +
Sbjct: 13  QCMELNFY-KIPDNLPFSTK---NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TI 67

Query: 266 SAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSL 325
                     L  L L+ N         F  L+ L  L     N +  + N  +   ++L
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTL 126

Query: 326 QVLDISNNKL-VGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEI----LDVSE 380
           + L++++N +   ++P +  N ++L  L +S N ++      L+ L  + +    LD+S 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 381 NNLS 384
           N ++
Sbjct: 187 NPMN 190

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  122 bits (307), Expect = 8e-31
 Identities = 72/402 (17%), Positives = 148/402 (36%), Gaps = 24/402 (5%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
              +K+LDLS+  I   + +  +    NL  L L+ + I         +L  L+   +S 
Sbjct: 25  TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 64  NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETEN 123
           N LS    S    L+SL+YL+L  N +Q +   S   N +NL+   +  V    E+   +
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 124 WLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLR 182
           +   + L  L ++  +L       L+   D+  L L  ++             + +  L 
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRYLE 202

Query: 183 LTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI---------LQKLVYLDMS 233
           L + +            +    +   +   +    ++ + +         L ++ + D +
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 234 KNK---FEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFS----LWLLDLSHNSF 286
            N    F  S S  +SE+  +  + + R           L+  +S    +  + + ++  
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

Query: 287 CGQVSPKFMNLTQLGWLSLDNNNFS--GRISNGFLSSARSLQVLDISNNKL--VGQIPSW 342
                    +L  L +L L  N        ++    +  SLQ L +S N L  + +    
Sbjct: 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382

Query: 343 IGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
           +    +L  L +S+N     +P   +  E +  L++S   + 
Sbjct: 383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  122 bits (307), Expect = 8e-31
 Identities = 70/404 (17%), Positives = 139/404 (34%), Gaps = 34/404 (8%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
                NL+ L +        +       L +L EL ++  ++     Q LK++  +    
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           +  ++ +  L      L+S++YL+L D       +     +  +     L+   + L  E
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
           + N L      +L L     +           L  L   +                 +  
Sbjct: 239 SFNELLKLLRYILELSEVEFDD--------CTLNGLGDFNPSESDVVSELGKVETVTIRR 290

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGS 240
           L +        L    S L+ +  + + ++     +P + S  L+ L +LD+S+N     
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 241 I---SSSISEMKDLRFLDLSRNQFSG-ELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMN 296
               S+       L+ L LS+N     + +  +L    +L  LD+S N+F   +      
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408

Query: 297 LTQLGWLSLDNNNFSGRISNGFLSSAR-----------------SLQVLDISNNKLVGQI 339
             ++ +L+L +      +      +                    LQ L IS NKL   +
Sbjct: 409 PEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TL 466

Query: 340 PSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383
           P     F  L ++ +S+N L+         L +L+ + +  N  
Sbjct: 467 PDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  111 bits (279), Expect = 5e-27
 Identities = 79/432 (18%), Positives = 145/432 (33%), Gaps = 61/432 (14%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L    NL+ L L  + IN ++E      L +L  L+L  N +          L+ LK   
Sbjct: 46  LRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104

Query: 61  ISSNQLSG-SLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL-E 118
           +  N      + S+  +LT+LQ L + +               ++L    L +   +L  
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN--ELEIKALSLRN 162

Query: 119 VETENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAW------- 170
            ++++      +  L L        L  F      ++ L+L    L     +        
Sbjct: 163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVS 222

Query: 171 -----------------------LLQHNTKLEVLRLTNNSFTGSLQLSNSKLDF------ 201
                                  LL++  +L  +   + +  G    + S+ D       
Sbjct: 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282

Query: 202 -----LHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDL 256
                +  L I            + ++L+K+  + +  +K      S    +K L FLDL
Sbjct: 283 VETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341

Query: 257 SRNQFSGELSAP--LLTGCFSLWLLDLSHN--SFCGQVSPKFMNLTQLGWLSLDNNNFSG 312
           S N    E            SL  L LS N      +     + L  L  L +  N F  
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH- 400

Query: 313 RISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEA 372
            + +        ++ L++S+  +   + +      +L +L VS N L+ +  + L     
Sbjct: 401 PMPDSC-QWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD-SFSLFLPR--- 452

Query: 373 LEILDVSENNLS 384
           L+ L +S N L 
Sbjct: 453 LQELYISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.1 bits (185), Expect = 6e-15
 Identities = 41/207 (19%), Positives = 71/207 (34%), Gaps = 28/207 (13%)

Query: 202 LHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQF 261
               D  S SFT  +P     +   +  LD+S NK        +    +L+ L L  ++ 
Sbjct: 7   SGVCDGRSRSFT-SIPSG---LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 262 SG-----------------------ELSAPLLTGCFSLWLLDLSHNSF-CGQVSPKFMNL 297
           +                         LS+       SL  L+L  N +    V+  F NL
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 298 TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN 357
           T L  L + N      I     +   SL  L+I    L       + +   +  LT+  +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 358 LLEGNIPVQLKNLEALEILDVSENNLS 384
                + +    L ++  L++ + NL+
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLA 209

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
            + L+ LD+S   ++          L  L EL +  N ++  LP        L V  IS 
Sbjct: 430 PQTLEVLDVSNNNLDSFSLF-----LPRLQELYISRNKLKT-LPDAS-LFPVLLVMKISR 482

Query: 64  NQLSGSLPSVIASLTSLQYLDLSDNYFQ 91
           NQL      +   LTSLQ + L  N + 
Sbjct: 483 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  119 bits (301), Expect = 3e-30
 Identities = 83/384 (21%), Positives = 153/384 (39%), Gaps = 35/384 (9%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           +    NL  ++ S   +        +  L  L+++ +  N I    P  L NLT L    
Sbjct: 64  VEYLNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           + +NQ++      + +LT+L  L+LS N    I   S+L   ++L+   LS  N   +++
Sbjct: 119 LFNNQITD--IDPLKNLTNLNRLELSSNTISDI---SALSGLTSLQQ--LSFGNQVTDLK 171

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
               L    L+ L + +  ++  +  L K  +L+SL  ++N++    P   L   T L+ 
Sbjct: 172 PLANLT--TLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITP---LGILTNLDE 225

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGS 240
           L L  N       L++  L  L  LD+++N  +   P +    L KL  L +  N+    
Sbjct: 226 LSLNGNQLKDIGTLAS--LTNLTDLDLANNQISNLAPLSG---LTKLTELKLGANQISNI 280

Query: 241 ISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQL 300
             S ++ +  L  L+L+ NQ         ++   +L  L L  N+          +LT+L
Sbjct: 281 --SPLAGLTALTNLELNENQLE---DISPISNLKNLTYLTLYFNNISD--ISPVSSLTKL 333

Query: 301 GWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE 360
             L   NN  S   S   L++   +  L   +N++    P  + N + +  L ++     
Sbjct: 334 QRLFFYNNKVSDVSSLANLTN---INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388

Query: 361 GNIPVQLKNLEALEILDVSENNLS 384
                   N+     +      L 
Sbjct: 389 NAPVNYKANVSIPNTVKNVTGALI 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  118 bits (297), Expect = 1e-29
 Identities = 82/384 (21%), Positives = 148/384 (38%), Gaps = 37/384 (9%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
                      L  T +  ++      +L  +  L  +   I+      ++ L  L    
Sbjct: 20  DTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQIN 74

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
            S+NQL+   P  + +LT L  + +++N    I  L++L   +NL    L+L NN +  +
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANL---TNLT--GLTLFNNQIT-D 126

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
            +     + L  L L +  ++  +  L     L+ L    N++    P   L + T LE 
Sbjct: 127 IDPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQVTDLKP---LANLTTLER 181

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGS 240
           L +++N  +    L+   L  L  L  ++N  +   P  +   L  L  L ++ N+ +  
Sbjct: 182 LDISSNKVSDISVLAK--LTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKD- 235

Query: 241 ISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQL 300
              +++ + +L  LDL+ NQ S       L+G   L  L L  N            LT L
Sbjct: 236 -IGTLASLTNLTDLDLANNQISNL---APLSGLTKLTELKLGANQI--SNISPLAGLTAL 289

Query: 301 GWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE 360
             L L+ N          +S+ ++L  L +  N +    P  + + + L  L    N + 
Sbjct: 290 TNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344

Query: 361 GNIPVQLKNLEALEILDVSENNLS 384
                 L NL  +  L    N +S
Sbjct: 345 D--VSSLANLTNINWLSAGHNQIS 366

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  117 bits (295), Expect = 2e-29
 Identities = 92/384 (23%), Positives = 146/384 (38%), Gaps = 35/384 (9%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L     L  + ++   I        +  L NL  L L  N I    P  LKNLT L    
Sbjct: 86  LKNLTKLVDILMNNNQIADI---TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLE 140

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           +SSN +S    S ++ LTSLQ L   +     +  L  L N + LE   L + +N +  +
Sbjct: 141 LSSNTISD--ISALSGLTSLQQLSFGNQ----VTDLKPLANLTTLE--RLDISSNKVS-D 191

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
                  + L+ L   N  ++  +  L    +L  L L+ N+L        L   T L  
Sbjct: 192 ISVLAKLTNLESLIATNNQISD-ITPLGILTNLDELSLNGNQLKDIGT---LASLTNLTD 247

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGS 240
           L L NN  +    LS   L  L  L + +N  +   P      L  L  L++++N+ E  
Sbjct: 248 LDLANNQISNLAPLSG--LTKLTELKLGANQISNISPLAG---LTALTNLELNENQLEDI 302

Query: 241 ISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQL 300
             S IS +K+L +L L  N  S       ++    L  L   +N           NLT +
Sbjct: 303 --SPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKV--SDVSSLANLTNI 355

Query: 301 GWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE 360
            WLS  +N  S       L++   +  L +++        ++  N S    +      L 
Sbjct: 356 NWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL- 411

Query: 361 GNIPVQLKNLEALEILDVSENNLS 384
              P  + +  +    D++ N  S
Sbjct: 412 -IAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  110 bits (277), Expect = 6e-27
 Identities = 93/368 (25%), Positives = 142/368 (38%), Gaps = 32/368 (8%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L    NL  L+LS   I+       +  L +L +L+  GN +    P  L NLT L+   
Sbjct: 130 LKNLTNLNRLELSSNTISDI---SALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLD 183

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           ISSN++S    SV+A LT+L+ L  ++N    I   + LG  +NL+   LSL  N L+ +
Sbjct: 184 ISSNKVSD--ISVLAKLTNLESLIATNNQISDI---TPLGILTNLD--ELSLNGNQLK-D 235

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
                  + L  L L N  ++  L  L     L  L L  N++    P   L   T L  
Sbjct: 236 IGTLASLTNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQISNISP---LAGLTALTN 291

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGS 240
           L L  N       +SN  L  L +L +  N+ +   P +    L KL  L    NK    
Sbjct: 292 LELNENQLEDISPISN--LKNLTYLTLYFNNISDISPVSS---LTKLQRLFFYNNKVSD- 345

Query: 241 ISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQL 300
             SS++ + ++ +L    NQ S       L     +  L L+  ++         N++  
Sbjct: 346 -VSSLANLTNINWLSAGHNQIS---DLTPLANLTRITQLGLNDQAWTNAPVNYKANVSI- 400

Query: 301 GWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE 360
              +   N     I+   +S   S    DI+ N            FS    +        
Sbjct: 401 --PNTVKNVTGALIAPATISDGGSYTEPDITWNLP-SYTNEVSYTFSQPVTIGKGTTTFS 457

Query: 361 GNIPVQLK 368
           G +   LK
Sbjct: 458 GTVTQPLK 465

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 12/142 (8%)

Query: 243 SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGW 302
            + + + +     L +   +  +S    T    +  L         +       L  L  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQ 72

Query: 303 LSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGN 362
           ++  NN  +       L +   L  + ++NN++    P  + N ++L  LT+  N +   
Sbjct: 73  INFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI 127

Query: 363 IPVQLKNLEALEILDVSENNLS 384
            P  LKNL  L  L++S N +S
Sbjct: 128 DP--LKNLTNLNRLELSSNTIS 147

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  118 bits (297), Expect = 1e-29
 Identities = 73/334 (21%), Positives = 115/334 (34%), Gaps = 32/334 (9%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
               + LDL    I  +L         +L EL L  N +    P    NL  L+  G+ S
Sbjct: 31  PTETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 64  NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETEN 123
           N+L      V   L++L  LD+S+N    +                              
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIVIL--------------------------LDYM 123

Query: 124 WLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLR 182
           +     LK L + + +L   +       + L+ L L    L  S P   L H   L VLR
Sbjct: 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLR 182

Query: 183 LTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSIS 242
           L + +       S  +L  L  L+IS   +   +  N    L  L  L ++         
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPY 241

Query: 243 SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGW 302
            ++  +  LRFL+LS N  S  +   +L     L  + L            F  L  L  
Sbjct: 242 LAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300

Query: 303 LSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV 336
           L++  N  +  +      S  +L+ L + +N L 
Sbjct: 301 LNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  113 bits (284), Expect = 6e-28
 Identities = 52/278 (18%), Positives = 103/278 (37%), Gaps = 8/278 (2%)

Query: 110 LSLVNNTL-EVETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSF 167
           L L  N +  +  + +     L+ L L    ++    G      +L++L L  N+L    
Sbjct: 37  LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LI 95

Query: 168 PAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKL 227
           P  +    + L  L ++ N     L      L  L  L++  N     +     + L  L
Sbjct: 96  PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSL 154

Query: 228 VYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFC 287
             L + K       + ++S +  L  L L     +  +        + L +L++SH  + 
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYL 213

Query: 288 GQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFS 347
             ++P  +    L  LS+ + N +  +    +     L+ L++S N +     S +    
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272

Query: 348 SLALLTVSKNLLEGNIPVQ-LKNLEALEILDVSENNLS 384
            L  + +    L   +     + L  L +L+VS N L+
Sbjct: 273 RLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 97.5 bits (243), Expect = 2e-22
 Identities = 52/234 (22%), Positives = 97/234 (41%), Gaps = 6/234 (2%)

Query: 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS 211
           + + LDL  N++  +           LE L L  N  +     + + L  L  L + SN 
Sbjct: 33  ETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 212 FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLT 271
               +P  + T L  L  LD+S+NK    +     ++ +L+ L++  N     +S    +
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFS 149

Query: 272 GCFSLWLLDLSHNSFCGQVSPK-FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDI 330
           G  SL  L L   +    +  +   +L  L  L L + N +  I +        L+VL+I
Sbjct: 150 GLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEI 207

Query: 331 SNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
           S+   +  +        +L  L+++   L     + +++L  L  L++S N +S
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 8/182 (4%)

Query: 204 HLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSG 263
            +      F   +P+ + T  +    LD+ KN+ +       +    L  L+L+ N  S 
Sbjct: 15  AVLCHRKRFV-AVPEGIPTETR---LLDLGKNRIKTLNQDEFASFPHLEELELNENIVS- 69

Query: 264 ELSAPLLTGCFSLWLLDLSHNSFCGQVSPK-FMNLTQLGWLSLDNNNFSGRISNGFLSSA 322
            +        F+L  L L  N     +    F  L+ L  L +  N     + +      
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDL 127

Query: 323 RSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENN 382
            +L+ L++ +N LV          +SL  LT+ K  L       L +L  L +L +   N
Sbjct: 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187

Query: 383 LS 384
           ++
Sbjct: 188 IN 189

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           +     L+ L+LSY  I+ ++E   + EL  L E+ L G  +    P   + L  L+V  
Sbjct: 244 VRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQ 91
           +S NQL+    SV  S+ +L+ L L  N   
Sbjct: 303 VSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  111 bits (280), Expect = 1e-27
 Identities = 76/381 (19%), Positives = 142/381 (37%), Gaps = 32/381 (8%)

Query: 6   NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQ 65
           N+K     Y  I+ +L+    C   ++       +   G     L N   +      ++ 
Sbjct: 2   NVKPRQPEYKCIDSNLQYD--CVFYDVHIDMQTQDVYFGFEDITLNNQKIVT---FKNST 56

Query: 66  LSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL-EVETENW 124
           +     +++ S   ++ L+L+D   + I    +      ++   L +  N +  +    +
Sbjct: 57  MRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQ--KLYMGFNAIRYLPPHVF 113

Query: 125 LPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRL 183
                L VL L   +L+    G       L +L +S+N L         Q  T L+ L+L
Sbjct: 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQL 172

Query: 184 TNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISS 243
           ++N  T    +  S +  L H ++S N  +         I   +  LD S N     +  
Sbjct: 173 SSNRLT---HVDLSLIPSLFHANVSYNLLS------TLAIPIAVEELDASHNSIN-VVRG 222

Query: 244 SISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWL 303
            +    +L  L L  N  +       L     L  +DLS+N     +   F+ + +L  L
Sbjct: 223 PV--NVELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277

Query: 304 SLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNI 363
            + NN       N +     +L+VLD+S+N L+  +      F  L  L +  N +    
Sbjct: 278 YISNNRLVAL--NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV--- 331

Query: 364 PVQLKNLEALEILDVSENNLS 384
            ++L     L+ L +S N+  
Sbjct: 332 TLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  103 bits (259), Expect = 8e-25
 Identities = 62/360 (17%), Positives = 117/360 (32%), Gaps = 50/360 (13%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
             N K +    + +   L    +   + +  LNL    IE            ++   +  
Sbjct: 44  LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 64  NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETEN 123
           N +    P V  ++  L  L L  N                              +    
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLS--------------------------SLPRGI 136

Query: 124 WLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLR 182
           +  T +L  L + N NL        Q    L++L LS N+L       L+     L    
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI---PSLFHAN 192

Query: 183 LTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSIS 242
           ++ N  +     + +    +  LD S NS    +      +  +L  L +  N    + +
Sbjct: 193 VSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNL--TDT 241

Query: 243 SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGW 302
           + +     L  +DLS N+   ++          L  L +S+N     ++     +  L  
Sbjct: 242 AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKV 299

Query: 303 LSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGN 362
           L L +N+    +          L+ L + +N +V  +   +    +L  LT+S N  + N
Sbjct: 300 LDLSHNHLL-HVERNQ-PQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 99.0 bits (247), Expect = 3e-23
 Identities = 71/333 (21%), Positives = 131/333 (39%), Gaps = 23/333 (6%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L  F+ ++ L+L+   I   ++         + +L +  NAI    P   +N+  L V  
Sbjct: 65  LDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           +  N LS     +  +   L  L +S+N  + I    +    ++L+   L L +N L   
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQN--LQLSSNRLTHV 180

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
             + +P   L   ++    L+     L     ++ LD SHN +       +     +L +
Sbjct: 181 DLSLIP--SLFHANVSYNLLS----TLAIPIAVEELDASHNSIN-VVRGPVNV---ELTI 230

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGS 240
           L+L +N+ T +  L N     L  +D+S N    ++  +    +Q+L  L +S N+   +
Sbjct: 231 LKLQHNNLTDTAWLLN--YPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-A 286

Query: 241 ISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQL 300
           ++     +  L+ LDLS N     +          L  L L HNS    V+ K      L
Sbjct: 287 LNLYGQPIPTLKVLDLSHNHLL-HVE-RNQPQFDRLENLYLDHNSI---VTLKLSTHHTL 341

Query: 301 GWLSLDNNNFSGRISNGFLSSARSLQVLDISNN 333
             L+L +N++          +     V D   +
Sbjct: 342 KNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.0 bits (229), Expect = 7e-21
 Identities = 65/303 (21%), Positives = 105/303 (34%), Gaps = 28/303 (9%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
            A    ++ L + +  I   L       +  L  L LE N +         N  +L    
Sbjct: 89  FAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGI---------------FYLSSLGNHSNL 105
           +S+N L         + TSLQ L LS N    +                 LS+L     +
Sbjct: 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 207

Query: 106 EFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVG 165
           E    S  +N++ V         +L +L L++ NL     +L     L  +DLS+N+L  
Sbjct: 208 EELDAS--HNSINVVRGPVN--VELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELE- 261

Query: 166 SFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQ 225
                      +LE L ++NN    +L L    +  L  LD+S N     + +N      
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FD 318

Query: 226 KLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNS 285
           +L  L +  N      +  +S    L+ L LS N +       L        + D   + 
Sbjct: 319 RLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHC 375

Query: 286 FCG 288
              
Sbjct: 376 KID 378

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  107 bits (269), Expect = 6e-26
 Identities = 66/387 (17%), Positives = 130/387 (33%), Gaps = 32/387 (8%)

Query: 6   NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQ 65
             K   ++ + +             N+ EL+L GN +       L   T+L++  +SSN 
Sbjct: 11  RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 66  LSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWL 125
           L  +L   + SL++L+ LDL++N      Y+  L    ++E   L   NN +   + +  
Sbjct: 70  LYETLD--LESLSTLRTLDLNNN------YVQELLVGPSIET--LHAANNNISRVSCSRG 119

Query: 126 PTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLT 184
                K ++L N  +          +  ++ LDL  N++     A L   +  LE L L 
Sbjct: 120 Q--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 185 NNSFT---GSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSI 241
            N      G +  +      L  LD+SSN     +     +    + ++ +  NK    I
Sbjct: 178 YNFIYDVKGQVVFAK-----LKTLDLSSNKLA-FMGPEFQS-AAGVTWISLRNNKLV-LI 229

Query: 242 SSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLG 301
             ++   ++L   DL  N F         +   +  +  ++  +            T   
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSK--NQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 302 WLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL----VGQIPSWIGNFSSLALLTVSKN 357
                       +   F     +L+  + +          ++     N +    +   K 
Sbjct: 288 LGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346

Query: 358 LLEGNIPVQLKNLEALEILDVSENNLS 384
                I       +A   L+  +  L 
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  100 bits (250), Expect = 2e-23
 Identities = 60/363 (16%), Positives = 125/363 (34%), Gaps = 29/363 (7%)

Query: 29  LKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDN 88
                   +  ++++  L    ++   +K   +S N LS    + +A  T L+ L+LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 89  YFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGFL 147
               ++    L + S L    L L NN +    +  L    ++ LH  N N++  +    
Sbjct: 69  V---LYETLDLESLSTLRT--LDLNNNYV----QELLVGPSIETLHAANNNISRVSCSRG 119

Query: 148 QKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTG-SLQLSNSKLDFLHHLD 206
           Q     K++ L++NK+            ++++ L L  N     +     +  D L HL+
Sbjct: 120 QG---KKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 207 ISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELS 266
           +  N     +   +     KL  LD+S NK    +         + ++ L  N+    + 
Sbjct: 176 LQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 267 APLLTGCFSLWLLDLSHNSF-CGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSL 325
              L    +L   DL  N F CG +   F    ++  ++        +++          
Sbjct: 231 -KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVP 286

Query: 326 QVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGN----IPVQLKNLEALEILDVSEN 381
            +              +     +L     +    +G+    +  + +N      +D  + 
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346

Query: 382 NLS 384
              
Sbjct: 347 QYR 349

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 95.7 bits (238), Expect = 8e-22
 Identities = 63/341 (18%), Positives = 127/341 (37%), Gaps = 47/341 (13%)

Query: 46  LPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNL 105
           + +  +N  R K+  ++ + L  +L S+  S  +++ LDLS N    I            
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI------------ 49

Query: 106 EFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVG 165
                            +  P ++L++L+L +  L      L+    L++LDL++N +  
Sbjct: 50  --------------SAADLAPFTKLELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQE 94

Query: 166 SFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQ 225
                 L     +E L   NN+ +   ++S S+     ++ +++N  T  L         
Sbjct: 95  ------LLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRS 144

Query: 226 KLVYLDMSKNKFEG-SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHN 284
           ++ YLD+  N+ +  + +   +    L  L+L  N                L  LDLS N
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSN 201

Query: 285 SFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV-GQIPSWI 343
                + P+F +   + W+SL NN     I       +++L+  D+  N    G +  + 
Sbjct: 202 KL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 344 GNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
               +  + TV+K  ++       +      +         
Sbjct: 259 SK--NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 93.4 bits (232), Expect = 5e-21
 Identities = 59/388 (15%), Positives = 121/388 (31%), Gaps = 22/388 (5%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L     L+ LDL+   +      Q +    ++  L+   N I        +    +    
Sbjct: 76  LESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISRVSCSRGQGKKNIY--- 126

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           +++N+++          + +QYLDL  N    + +     +   LE   L+L  N +  +
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE--HLNLQYNFIY-D 183

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
            +  +  ++LK L L +  L       Q    +  + L +NKLV       L+ +  LE 
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEK-ALRFSQNLEH 241

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGS 240
             L  N F     L +          ++  +   +L                     E  
Sbjct: 242 FDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDL 299

Query: 241 ISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCF---SLWLLDLSHNSFCGQVSPKFMNL 297
            +     +  L+  + +     G  +  L            +D     +   +    +  
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRK 359

Query: 298 TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN 357
                L         ++SNG  + A     L  +  ++  ++       S L LL     
Sbjct: 360 QAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI--ELQHATEEQSPLQLLRAIVK 417

Query: 358 LL-EGNIPVQLKNLEALEILDVSENNLS 384
              E  +  Q     A+   D+ ++  +
Sbjct: 418 RYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.5 bits (170), Expect = 4e-13
 Identities = 33/195 (16%), Positives = 71/195 (36%), Gaps = 14/195 (7%)

Query: 191 SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKD 250
           ++       +      ++ +S   +   ++      +  LD+S N      ++ ++    
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 251 LRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNF 310
           L  L+LS N          L    +L  LDL++N        + +    +  L   NNN 
Sbjct: 60  LELLNLSSNVLY---ETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI 111

Query: 311 SGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG-NIPVQLKN 369
           S    +      +  + + ++NNK+        G  S +  L +  N ++  N      +
Sbjct: 112 SRVSCSRG----QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 370 LEALEILDVSENNLS 384
            + LE L++  N + 
Sbjct: 168 SDTLEHLNLQYNFIY 182

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  105 bits (262), Expect = 9e-25
 Identities = 64/354 (18%), Positives = 132/354 (37%), Gaps = 46/354 (12%)

Query: 32  LIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQ 91
             +++++    +         L   K+    ++ +     +++ S   ++ L+L+D   +
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88

Query: 92  GIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQ 150
                                     E++T  +     ++ L++    +        Q  
Sbjct: 89  --------------------------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122

Query: 151 HDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSN 210
             L  L L  N L  S P  +  +  KL  L ++NN+       +      L +L +SSN
Sbjct: 123 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181

Query: 211 SFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLL 270
             T  +  +   ++  L + ++S N       S+++    +  LD S N  +  +  P+ 
Sbjct: 182 RLT-HVDLS---LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVN 231

Query: 271 TGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDI 330
                L +L L HN+     +   +N   L  + L  N    +I        + L+ L I
Sbjct: 232 V---ELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYI 285

Query: 331 SNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
           SNN+LV  +  +     +L +L +S N L  ++       + LE L +  N++ 
Sbjct: 286 SNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 99.6 bits (248), Expect = 7e-23
 Identities = 64/380 (16%), Positives = 125/380 (32%), Gaps = 51/380 (13%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
             N K +    + +   L    +   + +  LNL    IE            ++   +  
Sbjct: 50  LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 64  NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETEN 123
           N +    P V  ++  L  L L  N                              +    
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLS--------------------------SLPRGI 142

Query: 124 WLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLR 182
           +  T +L  L + N NL        Q    L++L LS N+L       L+     L    
Sbjct: 143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI---PSLFHAN 198

Query: 183 LTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSIS 242
           ++ N  +     + +    +  LD S NS    +      +  +L  L +  N    + +
Sbjct: 199 VSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNL--TDT 247

Query: 243 SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGW 302
           + +     L  +DLS N+   ++          L  L +S+N     ++     +  L  
Sbjct: 248 AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKV 305

Query: 303 LSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGN 362
           L L +N+    +          L+ L + +N +V  +   +    +L  LT+S N  + N
Sbjct: 306 LDLSHNHLL-HVERNQ-PQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCN 360

Query: 363 -IPVQLKNLEALEILDVSEN 381
            +    +N+    + D  ++
Sbjct: 361 SLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 93.1 bits (231), Expect = 9e-21
 Identities = 71/333 (21%), Positives = 131/333 (39%), Gaps = 23/333 (6%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L  F+ ++ L+L+   I   ++         + +L +  NAI    P   +N+  L V  
Sbjct: 71  LDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           +  N LS     +  +   L  L +S+N  + I    +    ++L+   L L +N L   
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQN--LQLSSNRLTHV 186

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
             + +P   L   ++    L+     L     ++ LD SHN +       +     +L +
Sbjct: 187 DLSLIP--SLFHANVSYNLLS----TLAIPIAVEELDASHNSIN-VVRGPVNV---ELTI 236

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGS 240
           L+L +N+ T +  L N     L  +D+S N    ++  +    +Q+L  L +S N+   +
Sbjct: 237 LKLQHNNLTDTAWLLN--YPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-A 292

Query: 241 ISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQL 300
           ++     +  L+ LDLS N     +          L  L L HNS    V+ K      L
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLL-HVE-RNQPQFDRLENLYLDHNSI---VTLKLSTHHTL 347

Query: 301 GWLSLDNNNFSGRISNGFLSSARSLQVLDISNN 333
             L+L +N++          +     V D   +
Sbjct: 348 KNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 89.2 bits (221), Expect = 2e-19
 Identities = 78/403 (19%), Positives = 135/403 (33%), Gaps = 41/403 (10%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
            A    ++ L + +  I   L       +  L  L LE N +         N  +L    
Sbjct: 95  FAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDN--------YFQGIFYL-------SSLGNHSNL 105
           +S+N L         + TSLQ L LS N            +F+        S+L     +
Sbjct: 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 213

Query: 106 EFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVG 165
           E    S  +N++ V         +L +L L++ NL     +L     L  +DLS+N+L  
Sbjct: 214 EELDAS--HNSINVVRGPVNV--ELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELE- 267

Query: 166 SFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQ 225
                      +LE L ++NN    +L L    +  L  LD+S N     + +N      
Sbjct: 268 KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FD 324

Query: 226 KLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNS 285
           +L  L +  N      +  +S    L+ L LS N +       L        + D   + 
Sbjct: 325 RLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHC 381

Query: 286 FCGQ---------VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV 336
                         S K      L +++L +     + + G  S+  ++  +   ++ + 
Sbjct: 382 KIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYIT 441

Query: 337 GQIPSWIGNFSSLAL----LTVSKNLLEGNIPVQLKNLEALEI 375
            Q    +     L      L      L      Q + L+ L  
Sbjct: 442 QQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHA 484

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 99.3 bits (248), Expect = 9e-24
 Identities = 61/330 (18%), Positives = 122/330 (36%), Gaps = 45/330 (13%)

Query: 46  LPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNL 105
           + +  +N  R K+  ++ + L  +L S+  S  +++ LDLS N    I            
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI------------ 49

Query: 106 EFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVG 165
                            +  P ++L++L+L +  L      L+    L++LDL++N +  
Sbjct: 50  --------------SAADLAPFTKLELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ- 93

Query: 166 SFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQ 225
                 L     +E L   NN+ +   ++S S+     ++ +++N  T  L         
Sbjct: 94  -----ELLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRS 144

Query: 226 KLVYLDMSKNKFEG-SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHN 284
           ++ YLD+  N+ +  + +   +    L  L+L  N                L  LDLS N
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSN 201

Query: 285 SFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV-GQIPSWI 343
                + P+F +   + W+SL NN     I       +++L+  D+  N    G +  + 
Sbjct: 202 KL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 344 GNFSSLALLTVSKNLLEGNIPVQLKNLEAL 373
                +  +             +   +  L
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 99.3 bits (248), Expect = 9e-24
 Identities = 56/284 (19%), Positives = 107/284 (37%), Gaps = 22/284 (7%)

Query: 29  LKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDN 88
                   +  ++++  L    ++   +K   +S N LS    + +A  T L+ L+LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 89  YFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGFL 147
               ++    L + S L    L L NN +    +  L    ++ LH  N N++  +    
Sbjct: 69  ---VLYETLDLESLSTLRT--LDLNNNYV----QELLVGPSIETLHAANNNISRVSCSRG 119

Query: 148 QKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTG-SLQLSNSKLDFLHHLD 206
           Q     K++ L++NK+            ++++ L L  N     +     +  D L HL+
Sbjct: 120 QG---KKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 207 ISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELS 266
           +  N     +   +     KL  LD+S NK    +         + ++ L  N+    + 
Sbjct: 176 LQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 267 APLLTGCFSLWLLDLSHNSF-CGQVSPKFMNLTQLGWLSLDNNN 309
              L    +L   DL  N F CG +   F    ++  ++     
Sbjct: 231 -KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.0 bits (242), Expect = 6e-23
 Identities = 58/259 (22%), Positives = 101/259 (38%), Gaps = 20/259 (7%)

Query: 128 SQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNN 186
           ++ K+  + + +L   L    Q   ++K LDLS N L     A  L   TKLE+L L++N
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSN 68

Query: 187 SFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSIS 246
               +L L +  L  L  LD+++N     L          +  L  + N     +S S  
Sbjct: 69  VLYETLDLES--LSTLRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNIS-RVSCSR- 118

Query: 247 EMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFM-NLTQLGWLSL 305
             +  + + L+ N+ +  L          +  LDL  N        +   +   L  L+L
Sbjct: 119 -GQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 306 DNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPV 365
             N           +    L+ LD+S+NKL   +     + + +  +++  N L   I  
Sbjct: 177 QYNFIYDVKGQVVFAK---LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 366 QLKNLEALEILDVSENNLS 384
            L+  + LE  D+  N   
Sbjct: 232 ALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 81.2 bits (201), Expect = 2e-17
 Identities = 52/303 (17%), Positives = 103/303 (33%), Gaps = 47/303 (15%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
                N+K LDLS   ++  +    +     L  LNL  N +   L   L++L+ L+   
Sbjct: 30  RQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLD 86

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           +++N +       +    S++ L  ++N    +    S       +   + L NN     
Sbjct: 87  LNNNYV-----QELLVGPSIETLHAANNNISRV----SCSRGQGKKN--IYLANN----- 130

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
                   ++ +L       +   G   +   ++ LDL  N++     A L   +  LE 
Sbjct: 131 --------KITMLR------DLDEGCRSR---VQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 181 LRLTNNSFT---GSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKF 237
           L L  N      G +  +      L  LD+SSN     +     +    + ++ +  NK 
Sbjct: 174 LNLQYNFIYDVKGQVVFAK-----LKTLDLSSNKLA-FMGPEFQS-AAGVTWISLRNNKL 226

Query: 238 EGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNL 297
              I  ++   ++L   DL  N F         +    +  +           + +   +
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 298 TQL 300
             L
Sbjct: 286 PTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 45/263 (17%), Positives = 89/263 (33%), Gaps = 23/263 (8%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L     L+ LDL+   +      Q +    ++  L+   N I        +    +    
Sbjct: 76  LESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISRVSCSRGQGKKNIY--- 126

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           +++N+++          + +QYLDL  N    + +     +   LE   L+L  N +  +
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH--LNLQYNFIY-D 183

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
            +  +  ++LK L L +  L       Q    +  + L +NKLV       L+ +  LE 
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEK-ALRFSQNLEH 241

Query: 181 LRLTNNSFT-GSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEG 239
             L  N F  G+L+   SK   +  +   +        +   T+             +  
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG--------HYGA 293

Query: 240 SISSSISEMKDLRFLDLSRNQFS 262
                +      R + L  +   
Sbjct: 294 YCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 71.9 bits (177), Expect = 3e-14
 Identities = 35/195 (17%), Positives = 73/195 (37%), Gaps = 14/195 (7%)

Query: 191 SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKD 250
           ++       +      ++ +S   +   ++      +  LD+S N      ++ ++    
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 251 LRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNF 310
           L  L+LS N          L    +L  LDL++N        + +    +  L   NNN 
Sbjct: 60  LELLNLSSNVLY---ETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI 111

Query: 311 SGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG-NIPVQLKN 369
           S R+S       +  + + ++NNK+        G  S +  L +  N ++  N      +
Sbjct: 112 S-RVSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 370 LEALEILDVSENNLS 384
            + LE L++  N + 
Sbjct: 168 SDTLEHLNLQYNFIY 182

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.4 bits (243), Expect = 6e-23
 Identities = 63/336 (18%), Positives = 106/336 (31%), Gaps = 61/336 (18%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
             +   LDL    I   +++     LKNL  L L  N I    P     L +L+   +S 
Sbjct: 51  PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109

Query: 64  NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLE---VE 120
           NQL   LP       +LQ L + +N    +   S     + +   ++ L  N L+   +E
Sbjct: 110 NQLK-ELPE--KMPKTLQELRVHENEITKVRK-SVFNGLNQMI--VVELGTNPLKSSGIE 163

Query: 121 TENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLE 179
              +    +L  + + + N+     G       L  L L  NK+     A  L+    L 
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKI-TKVDAASLKGLNNLA 219

Query: 180 VLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEG 239
            L L+ NS +                 + + S               L  L ++ NK   
Sbjct: 220 KLGLSFNSIS----------------AVDNGSLAN---------TPHLRELHLNNNKLV- 253

Query: 240 SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQ 299
            +   +++ K ++ + L  N  S                  +  N FC            
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNIS-----------------AIGSNDFCPPGY--NTKKAS 294

Query: 300 LGWLSLDNNNFS-GRISNGFLSSARSLQVLDISNNK 334
              +SL +N      I             + + N K
Sbjct: 295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.5 bits (207), Expect = 4e-18
 Identities = 55/270 (20%), Positives = 107/270 (39%), Gaps = 23/270 (8%)

Query: 125 LPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRL 183
           LP     +L L+N  +     G  +   +L +L L +NK+             KLE L L
Sbjct: 50  LPPD-TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYL 107

Query: 184 TNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSI-- 241
           + N      +L       L  L +  N  T ++ +++   L +++ +++  N  + S   
Sbjct: 108 SKNQLK---ELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIE 163

Query: 242 SSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK-FMNLTQL 300
           + +   MK L ++ ++    +  +   L     SL  L L  N    +V       L  L
Sbjct: 164 NGAFQGMKKLSYIRIADTNIT-TIPQGLPP---SLTELHLDGNKI-TKVDAASLKGLNNL 218

Query: 301 GWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE 360
             L L  N+ S  + NG L++   L+ L ++NNKLV ++P  + +   + ++ +  N + 
Sbjct: 219 AKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

Query: 361 G------NIPVQLKNLEALEILDVSENNLS 384
                    P       +   + +  N + 
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 8/97 (8%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L    NL  L LS+  I+ +++N  +    +L EL+L  N +   +P  L +   ++V  
Sbjct: 212 LKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVY 269

Query: 61  ISSNQLSG------SLPSVIASLTSLQYLDLSDNYFQ 91
           + +N +S         P       S   + L  N  Q
Sbjct: 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 96.7 bits (241), Expect = 3e-22
 Identities = 76/361 (21%), Positives = 128/361 (35%), Gaps = 39/361 (10%)

Query: 6   NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQ-CLKNLTRLKVFGISSN 64
           ++  +DLS   I   L       L++L  L +E       +     + L+ L +  +  N
Sbjct: 31  HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 65  QLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLS-SLGNHSNLEFFMLSLVNNTLEVETEN 123
           Q           L +L+ L L+     G           ++LE  ML L +N ++     
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE--MLVLRDNNIKKIQPA 147

Query: 124 WLPTS--QLKVLHLRN----CNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWL------ 171
               +  +  VL L            L   Q +H    L LS   L      WL      
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH-FTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 172 -LQHNTKLEVLRLTNNSFTGSLQ------LSNSKLDFLHH-------LDISSNSFTGRLP 217
               NT +  L L+ N F  S+       ++ +K+  L               +F     
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK-DPD 265

Query: 218 QNMSTILQ--KLVYLDMSKNKFEGSISSSI-SEMKDLRFLDLSRNQFSGELSAPLLTGCF 274
                 L+   +   D+SK+K   ++  S+ S   DL  L L++N+ + ++      G  
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLT 323

Query: 275 SLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNK 334
            L  L+LS N      S  F NL +L  L L  N+    + +       +L+ L +  N+
Sbjct: 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQ 382

Query: 335 L 335
           L
Sbjct: 383 L 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 89.4 bits (222), Expect = 1e-19
 Identities = 74/387 (19%), Positives = 122/387 (31%), Gaps = 66/387 (17%)

Query: 31  NLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPS-VIASLTSLQYLDLSDNY 89
           ++  ++L  N+I          L  L+   +        + +     L+SL  L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 90  FQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTL---GF 146
           F                     L               + L+VL L  CNL+G +    F
Sbjct: 91  FL-------------------QLETGAFN-------GLANLEVLTLTQCNLDGAVLSGNF 124

Query: 147 LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFT----------GSLQLSN 196
            +    L+ L L  N +    PA    +  +  VL LT N                  + 
Sbjct: 125 FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184

Query: 197 SKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDL 256
            +L  +   D++          N       +  LD+S N F+ S++    +      +  
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFK-NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243

Query: 257 SRNQFSGELSAPLLTGCF--------------SLWLLDLSHNSFCGQVSPK-FMNLTQLG 301
                S  + +      F               +   DLS +     +    F + T L 
Sbjct: 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI-FALLKSVFSHFTDLE 302

Query: 302 WLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTV---SKNL 358
            L+L  N  + +I +        L  L++S N L G I S    F +L  L V   S N 
Sbjct: 303 QLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDS--RMFENLDKLEVLDLSYNH 358

Query: 359 LEGNIPVQL-KNLEALEILDVSENNLS 384
           +   +  Q    L  L+ L +  N L 
Sbjct: 359 IR-ALGDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 5/135 (3%)

Query: 222 TILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDL 281
            +   + Y+D+S N       +S S ++DL+FL + +      +      G  SL +L L
Sbjct: 27  ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86

Query: 282 SHNSFCGQVSPK-FMNLTQLGWLSLDNNNF-SGRISNGFLSSARSLQVLDISNNKLVGQI 339
            +N F  Q+    F  L  L  L+L   N     +S  F     SL++L + +N +    
Sbjct: 87  DYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 340 PSWIGNFSSLALLTV 354
           P+    F ++    V
Sbjct: 146 PA--SFFLNMRRFHV 158

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.7 bits (111), Expect = 8e-06
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 2   AKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGI 61
           + F +L+ L L+   IN  +++     L +L++LNL  N +     +  +NL +L+V  +
Sbjct: 296 SHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354

Query: 62  SSNQLSGSLPSVIASLTSLQYLDLSDN 88
           S N +          L +L+ L L  N
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTN 381

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.0 bits (237), Expect = 4e-22
 Identities = 58/337 (17%), Positives = 106/337 (31%), Gaps = 29/337 (8%)

Query: 48  QCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEF 107
                   L   G  S  L      V++        D +  +           N +N + 
Sbjct: 9   HHSSGRENLYFQG--STALR-PYHDVLSQWQRHYNADRNRWHS-----AWRQANSNNPQI 60

Query: 108 FMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLN---GTLGFLQKQHDLKSLDLSHNKLV 164
              +        +            L LR+  L         L     L+ + +    L+
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSH---LQHMTIDAAGLM 117

Query: 165 GSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI- 223
              P  + Q    LE L L  N    +L  S + L+ L  L I +      LP+ +++  
Sbjct: 118 -ELPDTMQQF-AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 224 -------LQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSL 276
                  L  L  L +       S+ +SI+ +++L+ L +  +  S    A  +     L
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA--IHHLPKL 231

Query: 277 WLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV 336
             LDL   +      P F     L  L L + +    +    +     L+ LD+     +
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNL 290

Query: 337 GQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEAL 373
            ++PS I    +  ++ V  +L       +     A 
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 34/242 (14%), Positives = 72/242 (29%), Gaps = 34/242 (14%)

Query: 170 WLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTIL----- 224
               H++  E L    ++         S+    ++ D +      R   + +  +     
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTG 65

Query: 225 ---------------QKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPL 269
                             V L++               +  L+ + +       EL    
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP-DT 122

Query: 270 LTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNN--------FSGRISNGFLSS 321
           +     L  L L+ N     +     +L +L  LS+             +   ++G    
Sbjct: 123 MQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 322 ARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSEN 381
             +LQ L +    +   +P+ I N  +L  L +  + L   +   + +L  LE LD+   
Sbjct: 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGC 239

Query: 382 NL 383
             
Sbjct: 240 TA 241

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 5   KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSN 64
            NL++L L +TGI  SL    I  L+NL  L +  + +   L   + +L +L+   +   
Sbjct: 183 VNLQSLRLEWTGIR-SLPA-SIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGC 239

Query: 65  QLSGSLPSVIASLTSLQYLDLSDN 88
               + P +      L+ L L D 
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 1/88 (1%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           +     L+ LDL       +           L  L L+  +    LP  +  LT+L+   
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDN 88
           +        LPS+IA L +   + +  +
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILVPPH 311

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.5 bits (233), Expect = 1e-21
 Identities = 64/334 (19%), Positives = 102/334 (30%), Gaps = 58/334 (17%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
             +   LDL    I+  L       L++L  L L  N I     +    L +L+   IS 
Sbjct: 53  SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111

Query: 64  NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVET-- 121
           N L   +P      +SL  L + DN  + +          N+    + +  N LE     
Sbjct: 112 NHLV-EIPP--NLPSSLVELRIHDNRIRKVPK-GVFSGLRNMN--CIEMGGNPLENSGFE 165

Query: 122 ENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVL 181
                  +L  L +    L G    L +   L  L L HNK+  +     L   +KL  L
Sbjct: 166 PGAFDGLKLNYLRISEAKLTGIPKDLPE--TLNELHLDHNKIQ-AIELEDLLRYSKLYRL 222

Query: 182 RLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSI 241
            L +N                    I + S +          L  L  L +  NK    +
Sbjct: 223 GLGHNQIR----------------MIENGSLSF---------LPTLRELHLDNNKLS-RV 256

Query: 242 SSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLG 301
            + + ++K L+ + L  N  +                  +  N FC       +      
Sbjct: 257 PAGLPDLKLLQVVYLHTNNIT-----------------KVGVNDFCP--VGFGVKRAYYN 297

Query: 302 WLSLDNNNFS-GRISNGFLSSARSLQVLDISNNK 334
            +SL NN      +             +   N K
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.4 bits (199), Expect = 4e-17
 Identities = 50/236 (21%), Positives = 88/236 (37%), Gaps = 16/236 (6%)

Query: 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS 211
           D   LDL +N +         +    L  L L NN  +   + + S L  L  L IS N 
Sbjct: 55  DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 212 FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLT 271
               +P N+      LV L +  N+         S ++++  +++  N      ++    
Sbjct: 114 LV-EIPPNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE---NSGFEP 166

Query: 272 GCF---SLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVL 328
           G F    L  L +S       +         L  L LD+N     I    L     L  L
Sbjct: 167 GAFDGLKLNYLRISEAKL-TGIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRL 222

Query: 329 DISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
            + +N++       +    +L  L +  N L   +P  L +L+ L+++ +  NN++
Sbjct: 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 49/271 (18%), Positives = 93/271 (34%), Gaps = 31/271 (11%)

Query: 78  TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL-EVETENWLPTSQLKVLHLR 136
                LDL +N    +          +L    L LVNN + ++  + + P  +L+ L++ 
Sbjct: 54  PDTTLLDLQNNDISEL-RKDDFKGLQHLYA--LVLVNNKISKIHEKAFSPLRKLQKLYIS 110

Query: 137 NCNL----NGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSL 192
             +L                L  L +  N++    P  +      +  + +  N    + 
Sbjct: 111 KNHLVEIPPNLP------SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLE-NS 162

Query: 193 QLSNSKLD--FLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKD 250
                  D   L++L IS    T  +P+++    + L  L +  NK +      +     
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSK 218

Query: 251 LRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNF 310
           L  L L  NQ    +    L+   +L  L L +N    +V     +L  L  + L  NN 
Sbjct: 219 LYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNI 276

Query: 311 SGRISNG------FLSSARSLQVLDISNNKL 335
           + ++         F         + + NN +
Sbjct: 277 T-KVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.6 bits (228), Expect = 4e-21
 Identities = 58/233 (24%), Positives = 90/233 (38%), Gaps = 25/233 (10%)

Query: 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS 211
               L+L  NKL  S P  +    T+L  L L++N               L      S S
Sbjct: 29  SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNG--------------LSFKGCCSQS 73

Query: 212 FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLT 271
             G            L YLD+S N    ++SS+   ++ L  LD   +         +  
Sbjct: 74  DFG---------TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 272 GCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDIS 331
              +L  LD+SH       +  F  L+ L  L +  N+F         +  R+L  LD+S
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 332 NNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
             +L    P+   + SSL +L +S N          K L +L++LD S N++ 
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.1 bits (219), Expect = 7e-20
 Identities = 54/286 (18%), Positives = 90/286 (31%), Gaps = 55/286 (19%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIE--GPLPQCLKNLTRLKVFGI 61
             +   L+L    +  SL +    +L  L +L+L  N +   G   Q     T LK   +
Sbjct: 27  PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 62  SSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVET 121
           S N +  ++ S    L  L++LD   +  + +   S   +  NL +              
Sbjct: 86  SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY-------------- 130

Query: 122 ENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
                      L + + +      G       L+ L ++ N    +F   +      L  
Sbjct: 131 -----------LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGS 240
           L L+                      +S  +F           L  L  L+MS N F   
Sbjct: 180 LDLSQCQLE----------------QLSPTAFNS---------LSSLQVLNMSHNNFFSL 214

Query: 241 ISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF 286
            +     +  L+ LD S N         L     SL  L+L+ N F
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.8 bits (218), Expect = 8e-20
 Identities = 61/278 (21%), Positives = 101/278 (36%), Gaps = 36/278 (12%)

Query: 62  SSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNN---TLE 118
           +S  L+ S+P+ I   +S   L+L  N  Q +         + L    LSL +N      
Sbjct: 15  NSKGLT-SVPTGI--PSSATRLELESNKLQSL-PHGVFDKLTQLTK--LSLSSNGLSFKG 68

Query: 119 VETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKL 178
             +++   T+ LK L L    +            L+ LD  H+ L       +      L
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128

Query: 179 EVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFE 238
             L +++                       +  F G         L  L  L M+ N F+
Sbjct: 129 IYLDISHTHTR----------------VAFNGIFNG---------LSSLEVLKMAGNSFQ 163

Query: 239 GSISSSI-SEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNL 297
            +    I +E+++L FLDLS+ Q   +LS        SL +L++SHN+F    +  +  L
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222

Query: 298 TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL 335
             L  L    N+              SL  L+++ N  
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.5 bits (207), Expect = 3e-18
 Identities = 59/262 (22%), Positives = 91/262 (34%), Gaps = 32/262 (12%)

Query: 54  TRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLS-SLGNHSNLEFFMLSL 112
           +      + SN+L      V   LT L  L LS N        S S    ++L+   L L
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK--YLDL 85

Query: 113 VNNTLEVETENWLPTSQLKVLHLRNCNLN--GTLGFLQKQHDLKSLDLSHNKLVGSFPAW 170
             N +   + N+L   QL+ L  ++ NL             +L  LD+SH          
Sbjct: 86  SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNG 144

Query: 171 LLQHNTKLEVLRLTNNSFTGSLQLSN-SKLDFLHHLDISSNSFTGRLPQNMSTILQKLVY 229
           +    + LEVL++  NSF  +      ++L  L  LD+S      +L       L  L  
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQV 203

Query: 230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289
           L+MS N F    +     +  L+ LD S N                              
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-----------------TSKKQELQH- 245

Query: 290 VSPKFMNLTQLGWLSLDNNNFS 311
                   + L +L+L  N+F+
Sbjct: 246 ------FPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 49/240 (20%), Positives = 84/240 (35%), Gaps = 30/240 (12%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
             K   L  L LS  G++                        +G   Q     T LK   
Sbjct: 48  FDKLTQLTKLSLSSNGLS-----------------------FKGCCSQSDFGTTSLKYLD 84

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           +S N +  ++ S    L  L++LD   +  + +   S   +  NL +  L + +    V 
Sbjct: 85  LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY--LDISHTHTRVA 141

Query: 121 TENWL-PTSQLKVLHLRNCNLNGTL--GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTK 177
                   S L+VL +   +           +  +L  LDLS  +L            + 
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSS 200

Query: 178 LEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKF 237
           L+VL +++N+F          L+ L  LD S N       Q +      L +L++++N F
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 2/92 (2%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
             + +NL  LDLS   +   L       L +L  LN+  N          K L  L+V  
Sbjct: 171 FTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229

Query: 61  ISSNQLSGSLPSVIASL-TSLQYLDLSDNYFQ 91
            S N +  S    +    +SL +L+L+ N F 
Sbjct: 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.4 bits (232), Expect = 6e-21
 Identities = 82/398 (20%), Positives = 146/398 (36%), Gaps = 27/398 (6%)

Query: 5   KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEG-PLPQCLKNLTRLKVFGISS 63
           + L+ LDLS+      L         NL  L+L  NA +  P+ +   N+++LK  G+S+
Sbjct: 69  QELEYLDLSHN----KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST 124

Query: 64  NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETEN 123
             L  S    IA L   + L +    +        L + +     ++   N       + 
Sbjct: 125 THLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV 184

Query: 124 WLPTSQLKVLHLRNCNLNGT--------LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQH- 174
            + T     L    C L           L  LQ    L +L L++ +   +    +LQ  
Sbjct: 185 SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244

Query: 175 -NTKLEVLRLTNNSFTG-----SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLV 228
            +T +    ++N    G         S + L  L    + S+ F       +  I   + 
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF-PQSYIYEIFSNMN 303

Query: 229 YLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF-- 286
             + + +          S++     LD S N  + +           L  L L  N    
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKE 362

Query: 287 CGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNF 346
             +++     +  L  L +  N+ S     G  S  +SL  L++S+N L   I   +   
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--P 420

Query: 347 SSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
             + +L +  N ++ +IP Q+  LEAL+ L+V+ N L 
Sbjct: 421 PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 90.7 bits (225), Expect = 4e-20
 Identities = 84/426 (19%), Positives = 135/426 (31%), Gaps = 58/426 (13%)

Query: 5   KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSN 64
           +    L++S   I+  L    I  L  L  L +  N I+       K    L+   +S N
Sbjct: 21  QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 65  QLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEF----------------- 107
           +L   +        +L++LDLS N F  +      GN S L+F                 
Sbjct: 80  KLV-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 108 ------FMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHN 161
                  +L L     E E    L     + LH+     N    F+         +L  +
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF-PTNKEFHFILDVSVKTVANLELS 195

Query: 162 KLVGSFPAWLLQHNTK---------------LEVLRLTNNSFTGSLQLSNSKLDFLHHLD 206
            +          +                  L  +  T NSF   LQL       + +  
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT--TVWYFS 253

Query: 207 ISSNSFTG----RLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFS 262
           IS+    G    R      T L+ L    +  + F    S       ++   + + +  +
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG-T 312

Query: 263 GELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSG-RISNGFLSS 321
             +     +       LD S+N     V     +LT+L  L L  N            + 
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

Query: 322 ARSLQVLDISNNKLVGQIPSWIGNFSSLALLTV---SKNLLEGNIPVQLKNLEALEILDV 378
            +SLQ LDIS N +        G+ S    L     S N+L   I   L     +++LD+
Sbjct: 373 MKSLQQLDISQNSVSYDEKK--GDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDL 428

Query: 379 SENNLS 384
             N + 
Sbjct: 429 HSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 74.9 bits (184), Expect = 7e-15
 Identities = 66/369 (17%), Positives = 130/369 (35%), Gaps = 41/369 (11%)

Query: 3   KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNL--TRLKVFG 60
               LK L LS T +  S          + + L L     E   P+ L++     L +  
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDN--------YFQGIFYLSSLGNHSNLEFFMLSL 112
            ++ +    L   + ++ +L+  ++           +   +  L +    SNL    +  
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

Query: 113 VNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQ---HDLKSLDLSH--NKLVGSF 167
             N+  +     +  + +    + N  L G L F         LK+L +    + + G  
Sbjct: 233 TWNSF-IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP 291

Query: 168 PAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKL 227
            +++ +  + + +   T +       L  SK+    HLD S+N  T          L +L
Sbjct: 292 QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTEL 350

Query: 228 VYLDMSKNKFE--GSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNS 285
             L +  N+ +    I+   ++MK L+ LD+S+N  S +      +   SL  L++S N 
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

Query: 286 FCGQVSPKF---------------------MNLTQLGWLSLDNNNFSGRISNGFLSSARS 324
               +                         + L  L  L++ +N     + +G      S
Sbjct: 411 LTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTS 469

Query: 325 LQVLDISNN 333
           LQ + +  N
Sbjct: 470 LQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.2 bits (151), Expect = 8e-11
 Identities = 38/212 (17%), Positives = 80/212 (37%), Gaps = 6/212 (2%)

Query: 4   FKNLKALDLSYTGIN--GSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGI 61
             +LKAL +     +  G  ++       N+   N   +        C   ++       
Sbjct: 272 GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331

Query: 62  SSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSL-GNHSNLEFFMLSLVNNTLEVE 120
           S+N L+ ++      LT L+ L L  N  + +  ++ +     +L+   +S  + + + +
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
             +   T  L  L++ +  L     F      +K LDL  NK+  S P  ++     L+ 
Sbjct: 392 KGDCSWTKSLLSLNMSSNILT-DTIFRCLPPRIKVLDLHSNKIK-SIPKQVV-KLEALQE 448

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSF 212
           L + +N           +L  L  + + +N +
Sbjct: 449 LNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.3 bits (227), Expect = 2e-20
 Identities = 53/280 (18%), Positives = 89/280 (31%), Gaps = 41/280 (14%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
             N + L+L    I   ++      L++L  L L  N I          L  L    +  
Sbjct: 63  STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121

Query: 64  NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETEN 123
           N+L+         L+ L+ L L +N  + I                           +  
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESI--------------------------PSYA 155

Query: 124 WLPTSQLKVLHLRNCNLNGTL--GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVL 181
           +     L+ L L        +  G  +   +L+ L+L+   L    P   L    KL+ L
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDEL 212

Query: 182 RLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSI 241
            L+ N  +     S   L  L  L +  +     + +N    LQ LV ++++ N      
Sbjct: 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLP 271

Query: 242 SSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDL 281
               + +  L  + L  N        P    C  LWL   
Sbjct: 272 HDLFTPLHHLERIHLHHN--------PWNCNCDILWLSWW 303

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 90.6 bits (225), Expect = 3e-20
 Identities = 53/232 (22%), Positives = 91/232 (39%), Gaps = 5/232 (2%)

Query: 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS 211
           + + L+L  N++         +H   LE+L+L+ N        + + L  L+ L++  N 
Sbjct: 65  NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 212 FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLT 271
            T  +P      L KL  L +  N  E   S + + +  LR LDL   +    +S     
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 272 GCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDIS 331
           G  +L  L+L+  +   +  P    L +L  L L  N+ S  I  G       LQ L + 
Sbjct: 183 GLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMI 239

Query: 332 NNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383
            +++     +   N  SL  + ++ N L          L  LE + +  N  
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.1 bits (151), Expect = 9e-11
 Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 13/141 (9%)

Query: 250 DLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK-FMNLTQLGWLSLDNN 308
           + R L+L  NQ    +          L +L LS N     +    F  L  L  L L +N
Sbjct: 65  NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDN 122

Query: 309 NFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTV----SKNLLEGNIP 364
             +  I NG       L+ L + NN +   IPS    F+ +  L          L   I 
Sbjct: 123 RLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPS--YAFNRIPSLRRLDLGELKRLS-YIS 177

Query: 365 VQ-LKNLEALEILDVSENNLS 384
               + L  L  L+++  NL 
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLR 198

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.3 bits (227), Expect = 2e-20
 Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 5/232 (2%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
             N + L+L    I   ++      L +L  L L  N+I          L  L    +  
Sbjct: 74  PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132

Query: 64  NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETEN 123
           N L+         L+ L+ L L +N  + I    +     +L    L  +     +    
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 124 WLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRL 183
           +     LK L+L  CN+   +  L     L+ L++S N              + L+ L +
Sbjct: 192 FEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWV 249

Query: 184 TNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
            N+  +   + +   L  L  L+++ N+ +  LP ++ T L+ LV L +  N
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 88.7 bits (220), Expect = 2e-19
 Identities = 51/236 (21%), Positives = 81/236 (34%), Gaps = 10/236 (4%)

Query: 150 QHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISS 209
            +    +  +   L    P  +    +    L L  N+       +   L  L  L +  
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR 108

Query: 210 NSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPL 269
           NS   ++       L  L  L++  N      S +   +  LR L L  N     + +  
Sbjct: 109 NSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

Query: 270 LTGCFSLWLLDLSHNSFCGQVSPK-FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVL 328
                SL  LDL        +S   F  L  L +L+L   N    + N  L+    L+ L
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN--LTPLVGLEEL 223

Query: 329 DISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
           ++S N      P      SSL  L V  + +          L +L  L+++ NNLS
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.3 bits (214), Expect = 1e-18
 Identities = 51/231 (22%), Positives = 94/231 (40%), Gaps = 17/231 (7%)

Query: 110 LSLVNNTL-EVETENWLPTSQLKVLHLRNCNL----NGTLGFLQKQHDLKSLDLSHNKLV 164
           L+L+ N +  ++ + +     L+VL L   ++     G    L     L +L+L  N L 
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS---LNTLELFDNWLT 136

Query: 165 GSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSN-SKLDFLHHLDISSNSFTGRLPQNMSTI 223
              P+   ++ +KL  L L NN    S+     +++  L  LD+        + +     
Sbjct: 137 -VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 224 LQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSH 283
           L  L YL++           +++ +  L  L++S N F  E+      G  SL  L + +
Sbjct: 195 LFNLKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMN 251

Query: 284 NSFCGQVSPK-FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNN 333
           +     +    F  L  L  L+L +NN S  + +   +  R L  L + +N
Sbjct: 252 SQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 52/233 (22%), Positives = 84/233 (36%), Gaps = 10/233 (4%)

Query: 128 SQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNN 186
           S  + L+L   N+        +  H L+ L L  N +              L  L L +N
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDN 133

Query: 187 SFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSI- 245
             T     +   L  L  L + +N     +P      +  L+ LD+ + K    IS    
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 246 SEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK-FMNLTQLGWLS 304
             + +L++L+L           P LT    L  L++S N F  ++ P  F  L+ L  L 
Sbjct: 193 EGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHF-PEIRPGSFHGLSSLKKLW 248

Query: 305 LDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN 357
           + N+  S  I         SL  L++++N L             L  L +  N
Sbjct: 249 VMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 89.6 bits (223), Expect = 8e-20
 Identities = 70/404 (17%), Positives = 127/404 (31%), Gaps = 72/404 (17%)

Query: 30  KNLIELNLEGNAI-EGPLPQCLKNLTRLKVFGISSNQLS----GSLPSVIASLTSLQYLD 84
            ++  L+++   + +    + L  L + +V  +    L+      + S +    +L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 85  LSDNYFQ--GIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG 142
           L  N     G+  +             L   +  ++              L L+NC L G
Sbjct: 63  LRSNELGDVGVHCVLQ----------GLQTPSCKIQ-------------KLSLQNCCLTG 99

Query: 143 T-----LGFLQKQHDLKSLDLSHNKL----VGSFPAWLLQHNTKLEVLRLTNNSFT--GS 191
                    L+    L+ L LS N L    +      LL    +LE L+L   S +    
Sbjct: 100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159

Query: 192 LQLSN--SKLDFLHHLDISSNSFTGRLPQNMSTILQ----KLVYLDMSKNKFE----GSI 241
             L++          L +S+N       + +   L+    +L  L +            +
Sbjct: 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219

Query: 242 SSSISEMKDLRFLDLSRNQFSGE----LSAPLLTGCFSLWLLDLSHNSF----CGQVSPK 293
              ++    LR L L  N+        L   LL     L  L +         CG +   
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279

Query: 294 FMNLTQLGWLSLDNNNFSG----RISNGFLSSARSLQVLDISNNKL----VGQIPSWIGN 345
                 L  LSL  N         +    L     L+ L + +            S +  
Sbjct: 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339

Query: 346 FSSLALLTVSKNLLEGNIPVQL-----KNLEALEILDVSENNLS 384
              L  L +S N LE     +L     +    L +L +++ ++S
Sbjct: 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 87.3 bits (217), Expect = 6e-19
 Identities = 85/432 (19%), Positives = 139/432 (32%), Gaps = 92/432 (21%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICEL----KNLIELNLEGNAIEGP----LPQCLKN 52
           L   +  + + L   G+      + I         L ELNL  N +       + Q L+ 
Sbjct: 24  LPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82

Query: 53  L-TRLKVFGISSNQLS----GSLPSVIASLTSLQYLDLSDNYFQ--GIFYLSSLGNHSNL 105
              +++   + +  L+    G L S + +L +LQ L LSDN     G+  L         
Sbjct: 83  PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ- 141

Query: 106 EFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGT----LGF-LQKQHDLKSLDLSH 160
                                  +L+ L L  C+L+      L   L+ + D K L +S+
Sbjct: 142 ----------------------CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 161 NKL----VGSFPAWLLQHNTKLEVLRLTNNSFT--GSLQLSN--SKLDFLHHLDISSNSF 212
           N +    V      L     +LE L+L +   T      L    +    L  L + SN  
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 213 TGR----LPQNMSTILQKLVYLDMSKNKFE----GSISSSISEMKDLRFLDLSRNQFSGE 264
                  L   +     +L  L + +        G +   +   + L+ L L+ N+   E
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 265 ----LSAPLLTGCFSLWLLDLSHNSF----CGQVSPKFMNLTQLGWLSLDNNNFSG---- 312
               L   LL     L  L +   SF    C   S        L  L + NN        
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359

Query: 313 RISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEA 372
            +  G       L+VL +++          + + S  +L               L    +
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCD--------VSDSSCSSLAAT------------LLANHS 399

Query: 373 LEILDVSENNLS 384
           L  LD+S N L 
Sbjct: 400 LRELDLSNNCLG 411

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.1 bits (216), Expect = 2e-19
 Identities = 50/266 (18%), Positives = 104/266 (39%), Gaps = 15/266 (5%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
            + +K+LDLS   I   + N  +    NL  L L  N I         +L  L+   +S 
Sbjct: 51  TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 64  NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETEN 123
           N LS    S    L+SL +L+L  N ++ +   S   + + L+   +  ++   +++ ++
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 124 WLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLR 182
           +   + L+ L +   +L       L+   ++  L L   + +       +   + +E L 
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLE 228

Query: 183 LTNN--------SFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSK 234
           L +           +     S  K     ++ I+  S        +   +  L+ L+ S+
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ--VMKLLNQISGLLELEFSR 286

Query: 235 NKFEGSISSSI-SEMKDLRFLDLSRN 259
           N+ + S+   I   +  L+ + L  N
Sbjct: 287 NQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 1e-16
 Identities = 60/287 (20%), Positives = 105/287 (36%), Gaps = 25/287 (8%)

Query: 62  SSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL-EVE 120
           SS  L+ S+PS +    +++ LDLS+N    I   S L    NL+   L L +N +  +E
Sbjct: 39  SSGSLN-SIPSGL--TEAVKSLDLSNNRITYI-SNSDLQRCVNLQA--LVLTSNGINTIE 92

Query: 121 TENWLPTSQLKVLHLRNCNL----NGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNT 176
            +++     L+ L L    L    +     L     L  L+L  N         L  H T
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS---LTFLNLLGNPYKTLGETSLFSHLT 149

Query: 177 KLEVLRLTNNSFTGSLQLSN-SKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
           KL++LR+ N      +Q  + + L FL  L+I ++             +Q + +L +   
Sbjct: 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMK 208

Query: 236 KFEGSISSSISEMKDLRFLDLSRNQFSG-------ELSAPLLTGCFSLWLLDLSHNSFCG 288
           +    +   +     +  L+L                    L   F+   + ++  S   
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-F 267

Query: 289 QVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL 335
           QV      ++ L  L    N     + +G      SLQ + +  N  
Sbjct: 268 QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 61.7 bits (150), Expect = 8e-11
 Identities = 34/185 (18%), Positives = 69/185 (37%), Gaps = 19/185 (10%)

Query: 5   KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSN 64
             L+ L +        ++ +    L  L EL ++ + ++   P+ LK++  +    +   
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208

Query: 65  QLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENW 124
           Q    L   +   +S++ L+L D      F+ S L   S  E   L              
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLDT-FHFSEL---STGETNSL-------------- 250

Query: 125 LPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLT 184
           +     + + + + +L   +  L +   L  L+ S N+L  S P  +    T L+ + L 
Sbjct: 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLH 309

Query: 185 NNSFT 189
            N + 
Sbjct: 310 TNPWD 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.7 bits (212), Expect = 3e-18
 Identities = 61/342 (17%), Positives = 98/342 (28%), Gaps = 57/342 (16%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
             ++  L +    +  SL          L  L + GN +   LP     L  L +F    
Sbjct: 60  PAHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPL 113

Query: 64  NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETEN 123
             L        A  + L  L +  N    +                LS+ +N L      
Sbjct: 114 THLP-------ALPSGLCKLWIFGNQLTSLP--VLPPGLQE-----LSVSDNQLASLPAL 159

Query: 124 WLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRL 183
               S+L  L   N  L            L+ L +S N+L  S P       ++L  L  
Sbjct: 160 P---SELCKLWAYNNQLTSLPMLPSG---LQELSVSDNQLA-SLPTLP----SELYKLWA 208

Query: 184 TNNSFTG---------SLQLSNSKLDF-------LHHLDISSNSFTGRLPQNMSTILQKL 227
            NN  T           L +S ++L         L  L +S N  T  LP         L
Sbjct: 209 YNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPML----PSGL 263

Query: 228 VYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFC 287
           + L + +N+    +  S+  +     ++L  N     LS   L     +           
Sbjct: 264 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP----LSERTLQALREITSAPGYSGPII 318

Query: 288 GQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLD 329
                      +   L L   ++      G  + A    +  
Sbjct: 319 RFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.8 bits (207), Expect = 9e-18
 Identities = 67/353 (18%), Positives = 110/353 (31%), Gaps = 75/353 (21%)

Query: 26  ICELKNLIELNLEGNAIEGPLPQCL-KNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84
            C       LN+  + +   LP CL  ++T L    I  N L+ SLP+       L+ L+
Sbjct: 36  ACLNNGNAVLNVGESGLTT-LPDCLPAHITTLV---IPDNNLT-SLPA---LPPELRTLE 87

Query: 85  LSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTL 144
           +S N    +           L   + S     L       LP+                 
Sbjct: 88  VSGNQLTSLP--VLPPGLLELS--IFSNPLTHLPA-----LPSG---------------- 122

Query: 145 GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHH 204
                   L  L +  N+L  S P         L+ L +++N       L       L  
Sbjct: 123 --------LCKLWIFGNQL-TSLPVLP----PGLQELSVSDNQLA---SLPAL-PSELCK 165

Query: 205 LDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGE 264
           L   +N  T  LP   S     L  L +S N+   S+ +  SE+  L   +         
Sbjct: 166 LWAYNNQLT-SLPMLPS----GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPAL 219

Query: 265 LSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARS 324
            S         L  L +S N          +  ++L  L +  N  +             
Sbjct: 220 PS--------GLKELIVSGNRLTSL----PVLPSELKELMVSGNRLTS-----LPMLPSG 262

Query: 325 LQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILD 377
           L  L +  N+L  ++P  + + SS   + +  N L       L+ + +     
Sbjct: 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 9/88 (10%)

Query: 297 LTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSK 356
                 L++  +  +  + +   +    +  L I +N L   +P+       L  L VS 
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPAH---ITTLVIPDNNLT-SLPALPPE---LRTLEVSG 90

Query: 357 NLLEGNIPVQLKNLEALEILDVSENNLS 384
           N L  ++PV    L  L I      +L 
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLP 117

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.4 bits (206), Expect = 3e-18
 Identities = 61/298 (20%), Positives = 103/298 (34%), Gaps = 20/298 (6%)

Query: 101 NHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQ--KQHDLKSLDL 158
           N S+ +    S  N     + E +     L+ L  R         F    K   LK L +
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75

Query: 159 SHNKLVGSFPAWLLQH--NTKLEVLRLTNNSFTGS-----LQLSNSKLDFLHHLDISSNS 211
              ++        L+    + L+ L L N   TG+     L+ +   L+ L+  ++S  +
Sbjct: 76  RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135

Query: 212 FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELS---AP 268
               L +    +   L  L +++          +     L  LDLS N   GE     A 
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

Query: 269 LLTGCFSLWLLDLSHNSFC---GQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSL 325
                 +L +L L +       G  S       QL  L L +N+               L
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 326 QVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383
             L++S   L  Q+P  +   + L++L +S N L+   P   + L  +  L +  N  
Sbjct: 256 NSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR-NPSPDE-LPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.4 bits (193), Expect = 2e-16
 Identities = 54/288 (18%), Positives = 83/288 (28%), Gaps = 20/288 (6%)

Query: 64  NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLS--LVNNTLEVET 121
           N L  +   +     SL+YL    +    +   + +    +L+   +    + + +    
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 122 ENWLPTSQLKVLHLRNCNLNGTL---GFLQKQHDLKSLDLSHNKLVG---SFPAWLLQHN 175
              L  S L+ L L N  + GT           DL  L+L +                  
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGR------LPQNMSTILQKLVY 229
             L+VL +                  L  LD+S N   G       L       LQ L  
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289
            +       G  S+  +    L+ LDLS N       AP       L  L+LS       
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268

Query: 290 VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVG 337
                  L+    L L  N      S   L     +  L +  N  + 
Sbjct: 269 PKGLPAKLS---VLDLSYNRLDRNPSPDELPQ---VGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.3 bits (185), Expect = 2e-15
 Identities = 53/294 (18%), Positives = 93/294 (31%), Gaps = 40/294 (13%)

Query: 5   KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLK---NLTRLKVFGI 61
           ++L+ L           +   I +  +L  L +    I   +         ++ L+   +
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 62  SSNQLSGSLPSVIASLT--SLQYLDLSDNYFQGIF-YLSSLGNHSNLEFFMLSLVNNTLE 118
            + +++G+ P  +   T   L  L+L +  +     +L+ L         +LS+      
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 119 VETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFP---AWLLQHN 175
                     Q++V                    L +LDLS N  +G      A      
Sbjct: 163 N-----FSCEQVRVF-----------------PALSTLDLSDNPELGERGLISALCPLKF 200

Query: 176 TKLEVLRLTNNSFT---GSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDM 232
             L+VL L N       G      +    L  LD+S NS              +L  L++
Sbjct: 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

Query: 233 SKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF 286
           S    +  +   +     L  LDLS N+       P       +  L L  N F
Sbjct: 261 SFTGLK-QVPKGLPAK--LSVLDLSYNRLD---RNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.8 bits (150), Expect = 6e-11
 Identities = 54/244 (22%), Positives = 76/244 (31%), Gaps = 37/244 (15%)

Query: 6   NLKALDLSYTGINGS-LENQGICELKNLIELNLEGNAIEGPLPQCLK----NLTRLKVFG 60
            L+ L L    + G+           +L  LNL   +         +        LKV  
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           I+           +    +L  LDLSDN   G   L S                      
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF--------------- 200

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGF----LQKQHDLKSLDLSHNKLVGSFPAWLLQHNT 176
                    L+VL LRN  +    G        +  L+ LDLSHN L  +  A      +
Sbjct: 201 -------PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253

Query: 177 KLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNK 236
           +L  L L+        Q+       L  LD+S N    R P      L ++  L +  N 
Sbjct: 254 QLNSLNLSFTGLK---QVPKGLPAKLSVLDLSYNRLD-RNPSPDE--LPQVGNLSLKGNP 307

Query: 237 FEGS 240
           F  S
Sbjct: 308 FLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.7 bits (147), Expect = 1e-10
 Identities = 36/169 (21%), Positives = 56/169 (33%), Gaps = 13/169 (7%)

Query: 5   KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPL-------PQCLKNLTRLK 57
             LK L ++      +   + +     L  L+L  N   G         P     L  L 
Sbjct: 149 PGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 58  VFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL 117
           +        SG   ++ A+   LQ LDLS N  +      S    S L    L+L    L
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS--LNLSFTGL 265

Query: 118 EVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGS 166
           +   +      +L VL L    L+       +   + +L L  N  + S
Sbjct: 266 KQVPKGLPA--KLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 37/197 (18%), Positives = 67/197 (34%), Gaps = 14/197 (7%)

Query: 202 LHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKD---LRFLDLSR 258
           L +L    ++               L  L +   +    I      +     L+ L L  
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104

Query: 259 NQFSGELSAPLLTGCF-SLWLLDLSHNSFCGQVS--PKFMNLTQLGWLSLD-NNNFSGRI 314
            + +G    PLL      L +L+L + S+  + +   +     + G   L      S   
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164

Query: 315 SNGFLSSARSLQVLDISNNKLVGQIPSWI----GNFSSLALLTVSKNLLE---GNIPVQL 367
           S   +    +L  LD+S+N  +G+           F +L +L +    +E   G      
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 368 KNLEALEILDVSENNLS 384
                L+ LD+S N+L 
Sbjct: 225 AARVQLQGLDLSHNSLR 241

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 37/193 (19%), Positives = 62/193 (32%), Gaps = 11/193 (5%)

Query: 5   KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSN 64
             L   ++S+   +  L          L  L++          + ++    L    +S N
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183

Query: 65  QLSGSLPSVIA----SLTSLQYLDLSDNYFQGIFYL--SSLGNHSNLEFFMLSLVNNTLE 118
              G    + A       +LQ L L +   +    +  +       L+   LS  +    
Sbjct: 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243

Query: 119 VETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKL 178
               +    SQL  L+L    L      L  +  L  LDLS+N+L  +     L     +
Sbjct: 244 AGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK--LSVLDLSYNRLDRNPSPDELPQ---V 298

Query: 179 EVLRLTNNSFTGS 191
             L L  N F  S
Sbjct: 299 GNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
            A    L+ LDLS+  +  +           L  LNL    ++         L+ L +  
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDL-- 281

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQG 92
            S N+L    PS    L  +  L L  N F  
Sbjct: 282 -SYNRLD-RNPS-PDELPQVGNLSLKGNPFLD 310

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 84.3 bits (209), Expect = 4e-18
 Identities = 84/397 (21%), Positives = 139/397 (35%), Gaps = 75/397 (18%)

Query: 5   KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSN 64
           +    L+L+  G++ SL         +L  L    N++   LP+  ++L  L V   +  
Sbjct: 71  RQAHELELNNLGLS-SLPE----LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 124

Query: 65  QLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENW 124
            LS   P        L+YL +S+N    +  L  L N S L+  ++ + NN+L+      
Sbjct: 125 ALSDLPP-------LLEYLGVSNN---QLEKLPELQNSSFLK--IIDVDNNSLKK----- 167

Query: 125 LPTS--QLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLR 182
           LP     L+ +   N  L   L  LQ    L ++   +N L    P         LE + 
Sbjct: 168 LPDLPPSLEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSLK-KLPDLP----LSLESIV 221

Query: 183 LTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSIS 242
             NN      +L N  L FL  +   +N         +  +   L  L++  N     + 
Sbjct: 222 AGNNILEELPELQN--LPFLTTIYADNNLLK-----TLPDLPPSLEALNVRDNYLT-DLP 273

Query: 243 SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGW 302
                +  L   +   +  S            +L+ L+ S N    ++         L  
Sbjct: 274 ELPQSLTFLDVSENIFSGLSELPP--------NLYYLNASSN----EIRSLCDLPPSLEE 321

Query: 303 LSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG- 361
           L++ NN           +    L+ L  S N L  ++P    N   L  L V  N L   
Sbjct: 322 LNVSNNKLI-----ELPALPPRLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLREF 372

Query: 362 -NIPVQLKNLEA-------------LEILDVSENNLS 384
            +IP  +++L               L+ L V  N L 
Sbjct: 373 PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 83.9 bits (208), Expect = 6e-18
 Identities = 77/394 (19%), Positives = 135/394 (34%), Gaps = 68/394 (17%)

Query: 5   KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSN 64
           K+L   + +   ++             L  L +  N +E  LP+ L+N + LK+  + +N
Sbjct: 114 KSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNN 163

Query: 65  QLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENW 124
            L      +     SL+++   +N  +    L  L N   L    +   NN+L+   +  
Sbjct: 164 SLK----KLPDLPPSLEFIAAGNNQLE---ELPELQNLPFLTA--IYADNNSLKKLPDLP 214

Query: 125 LPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLT 184
                L+ +   N  L   L  LQ    L ++   +N L  + P         LE L + 
Sbjct: 215 ---LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLK-TLPDLP----PSLEALNVR 265

Query: 185 NNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSS 244
           +N  T   +L  S    L  LD+S N F+      +S +   L YL+ S N+    I S 
Sbjct: 266 DNYLTDLPELPQS----LTFLDVSENIFS-----GLSELPPNLYYLNASSNE----IRSL 312

Query: 245 ISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLS 304
                 L  L++S N+        L      L  L  S N    +V     NL     L 
Sbjct: 313 CDLPPSLEELNVSNNKLIE-----LPALPPRLERLIASFNHLA-EVPELPQNLK---QLH 363

Query: 305 LDNNNFS--------------GRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLA 350
           ++ N                            ++L+ L +  N L  + P    +   + 
Sbjct: 364 VEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPES---VE 419

Query: 351 LLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
            L ++   +        +  + LE      ++  
Sbjct: 420 DLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 76/394 (19%), Positives = 123/394 (31%), Gaps = 65/394 (16%)

Query: 26  ICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASL-------- 77
                 L E     + +   +P   +N+     +  + ++   + P              
Sbjct: 7   NVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 78  -----TSLQYLDLSDNYFQ----GIFYLSSL---GNH-SNLEFFMLSLVNNTLEVETENW 124
                     L+L++           +L SL    N  + L     SL +  ++      
Sbjct: 66  RDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA 125

Query: 125 LPT--SQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLR 182
           L      L+ L + N  L   L  LQ    LK +D+ +N L    P         LE + 
Sbjct: 126 LSDLPPLLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSLK-KLPDLP----PSLEFIA 179

Query: 183 LTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSIS 242
             NN      +L N  L FL  +   +NS   +LP         L  +    N       
Sbjct: 180 AGNNQLEELPELQN--LPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNIL--EEL 230

Query: 243 SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGW 302
             +  +  L  +    N         L     SL  L++  N     +     +LT L  
Sbjct: 231 PELQNLPFLTTIYADNNLLKT-----LPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDV 284

Query: 303 LSLDNNNFSGRISN------------GFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLA 350
                +  S    N                   SL+ L++SNNKL+ ++P+       L 
Sbjct: 285 SENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LE 340

Query: 351 LLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
            L  S N L   +P   +N   L+ L V  N L 
Sbjct: 341 RLIASFNHLA-EVPELPQN---LKQLHVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 47/323 (14%), Positives = 95/323 (29%), Gaps = 56/323 (17%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
             +L+ +      +   L    +  L  L  +  + N+++  LP    +L  +      +
Sbjct: 172 PPSLEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLKK-LPDLPLSLESIVA---GN 224

Query: 64  NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETEN 123
           N L   LP  + +L  L  +   +N  + +       +   L      L    L    ++
Sbjct: 225 NILE-ELPE-LQNLPFLTTIYADNNLLKTLP--DLPPSLEALNVRDNYL--TDLPELPQS 278

Query: 124 WLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRL 183
               + L V       L+          +L  L+ S N++       L      LE L +
Sbjct: 279 L---TFLDVSENIFSGLSELPP------NLYYLNASSNEIRS-----LCDLPPSLEELNV 324

Query: 184 TNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFE----- 238
           +NN     L     +L     L  S N     +P+      Q L  L +  N        
Sbjct: 325 SNNKLI-ELPALPPRL---ERLIASFNHLA-EVPEL----PQNLKQLHVEYNPLREFPDI 375

Query: 239 ----------GSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCG 288
                       ++      ++L+ L +  N               S+  L ++      
Sbjct: 376 PESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE-----FPDIPESVEDLRMNSERVVD 430

Query: 289 QVSPKFMNLTQLGWLSLDNNNFS 311
                     +L     ++++  
Sbjct: 431 PYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 42/275 (15%), Positives = 76/275 (27%), Gaps = 67/275 (24%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L     L  +      +    +        +L  LN+  N +   LP+  ++LT L V  
Sbjct: 233 LQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTD-LPELPQSLTFLDVSE 286

Query: 61  ISSNQLSGSLPS-------------VIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEF 107
              + LS   P+             +     SL+ L++S+N    +   +          
Sbjct: 287 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP--ALPPR------ 338

Query: 108 FMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSF 167
                                 L+ L     +L       Q    LK L + +N L   F
Sbjct: 339 ----------------------LERLIASFNHLAEVPELPQN---LKQLHVEYNPLR-EF 372

Query: 168 PAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKL 227
           P         +E LR+ ++         N     L  L + +N            I + +
Sbjct: 373 PDIP----ESVEDLRMNSHLAEVPELPQN-----LKQLHVETNPLR-----EFPDIPESV 418

Query: 228 VYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFS 262
             L M+  +       +      L       +   
Sbjct: 419 EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 84.9 bits (210), Expect = 5e-18
 Identities = 76/395 (19%), Positives = 152/395 (38%), Gaps = 25/395 (6%)

Query: 5   KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEG-PLPQCLKNLTRLKVFGISS 63
           ++L+ LD+S    +  L+N   C + +L  L+L  N  +  P+ +   NLT+L   G+S+
Sbjct: 100 QDLEYLDVS----HNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155

Query: 64  NQLSGSLPSVIASL------TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL 117
            +        +A L        L    +     + +   ++   H       L  V   +
Sbjct: 156 AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215

Query: 118 EVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKL--VGSFPAWLLQHN 175
            V     L  S +K+       L   L  L +   L ++ L H +     S   +     
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275

Query: 176 TKLEVLRLTNNSFTG-----SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYL 230
             +E L + N + T          S + L  L    + +  F     + + ++  ++   
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIK 334

Query: 231 DMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF--CG 288
            +S +                 FL+ ++N F+ +      +    L  L L  N      
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLKNFF 393

Query: 289 QVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSS 348
           +V+    N++ L  L +  N+ +    +   + A S+ VL++S+N L G +   +     
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PK 451

Query: 349 LALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383
           + +L +  N +  +IP  + +L+AL+ L+V+ N L
Sbjct: 452 VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 82.2 bits (203), Expect = 4e-17
 Identities = 71/396 (17%), Positives = 143/396 (36%), Gaps = 22/396 (5%)

Query: 3   KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG-I 61
              +L+ LDLS+   +     +    L  L  L L            + +L    +   +
Sbjct: 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDL 178

Query: 62  SSNQLSGSLPSVIASL-TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSL-VNNTLEV 119
            S  + G     +    T++ +L    N    +    S+    +L+   + L   N   +
Sbjct: 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL 238

Query: 120 ETENWLPTSQLKVLHLRNCNLNGTLGFL------QKQHDLKSLDLSHNKLVGS----FPA 169
            T     T    +L++   ++  T               ++ L++ +  +          
Sbjct: 239 MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT 298

Query: 170 WLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVY 229
           +       L +  + N  F  S +   S    ++   +S +  T  +            +
Sbjct: 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD-TPFIHMVCPPSPSSFTF 357

Query: 230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQF-SGELSAPLLTGCFSLWLLDLSHNSF-C 287
           L+ ++N F  S+    S +K L+ L L RN   +    A +     SL  LD+S NS   
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417

Query: 288 GQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFS 347
                       +  L+L +N  +G +   F      ++VLD+ NN++   IP  + +  
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNRI-MSIPKDVTHLQ 473

Query: 348 SLALLTVSKNLLEGNIPV-QLKNLEALEILDVSENN 382
           +L  L V+ N L+ ++P      L +L+ + + +N 
Sbjct: 474 ALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 76.4 bits (188), Expect = 2e-15
 Identities = 67/371 (18%), Positives = 128/371 (34%), Gaps = 24/371 (6%)

Query: 31  NLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYF 90
               L+L  N+I       +  L+ L+V  +S N++      V      L+YLD+S N  
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 91  QGIFYLSSLGNHSNLEFFMLSLVNNTLEV--ETENWLPTSQLKVLHLRNCNLNGT--LGF 146
           Q I    S    ++L    L L  N  +V    + +   ++L  L L          L  
Sbjct: 113 QNI----SCCPMASLRH--LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166

Query: 147 LQKQHDLKSLDLSHNKL-VGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHL 205
                    LDL    +  G   +  + + T L ++   N+ F+  + +S + L  L   
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 206 DISSNSFTGRLPQNMST------ILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRN 259
           +I  N    +      +       L  +    +                + + +L++   
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 260 QFSGELSAPLLTGCF----SLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRIS 315
             +  +     T       SL +  + +  F       +    ++    L  ++ +  I 
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD-TPFIH 345

Query: 316 NGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE--GNIPVQLKNLEAL 373
                S  S   L+ + N     +         L  L + +N L+    + +  KN+ +L
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL 405

Query: 374 EILDVSENNLS 384
           E LDVS N+L+
Sbjct: 406 ETLDVSLNSLN 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 42/214 (19%), Positives = 76/214 (35%), Gaps = 13/214 (6%)

Query: 29  LKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDN 88
           LK+L+  +++                 + +  +S +           S +S  +L+ + N
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363

Query: 89  YFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTL---- 144
            F              L+  +L    N L+   +  L T  +  L   + +LN       
Sbjct: 364 VFTDS-VFQGCSTLKRLQTLILQ--RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420

Query: 145 -GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLH 203
                    +  L+LS N L GS    L      ++VL L NN    S+    + L  L 
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCLPPK---VKVLDLHNNRIM-SIPKDVTHLQALQ 476

Query: 204 HLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKF 237
            L+++SN     +P  +   L  L Y+ +  N +
Sbjct: 477 ELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 22/93 (23%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
                +L+ LD+S   +N    ++     ++++ LNL  N + G + +CL    ++KV  
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLD 456

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGI 93
           + +N++  S+P  +  L +LQ L+++ N  + +
Sbjct: 457 LHNNRIM-SIPKDVTHLQALQELNVASNQLKSV 488

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.3 bits (204), Expect = 5e-18
 Identities = 39/207 (18%), Positives = 68/207 (32%), Gaps = 5/207 (2%)

Query: 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS 211
             + + L  N++    PA   +    L +L L +N        + + L  L  LD+S N+
Sbjct: 33  ASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 212 FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSI-SEMKDLRFLDLSRNQFSGELSAPLL 270
               +       L +L  L + +   +  +   +   +  L++L L  N     L     
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149

Query: 271 TGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDI 330
               +L  L L  N         F  L  L  L L  N  +  +          L  L +
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYL 208

Query: 331 SNNKLVGQIPSWIGNFSSLALLTVSKN 357
             N L       +    +L  L ++ N
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.5 bits (194), Expect = 1e-16
 Identities = 51/212 (24%), Positives = 82/212 (38%), Gaps = 9/212 (4%)

Query: 125 LPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRL 183
           +P +  + + L    ++       +   +L  L L  N L     A        LE L L
Sbjct: 30  IPAA-SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDL 87

Query: 184 TNNSFTGSLQLSN-SKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSIS 242
           ++N+   S+  +    L  LH L +        L   +   L  L YL +  N  +    
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 243 SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK-FMNLTQLG 301
            +  ++ +L  L L  N+ S  +      G  SL  L L  N     V P  F +L +L 
Sbjct: 147 DTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGRLM 204

Query: 302 WLSLDNNNFSGRISNGFLSSARSLQVLDISNN 333
            L L  NN S  +    L+  R+LQ L +++N
Sbjct: 205 TLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 46/234 (19%), Positives = 74/234 (31%), Gaps = 31/234 (13%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
               + + L    I+  +        +NL  L L  N +          L  L+   +S 
Sbjct: 31  PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 64  NQLSGSLPS-VIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETE 122
           N    S+       L  L  L L          L  LG      F  L            
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRC------GLQELGPGL---FRGL------------ 128

Query: 123 NWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVL 181
                + L+ L+L++  L        +   +L  L L  N++  S P    +    L+ L
Sbjct: 129 -----AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRL 182

Query: 182 RLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
            L  N        +   L  L  L + +N+ +  LP      L+ L YL ++ N
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.2 bits (175), Expect = 4e-14
 Identities = 38/183 (20%), Positives = 66/183 (36%), Gaps = 7/183 (3%)

Query: 203 HHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFS 262
                        +P  +    Q    + +  N+     ++S    ++L  L L  N  +
Sbjct: 14  VTTSCPQQGLQ-AVPVGIPAASQ---RIFLHGNRISHVPAASFRACRNLTILWLHSNVLA 69

Query: 263 GELSAPLLTGCFSLWLLDLSHNSFCGQVSPK-FMNLTQLGWLSLDNNNFSGRISNGFLSS 321
             + A   TG   L  LDLS N+    V P  F  L +L  L LD       +  G    
Sbjct: 70  -RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRG 127

Query: 322 ARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSEN 381
             +LQ L + +N L         +  +L  L +  N +        + L +L+ L + +N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 382 NLS 384
            ++
Sbjct: 188 RVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 1/88 (1%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
                 L+ L L    +  +L +    +L NL  L L GN I     +  + L  L    
Sbjct: 125 FRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDN 88
           +  N+++   P     L  L  L L  N
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.0 bits (208), Expect = 6e-18
 Identities = 80/384 (20%), Positives = 126/384 (32%), Gaps = 47/384 (12%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
             +   L +LD   + I       GI +L  L +L    N I   L   L   T L    
Sbjct: 38  EEQLATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLA 91

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
             SN+L+ +L   +  LT L YL+   N    +     +  +  L    L+   NTL   
Sbjct: 92  CDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKL----DVSQNPLLT--YLNCARNTL--T 140

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
             +    +QL  L          L    +   L +LD S NK+        +  N  L  
Sbjct: 141 EIDVSHNTQLTELDCHLNKKITKLDVTPQTQ-LTTLDCSFNKITELD----VSQNKLLNR 195

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGS 240
           L    N+ T   +L  ++   L  LD SSN  T          L +L Y D S N     
Sbjct: 196 LNCDTNNIT---KLDLNQNIQLTFLDCSSNKLTEIDVTP----LTQLTYFDCSVNPLT-- 246

Query: 241 ISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQL 300
               +S +  L  L   +     E+     T                        + TQL
Sbjct: 247 -ELDVSTLSKLTTLHCIQTDLL-EIDLTHNTQLIYFQAEGCRKIK-----ELDVTHNTQL 299

Query: 301 GWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE 360
             L          I+   LS    L  L ++N +L  ++   + + + L  L+     ++
Sbjct: 300 YLLDCQAAG----ITELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352

Query: 361 GNIPVQLKNLEALEILDVSENNLS 384
            +    +  + AL     +E    
Sbjct: 353 -DFSS-VGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 77.4 bits (191), Expect = 8e-16
 Identities = 66/390 (16%), Positives = 130/390 (33%), Gaps = 52/390 (13%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           + K   L  L  +      ++    + +  NL  L  + N +   L   +  LT+L    
Sbjct: 60  IEKLTGLTKLICTSN----NITTLDLSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLN 112

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
             +N+L+  L   ++    L YL+ + N    I     + +++ L      L     +++
Sbjct: 113 CDTNKLT-KLD--VSQNPLLTYLNCARNTLTEI----DVSHNTQLTELDCHLNKKITKLD 165

Query: 121 TENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLE 179
                  +QL  L      +    +   +    L  L+   N +        L  N +L 
Sbjct: 166 VTP---QTQLTTLDCSFNKITELDVSQNKL---LNRLNCDTNNIT-KLD---LNQNIQLT 215

Query: 180 VLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEG 239
            L  ++N  T   ++  + L  L + D S N  T  L  +    L KL  L   +     
Sbjct: 216 FLDCSSNKLT---EIDVTPLTQLTYFDCSVNPLT-ELDVS---TLSKLTTLHCIQTDLL- 267

Query: 240 SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQ 299
                ++    L +      +   ++    +T    L+LLD                  +
Sbjct: 268 --EIDLTHNTQLIYFQAEGCR---KIKELDVTHNTQLYLLDCQAAGI---TELDLSQNPK 319

Query: 300 LGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLL 359
           L +L L+N      ++   +S    L+ L   N  +     S +G   +L     ++   
Sbjct: 320 LVYLYLNNTE----LTELDVSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQT 373

Query: 360 EGNIPVQLKNLE-----ALEILDVSENNLS 384
                  L N       + ++LD   N ++
Sbjct: 374 ITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 64/355 (18%), Positives = 115/355 (32%), Gaps = 41/355 (11%)

Query: 30  KNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNY 89
            N          ++       + L  L      ++ ++  +   I  LT L  L  + N 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNN 75

Query: 90  FQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQK 149
              +     L  ++NL    L+  +N L     +  P ++L  L+     L  T   + +
Sbjct: 76  ITTL----DLSQNTNLT--YLACDSNKL--TNLDVTPLTKLTYLNCDTNKL--TKLDVSQ 125

Query: 150 QHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISS 209
              L  L+ + N L        + HNT+L  L    N     L ++      L  LD S 
Sbjct: 126 NPLLTYLNCARNTLT----EIDVSHNTQLTELDCHLNKKITKLDVTP--QTQLTTLDCSF 179

Query: 210 NSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPL 269
           N  T           + L  L+   N         +++   L FLD S N+    L+   
Sbjct: 180 NKITELDVSQ----NKLLNRLNCDTNNIT---KLDLNQNIQLTFLDCSSNK----LTEID 228

Query: 270 LTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLD 329
           +T    L   D S N            L++L  L     +    +    L+    L    
Sbjct: 229 VTPLTQLTYFDCSVNPL---TELDVSTLSKLTTLHCIQTD----LLEIDLTHNTQLIYFQ 281

Query: 330 ISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
               + + ++   + + + L LL      +     + L     L  L ++   L+
Sbjct: 282 AEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT 331

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.9 bits (199), Expect = 8e-17
 Identities = 55/261 (21%), Positives = 104/261 (39%), Gaps = 26/261 (9%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
              F      +L    +    +     EL ++ ++    + I+    Q ++ L  +    
Sbjct: 17  DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 71

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           ++ N+L+   P  + +L +L +L L +N    I  LSSL +   L+   LSL +N +  +
Sbjct: 72  LNGNKLTDIKP--LTNLKNLGWLFLDEN---KIKDLSSLKDLKKLK--SLSLEHNGIS-D 123

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
               +   QL+ L+L N  +   +  L +   L +L L  N++    P   L   TKL+ 
Sbjct: 124 INGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQN 179

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMS--TILQKLVYLDMSKNKFE 238
           L L+ N  +    L+   L  L  L++ S     +   + S   +   +   D S    E
Sbjct: 180 LYLSKNHISDLRALAG--LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE 237

Query: 239 GSISSSISEMKDLRFLDLSRN 259
                 IS+  D    ++  +
Sbjct: 238 -----IISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.8 bits (183), Expect = 1e-14
 Identities = 49/258 (18%), Positives = 99/258 (38%), Gaps = 28/258 (10%)

Query: 7   LKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQL 66
           +       T I   +           I+ NL+  ++   +      L  +     +++ +
Sbjct: 1   MGETITVSTPIK-QIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI 55

Query: 67  SGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL-EVETENWL 125
             S+   I  L ++  L L+ N    I  L++L    NL +  L L  N + ++ +   L
Sbjct: 56  K-SV-QGIQYLPNVTKLFLNGNKLTDIKPLTNL---KNLGW--LFLDENKIKDLSSLKDL 108

Query: 126 PTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTN 185
              +LK L L +  ++  +  L     L+SL L +NK+        L   TKL+ L L +
Sbjct: 109 K--KLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDITV---LSRLTKLDTLSLED 162

Query: 186 NSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI--LQKLVYLDMSKNKFEGSISS 243
           N  +  + L+   L  L +L +S N  +     ++  +  L+ L  L++   +      +
Sbjct: 163 NQISDIVPLAG--LTKLQNLYLSKNHIS-----DLRALAGLKNLDVLELFSQECLNKPIN 215

Query: 244 SISEMKDLRFLDLSRNQF 261
             S +     +  +    
Sbjct: 216 HQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.1 bits (163), Expect = 3e-12
 Identities = 47/262 (17%), Positives = 101/262 (38%), Gaps = 31/262 (11%)

Query: 128 SQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNS 187
           ++    +L+  ++        + + +  +  +++ +        +Q+   +  L L  N 
Sbjct: 21  AETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNK 76

Query: 188 FTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI--LQKLVYLDMSKNKFEGSISSSI 245
            T    L+N  L  L  L +  N        ++S++  L+KL  L +  N     I+  +
Sbjct: 77  LTDIKPLTN--LKNLGWLFLDENKIK-----DLSSLKDLKKLKSLSLEHNGIS-DING-L 127

Query: 246 SEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVS--PKFMNLTQLGWL 303
             +  L  L L  N+ + +++   L+    L  L L  N    Q+S       LT+L  L
Sbjct: 128 VHLPQLESLYLGNNKIT-DITV--LSRLTKLDTLSLEDN----QISDIVPLAGLTKLQNL 180

Query: 304 SLDNNNFSGRISN-GFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGN 362
            L  N+    IS+   L+  ++L VL++ + + + +  +   N      +  +   L   
Sbjct: 181 YLSKNH----ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--V 234

Query: 363 IPVQLKNLEALEILDVSENNLS 384
            P  + +    E  +V  +   
Sbjct: 235 TPEIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.7 bits (144), Expect = 7e-10
 Identities = 30/163 (18%), Positives = 67/163 (41%), Gaps = 18/163 (11%)

Query: 224 LQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSH 283
             + +  ++ K     +   + +E+  +  +  + +     +    +    ++  L L+ 
Sbjct: 20  FAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNG 74

Query: 284 NSFCGQVS--PKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPS 341
           N    +++      NL  LGWL LD N     +S+  L   + L+ L + +N +     +
Sbjct: 75  N----KLTDIKPLTNLKNLGWLFLDENKIK-DLSS--LKDLKKLKSLSLEHNGI--SDIN 125

Query: 342 WIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
            + +   L  L +  N +  +I V L  L  L+ L + +N +S
Sbjct: 126 GLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS 166

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 71.7 bits (176), Expect = 6e-14
 Identities = 60/314 (19%), Positives = 105/314 (33%), Gaps = 61/314 (19%)

Query: 7   LKALDLSYTGINGSLENQGICEL----KNLIELNLEGNAI--EG--PLPQCLKNLTRLKV 58
           ++   L    I  + + + +  +     ++ E+ L GN I  E    L + + +   L++
Sbjct: 6   IEGKSLKLDAI-TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 59  FGISSNQLS----------GSLPSVIASLTSLQYLDLSDNYF--QGIFYLSS-LGNHSNL 105
              S                 L   +     L  + LSDN F       L   L  H+ L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 106 EFFMLSLVNNTLEVE--------------TENWLPTSQLKVLHLRNCNL--NGTLGF--- 146
           E   L L NN L  +               +       L+ +      L       +   
Sbjct: 125 EH--LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 147 LQKQHDLKSLDLSHNKL----VGSFPAWLLQHNTKLEVLRLTNNSFT--GSLQLSN--SK 198
            Q    L ++ +  N +    +       L +  +L+VL L +N+FT  GS  L+     
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 199 LDFLHHLDISSNSFTGRLPQNMSTILQ-----KLVYLDMSKNKFEGSISSSISE-----M 248
              L  L ++    + R    +           L  L +  N+ E     ++       M
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302

Query: 249 KDLRFLDLSRNQFS 262
            DL FL+L+ N+FS
Sbjct: 303 PDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 54/348 (15%), Positives = 101/348 (29%), Gaps = 82/348 (23%)

Query: 32  LIELNLEGNAI--EG--PLPQCLKNLTRLKVFGISSNQLSG----SLPSVIASLTSLQYL 83
           +   +L+ +AI  E    +   L     +K   +S N +       L   IAS   L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 84  DLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGT 143
           + SD +   +           L   + +L+               +L  + L +    G 
Sbjct: 66  EFSDIFTGRVKDEIPEA----LRLLLQALLKCP------------KLHTVRLSDNAF-GP 108

Query: 144 LG------FLQKQHDLKSLDLSHNK------------LVGSFPAWLLQHNTKLEVLRLTN 185
                   FL K   L+ L L +N             L         ++   L  +    
Sbjct: 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168

Query: 186 NSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKF-----EGS 240
           N                   + S   +      +     + L  + M +N       E  
Sbjct: 169 NRLE----------------NGSMKEWAKTFQSH-----RLLHTVKMVQNGIRPEGIEHL 207

Query: 241 ISSSISEMKDLRFLDLSRNQFSGELSAPL---LTGCFSLWLLDLSHNSFCGQ------VS 291
           +   ++  ++L+ LDL  N F+   S+ L   L    +L  L L+      +       +
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267

Query: 292 PKFMNLTQLGWLSLDNNNFSGR----ISNGFLSSARSLQVLDISNNKL 335
              +    L  L L  N         +          L  L+++ N+ 
Sbjct: 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 61/364 (16%), Positives = 119/364 (32%), Gaps = 77/364 (21%)

Query: 50  LKNLTRLKVFGISSNQLSG----SLPSVIASLTSLQYLDLSDNYF--QGIFYLSS-LGNH 102
           +   + ++   +  + ++     S+ +V+    S++ + LS N    +   +LS  + + 
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 103 SNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNK 162
            +LE  +    +            T ++K        L      L K   L ++ LS N 
Sbjct: 60  KDLE--IAEFSDIF----------TGRVKDEIPEALRLLLQA--LLKCPKLHTVRLSDNA 105

Query: 163 L--VGSFP-AWLLQHNTKLEVLRLTNNSFT--GSLQLSNSKLDFLHHLDISSNSFTGRLP 217
                  P    L  +T LE L L NN        +++ +  +   +    +        
Sbjct: 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP------ 159

Query: 218 QNMSTILQKLVYLDMSKNKFEG----SISSSISEMKDLRFLDLSRNQFSGE----LSAPL 269
                    L  +   +N+ E       + +    + L  + + +N    E    L    
Sbjct: 160 --------PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 211

Query: 270 LTGCFSLWLLDLSHNSF----CGQVSPKFMNLTQLGWLSLDNNNFSGR----ISNGF-LS 320
           L  C  L +LDL  N+F       ++    +   L  L L++   S R    + + F   
Sbjct: 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271

Query: 321 SARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSE 380
               LQ L +  N+        I   +   L TV               +  L  L+++ 
Sbjct: 272 ENIGLQTLRLQYNE--------IELDAVRTLKTVIDE-----------KMPDLLFLELNG 312

Query: 381 NNLS 384
           N  S
Sbjct: 313 NRFS 316

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.9 bits (176), Expect = 7e-14
 Identities = 53/267 (19%), Positives = 88/267 (32%), Gaps = 34/267 (12%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
            + +   +   L     N ++     C +    EL L    +   LP  L    ++ V  
Sbjct: 30  FSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNL--PPQITVLE 86

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           I+ N L  SLP       SL+YLD  DN    +       +  +     L + NN L   
Sbjct: 87  ITQNALI-SLP---ELPASLEYLDACDNRLSTL--PELPASLKH-----LDVDNNQLT-- 133

Query: 121 TENWLPTS--QLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKL 178
               LP     L+ ++  N  L            L+ L + +N+L    P         L
Sbjct: 134 ---MLPELPALLEYINADNNQLTMLPELPTS---LEVLSVRNNQL-TFLPELP----ESL 182

Query: 179 EVLRLTNNSFTG---SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN 235
           E L ++ N           ++   +         N  T  +P+N+ + L     + +  N
Sbjct: 183 EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILS-LDPTCTIILEDN 240

Query: 236 KFEGSISSSISEMKDLRFLDLSRNQFS 262
                I  S+S+          R  FS
Sbjct: 241 PLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.2 bits (156), Expect = 2e-11
 Identities = 53/309 (17%), Positives = 96/309 (31%), Gaps = 57/309 (18%)

Query: 62  SSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVET 121
             N +SG+     ++    +   L                            N  + +  
Sbjct: 18  FYNTISGTYADYFSAWDKWEKQALPGE-----------------------NRNEAVSLLK 54

Query: 122 ENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVL 181
           E  +  +Q   L L   NL+     L  Q  +  L+++ N L+ S P         LE L
Sbjct: 55  ECLI--NQFSELQLNRLNLSSLPDNLPPQ--ITVLEITQNALI-SLPELP----ASLEYL 105

Query: 182 RLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSI 241
              +N  +    L       L HLD+ +N  T  LP+    +   L Y++   N+    +
Sbjct: 106 DACDNRLS---TLPEL-PASLKHLDVDNNQLT-MLPE----LPALLEYINADNNQLT-ML 155

Query: 242 SSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQL- 300
               +    L  L +  NQ +     P L    SL  LD+S N     +    +      
Sbjct: 156 PELPTS---LEVLSVRNNQLT---FLPELPE--SLEALDVSTNLL-ESLPAVPVRNHHSE 206

Query: 301 ---GWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN 357
               +     N  +  I    + S      + + +N L  +I   +   ++       + 
Sbjct: 207 ETEIFFRCRENRIT-HIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRI 264

Query: 358 LLEGNIPVQ 366
               +   Q
Sbjct: 265 YFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 7/130 (5%)

Query: 5   KNLKALDLSYTGINGSLENQGICELKNL----IELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           ++L+ALD+S   +  SL         +     I      N I   +P+ + +L       
Sbjct: 180 ESLEALDVSTNLLE-SL-PAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTII 236

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           +  N LS  +   ++  T+         YF       +  +    +        N     
Sbjct: 237 LEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDV 296

Query: 121 TENWLPTSQL 130
           ++ W      
Sbjct: 297 SQIWHAFEHE 306

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 30/189 (15%), Positives = 62/189 (32%), Gaps = 34/189 (17%)

Query: 2   AKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGI 61
           A+  +L  + L+   +   L   GI    N+ +L +         P  +  L+ L+   I
Sbjct: 41  AQMNSLTYITLANINVT-DLT--GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRI 95

Query: 62  SSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVET 121
               ++      ++ LTSL  LD+S +       L+ +     +                
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVN--------------- 139

Query: 122 ENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVL 181
                      + L        +  L+   +LKSL++  + +        ++   KL  L
Sbjct: 140 ----------SIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG---IEDFPKLNQL 186

Query: 182 RLTNNSFTG 190
              + +  G
Sbjct: 187 YAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 5/111 (4%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           +    N+K L ++            I  L NL  L + G  +       L  LT L +  
Sbjct: 62  IEYAHNIKDLTINNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLS 111
           IS +    S+ + I +L  +  +DLS N    I  +  L     L+   + 
Sbjct: 119 ISHSAHDDSILTKINTLPKVNSIDLSYN--GAITDIMPLKTLPELKSLNIQ 167

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 9/157 (5%)

Query: 128 SQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNS 187
           + L  + L N N+   L  ++  H++K L +++       P   +   + LE LR+    
Sbjct: 44  NSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHATNYNP---ISGLSNLERLRIMGKD 99

Query: 188 FTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISE 247
            T     + S L  L  LDIS ++    +   ++T L K+  +D+S N     I   +  
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSIDLSYNGAITDI-MPLKT 157

Query: 248 MKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHN 284
           + +L+ L++  +          +     L  L     
Sbjct: 158 LPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 30/189 (15%), Positives = 72/189 (38%), Gaps = 16/189 (8%)

Query: 28  ELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSD 87
             K  +   L  ++        + +LT + +  I+   L+G     I    +++ L +++
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG-----IEYAHNIKDLTINN 75

Query: 88  NYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPT-SQLKVLHLRNCNLNGT-LG 145
            +       + +   SNLE   L ++   +  +    L   + L +L + +   + + L 
Sbjct: 76  IHATNY---NPISGLSNLE--RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 146 FLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHL 205
            +     + S+DLS+N  +       L+   +L+ L +  +       + +     L+ L
Sbjct: 131 KINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRGIED--FPKLNQL 186

Query: 206 DISSNSFTG 214
              S +  G
Sbjct: 187 YAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 28/211 (13%), Positives = 76/211 (36%), Gaps = 38/211 (18%)

Query: 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI--LQKLVYLDMS 233
           +  +         + +  ++ ++++ L ++ +++ + T     +++ I     +  L ++
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-----DLTGIEYAHNIKDLTIN 74

Query: 234 KNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK 293
                 +  + IS + +L  L +     + +    L +G  SL LLD+SH++    +  K
Sbjct: 75  NIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSILTK 131

Query: 294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLT 353
              L ++  + L  N     I    L +   L+ L+I  +         + ++  +    
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDG--------VHDYRGI---- 177

Query: 354 VSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
                         ++   L  L      + 
Sbjct: 178 --------------EDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 27/191 (14%), Positives = 61/191 (31%), Gaps = 34/191 (17%)

Query: 74  IASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVL 133
            A + SL Y+ L++     +  +    N                            +K L
Sbjct: 40  EAQMNSLTYITLANINVTDLTGIEYAHN----------------------------IKDL 71

Query: 134 HLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQ 193
            + N +       +    +L+ L +    +        L   T L +L +++++   S+ 
Sbjct: 72  TINNIHAT-NYNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSIL 129

Query: 194 LSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRF 253
              + L  ++ +D+S N     +    +  L +L  L++  +         I +   L  
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMPLKT--LPELKSLNIQFDGVHD--YRGIEDFPKLNQ 185

Query: 254 LDLSRNQFSGE 264
           L        G+
Sbjct: 186 LYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNA-IEGPLPQCLKNLTRLKVF 59
           L+   +L  LD+S++  + S     I  L  +  ++L  N  I   +P  LK L  LK  
Sbjct: 108 LSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSL 164

Query: 60  GISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGI 93
            I  + +       I     L  L        G 
Sbjct: 165 NIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGK 196

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.5 bits (170), Expect = 3e-13
 Identities = 46/230 (20%), Positives = 76/230 (33%), Gaps = 8/230 (3%)

Query: 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSN-SKLDFLHHLDISSN 210
           +   L     KL              LE + ++ N     ++    S L  LH + I   
Sbjct: 31  NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 211 SFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLL 270
           +    +       L  L YL +S    +               LD+  N     +     
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 271 TGCFSLW-LLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLD 329
            G      +L L+ N    ++     N TQL  L+L +NN    + N     A    +LD
Sbjct: 150 VGLSFESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208

Query: 330 ISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVS 379
           IS  ++   +PS+     +L  L          +P  L+ L AL    ++
Sbjct: 209 ISRTRIH-SLPSYG--LENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.6 bits (160), Expect = 4e-12
 Identities = 45/215 (20%), Positives = 80/215 (37%), Gaps = 11/215 (5%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLE-GNAIEGPLPQCLKNLTRLKVF 59
            + F +L+ +++S   +   +E      L  L E+ +E  N +    P+  +NL  L+  
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109

Query: 60  GISSNQLSGSLPSVIASLTSLQYLDLSDN-YFQGIFYLSSLGNHSNLEFFMLSLVNNTLE 118
            IS+  +                LD+ DN     I   S +G         L L  N ++
Sbjct: 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI--LWLNKNGIQ 167

Query: 119 VETENWLPTSQLKVLHLRNCNLNGTL--GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNT 176
               +    +QL  L+L + N    L             LD+S  ++  S P++ L++  
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLK 226

Query: 177 KLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS 211
           KL      N     +L+    KL  L    ++  S
Sbjct: 227 KLRARSTYNLKKLPTLE----KLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.6 bits (160), Expect = 4e-12
 Identities = 37/264 (14%), Positives = 71/264 (26%), Gaps = 43/264 (16%)

Query: 51  KNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFML 110
           +N   L+       +L        +    L+ +++S N    +       N   L    +
Sbjct: 30  RNAIELR---FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86

Query: 111 SLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAW 170
              N               L  ++            L     L+ L +S+  +    P  
Sbjct: 87  EKAN--------------NLLYIN------PEAFQNLPN---LQYLLISNTGIK-HLPDV 122

Query: 171 LLQHNTKLEVLRLTNNSFTGSLQ------LSNSKLDFLHHLDISSNSFTGRLPQNMSTIL 224
              H+ +  +L + +N    +++      LS         L ++ N     +  +     
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE----SVILWLNKNGIQ-EIHNSAFNGT 177

Query: 225 QKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHN 284
           Q         N  E   +           LD+SR +    L +  L     L      + 
Sbjct: 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL 236

Query: 285 SFCGQVSPKFMNLTQLGWLSLDNN 308
               +  P    L  L   SL   
Sbjct: 237 ----KKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 32/209 (15%), Positives = 63/209 (30%), Gaps = 9/209 (4%)

Query: 128 SQLKVLHLRNCNLNGTL--GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTN 185
             L+ + +   ++   +          L  + +     +        Q+   L+ L ++N
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 113

Query: 186 NSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQ-KLVYLDMSKNKFEGSISSS 244
                   +          LDI  N     + +N    L  + V L ++KN  +   +S+
Sbjct: 114 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173

Query: 245 ISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLS 304
            +  +         N    EL   +  G     +LD+S        S    NL +L   S
Sbjct: 174 FNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS 232

Query: 305 LDNNNFSGRISNGFLSSARSLQVLDISNN 333
             N           L    +L    ++  
Sbjct: 233 TYNL-----KKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 39/237 (16%), Positives = 76/237 (32%), Gaps = 17/237 (7%)

Query: 30  KNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPS-VIASLTSLQYLDLSDN 88
           +N IEL      +             L+   IS N +   + + V ++L  L  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 89  YFQGIFYLSS--LGNHSNLEFFMLSLVNNTL-EVETENWLPTSQLKVLHLRNCNLNGTLG 145
               + Y++     N  NL++  L + N  +  +   + + + Q  +L +++     T+ 
Sbjct: 90  --NNLLYINPEAFQNLPNLQY--LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 146 ---FLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFL 202
              F+    +   L L+ N +               E+    NN+               
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204

Query: 203 HHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRN 259
             LDIS       LP      L+KL        K   ++      +  L    L+  
Sbjct: 205 VILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPTLEK----LVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.6 bits (134), Expect = 8e-09
 Identities = 28/190 (14%), Positives = 64/190 (33%), Gaps = 13/190 (6%)

Query: 202 LHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSI-SEMKDLRFLDLSRNQ 260
              L          + +   +    L  +++S+N     I + + S +  L  + + +  
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 261 FSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNG-FL 319
               ++        +L  L +S+           ++  Q   L + +N     I    F+
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 320 SSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGN----IPVQ-LKNLEALE 374
             +    +L ++ N +  +I +    F+   L  +  NL + N    +P           
Sbjct: 151 GLSFESVILWLNKNGIQ-EIHN--SAFNGTQLDEL--NLSDNNNLEELPNDVFHGASGPV 205

Query: 375 ILDVSENNLS 384
           ILD+S   + 
Sbjct: 206 ILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 6e-08
 Identities = 35/185 (18%), Positives = 74/185 (40%), Gaps = 13/185 (7%)

Query: 203 HHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFS 262
                  +  T  +P +   + +  + L     K       + S   DL  +++S+N   
Sbjct: 12  RVFLCQESKVT-EIPSD---LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 263 GELSAPLLTGCFSLWLLDLSHNSFCGQVSPK-FMNLTQLGWLSLDNNNFSGRISNGFLSS 321
             + A + +    L  + +   +    ++P+ F NL  L +L + N      + +     
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIH 126

Query: 322 ARSLQVLDISNNKLVGQIPSWIGNFSSLA----LLTVSKNLLEGNIPVQLKNLEALEILD 377
           +    +LDI +N  +  I     +F  L+    +L ++KN ++  I     N   L+ L+
Sbjct: 127 SLQKVLLDIQDNINIHTIER--NSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELN 183

Query: 378 VSENN 382
           +S+NN
Sbjct: 184 LSDNN 188

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 28/218 (12%), Positives = 67/218 (30%), Gaps = 9/218 (4%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNA-IEGPLPQCLKNLT-RLKV 58
                NL+ L +S TGI   L +         + L+++ N  I          L+    +
Sbjct: 100 FQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158

Query: 59  FGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLE 118
             ++ N +     S        +     +N  + +         S      +S       
Sbjct: 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL-PNDVFHGASGPVILDIS-RTRIHS 216

Query: 119 VETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKL 178
           + +       +L+     N      L  L+K   L    L++     +F  W  +  ++L
Sbjct: 217 LPSYGLENLKKLRARSTYN---LKKLPTLEKLVALMEASLTYPSHCCAFANW-RRQISEL 272

Query: 179 EVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRL 216
             +   +        ++ ++       + + +S++   
Sbjct: 273 HPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGF 310

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.4 bits (165), Expect = 8e-13
 Identities = 49/317 (15%), Positives = 118/317 (37%), Gaps = 32/317 (10%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
                N   +    + +  +       +L  +  L+  G  +     + ++ L  L    
Sbjct: 15  DPALANAIKIAAGKSNVTDT---VTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL-EV 119
           +  NQ++    + + +LT +  L+LS N  + +  ++ L    +++   L L +  + +V
Sbjct: 70  LKDNQITD--LAPLKNLTKITELELSGNPLKNVSAIAGL---QSIK--TLDLTSTQITDV 122

Query: 120 ETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLE 179
                L    L+VL+L    +   +  L    +L+ L + + ++    P   L + +KL 
Sbjct: 123 TPLAGLS--NLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLT 176

Query: 180 VLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEG 239
            L+  +N  +    L++  L  L  + + +N  +   P         L  + ++      
Sbjct: 177 TLKADDNKISDISPLAS--LPNLIEVHLKNNQISDVSPLAN---TSNLFIVTLTNQTIT- 230

Query: 240 SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHN--SFCGQVSPKFMNL 297
             +  +    +L   ++ +      ++   ++   +    +L+ N  SF   VS  F   
Sbjct: 231 --NQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQS 288

Query: 298 TQLGWLSLDNNNFSGRI 314
                 ++    FSG +
Sbjct: 289 VTFKNTTV---PFSGTV 302

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 51/289 (17%), Positives = 102/289 (35%), Gaps = 29/289 (10%)

Query: 49  CLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFF 108
               L          + ++       A L  +  L        G+  +  +   +NL   
Sbjct: 14  PDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGT---GVTTIEGVQYLNNLIG- 67

Query: 109 MLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFP 168
            L L +N +  +       +++  L L    L   +  +     +K+LDL+  ++    P
Sbjct: 68  -LELKDNQIT-DLAPLKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 169 AWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI--LQK 226
              L   + L+VL L  N  T    L+   L  L +L I +   +     +++ +  L K
Sbjct: 125 ---LAGLSNLQVLYLDLNQITNISPLAG--LTNLQYLSIGNAQVS-----DLTPLANLSK 174

Query: 227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF 286
           L  L    NK      S ++ + +L  + L  NQ S       L    +L+++ L++ + 
Sbjct: 175 LTTLKADDNKISD--ISPLASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQTI 229

Query: 287 CGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL 335
             Q      NL      ++        I+   +S   +    +++ N  
Sbjct: 230 TNQPVFYNNNLVV---PNVVKGPSGAPIAPATISDNGTYASPNLTWNLT 275

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 23/211 (10%)

Query: 176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI--LQKLVYLDMS 233
                +    ++ T ++  ++  LD +  L       T      +  +  L  L+ L++ 
Sbjct: 19  ANAIKIAAGKSNVTDTVTQAD--LDGITTLSAFGTGVT-----TIEGVQYLNNLIGLELK 71

Query: 234 KNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK 293
            N+    ++  +  +  +  L+LS N      +   + G  S+  LDL+           
Sbjct: 72  DNQIT-DLAP-LKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITDV--TP 124

Query: 294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLT 353
              L+ L  L LD N  +  IS   L+   +LQ L I N ++    P  + N S L  L 
Sbjct: 125 LAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179

Query: 354 VSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
              N +    P  L +L  L  + +  N +S
Sbjct: 180 ADDNKISDISP--LASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 44/235 (18%), Positives = 90/235 (38%), Gaps = 26/235 (11%)

Query: 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS 211
           +   +    + +  +           +  L       T    +    L+ L  L++  N 
Sbjct: 20  NAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIEGVQY--LNNLIGLELKDNQ 74

Query: 212 FTGRLPQNMSTI--LQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPL 269
            T     +++ +  L K+  L++S N       S+I+ ++ ++ LDL+  Q +       
Sbjct: 75  IT-----DLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQIT---DVTP 124

Query: 270 LTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLD 329
           L G  +L +L L  N            LT L +LS+ N   S  ++   L++   L  L 
Sbjct: 125 LAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLK 179

Query: 330 ISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
             +NK+    P  + +  +L  + +  N +    P  L N   L I+ ++   ++
Sbjct: 180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 47/213 (22%), Positives = 82/213 (38%), Gaps = 17/213 (7%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
             +  ++  +  + + I  S++  GI  L N+ +L L GN +    P  L NL  L    
Sbjct: 42  QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLF 96

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           +  N++     S +  L  L+ L L  N    I  ++ L +   LE   L L NN +  +
Sbjct: 97  LDENKVKDL--SSLKDLKKLKSLSLEHNG---ISDINGLVHLPQLES--LYLGNNKIT-D 148

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
                  ++L  L L +  ++  +  L     L++L LS N +        L     L+V
Sbjct: 149 ITVLSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHISDLRA---LAGLKNLDV 204

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFT 213
           L L +           S L   + +  +  S  
Sbjct: 205 LELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 51/237 (21%), Positives = 96/237 (40%), Gaps = 20/237 (8%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
              F      +L    +    +     EL ++ ++    + I+    Q ++ L  +    
Sbjct: 20  DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           ++ N+L+   P  +A+L +L +L L +N    +  LSSL +   L+   LSL +N +  +
Sbjct: 75  LNGNKLTDIKP--LANLKNLGWLFLDEN---KVKDLSSLKDLKKLK--SLSLEHNGIS-D 126

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
               +   QL+ L+L N  +   +  L +   L +L L  N++    P   L   TKL+ 
Sbjct: 127 INGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQN 182

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKF 237
           L L+ N  +    L+   L  L  L++ S       P N  + L     +  +    
Sbjct: 183 LYLSKNHISDLRALAG--LKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 45/239 (18%), Positives = 93/239 (38%), Gaps = 23/239 (9%)

Query: 25  GICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84
                   I+ NL+  ++   +      L  +     +++ +  S+   I  L ++  L 
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLF 74

Query: 85  LSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTL 144
           L+ N    +  +  L N  NL +  L L  N ++ +  +     +LK L L +  ++  +
Sbjct: 75  LNGNK---LTDIKPLANLKNLGW--LFLDENKVK-DLSSLKDLKKLKSLSLEHNGIS-DI 127

Query: 145 GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHH 204
             L     L+SL L +NK+        L   TKL+ L L +N  +  + L+   L  L +
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITV---LSRLTKLDTLSLEDNQISDIVPLAG--LTKLQN 182

Query: 205 LDISSNSFTGRLPQNMSTI--LQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQF 261
           L +S N  +     ++  +  L+ L  L++   +      +  S +     +  +    
Sbjct: 183 LYLSKNHIS-----DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 9e-09
 Identities = 46/261 (17%), Positives = 100/261 (38%), Gaps = 29/261 (11%)

Query: 128 SQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNS 187
           ++    +L+  ++        + + +  +  +++ +        +Q+   +  L L  N 
Sbjct: 24  AETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNK 79

Query: 188 FTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI--LQKLVYLDMSKNKFEGSISSSI 245
            T    L+N  L  L  L +  N        ++S++  L+KL  L +  N    S  + +
Sbjct: 80  LTDIKPLAN--LKNLGWLFLDENKVK-----DLSSLKDLKKLKSLSLEHNGI--SDINGL 130

Query: 246 SEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVS--PKFMNLTQLGWL 303
             +  L  L L  N+ + +++   L+    L  L L  N    Q+S       LT+L  L
Sbjct: 131 VHLPQLESLYLGNNKIT-DITV--LSRLTKLDTLSLEDN----QISDIVPLAGLTKLQNL 183

Query: 304 SLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNI 363
            L  N+ S  +    L+  ++L VL++ + + + +  +   N      +  +   L    
Sbjct: 184 YLSKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT-- 238

Query: 364 PVQLKNLEALEILDVSENNLS 384
           P  + +    E  +V  +   
Sbjct: 239 PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 48/222 (21%), Positives = 84/222 (37%), Gaps = 22/222 (9%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           LA  KNL  L L    +    +   + +LK L  L+LE N I       L +L +L+   
Sbjct: 86  LANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLY 140

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           + +N+++    +V++ LT L  L L DN    I  +  L   + L+   L L  N +  +
Sbjct: 141 LGNNKITD--ITVLSRLTKLDTLSLEDNQ---ISDIVPLAGLTKLQ--NLYLSKNHIS-D 192

Query: 121 TENWLPTSQLKVLHLRNCNL-NGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLE 179
                    L VL L +    N  +          ++  +   LV      ++  +   E
Sbjct: 193 LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV---TPEIISDDGDYE 249

Query: 180 VLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS--FTGRLPQN 219
              +  +    + ++S     F   + I      F GR+ Q 
Sbjct: 250 KPNVKWHLPEFTNEVS---FIFYQPVTIGKAKARFHGRVTQP 288

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 32/161 (19%), Positives = 66/161 (40%), Gaps = 14/161 (8%)

Query: 224 LQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSH 283
             + +  ++ K     +   + +E+  +  +  + +      S   +    ++  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNG 77

Query: 284 NSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWI 343
           N     + P   NL  LGWL LD N     +S+  L   + L+ L + +N +     + +
Sbjct: 78  NKL-TDIKP-LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHNGI--SDINGL 130

Query: 344 GNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
            +   L  L +  N +  +I V L  L  L+ L + +N +S
Sbjct: 131 VHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 9/206 (4%)

Query: 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSN-SKLDFLHHLDISSN 210
             ++L L    L  + P+    +   +  + ++ +     L+  +   L  + H++I + 
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 211 SFTGRLPQNMSTILQKLVYLDMSKNKFEG-SISSSISEMKDLRFLDLSRNQFSGELSAPL 269
                +  +    L  L +L +     +     + +        L+++ N +   +    
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 270 LTGCFSLWL-LDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARS-LQV 327
             G  +  L L L +N F   V     N T+L  + L+ N +   I         S   +
Sbjct: 151 FQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 328 LDISNNKLVGQIPSWIGNFSSLALLT 353
           LD+S   +   +PS       L  L 
Sbjct: 210 LDVSQTSVT-ALPS--KGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 28/214 (13%), Positives = 72/214 (33%), Gaps = 18/214 (8%)

Query: 6   NLKALDLSYTGINGSLENQGICELKNLIELNLEGN-AIEGPLPQCLKNLTRLKVFGISSN 64
           + + L L  T +  ++ +     L N+  + +  +  ++        NL+++    I + 
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 65  QLSGSLPS-VIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETEN 123
           +    +    +  L  L++L + +   +    L+ + +        ++  N  +     N
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD-NPYMTSIPVN 149

Query: 124 WLP--TSQLKVLHLRNCNL----NGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQH-NT 176
                 ++   L L N              +    L ++ L+ NK +            +
Sbjct: 150 AFQGLCNETLTLKLYNNGFTSVQGYAFNGTK----LDAVYLNKNKYLTVIDKDAFGGVYS 205

Query: 177 KLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSN 210
              +L ++  S T    L +  L+ L  L   + 
Sbjct: 206 GPSLLDVSQTSVT---ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 29/166 (17%), Positives = 61/166 (36%), Gaps = 12/166 (7%)

Query: 128 SQLKVLHLRNCNLNGTLGFLQKQ-----HDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLR 182
             +  +++     + TL  L+         +  +++ + + +       L+    L+ L 
Sbjct: 55  PNISRIYVSI---DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111

Query: 183 LTNNSFTGSLQLSN-SKLDFLHHLDISSNSFTGRLPQNMSTILQK-LVYLDMSKNKFEGS 240
           + N        L+     D    L+I+ N +   +P N    L    + L +  N F  S
Sbjct: 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-S 170

Query: 241 ISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFS-LWLLDLSHNS 285
           +         L  + L++N++   +      G +S   LLD+S  S
Sbjct: 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 11/142 (7%)

Query: 250 DLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK-FMNLTQLGWLSLDNN 308
             + L L        + +   +   ++  + +S +    Q+    F NL+++  + + N 
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 309 NFSGRISNGFLSSARSLQVLDISNNKLVGQIP--SWIGNFSSLALLTVSKNLLEGNIPVQ 366
                I    L     L+ L I N  L    P  + + +     +L ++ N    +IPV 
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 367 ----LKNLEALEILDVSENNLS 384
               L N      L +  N  +
Sbjct: 150 AFQGLCNE--TLTLKLYNNGFT 169

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 38/303 (12%), Positives = 92/303 (30%), Gaps = 47/303 (15%)

Query: 30  KNLIELNLEGNAIEGPLPQCL-----KNLTRLKVFGISSNQLSGSLPSVIASL-----TS 79
             +  L+L  N +       L          +    +S N L       +  +      +
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 80  LQYLDLSDNYF--QGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWL------PTSQLK 131
           +  L+LS N+   +    L            +L L  N    ++ +          + + 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 132 VLHLRNCNLNGT------LGFLQKQHDLKSLDLSHNKL----VGSFPAWLLQHNTKLEVL 181
            L+LR  +L                 ++ SL+L  N L          +L      +  L
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL 201

Query: 182 RLTNNSFT--GSLQLS---NSKLDFLHHLDISSNSFTGRLPQNMSTILQK---LVYLDMS 233
            L+ N        +L+   +S  + +  L++  N   G   +N+  +      L  + + 
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 234 KNKFEG-------SISSSISEMKDLRFLDLSRNQFSGE----LSAPLLTGCFSLWLLDLS 282
            +  +        ++ ++   ++ +  +D +  +        +S  +        +  L 
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLL 321

Query: 283 HNS 285
           +  
Sbjct: 322 NQC 324

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 39/302 (12%), Positives = 82/302 (27%), Gaps = 59/302 (19%)

Query: 72  SVIASLTSLQYLDLSDNYF--QGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWL---- 125
              +    +  LDLS N         L     ++      L+L  N+L  +  + L    
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75

Query: 126 --PTSQLKVLHLRNCNLNGT------LGFLQKQHDLKSLDLSHNKL----VGSFPAWLLQ 173
               + +  L+L    L+                 +  LDL  N         F      
Sbjct: 76  AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 174 HNTKLEVLRLTNNSFT--------GSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTIL- 224
               +  L L  N             L    + +   + L++  N+   +    ++  L 
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANV---NSLNLRGNNLASKNCAELAKFLA 192

Query: 225 ---QKLVYLDMSKNKFEGSISSSISEM-----KDLRFLDLSRNQFSGE---LSAPLLTGC 273
                +  LD+S N       + ++ +       +  L+L  N   G        L    
Sbjct: 193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252

Query: 274 FSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNN 333
             L  + L ++        +   L                       + + + ++D +  
Sbjct: 253 KHLQTVYLDYDIVKNMSKEQCKALGAA------------------FPNIQKIILVDKNGK 294

Query: 334 KL 335
           ++
Sbjct: 295 EI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 25/191 (13%), Positives = 54/191 (28%), Gaps = 35/191 (18%)

Query: 5   KNLKALDLSYTGINGSLENQGICEL-----KNLIELNLEGNAIE----GPLPQCLK-NLT 54
            N+ +L+L    +  S     + +       ++  L+L  N +       L         
Sbjct: 167 ANVNSLNLRGNNL-ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN 225

Query: 55  RLKVFGISSNQLSGS----LPSVIASLTSLQYLDLSDNYFQGIFY------LSSLGNHSN 104
            +    +  N L G     L  +  SL  LQ + L  +  + +         ++  N   
Sbjct: 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285

Query: 105 LEFFMLSLVNNTLEVETENWL------PTSQLKVLHLRNCNLNGTLGF------LQKQHD 152
           +   ++      +       +       + +  V  L N  L            L    +
Sbjct: 286 II--LVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDE 343

Query: 153 LKSLDLSHNKL 163
           L+    +   L
Sbjct: 344 LRESIQTCKPL 354

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 45/210 (21%), Positives = 82/210 (39%), Gaps = 24/210 (11%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
                N    +L    +    +     EL  +   N + + I+      ++  T LK   
Sbjct: 15  DPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELH 69

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           +S NQ+S    S +  LT L+ L ++ N       L +L    +     L L NN L  +
Sbjct: 70  LSHNQISD--LSPLKDLTKLEELSVNRN------RLKNLNGIPSACLSRLFLDNNELR-D 120

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
           T++ +    L++L +RN  L  ++  L     L+ LDL  N++  +     L    K+  
Sbjct: 121 TDSLIHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEITNTGG---LTRLKKVNW 176

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSN 210
           + LT        +  N  + +   L I++ 
Sbjct: 177 IDLTGQ------KCVNEPVKYQPELYITNT 200

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.1 bits (141), Expect = 8e-10
 Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 25  GICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84
               L N ++ NL   ++   +    K L+ ++ F   ++ +     + +   T+L+ L 
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 85  LSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTL 144
           LS N    I  LS L + + LE   LS+  N L+      +P++ L  L L N  L    
Sbjct: 70  LSHNQ---ISDLSPLKDLTKLE--ELSVNRNRLKNLNG--IPSACLSRLFLDNNELR-DT 121

Query: 145 GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHH 204
             L    +L+ L + +NKL        L   +KLEVL L  N  T +  L+   L  ++ 
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSIVM---LGFLSKLEVLDLHGNEITNTGGLTR--LKKVNW 176

Query: 205 LDISSNSFT 213
           +D++     
Sbjct: 177 IDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 16/197 (8%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
             +   ++  +   + I  SL    +    NL EL+L  N I    P  LK+LT+L+   
Sbjct: 37  QKELSGVQNFNGDNSNIQ-SLAG--MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           ++ N+L             L  L L +N    +    SL +  NLE   LS+ NN L+  
Sbjct: 92  VNRNRLKNLNGI---PSACLSRLFLDNNE---LRDTDSLIHLKNLEI--LSIRNNKLK-S 142

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
                  S+L+VL L    +    G L +   +  +DL+  K V + P            
Sbjct: 143 IVMLGFLSKLEVLDLHGNEIT-NTGGLTRLKKVNWIDLTGQKCV-NEPVKYQPELYITNT 200

Query: 181 LRLTNNSFTGSLQLSNS 197
           ++  +  +     +SN 
Sbjct: 201 VKDPDGRWISPYYISNG 217

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 40/219 (18%), Positives = 81/219 (36%), Gaps = 17/219 (7%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           +  F NLK L LS+  I+  L    + +L  L EL++  N ++         L+RL    
Sbjct: 59  MQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLF--- 112

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           + +N+L       +  L +L+ L + +N    +  +  LG  S LE  +L L  N +   
Sbjct: 113 LDNNELRD--TDSLIHLKNLEILSIRNNK---LKSIVMLGFLSKLE--VLDLHGNEIT-N 164

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
           T       ++  + L           ++ Q +L   +   +        + + +      
Sbjct: 165 TGGLTRLKKVNWIDLTGQKC--VNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVD 222

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQN 219
             +       + ++S  K     ++  +   F G + Q 
Sbjct: 223 GCVLWELPVYTDEVS-YKFSEYINVGETEAIFDGTVTQP 260

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 19/163 (11%)

Query: 224 LQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSH 283
           L   V  ++ K     +   S  E+  ++  +   +      S   +    +L  L LSH
Sbjct: 18  LANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKELHLSH 72

Query: 284 NSFCGQVS--PKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPS 341
           N    Q+S      +LT+L  LS++ N    R+ N     +  L  L + NN+L  +   
Sbjct: 73  N----QISDLSPLKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNNEL--RDTD 122

Query: 342 WIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
            + +  +L +L++  N L+ +I   L  L  LE+LD+  N ++
Sbjct: 123 SLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 18/188 (9%)

Query: 197 SKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDL 256
             L      ++   S T  + Q     L  +   +   +  + S++  +    +L+ L L
Sbjct: 16  PGLANAVKQNLGKQSVTDLVSQKE---LSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHL 70

Query: 257 SRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISN 316
           S NQ S +LS   L     L  L ++ N      +   +    L  L LDNN       +
Sbjct: 71  SHNQIS-DLSP--LKDLTKLEELSVNRNRL---KNLNGIPSACLSRLFLDNNELR-DTDS 123

Query: 317 GFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEIL 376
             L   ++L++L I NNKL   +   +G  S L +L +  N +       L  L+ +  +
Sbjct: 124 --LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWI 177

Query: 377 DVSENNLS 384
           D++     
Sbjct: 178 DLTGQKCV 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 49/204 (24%), Positives = 74/204 (36%), Gaps = 17/204 (8%)

Query: 153 LKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSF 212
              ++     L  + P  L        +L L+ N        +      L  L++     
Sbjct: 12  HLEVNCDKRNL-TALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 213 TGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTG 272
           T +L   +   L  L  LD+S N+ + S+      +  L  LD+S N+ +  L    L G
Sbjct: 68  T-KLQ--VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRG 122

Query: 273 CFSLWLLDLSHNSFCGQVSPK--FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDI 330
              L  L L  N    +  P        +L  LSL NNN +  +  G L+   +L  L +
Sbjct: 123 LGELQELYLKGNEL--KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLL 179

Query: 331 SNNKLVGQIPSWIGNFSSLALLTV 354
             N L   IP   G F S  L   
Sbjct: 180 QENSLYT-IPK--GFFGSHLLPFA 200

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 44/212 (20%), Positives = 67/212 (31%), Gaps = 43/212 (20%)

Query: 54  TRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLV 113
               +  +S N L     + +   T L  L+L          L+ L     L        
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA------ELTKLQVDGTL-------- 76

Query: 114 NNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQ 173
                           L  L L +  L       Q    L  LD+S N+L  S P   L+
Sbjct: 77  --------------PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALR 121

Query: 174 HNTKLEVLRLTNNSFTGSLQLSN------SKLDFLHHLDISSNSFTGRLPQNMSTILQKL 227
              +L+ L L  N      +L        +    L  L +++N+ T  LP  +   L+ L
Sbjct: 122 GLGELQELYLKGN------ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENL 174

Query: 228 VYLDMSKNKFEGSISSSISEMKDLRFLDLSRN 259
             L + +N    +I         L F  L  N
Sbjct: 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 45/208 (21%), Positives = 62/208 (29%), Gaps = 54/208 (25%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
                 L           + Q    L  L  L+L  N ++  LP   + L  L V  +S 
Sbjct: 51  LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSF 109

Query: 64  NQLSGSLPS-VIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETE 122
           N+L+ SLP   +  L  LQ L L  N                                  
Sbjct: 110 NRLT-SLPLGALRGLGELQELYLKGN---------------------------------- 134

Query: 123 NWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLR 182
                 +LK L           G L     L+ L L++N L    PA LL     L+ L 
Sbjct: 135 ------ELKTLP---------PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL 178

Query: 183 LTNNSFTGSLQLSNSKLDFLHHLDISSN 210
           L  NS   ++         L    +  N
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 63/373 (16%), Positives = 118/373 (31%), Gaps = 46/373 (12%)

Query: 2   AKFKNLKALDLSYTGINGSLENQGICEL----KNLIELNLEGNAIE-------GPLPQCL 50
           A+  +L+ L L            G+  +    + +  L +E ++           L Q  
Sbjct: 135 ARADDLETLKLDKCS---GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191

Query: 51  KNLTRLKVFGISSNQLS-GSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFM 109
            +L  L  +     ++S   L ++  +  SL  + + D   + +  +      +NLE F 
Sbjct: 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF--EILELVGFFKAAANLEEFC 249

Query: 110 LSLVNNTLEV--ETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSF 167
              +N  + +  +  N +   +L  L L     N           ++ LDL +  L    
Sbjct: 250 GGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED 309

Query: 168 PAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI---- 223
              L+Q    LEVL   N      L++       L  L I   +    +      +    
Sbjct: 310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369

Query: 224 -------LQKLVYLDMSKNKFE----GSISSSISEMKDLRFLDLSR-----NQFSGELSA 267
                   Q+L Y+ +  +        SI + +  + D R + L R     +        
Sbjct: 370 LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429

Query: 268 PLLTGCFSLWLLDLSHNSFCGQVSPKFM-----NLTQLGWLSLDNNNFSGRISNGFLSSA 322
            LL GC  L           G ++   +         + W+ L     S      F    
Sbjct: 430 SLLIGCKKLRRFAFYLR--QGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC 487

Query: 323 RSLQVLDISNNKL 335
            +LQ L++     
Sbjct: 488 PNLQKLEMRGCCF 500

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 59/405 (14%), Positives = 121/405 (29%), Gaps = 51/405 (12%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
             +F NL++L L                + NLI  N  G      + +   NL +LK   
Sbjct: 69  SRRFPNLRSLKLKGK---------PRAAMFNLIPENWGGYVTPW-VTEISNNLRQLKSVH 118

Query: 61  ISSNQLSGSLPSVIAS--LTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLE 118
                +S      +A      L+ L L          L S+  H       L +  ++  
Sbjct: 119 FRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRK-IKTLLMEESSFS 177

Query: 119 VETENWLPT-----SQLKVLHLRNCNLN-----GTLGFLQKQHDLKSLDLSHNKLVGSFP 168
            +   WL       + L+VL+                  +    L S+ +   +++    
Sbjct: 178 EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL-- 235

Query: 169 AWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLP-QNMSTILQKL 227
               +    LE     + +    +      L F   L     S+ G      +     ++
Sbjct: 236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI 295

Query: 228 VYLDMSKNKFEG-SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF 286
             LD+     E     + I +  +L  L+  RN         L   C  L  L +   + 
Sbjct: 296 RKLDLLYALLETEDHCTLIQKCPNLEVLET-RNVIGDRGLEVLAQYCKQLKRLRIERGAD 354

Query: 287 CGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL----VGQIPSW 342
              +  +   ++Q G ++L                 + L+ + +  + +    +  I ++
Sbjct: 355 EQGMEDEEGLVSQRGLIAL-------------AQGCQELEYMAVYVSDITNESLESIGTY 401

Query: 343 IGNFSSLALLTVSKNLLEGNIPVQ------LKNLEALEILDVSEN 381
           + N     L+ + +     ++P+       L   + L        
Sbjct: 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 51/196 (26%), Positives = 79/196 (40%), Gaps = 21/196 (10%)

Query: 2   AKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGI 61
             F  L+ LDLS   I  ++E+     L +L  L L GN I+         L+ L+    
Sbjct: 49  FSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 62  SSNQLSGSLPSVIAS-LTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
               L+ SL +     L +L+ L+++ N  Q         N +NLE   L L +N ++  
Sbjct: 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH--LDLSSNKIQS- 163

Query: 121 TENWLPTSQLKVLH-LRNCNLNGTLGFLQKQH---------DLKSLDLSHNKLVGSFPAW 170
               +  + L+VLH +   NL+  L                 LK L L  N+L  S P  
Sbjct: 164 ----IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDG 218

Query: 171 LLQHNTKLEVLRLTNN 186
           +    T L+ + L  N
Sbjct: 219 IFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.4 bits (142), Expect = 7e-10
 Identities = 54/231 (23%), Positives = 74/231 (32%), Gaps = 40/231 (17%)

Query: 62  SSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVET 121
           S N L         S   LQ LDLS    Q                        T+E   
Sbjct: 36  SFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------------------------TIEDGA 71

Query: 122 ENWLPTSQLKVLHLRNCNLNGTL--GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLE 179
              L    L  L L   N   +L  G       L+ L      L  S   + + H   L+
Sbjct: 72  YQSLS--HLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLK 127

Query: 180 VLRLTNNSFTGSLQLSN--SKLDFLHHLDISSNSFTGRLPQNMSTILQKLVY----LDMS 233
            L + +N    S +L    S L  L HLD+SSN     +      +L ++      LD+S
Sbjct: 128 ELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLS 185

Query: 234 KNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHN 284
            N     I     +   L+ L L  NQ    +   +     SL  + L  N
Sbjct: 186 LNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.1 bits (141), Expect = 8e-10
 Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 22/192 (11%)

Query: 153 LKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSN------SKLDFLHHLD 206
           L+ LDLS  ++  +      Q  + L  L LT N       + +      S L  L  L 
Sbjct: 54  LQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGN------PIQSLALGAFSGLSSLQKLV 106

Query: 207 ISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSI-SEMKDLRFLDLSRNQFSGEL 265
               +    L       L+ L  L+++ N  +        S + +L  LDLS N+    +
Sbjct: 107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SI 164

Query: 266 SAPLLTGCFSL----WLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSS 321
               L     +      LDLS N     + P      +L  L+LD N     + +G    
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDR 222

Query: 322 ARSLQVLDISNN 333
             SLQ + +  N
Sbjct: 223 LTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 13/188 (6%)

Query: 204 HLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSI-SEMKDLRFLDLSRNQFS 262
           +LD+S N     L         +L  LD+S+ + + +I       +  L  L L+ N   
Sbjct: 32  NLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 263 GELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSA 322
             L+    +G  SL  L     +     +    +L  L  L++ +N         + S+ 
Sbjct: 90  -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 323 RSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE------GNIPVQLKNLEALEIL 376
            +L+ LD+S+NK+   I     +   L  + +    L+        I         L+ L
Sbjct: 149 TNLEHLDLSSNKIQ-SIYC--TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKEL 205

Query: 377 DVSENNLS 384
            +  N L 
Sbjct: 206 ALDTNQLK 213

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.8 bits (144), Expect = 6e-10
 Identities = 52/279 (18%), Positives = 95/279 (34%), Gaps = 43/279 (15%)

Query: 28  ELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSD 87
              +  E  L  +  E    +      +L    +S  + +  L S + S   LQ L+  +
Sbjct: 324 GSDSQKECVLLKDRPEC-WCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPEN 381

Query: 88  NYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFL 147
                   L+ +     L+  +            +   P     +  LR+  L       
Sbjct: 382 K----WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK 437

Query: 148 QKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDI 207
            +  D++ L L+H  L            T L  L                +L  + HLD+
Sbjct: 438 MEYADVRVLHLAHKDL------------TVLCHL---------------EQLLLVTHLDL 470

Query: 208 SSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSA 267
           S N     LP  ++  L+ L  L  S N  E ++   ++ +  L+ L L  N+     + 
Sbjct: 471 SHNRLR-ALPPALAA-LRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAI 526

Query: 268 PLLTGCFSLWLLDLSHNSFC------GQVSPKFMNLTQL 300
             L  C  L LL+L  NS C       +++    +++ +
Sbjct: 527 QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.7 bits (136), Expect = 6e-09
 Identities = 49/271 (18%), Positives = 84/271 (30%), Gaps = 36/271 (13%)

Query: 114 NNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQ 173
                     W  +   K   L                 L   +LS  K         L+
Sbjct: 312 QLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQ--SELE 369

Query: 174 HNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMS 233
              +L+ L   N     ++ L    LD L +   +   F+       +    +  YLD  
Sbjct: 370 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL----KAVDPMRAAYLDDL 425

Query: 234 KNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK 293
           ++KF    S    E  D+R L L+    +       L     +  LDLSHN     + P 
Sbjct: 426 RSKFLLENSVLKMEYADVRVLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLR-ALPPA 481

Query: 294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLT 353
              L  L  L   +N     +    +++   LQ L + NN+        +   +++    
Sbjct: 482 LAALRCLEVLQASDNALE-NVDG--VANLPRLQELLLCNNR--------LQQSAAIQ--- 527

Query: 354 VSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
                        L +   L +L++  N+L 
Sbjct: 528 ------------PLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.4 bits (130), Expect = 3e-08
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 8/115 (6%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
             ++ +++ L L++  +   L +  + +L  +  L+L  N +   LP  L  L  L+V  
Sbjct: 437 KMEYADVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQ 492

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNN 115
            S N L  ++   +A+L  LQ L L +N  Q    +  L +   L   +L+L  N
Sbjct: 493 ASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV--LLNLQGN 543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.1 bits (143), Expect = 6e-10
 Identities = 44/186 (23%), Positives = 59/186 (31%), Gaps = 30/186 (16%)

Query: 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS 211
               LDLSHN L      W     T L  L L++N       L+           ISS +
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN------HLNF----------ISSEA 83

Query: 212 FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLT 271
           F           +  L YLD+S N          S+++ L  L L  N     +      
Sbjct: 84  FVP---------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFE 133

Query: 272 GCFSLWLLDLSHN---SFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLS-SARSLQV 327
               L  L LS N    F  ++      L +L  L L +N              A     
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 328 LDISNN 333
           L + NN
Sbjct: 194 LYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 17/163 (10%)

Query: 78  TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLE-VETENWLPTSQLKVLHLR 136
           +    LDLS N    +    +    +NL    L L +N L  + +E ++P   L+ L L 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHS--LLLSHNHLNFISSEAFVPVPNLRYLDLS 96

Query: 137 NCNL----NGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSL 192
           + +L          LQ    L+ L L +N +V        +   +L+ L L+ N  +   
Sbjct: 97  SNHLHTLDEFLFSDLQA---LEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RF 151

Query: 193 Q----LSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLD 231
                   +KL  L  LD+SSN    +LP      L   V   
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNG 193

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 7e-09
 Identities = 34/164 (20%), Positives = 56/164 (34%), Gaps = 18/164 (10%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
             +  NL +L LS+  +N  + ++    + NL  L+L  N +         +L  L+V  
Sbjct: 60  PTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQ----GIFYLSSLGNHSNLEFFMLSLVNN- 115
           + +N +     +    +  LQ L LS N        +           L    L L +N 
Sbjct: 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI--KDGNKLPKLML--LDLSSNK 174

Query: 116 --TLEVETENWLPTSQLKVLHLRN------CNLNGTLGFLQKQH 151
              L +     LP      L+L N      C L       Q + 
Sbjct: 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQ 218

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 54/340 (15%), Positives = 106/340 (31%), Gaps = 74/340 (21%)

Query: 46  LPQCLKNLTRLK---VFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNH 102
           L Q L  L   K   + G     + GS  + +A         +       IF+L+ L N 
Sbjct: 140 LRQALLELRPAKNVLIDG-----VLGSGKTWVALDV-CLSYKVQCKMDFKIFWLN-LKNC 192

Query: 103 SNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLK-SL----D 157
           ++ E  +  L     +++      +     + LR  ++   L  L K    +  L    +
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 158 LSHNKLVGSFPAWLLQHNTKLEVLRLTNN-SFTGSLQLSNSKLDFLHHLDISSNSFT--- 213
           + + K   +F       N   ++L  T     T  L  + +    L H    S + T   
Sbjct: 253 VQNAKAWNAF-------NLSCKILLTTRFKQVTDFLSAATTTHISLDHH---SMTLTPDE 302

Query: 214 -------------GRLPQNMSTILQKLV----------------YLDMSKNKFEGSISSS 244
                          LP+ + T   + +                +  ++ +K    I SS
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 245 I-----SEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMN-LT 298
           +     +E + + F  LS    S  +   LL+    +W   +             +N L 
Sbjct: 363 LNVLEPAEYRKM-FDRLSVFPPSAHIPTILLS---LIWFDVIK------SDVMVVVNKLH 412

Query: 299 QLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQ 338
           +   +       +  I + +L     L+     +  +V  
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 5e-08
 Identities = 53/355 (14%), Positives = 113/355 (31%), Gaps = 102/355 (28%)

Query: 1   LAKFKNLKALDL--SYTGIN-------GSLENQGICELKNLIELNLEGNAIEGPLPQCLK 51
           L K+ + +  DL       N             G+    N   +N +             
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD------------- 353

Query: 52  NLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQ-GIF---------YLSSL-- 99
            LT +    I S            SL  L+  +    + +  +F          LS +  
Sbjct: 354 KLTTI----IES------------SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 100 -GNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDL 158
               S++   +  L   +L VE +    T  +  ++L             K  +  +L  
Sbjct: 398 DVIKSDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLE---------LKVKLENEYAL-- 445

Query: 159 SHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFL-HHLDISSNS-----F 212
            H  +V  +       +  L    L    ++            + HHL    +      F
Sbjct: 446 -HRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-----------HIGHHLKNIEHPERMTLF 493

Query: 213 TGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLR-FLDLSRNQFSGELSAPLLT 271
              +  +   + QK+ +   + N   GSI +++ ++K  + ++  +  ++   ++A +L 
Sbjct: 494 R-MVFLDFRFLEQKIRHDSTAWNA-SGSILNTLQQLKFYKPYICDNDPKYERLVNA-ILD 550

Query: 272 GCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQ 326
             F   L  +  N  C     K+ +L ++  L  ++          F  + + +Q
Sbjct: 551 --F---LPKIEENLICS----KYTDLLRIA-LMAEDEAI-------FEEAHKQVQ 588

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 55/196 (28%), Positives = 81/196 (41%), Gaps = 33/196 (16%)

Query: 6   NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQ 65
           + K LDL    ++ SL ++    L  L  L L  N ++       K L  L+   ++ N+
Sbjct: 38  DTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 66  LSGSLPS-VIASLTSLQYLDLSDNYFQ----GIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           L  +LP  V   L +L  L L  N  +     +F   SL   + L +  LSL  N L+  
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSL---TKLTY--LSLGYNELQS- 147

Query: 121 TENWLPT------SQLKVLHLRNCNL----NGTLGFLQKQHDLKSLDLSHNKLVGSFPAW 170
               LP       + LK L L N  L     G    L +   LK+L L +N+L    P  
Sbjct: 148 ----LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE---LKTLKLDNNQLK-RVPEG 199

Query: 171 LLQHNTKLEVLRLTNN 186
                 KL++L+L  N
Sbjct: 200 AFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.9 bits (125), Expect = 9e-08
 Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 30/194 (15%)

Query: 31  NLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPS-VIASLTSLQYLDLSDNY 89
           +  +L+L+ N +     +    LT+L++  ++ N+L  +LP+ +   L +L+ L ++DN 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 90  FQ----GIF-YLSSLGNHSNLEFFMLSLVNNTLEVETENWLPT------SQLKVLHLRNC 138
            Q    G+F  L +L          L L  N L+      LP       ++L  L L   
Sbjct: 97  LQALPIGVFDQLVNLAE--------LRLDRNQLKS-----LPPRVFDSLTKLTYLSLGYN 143

Query: 139 NLNGTL--GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSN 196
            L  +L  G   K   LK L L +N+L    P       T+L+ L+L NN      + + 
Sbjct: 144 ELQ-SLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201

Query: 197 SKLDFLHHLDISSN 210
             L+ L  L +  N
Sbjct: 202 DSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 7/179 (3%)

Query: 205 LDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSI-SEMKDLRFLDLSRNQFSG 263
           LD+ SN  +  LP      L KL  L ++ NK + ++ + I  E+K+L  L ++ N+   
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ- 98

Query: 264 ELSAPLLTGCFSLWLLDLSHNSFCGQVSPK-FMNLTQLGWLSLDNNNFSGRISNGFLSSA 322
            L   +     +L  L L  N     + P+ F +LT+L +LSL  N     +  G     
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKL 156

Query: 323 RSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSEN 381
            SL+ L + NN+L           + L  L +  N L+        +LE L++L + EN
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 51/212 (24%), Positives = 82/212 (38%), Gaps = 34/212 (16%)

Query: 62  SSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVET 121
           SS +L+ ++PS I      + LDL  N    +    +    + L    L L +N L+   
Sbjct: 24  SSKKLT-AIPSNI--PADTKKLDLQSNKLSSL-PSKAFHRLTKLRL--LYLNDNKLQT-- 75

Query: 122 ENWLPT------SQLKVLHLRNCNLNGTL--GFLQKQHDLKSLDLSHNKLVGSFPAWLLQ 173
              LP         L+ L + +  L   L  G   +  +L  L L  N+L  S P  +  
Sbjct: 76  ---LPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFD 130

Query: 174 HNTKLEVLRLTNNSFTGSLQLSN------SKLDFLHHLDISSNSFTGRLPQNMSTILQKL 227
             TKL  L L  N      +L +       KL  L  L + +N    R+P+     L +L
Sbjct: 131 SLTKLTYLSLGYN------ELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTEL 183

Query: 228 VYLDMSKNKFEGSISSSISEMKDLRFLDLSRN 259
             L +  N+ +     +   ++ L+ L L  N
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 10/139 (7%)

Query: 250 DLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNN 309
           D + LDL  N+ S  L +        L LL L+ N      +  F  L  L  L + +N 
Sbjct: 38  DTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 310 FSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTV---SKNLLEGNIPVQ 366
               +  G      +L  L +  N+L   +P     F SL  LT      N L+ ++P  
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPP--RVFDSLTKLTYLSLGYNELQ-SLPKG 151

Query: 367 L-KNLEALEILDVSENNLS 384
           +   L +L+ L +  N L 
Sbjct: 152 VFDKLTSLKELRLYNNQLK 170

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 57.2 bits (138), Expect = 4e-09
 Identities = 52/301 (17%), Positives = 97/301 (32%), Gaps = 32/301 (10%)

Query: 1   LAKFKNLKALDLSY--------------TGINGSLENQGICELKNLIELNLEGNAIE--- 43
           + +F  +++++L                 G               L E+ L+   +    
Sbjct: 62  IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDC 121

Query: 44  -GPLPQCLKNLTRLKVFGISSNQLS-GSLPSVIASLTSLQYLDLSDNYFQGI--FYLSSL 99
              + +  KN   L +        S   L ++ A+  +L+ LDL ++    +   +LS  
Sbjct: 122 LELIAKSFKNFKVLVLSSCE--GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179

Query: 100 GNH-SNLEFFMLSLVNNTLEVETENWLPTS--QLKVLHLRNC-NLNGTLGFLQKQHDLKS 155
            +  ++L    +S + + +       L T    LK L L     L      LQ+   L+ 
Sbjct: 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEE 239

Query: 156 LDLSH-----NKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSN 210
           L            V S  +  L    +L  L    ++    L    S    L  L++S  
Sbjct: 240 LGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299

Query: 211 SFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLL 270
           +        +     KL  L +     +  +    S  KDLR L +  ++         L
Sbjct: 300 TVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359

Query: 271 T 271
           T
Sbjct: 360 T 360

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 62/393 (15%), Positives = 121/393 (30%), Gaps = 45/393 (11%)

Query: 1   LAKFKNLKALDLSY-TGINGSLENQGICELKNLIELNLEGNAIEGP-------LPQCLKN 52
              FKN K L LS   G +           +NL EL+L  + ++          P    +
Sbjct: 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185

Query: 53  LTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNY-FQGIFYLSSLGNHSNLEFFMLS 111
           L  L +  ++S     +L  ++    +L+ L L+     + +  L  L     LE     
Sbjct: 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL--LQRAPQLEELGTG 243

Query: 112 LVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLG------FLQKQHDLKSLDLSHNKLVG 165
                +  +  + L  +      LR  +                   L +L+LS+  +  
Sbjct: 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303

Query: 166 SFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISS---------NSFTGRL 216
                LL    KL+ L + +      L++  S    L  L +            + T + 
Sbjct: 304 YDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363

Query: 217 PQNMSTILQKLVYLDMSKNKF-EGSISSSISEMKDLRFLDLSRNQFSGELS--------- 266
             ++S    KL  +     +    ++ +      ++    L   +               
Sbjct: 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423

Query: 267 -APLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSL 325
              ++  C  L  L LS                ++  LS+     S    +  LS   SL
Sbjct: 424 FGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL 483

Query: 326 QVLDISNNKLVGQIPSWIGNFSSLALLTVSKNL 358
           + L+I +     +        + LA  +  + +
Sbjct: 484 RKLEIRDCPFGDK--------ALLANASKLETM 508

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.0 bits (127), Expect = 9e-08
 Identities = 52/370 (14%), Positives = 109/370 (29%), Gaps = 38/370 (10%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICEL----KNLIELNLEGNAIE---GPLPQCLKNL 53
            A  +NLK LDL  + ++  +    +        +L+ LN+   A E     L + +   
Sbjct: 152 AATCRNLKELDLRESDVD-DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210

Query: 54  TRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSD--NYFQGIFYLSSLGNHSNL-EFFML 110
             LK   ++       L +++     L+ L         +   Y       S   E   L
Sbjct: 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270

Query: 111 SLVNNTLEVETENWLPT-SQLKVLHLRNCNL--NGTLGFLQKQHDLKSLDLSHNKLVGSF 167
           S   + +           S+L  L+L    +     +  L +   L+ L +         
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGL 330

Query: 168 PAWLLQHNTKLEVLRLTNNSFTG----------SLQLSNSKLDFLHHLDISSNSFTGRLP 217
              L      L  LR+  +               L   +     L  +       T    
Sbjct: 331 EV-LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAAL 389

Query: 218 QNMSTILQKLVYLDMSKNKFEG-----------SISSSISEMKDLRFLDLSRNQFSGELS 266
             ++     +    +   + +               + +   KDLR L LS    + ++ 
Sbjct: 390 ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS-GLLTDKVF 448

Query: 267 APLLTGCFSLWLLDLSHNSFCGQ-VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSL 325
             + T    + +L ++        +         L  L + +  F  +      S   ++
Sbjct: 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM 508

Query: 326 QVLDISNNKL 335
           + L +S+  +
Sbjct: 509 RSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 34/267 (12%), Positives = 82/267 (30%), Gaps = 27/267 (10%)

Query: 133 LHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSL 192
           + + NC        +++   ++S++L        F                        +
Sbjct: 48  VFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGW----------GGYVYPWI 97

Query: 193 QLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKF--EGSISSSISEMKD 250
           +  +S   +L  + +     T    + ++   +    L +S  +      +++  +  ++
Sbjct: 98  EAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRN 157

Query: 251 LRFLDLSRNQF---SGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDN 307
           L+ LDL  +     SG   +       SL  L++S      +VS   +        +L +
Sbjct: 158 LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNIS--CLASEVSFSALERLVTRCPNLKS 215

Query: 308 NNFSGRISN----GFLSSARSLQVLDISNNKLVGQIPSWIG------NFSSLALLTVSKN 357
              +  +        L  A  L+ L         +   + G          L  L+   +
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275

Query: 358 LLEGNIPVQLKNLEALEILDVSENNLS 384
            +   +P        L  L++S   + 
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQ 302

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 43/286 (15%), Positives = 88/286 (30%), Gaps = 39/286 (13%)

Query: 128 SQLKVLHLRNC--NLNGTLGFLQKQHDLKSLDLSHNKL---VGSFPAWLLQHNTK-LEVL 181
              ++L                +    L+ L+L+  ++     +  A +L      L+ +
Sbjct: 47  PPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEV 106

Query: 182 RLTNNSFT--GSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQ----KLVYLDMSKN 235
            L +      G   L          L +  NS      +++  +L     ++  L +S N
Sbjct: 107 NLASCQLDPAGLRTLL-PVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN 165

Query: 236 KFEGS----ISSSISEMKDLRFLDLSRNQFS---GELSAPLLTGCFSLWLLDLSHNSF-- 286
               +    +   ++    +  L L          EL A  L     L  L++++N    
Sbjct: 166 PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225

Query: 287 --CGQVSPKFMNLTQLGWLSLDNNNFSG------RISNGFLSSARSLQVLDISNNKLVGQ 338
                ++        L  L L  N  S       R   G       + V           
Sbjct: 226 TAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA---- 281

Query: 339 IPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
               +  + S+ L  V +NL   +     ++LE L + D+ ++  +
Sbjct: 282 ----VSEYWSVILSEVQRNLNSWDRARVQRHLE-LLLRDLEDSRGA 322

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 33/226 (14%), Positives = 59/226 (26%), Gaps = 36/226 (15%)

Query: 6   NLKALDLSYTGINGSLENQGICEL----KNLIELNLEGNAIEGP----LPQCLKNLTRLK 57
            +  L LS   +  +     + E      ++  L+L    +       L   L    +L+
Sbjct: 156 QITTLRLSNNPL-TAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ 214

Query: 58  VFGISSNQLSGS----LPSVIASLTSLQYLDLSDNYFQ--GIFYLSSLG--NHSNLEFFM 109
              ++ N    +    L        SL+ L L  N     G   L  LG          +
Sbjct: 215 ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVV 274

Query: 110 LSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPA 169
                  +       L   Q  +       +   L       +L   DL  ++   +   
Sbjct: 275 SLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHL-------ELLLRDLEDSR-GATLNP 326

Query: 170 W----LLQHNTKLEVLRLTNNSFT--GSLQL-----SNSKLDFLHH 204
           W    LL+   ++  L     S                +     HH
Sbjct: 327 WRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGHHHHHH 372

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 9/132 (6%)

Query: 205 LDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSI-SEMKDLRFLDLSRNQFSG 263
           + +  N+    +P    +  +KL  +D+S N+    ++      ++ L  L L  N+ + 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 264 ELSAPLLTGCFSLWLLDLSHNSFCGQVSPK--FMNLTQLGWLSLDNNNFSGRISNGFLSS 321
           EL   L  G FSL LL L+ N           F +L  L  LSL +N     I+ G  S 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKI--NCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSP 150

Query: 322 ARSLQVLDISNN 333
            R++Q + ++ N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 37/161 (22%), Positives = 54/161 (33%), Gaps = 38/161 (23%)

Query: 34  ELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPS-VIASLTSLQYLDLSDNYFQ- 91
           E+ LE N I+   P       +L+   +S+NQ+S  L       L SL  L L  N    
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 92  ---GIFY-LSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFL 147
               +F  L SL         +L L  N             ++  L          +   
Sbjct: 95  LPKSLFEGLFSLQ--------LLLLNAN-------------KINCLR---------VDAF 124

Query: 148 QKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSF 188
           Q  H+L  L L  NKL  +           ++ + L  N F
Sbjct: 125 QDLHNLNLLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
            + +K L+ +DLS   I+  L       L++L  L L GN I        + L  L++  
Sbjct: 52  FSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGI 93
           +++N+++         L +L  L L DN  Q I
Sbjct: 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 11/111 (9%)

Query: 279 LDLSHNSFCGQVSPK-FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVG 337
           + L  N+    + P  F    +L  + L NN  S  ++       RSL  L +  NK+  
Sbjct: 37  IRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 338 QIPSWIGNFSSLALLTV---SKNLLEGNIPVQL-KNLEALEILDVSENNLS 384
           ++P     F  L  L +   + N +   + V   ++L  L +L + +N L 
Sbjct: 94  ELPK--SLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 29/156 (18%), Positives = 49/156 (31%), Gaps = 36/156 (23%)

Query: 62  SSNQLSGSLPSVIASLTSLQYLDLSDNYFQ----GIFY-LSSLGNHSNLEFFMLSLVNNT 116
             N +    P   +    L+ +DLS+N         F  L SL +        L L  N 
Sbjct: 40  EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS--------LVLYGN- 90

Query: 117 LEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNT 176
                       ++  L              +    L+ L L+ NK+         Q   
Sbjct: 91  ------------KITELPK---------SLFEGLFSLQLLLLNANKIN-CLRVDAFQDLH 128

Query: 177 KLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSF 212
            L +L L +N      + + S L  +  + ++ N F
Sbjct: 129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 4/113 (3%)

Query: 3   KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGIS 62
              ++K L L  +  N         E + L  L+     +       L  L +LK   +S
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72

Query: 63  SNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNN 115
            N++SG L  +     +L +L+LS N  + +  +  L    NL+   L L N 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS--LDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
             +F+ L+ L     G+  S+ N  + +L  L +L L  N + G L    +    L    
Sbjct: 38  TDEFEELEFLSTINVGLT-SIAN--LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94

Query: 61  ISSNQLSG-SLPSVIASLTSLQYLDLSDN 88
           +S N++   S    +  L +L+ LDL + 
Sbjct: 95  LSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 7/135 (5%)

Query: 101 NHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSH 160
             S+++  +L    +             +L+ L   N  L  ++  L K + LK L+LS 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKKLELSD 73

Query: 161 NKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSN-SKLDFLHHLDISSNSFTGRLP-- 217
           N++ G     L +    L  L L+ N       +    KL+ L  LD+ +   T  L   
Sbjct: 74  NRVSGGLE-VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDY 131

Query: 218 -QNMSTILQKLVYLD 231
            +N+  +L +L YLD
Sbjct: 132 RENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPL-PQCLKNLTRLKVF 59
           L K   LK L+LS   ++G LE        NL  LNL GN I+     + LK L  LK  
Sbjct: 60  LPKLNKLKKLELSDNRVSGGLEVLAEK-CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118

Query: 60  GISSN---QLSGSLPSVIASLTSLQYLD 84
            + +     L+    +V   L  L YLD
Sbjct: 119 DLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 226 KLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNS 285
           K + LD S++  EG +     E ++L FL       +   S   L     L  L+LS N 
Sbjct: 20  KELVLDNSRSN-EGKLEGLTDEFEELEFLSTINVGLT---SIANLPKLNKLKKLELSDNR 75

Query: 286 FCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNN 333
             G +         L  L+L  N      +   L    +L+ LD+ N 
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 4/112 (3%)

Query: 4   FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISS 63
              ++ L L     N         E  NL  L+L    +       L  L +LK   +S 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSE 80

Query: 64  NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNN 115
           N++ G L  +   L +L +L+LS N  + I  L  L     L+   L L N 
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS--LDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
            A+F NL+ L L   G+  S+ N  + +L  L +L L  N I G L    + L  L    
Sbjct: 45  TAEFVNLEFLSLINVGLI-SVSN--LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101

Query: 61  ISSNQLSGSLPSV--IASLTSLQYLDLSDN 88
           +S N+L   + ++  +  L  L+ LDL + 
Sbjct: 102 LSGNKLK-DISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 7/140 (5%)

Query: 101 NHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSH 160
             + +   +L    +              L+ L L N  L  ++  L K   LK L+LS 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELSE 80

Query: 161 NKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSN-SKLDFLHHLDISSNSFTGRLPQN 219
           N++ G     L +    L  L L+ N       L    KL+ L  LD+ +   T  L   
Sbjct: 81  NRIFGGLD-MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDY 138

Query: 220 MSTI---LQKLVYLDMSKNK 236
             ++   L +L YLD    +
Sbjct: 139 RESVFKLLPQLTYLDGYDRE 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 20/139 (14%)

Query: 132 VLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKL--VGSFPAWLLQHNTKLEVLRLTNNSFT 189
           VL     N     G   +  +L+ L L +  L  V + P        KL+ L L+ N   
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP-----KLPKLKKLELSENRIF 84

Query: 190 GSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI-----LQKLVYLDMSKN---KFEGSI 241
           G L +   KL  L HL++S N       +++ST+     L+ L  LD+            
Sbjct: 85  GGLDMLAEKLPNLTHLNLSGNKL-----KDISTLEPLKKLECLKSLDLFNCEVTNLNDYR 139

Query: 242 SSSISEMKDLRFLDLSRNQ 260
            S    +  L +LD    +
Sbjct: 140 ESVFKLLPQLTYLDGYDRE 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLP-QCLKNLTRLKVF 59
           L K   LK L+LS   I     +    +L NL  LNL GN ++     + LK L  LK  
Sbjct: 67  LPKLPKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125

Query: 60  GISSN---QLSGSLPSVIASLTSLQYLDLSDN 88
            + +     L+    SV   L  L YLD  D 
Sbjct: 126 DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 28/105 (26%), Positives = 38/105 (36%), Gaps = 4/105 (3%)

Query: 229 YLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCG 288
            LD  K+  +G I    +E  +L FL L         S   L     L  L+LS N   G
Sbjct: 30  VLDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKLELSENRIFG 85

Query: 289 QVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNN 333
            +      L  L  L+L  N      +   L     L+ LD+ N 
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 6/115 (5%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
                  + LDL    I   +EN G   L     ++   N I          L RLK   
Sbjct: 15  YTNAVRDRELDLRGYKIP-VIENLGAT-LDQFDAIDFSDNEIRKL--DGFPLLRRLKTLL 70

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNN 115
           +++N++      +  +L  L  L L++N    +  L  L +  +L +  L ++ N
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY--LCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 17/158 (10%)

Query: 109 MLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFP 168
           M+ L    +E   +        + L LR   +              ++D S N++     
Sbjct: 1   MVKLTAELIEQAAQYTNAVR-DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR---K 56

Query: 169 AWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI----- 223
                   +L+ L + NN      +  +  L  L  L +++NS        +  +     
Sbjct: 57  LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-----ELGDLDPLAS 111

Query: 224 LQKLVYLDMSKN---KFEGSISSSISEMKDLRFLDLSR 258
           L+ L YL + +N     +      I ++  +R LD  +
Sbjct: 112 LKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 17/125 (13%)

Query: 242 SSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLG 301
           ++  +     R LDL   +    +   L         +D S N    +    F  L +L 
Sbjct: 12  AAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLK 67

Query: 302 WLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNL--- 358
            L ++NN    RI  G   +   L  L ++NN         +     L  L   K+L   
Sbjct: 68  TLLVNNNRIC-RIGEGLDQALPDLTELILTNNS--------LVELGDLDPLASLKSLTYL 118

Query: 359 -LEGN 362
            +  N
Sbjct: 119 CILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 279 LDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQ 338
           + L+      + + ++ N  +   L L        I N   ++      +D S+N++   
Sbjct: 2   VKLTAELI--EQAAQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEI--- 54

Query: 339 IPSWIGNFSSLALLT---VSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
               +  F  L  L    V+ N +        + L  L  L ++ N+L 
Sbjct: 55  --RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLP-QCLKNLTRLKVF 59
               + LK L ++   I   +       L +L EL L  N++        L +L  L   
Sbjct: 60  FPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 118

Query: 60  GISSN---QLSGSLPSVIASLTSLQYLD 84
            I  N           VI  +  ++ LD
Sbjct: 119 CILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L+  K  K L LS   I   + +  +  ++NL  L+L  N I+  +         L+   
Sbjct: 44  LSTLKACKHLALSTNNI-EKISS--LSGMENLRILSLGRNLIKK-IENLDAVADTLEELW 99

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNN 115
           IS NQ++ SL S I  L +L+ L +S+N       +  L     LE   L L  N
Sbjct: 100 ISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE--DLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 21/156 (13%)

Query: 226 KLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNS 285
           + V L       E  + +++S +K  + L LS N    ++S+  L+G  +L +L L  N 
Sbjct: 26  EKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KISS--LSGMENLRILSLGRNL 81

Query: 286 FCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGN 345
              ++         L  L +  N  +  +S   +    +L+VL +SNNK        I N
Sbjct: 82  IK-KIENLDAVADTLEELWISYNQIA-SLSG--IEKLVNLRVLYMSNNK--------ITN 129

Query: 346 FSSLALLTVSKNL----LEGNIPVQLKNLEALEILD 377
           +  +  L     L    L GN P+     E     +
Sbjct: 130 WGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSE 164

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 6/131 (4%)

Query: 70  LPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQ 129
           + + +++L + ++L LS N  + I  LS +    NL   +LSL  N ++           
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKISSLSGM---ENLR--ILSLGRNLIKKIENLDAVADT 94

Query: 130 LKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFT 189
           L+ L +    +  +L  ++K  +L+ L +S+NK+        L    KLE L L  N   
Sbjct: 95  LEELWISYNQIA-SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153

Query: 190 GSLQLSNSKLD 200
              + +N+  +
Sbjct: 154 NDYKENNATSE 164

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 12/92 (13%)

Query: 296 NLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVS 355
            L     L+L  NN   +IS+  LS   +L++L +  N +  +I +      +L  L +S
Sbjct: 46  TLKACKHLALSTNNIE-KISS--LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWIS 101

Query: 356 KNL---LEGNIPVQLKNLEALEILDVSENNLS 384
            N    L G     ++ L  L +L +S N ++
Sbjct: 102 YNQIASLSG-----IEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 32/155 (20%), Positives = 49/155 (31%), Gaps = 16/155 (10%)

Query: 118 EVETENWLPTSQLKV--LHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLV---GSFPAWLL 172
             E    +  ++ +   LH     +      L      K L LS N +           L
Sbjct: 13  IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS------L 66

Query: 173 QHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDM 232
                L +L L  N     ++  ++  D L  L IS N     L   +   L  L  L M
Sbjct: 67  SGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEK-LVNLRVLYM 122

Query: 233 SKNKFEG-SISSSISEMKDLRFLDLSRNQFSGELS 266
           S NK         ++ +  L  L L+ N    +  
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 46/222 (20%), Positives = 86/222 (38%), Gaps = 13/222 (5%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
                 ++ +DLS + I  S  +  + +   L  L+LEG  +  P+   L   + L    
Sbjct: 89  HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148

Query: 61  ISS-NQLS-GSLPSVIASLTSLQYLDLSDNYF---QGIFYLSSLGNHSNLEFFMLSLVNN 115
           +S  +  S  +L ++++S + L  L+LS  +    + +    +  +   +    LS    
Sbjct: 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE-TITQLNLSGYRK 207

Query: 116 TLEVETENWLPTS--QLKVLHLRNCNL--NGTLGFLQKQHDLKSLDLSHNKLVGSFPAWL 171
            L+    + L      L  L L +  +  N       + + L+ L LS    +       
Sbjct: 208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267

Query: 172 LQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFT 213
           L     L+ L++      G+LQL       L HL I+ + FT
Sbjct: 268 LGEIPTLKTLQVFGIVPDGTLQLLKEA---LPHLQINCSHFT 306

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 45/236 (19%), Positives = 88/236 (37%), Gaps = 19/236 (8%)

Query: 110 LSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPA 169
           L L    L  +    L +  +         ++  L        ++ +DLS++ +  S   
Sbjct: 52  LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 111

Query: 170 WLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISS-NSFTGRLPQNMSTILQKLV 228
            +L   +KL+ L L     +  +  + +K   L  L++S  + F+    Q + +   +L 
Sbjct: 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171

Query: 229 YLDMS--KNKFEGSISSSISE-MKDLRFLDLS--RNQFSGELSAPLLTGCFSLWLLDLSH 283
            L++S   +  E  +  +++   + +  L+LS  R        + L+  C +L  LDLS 
Sbjct: 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 231

Query: 284 NSFCGQVS----PKFMNLTQLGWLSLDNNNFSGRISN---GFLSSARSLQVLDISN 332
                 +      +F  L  L  LSL        I       L    +L+ L +  
Sbjct: 232 ---SVMLKNDCFQEFFQLNYLQHLSLSRCY---DIIPETLLELGEIPTLKTLQVFG 281

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 4e-06
 Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 240 SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK-FMNLT 298
                +   ++L  L +   Q    L    L G   L  L +  +     V+P  F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTP 80

Query: 299 QLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV 336
           +L  L+L  N     +S   +    SLQ L +S N L 
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQG-LSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 6e-06
 Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 1/91 (1%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           L   +NL  L +        LE + +  L  L  L +  + +    P       RL    
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQ 91
           +S N L  SL        SLQ L LS N   
Sbjct: 87  LSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 5e-05
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 2/110 (1%)

Query: 128 SQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNS 187
                L         +L  L    +L  L + + + +       L+   +L  L +  + 
Sbjct: 8   HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 188 FTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKF 237
                  +      L  L++S N+    L       L  L  L +S N  
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 5e-05
 Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 24  QGICELKNLIELNLEGN-AIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY 82
             +   +NL EL +E    ++    + L+ L  L+   I  + L    P        L  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 83  LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL 117
           L+LS N  + +    S      L    L L  N L
Sbjct: 85  LNLSFNALESL----SWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 8e-05
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 1/92 (1%)

Query: 292 PKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLAL 351
                   L  L ++N      +    L     L+ L I  + L    P        L+ 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 352 LTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383
           L +S N LE      ++ L +L+ L +S N L
Sbjct: 85  LNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 24/184 (13%), Positives = 46/184 (25%), Gaps = 52/184 (28%)

Query: 6   NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQ 65
               L L+              +L  L ++N   N I        +  + +    ++SN+
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 66  LSGSLPS-VIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENW 124
           L  ++   +   L SL+ L L  N                                    
Sbjct: 93  LE-NVQHKMFKGLESLKTLMLRSN------------------------------------ 115

Query: 125 LPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLT 184
               ++  +                   ++ L L  N++  +           L  L L 
Sbjct: 116 ----RITCVG---------NDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLL 161

Query: 185 NNSF 188
            N F
Sbjct: 162 ANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 29/183 (15%), Positives = 64/183 (34%), Gaps = 53/183 (28%)

Query: 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS 211
               L L++N+        + +   +L  +  +NN  T                DI   +
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT----------------DIEEGA 76

Query: 212 FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSI-SEMKDLRFLDLSRNQFSGELSAPLL 270
           F G            +  + ++ N+ E ++   +   ++ L+ L L  N+          
Sbjct: 77  FEG---------ASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNR---------- 116

Query: 271 TGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDI 330
                  +  + ++S        F+ L+ +  LSL +N  +  ++ G   +  SL  L++
Sbjct: 117 -------ITCVGNDS--------FIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNL 160

Query: 331 SNN 333
             N
Sbjct: 161 LAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 24/128 (18%), Positives = 55/128 (42%), Gaps = 12/128 (9%)

Query: 230 LDMSKNKFEG-SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHN---S 285
           L ++ N+F     +    ++  LR ++ S N+ + ++      G   +  + L+ N   +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLEN 95

Query: 286 FCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGN 345
              ++   F  L  L  L L +N  +  + N       S+++L + +N++   +    G 
Sbjct: 96  VQHKM---FKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAP--GA 148

Query: 346 FSSLALLT 353
           F +L  L+
Sbjct: 149 FDTLHSLS 156

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 20/161 (12%)

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHD-LKSLDLSHNKLVGSFPAWLLQHN-TKL 178
           +        L  L ++  N    L   +K    LKSL++    L  S    +L  +   L
Sbjct: 165 SPVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNL 221

Query: 179 EVLRL----TNNSFTGSLQ-----LSNSKLDFLHHLDISSNSFTGRLPQNM--STILQKL 227
           E L L     +  F G +       S  +   L  L I        + +    S IL +L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281

Query: 228 VYLDMSKNKFEGS----ISSSISEMKDLRFLDLSRNQFSGE 264
             +D+S           +   + ++K L+F+++  N  S E
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 4e-05
 Identities = 18/129 (13%), Positives = 40/129 (31%), Gaps = 16/129 (12%)

Query: 172 LQHNTKLEVLRLTNNSFTGS--LQLSNSKLDFLHHLDI---SSNSFTGRLPQNMSTILQ- 225
            +    L+ L + +     S    +  S L  L  L +     +            +   
Sbjct: 189 KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248

Query: 226 ----KLVYLDMSKNKFEGSISSSISE---MKDLRFLDLSRNQFSGELSAPLLTGC---FS 275
                L +L +   + +  +     E   +  L  +D+S    + E +  LL        
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 276 LWLLDLSHN 284
           L  +++ +N
Sbjct: 309 LKFINMKYN 317

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 40.7 bits (94), Expect = 6e-04
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 15/104 (14%)

Query: 2   AKFKNLKALDLSYTGINGSLENQ--------GICELKNLIELNLEGNAIEGPLPQCL--- 50
           +   NL+ L L     +   +                NL  L +     +  + +     
Sbjct: 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES 275

Query: 51  KNLTRLKVFGISSNQLSGS----LPSVIASLTSLQYLDLSDNYF 90
             L +L+   IS+  L+      L   +  +  L+++++  NY 
Sbjct: 276 DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 37/158 (23%), Positives = 56/158 (35%), Gaps = 9/158 (5%)

Query: 179 EVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFE 238
           E L L +         +   L  L  L++  N     L   +   L +L  L ++ N+  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA 96

Query: 239 GSISSSI-SEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK--FM 295
            S+   +   +  L  L L  NQ    L + +      L  L L+ N    Q  P   F 
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL--QSIPAGAFD 152

Query: 296 NLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNN 333
            LT L  LSL  N     + +G       LQ + +  N
Sbjct: 153 KLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 34/169 (20%)

Query: 34  ELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPS-VIASLTSLQYLDLSDNYFQ- 91
           +L+L+   +        + LT+L    +  NQL  +L + V   LT L  L L++N    
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLAS 97

Query: 92  ---GIF-YLSSLGNHSNLEFFMLSLVNNTLEVETENWLPT------SQLKVLHLRNCNL- 140
              G+F +L+ L          L L  N L+      LP+      ++LK L L    L 
Sbjct: 98  LPLGVFDHLTQLDK--------LYLGGNQLKS-----LPSGVFDRLTKLKELRLNTNQLQ 144

Query: 141 ---NGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNN 186
               G    L     L++L LS N+L  S P        KL+ + L  N
Sbjct: 145 SIPAGAFDKLTN---LQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFGN 189

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 34 ELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPS-VIASLTSLQYLDLSDNYFQG 92
          EL L+GN     +P+ L N   L +  +S+N++S +L +   +++T L  L LS N  + 
Sbjct: 35 ELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 93 I 93
          I
Sbjct: 93 I 93

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 16/106 (15%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCL-----KNLTR 55
           L+ +K+L  +DLS   I+ +L NQ    +  L+ L L  N +     +C+       L  
Sbjct: 50  LSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL-----RCIPPRTFDGLKS 103

Query: 56  LKVFGISSNQLSGSLP-SVIASLTSLQYLDLSDNYFQ---GIFYLS 97
           L++  +  N +S  +P      L++L +L +  N       + +LS
Sbjct: 104 LRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYCDCNMQWLS 148

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFS----LWLLDLSHNS 285
           L +  N+F   +   +S  K L  +DLS N+ S      L    FS    L  L LS+N 
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-----LSNQSFSNMTQLLTLILSYNR 89

Query: 286 FCGQVSPK--FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNN 333
              +  P   F  L  L  LSL  N+ S  +  G  +   +L  L I  N
Sbjct: 90  L--RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 7/97 (7%)

Query: 3   KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGIS 62
           +  NL  L L+   +  SL N    +L NL EL L  N ++         LT L    ++
Sbjct: 83  ELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141

Query: 63  SNQLSGSLPS-VIASLTSLQYLDLSDNYFQ----GIF 94
            NQL  SLP  V   LT+L  LDLS N  Q    G+F
Sbjct: 142 HNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 3   KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGIS 62
           K  NLK L L    +  SL +    +L NL  LNL  N ++         LT L    +S
Sbjct: 107 KLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165

Query: 63  SNQLSGSLPS-VIASLTSLQYLDLSDNYFQ----GIF-YLSSL 99
            NQL  SLP  V   LT L+ L L  N  +    G+F  L+SL
Sbjct: 166 YNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 8/96 (8%)

Query: 10  LDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGS 69
           L+L    +  SL +    +L  L +L+L  N I+         LT+L +  +  N+L  S
Sbjct: 33  LELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-S 90

Query: 70  LPS-VIASLTSLQYLDLSDNYFQ----GIF-YLSSL 99
           LP+ V   LT L+ L L  N  +    GIF  L+SL
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL 126

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 34  ELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPS-VIASLTSLQYLDLSDNYFQ- 91
            L L  N I    P    +L  L+    +SN+L+ ++P+ V   LT L  LDL+DN+ + 
Sbjct: 37  RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLKS 95

Query: 92  ---GIF-YLSSL 99
              G F  L SL
Sbjct: 96  IPRGAFDNLKSL 107

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 34  ELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPS-VIASLTSLQYLDLSDNYFQ- 91
            L L  N I    P     LT+L    + +NQL+  LP+ V   LT L  L L+DN  + 
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKS 92

Query: 92  ---GIF-YLSSL 99
              G F  L SL
Sbjct: 93  IPRGAFDNLKSL 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.82
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.76
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.75
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.57
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.55
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.5
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.5
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.49
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.46
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.3
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.26
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.18
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.91
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.9
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.89
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.89
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.74
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.31
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.09
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.92
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.83
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.74
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.75
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	91.69
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	87.09

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.7e-43  Score=343.00  Aligned_cols=352  Identities=32%  Similarity=0.431  Sum_probs=263.5

Q ss_pred             hccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchh
Q 043452           27 CELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLE  106 (384)
Q Consensus        27 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  106 (384)
                      ..+++|++|++++|.+.+..|. ++++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..   .+++|+
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~  272 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQ  272 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCC
T ss_pred             ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCC
Confidence            3445555555555555543333 555566666666666555555555666666666666666555443221   555666


Q ss_pred             hhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC-ccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCC
Q 043452          107 FFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTN  185 (384)
Q Consensus       107 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  185 (384)
                      +|+++.+.............+++|++|++++|.+.+ .+..+..+++|++|++++|.+++.+|...+..+++|++|++++
T Consensus       273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~  352 (768)
T 3rgz_A          273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF  352 (768)
T ss_dssp             EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred             EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence            666655443322222222334788888888887765 6677888888888888888887777777667888888888888


Q ss_pred             CCCcCcccccCcccc-CCceEeeecCccCCCcchhHHH-hccCCcEEEccCCcCCCccchhccCCCCCcEEEeecccccc
Q 043452          186 NSFTGSLQLSNSKLD-FLHHLDISSNSFTGRLPQNMST-ILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSG  263 (384)
Q Consensus       186 ~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  263 (384)
                      |.+.+..+..+..++ +|++|++++|.+.+..+..+.. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus       353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  432 (768)
T 3rgz_A          353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG  432 (768)
T ss_dssp             SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence            887766666677776 8888888888877655555432 15679999999998887788888899999999999999875


Q ss_pred             ccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhh
Q 043452          264 ELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWI  343 (384)
Q Consensus       264 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  343 (384)
                      ..+ ..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++.++. .+..+++|+.|++++|.+.+..|.++
T Consensus       433 ~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~~  510 (768)
T 3rgz_A          433 TIP-SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWI  510 (768)
T ss_dssp             CCC-GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             ccc-HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH-HHhcCCCCCEEEccCCccCCcCChHH
Confidence            444 4456789999999999999988898999999999999999999866554 46778999999999999999999999


Q ss_pred             hccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452          344 GNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       344 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      ..+++|+.|++++|++++..|..+..+++|+.|++++|+++
T Consensus       511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            99999999999999999999999999999999999999863

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.6e-43  Score=342.16  Aligned_cols=378  Identities=31%  Similarity=0.465  Sum_probs=261.7

Q ss_pred             CCCccccEEeCcCcccccccchhhhhccccccEEecCCCc----------------------cccCCchhhhc-CCCCCE
Q 043452            2 AKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNA----------------------IEGPLPQCLKN-LTRLKV   58 (384)
Q Consensus         2 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------------------~~~~~~~~l~~-~~~L~~   58 (384)
                      ..+++|++|++++|.+++.+ +..+..+++|++|++++|.                      +.+.+|..+.. +++|++
T Consensus       220 ~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~  298 (768)
T 3rgz_A          220 GDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG  298 (768)
T ss_dssp             TTCCSCCEEECCSSCCCSCH-HHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSE
T ss_pred             ccCCCCCEEECcCCcCCCcc-cHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCE
Confidence            34455555555555554333 3444444444444444443                      33344444444 366666


Q ss_pred             EEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccCceee-------------------
Q 043452           59 FGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEV-------------------  119 (384)
Q Consensus        59 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-------------------  119 (384)
                      |++++|.+++..|..+.++++|++|++++|.+++..+...+.++++|++|+++.+......                   
T Consensus       299 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N  378 (768)
T 3rgz_A          299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN  378 (768)
T ss_dssp             EECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSS
T ss_pred             EECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCC
Confidence            7776666666666667777777777777776665555444666666776666554322110                   


Q ss_pred             -----ccCCCCC--CCCccEEEccCCCCCC-ccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCc
Q 043452          120 -----ETENWLP--TSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGS  191 (384)
Q Consensus       120 -----~~~~~~~--~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  191 (384)
                           ....+..  +++|++|++++|.+.+ ++..+..+++|+.|++++|.+++.+|..+ ..+++|++|++++|.+.+.
T Consensus       379 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~  457 (768)
T 3rgz_A          379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGE  457 (768)
T ss_dssp             EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSC
T ss_pred             CcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCc
Confidence                 0111111  4567777777776664 66677778888888888887765555443 5778888888888888777


Q ss_pred             ccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhc
Q 043452          192 LQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLT  271 (384)
Q Consensus       192 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  271 (384)
                      .+..+..+++|++|++++|.+.+..+..+.. +++|++|++++|++++..+.++..+++|++|++++|.+.+..+. .+.
T Consensus       458 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~  535 (768)
T 3rgz_A          458 IPQELMYVKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELG  535 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG-GGG
T ss_pred             CCHHHcCCCCceEEEecCCcccCcCCHHHhc-CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH-HHc
Confidence            7777778888888888888887666665544 78888888888888877788888888888888888888755443 345


Q ss_pred             cCCcceEEEccCCccccccccc----------------------------------------------------------
Q 043452          272 GCFSLWLLDLSHNSFCGQVSPK----------------------------------------------------------  293 (384)
Q Consensus       272 ~~~~L~~L~l~~~~~~~~~~~~----------------------------------------------------------  293 (384)
                      .+++|++|++++|.+.+..|..                                                          
T Consensus       536 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l  615 (768)
T 3rgz_A          536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI  615 (768)
T ss_dssp             GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCT
T ss_pred             CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence            6888888888888776544432                                                          


Q ss_pred             ------------ccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452          294 ------------FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG  361 (384)
Q Consensus       294 ------------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  361 (384)
                                  +..++.|+.|++++|.+++.++.. +..++.|+.|++++|.+++.+|..+.++++|+.|++++|++++
T Consensus       616 ~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g  694 (768)
T 3rgz_A          616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG  694 (768)
T ss_dssp             TSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             ccceecccCchhhhccccccEEECcCCcccccCCHH-HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence                        223466788888888888666654 5667888999999998888888888889999999999999888


Q ss_pred             ccccccccCCCCceEeCcCCCCC
Q 043452          362 NIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       362 ~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      .+|..+..+++|+.|++++|+++
T Consensus       695 ~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          695 RIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             CCCGGGGGCCCCSEEECCSSEEE
T ss_pred             cCChHHhCCCCCCEEECcCCccc
Confidence            88888888999999999988764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.4e-42  Score=325.35  Aligned_cols=380  Identities=20%  Similarity=0.149  Sum_probs=240.0

Q ss_pred             CCCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCc
Q 043452            1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSL   80 (384)
Q Consensus         1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L   80 (384)
                      |+++++|++|++++|.+. .+.+..|+.+++|++|++++|.+.+..|..++.+++|++|++++|.++...+..+.++++|
T Consensus        53 ~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L  131 (606)
T 3t6q_A           53 FSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL  131 (606)
T ss_dssp             STTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred             hccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence            466778888888888776 5556777888888888888887776667777777888888887777775556667777777


Q ss_pred             cEEECCCCccccccccccCCCCCchhhhhhhcccCcee------------------------------------------
Q 043452           81 QYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLE------------------------------------------  118 (384)
Q Consensus        81 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~------------------------------------------  118 (384)
                      ++|++++|.+.+... ..+..+++|++|+++.+.....                                          
T Consensus       132 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~  210 (606)
T 3t6q_A          132 ESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG  210 (606)
T ss_dssp             CEEECCSSCCCCCCC-CTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECT
T ss_pred             cEEECCCCcccccCc-ccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccC
Confidence            777777776655322 1222245555554433221100                                          


Q ss_pred             ----------------------------------------------------------eccCCCCCCCCccEEEccCCCC
Q 043452          119 ----------------------------------------------------------VETENWLPTSQLKVLHLRNCNL  140 (384)
Q Consensus       119 ----------------------------------------------------------~~~~~~~~~~~L~~L~l~~~~~  140 (384)
                                                                                .....+..+++|++|+++++.+
T Consensus       211 ~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  290 (606)
T 3t6q_A          211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL  290 (606)
T ss_dssp             TCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC
T ss_pred             CchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc
Confidence                                                                      0011244456666666666666


Q ss_pred             CCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCc-ccccCccccCCceEeeecCccCCCcc-h
Q 043452          141 NGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGS-LQLSNSKLDFLHHLDISSNSFTGRLP-Q  218 (384)
Q Consensus       141 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~  218 (384)
                      ..++..+..+++|+.|++++|.+. ..+...+..+++|++|++++|.+... ....+..+++|++|++++|.+.+... .
T Consensus       291 ~~lp~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  369 (606)
T 3t6q_A          291 SELPSGLVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN  369 (606)
T ss_dssp             SCCCSSCCSCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred             CCCChhhcccccCCEEECccCCcC-cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc
Confidence            666666666667777777766665 33333345666667776666655532 23345666777777777766653220 2


Q ss_pred             hHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccC
Q 043452          219 NMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLT  298 (384)
Q Consensus       219 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  298 (384)
                      .....+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..++
T Consensus       370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  449 (606)
T 3t6q_A          370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP  449 (606)
T ss_dssp             TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT
T ss_pred             hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC
Confidence            22233667777777777666555566666777777777777766444444456677777777777777666666666677


Q ss_pred             CcCeEeCCCCcCCccc--chhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceE
Q 043452          299 QLGWLSLDNNNFSGRI--SNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEIL  376 (384)
Q Consensus       299 ~L~~l~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  376 (384)
                      +|++|++++|.+++..  ....+..+++|+.|++++|.+++..|.++.++++|+.|++++|++++..|..+.++++| .|
T Consensus       450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L  528 (606)
T 3t6q_A          450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL  528 (606)
T ss_dssp             TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred             CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence            7777777777765321  11335556677777777777666666666777777777777777766666666666666 66


Q ss_pred             eCcCCCCC
Q 043452          377 DVSENNLS  384 (384)
Q Consensus       377 ~l~~~~~s  384 (384)
                      ++++|+++
T Consensus       529 ~L~~N~l~  536 (606)
T 3t6q_A          529 NLASNHIS  536 (606)
T ss_dssp             ECCSSCCC
T ss_pred             ECcCCccc
Confidence            66666653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.3e-41  Score=321.25  Aligned_cols=374  Identities=24%  Similarity=0.241  Sum_probs=211.1

Q ss_pred             CCCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCc
Q 043452            1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSL   80 (384)
Q Consensus         1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L   80 (384)
                      |+++++|++|++++|.++ .+++..|.++++|++|++++|.+.+..|..++++++|++|++++|.+....+..+.++++|
T Consensus        52 ~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  130 (606)
T 3vq2_A           52 FSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL  130 (606)
T ss_dssp             TTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred             ccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence            456777888888877776 5556677777788888888777776667777777777777777777775555667777777


Q ss_pred             cEEECCCCccccccccccCCCCCchhhhhhhcccCceeec--------------------------cCCCCCCCCccEEE
Q 043452           81 QYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE--------------------------TENWLPTSQLKVLH  134 (384)
Q Consensus        81 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~--------------------------~~~~~~~~~L~~L~  134 (384)
                      ++|++++|.+.+......+.++++|++|+++.+.......                          ........+|++|+
T Consensus       131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~  210 (606)
T 3vq2_A          131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT  210 (606)
T ss_dssp             CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred             CEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeee
Confidence            7777777776653323456677777777666543221100                          00001111344444


Q ss_pred             ccCC----------------------------------------------------------------------------
Q 043452          135 LRNC----------------------------------------------------------------------------  138 (384)
Q Consensus       135 l~~~----------------------------------------------------------------------------  138 (384)
                      ++++                                                                            
T Consensus       211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L  290 (606)
T 3vq2_A          211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM  290 (606)
T ss_dssp             EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEE
T ss_pred             ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEE
Confidence            4333                                                                            


Q ss_pred             -----CCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccC
Q 043452          139 -----NLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFT  213 (384)
Q Consensus       139 -----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  213 (384)
                           .+..++ .+..+++|+.|++++|.+ +.+|.  + .+++|++|++++|.....  ..+..+++|++|++++|.+.
T Consensus       291 ~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~--~-~l~~L~~L~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~  363 (606)
T 3vq2_A          291 SLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT--L-DLPFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNALS  363 (606)
T ss_dssp             EEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC--C-CCSSCCEEEEESCSSCEE--CCCCCCTTCCEEECCSSCEE
T ss_pred             EecCccchhhh-hccccccCCEEEcccccC-ccccc--C-CCCccceeeccCCcCccc--hhhccCCCCCEEECcCCccC
Confidence                 332222 334445555566665555 34442  1 555566666555533221  13445666777777776665


Q ss_pred             CCc-chhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccc
Q 043452          214 GRL-PQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSP  292 (384)
Q Consensus       214 ~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  292 (384)
                      +.. .......+++|++|++++|.+.. .+..+..+++|+.|++++|.+.+..+...+.++++|++|++++|.+.+..+.
T Consensus       364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  442 (606)
T 3vq2_A          364 FSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG  442 (606)
T ss_dssp             EEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred             CCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh
Confidence            221 12223346667777777766553 3345555666666666666655433334445556666666666655555555


Q ss_pred             cccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCC
Q 043452          293 KFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEA  372 (384)
Q Consensus       293 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  372 (384)
                      .+..+++|++|++++|.+++...+..+..+++|++|++++|.+++..|.++.++++|+.|++++|++++..|..|..+++
T Consensus       443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  522 (606)
T 3vq2_A          443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS  522 (606)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred             hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence            55555555555555555543223333444455555555555555444555555555555555555555555555555555


Q ss_pred             CceEeCcCCCC
Q 043452          373 LEILDVSENNL  383 (384)
Q Consensus       373 L~~l~l~~~~~  383 (384)
                      |+.|++++|+|
T Consensus       523 L~~L~l~~N~l  533 (606)
T 3vq2_A          523 LSTLDCSFNRI  533 (606)
T ss_dssp             CCEEECTTSCC
T ss_pred             CCEEECCCCcC
Confidence            55555555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.3e-41  Score=320.49  Aligned_cols=375  Identities=22%  Similarity=0.226  Sum_probs=249.0

Q ss_pred             ccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEE
Q 043452            5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~   84 (384)
                      +.+++|++++|.++ .+++..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.+....|..+.++++|++|+
T Consensus        33 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           33 NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence            46899999999998 67678899999999999999999988889999999999999999999988899999999999999


Q ss_pred             CCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCc-cccccccCCCC--eEeccCC
Q 043452           85 LSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGT-LGFLQKQHDLK--SLDLSHN  161 (384)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~--~L~l~~~  161 (384)
                      +++|.+++..+ ..+.++++|++|+++.+....... ..+..+++|++|+++++.+..+ +..+..+++|+  .|++++|
T Consensus       112 L~~n~i~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n  189 (606)
T 3t6q_A          112 FIQTGISSIDF-IPLHNQKTLESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN  189 (606)
T ss_dssp             CTTSCCSCGGG-SCCTTCTTCCEEECCSSCCCCCCC-CTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred             ccccCcccCCc-chhccCCcccEEECCCCcccccCc-ccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence            99999987533 458899999999999876543222 3344488999999999988873 55677778887  7777777


Q ss_pred             ccCCCcH-------------------------------------------------------------------------
Q 043452          162 KLVGSFP-------------------------------------------------------------------------  168 (384)
Q Consensus       162 ~~~~~~~-------------------------------------------------------------------------  168 (384)
                      .+.+..+                                                                         
T Consensus       190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~  269 (606)
T 3t6q_A          190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI  269 (606)
T ss_dssp             CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred             ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence            6542211                                                                         


Q ss_pred             -HHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCcc-chhcc
Q 043452          169 -AWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSI-SSSIS  246 (384)
Q Consensus       169 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~  246 (384)
                       ...++.+++|++|++++|.++ ..+..+..+++|++|++++|.+.+..+.. ...+++|++|++++|.+.... ...+.
T Consensus       270 ~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~  347 (606)
T 3t6q_A          270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGTGCLE  347 (606)
T ss_dssp             CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred             CHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCCCCcccccchhhhh
Confidence             111233344444444444444 22233444445555555555444221222 222445555555555444222 22344


Q ss_pred             CCCCCcEEEeeccccccccc-cchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccc
Q 043452          247 EMKDLRFLDLSRNQFSGELS-APLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSL  325 (384)
Q Consensus       247 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L  325 (384)
                      .+++|++|++++|.+.+... ...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+...+..+++|
T Consensus       348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  427 (606)
T 3t6q_A          348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL  427 (606)
T ss_dssp             TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred             ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence            55555555555555542211 22344566666666666666655556666666677777766666544444445566677


Q ss_pred             eEEEcCCCccccccchhhhccCCccEEEccCcccccc---cccccccCCCCceEeCcCCCCC
Q 043452          326 QVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGN---IPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       326 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      ++|++++|.+.+..+..+.++++|+.|++++|++.+.   .+..+..+++|+.|++++|.++
T Consensus       428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  489 (606)
T 3t6q_A          428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS  489 (606)
T ss_dssp             CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred             CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC
Confidence            7777777777666666677777777777777776652   2244667777777777777664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.7e-41  Score=317.01  Aligned_cols=375  Identities=22%  Similarity=0.249  Sum_probs=265.7

Q ss_pred             CCCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCc
Q 043452            1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSL   80 (384)
Q Consensus         1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L   80 (384)
                      |.++++|++|++++|.++ .+++..|+++++|++|++++|.+.+..+.+|..+++|++|+++++.++...+..+.++++|
T Consensus        48 ~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  126 (570)
T 2z63_A           48 FFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (570)
T ss_dssp             TTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred             hhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence            456777777777777776 5556667777777777777777765555667777777777777776664444456666777


Q ss_pred             cEEECCCCccccccccccCCCCCchhhhhhhcccCceee-----------------------------------------
Q 043452           81 QYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEV-----------------------------------------  119 (384)
Q Consensus        81 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-----------------------------------------  119 (384)
                      ++|++++|.+++......+.++++|++|+++.+......                                         
T Consensus       127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~  206 (570)
T 2z63_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT  206 (570)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred             cEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEe
Confidence            777777666654322244556666666666544321100                                         


Q ss_pred             -------------------------------------------------------------------ccCCCCCCCCccE
Q 043452          120 -------------------------------------------------------------------ETENWLPTSQLKV  132 (384)
Q Consensus       120 -------------------------------------------------------------------~~~~~~~~~~L~~  132 (384)
                                                                                         ....+..+++|+.
T Consensus       207 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~  286 (570)
T 2z63_A          207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS  286 (570)
T ss_dssp             EESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSE
T ss_pred             cccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccE
Confidence                                                                               0111223344455


Q ss_pred             EEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCcc
Q 043452          133 LHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSF  212 (384)
Q Consensus       133 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  212 (384)
                      |+++++.+..++..+..+ +|+.|++++|.+. .++.   ..+++|++|+++++........  ..+++|++|++++|.+
T Consensus       287 L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l  359 (570)
T 2z63_A          287 FSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGL  359 (570)
T ss_dssp             EEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCC
T ss_pred             EEecCccchhhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCcc
Confidence            555554444444444444 5555555555544 3332   2456666666666655433322  5778899999999988


Q ss_pred             CCCcc-hhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccc
Q 043452          213 TGRLP-QNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVS  291 (384)
Q Consensus       213 ~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  291 (384)
                      ..... ......+++|++|++++|.+....+. +..+++|++|++++|.+.+..+...+.++++|++|++++|.+.+..+
T Consensus       360 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  438 (570)
T 2z63_A          360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN  438 (570)
T ss_dssp             BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT
T ss_pred             CccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch
Confidence            73321 23344589999999999988755444 88899999999999998755555677889999999999999998888


Q ss_pred             ccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCC
Q 043452          292 PKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLE  371 (384)
Q Consensus       292 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  371 (384)
                      ..+..+++|++|++++|.+++...+..+..+++|++|++++|.+++..|.++..+++|+.|++++|++++..+..|.+++
T Consensus       439 ~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  518 (570)
T 2z63_A          439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT  518 (570)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence            88999999999999999987333335577789999999999999988899999999999999999999988888899999


Q ss_pred             CCceEeCcCCCCC
Q 043452          372 ALEILDVSENNLS  384 (384)
Q Consensus       372 ~L~~l~l~~~~~s  384 (384)
                      +|+.+++++|+++
T Consensus       519 ~L~~L~l~~N~~~  531 (570)
T 2z63_A          519 SLQKIWLHTNPWD  531 (570)
T ss_dssp             TCCEEECCSSCBC
T ss_pred             CCcEEEecCCccc
Confidence            9999999999985

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.6e-40  Score=309.21  Aligned_cols=373  Identities=22%  Similarity=0.259  Sum_probs=290.5

Q ss_pred             ccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEE
Q 043452            5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~   84 (384)
                      ++|++|++++|.++ .+++..|.++++|++|++++|.+.+..+.+|+.+++|++|++++|.+.+..+..+.++++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            57999999999987 56577899999999999999999977778899999999999999999977777799999999999


Q ss_pred             CCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC-ccccccccCCCCeEeccCCcc
Q 043452           85 LSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKL  163 (384)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~  163 (384)
                      +++|.+++......+.++++|++|+++.+..........+..+++|++|+++++.+.+ .+..+..+++|+.|+++++..
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence            9999988654445788999999999998775555666678889999999999998877 667788888888888888776


Q ss_pred             CCCcHHHHhhhCCCccEEEcCCCCCcCccc---cc---------------------------------------------
Q 043452          164 VGSFPAWLLQHNTKLEVLRLTNNSFTGSLQ---LS---------------------------------------------  195 (384)
Q Consensus       164 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~---------------------------------------------  195 (384)
                      . .++..++..+++|++|++++|.+.+...   ..                                             
T Consensus       185 ~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~  263 (549)
T 2z81_A          185 A-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL  263 (549)
T ss_dssp             T-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred             c-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence            5 6676666677888888888776654210   00                                             


Q ss_pred             -------------C-----------------------------ccccCCceEeeecCccCCCcchhHHHhccCCcEEEcc
Q 043452          196 -------------N-----------------------------SKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMS  233 (384)
Q Consensus       196 -------------~-----------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  233 (384)
                                   +                             ...++|+.+++++|.+. .++..++..+++|++|+++
T Consensus       264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls  342 (549)
T 2z81_A          264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS  342 (549)
T ss_dssp             ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred             cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence                         0                             01134666666666665 5677776678999999999


Q ss_pred             CCcCCCccc---hhccCCCCCcEEEeeccccccccc-cchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCc
Q 043452          234 KNKFEGSIS---SSISEMKDLRFLDLSRNQFSGELS-APLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNN  309 (384)
Q Consensus       234 ~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  309 (384)
                      +|.+++..+   ..+..+++|++|++++|.+.+... ...+..+++|++|++++|.+. ..|..+..+++|++|++++|.
T Consensus       343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~  421 (549)
T 2z81_A          343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG  421 (549)
T ss_dssp             SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC
T ss_pred             CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC
Confidence            998876543   235678899999999998863221 245677889999999998887 455566667777777777777


Q ss_pred             CCcccchhh-----------------hhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCC
Q 043452          310 FSGRISNGF-----------------LSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEA  372 (384)
Q Consensus       310 ~~~~~~~~~-----------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  372 (384)
                      ++ .++..+                 ...+++|++|++++|.++ .+|. ...+++|+.|++++|++++..+..+..+++
T Consensus       422 l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  498 (549)
T 2z81_A          422 IR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTS  498 (549)
T ss_dssp             CS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTT
T ss_pred             cc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcc
Confidence            65 222211                 125678899999999887 5565 467899999999999999888888999999


Q ss_pred             CceEeCcCCCCC
Q 043452          373 LEILDVSENNLS  384 (384)
Q Consensus       373 L~~l~l~~~~~s  384 (384)
                      |+.|++++|+++
T Consensus       499 L~~L~l~~N~~~  510 (549)
T 2z81_A          499 LQKIWLHTNPWD  510 (549)
T ss_dssp             CCEEECCSSCBC
T ss_pred             cCEEEecCCCcc
Confidence            999999999975

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.1e-41  Score=318.58  Aligned_cols=326  Identities=19%  Similarity=0.249  Sum_probs=159.4

Q ss_pred             CchhhhcCCCCCEEEeecCcccCc-----------------cCcccc--CCCCccEEECCCCccccccccccCCCCCchh
Q 043452           46 LPQCLKNLTRLKVFGISSNQLSGS-----------------LPSVIA--SLTSLQYLDLSDNYFQGIFYLSSLGNHSNLE  106 (384)
Q Consensus        46 ~~~~l~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  106 (384)
                      +|..++++++|++|+++++.+++.                 .|..+.  ++++|++|++++|.+.+..+ ..+.++++|+
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~  276 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQ  276 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCC
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCC
Confidence            444555556666666666555542                 555555  56666666666555554433 4455555566


Q ss_pred             hhhhhccc-CceeeccCCCCC------CCCccEEEccCCCCCCccc--cccccCCCCeEeccCCccCCCcHHHHhhhCCC
Q 043452          107 FFMLSLVN-NTLEVETENWLP------TSQLKVLHLRNCNLNGTLG--FLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTK  177 (384)
Q Consensus       107 ~l~l~~~~-~~~~~~~~~~~~------~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  177 (384)
                      +|+++.+. ......+..+..      +++|++|+++++.+..++.  .+..+++|+.|++++|.+.+.+|  .+..+++
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~  354 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIK  354 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEE
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCC
Confidence            55555544 221011222222      2455555555555555444  45555555555555555544444  2334455


Q ss_pred             ccEEEcCCCCCcCcccccCccccC-CceEeeecCccCCCcchhHHH--------------------------------hc
Q 043452          178 LEVLRLTNNSFTGSLQLSNSKLDF-LHHLDISSNSFTGRLPQNMST--------------------------------IL  224 (384)
Q Consensus       178 L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~--------------------------------~~  224 (384)
                      |++|++++|.+. ..+..+..+++ |++|++++|.+. .++..+..                                .+
T Consensus       355 L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~  432 (636)
T 4eco_A          355 LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG  432 (636)
T ss_dssp             ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred             CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence            555555555444 33333444444 555555555444 33332211                                12


Q ss_pred             cCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCC-------cceEEEccCCccccccccccc--
Q 043452          225 QKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCF-------SLWLLDLSHNSFCGQVSPKFM--  295 (384)
Q Consensus       225 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~--  295 (384)
                      ++|++|++++|.++......+..+++|+.|++++|.+. ..+...+....       +|++|++++|.+. ..|..+.  
T Consensus       433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~  510 (636)
T 4eco_A          433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRAT  510 (636)
T ss_dssp             CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTT
T ss_pred             CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhc
Confidence            34555555555554333333334455555555555554 33333332221       5555555555555 3333333  


Q ss_pred             ccCCcCeEeCCCCcCCcccchhhhhccccceEEEc------CCCccccccchhhhccCCccEEEccCccccccccccccc
Q 043452          296 NLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDI------SNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKN  369 (384)
Q Consensus       296 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  369 (384)
                      .+++|+.|++++|.+++ ++.. +..+++|+.|++      ++|.+.+.+|..+..+++|+.|++++|++. .+|..+. 
T Consensus       511 ~l~~L~~L~Ls~N~l~~-ip~~-~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~-  586 (636)
T 4eco_A          511 TLPYLVGIDLSYNSFSK-FPTQ-PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT-  586 (636)
T ss_dssp             TCTTCCEEECCSSCCSS-CCCG-GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC-
T ss_pred             cCCCcCEEECCCCCCCC-cChh-hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh-
Confidence            55555555555555553 3332 234455555555      234444455555555555555666555553 3444432 


Q ss_pred             CCCCceEeCcCCCC
Q 043452          370 LEALEILDVSENNL  383 (384)
Q Consensus       370 ~~~L~~l~l~~~~~  383 (384)
                       ++|+.|++++|++
T Consensus       587 -~~L~~L~Ls~N~l  599 (636)
T 4eco_A          587 -PNISVLDIKDNPN  599 (636)
T ss_dssp             -TTCCEEECCSCTT
T ss_pred             -CcCCEEECcCCCC
Confidence             5556666665554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.7e-39  Score=309.50  Aligned_cols=372  Identities=26%  Similarity=0.267  Sum_probs=300.5

Q ss_pred             CCCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccC-ccCccccCCCC
Q 043452            1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSG-SLPSVIASLTS   79 (384)
Q Consensus         1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~   79 (384)
                      |.++++|++|++++|.++ .+++..|+.+++|++|++++|.+.+..+..++++++|++|++++|.+.+ ..|..+.++++
T Consensus        76 ~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~  154 (606)
T 3vq2_A           76 WHGLHHLSNLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN  154 (606)
T ss_dssp             TTTCTTCCEEECTTCCCC-CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTT
T ss_pred             hhchhhcCEeECCCCccc-ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCC
Confidence            567899999999999997 5667889999999999999999986666789999999999999999885 46889999999


Q ss_pred             ccEEECCCCccccccccccCCC---------------------------CCchhhhhhhcccCce---------------
Q 043452           80 LQYLDLSDNYFQGIFYLSSLGN---------------------------HSNLEFFMLSLVNNTL---------------  117 (384)
Q Consensus        80 L~~L~l~~~~~~~~~~~~~~~~---------------------------~~~L~~l~l~~~~~~~---------------  117 (384)
                      |++|++++|.+++..+ ..+..                           ..+|+.++++.+....               
T Consensus       155 L~~L~Ls~n~l~~~~~-~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  233 (606)
T 3vq2_A          155 LVHVDLSYNYIQTITV-NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV  233 (606)
T ss_dssp             CCEEECCSSCCCEECT-TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEE
T ss_pred             CCEEEccCCcceecCh-hhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccc
Confidence            9999999988765432 11111                           1144444443332110               


Q ss_pred             ---------------------------------------------------------------eeccCCCCCCCCccEEE
Q 043452          118 ---------------------------------------------------------------EVETENWLPTSQLKVLH  134 (384)
Q Consensus       118 ---------------------------------------------------------------~~~~~~~~~~~~L~~L~  134 (384)
                                                                                     ......+..+++|++|+
T Consensus       234 l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~  313 (606)
T 3vq2_A          234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLS  313 (606)
T ss_dssp             EEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEE
T ss_pred             ccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEE
Confidence                                                                           00011455667999999


Q ss_pred             ccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcc--cccCccccCCceEeeecCcc
Q 043452          135 LRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSL--QLSNSKLDFLHHLDISSNSF  212 (384)
Q Consensus       135 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~  212 (384)
                      +++|.+..++. + .+++|+.|++++|...+..   .+..+++|++|++++|.+....  +..+..+++|++|++++|.+
T Consensus       314 l~~n~l~~lp~-~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  388 (606)
T 3vq2_A          314 IIRCQLKQFPT-L-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA  388 (606)
T ss_dssp             EESCCCSSCCC-C-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE
T ss_pred             cccccCccccc-C-CCCccceeeccCCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc
Confidence            99999966774 4 9999999999999654344   2458899999999999887553  56677899999999999998


Q ss_pred             CCCcchhHHHhccCCcEEEccCCcCCCccc-hhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccc-cc
Q 043452          213 TGRLPQNMSTILQKLVYLDMSKNKFEGSIS-SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCG-QV  290 (384)
Q Consensus       213 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~  290 (384)
                      . ..+..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+ .....+.++++|++|++++|.+.+ ..
T Consensus       389 ~-~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~  465 (606)
T 3vq2_A          389 I-IMSANF-MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTL  465 (606)
T ss_dssp             E-EECCCC-TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE-CCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             c-cchhhc-cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc-cchhhhcCCCCCCEEECCCCcCCCcch
Confidence            7 455444 348999999999999987665 678899999999999999874 344556789999999999999987 46


Q ss_pred             cccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccC
Q 043452          291 SPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNL  370 (384)
Q Consensus       291 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  370 (384)
                      +..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+++..|.++.++++|+.|++++|+++ ..|..+..+
T Consensus       466 ~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l  543 (606)
T 3vq2_A          466 SNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHF  543 (606)
T ss_dssp             CSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGS
T ss_pred             HHhhccCCCCCEEECCCCcCC-ccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhh
Confidence            888899999999999999998 444455778899999999999999888999999999999999999998 566669899


Q ss_pred             C-CCceEeCcCCCCC
Q 043452          371 E-ALEILDVSENNLS  384 (384)
Q Consensus       371 ~-~L~~l~l~~~~~s  384 (384)
                      + +|+.+++++|+|+
T Consensus       544 ~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          544 PKSLAFFNLTNNSVA  558 (606)
T ss_dssp             CTTCCEEECCSCCCC
T ss_pred             cccCcEEEccCCCcc
Confidence            8 5999999999984

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.7e-40  Score=313.32  Aligned_cols=344  Identities=19%  Similarity=0.214  Sum_probs=242.8

Q ss_pred             ccccccEEecCCCccccCCchhhhcCCCCCEEEeecCc-ccC-ccCccccCC------CCccEEECCCCcccccccc-cc
Q 043452           28 ELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQ-LSG-SLPSVIASL------TSLQYLDLSDNYFQGIFYL-SS   98 (384)
Q Consensus        28 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~~~------~~L~~L~l~~~~~~~~~~~-~~   98 (384)
                      ++++|++|++++|.+.+.+|..++++++|++|++++|. +++ ..|..+.++      ++|++|++++|.++ ..+. ..
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~  325 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS  325 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence            55555555555555544555555555555555555554 443 344444433      55555555555554 2221 14


Q ss_pred             CCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCC-CCeEeccCCccCCCcHHHHhh-hCC
Q 043452           99 LGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHD-LKSLDLSHNKLVGSFPAWLLQ-HNT  176 (384)
Q Consensus        99 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~-~~~  176 (384)
                      +.++++|++|+++.+.......  .+..+++|++|+++++.+..++..+..+++ |+.|++++|.++ .+|..+.. .++
T Consensus       326 l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~  402 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS  402 (636)
T ss_dssp             HTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred             hccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence            6667777777777655443333  666777788888887777777777788888 888888888877 66653321 134


Q ss_pred             CccEEEcCCCCCcCcccccCc-------cccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCC-
Q 043452          177 KLEVLRLTNNSFTGSLQLSNS-------KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEM-  248 (384)
Q Consensus       177 ~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-  248 (384)
                      +|++|++++|.+....+..+.       .+++|++|++++|.+. .++..++..+++|++|++++|.++......+... 
T Consensus       403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~  481 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN  481 (636)
T ss_dssp             CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred             ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence            788999998888877666666       7789999999999998 8888888889999999999999984433333322 


Q ss_pred             ------CCCcEEEeeccccccccccchh-ccCCcceEEEccCCcccccccccccccCCcCeEeCC------CCcCCcccc
Q 043452          249 ------KDLRFLDLSRNQFSGELSAPLL-TGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLD------NNNFSGRIS  315 (384)
Q Consensus       249 ------~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~------~~~~~~~~~  315 (384)
                            ++|+.|++++|.+. ..+..++ ..+++|++|++++|.+.+ .|..+..+++|++|+++      +|.+.+.++
T Consensus       482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p  559 (636)
T 4eco_A          482 ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP  559 (636)
T ss_dssp             EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred             ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence                  39999999999998 5665554 479999999999999997 78888899999999994      566665555


Q ss_pred             hhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccccccccc-----c---cCCCCceEeCcCCC
Q 043452          316 NGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQL-----K---NLEALEILDVSENN  382 (384)
Q Consensus       316 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~---~~~~L~~l~l~~~~  382 (384)
                      .. +..+++|++|++++|.+. .+|..+.  ++|+.|++++|++.......+     .   .+...+..++.+|+
T Consensus       560 ~~-l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~  630 (636)
T 4eco_A          560 EG-ITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD  630 (636)
T ss_dssp             TT-GGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred             HH-HhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence            44 566899999999999995 6777654  899999999999876543332     2   22234556777775

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.9e-38  Score=291.98  Aligned_cols=352  Identities=21%  Similarity=0.229  Sum_probs=262.5

Q ss_pred             ccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccC-ccCccccCCCCccEEECCCCccccccccccCCCCCchhhh
Q 043452           30 KNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSG-SLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFF  108 (384)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l  108 (384)
                      ++|++|+++++.+.+..+..++++++|++|+++++.+.. ..+..+.++++|++|++++|.+++..+ ..+.++++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET-GAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT-TTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh-hhccCcccCCEE
Confidence            456666666666665555566666666666666665542 234456666666666666666554322 345556666666


Q ss_pred             hhhcccCcee-eccCCCCCCCCccEEEccCCCCCCc-ccc-ccccCCCCeEeccCCccCCCcHHHHhh-hCCCccEEEcC
Q 043452          109 MLSLVNNTLE-VETENWLPTSQLKVLHLRNCNLNGT-LGF-LQKQHDLKSLDLSHNKLVGSFPAWLLQ-HNTKLEVLRLT  184 (384)
Q Consensus       109 ~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~  184 (384)
                      +++.+..... .....+..+++|++|+++++.+.+. +.. +..+++|++|++++|.+.+..+..+.. ..++++.++++
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~  188 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS  188 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence            6665544321 2234477788999999999998885 433 889999999999999887555544322 22789999999


Q ss_pred             CCCCcCccccc--------CccccCCceEeeecCccCCCcchhHHHhc--cCCcEEEccCCcCCCc----------cchh
Q 043452          185 NNSFTGSLQLS--------NSKLDFLHHLDISSNSFTGRLPQNMSTIL--QKLVYLDMSKNKFEGS----------ISSS  244 (384)
Q Consensus       185 ~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~----------~~~~  244 (384)
                      ++.+.......        +..+++|++|++++|.+.+..+..+....  ++|+.|++++|...+.          ....
T Consensus       189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  268 (455)
T 3v47_A          189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT  268 (455)
T ss_dssp             TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred             cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence            99887654433        33568899999999999866666665532  7899999998854321          1111


Q ss_pred             cc--CCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhcc
Q 043452          245 IS--EMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSA  322 (384)
Q Consensus       245 ~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~  322 (384)
                      +.  ..++|+++++++|.+. ......+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+.+..+..+
T Consensus       269 ~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l  346 (455)
T 3v47_A          269 FKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENL  346 (455)
T ss_dssp             TGGGTTSCCCEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGGTTC
T ss_pred             cccccccCceEEEecCcccc-ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC-CcChhHhcCc
Confidence            11  2368999999999998 445556778999999999999999888889999999999999999997 5555667788


Q ss_pred             ccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452          323 RSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       323 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      ++|++|++++|.+.+..|.++.++++|+.|++++|++++..+..+..+++|+.|++++|+|+
T Consensus       347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence            99999999999999888999999999999999999999877777899999999999999985

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-39  Score=306.85  Aligned_cols=372  Identities=22%  Similarity=0.274  Sum_probs=272.3

Q ss_pred             ccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEE
Q 043452            5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~   84 (384)
                      +++++|++++|.++ .+++..|.++++|++|++++|.+.+..+.+|+++++|++|+++++.++...+..+.++++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            46899999999997 67677899999999999999999877778899999999999999999877778999999999999


Q ss_pred             CCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCc-cccccccCCC----CeEecc
Q 043452           85 LSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGT-LGFLQKQHDL----KSLDLS  159 (384)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L----~~L~l~  159 (384)
                      +++|.+++... ..+.++++|++|+++.+.......+..+..+++|++|+++++.+..+ +..+..+++|    +.++++
T Consensus       107 L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~  185 (570)
T 2z63_A          107 AVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (570)
T ss_dssp             CTTSCCCCSTT-CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             ccccccccCCC-ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence            99999887643 34889999999999987655434456688899999999999988773 4556666666    667776


Q ss_pred             CCccCCCcHH----------------------------------------------------------------------
Q 043452          160 HNKLVGSFPA----------------------------------------------------------------------  169 (384)
Q Consensus       160 ~~~~~~~~~~----------------------------------------------------------------------  169 (384)
                      +|.+.+..+.                                                                      
T Consensus       186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~  265 (570)
T 2z63_A          186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  265 (570)
T ss_dssp             TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred             CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence            6654311111                                                                      


Q ss_pred             ----------HHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHH------------------
Q 043452          170 ----------WLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMS------------------  221 (384)
Q Consensus       170 ----------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------------  221 (384)
                                ..+..+++|++|+++++.+.. .+..+..+ +|++|++++|.+. .++....                  
T Consensus       266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~  342 (570)
T 2z63_A          266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFS  342 (570)
T ss_dssp             ETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCC
T ss_pred             cchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccc
Confidence                      112334566666666665542 22233333 4455555444443 2222100                  


Q ss_pred             -HhccCCcEEEccCCcCCCcc--chhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccc-cccccc
Q 043452          222 -TILQKLVYLDMSKNKFEGSI--SSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVS-PKFMNL  297 (384)
Q Consensus       222 -~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~  297 (384)
                       ..+++|++|++++|.++...  +..+..+++|++|++++|.+.+ .+.. +..+++|++|++++|.+.+..+ ..+..+
T Consensus       343 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  420 (570)
T 2z63_A          343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL  420 (570)
T ss_dssp             CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEE-EETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred             cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-cccc-ccccCCCCEEEccCCccccccchhhhhcC
Confidence             23556666666666665332  4556667777777777777653 2333 5667888888888887776544 456778


Q ss_pred             CCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccc-cccchhhhccCCccEEEccCcccccccccccccCCCCceE
Q 043452          298 TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV-GQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEIL  376 (384)
Q Consensus       298 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  376 (384)
                      ++|++|++++|.+. ...+..+..+++|++|++++|.+. +..|..+..+++|+.|++++|++++..|..|..+++|+.|
T Consensus       421 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          421 RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             TTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEeCcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence            88888888888887 334455667789999999999887 4678888899999999999999988778888899999999


Q ss_pred             eCcCCCCC
Q 043452          377 DVSENNLS  384 (384)
Q Consensus       377 ~l~~~~~s  384 (384)
                      ++++|.++
T Consensus       500 ~l~~n~l~  507 (570)
T 2z63_A          500 NMASNQLK  507 (570)
T ss_dssp             ECCSSCCS
T ss_pred             eCCCCcCC
Confidence            99999874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.6e-38  Score=305.24  Aligned_cols=107  Identities=23%  Similarity=0.260  Sum_probs=58.2

Q ss_pred             CCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCcc
Q 043452            2 AKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQ   81 (384)
Q Consensus         2 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~   81 (384)
                      .++++|++|++++|.++ .+.+..++++++|++|++++|.+.+..+.+|+.+++|++|++++|.+....+..+.++++|+
T Consensus        46 ~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (680)
T 1ziw_A           46 TRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI  124 (680)
T ss_dssp             GGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred             hCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence            44566666666666665 34455566666666666666666543333455666666666666655544445555555666


Q ss_pred             EEECCCCccccccccccCCCCCchhhhhh
Q 043452           82 YLDLSDNYFQGIFYLSSLGNHSNLEFFML  110 (384)
Q Consensus        82 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l  110 (384)
                      +|++++|.+++..+ ..+.++++|++|++
T Consensus       125 ~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L  152 (680)
T 1ziw_A          125 TLDLSHNGLSSTKL-GTQVQLENLQELLL  152 (680)
T ss_dssp             EEECCSSCCSCCCC-CSSSCCTTCCEEEC
T ss_pred             EEECCCCcccccCc-hhhcccccCCEEEc
Confidence            66665555544321 23334444444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-39  Score=320.25  Aligned_cols=110  Identities=19%  Similarity=0.214  Sum_probs=57.9

Q ss_pred             CCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEE
Q 043452          176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLD  255 (384)
Q Consensus       176 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  255 (384)
                      ++|+.|++++|.+....+..+..+++|+.|++++|.+. ......+..+++|++|++++|.++...+..+..+++|+.|+
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  344 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID  344 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence            45556666655555544555555666666666666555 22222223355566666666655544455555555555555


Q ss_pred             eeccccccccccchhccCCcceEEEccCCccc
Q 043452          256 LSRNQFSGELSAPLLTGCFSLWLLDLSHNSFC  287 (384)
Q Consensus       256 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  287 (384)
                      +++|.+. ..+...+.++++|++|++++|.+.
T Consensus       345 L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          345 LQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             CCSCCCC-CCCSSCSCSCCCCCEEEEETCCSC
T ss_pred             CCCCCCC-ccChhhhcCCCCCCEEECCCCCCC
Confidence            5555554 233333444555555555555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.6e-38  Score=303.45  Aligned_cols=377  Identities=25%  Similarity=0.251  Sum_probs=242.4

Q ss_pred             ccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEE
Q 043452            5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~   84 (384)
                      +++++|++++|.++ .+++..|.++++|++|++++|.+.+..+.+++++++|++|++++|.++...+..+.++++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            47899999999887 66677889999999999999998877788899999999999999988865556788999999999


Q ss_pred             CCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccc-cc--cccCCCCeEeccCC
Q 043452           85 LSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLG-FL--QKQHDLKSLDLSHN  161 (384)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~--~~~~~L~~L~l~~~  161 (384)
                      +++|.+++.. ...+.++++|++|+++.+.... .....+..+++|++|+++++.+.+.+. .+  ..+++|+.|++++|
T Consensus       104 L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          104 LMSNSIQKIK-NNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             CCSSCCCCCC-SCTTTTCTTCCEEECCSSCCSC-CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred             CCCCccCccC-hhHccccCCCCEEECCCCcccc-cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence            9999887553 3568889999999998765432 234456677788888888777666332 22  23456666666665


Q ss_pred             ccCCCcHH--------------------------------------------------HHhhhC--CCccEEEcCCCCCc
Q 043452          162 KLVGSFPA--------------------------------------------------WLLQHN--TKLEVLRLTNNSFT  189 (384)
Q Consensus       162 ~~~~~~~~--------------------------------------------------~~~~~~--~~L~~L~l~~~~~~  189 (384)
                      .+.+..+.                                                  ..+..+  ++|++|++++|.+.
T Consensus       182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~  261 (680)
T 1ziw_A          182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN  261 (680)
T ss_dssp             CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred             cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence            44322111                                                  011122  33777777777776


Q ss_pred             CcccccCccccCCceEeeecCccCCCcchhH--------------------------------HHhccCCcEEEccCCcC
Q 043452          190 GSLQLSNSKLDFLHHLDISSNSFTGRLPQNM--------------------------------STILQKLVYLDMSKNKF  237 (384)
Q Consensus       190 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--------------------------------~~~~~~L~~L~l~~~~~  237 (384)
                      ...+..+..+++|++|++++|.+.+..+..+                                +..+++|++|++++|.+
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l  341 (680)
T 1ziw_A          262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI  341 (680)
T ss_dssp             EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred             ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence            6666667777788888887777653222221                                12245555666666655


Q ss_pred             CCccchhccCCCCCcEEEeeccccccc-cccchhcc--CCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCccc
Q 043452          238 EGSISSSISEMKDLRFLDLSRNQFSGE-LSAPLLTG--CFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRI  314 (384)
Q Consensus       238 ~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  314 (384)
                      .+..+..+..+++|++|++++|.+... .....+..  .++|+.|++++|.+.+..+..+..+++|++|++++|.+++.+
T Consensus       342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  421 (680)
T 1ziw_A          342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL  421 (680)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred             CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence            555555555566666666655542211 11111111  124444444555555444555555566666666666555444


Q ss_pred             chhhhhccccceEEEcCCCccc--------------------------cccchhhhccCCccEEEccCcccccccccccc
Q 043452          315 SNGFLSSARSLQVLDISNNKLV--------------------------GQIPSWIGNFSSLALLTVSKNLLEGNIPVQLK  368 (384)
Q Consensus       315 ~~~~~~~~~~L~~L~l~~~~~~--------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  368 (384)
                      +...+..+++|++|++++|.+.                          +..|.++..+++|+.|++++|+++++.+..|.
T Consensus       422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~  501 (680)
T 1ziw_A          422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE  501 (680)
T ss_dssp             CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence            4344444455555555555443                          34566677777888888888887766666777


Q ss_pred             cCCCCceEeCcCCCCC
Q 043452          369 NLEALEILDVSENNLS  384 (384)
Q Consensus       369 ~~~~L~~l~l~~~~~s  384 (384)
                      .+++|+.|++++|.++
T Consensus       502 ~l~~L~~L~Ls~N~l~  517 (680)
T 1ziw_A          502 GLEKLEILDLQHNNLA  517 (680)
T ss_dssp             TCTTCCEEECCSSCCG
T ss_pred             cccccCEEeCCCCCcc
Confidence            8888888888888763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1e-38  Score=309.31  Aligned_cols=325  Identities=19%  Similarity=0.225  Sum_probs=174.5

Q ss_pred             CchhhhcCCCCCEEEeecCcccC-----------------ccCcccc--CCCCccEEECCCCccccccccccCCCCCchh
Q 043452           46 LPQCLKNLTRLKVFGISSNQLSG-----------------SLPSVIA--SLTSLQYLDLSDNYFQGIFYLSSLGNHSNLE  106 (384)
Q Consensus        46 ~~~~l~~~~~L~~L~l~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  106 (384)
                      +|..++++++|++|++++|.+++                 .+|..+.  ++++|++|++++|.+.+..+ ..+.++++|+
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~  518 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQ  518 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCC
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCC
Confidence            44555566666666666666554                 1555554  66666666666665555443 4455566666


Q ss_pred             hhhhhccc-CceeeccC-------CCCCCCCccEEEccCCCCCCccc--cccccCCCCeEeccCCccCCCcHHHHhhhCC
Q 043452          107 FFMLSLVN-NTLEVETE-------NWLPTSQLKVLHLRNCNLNGTLG--FLQKQHDLKSLDLSHNKLVGSFPAWLLQHNT  176 (384)
Q Consensus       107 ~l~l~~~~-~~~~~~~~-------~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  176 (384)
                      .|+++.+. ......+.       .+..+++|++|++++|.+..++.  .+..+++|+.|++++|.++ .+|  .+..++
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~  595 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNV  595 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTS
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCC
Confidence            66665554 22101111       23334456666666655555555  5555556666666655554 444  344555


Q ss_pred             CccEEEcCCCCCcCcccccCccccC-CceEeeecCccCCCcchhHHH------------------------------hcc
Q 043452          177 KLEVLRLTNNSFTGSLQLSNSKLDF-LHHLDISSNSFTGRLPQNMST------------------------------ILQ  225 (384)
Q Consensus       177 ~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~------------------------------~~~  225 (384)
                      +|+.|++++|.+. ..+..+..+++ |++|++++|.+. .++..+..                              ..+
T Consensus       596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~  673 (876)
T 4ecn_A          596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI  673 (876)
T ss_dssp             EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred             cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence            5555555555555 33444555555 555555555554 33322211                              012


Q ss_pred             CCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhcc-------CCcceEEEccCCccccccccccc--c
Q 043452          226 KLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTG-------CFSLWLLDLSHNSFCGQVSPKFM--N  296 (384)
Q Consensus       226 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~--~  296 (384)
                      +|+.|++++|.++......+..+++|+.|++++|.+. ..+...+..       +++|++|++++|.+. ..|..+.  .
T Consensus       674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~  751 (876)
T 4ecn_A          674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT  751 (876)
T ss_dssp             CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred             CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence            4555555555555333333335566666666666655 333333322       236666666666665 3444444  5


Q ss_pred             cCCcCeEeCCCCcCCcccchhhhhccccceEEEcCC------CccccccchhhhccCCccEEEccCcccccccccccccC
Q 043452          297 LTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISN------NKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNL  370 (384)
Q Consensus       297 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  370 (384)
                      +++|+.|++++|.+++ ++.. +..+++|+.|++++      |.+.+.+|..+..+++|+.|++++|++. .+|..+.  
T Consensus       752 l~~L~~L~Ls~N~L~~-lp~~-l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--  826 (876)
T 4ecn_A          752 LPYLSNMDVSYNCFSS-FPTQ-PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--  826 (876)
T ss_dssp             CTTCCEEECCSSCCSS-CCCG-GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--
T ss_pred             CCCcCEEEeCCCCCCc-cchh-hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--
Confidence            6666666666666663 3333 33556666666654      4555566666666666666666666663 4555443  


Q ss_pred             CCCceEeCcCCCC
Q 043452          371 EALEILDVSENNL  383 (384)
Q Consensus       371 ~~L~~l~l~~~~~  383 (384)
                      ++|+.|+|++|++
T Consensus       827 ~~L~~LdLs~N~l  839 (876)
T 4ecn_A          827 PQLYILDIADNPN  839 (876)
T ss_dssp             SSSCEEECCSCTT
T ss_pred             CCCCEEECCCCCC
Confidence            5666666666665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.8e-38  Score=303.56  Aligned_cols=354  Identities=18%  Similarity=0.197  Sum_probs=267.7

Q ss_pred             CCCccccEEeCcCcccccc-----------------cchhhhh--ccccccEEecCCCccccCCchhhhcCCCCCEEEee
Q 043452            2 AKFKNLKALDLSYTGINGS-----------------LENQGIC--ELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGIS   62 (384)
Q Consensus         2 ~~~~~L~~L~l~~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~   62 (384)
                      .++++|++|+|++|.+++.                 + |..+.  ++++|++|++++|.+.+.+|..++++++|++|+++
T Consensus       445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i-P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls  523 (876)
T 4ecn_A          445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE-NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA  523 (876)
T ss_dssp             GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred             hcCCCCCEEECcCCcCCCCcccccccccccccccccC-ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence            4567788888888877751                 4 34444  77888888888887777777778888888888888


Q ss_pred             cCc-ccC-ccCccccC-------CCCccEEECCCCcccccccc-ccCCCCCchhhhhhhcccCceeeccCCCCCCCCccE
Q 043452           63 SNQ-LSG-SLPSVIAS-------LTSLQYLDLSDNYFQGIFYL-SSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKV  132 (384)
Q Consensus        63 ~~~-~~~-~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~  132 (384)
                      +|. +++ ..|..+.+       +++|++|++++|.++ .++. ..+.++++|+.|+++.+... . .+ .+..+++|+.
T Consensus       524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~-lp-~~~~L~~L~~  599 (876)
T 4ecn_A          524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-H-LE-AFGTNVKLTD  599 (876)
T ss_dssp             TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-B-CC-CCCTTSEESE
T ss_pred             CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-c-ch-hhcCCCcceE
Confidence            776 664 45554443       348888888888777 3331 25778888888888877655 2 22 7778888888


Q ss_pred             EEccCCCCCCccccccccCC-CCeEeccCCccCCCcHHHHhhhC--CCccEEEcCCCCCcCccccc---Cc--cccCCce
Q 043452          133 LHLRNCNLNGTLGFLQKQHD-LKSLDLSHNKLVGSFPAWLLQHN--TKLEVLRLTNNSFTGSLQLS---NS--KLDFLHH  204 (384)
Q Consensus       133 L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~---~~--~~~~L~~  204 (384)
                      |++++|.+..++..+..+++ |+.|++++|.++ .+|..+ ...  ++|+.|++++|.+.+..+..   +.  ..++|+.
T Consensus       600 L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~-~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~  677 (876)
T 4ecn_A          600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF-NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST  677 (876)
T ss_dssp             EECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCC-CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred             EECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhh-hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence            88888888877777888888 999999888877 666433 233  34889999988886543321   22  4458999


Q ss_pred             EeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhcc-------CCCCCcEEEeeccccccccccchh-ccCCcc
Q 043452          205 LDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSIS-------EMKDLRFLDLSRNQFSGELSAPLL-TGCFSL  276 (384)
Q Consensus       205 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L  276 (384)
                      |++++|.+. .++..++..+++|+.|++++|.++......+.       ++++|+.|++++|.+. ..+..++ ..+++|
T Consensus       678 L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L  755 (876)
T 4ecn_A          678 VTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL  755 (876)
T ss_dssp             EECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC
T ss_pred             EEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc
Confidence            999999998 88888887799999999999999844333332       2339999999999998 5555554 479999


Q ss_pred             eEEEccCCcccccccccccccCCcCeEeCCC------CcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCcc
Q 043452          277 WLLDLSHNSFCGQVSPKFMNLTQLGWLSLDN------NNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLA  350 (384)
Q Consensus       277 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  350 (384)
                      +.|++++|.+.+ .|..+..+++|+.|++++      |.+.+.++.. +..+++|+.|++++|.+ +.+|..+.  ++|+
T Consensus       756 ~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~-l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~  830 (876)
T 4ecn_A          756 SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPSLIQLQIGSNDI-RKVDEKLT--PQLY  830 (876)
T ss_dssp             CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSSCC-CBCCSCCC--SSSC
T ss_pred             CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH-HhcCCCCCEEECCCCCC-CccCHhhc--CCCC
Confidence            999999999987 677888999999999976      6666555544 66789999999999999 47777654  6999


Q ss_pred             EEEccCccccccccccccc
Q 043452          351 LLTVSKNLLEGNIPVQLKN  369 (384)
Q Consensus       351 ~L~l~~~~~~~~~~~~~~~  369 (384)
                      .|+|++|++....+..+..
T Consensus       831 ~LdLs~N~l~~i~~~~~~~  849 (876)
T 4ecn_A          831 ILDIADNPNISIDVTSVCP  849 (876)
T ss_dssp             EEECCSCTTCEEECGGGHH
T ss_pred             EEECCCCCCCccChHHccc
Confidence            9999999998766666543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.8e-38  Score=294.70  Aligned_cols=366  Identities=23%  Similarity=0.250  Sum_probs=265.3

Q ss_pred             ccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEE
Q 043452            5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~   84 (384)
                      ++|++|++++|.++ .+++..|..+++|++|++++|++.+..|..|+.+++|++|++++|.++ .+|..  .+++|++|+
T Consensus        21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~   96 (520)
T 2z7x_B           21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD   96 (520)
T ss_dssp             TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred             ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence            57888888888887 565677888888999999888888766788888888899999888887 45554  788888888


Q ss_pred             CCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCc--cEEEccCCCC--CC-ccc--------------
Q 043452           85 LSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQL--KVLHLRNCNL--NG-TLG--------------  145 (384)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~-~~~--------------  145 (384)
                      +++|.+++......+.++++|++|+++.+....    ..+..+++|  ++|+++++.+  .+ .+.              
T Consensus        97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l  172 (520)
T 2z7x_B           97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF  172 (520)
T ss_dssp             CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred             ccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence            888888764333567788888888887765432    234455555  7777776655  21 111              


Q ss_pred             ------------------------------------------cccccCCCCeEeccCCccCCCcHHHHhh--hCCCccEE
Q 043452          146 ------------------------------------------FLQKQHDLKSLDLSHNKLVGSFPAWLLQ--HNTKLEVL  181 (384)
Q Consensus       146 ------------------------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L  181 (384)
                                                                .+..+++|+.|++.++.+.+..+..+..  ..++|++|
T Consensus       173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L  252 (520)
T 2z7x_B          173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF  252 (520)
T ss_dssp             CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred             ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence                                                      1233344444444444443222222211  24578888


Q ss_pred             EcCCCCCcCcccccC-----ccccCCceEeeecCccCCCcc-hhHH------------------------HhccCCcEEE
Q 043452          182 RLTNNSFTGSLQLSN-----SKLDFLHHLDISSNSFTGRLP-QNMS------------------------TILQKLVYLD  231 (384)
Q Consensus       182 ~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~-~~~~------------------------~~~~~L~~L~  231 (384)
                      ++++|.+.+..+..+     ..+++|+.++++++.+  .++ ..+.                        ..+++|++|+
T Consensus       253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  330 (520)
T 2z7x_B          253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD  330 (520)
T ss_dssp             EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred             EeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEE
Confidence            888887765555555     5566666666665554  222 1111                        3467899999


Q ss_pred             ccCCcCCCccchhccCCCCCcEEEeeccccccc-cccchhccCCcceEEEccCCcccccccc-cccccCCcCeEeCCCCc
Q 043452          232 MSKNKFEGSISSSISEMKDLRFLDLSRNQFSGE-LSAPLLTGCFSLWLLDLSHNSFCGQVSP-KFMNLTQLGWLSLDNNN  309 (384)
Q Consensus       232 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~  309 (384)
                      +++|.+++..+..+..+++|+.|++++|.+.+. .....+..+++|++|++++|.+.+..+. .+..+++|++|++++|.
T Consensus       331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~  410 (520)
T 2z7x_B          331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI  410 (520)
T ss_dssp             CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred             eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence            999999887788888999999999999998731 1224567799999999999999874444 47788999999999999


Q ss_pred             CCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452          310 FSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       310 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      +++..+..+   .++|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|+|+
T Consensus       411 l~~~~~~~l---~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          411 LTDTIFRCL---PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             CCGGGGGSC---CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCcchhhhh---cccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence            875554432   169999999999998 77887779999999999999999544445899999999999999985

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.7e-36  Score=277.79  Aligned_cols=344  Identities=28%  Similarity=0.347  Sum_probs=279.5

Q ss_pred             CccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEE
Q 043452            4 FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYL   83 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L   83 (384)
                      ++++++|++.++.+. .++  .+..+++|++|++++|.+.+ .+. +..+++|++|+++++.+....+  +.++++|++|
T Consensus        45 l~~l~~L~l~~~~i~-~l~--~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             hccccEEecCCCCCc-cCc--chhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            578999999999886 563  38889999999999999885 444 8899999999999999885544  8899999999


Q ss_pred             ECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCcc
Q 043452           84 DLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKL  163 (384)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  163 (384)
                      ++++|.+++..   .+.++++|++|+++.+.....   ..+..+++|++|+++ +...... .+..+++|+.|++++|.+
T Consensus       118 ~L~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~-~~~~~~~-~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          118 TLFNNQITDID---PLKNLTNLNRLELSSNTISDI---SALSGLTSLQQLSFG-NQVTDLK-PLANLTTLERLDISSNKV  189 (466)
T ss_dssp             ECCSSCCCCCG---GGTTCTTCSEEEEEEEEECCC---GGGTTCTTCSEEEEE-ESCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred             ECCCCCCCCCh---HHcCCCCCCEEECCCCccCCC---hhhccCCcccEeecC-CcccCch-hhccCCCCCEEECcCCcC
Confidence            99999888763   388899999999987754332   247788899999986 3444443 378899999999999988


Q ss_pred             CCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccch
Q 043452          164 VGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISS  243 (384)
Q Consensus       164 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  243 (384)
                      . .++.  +..+++|++|++++|.+....+  +..+++|++|++++|.+.+ .+ .+ ..+++|++|++++|.+.+..+ 
T Consensus       190 ~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~l-~~l~~L~~L~l~~n~l~~~~~-  260 (466)
T 1o6v_A          190 S-DISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-TL-ASLTNLTDLDLANNQISNLAP-  260 (466)
T ss_dssp             C-CCGG--GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GG-GGCTTCSEEECCSSCCCCCGG-
T ss_pred             C-CChh--hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch-hh-hcCCCCCEEECCCCccccchh-
Confidence            6 3433  5688999999999998876544  6678999999999998873 32 23 348899999999999886544 


Q ss_pred             hccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccc
Q 043452          244 SISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSAR  323 (384)
Q Consensus       244 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~  323 (384)
                       +..+++|+.|++++|.+.+..+   +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++..+   +..++
T Consensus       261 -~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~  331 (466)
T 1o6v_A          261 -LSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLT  331 (466)
T ss_dssp             -GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---GGGCT
T ss_pred             -hhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---hccCc
Confidence             7788999999999999874332   6678999999999999886544  6788999999999999885443   56779


Q ss_pred             cceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452          324 SLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       324 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      +|+.|++++|.+.+.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|+|+
T Consensus       332 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          332 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence            999999999988854  568899999999999999987766  888999999999999764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.2e-37  Score=301.77  Aligned_cols=380  Identities=23%  Similarity=0.252  Sum_probs=243.3

Q ss_pred             CCCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCcc--ccCCC
Q 043452            1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSV--IASLT   78 (384)
Q Consensus         1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~~   78 (384)
                      |..+++|++|++++|...+.+++..|.++++|++|++++|.+.+..|.+|..+++|++|++++|.+.+..+..  +.+++
T Consensus        44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~  123 (844)
T 3j0a_A           44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK  123 (844)
T ss_dssp             CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred             CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence            5678889999998886666777788888899999999988888777888888889999999888887655544  78888


Q ss_pred             CccEEECCCCccccccccccCCCCCchhhhhhhcccCceee-------------------------ccCCCCCCC-----
Q 043452           79 SLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEV-------------------------ETENWLPTS-----  128 (384)
Q Consensus        79 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-------------------------~~~~~~~~~-----  128 (384)
                      +|++|++++|.+++..+...+.++++|++|+++.+......                         ....+..++     
T Consensus       124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  203 (844)
T 3j0a_A          124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN  203 (844)
T ss_dssp             SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred             CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence            88888888888877655556788888888887765432110                         011112222     


Q ss_pred             -CccEEEccCCCCCC-ccccc------------------------------------cc--cCCCCeEeccCCccCCCcH
Q 043452          129 -QLKVLHLRNCNLNG-TLGFL------------------------------------QK--QHDLKSLDLSHNKLVGSFP  168 (384)
Q Consensus       129 -~L~~L~l~~~~~~~-~~~~~------------------------------------~~--~~~L~~L~l~~~~~~~~~~  168 (384)
                       .|+.|+++++.+.. .+..+                                    ..  .++|+.|++++|.+. .++
T Consensus       204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~  282 (844)
T 3j0a_A          204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLN  282 (844)
T ss_dssp             CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC-EEC
T ss_pred             CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc-ccC
Confidence             27777777765432 11111                                    11  256777777777665 333


Q ss_pred             HHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCC
Q 043452          169 AWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEM  248 (384)
Q Consensus       169 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  248 (384)
                      ...+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+....+..+..+
T Consensus       283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~~~~l  361 (844)
T 3j0a_A          283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF-YGLPKVAYIDLQKNHIAIIQDQTFKFL  361 (844)
T ss_dssp             SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC-SSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred             hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh-cCCCCCCEEECCCCCCCccChhhhcCC
Confidence            4445677788888888887776666677777788888888887763333333 346778888888877776666666777


Q ss_pred             CCCcEEEeeccccccccc---------------------------------------cchhccCCcceEEEccCCccccc
Q 043452          249 KDLRFLDLSRNQFSGELS---------------------------------------APLLTGCFSLWLLDLSHNSFCGQ  289 (384)
Q Consensus       249 ~~L~~L~l~~~~~~~~~~---------------------------------------~~~~~~~~~L~~L~l~~~~~~~~  289 (384)
                      ++|++|++++|.+.+...                                       ...+..+++|++|++++|.+.+.
T Consensus       362 ~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~  441 (844)
T 3j0a_A          362 EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC  441 (844)
T ss_dssp             CCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCC
T ss_pred             CCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccc
Confidence            777777777776652110                                       01122455555555555555432


Q ss_pred             ccc-cccccCCcCeEeCCCCcCCcc----cchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccc
Q 043452          290 VSP-KFMNLTQLGWLSLDNNNFSGR----ISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIP  364 (384)
Q Consensus       290 ~~~-~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  364 (384)
                      .+. .+..+++|+.|++++|.++..    .....+..+++|+.|++++|.+++..+.++.++++|+.|++++|++++..+
T Consensus       442 ~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~  521 (844)
T 3j0a_A          442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH  521 (844)
T ss_dssp             CSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCC
T ss_pred             ccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccCh
Confidence            221 223345555666655555411    111234455666667777666666666666667777777777776665544


Q ss_pred             cccccCCCCceEeCcCCCCC
Q 043452          365 VQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       365 ~~~~~~~~L~~l~l~~~~~s  384 (384)
                      ..+.  ++|+.|++++|.++
T Consensus       522 ~~~~--~~L~~L~Ls~N~l~  539 (844)
T 3j0a_A          522 NDLP--ANLEILDISRNQLL  539 (844)
T ss_dssp             CCCC--SCCCEEEEEEECCC
T ss_pred             hhhh--ccccEEECCCCcCC
Confidence            4443  56666666666553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.7e-36  Score=282.18  Aligned_cols=361  Identities=23%  Similarity=0.202  Sum_probs=270.0

Q ss_pred             cEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCC
Q 043452            8 KALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSD   87 (384)
Q Consensus         8 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~   87 (384)
                      ++|+++++.++ .+|.. +.  ++|++|++++|.+.+..+..+.++++|++|++++|.+++..|..+.++++|++|++++
T Consensus         3 ~~l~ls~n~l~-~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKD-LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS-SCCCS-CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCcc-ccccc-cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            58999999998 67543 32  8999999999999977778999999999999999999988899999999999999999


Q ss_pred             CccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCC--CeEeccCCcc--
Q 043452           88 NYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDL--KSLDLSHNKL--  163 (384)
Q Consensus        88 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--  163 (384)
                      |.++.... .   .+++|++|+++.+.......+..+..+++|++|+++++.+.+  ..+..+++|  +.|++++|.+  
T Consensus        79 N~l~~lp~-~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~  152 (520)
T 2z7x_B           79 NKLVKISC-H---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYG  152 (520)
T ss_dssp             SCCCEEEC-C---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTT
T ss_pred             CceeecCc-c---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccc
Confidence            99985422 2   899999999998776554445678889999999999998875  346667777  9999988877  


Q ss_pred             CCCcHHHHh-------------------------hhCCCccEEEcCCCC------------------------------C
Q 043452          164 VGSFPAWLL-------------------------QHNTKLEVLRLTNNS------------------------------F  188 (384)
Q Consensus       164 ~~~~~~~~~-------------------------~~~~~L~~L~l~~~~------------------------------~  188 (384)
                      .+..+..+.                         ..+++|+.+++++|.                              +
T Consensus       153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l  232 (520)
T 2z7x_B          153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET  232 (520)
T ss_dssp             SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEE
T ss_pred             cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccccc
Confidence            433333221                         123444455444442                              2


Q ss_pred             cCcccccC---ccccCCceEeeecCccCCCcchhHH----HhccCCcEEEccCCcC------------------------
Q 043452          189 TGSLQLSN---SKLDFLHHLDISSNSFTGRLPQNMS----TILQKLVYLDMSKNKF------------------------  237 (384)
Q Consensus       189 ~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~------------------------  237 (384)
                      .......+   ...++|++|++++|.+.+.++..++    ..+++|+.++++++.+                        
T Consensus       233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n  312 (520)
T 2z7x_B          233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT  312 (520)
T ss_dssp             EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESS
T ss_pred             CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCC
Confidence            11000000   0134788899998888766666552    2255555555555544                        


Q ss_pred             --CCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccc--cccccccccCCcCeEeCCCCcCCcc
Q 043452          238 --EGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCG--QVSPKFMNLTQLGWLSLDNNNFSGR  313 (384)
Q Consensus       238 --~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~  313 (384)
                        ....  ....+++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+  ..+..+..+++|++|++++|.+++.
T Consensus       313 ~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~  389 (520)
T 2z7x_B          313 RMVHML--CPSKISPFLHLDFSNNLLTDTVF-ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD  389 (520)
T ss_dssp             CCCCCC--CCSSCCCCCEEECCSSCCCTTTT-TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred             cccccc--chhhCCcccEEEeECCccChhhh-hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence              2211  11567889999999998874333 445678899999999998886  4456688889999999999998855


Q ss_pred             cchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452          314 ISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       314 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      ++...+..+++|++|++++|.+++..+..+.  ++|+.|++++|+++ .+|..+..+++|+.|++++|+|+
T Consensus       390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~  457 (520)
T 2z7x_B          390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK  457 (520)
T ss_dssp             GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence            6766677778999999999988866666543  78999999999998 67777779999999999999875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5.5e-35  Score=259.19  Aligned_cols=307  Identities=22%  Similarity=0.314  Sum_probs=243.1

Q ss_pred             hhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCch
Q 043452           26 ICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNL  105 (384)
Q Consensus        26 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  105 (384)
                      +..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++..+  +.++++|++|++++|.+++.            
T Consensus        40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~------------  103 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI------------  103 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC------------
T ss_pred             chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc------------
Confidence            5677888999998888873 44 37788889999998888874433  78888999999988876643            


Q ss_pred             hhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCC
Q 043452          106 EFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTN  185 (384)
Q Consensus       106 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  185 (384)
                                      ..+..+++|++|+++++.+..++. +..+++|+.|++++|.....++.  +..+++|++|++++
T Consensus       104 ----------------~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~  164 (347)
T 4fmz_A          104 ----------------SALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTE  164 (347)
T ss_dssp             ----------------GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCS
T ss_pred             ----------------hHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecC
Confidence                            124556778888888887777555 77888888888888855445544  56888888888888


Q ss_pred             CCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeecccccccc
Q 043452          186 NSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGEL  265 (384)
Q Consensus       186 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  265 (384)
                      +.+.....  +..+++|++|++++|.+. ..+.  ...+++|+.+++++|.+.+..+  +..+++|++|++++|.+.+..
T Consensus       165 ~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~  237 (347)
T 4fmz_A          165 SKVKDVTP--IANLTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS  237 (347)
T ss_dssp             SCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred             CCcCCchh--hccCCCCCEEEccCCccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc
Confidence            87775444  677888999999888887 3333  3457899999999998875544  778899999999999887433


Q ss_pred             ccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhc
Q 043452          266 SAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGN  345 (384)
Q Consensus       266 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  345 (384)
                      .   +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++ +  ..+..+++|+.|++++|.+.+..+..+.+
T Consensus       238 ~---~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  309 (347)
T 4fmz_A          238 P---LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I--SVLNNLSQLNSLFLNNNQLGNEDMEVIGG  309 (347)
T ss_dssp             G---GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred             c---hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C--hhhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence            2   67789999999999988764  457788999999999999884 3  23677899999999999999888899999


Q ss_pred             cCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452          346 FSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       346 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      +++|+.|++++|++++..|  +..+++|++|++++|+|+
T Consensus       310 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          310 LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            9999999999999987666  889999999999999985

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.6e-36  Score=284.54  Aligned_cols=365  Identities=24%  Similarity=0.272  Sum_probs=243.3

Q ss_pred             ccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEE
Q 043452            5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~   84 (384)
                      ++|++|++++|.++ .+++..|..+++|++|++++|.+.+..+.+|..+++|++|++++|.++ .+|..  .+++|++|+
T Consensus        52 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           52 PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD  127 (562)
T ss_dssp             TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred             CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence            45667777777665 454566667777777777777766555666667777777777777666 34443  667777777


Q ss_pred             CCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCc--cEEEccCCCC--CC-ccccc------------
Q 043452           85 LSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQL--KVLHLRNCNL--NG-TLGFL------------  147 (384)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~-~~~~~------------  147 (384)
                      +++|.+++......+.++++|++|+++.+....    ..+..+++|  ++|+++++.+  .+ .+..+            
T Consensus       128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l  203 (562)
T 3a79_B          128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ----LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF  203 (562)
T ss_dssp             CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT----TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred             CCCCCccccCchHhhcccCcccEEecCCCcccc----CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence            777766654333456666677777666544322    233444444  6666666655  22 11111            


Q ss_pred             --------------cccCCCCeEeccCCc----------------------------cCCCcHHHH--hhhCCCccEEEc
Q 043452          148 --------------QKQHDLKSLDLSHNK----------------------------LVGSFPAWL--LQHNTKLEVLRL  183 (384)
Q Consensus       148 --------------~~~~~L~~L~l~~~~----------------------------~~~~~~~~~--~~~~~~L~~L~l  183 (384)
                                    ..+++|+.++++++.                            +.+.....+  ....++|++|++
T Consensus       204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l  283 (562)
T 3a79_B          204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI  283 (562)
T ss_dssp             CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred             cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence                          123344444444432                            111000000  012347888888


Q ss_pred             CCCCCcCcccccC-----ccc--------------------------cCCceEeeecCccCCCcchhHHHhccCCcEEEc
Q 043452          184 TNNSFTGSLQLSN-----SKL--------------------------DFLHHLDISSNSFTGRLPQNMSTILQKLVYLDM  232 (384)
Q Consensus       184 ~~~~~~~~~~~~~-----~~~--------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  232 (384)
                      ++|.+.+..+..+     ..+                          .+|++|+++++.+.....   ...+++|++|++
T Consensus       284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~l  360 (562)
T 3a79_B          284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC---PPSPSSFTFLNF  360 (562)
T ss_dssp             EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEEC
T ss_pred             eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC---ccCCCCceEEEC
Confidence            8887764444333     222                          336666666665542111   134789999999


Q ss_pred             cCCcCCCccchhccCCCCCcEEEeeccccccccc-cchhccCCcceEEEccCCcccc-cccccccccCCcCeEeCCCCcC
Q 043452          233 SKNKFEGSISSSISEMKDLRFLDLSRNQFSGELS-APLLTGCFSLWLLDLSHNSFCG-QVSPKFMNLTQLGWLSLDNNNF  310 (384)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~  310 (384)
                      ++|.+++..+..+..+++|+.|++++|.+.+... ...+.++++|++|++++|.+.+ ..+..+..+++|++|++++|.+
T Consensus       361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l  440 (562)
T 3a79_B          361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML  440 (562)
T ss_dssp             CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred             CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence            9999998788888999999999999999874221 2456789999999999999987 4444577889999999999998


Q ss_pred             CcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452          311 SGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      ++..+..+.   ++|+.|++++|.++ .+|..+.++++|+.|++++|++++..+..+..+++|+.+++++|+|+
T Consensus       441 ~~~~~~~l~---~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          441 TGSVFRCLP---PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             CGGGGSSCC---TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             Ccchhhhhc---CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence            754443221   69999999999998 67776669999999999999999544444899999999999999985

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=7.1e-35  Score=268.37  Aligned_cols=326  Identities=23%  Similarity=0.316  Sum_probs=274.2

Q ss_pred             CCCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCc
Q 043452            1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSL   80 (384)
Q Consensus         1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L   80 (384)
                      +..+++|++|++++|.++ .+++  +.++++|++|++++|.+.+. +. ++++++|++|++++|.++...+  +.++++|
T Consensus        64 ~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  136 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFNNQITDIDP--LKNLTNL  136 (466)
T ss_dssp             GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred             hhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccC-hh-hcCCCCCCEEECCCCCCCCChH--HcCCCCC
Confidence            356899999999999997 5544  89999999999999999854 44 8999999999999999885433  8999999


Q ss_pred             cEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccC
Q 043452           81 QYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSH  160 (384)
Q Consensus        81 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  160 (384)
                      ++|++++|.+.+.   ..+..+++|+++.+.....    ....+..+++|++|+++++.+..++ .+..+++|+.|++++
T Consensus       137 ~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~  208 (466)
T 1o6v_A          137 NRLELSSNTISDI---SALSGLTSLQQLSFGNQVT----DLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATN  208 (466)
T ss_dssp             SEEEEEEEEECCC---GGGTTCTTCSEEEEEESCC----CCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCS
T ss_pred             CEEECCCCccCCC---hhhccCCcccEeecCCccc----CchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecC
Confidence            9999999998875   3588899999999863221    1223778899999999999988764 478899999999999


Q ss_pred             CccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCc
Q 043452          161 NKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGS  240 (384)
Q Consensus       161 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  240 (384)
                      |.+.+..+   ++.+++|++|++++|.+...  ..+..+++|++|++++|.+.+..+   ...+++|++|++++|.+++.
T Consensus       209 n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~  280 (466)
T 1o6v_A          209 NQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNI  280 (466)
T ss_dssp             SCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCC
T ss_pred             Cccccccc---ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcc
Confidence            99875544   56889999999999988864  356789999999999999884333   44589999999999999865


Q ss_pred             cchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhh
Q 043452          241 ISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLS  320 (384)
Q Consensus       241 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~  320 (384)
                      .+  +..+++|+.|++++|.+.+..+   +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++. +  .+.
T Consensus       281 ~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~--~l~  350 (466)
T 1o6v_A          281 SP--LAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-S--SLA  350 (466)
T ss_dssp             GG--GTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G--GGT
T ss_pred             cc--ccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-h--hhc
Confidence            44  7789999999999999874332   6779999999999999987665  67899999999999999844 2  367


Q ss_pred             ccccceEEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452          321 SARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG  361 (384)
Q Consensus       321 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  361 (384)
                      .+++|+.|++++|.+.+..|  +..+++|+.|++++|++++
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            78999999999999987766  7899999999999999986

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-35  Score=274.68  Aligned_cols=300  Identities=21%  Similarity=0.257  Sum_probs=185.6

Q ss_pred             ccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhh
Q 043452           30 KNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFM  109 (384)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~  109 (384)
                      ++++.|+++++.+.+..+..|.++++|++|+++++.+....|..+.++++|++|++++|.++                  
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------------   93 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK------------------   93 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC------------------
Confidence            34555555555555444455555555555555555555444555555555555555555443                  


Q ss_pred             hhcccCceeeccCCCCCCCCccEEEccCCCCCCccc-cccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCC
Q 043452          110 LSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLG-FLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSF  188 (384)
Q Consensus       110 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  188 (384)
                                                      .++. .+..+++|+.|++++|.+. .++...+..+++|++|++++|.+
T Consensus        94 --------------------------------~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l  140 (477)
T 2id5_A           94 --------------------------------LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDL  140 (477)
T ss_dssp             --------------------------------SCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTTC
T ss_pred             --------------------------------ccCcccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCcc
Confidence                                            3222 2344555555555555544 22223334556666666666666


Q ss_pred             cCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccc
Q 043452          189 TGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAP  268 (384)
Q Consensus       189 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  268 (384)
                      ....+..+..+++|++|++++|.+. ..+...+..+++|+.|++++|.+....+..+..+++|+.|++++|...+..+..
T Consensus       141 ~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  219 (477)
T 2id5_A          141 VYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN  219 (477)
T ss_dssp             CEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred             ceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc
Confidence            5555556666677777777777666 455444455677777777777776555556666777777777776655444444


Q ss_pred             hhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCC
Q 043452          269 LLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSS  348 (384)
Q Consensus       269 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  348 (384)
                      .+. ..+|++|++++|.+....+..+..+++|+.|++++|.++ .+....+..+++|+.|++++|.+.+..+.++.++++
T Consensus       220 ~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  297 (477)
T 2id5_A          220 CLY-GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY  297 (477)
T ss_dssp             TTT-TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred             ccc-CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence            333 346777777777776555556667777777777777776 444444566677777777777777666777777777


Q ss_pred             ccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452          349 LALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL  383 (384)
Q Consensus       349 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  383 (384)
                      |+.|++++|++++..+..|..+++|+.|++++|++
T Consensus       298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            77777777777766666667777777777777765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.8e-35  Score=276.27  Aligned_cols=348  Identities=22%  Similarity=0.276  Sum_probs=261.5

Q ss_pred             CCCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCc-cCccccCCCC
Q 043452            1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGS-LPSVIASLTS   79 (384)
Q Consensus         1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~   79 (384)
                      |.++++|++|++++|.++ .+++..|..+++|++|++++|.+.+..+..++.+++|++|++++|.++.. .+..+.++++
T Consensus        46 ~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  124 (549)
T 2z81_A           46 LRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN  124 (549)
T ss_dssp             TSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             hhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence            568899999999999998 66678899999999999999999977677799999999999999998853 5678899999


Q ss_pred             ccEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCC------------------------CCCccEEEc
Q 043452           80 LQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLP------------------------TSQLKVLHL  135 (384)
Q Consensus        80 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~------------------------~~~L~~L~l  135 (384)
                      |++|++++|.+.+..+...+.++++|++|+++.+..... ....+..                        +++|++|++
T Consensus       125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  203 (549)
T 2z81_A          125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY-QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL  203 (549)
T ss_dssp             CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE
T ss_pred             ccEEECCCCccccccCHhhhhcccccCeeeccCCccccc-ChhhhhccccCceEecccCcccccchhhHhhcccccEEEc
Confidence            999999999855555556788899999999987654432 2222332                        456666666


Q ss_pred             cCCCCCCcc----ccc----------------------------c-----------------------------------
Q 043452          136 RNCNLNGTL----GFL----------------------------Q-----------------------------------  148 (384)
Q Consensus       136 ~~~~~~~~~----~~~----------------------------~-----------------------------------  148 (384)
                      +++.+.+..    ...                            .                                   
T Consensus       204 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L  283 (549)
T 2z81_A          204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV  283 (549)
T ss_dssp             ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred             cCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence            666554421    000                            0                                   


Q ss_pred             ------------------------ccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcc---cccCccccC
Q 043452          149 ------------------------KQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSL---QLSNSKLDF  201 (384)
Q Consensus       149 ------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~  201 (384)
                                              ..++|+.|++++|.+. .+|..+++.+++|++|++++|.+.+..   ...+..+++
T Consensus       284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~  362 (549)
T 2z81_A          284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS  362 (549)
T ss_dssp             CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred             ccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcccc
Confidence                                    1123444555555443 566666667888888888888877544   234667788


Q ss_pred             CceEeeecCccCCCcch--hHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEE
Q 043452          202 LHHLDISSNSFTGRLPQ--NMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLL  279 (384)
Q Consensus       202 L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  279 (384)
                      |++|++++|.+. ..+.  .....+++|++|++++|.++ ..+..+..+++|++|++++|.+. ..+...   .++|++|
T Consensus       363 L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~---~~~L~~L  436 (549)
T 2z81_A          363 LQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI---PQTLEVL  436 (549)
T ss_dssp             CCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS---CTTCSEE
T ss_pred             CcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh---cCCceEE
Confidence            888888888886 3432  33455788888888888887 45566777788888888888876 322222   3688899


Q ss_pred             EccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccc
Q 043452          280 DLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLL  359 (384)
Q Consensus       280 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  359 (384)
                      ++++|.+++..    ..++.|++|++++|.++ .++.  ...+++|+.|++++|.+++..++++..+++|+.|++++|++
T Consensus       437 ~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          437 DVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             ECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred             ECCCCChhhhc----ccCChhcEEECCCCccC-cCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence            99998887643    46889999999999998 5554  34578999999999999988888899999999999999998


Q ss_pred             ccccc
Q 043452          360 EGNIP  364 (384)
Q Consensus       360 ~~~~~  364 (384)
                      .+..+
T Consensus       510 ~~~~~  514 (549)
T 2z81_A          510 DCSCP  514 (549)
T ss_dssp             CCCHH
T ss_pred             cCCCc
Confidence            86544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.8e-35  Score=272.01  Aligned_cols=347  Identities=20%  Similarity=0.221  Sum_probs=284.9

Q ss_pred             ccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhh
Q 043452           32 LIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLS  111 (384)
Q Consensus        32 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~  111 (384)
                      -+.++.+++.++ .+|. +.  ++|++|+++++.+++..|..+.++++|++|++++|.+.+..+...+..+++|++|+++
T Consensus        12 ~~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           12 GYNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TTEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             ccccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            456777777777 5565 33  7999999999999988899999999999999999998766666789999999999999


Q ss_pred             cccCceeeccCCCCCCCCccEEEccCCCCCC-cccc--ccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCC
Q 043452          112 LVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGF--LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSF  188 (384)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  188 (384)
                      .+... ......+..+++|++|++++|.+.+ .+..  +..+++|++|++++|.+++..+..++..+++|++|++++|.+
T Consensus        88 ~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           88 YNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TCTTC-EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCccC-ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            87653 3456678889999999999999887 3333  888999999999999998666766678999999999999999


Q ss_pred             cCcccccCccc--cCCceEeeecCccCCCcchhHH-------HhccCCcEEEccCCcCCCccchhccC---CCCCcEEEe
Q 043452          189 TGSLQLSNSKL--DFLHHLDISSNSFTGRLPQNMS-------TILQKLVYLDMSKNKFEGSISSSISE---MKDLRFLDL  256 (384)
Q Consensus       189 ~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l  256 (384)
                      ....+..+..+  ++|+.++++++.+.+..+..+.       ..+++|++|++++|.+++..+..+..   .++|+.+++
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            87777777665  7899999999988743222111       12468999999999998766655543   389999999


Q ss_pred             eccccccccc---------cchhc--cCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccc
Q 043452          257 SRNQFSGELS---------APLLT--GCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSL  325 (384)
Q Consensus       257 ~~~~~~~~~~---------~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L  325 (384)
                      ++|...+...         ...+.  ..++|++|++++|.+.+..+..+..+++|++|++++|.++ ...+..+..+++|
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L  325 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHL  325 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTC
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc-ccChhHhcCcccC
Confidence            9886542211         11111  2368999999999999988889999999999999999998 4545557778999


Q ss_pred             eEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452          326 QVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       326 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      ++|++++|.+.+..+..+.++++|+.|++++|++++..|..|..+++|+.|++++|+|+
T Consensus       326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  384 (455)
T 3v47_A          326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK  384 (455)
T ss_dssp             CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence            99999999999888899999999999999999999888999999999999999999885

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.8e-34  Score=264.67  Aligned_cols=301  Identities=24%  Similarity=0.298  Sum_probs=248.3

Q ss_pred             ccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEE
Q 043452            5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD   84 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~   84 (384)
                      +++++|++++|.++ .+++..|.++++|++|++++|.+.+..+.+|.++++|++|+++++.++...+..+.++++|++|+
T Consensus        32 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            57899999999998 67678899999999999999999987889999999999999999999976667789999999999


Q ss_pred             CCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC-ccccccccCCCCeEeccCCcc
Q 043452           85 LSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKL  163 (384)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~  163 (384)
                      +++|.+....                          ...+..+++|++|+++++.+.. .+..+..+++|+.|++++|.+
T Consensus       111 Ls~n~i~~~~--------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  164 (477)
T 2id5_A          111 ISENKIVILL--------------------------DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL  164 (477)
T ss_dssp             CTTSCCCEEC--------------------------TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred             CCCCccccCC--------------------------hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence            9999876542                          2345667788888888888776 445677888899999988888


Q ss_pred             CCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccch
Q 043452          164 VGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISS  243 (384)
Q Consensus       164 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  243 (384)
                      + .++...+..+++|+.|+++++.+.......+..+++|++|+++++...+..+...+. ..+|++|++++|.++.....
T Consensus       165 ~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~  242 (477)
T 2id5_A          165 T-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTAVPYL  242 (477)
T ss_dssp             S-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCCSCCHH
T ss_pred             c-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-CccccEEECcCCcccccCHH
Confidence            7 566666678889999999988888777777888889999999888776666655554 44888999998888866666


Q ss_pred             hccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccc
Q 043452          244 SISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSAR  323 (384)
Q Consensus       244 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~  323 (384)
                      .+..+++|+.|++++|.+. ......+.++++|++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..++
T Consensus       243 ~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~  320 (477)
T 2id5_A          243 AVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVG  320 (477)
T ss_dssp             HHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS-CCCGGGBSCGG
T ss_pred             HhcCccccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc-eeCHhHcCCCc
Confidence            7788888999999988887 455556677888999999988888877888888888999999888887 56666677778


Q ss_pred             cceEEEcCCCccc
Q 043452          324 SLQVLDISNNKLV  336 (384)
Q Consensus       324 ~L~~L~l~~~~~~  336 (384)
                      +|+.|++++|.+.
T Consensus       321 ~L~~L~l~~N~l~  333 (477)
T 2id5_A          321 NLETLILDSNPLA  333 (477)
T ss_dssp             GCCEEECCSSCEE
T ss_pred             ccCEEEccCCCcc
Confidence            8899999888775

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.9e-33  Score=248.14  Aligned_cols=305  Identities=23%  Similarity=0.325  Sum_probs=245.6

Q ss_pred             CCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccE
Q 043452            3 KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY   82 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   82 (384)
                      ++++|++|+++++.+. +++  .+..+++|++|++++|.+.+ .+. +..+++|++|++++|.++. . ..+.++++|++
T Consensus        42 ~l~~L~~L~l~~~~i~-~~~--~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~  114 (347)
T 4fmz_A           42 ELESITKLVVAGEKVA-SIQ--GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRE  114 (347)
T ss_dssp             HHTTCSEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSE
T ss_pred             hcccccEEEEeCCccc-cch--hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCE
Confidence            5789999999999987 563  38899999999999999984 444 8999999999999999884 3 46899999999


Q ss_pred             EECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCc
Q 043452           83 LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNK  162 (384)
Q Consensus        83 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  162 (384)
                      |++++|.+.+...                            +..+++|++|+++++........+..+++|+.|++++|.
T Consensus       115 L~l~~n~i~~~~~----------------------------~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~  166 (347)
T 4fmz_A          115 LYLNEDNISDISP----------------------------LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK  166 (347)
T ss_dssp             EECTTSCCCCCGG----------------------------GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC
T ss_pred             EECcCCcccCchh----------------------------hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC
Confidence            9999998765421                            445667888888888655545557888889999999888


Q ss_pred             cCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccc
Q 043452          163 LVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSIS  242 (384)
Q Consensus       163 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  242 (384)
                      +.+..+   +..+++|++|++++|.+.....  +..+++|+.++++++.+.+..+   ...+++|++|++++|.+++..+
T Consensus       167 ~~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~  238 (347)
T 4fmz_A          167 VKDVTP---IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP  238 (347)
T ss_dssp             CCCCGG---GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG
T ss_pred             cCCchh---hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc
Confidence            763333   6688899999999888875444  6788899999999998874333   3458899999999999886544


Q ss_pred             hhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhcc
Q 043452          243 SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSA  322 (384)
Q Consensus       243 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~  322 (384)
                        +..+++|++|++++|.+.+ .  ..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.++ ......+..+
T Consensus       239 --~~~l~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l  310 (347)
T 4fmz_A          239 --LANLSQLTWLEIGTNQISD-I--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLG-NEDMEVIGGL  310 (347)
T ss_dssp             --GTTCTTCCEEECCSSCCCC-C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-GGGHHHHHTC
T ss_pred             --hhcCCCCCEEECCCCccCC-C--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCC-CcChhHhhcc
Confidence              7788999999999998873 2  3467789999999999988865  45778899999999999998 4455567778


Q ss_pred             ccceEEEcCCCccccccchhhhccCCccEEEccCcccc
Q 043452          323 RSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE  360 (384)
Q Consensus       323 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  360 (384)
                      ++|++|++++|.+++..|  +..+++|+.|++++|+++
T Consensus       311 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          311 TNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            999999999999986655  789999999999999885

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.4e-34  Score=257.30  Aligned_cols=308  Identities=22%  Similarity=0.240  Sum_probs=167.9

Q ss_pred             ccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhh
Q 043452           28 ELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEF  107 (384)
Q Consensus        28 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  107 (384)
                      .++++++++++++.+....+..+..+++|++|+++++.+....+..+.++++|++|++++|.+++..             
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------  109 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP-------------  109 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-------------
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC-------------
Confidence            3456666666666665433334556666666666666665555556666666666666666554331             


Q ss_pred             hhhhcccCceeeccCCCCCCCCccEEEccCCCCCCcccc-ccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCC
Q 043452          108 FMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGF-LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNN  186 (384)
Q Consensus       108 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  186 (384)
                                   ...+..+++|++|+++++.+..++.. +..+++|++|++++|.+. .++...+..+++|++|++++|
T Consensus       110 -------------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          110 -------------PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSN  175 (390)
T ss_dssp             -------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSS
T ss_pred             -------------HHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCC
Confidence                         12233344455555555544443332 344555555555555544 232223344555555555555


Q ss_pred             CCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccc
Q 043452          187 SFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELS  266 (384)
Q Consensus       187 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  266 (384)
                      .++..   .+..+++|++++++++.+. ...     ..+.|++|++++|.+.....   ...++|+.|++++|.+.+.  
T Consensus       176 ~l~~~---~~~~l~~L~~L~l~~n~l~-~~~-----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--  241 (390)
T 3o6n_A          176 RLTHV---DLSLIPSLFHANVSYNLLS-TLA-----IPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--  241 (390)
T ss_dssp             CCSBC---CGGGCTTCSEEECCSSCCS-EEE-----CCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--
T ss_pred             cCCcc---ccccccccceeeccccccc-ccC-----CCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--
Confidence            54432   2334455555555555544 211     13456666666665553311   1235666666666666522  


Q ss_pred             cchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhcc
Q 043452          267 APLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNF  346 (384)
Q Consensus       267 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  346 (384)
                       ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ++.. +..+++|++|++++|.+. .+|..+..+
T Consensus       242 -~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~~l~~L~~L~L~~n~l~-~~~~~~~~l  317 (390)
T 3o6n_A          242 -AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQF  317 (390)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECS-SSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred             -HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcc-cCCCCCCCEEECCCCcce-ecCcccccc
Confidence             334556666666666666666556666666666666666666652 2221 234566666666666666 445555666


Q ss_pred             CCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452          347 SSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL  383 (384)
Q Consensus       347 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  383 (384)
                      ++|+.|++++|++++.   .+..+++|+.|++++|+|
T Consensus       318 ~~L~~L~L~~N~i~~~---~~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          318 DRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             TTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCE
T ss_pred             CcCCEEECCCCcccee---CchhhccCCEEEcCCCCc
Confidence            6666666666666543   155566666666666665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.9e-34  Score=271.85  Aligned_cols=365  Identities=20%  Similarity=0.195  Sum_probs=271.1

Q ss_pred             CccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEE
Q 043452            4 FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYL   83 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L   83 (384)
                      |...++++++++.++ .+|...   .++|++|++++|.+.+..+..+.++++|++|++++|.+++..|.++.++++|++|
T Consensus        30 ~~~~~~l~ls~~~L~-~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           30 NELESMVDYSNRNLT-HVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             ---CCEEECTTSCCC-SCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             cCCCcEEEcCCCCCc-cCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            455688999999997 675433   2899999999999997777899999999999999999998888999999999999


Q ss_pred             ECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCC--CeEeccCC
Q 043452           84 DLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDL--KSLDLSHN  161 (384)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~  161 (384)
                      ++++|.++.... .   .+++|++|+++.+.......+..+..+++|++|+++++.+..  ..+..+++|  +.|++++|
T Consensus       106 ~Ls~N~l~~lp~-~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          106 DVSHNRLQNISC-C---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             ECTTSCCCEECS-C---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEES
T ss_pred             ECCCCcCCccCc-c---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecc
Confidence            999999885422 2   789999999988776543444567888999999999988765  234444555  88888888


Q ss_pred             cc--CCCcHHHH-------------------------hhhCCCccEEEcCCCC---------------------------
Q 043452          162 KL--VGSFPAWL-------------------------LQHNTKLEVLRLTNNS---------------------------  187 (384)
Q Consensus       162 ~~--~~~~~~~~-------------------------~~~~~~L~~L~l~~~~---------------------------  187 (384)
                      .+  ++..+..+                         +..+++|+.++++++.                           
T Consensus       180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~  259 (562)
T 3a79_B          180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI  259 (562)
T ss_dssp             SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred             cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence            76  33322221                         1123455555555542                           


Q ss_pred             -CcCccc---ccCccccCCceEeeecCccCCCcchhH----------------------------HHh--ccCCcEEEcc
Q 043452          188 -FTGSLQ---LSNSKLDFLHHLDISSNSFTGRLPQNM----------------------------STI--LQKLVYLDMS  233 (384)
Q Consensus       188 -~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------------------~~~--~~~L~~L~l~  233 (384)
                       +.....   ......++|++|++++|.+.+.++..+                            ...  .++|++|+++
T Consensus       260 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~  339 (562)
T 3a79_B          260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS  339 (562)
T ss_dssp             EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred             cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence             110000   000112378899998888775554432                            111  1458888888


Q ss_pred             CCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccc--ccccccccCCcCeEeCCCCcCC
Q 043452          234 KNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ--VSPKFMNLTQLGWLSLDNNNFS  311 (384)
Q Consensus       234 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~  311 (384)
                      +|.+....  ....+++|++|++++|.+.+. ....+.++++|++|++++|.+.+.  .+..+..+++|++|++++|.++
T Consensus       340 ~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~  416 (562)
T 3a79_B          340 DTPFIHMV--CPPSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN  416 (562)
T ss_dssp             SSCCCCCC--CCSSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred             CCCccccc--CccCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence            88775332  125789999999999999843 334567799999999999999863  3566888999999999999998


Q ss_pred             cccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452          312 GRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       312 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      +.++...+..+++|+.|++++|.+++..+..+.  ++|+.|++++|+++ .+|..+..+++|+.|++++|.++
T Consensus       417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~  486 (562)
T 3a79_B          417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK  486 (562)
T ss_dssp             SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred             CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence            657777777889999999999999866665443  78999999999998 56666669999999999999985

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.2e-34  Score=273.92  Aligned_cols=375  Identities=23%  Similarity=0.242  Sum_probs=249.8

Q ss_pred             cccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEEC
Q 043452            6 NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDL   85 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l   85 (384)
                      ++++|+|++|.++ .+++..|.++++|++|++++|++.+..+.+|..+++|++|++++|.++...+..|.++++|++|++
T Consensus        53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            6899999999997 787788999999999999999998777778999999999999999988666678899999999999


Q ss_pred             CCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCc-cccccccCCC----CeEeccC
Q 043452           86 SDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGT-LGFLQKQHDL----KSLDLSH  160 (384)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L----~~L~l~~  160 (384)
                      ++|.+++.. ...+.++++|++|+++.+..........+..+++|++|+++++.+.++ +..+..+.++    ..++++.
T Consensus       132 s~N~l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~  210 (635)
T 4g8a_A          132 VETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  210 (635)
T ss_dssp             TTSCCCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             CCCcCCCCC-hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence            999887653 356888999999999887665544555667788999999998887662 2223222221    1222222


Q ss_pred             Ccc-----------------------CCCcHHHHhhhCCCc---------------------------------------
Q 043452          161 NKL-----------------------VGSFPAWLLQHNTKL---------------------------------------  178 (384)
Q Consensus       161 ~~~-----------------------~~~~~~~~~~~~~~L---------------------------------------  178 (384)
                      +.+                       ........+..++.+                                       
T Consensus       211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~  290 (635)
T 4g8a_A          211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  290 (635)
T ss_dssp             CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred             CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence            221                       111122222222222                                       


Q ss_pred             ----------------------------------------cEEEcCCCCCcCccc-------------------ccCccc
Q 043452          179 ----------------------------------------EVLRLTNNSFTGSLQ-------------------LSNSKL  199 (384)
Q Consensus       179 ----------------------------------------~~L~l~~~~~~~~~~-------------------~~~~~~  199 (384)
                                                              +.|++.++.+.....                   .....+
T Consensus       291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l  370 (635)
T 4g8a_A          291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL  370 (635)
T ss_dssp             CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred             hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence                                                    222222221111000                   001123


Q ss_pred             cCCceEeeecCccCCCcc-hhHHHhccCCcEEEccCCcCC-----------------------Cc-cchhccCCCCCcEE
Q 043452          200 DFLHHLDISSNSFTGRLP-QNMSTILQKLVYLDMSKNKFE-----------------------GS-ISSSISEMKDLRFL  254 (384)
Q Consensus       200 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~-----------------------~~-~~~~~~~~~~L~~L  254 (384)
                      ++|+.++++.+.+..... ........+++.+++..+...                       .. ....+..+++++.+
T Consensus       371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l  450 (635)
T 4g8a_A          371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  450 (635)
T ss_dssp             TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred             cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence            344444444444321110 111111333444433333221                       10 11223344555566


Q ss_pred             EeeccccccccccchhccCCcceEEEccCCccc-ccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCC
Q 043452          255 DLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFC-GQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNN  333 (384)
Q Consensus       255 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  333 (384)
                      +++.|.+. ......+..++.++.|++++|... ...+..+..+++|++|++++|.++ .+++..+..+++|++|++++|
T Consensus       451 ~ls~n~l~-~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~-~l~~~~f~~l~~L~~L~Ls~N  528 (635)
T 4g8a_A          451 DISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHN  528 (635)
T ss_dssp             ECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTS
T ss_pred             cccccccc-cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccC-CcChHHHcCCCCCCEEECCCC
Confidence            66666554 233344566788888888888644 356677888899999999999998 555566788899999999999


Q ss_pred             ccccccchhhhccCCccEEEccCcccccccccccccC-CCCceEeCcCCCCC
Q 043452          334 KLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNL-EALEILDVSENNLS  384 (384)
Q Consensus       334 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~s  384 (384)
                      .+++..+.+|.++++|+.|++++|++++..|..+..+ ++|+.|++++|+|+
T Consensus       529 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          529 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            9998888899999999999999999998889899888 58999999999985

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=8.6e-34  Score=271.79  Aligned_cols=358  Identities=24%  Similarity=0.274  Sum_probs=255.5

Q ss_pred             CCCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCc
Q 043452            1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSL   80 (384)
Q Consensus         1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L   80 (384)
                      |+++++|++|+|++|.++ .+++.+|.++++|++|++++|++.+..+.+|..+++|++|++++|.++...+..+.++++|
T Consensus        72 f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L  150 (635)
T 4g8a_A           72 FFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  150 (635)
T ss_dssp             TTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred             HhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence            678899999999999997 7878889999999999999999986666788999999999999999987777778999999


Q ss_pred             cEEECCCCccccccccccCCCCCchhhhhhhcccCceeec--------------------------cCCCCCCCCccEEE
Q 043452           81 QYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE--------------------------TENWLPTSQLKVLH  134 (384)
Q Consensus        81 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~--------------------------~~~~~~~~~L~~L~  134 (384)
                      ++|++++|.+++......+..+++|++|+++.+.......                          .........++.+.
T Consensus       151 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~  230 (635)
T 4g8a_A          151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT  230 (635)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred             CeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhh
Confidence            9999999988765444566777777777765543211100                          00000000011111


Q ss_pred             cc------------------------------------------------------------------------------
Q 043452          135 LR------------------------------------------------------------------------------  136 (384)
Q Consensus       135 l~------------------------------------------------------------------------------  136 (384)
                      +.                                                                              
T Consensus       231 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  310 (635)
T 4g8a_A          231 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSS  310 (635)
T ss_dssp             EESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSE
T ss_pred             hhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccc
Confidence            11                                                                              


Q ss_pred             ----CCCCCCccccccccCCCCeEeccCCccCCCcHH------------------HHhhhCCCccEEEcCCCCCcC----
Q 043452          137 ----NCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPA------------------WLLQHNTKLEVLRLTNNSFTG----  190 (384)
Q Consensus       137 ----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------------~~~~~~~~L~~L~l~~~~~~~----  190 (384)
                          .+.+..+ ..+.....++.|++.++.+......                  .....+++|+.++++.+.+..    
T Consensus       311 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~  389 (635)
T 4g8a_A          311 FSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC  389 (635)
T ss_dssp             EEEESCEEEEC-GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEEC
T ss_pred             ccccccccccc-cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccccc
Confidence                0000000 0111223344444444332210000                  001133455555555543321    


Q ss_pred             ---------------------cccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCC
Q 043452          191 ---------------------SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMK  249 (384)
Q Consensus       191 ---------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  249 (384)
                                           .....+..+++|+.+++..+......+...+..+++++.++++.|.+....+..+..++
T Consensus       390 ~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~  469 (635)
T 4g8a_A          390 SQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS  469 (635)
T ss_dssp             CHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred             ccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccch
Confidence                                 12234556778888888877766455555556688999999999998877778888899


Q ss_pred             CCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEE
Q 043452          250 DLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLD  329 (384)
Q Consensus       250 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~  329 (384)
                      .++.+++++|..........+..+++|++|++++|.+.+..+..|..+++|++|++++|.++ .+++..+..+++|+.|+
T Consensus       470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~  548 (635)
T 4g8a_A          470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLD  548 (635)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-BCCCGGGTTCTTCCEEE
T ss_pred             hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC-CCChhHHhCCCCCCEEE
Confidence            99999999998664555567788999999999999999988999999999999999999998 55666678889999999


Q ss_pred             cCCCccccccchhhhcc-CCccEEEccCccccc
Q 043452          330 ISNNKLVGQIPSWIGNF-SSLALLTVSKNLLEG  361 (384)
Q Consensus       330 l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~  361 (384)
                      +++|.+++..|+++..+ ++|+.|++++|++..
T Consensus       549 Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             CTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            99999998889999887 689999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=6.3e-33  Score=262.81  Aligned_cols=308  Identities=22%  Similarity=0.248  Sum_probs=193.3

Q ss_pred             ccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhh
Q 043452           28 ELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEF  107 (384)
Q Consensus        28 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  107 (384)
                      .+++++.++++++.+....+..+..+++|++|+++++.+.+..+..+..+++|++|++++|.+++..             
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------  115 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP-------------  115 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-------------
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC-------------
Confidence            3466777777777766544455666777777777777777666667777777777777777665432             


Q ss_pred             hhhhcccCceeeccCCCCCCCCccEEEccCCCCCCcccc-ccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCC
Q 043452          108 FMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGF-LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNN  186 (384)
Q Consensus       108 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  186 (384)
                                   ...+..+++|++|++++|.+..++.. +..+++|+.|++++|.++ .++...+..+++|++|++++|
T Consensus       116 -------------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          116 -------------PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             -------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTS
T ss_pred             -------------HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCC
Confidence                         12334455666666666665554433 356666666666666655 333333445666666666666


Q ss_pred             CCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccc
Q 043452          187 SFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELS  266 (384)
Q Consensus       187 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  266 (384)
                      .+...   .+..+++|+.|++++|.+.+ .+     ..++|+.|++++|.+......   ..++|+.|++++|.+.+.  
T Consensus       182 ~l~~~---~~~~l~~L~~L~l~~n~l~~-l~-----~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--  247 (597)
T 3oja_B          182 RLTHV---DLSLIPSLFHANVSYNLLST-LA-----IPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--  247 (597)
T ss_dssp             CCSBC---CGGGCTTCSEEECCSSCCSE-EE-----CCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--
T ss_pred             CCCCc---ChhhhhhhhhhhcccCcccc-cc-----CCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--
Confidence            65543   23445666666666666552 21     134677777777766533221   125677777777776632  


Q ss_pred             cchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhcc
Q 043452          267 APLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNF  346 (384)
Q Consensus       267 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  346 (384)
                       ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++ ++. .+..+++|+.|++++|.+. .+|..+..+
T Consensus       248 -~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~-~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l  323 (597)
T 3oja_B          248 -AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNL-YGQPIPTLKVLDLSHNHLL-HVERNQPQF  323 (597)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EEC-SSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred             -hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCc-ccccCCCCcEEECCCCCCC-ccCcccccC
Confidence             345567777777777777777667777777777777777777763 222 2344577777777777776 556666777


Q ss_pred             CCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452          347 SSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL  383 (384)
Q Consensus       347 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  383 (384)
                      ++|+.|++++|++++.   .+..+++|+.|++++|+|
T Consensus       324 ~~L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          324 DRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             TTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSCE
T ss_pred             CCCCEEECCCCCCCCc---ChhhcCCCCEEEeeCCCC
Confidence            7777777777777643   255677777777777775

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=1.7e-35  Score=272.79  Aligned_cols=380  Identities=20%  Similarity=0.154  Sum_probs=277.7

Q ss_pred             CccccEEeCcCcccccccchhhhhccccccEEecCCCcccc----CCchhhhcCCCCCEEEeecCcccCccCccc-cCCC
Q 043452            4 FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEG----PLPQCLKNLTRLKVFGISSNQLSGSLPSVI-ASLT   78 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~   78 (384)
                      .++|++|+++++.++.......+..+++|++|++++|.+.+    .++..+..+++|++|+++++.+.+..+..+ ..++
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            36789999999998744434448889999999999999874    346677888999999999998875444333 3344


Q ss_pred             ----CccEEECCCCcccccc---ccccCCCCCchhhhhhhcccCceeec---cCC-CCCCCCccEEEccCCCCCC-----
Q 043452           79 ----SLQYLDLSDNYFQGIF---YLSSLGNHSNLEFFMLSLVNNTLEVE---TEN-WLPTSQLKVLHLRNCNLNG-----  142 (384)
Q Consensus        79 ----~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~---~~~-~~~~~~L~~L~l~~~~~~~-----  142 (384)
                          +|++|++++|.+++..   ....+..+++|++|+++.+.......   ... ....++|++|++++|.+..     
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                7999999999887532   23567888999999998766432211   111 2235689999999998876     


Q ss_pred             ccccccccCCCCeEeccCCccCCCcHHHHhh----hCCCccEEEcCCCCCcCc----ccccCccccCCceEeeecCccCC
Q 043452          143 TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQ----HNTKLEVLRLTNNSFTGS----LQLSNSKLDFLHHLDISSNSFTG  214 (384)
Q Consensus       143 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~  214 (384)
                      ++..+..+++|+.|++++|.+.+..+..+..    ..++|++|++++|.++..    .+..+..+++|++|++++|.+.+
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence            3456677899999999999876444433332    356999999999988764    34456678999999999998875


Q ss_pred             CcchhHHH----hccCCcEEEccCCcCCCc----cchhccCCCCCcEEEeeccccccccccchh----ccCCcceEEEcc
Q 043452          215 RLPQNMST----ILQKLVYLDMSKNKFEGS----ISSSISEMKDLRFLDLSRNQFSGELSAPLL----TGCFSLWLLDLS  282 (384)
Q Consensus       215 ~~~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~  282 (384)
                      .....+..    .+++|++|++++|.+++.    .+..+..+++|++|++++|.+.+.....+.    ...++|++|+++
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  321 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  321 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence            44444433    367899999999988753    455666789999999999988643332222    223689999999


Q ss_pred             CCccccc----ccccccccCCcCeEeCCCCcCCcccchhhhhc----cccceEEEcCCCcccc----ccchhhhccCCcc
Q 043452          283 HNSFCGQ----VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSS----ARSLQVLDISNNKLVG----QIPSWIGNFSSLA  350 (384)
Q Consensus       283 ~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~  350 (384)
                      +|.+++.    .+..+..+++|++|++++|.+++.....+...    .++|++|++++|.+++    .++.++..+++|+
T Consensus       322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~  401 (461)
T 1z7x_W          322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  401 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence            9988865    34555677999999999998875444433322    4689999999999886    6778888899999


Q ss_pred             EEEccCcccccccccccc-----cCCCCceEeCcCCCC
Q 043452          351 LLTVSKNLLEGNIPVQLK-----NLEALEILDVSENNL  383 (384)
Q Consensus       351 ~L~l~~~~~~~~~~~~~~-----~~~~L~~l~l~~~~~  383 (384)
                      +|++++|++++.....+.     ...+|+.|++.++.+
T Consensus       402 ~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~  439 (461)
T 1z7x_W          402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  439 (461)
T ss_dssp             EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             EEECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence            999999998865444432     234688888877765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.4e-32  Score=251.15  Aligned_cols=296  Identities=25%  Similarity=0.277  Sum_probs=194.7

Q ss_pred             CCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccE
Q 043452            3 KFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQY   82 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~   82 (384)
                      ++++|++|+++++.++ .++  .+..+++|++|++++|.+.+. +  ++.+++|++|++++|.+++. +  +.++++|++
T Consensus        40 ~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~  110 (457)
T 3bz5_A           40 QLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTY  110 (457)
T ss_dssp             HHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred             HcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence            4678888888888877 443  477888888888888888753 3  77788888888888887753 3  778888888


Q ss_pred             EECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCc
Q 043452           83 LDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNK  162 (384)
Q Consensus        83 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  162 (384)
                      |++++|.+++.    .+..+++|++|+++.+.....    .+..+++|++|+++++...+.. .+..+++|+.|++++|.
T Consensus       111 L~L~~N~l~~l----~~~~l~~L~~L~l~~N~l~~l----~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          111 LNCDTNKLTKL----DVSQNPLLTYLNCARNTLTEI----DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             EECCSSCCSCC----CCTTCTTCCEEECTTSCCSCC----CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCee----cCCCCCcCCEEECCCCcccee----ccccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCc
Confidence            88888887764    267777888887776654431    3566777888888777443311 35667778888888877


Q ss_pred             cCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccc
Q 043452          163 LVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSIS  242 (384)
Q Consensus       163 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  242 (384)
                      +++ ++   +..+++|+.|++++|.++..   .+..+++|++|++++|.+.+ ++   ...+++|++|++++|.+++...
T Consensus       182 l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          182 ITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             CCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCCC
T ss_pred             cce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcCH
Confidence            763 44   45677788888887777654   36677788888888887773 44   2346778888888887775432


Q ss_pred             hhccCCCCCcEEEeec----------cccccccccchhccCCcceEEEccCCcccccccc--------cccccCCcCeEe
Q 043452          243 SSISEMKDLRFLDLSR----------NQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSP--------KFMNLTQLGWLS  304 (384)
Q Consensus       243 ~~~~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~l~  304 (384)
                         ..+++|+.+++++          |...+..+   +..+++|+.|++++|...+..+.        .+..+++|++|+
T Consensus       251 ---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~  324 (457)
T 3bz5_A          251 ---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY  324 (457)
T ss_dssp             ---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred             ---HHCCCCCEEeccCCCCCEEECCCCccCCccc---ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEE
Confidence               3344444444433          33322222   23466777777777765443332        234455666666


Q ss_pred             CCCCcCCcccchhhhhccccceEEEcCCCcccc
Q 043452          305 LDNNNFSGRISNGFLSSARSLQVLDISNNKLVG  337 (384)
Q Consensus       305 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  337 (384)
                      +++|.+++ ++   +..+++|+.|++++|.+++
T Consensus       325 L~~N~l~~-l~---l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          325 LNNTELTE-LD---VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             CTTCCCSC-CC---CTTCTTCSEEECCSSCCCB
T ss_pred             CCCCcccc-cc---cccCCcCcEEECCCCCCCC
Confidence            66666664 21   4455666666666666653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=3.7e-34  Score=263.80  Aligned_cols=356  Identities=20%  Similarity=0.143  Sum_probs=269.8

Q ss_pred             cccccEEecCCCccccCCch-hhhcCCCCCEEEeecCcccC----ccCccccCCCCccEEECCCCccccccccccCCCCC
Q 043452           29 LKNLIELNLEGNAIEGPLPQ-CLKNLTRLKVFGISSNQLSG----SLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHS  103 (384)
Q Consensus        29 ~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  103 (384)
                      .++|++|+++++.+.+.... .+..+++|++|++++|.+..    .++..+..+++|++|++++|.+.+.........++
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            36799999999998754333 37889999999999999874    34667888999999999999987654333333344


Q ss_pred             ----chhhhhhhcccCcee---eccCCCCCCCCccEEEccCCCCCC-ccc----c-ccccCCCCeEeccCCccCCCcH--
Q 043452          104 ----NLEFFMLSLVNNTLE---VETENWLPTSQLKVLHLRNCNLNG-TLG----F-LQKQHDLKSLDLSHNKLVGSFP--  168 (384)
Q Consensus       104 ----~L~~l~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~-~~~----~-~~~~~~L~~L~l~~~~~~~~~~--  168 (384)
                          +|++|+++.+.....   .....+..+++|++|+++++.+.+ ...    . ....++|++|++++|.+++...  
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                799999998765432   335567788999999999998765 121    1 2235689999999998875443  


Q ss_pred             -HHHhhhCCCccEEEcCCCCCcCcccccCc-----cccCCceEeeecCccCCCcch---hHHHhccCCcEEEccCCcCCC
Q 043452          169 -AWLLQHNTKLEVLRLTNNSFTGSLQLSNS-----KLDFLHHLDISSNSFTGRLPQ---NMSTILQKLVYLDMSKNKFEG  239 (384)
Q Consensus       169 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~  239 (384)
                       ...+..+++|++|++++|.+.+.....+.     ..++|++|++++|.+++....   .....+++|++|++++|.+++
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence             33445789999999999988754443333     256999999999999854322   223348999999999998875


Q ss_pred             ccc-----hhccCCCCCcEEEeecccccccc---ccchhccCCcceEEEccCCccccccccccccc-----CCcCeEeCC
Q 043452          240 SIS-----SSISEMKDLRFLDLSRNQFSGEL---SAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNL-----TQLGWLSLD  306 (384)
Q Consensus       240 ~~~-----~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~l~l~  306 (384)
                      ...     .....+++|++|++++|.+++..   ....+..+++|++|++++|.+.+..+..+...     +.|++|+++
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  321 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  321 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence            322     22335899999999999987432   23345568999999999999877655544432     689999999


Q ss_pred             CCcCCcccc---hhhhhccccceEEEcCCCccccccchhhhc-----cCCccEEEccCccccc----ccccccccCCCCc
Q 043452          307 NNNFSGRIS---NGFLSSARSLQVLDISNNKLVGQIPSWIGN-----FSSLALLTVSKNLLEG----NIPVQLKNLEALE  374 (384)
Q Consensus       307 ~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~  374 (384)
                      +|.+++...   ...+..+++|++|++++|.+.+..+.++..     .++|+.|++++|++++    ..+..+..+++|+
T Consensus       322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~  401 (461)
T 1z7x_W          322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  401 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence            999885432   234556799999999999998776666653     6799999999999986    6778888999999


Q ss_pred             eEeCcCCCCC
Q 043452          375 ILDVSENNLS  384 (384)
Q Consensus       375 ~l~l~~~~~s  384 (384)
                      +|++++|+|+
T Consensus       402 ~L~l~~N~i~  411 (461)
T 1z7x_W          402 ELDLSNNCLG  411 (461)
T ss_dssp             EEECCSSSCC
T ss_pred             EEECCCCCCC
Confidence            9999999985

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.9e-31  Score=240.45  Aligned_cols=301  Identities=20%  Similarity=0.207  Sum_probs=231.5

Q ss_pred             hhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCC
Q 043452           24 QGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHS  103 (384)
Q Consensus        24 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  103 (384)
                      ..++++++|++|+++++.+.+ .| .++.+++|++|++++|.+++. +  +..+++|++|++++|.+++.    .+..++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~----~~~~l~  106 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL----DVTPLT  106 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC----CCTTCT
T ss_pred             cChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee----ecCCCC
Confidence            457889999999999999985 45 689999999999999999854 3  88999999999999998875    278899


Q ss_pred             chhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEc
Q 043452          104 NLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRL  183 (384)
Q Consensus       104 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  183 (384)
                      +|++|+++.+.....    .+..+++|++|+++++.+.+++  +..+++|+.|++++|...+.++   +..+++|++|++
T Consensus       107 ~L~~L~L~~N~l~~l----~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~l  177 (457)
T 3bz5_A          107 KLTYLNCDTNKLTKL----DVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDC  177 (457)
T ss_dssp             TCCEEECCSSCCSCC----CCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEEC
T ss_pred             cCCEEECCCCcCCee----cCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEEC
Confidence            999999987765432    2778899999999999988763  7788999999999986554553   567899999999


Q ss_pred             CCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeecccccc
Q 043452          184 TNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSG  263 (384)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  263 (384)
                      ++|.++...   +..+++|++|++++|.+.+ .+   ...+++|++|++++|++++. +  +..+++|+.|++++|.+.+
T Consensus       178 s~n~l~~l~---l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          178 SFNKITELD---VSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CSSCCCCCC---CTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC
T ss_pred             CCCccceec---cccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCC
Confidence            999888642   7788999999999999874 32   23478999999999999863 3  7788999999999999874


Q ss_pred             ccccchhccCCcceEEEc----------cCCcccccccccccccCCcCeEeCCCCcCCcccchh-------hhhccccce
Q 043452          264 ELSAPLLTGCFSLWLLDL----------SHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNG-------FLSSARSLQ  326 (384)
Q Consensus       264 ~~~~~~~~~~~~L~~L~l----------~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-------~~~~~~~L~  326 (384)
                      . +   ...+++|+.|++          ++|...+..+  +..+++|+.|++++|...+.++..       -+..+++|+
T Consensus       248 ~-~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~  321 (457)
T 3bz5_A          248 L-D---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLV  321 (457)
T ss_dssp             C-C---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred             c-C---HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCC
Confidence            3 2   233555555544          4444443333  356788888888888754333321       144557788


Q ss_pred             EEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452          327 VLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG  361 (384)
Q Consensus       327 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  361 (384)
                      .|++++|.+++. +  +..+++|+.|++++|++++
T Consensus       322 ~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          322 YLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             EEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred             EEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence            888888888753 2  7778888888888888875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=8.1e-31  Score=236.00  Aligned_cols=288  Identities=22%  Similarity=0.254  Sum_probs=242.4

Q ss_pred             cCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCcc
Q 043452           52 NLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLK  131 (384)
Q Consensus        52 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~  131 (384)
                      .+++++.++++++.+....+..+.++++|++|++++|.+++..                          ...+..+++|+
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~--------------------------~~~~~~l~~L~   96 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID--------------------------TYAFAYAHTIQ   96 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEEC--------------------------TTTTTTCTTCC
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccC--------------------------hhhccCCCCcC
Confidence            4689999999999988555566789999999999999876542                          23567788999


Q ss_pred             EEEccCCCCCCc-cccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecC
Q 043452          132 VLHLRNCNLNGT-LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSN  210 (384)
Q Consensus       132 ~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  210 (384)
                      +|+++++.+..+ +..+..+++|+.|++++|.+. .++..+++.+++|++|++++|.+....+..+..+++|++|++++|
T Consensus        97 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A           97 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN  175 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred             EEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence            999999999885 456889999999999999987 777777788999999999999999888888999999999999999


Q ss_pred             ccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccc
Q 043452          211 SFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQV  290 (384)
Q Consensus       211 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  290 (384)
                      .+.+ .+.   ..+++|++|++++|.++..     ...++|+.|++++|.+.. .+..   ..++|+.|++++|.+.+. 
T Consensus       176 ~l~~-~~~---~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~-~~~~---~~~~L~~L~l~~n~l~~~-  241 (390)
T 3o6n_A          176 RLTH-VDL---SLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINV-VRGP---VNVELTILKLQHNNLTDT-  241 (390)
T ss_dssp             CCSB-CCG---GGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCE-EECC---CCSSCCEEECCSSCCCCC-
T ss_pred             cCCc-ccc---ccccccceeeccccccccc-----CCCCcceEEECCCCeeee-cccc---ccccccEEECCCCCCccc-
Confidence            9884 332   3378999999999987632     345789999999999873 3322   257999999999999864 


Q ss_pred             cccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccC
Q 043452          291 SPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNL  370 (384)
Q Consensus       291 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  370 (384)
                       ..+..+++|++|++++|.+++ ..+..+..+++|+.|++++|.+. .++..+..+++|+.|++++|++. ..|..+..+
T Consensus       242 -~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l  317 (390)
T 3o6n_A          242 -AWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF  317 (390)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCE-EESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred             -HHHcCCCCccEEECCCCcCCC-cChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCcccccc
Confidence             467889999999999999984 44455777899999999999998 45666678999999999999998 566778899


Q ss_pred             CCCceEeCcCCCCC
Q 043452          371 EALEILDVSENNLS  384 (384)
Q Consensus       371 ~~L~~l~l~~~~~s  384 (384)
                      ++|+.|++++|+|+
T Consensus       318 ~~L~~L~L~~N~i~  331 (390)
T 3o6n_A          318 DRLENLYLDHNSIV  331 (390)
T ss_dssp             TTCSEEECCSSCCC
T ss_pred             CcCCEEECCCCccc
Confidence            99999999999985

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=7.7e-30  Score=224.35  Aligned_cols=290  Identities=18%  Similarity=0.226  Sum_probs=174.5

Q ss_pred             ccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhh
Q 043452           30 KNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFM  109 (384)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~  109 (384)
                      .+++.++++++.+. .+|..+.  +++++|+++++.+++..+..+.++++|++|++++|.+++..               
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------   92 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS---------------   92 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC---------------
T ss_pred             CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC---------------
Confidence            36778888877776 4555443  57788888888777666667778888888888877665432               


Q ss_pred             hhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCc
Q 043452          110 LSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFT  189 (384)
Q Consensus       110 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  189 (384)
                                 +..+..+++|++|+++++.+..++..+.  ++|+.|++++|.+. .++...+..+++|++|++++|.+.
T Consensus        93 -----------~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~  158 (330)
T 1xku_A           93 -----------PGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK  158 (330)
T ss_dssp             -----------TTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCC
T ss_pred             -----------HHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCC
Confidence                       2345556677777777777666554433  67888888888776 555555667788888888877665


Q ss_pred             C--cccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeecccccccccc
Q 043452          190 G--SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSA  267 (384)
Q Consensus       190 ~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  267 (384)
                      .  .....+..+++|++|++++|.+. .++..+   .++|++|++++|.+++..+..+..+++                 
T Consensus       159 ~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~-----------------  217 (330)
T 1xku_A          159 SSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNN-----------------  217 (330)
T ss_dssp             GGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTT-----------------
T ss_pred             ccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCC-----------------
Confidence            3  33444556666666666666655 333322   134555555555554433444444444                 


Q ss_pred             chhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhc--
Q 043452          268 PLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGN--  345 (384)
Q Consensus       268 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--  345 (384)
                              |++|++++|.+.+..+..+..+++|++|++++|.++ .++.. +..+++|++|++++|.+++..+.+|..  
T Consensus       218 --------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~-l~~l~~L~~L~l~~N~i~~~~~~~f~~~~  287 (330)
T 1xku_A          218 --------LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPG  287 (330)
T ss_dssp             --------CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT-TTTCSSCCEEECCSSCCCCCCTTSSSCSS
T ss_pred             --------CCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChh-hccCCCcCEEECCCCcCCccChhhcCCcc
Confidence                    444444444444444444455555555555555554 33322 334455666666666555444444432  


Q ss_pred             ----cCCccEEEccCccccc--ccccccccCCCCceEeCcCCC
Q 043452          346 ----FSSLALLTVSKNLLEG--NIPVQLKNLEALEILDVSENN  382 (384)
Q Consensus       346 ----~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~  382 (384)
                          ...|+.|++++|++..  +.|..|..++.++.+++++|+
T Consensus       288 ~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence                3567777787777653  456667777888888887774

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.97  E-value=1.3e-30  Score=238.06  Aligned_cols=178  Identities=29%  Similarity=0.344  Sum_probs=87.2

Q ss_pred             CccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEe
Q 043452          177 KLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDL  256 (384)
Q Consensus       177 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  256 (384)
                      +|++|++++|.+... + .+..+++|++|++++|.+. .++.    .+++|++|++++|.+++. +.   ..++|+.|++
T Consensus       216 ~L~~L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l  284 (454)
T 1jl5_A          216 SLESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDV  284 (454)
T ss_dssp             TCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEEC
T ss_pred             cccEEECcCCcCCcc-c-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCccccc-Cc---ccCcCCEEEC
Confidence            444444444443321 1 2344444444444444443 2221    123444444444444421 11   1244555555


Q ss_pred             eccccccccccchhccCCcceEEEccCCccccccccccccc-CCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcc
Q 043452          257 SRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNL-TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL  335 (384)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  335 (384)
                      ++|.+.+. +    ...++|++|++++|.+.+.     ... ++|++|++++|.+++ ++.    .+++|+.|++++|.+
T Consensus       285 s~N~l~~l-~----~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~----~~~~L~~L~L~~N~l  349 (454)
T 1jl5_A          285 SENIFSGL-S----ELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPA----LPPRLERLIASFNHL  349 (454)
T ss_dssp             CSSCCSEE-S----CCCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCC
T ss_pred             cCCccCcc-c----CcCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-ccc----cCCcCCEEECCCCcc
Confidence            55544321 0    0124555555555555431     122 467788888887763 332    247888888888887


Q ss_pred             ccccchhhhccCCccEEEccCccccc--ccccccccC-------------CCCceEeCcCCCCC
Q 043452          336 VGQIPSWIGNFSSLALLTVSKNLLEG--NIPVQLKNL-------------EALEILDVSENNLS  384 (384)
Q Consensus       336 ~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~-------------~~L~~l~l~~~~~s  384 (384)
                      + .+|.   .+++|+.|++++|++++  ..|..+..+             ++|+.|++++|+++
T Consensus       350 ~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~  409 (454)
T 1jl5_A          350 A-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR  409 (454)
T ss_dssp             S-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred             c-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence            7 4555   47788888888888887  567777776             78888888888764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.8e-30  Score=227.30  Aligned_cols=287  Identities=18%  Similarity=0.216  Sum_probs=164.6

Q ss_pred             cccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhh
Q 043452           31 NLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFML  110 (384)
Q Consensus        31 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l  110 (384)
                      +++.++++++.+. .+|..+.  ++|++|+++++.+....+..+.++++|++|++++|.+++..                
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~----------------   94 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH----------------   94 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC----------------
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC----------------
Confidence            6777777777776 4555443  57777888777777666667777777777777777665432                


Q ss_pred             hcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcC
Q 043452          111 SLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTG  190 (384)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  190 (384)
                                ...+..+++|++|+++++.+..++..+.  ++|++|++++|.+. .++...+..+++|++|++++|.+..
T Consensus        95 ----------~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~  161 (332)
T 2ft3_A           95 ----------EKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLEN  161 (332)
T ss_dssp             ----------GGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred             ----------HhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCcccc
Confidence                      1234455666667776666665554433  56777777777665 4444445566777777777766642


Q ss_pred             --cccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccc
Q 043452          191 --SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAP  268 (384)
Q Consensus       191 --~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  268 (384)
                        ..+..+..+ +|++|++++|.+. .++..+   .++|++|++++|.+++..+..+..+++|++|++++|.+.      
T Consensus       162 ~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~------  230 (332)
T 2ft3_A          162 SGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR------  230 (332)
T ss_dssp             GGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC------
T ss_pred             CCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC------
Confidence              333444444 6666677666665 344332   245566666666555444444555555555555555544      


Q ss_pred             hhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhc---
Q 043452          269 LLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGN---  345 (384)
Q Consensus       269 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---  345 (384)
                                         +..+..+..+++|++|++++|.++ .++.. +..+++|+.|++++|.+++..+.++..   
T Consensus       231 -------------------~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  289 (332)
T 2ft3_A          231 -------------------MIENGSLSFLPTLRELHLDNNKLS-RVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGF  289 (332)
T ss_dssp             -------------------CCCTTGGGGCTTCCEEECCSSCCC-BCCTT-GGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred             -------------------cCChhHhhCCCCCCEEECCCCcCe-ecChh-hhcCccCCEEECCCCCCCccChhHcccccc
Confidence                               333334444445555555555544 33322 333455555555555555444444432   


Q ss_pred             ---cCCccEEEccCcccc--cccccccccCCCCceEeCcCC
Q 043452          346 ---FSSLALLTVSKNLLE--GNIPVQLKNLEALEILDVSEN  381 (384)
Q Consensus       346 ---~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~l~l~~~  381 (384)
                         ..+|+.|++++|++.  +..+..|..+++|+.+++++|
T Consensus       290 ~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             ccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence               245666677766655  455556666677777776665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=8.9e-30  Score=241.23  Aligned_cols=288  Identities=22%  Similarity=0.260  Sum_probs=243.5

Q ss_pred             cCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCcc
Q 043452           52 NLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLK  131 (384)
Q Consensus        52 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~  131 (384)
                      .+++++.++++++.+....+..+.++++|++|++++|.+++..                          ...+..+++|+
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~--------------------------~~~~~~l~~L~  102 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID--------------------------TYAFAYAHTIQ  102 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEEC--------------------------TTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCC--------------------------hHHhcCCCCCC
Confidence            4689999999999988666667889999999999999877542                          23567788999


Q ss_pred             EEEccCCCCCCcc-ccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecC
Q 043452          132 VLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSN  210 (384)
Q Consensus       132 ~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  210 (384)
                      +|++++|.+.+++ ..+..+++|+.|++++|.++ .++..+++.+++|++|++++|.+....+..+..+++|++|++++|
T Consensus       103 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          103 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence            9999999998854 55789999999999999987 777777789999999999999999888888999999999999999


Q ss_pred             ccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccc
Q 043452          211 SFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQV  290 (384)
Q Consensus       211 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  290 (384)
                      .+.+ .+.   ..+++|+.|++++|.+.+     +...++|+.|++++|.+.. .+...   .++|+.|++++|.+.+  
T Consensus       182 ~l~~-~~~---~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~-~~~~~---~~~L~~L~L~~n~l~~--  246 (597)
T 3oja_B          182 RLTH-VDL---SLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV-VRGPV---NVELTILKLQHNNLTD--  246 (597)
T ss_dssp             CCSB-CCG---GGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCE-EECSC---CSCCCEEECCSSCCCC--
T ss_pred             CCCC-cCh---hhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccc-ccccc---CCCCCEEECCCCCCCC--
Confidence            9884 332   337899999999998763     2445789999999999873 33222   4789999999999986  


Q ss_pred             cccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccC
Q 043452          291 SPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNL  370 (384)
Q Consensus       291 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  370 (384)
                      +..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|+++ ..|..+..+
T Consensus       247 ~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l  323 (597)
T 3oja_B          247 TAWLLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF  323 (597)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred             ChhhccCCCCCEEECCCCccCCC-CHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccC
Confidence            35678899999999999999844 44556778999999999999984 5777778999999999999998 577778899


Q ss_pred             CCCceEeCcCCCCC
Q 043452          371 EALEILDVSENNLS  384 (384)
Q Consensus       371 ~~L~~l~l~~~~~s  384 (384)
                      ++|+.|++++|+|+
T Consensus       324 ~~L~~L~L~~N~l~  337 (597)
T 3oja_B          324 DRLENLYLDHNSIV  337 (597)
T ss_dssp             TTCSEEECCSSCCC
T ss_pred             CCCCEEECCCCCCC
Confidence            99999999999985

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=1.1e-31  Score=255.01  Aligned_cols=377  Identities=17%  Similarity=0.099  Sum_probs=211.2

Q ss_pred             CCccccEEeCcCcccccccchhhhhc-ccc-ccEEecCCCc-ccc-CCchhhhcCCCCCEEEeecCcccCc----cCccc
Q 043452            3 KFKNLKALDLSYTGINGSLENQGICE-LKN-LIELNLEGNA-IEG-PLPQCLKNLTRLKVFGISSNQLSGS----LPSVI   74 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~-~~~-~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~   74 (384)
                      .+++|++|+|++|.+++.. ...+.. +++ |++|++++|. +.. .++.....+++|++|++++|.+++.    .+...
T Consensus       110 ~~~~L~~L~L~~~~i~~~~-~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLD-LDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA  188 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHH-HHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHH-HHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence            4677777777777665332 333433 344 7777776664 211 1222233566777777766665433    22233


Q ss_pred             cCCCCccEEECCCCcccccc---ccccCCCCCchhhhhhhcccCce-------------------------eeccCCCCC
Q 043452           75 ASLTSLQYLDLSDNYFQGIF---YLSSLGNHSNLEFFMLSLVNNTL-------------------------EVETENWLP  126 (384)
Q Consensus        75 ~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~-------------------------~~~~~~~~~  126 (384)
                      .++++|++|+++++.+++..   ....+.++++|+.|++..+....                         ......+..
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            45566666666665554111   11233445555555555432211                         112233445


Q ss_pred             CCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEe
Q 043452          127 TSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLD  206 (384)
Q Consensus       127 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  206 (384)
                      +++|+.+.++......++..+..+++|++|++++|.+++.....++..+++|++|+++++............+++|++|+
T Consensus       269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~  348 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR  348 (592)
T ss_dssp             CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred             cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence            56666666666544446666667777777777777765444445556777777777763211112222234567777777


Q ss_pred             eec-----------CccCCCcchhHHHhccCCcEEEccCCcCCCccchhccC-CCCCcEEEeec----cccccc----cc
Q 043452          207 ISS-----------NSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISE-MKDLRFLDLSR----NQFSGE----LS  266 (384)
Q Consensus       207 l~~-----------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~----~~~~~~----~~  266 (384)
                      +++           +.+++.....+...+++|++|++..+.+++.....+.. +++|+.|++++    +.+++.    ..
T Consensus       349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~  428 (592)
T 3ogk_B          349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV  428 (592)
T ss_dssp             EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred             eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence            773           34443444555556777777777666666544444443 67777777763    334321    12


Q ss_pred             cchhccCCcceEEEccCCc--cccccccccc-ccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccch-h
Q 043452          267 APLLTGCFSLWLLDLSHNS--FCGQVSPKFM-NLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPS-W  342 (384)
Q Consensus       267 ~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~  342 (384)
                      ...+.++++|++|+++.|.  +++.....+. .+++|++|++++|.+++.....++..+++|++|++++|.+++.... .
T Consensus       429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  508 (592)
T 3ogk_B          429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA  508 (592)
T ss_dssp             HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH
T ss_pred             HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH
Confidence            2334557777777776543  4443333333 3677777777777776544455556677777777777776544333 3


Q ss_pred             hhccCCccEEEccCccccccccccc-ccCCCCceEeCcC
Q 043452          343 IGNFSSLALLTVSKNLLEGNIPVQL-KNLEALEILDVSE  380 (384)
Q Consensus       343 ~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~  380 (384)
                      +..+++|+.|++++|++++...+.+ ..+|.+....+..
T Consensus       509 ~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          509 VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             HHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             HHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence            3567777777777777766544443 3466665554443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.97  E-value=3e-32  Score=259.04  Aligned_cols=380  Identities=14%  Similarity=0.100  Sum_probs=253.5

Q ss_pred             CCccccEEeCcCcccccccc--------------hhhhhccccccEEecCCCccccCCchhhh-cCCCCCEEEeecC-cc
Q 043452            3 KFKNLKALDLSYTGINGSLE--------------NQGICELKNLIELNLEGNAIEGPLPQCLK-NLTRLKVFGISSN-QL   66 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~~   66 (384)
                      ++++|++|++.++....++.              ......+++|++|+++++.+++..+..+. .+++|++|++++| .+
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence            56889999998875322221              12245788999999999888766566665 6899999999988 44


Q ss_pred             cCc-cCccccCCCCccEEECCCCccccccc---cccCCCCCchhhhhhhcccC--ceeeccCCCCCCCCccEEEccCCC-
Q 043452           67 SGS-LPSVIASLTSLQYLDLSDNYFQGIFY---LSSLGNHSNLEFFMLSLVNN--TLEVETENWLPTSQLKVLHLRNCN-  139 (384)
Q Consensus        67 ~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~l~l~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~-  139 (384)
                      ... .+....++++|++|++++|.+++...   ......+++|+.|+++.+..  ...........+++|++|+++++. 
T Consensus       144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~  223 (594)
T 2p1m_B          144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP  223 (594)
T ss_dssp             EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred             CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence            422 34445578999999999988665432   23344778888888886651  111111122346888889888872 


Q ss_pred             CCCccccccccCCCCeEeccCCcc-----------------------------CCCcHHHHhhhCCCccEEEcCCCCCcC
Q 043452          140 LNGTLGFLQKQHDLKSLDLSHNKL-----------------------------VGSFPAWLLQHNTKLEVLRLTNNSFTG  190 (384)
Q Consensus       140 ~~~~~~~~~~~~~L~~L~l~~~~~-----------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~  190 (384)
                      ..+++..+..+++|+.|.+..+..                             .......+...+++|++|++++|.++.
T Consensus       224 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~  303 (594)
T 2p1m_B          224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS  303 (594)
T ss_dssp             HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred             HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH
Confidence            223556666677777776544311                             001111222356888888888887653


Q ss_pred             cc-cccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccC---------CcCCCccchhc-cCCCCCcEEEeecc
Q 043452          191 SL-QLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSK---------NKFEGSISSSI-SEMKDLRFLDLSRN  259 (384)
Q Consensus       191 ~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~---------~~~~~~~~~~~-~~~~~L~~L~l~~~  259 (384)
                      .. ...+..+++|++|+++++ +.+.....+...+++|++|++.+         +.+++.....+ ..+++|+.|.+..+
T Consensus       304 ~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~  382 (594)
T 2p1m_B          304 YDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR  382 (594)
T ss_dssp             HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred             HHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC
Confidence            32 222457788899988887 44445555666688899998843         33443222222 34788999988888


Q ss_pred             ccccccccchhccCCcceEEEcc--C----Ccccc-----cccccccccCCcCeEeCCCCcCCcccchhhhhccccceEE
Q 043452          260 QFSGELSAPLLTGCFSLWLLDLS--H----NSFCG-----QVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVL  328 (384)
Q Consensus       260 ~~~~~~~~~~~~~~~~L~~L~l~--~----~~~~~-----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L  328 (384)
                      .+++.....+...+++|+.|++.  +    +.+++     ..+..+..+++|++|++++ .+++.....+...+++|+.|
T Consensus       383 ~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L  461 (594)
T 2p1m_B          383 QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEML  461 (594)
T ss_dssp             CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEE
T ss_pred             CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEe
Confidence            88755444555568899999998  3    44442     1222356778999999977 66655555555557899999


Q ss_pred             EcCCCccccccchhh-hccCCccEEEccCccccccccc-ccccCCCCceEeCcCCCCC
Q 043452          329 DISNNKLVGQIPSWI-GNFSSLALLTVSKNLLEGNIPV-QLKNLEALEILDVSENNLS  384 (384)
Q Consensus       329 ~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~s  384 (384)
                      ++++|.+++..+.++ .++++|+.|++++|++++.... .+..+++|+.|++++|+++
T Consensus       462 ~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          462 SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             EEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             eccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            999999877666666 6799999999999998755444 3456899999999999864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=1.3e-32  Score=261.37  Aligned_cols=381  Identities=11%  Similarity=0.071  Sum_probs=264.5

Q ss_pred             CCccccEEeCcCccccc---cc-----------chhhhhccccccEEecCCCccccCCchhhhc-CCC-CCEEEeecCcc
Q 043452            3 KFKNLKALDLSYTGING---SL-----------ENQGICELKNLIELNLEGNAIEGPLPQCLKN-LTR-LKVFGISSNQL   66 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~---~~-----------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~-L~~L~l~~~~~   66 (384)
                      ++++|++|++++|....   .+           .......+++|++|+++++.+.+..+..+.+ +++ |++|++++|..
T Consensus        71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~  150 (592)
T 3ogk_B           71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG  150 (592)
T ss_dssp             HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred             hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence            57889999997753210   11           1122337899999999999887666666666 455 99999998862


Q ss_pred             -cC-ccCccccCCCCccEEECCCCcccccc---ccccCCCCCchhhhhhhcccCc---eeeccCCCCCCCCccEEEccCC
Q 043452           67 -SG-SLPSVIASLTSLQYLDLSDNYFQGIF---YLSSLGNHSNLEFFMLSLVNNT---LEVETENWLPTSQLKVLHLRNC  138 (384)
Q Consensus        67 -~~-~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~~~~L~~L~l~~~  138 (384)
                       .. ..+....++++|++|++++|.+++..   .......+++|+.|+++.+...   .......+..+++|+.|+++++
T Consensus       151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~  230 (592)
T 3ogk_B          151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF  230 (592)
T ss_dssp             EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred             cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence             21 12333457899999999999876542   2234566788998888766553   1222333456789999999988


Q ss_pred             CCCCccccccccCCCCeEeccCCccC-------------------------CCcHHHHhhhCCCccEEEcCCCCCcCccc
Q 043452          139 NLNGTLGFLQKQHDLKSLDLSHNKLV-------------------------GSFPAWLLQHNTKLEVLRLTNNSFTGSLQ  193 (384)
Q Consensus       139 ~~~~~~~~~~~~~~L~~L~l~~~~~~-------------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  193 (384)
                      .+.+++..+..+++|+.|.++.....                         ......++..+++|++|++++|.+.....
T Consensus       231 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~  310 (592)
T 3ogk_B          231 EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH  310 (592)
T ss_dssp             BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHH
T ss_pred             cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHH
Confidence            87776666777777777777532110                         11122344567888888888887653332


Q ss_pred             -ccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccC-----------CcCCCccc-hhccCCCCCcEEEeeccc
Q 043452          194 -LSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSK-----------NKFEGSIS-SSISEMKDLRFLDLSRNQ  260 (384)
Q Consensus       194 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~~~-~~~~~~~~L~~L~l~~~~  260 (384)
                       ..+..+++|++|+++ +.+.+.....+...+++|++|++++           +.+++... .....+++|+.|++..+.
T Consensus       311 ~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  389 (592)
T 3ogk_B          311 CTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD  389 (592)
T ss_dssp             HHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred             HHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCC
Confidence             335678888888888 4444455566667788999999983           34443222 224468999999998888


Q ss_pred             cccccccchhccCCcceEEEcc----CCccccc-----ccccccccCCcCeEeCCCCc--CCcccchhhhhccccceEEE
Q 043452          261 FSGELSAPLLTGCFSLWLLDLS----HNSFCGQ-----VSPKFMNLTQLGWLSLDNNN--FSGRISNGFLSSARSLQVLD  329 (384)
Q Consensus       261 ~~~~~~~~~~~~~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~~~~L~~L~  329 (384)
                      +++.....+...+++|+.|++.    .+.+++.     .+..+..+++|++|+++.|.  +++.....+...+++|+.|+
T Consensus       390 l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~  469 (592)
T 3ogk_B          390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML  469 (592)
T ss_dssp             CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred             ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence            8755555555558899999996    4566643     33345678999999997654  66555556666689999999


Q ss_pred             cCCCccccc-cchhhhccCCccEEEccCccccccc-ccccccCCCCceEeCcCCCCC
Q 043452          330 ISNNKLVGQ-IPSWIGNFSSLALLTVSKNLLEGNI-PVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       330 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      +++|.+++. .+..+.++++|+.|++++|++++.. +..+..+++|+.|++++|++|
T Consensus       470 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          470 LGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             ECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             ccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            999998864 4455578999999999999987543 334567999999999999986

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.97  E-value=1.8e-29  Score=230.44  Aligned_cols=330  Identities=22%  Similarity=0.192  Sum_probs=186.5

Q ss_pred             CccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCC-------------CEEEeecCcccCcc
Q 043452            4 FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRL-------------KVFGISSNQLSGSL   70 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-------------~~L~l~~~~~~~~~   70 (384)
                      ...|++|+++++.+ +.+ |..++++++|++|++++|.+.+..|..++++.+|             ++|+++++.+++ +
T Consensus        10 ~~~L~~L~l~~n~l-~~i-P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l   86 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred             cccchhhhcccCch-hhC-ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence            46788888888888 577 4668888888888888888877788877776654             888888887763 3


Q ss_pred             CccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCC-CCccEEEccCCCCCCccccccc
Q 043452           71 PSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPT-SQLKVLHLRNCNLNGTLGFLQK  149 (384)
Q Consensus        71 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~  149 (384)
                      |..   .++|++|++++|.+++. + .   ..++|++++++.+....      +... ++|++|++++|.+.+++ .+..
T Consensus        87 p~~---~~~L~~L~l~~n~l~~l-p-~---~~~~L~~L~l~~n~l~~------l~~~~~~L~~L~L~~n~l~~lp-~~~~  151 (454)
T 1jl5_A           87 PEL---PPHLESLVASCNSLTEL-P-E---LPQSLKSLLVDNNNLKA------LSDLPPLLEYLGVSNNQLEKLP-ELQN  151 (454)
T ss_dssp             CSC---CTTCSEEECCSSCCSSC-C-C---CCTTCCEEECCSSCCSC------CCSCCTTCCEEECCSSCCSSCC-CCTT
T ss_pred             CCC---cCCCCEEEccCCcCCcc-c-c---ccCCCcEEECCCCccCc------ccCCCCCCCEEECcCCCCCCCc-ccCC
Confidence            332   36777888877777653 2 1   23566666666543321      1111 46777777777766655 4667


Q ss_pred             cCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcE
Q 043452          150 QHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVY  229 (384)
Q Consensus       150 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  229 (384)
                      +++|++|++++|.++ .+|.    ..++|++|++++|.+... + .+..+++|++|++++|.+. .++..    .++|++
T Consensus       152 l~~L~~L~l~~N~l~-~lp~----~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~  219 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLES  219 (454)
T ss_dssp             CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCE
T ss_pred             CCCCCEEECCCCcCc-ccCC----CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCC-cCCCC----cCcccE
Confidence            777777777777665 3332    234677777777766653 2 4566677777777776665 23321    246666


Q ss_pred             EEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccc---------------
Q 043452          230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKF---------------  294 (384)
Q Consensus       230 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---------------  294 (384)
                      |++++|.++ ..+ .+..+++|++|++++|.+.+ .+.    .+++|++|++++|.+.+. +...               
T Consensus       220 L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~l-~~~~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          220 IVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTDL-PELPQSLTFLDVSENIFSG  291 (454)
T ss_dssp             EECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSE
T ss_pred             EECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCccccc-CcccCcCCEEECcCCccCc
Confidence            666666665 223 25566666666666666552 111    134555555555554431 1110               


Q ss_pred             --cccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCC
Q 043452          295 --MNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEA  372 (384)
Q Consensus       295 --~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  372 (384)
                        .-.++|++|++++|.+++ +.    ...++|+.|++++|.+++ +|..   +++|+.|++++|++++ .|.   .+++
T Consensus       292 l~~~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~  358 (454)
T 1jl5_A          292 LSELPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQN  358 (454)
T ss_dssp             ESCCCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTT
T ss_pred             ccCcCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhh
Confidence              001345555555555542 11    112478888888887774 4443   5788899999988874 444   4788


Q ss_pred             CceEeCcCCCCC
Q 043452          373 LEILDVSENNLS  384 (384)
Q Consensus       373 L~~l~l~~~~~s  384 (384)
                      |+.|++++|+++
T Consensus       359 L~~L~L~~N~l~  370 (454)
T 1jl5_A          359 LKQLHVEYNPLR  370 (454)
T ss_dssp             CCEEECCSSCCS
T ss_pred             ccEEECCCCCCC
Confidence            999999998874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=9.3e-29  Score=217.43  Aligned_cols=228  Identities=20%  Similarity=0.272  Sum_probs=168.5

Q ss_pred             cccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhcc
Q 043452          146 FLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQ  225 (384)
Q Consensus       146 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  225 (384)
                      .+..+++|++|++++|.++ .+....++.+++|++|++++|.++......   .++|++|++++|.+. ..+...+..++
T Consensus        71 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~---~~~L~~L~l~~n~l~-~~~~~~~~~l~  145 (330)
T 1xku_A           71 DFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKM---PKTLQELRVHENEIT-KVRKSVFNGLN  145 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCSSC---CTTCCEEECCSSCCC-BBCHHHHTTCT
T ss_pred             hhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcCCccChhh---cccccEEECCCCccc-ccCHhHhcCCc
Confidence            3444555555555555554 222222345555666666655555322211   157778888877777 55555555678


Q ss_pred             CCcEEEccCCcCCC--ccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeE
Q 043452          226 KLVYLDMSKNKFEG--SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWL  303 (384)
Q Consensus       226 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  303 (384)
                      +|++|++++|.+..  ..+..+..+++|++|++++|.+. ..+...   .++|++|++++|.+.+..+..+..+++|++|
T Consensus       146 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  221 (330)
T 1xku_A          146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKL  221 (330)
T ss_dssp             TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred             cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            88888888887753  44566778899999999999887 344333   3789999999999998888889999999999


Q ss_pred             eCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccccccccccc------CCCCceEe
Q 043452          304 SLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKN------LEALEILD  377 (384)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~l~  377 (384)
                      ++++|.++ ......+..+++|++|++++|.+. .+|..+..+++|+.|++++|++++..+..|..      .+.|+.++
T Consensus       222 ~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~  299 (330)
T 1xku_A          222 GLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS  299 (330)
T ss_dssp             ECCSSCCC-EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred             ECCCCcCc-eeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceE
Confidence            99999998 444455777899999999999998 78888999999999999999999877777743      47899999


Q ss_pred             CcCCCCC
Q 043452          378 VSENNLS  384 (384)
Q Consensus       378 l~~~~~s  384 (384)
                      +++|+++
T Consensus       300 l~~N~~~  306 (330)
T 1xku_A          300 LFSNPVQ  306 (330)
T ss_dssp             CCSSSSC
T ss_pred             eecCccc
Confidence            9999873

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=4.9e-29  Score=219.33  Aligned_cols=265  Identities=22%  Similarity=0.296  Sum_probs=180.3

Q ss_pred             CCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEE
Q 043452           55 RLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLH  134 (384)
Q Consensus        55 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~  134 (384)
                      +++.++++++.++ .+|..+  .++|++|++++|.+++..                          ...+..+++|++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~--------------------------~~~~~~l~~L~~L~   84 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELR--------------------------KDDFKGLQHLYALV   84 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEEC--------------------------TTTTTTCTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccC--------------------------HhHhhCCCCCcEEE
Confidence            5777777777666 445443  256777777776654331                          12344455566666


Q ss_pred             ccCCCCCCc-cccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccC
Q 043452          135 LRNCNLNGT-LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFT  213 (384)
Q Consensus       135 l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  213 (384)
                      ++++.+..+ +..+..+++|++|++++|.++ .++..++                           ++|++|++++|.+.
T Consensus        85 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---------------------------~~L~~L~l~~n~i~  136 (332)
T 2ft3_A           85 LVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---------------------------SSLVELRIHDNRIR  136 (332)
T ss_dssp             CCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---------------------------TTCCEEECCSSCCC
T ss_pred             CCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---------------------------ccCCEEECCCCccC
Confidence            666555552 444555555555555555544 3332211                           44555555555554


Q ss_pred             CCcchhHHHhccCCcEEEccCCcCCC--ccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccc
Q 043452          214 GRLPQNMSTILQKLVYLDMSKNKFEG--SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVS  291 (384)
Q Consensus       214 ~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  291 (384)
                       ..+...+..+++|++|++++|.++.  ..+..+..+ +|+.|++++|.+. ..+...   .++|++|++++|.+.+..+
T Consensus       137 -~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~  210 (332)
T 2ft3_A          137 -KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIEL  210 (332)
T ss_dssp             -CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCT
T ss_pred             -ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCH
Confidence             3333333335566666666665542  334445555 7888888888876 333333   3689999999999988887


Q ss_pred             ccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccC-
Q 043452          292 PKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNL-  370 (384)
Q Consensus       292 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-  370 (384)
                      ..+..+++|++|++++|.++ .+.+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++++..+..|..+ 
T Consensus       211 ~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  288 (332)
T 2ft3_A          211 EDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG  288 (332)
T ss_dssp             TSSTTCTTCSCCBCCSSCCC-CCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS
T ss_pred             HHhcCCCCCCEEECCCCcCC-cCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccc
Confidence            88999999999999999998 455555778899999999999998 788889999999999999999998777777653 


Q ss_pred             -----CCCceEeCcCCCCC
Q 043452          371 -----EALEILDVSENNLS  384 (384)
Q Consensus       371 -----~~L~~l~l~~~~~s  384 (384)
                           ++|+.+++++|+++
T Consensus       289 ~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          289 FGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CCSSSCCBSEEECCSSSSC
T ss_pred             cccccccccceEeecCccc
Confidence                 67999999999874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.96  E-value=2e-31  Score=253.36  Aligned_cols=375  Identities=16%  Similarity=0.061  Sum_probs=262.9

Q ss_pred             CCccccEEeCcCcccccccchhhhh-ccccccEEecCCC-ccccC-CchhhhcCCCCCEEEeecCcccCccCcc----cc
Q 043452            3 KFKNLKALDLSYTGINGSLENQGIC-ELKNLIELNLEGN-AIEGP-LPQCLKNLTRLKVFGISSNQLSGSLPSV----IA   75 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~----~~   75 (384)
                      .+++|++|++++|.+++.. ...+. .+++|++|++++| .+.+. ++..+..+++|++|++++|.+++..+..    ..
T Consensus       103 ~~~~L~~L~L~~~~~~~~~-~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDC-LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHH-HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             hCCCCCeEEeeCcEEcHHH-HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            4788999999999887444 44454 7899999999998 45432 4445558999999999999876544333    34


Q ss_pred             CCCCccEEECCCCc--cccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCC---------------
Q 043452           76 SLTSLQYLDLSDNY--FQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNC---------------  138 (384)
Q Consensus        76 ~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~---------------  138 (384)
                      .+++|++|+++++.  +..........++++|++|++..+..... ....+..+++|++|++..+               
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~  260 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA  260 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence            77899999999886  32222222344578888888876532211 2222334455555554332               


Q ss_pred             ----------------CCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcc-cccCccccC
Q 043452          139 ----------------NLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSL-QLSNSKLDF  201 (384)
Q Consensus       139 ----------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~  201 (384)
                                      ....++..+..+++|+.|++++|.+++.....+...+++|++|+++++ +.+.. ......+++
T Consensus       261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~  339 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD  339 (594)
T ss_dssp             HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred             HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence                            111244445578999999999998775556666778999999999987 33222 222235889


Q ss_pred             CceEeeec---------CccCCCcchhHHHhccCCcEEEccCCcCCCccchhcc-CCCCCcEEEee--c----ccccc--
Q 043452          202 LHHLDISS---------NSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSIS-EMKDLRFLDLS--R----NQFSG--  263 (384)
Q Consensus       202 L~~L~l~~---------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~--  263 (384)
                      |++|++.+         +.+++.....+...+++|++|.+..+.+++.....+. .+++|+.|+++  +    +.+++  
T Consensus       340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~  419 (594)
T 2p1m_B          340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP  419 (594)
T ss_dssp             CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred             CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence            99999944         3455445556666799999999888888765444444 58999999999  3    34441  


Q ss_pred             --ccccchhccCCcceEEEccCCcccccccccccc-cCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccc
Q 043452          264 --ELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMN-LTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIP  340 (384)
Q Consensus       264 --~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  340 (384)
                        ......+.++++|++|++++ .+++.....+.. +++|++|++++|.+++.....+...+++|++|++++|.+++..+
T Consensus       420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~  498 (594)
T 2p1m_B          420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL  498 (594)
T ss_dssp             THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred             hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence              12223466789999999987 666665555555 88999999999999866666666778999999999999876555


Q ss_pred             h-hhhccCCccEEEccCccccccccccc-ccCCCCceEeCcCC
Q 043452          341 S-WIGNFSSLALLTVSKNLLEGNIPVQL-KNLEALEILDVSEN  381 (384)
Q Consensus       341 ~-~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~  381 (384)
                      . ....+++|+.|++++|+++....+.+ ..+|+|+...+.++
T Consensus       499 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          499 LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             HHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            4 34568999999999999976655555 56888877666554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=1.8e-29  Score=219.86  Aligned_cols=248  Identities=27%  Similarity=0.389  Sum_probs=218.3

Q ss_pred             CCccEEEccCCCCCC---ccccccccCCCCeEeccC-CccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCc
Q 043452          128 SQLKVLHLRNCNLNG---TLGFLQKQHDLKSLDLSH-NKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLH  203 (384)
Q Consensus       128 ~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  203 (384)
                      .+++.|+++++.+.+   ++..+..+++|++|++++ +.+.+.+|..+ ..+++|++|++++|.+....+..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            579999999999985   778899999999999995 88876777654 6899999999999999878888899999999


Q ss_pred             eEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCC-CCcEEEeeccccccccccchhccCCcceEEEcc
Q 043452          204 HLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMK-DLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLS  282 (384)
Q Consensus       204 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  282 (384)
                      +|++++|.+.+..+..+.. +++|++|++++|.+++..+..+..++ +|+.|++++|.+.+..+.. +..++ |++|+++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLS  205 (313)
T ss_dssp             EEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECC
T ss_pred             EEeCCCCccCCcCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECc
Confidence            9999999998767766654 89999999999999877888888887 9999999999998554443 45565 9999999


Q ss_pred             CCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccc
Q 043452          283 HNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGN  362 (384)
Q Consensus       283 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  362 (384)
                      +|.+.+..+..+..+++|+.|++++|.+++..+.  +..+++|++|++++|.+++..|.++..+++|+.|++++|++++.
T Consensus       206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  283 (313)
T 1ogq_A          206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence            9999988889999999999999999999855444  56679999999999999989999999999999999999999988


Q ss_pred             cccccccCCCCceEeCcCCC
Q 043452          363 IPVQLKNLEALEILDVSENN  382 (384)
Q Consensus       363 ~~~~~~~~~~L~~l~l~~~~  382 (384)
                      .|.. ..+++|+.+++++|+
T Consensus       284 ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          284 IPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCCS-TTGGGSCGGGTCSSS
T ss_pred             CCCC-ccccccChHHhcCCC
Confidence            8876 889999999999997

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.3e-27  Score=212.18  Aligned_cols=247  Identities=22%  Similarity=0.235  Sum_probs=134.6

Q ss_pred             EEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCcc
Q 043452          133 LHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSF  212 (384)
Q Consensus       133 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  212 (384)
                      .+.+++.+..+|..+.  ++|++|+++++.++ .++...+..+++|++|++++|.++...+..+..+++|++|++++|.+
T Consensus        36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  112 (353)
T 2z80_A           36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL  112 (353)
T ss_dssp             EECCSTTCSSCCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             eeCCCCCccccccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence            3444444444443222  34555555555544 33333334455555555555555544444455555555555555555


Q ss_pred             CCCcchhHHHhccCCcEEEccCCcCCCccc-hhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccc
Q 043452          213 TGRLPQNMSTILQKLVYLDMSKNKFEGSIS-SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVS  291 (384)
Q Consensus       213 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  291 (384)
                      . ..+...+..+++|++|++++|.++.... ..+..+++|++|++++|..........+.++++|++|++++|.+.+..+
T Consensus       113 ~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  191 (353)
T 2z80_A          113 S-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP  191 (353)
T ss_dssp             S-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             C-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence            4 3443333335555555555555543322 2344455555555555532113333334445555555555555554444


Q ss_pred             ccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcccc-------------------------------ccc
Q 043452          292 PKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVG-------------------------------QIP  340 (384)
Q Consensus       292 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------------------------------~~~  340 (384)
                      ..+..+++|++|++++|.++ .++..++..+++|+.|++++|.+.+                               .+|
T Consensus       192 ~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~  270 (353)
T 2z80_A          192 KSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM  270 (353)
T ss_dssp             TTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred             HHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence            45555555555555555543 3333333344555555555554432                               356


Q ss_pred             hhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452          341 SWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       341 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      .++..+++|+.|++++|++++..+..|..+++|++|++++|+++
T Consensus       271 ~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             HHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             HHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence            77889999999999999999544444689999999999999985

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=2.5e-28  Score=212.62  Aligned_cols=248  Identities=27%  Similarity=0.424  Sum_probs=154.6

Q ss_pred             ccccEEecCCCcccc--CCchhhhcCCCCCEEEeec-CcccCccCccccCCCCccEEECCCCccccccccccCCCCCchh
Q 043452           30 KNLIELNLEGNAIEG--PLPQCLKNLTRLKVFGISS-NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLE  106 (384)
Q Consensus        30 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  106 (384)
                      .+++.|+++++.+.+  .+|..+.++++|++|++++ +.+.+..|..+.++++|++|++++|.+++..+           
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-----------  118 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-----------  118 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-----------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-----------
Confidence            578888888888887  6788888888888888884 77777788888888888888888887664321           


Q ss_pred             hhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC-ccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCC
Q 043452          107 FFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTN  185 (384)
Q Consensus       107 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  185 (384)
                                     ..+..+++|++|+++++.+.+ ++..+..+++|++|++++|.++                     
T Consensus       119 ---------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~---------------------  162 (313)
T 1ogq_A          119 ---------------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS---------------------  162 (313)
T ss_dssp             ---------------GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE---------------------
T ss_pred             ---------------HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc---------------------
Confidence                           122334444445444444442 3444444444555554444443                     


Q ss_pred             CCCcCcccccCcccc-CCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccc
Q 043452          186 NSFTGSLQLSNSKLD-FLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGE  264 (384)
Q Consensus       186 ~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  264 (384)
                          +..+..+..++ +|++|++++|.+.+..+..+.. ++ |++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus       163 ----~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          163 ----GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             ----EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             ----CcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence                33333334443 5555555555554334433332 33 66666666666555556666666777777777766533


Q ss_pred             cccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCc
Q 043452          265 LSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNK  334 (384)
Q Consensus       265 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  334 (384)
                      .+.  +..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.++..  ..+++|+.+++++|.
T Consensus       237 ~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          237 LGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred             cCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCC
Confidence            322  445667777777777776666666777777777777777776555543  455677777777774

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=8.9e-28  Score=208.93  Aligned_cols=227  Identities=24%  Similarity=0.282  Sum_probs=101.9

Q ss_pred             CccEEEccCCCCCCccc-cccccCCCCeEeccCCccCCC--cHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceE
Q 043452          129 QLKVLHLRNCNLNGTLG-FLQKQHDLKSLDLSHNKLVGS--FPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHL  205 (384)
Q Consensus       129 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  205 (384)
                      ++++|+++++.+..++. .+..+++|+.|++++|.++..  .+..+. .+++|++|++++|.+.. .+..+..+++|++|
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L  106 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL  106 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc-cccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence            45555555555544332 234555555555555544311  122222 34555555555554442 22223444455555


Q ss_pred             eeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCc
Q 043452          206 DISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNS  285 (384)
Q Consensus       206 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  285 (384)
                      ++++|.+.+......+..+++|++|++++|.+....+..+..                         +++|++|++++|.
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------l~~L~~L~l~~n~  161 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-------------------------LSSLEVLKMAGNS  161 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-------------------------CTTCCEEECTTCE
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-------------------------CcCCCEEECCCCc
Confidence            555544442111122222444444444444444333333444                         4445555555544


Q ss_pred             ccc-cccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccc
Q 043452          286 FCG-QVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIP  364 (384)
Q Consensus       286 ~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  364 (384)
                      +.+ ..+..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+
T Consensus       162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          162 FQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred             cccccchhHHhhCcCCCEEECCCCCcC-CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence            443 23444444455555555555444 2222223344455555555555444434444445555555555555554444


Q ss_pred             cccccCC-CCceEeCcCCCC
Q 043452          365 VQLKNLE-ALEILDVSENNL  383 (384)
Q Consensus       365 ~~~~~~~-~L~~l~l~~~~~  383 (384)
                      ..+..++ +|+.|++++|+|
T Consensus       241 ~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          241 QELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             SSCCCCCTTCCEEECTTCCE
T ss_pred             HHHHhhhccCCEEEccCCCe
Confidence            4444443 455555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=4.2e-27  Score=215.71  Aligned_cols=247  Identities=23%  Similarity=0.210  Sum_probs=203.7

Q ss_pred             ccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeec
Q 043452          130 LKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISS  209 (384)
Q Consensus       130 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  209 (384)
                      ...++.++..+..++..+.  ++++.|++++|.++ .++...+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus        56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCccCCCCC--CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            4556666666666665433  68899999998886 45445567889999999999988877778888899999999999


Q ss_pred             CccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccc
Q 043452          210 NSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ  289 (384)
Q Consensus       210 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  289 (384)
                      |.+. ..+...+..+++|++|++++|.++......+..+++|+.|++++|...+..+...+.++++|++|++++|.+.+.
T Consensus       133 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          133 NWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            9887 566555556889999999999998766677888999999999996655466666788899999999999988764


Q ss_pred             ccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccccccccccc
Q 043452          290 VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKN  369 (384)
Q Consensus       290 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  369 (384)
                        ..+..+++|++|++++|.++ .+.+..+..+++|+.|++++|.+.+..+.+|.++++|+.|++++|++++..+..|..
T Consensus       212 --~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  288 (452)
T 3zyi_A          212 --PNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP  288 (452)
T ss_dssp             --CCCTTCTTCCEEECTTSCCS-EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred             --ccccccccccEEECcCCcCc-ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence              24678899999999999998 455566778899999999999999888889999999999999999999877778889


Q ss_pred             CCCCceEeCcCCCC
Q 043452          370 LEALEILDVSENNL  383 (384)
Q Consensus       370 ~~~L~~l~l~~~~~  383 (384)
                      +++|+.|++++|+|
T Consensus       289 l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          289 LRYLVELHLHHNPW  302 (452)
T ss_dssp             CTTCCEEECCSSCE
T ss_pred             ccCCCEEEccCCCc
Confidence            99999999999986

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=4.3e-27  Score=214.92  Aligned_cols=247  Identities=22%  Similarity=0.204  Sum_probs=197.5

Q ss_pred             ccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeec
Q 043452          130 LKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISS  209 (384)
Q Consensus       130 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  209 (384)
                      ...++..+..+..+|..+.  ++++.|++++|.+. .++...+..+++|++|++++|.+.......+..+++|++|++++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            4456666666666665443  67888888888876 45545567888888888888888877777788888899999988


Q ss_pred             CccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccc
Q 043452          210 NSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ  289 (384)
Q Consensus       210 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  289 (384)
                      |.+. .++...+..+++|++|++++|.++...+..+..+++|++|++++|......+...+.++++|++|++++|.+...
T Consensus       122 n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  200 (440)
T 3zyj_A          122 NRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI  200 (440)
T ss_dssp             SCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred             CcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence            8887 555554555788999999998888666677888899999999986655466666778889999999999988754


Q ss_pred             ccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccccccccccc
Q 043452          290 VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKN  369 (384)
Q Consensus       290 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  369 (384)
                      .  .+..+++|++|++++|.++ .+.+..+..+++|+.|++++|.+.+..+.+|.++++|+.|+|++|++++..+..|..
T Consensus       201 ~--~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  277 (440)
T 3zyj_A          201 P--NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP  277 (440)
T ss_dssp             C--CCTTCSSCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred             c--ccCCCcccCEEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence            3  4678889999999999888 455556777889999999999998888888999999999999999999877778888


Q ss_pred             CCCCceEeCcCCCC
Q 043452          370 LEALEILDVSENNL  383 (384)
Q Consensus       370 ~~~L~~l~l~~~~~  383 (384)
                      +++|+.|++++|+|
T Consensus       278 l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          278 LHHLERIHLHHNPW  291 (440)
T ss_dssp             CTTCCEEECCSSCE
T ss_pred             ccCCCEEEcCCCCc
Confidence            99999999999986

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=8.4e-27  Score=206.86  Aligned_cols=281  Identities=18%  Similarity=0.158  Sum_probs=168.1

Q ss_pred             ccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhh
Q 043452           28 ELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEF  107 (384)
Q Consensus        28 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  107 (384)
                      .|+.....+.+++.++ .+|..+.  ++|++|+++++.++...+..+.++++|++|++++|.+++.              
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--------------   91 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI--------------   91 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE--------------
T ss_pred             CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc--------------
Confidence            4555555666666666 4555443  4677777777766654444666666666666666655432              


Q ss_pred             hhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCC
Q 043452          108 FMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNS  187 (384)
Q Consensus       108 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  187 (384)
                                                         .+..+..+++|++|++++|.++ .++...++.+++|++|++++|.
T Consensus        92 -----------------------------------~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~  135 (353)
T 2z80_A           92 -----------------------------------EEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNP  135 (353)
T ss_dssp             -----------------------------------CTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCC
T ss_pred             -----------------------------------CHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCC
Confidence                                               1223444555666666666554 4444444566666666666666


Q ss_pred             CcCccc-ccCccccCCceEeeecCc-cCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeecccccccc
Q 043452          188 FTGSLQ-LSNSKLDFLHHLDISSNS-FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGEL  265 (384)
Q Consensus       188 ~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  265 (384)
                      +..... ..+..+++|++|++++|. +. ..+...+..+++|++|++++|.+++..+..+..+++|++|++++|.+. ..
T Consensus       136 l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~  213 (353)
T 2z80_A          136 YKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LL  213 (353)
T ss_dssp             CSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-TH
T ss_pred             CcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cc
Confidence            654433 355666677777777664 33 443333344667777777777766555666667777777777777764 44


Q ss_pred             ccchhccCCcceEEEccCCccccccccccc---ccCCcCeEeCCCCcCCcccc---hhhhhccccceEEEcCCCcccccc
Q 043452          266 SAPLLTGCFSLWLLDLSHNSFCGQVSPKFM---NLTQLGWLSLDNNNFSGRIS---NGFLSSARSLQVLDISNNKLVGQI  339 (384)
Q Consensus       266 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~  339 (384)
                      +...+..+++|++|++++|.+.+..+..+.   ....++.++++++.+.+...   +..+..+++|+.|++++|.++...
T Consensus       214 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~  293 (353)
T 2z80_A          214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP  293 (353)
T ss_dssp             HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC
T ss_pred             hhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccC
Confidence            444455567777777777776654333222   34556677777766653211   223455677888888888777333


Q ss_pred             chhhhccCCccEEEccCccccccc
Q 043452          340 PSWIGNFSSLALLTVSKNLLEGNI  363 (384)
Q Consensus       340 ~~~~~~~~~L~~L~l~~~~~~~~~  363 (384)
                      +..+..+++|+.|++++|++.+..
T Consensus       294 ~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          294 DGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             HHHHhcCCCCCEEEeeCCCccCcC
Confidence            334577788888888888776543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=4.3e-27  Score=204.58  Aligned_cols=251  Identities=22%  Similarity=0.259  Sum_probs=146.9

Q ss_pred             cEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhc
Q 043452           33 IELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSL  112 (384)
Q Consensus        33 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~  112 (384)
                      +.++.+++.++ .+|..+.  ++|++|+++++.++...+..+.++++|++|++++|.++....                 
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-----------------   69 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC-----------------   69 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE-----------------
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC-----------------
Confidence            35556555555 3444332  466666666666664444445666666666666665542210                 


Q ss_pred             ccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcc
Q 043452          113 VNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSL  192 (384)
Q Consensus       113 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  192 (384)
                             ....+..+++|++|+++++.+..++..+..+++|+.|++++|.+++..+...+..+++|++|++++|.+....
T Consensus        70 -------~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  142 (306)
T 2z66_A           70 -------CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  142 (306)
T ss_dssp             -------EEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred             -------cccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence                   0011223456666666666665555566677777777777776653222233556677777777777766555


Q ss_pred             cccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhcc
Q 043452          193 QLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTG  272 (384)
Q Consensus       193 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  272 (384)
                      +..+..+++|++|++++|.+.+......+..+++|++|++++|.+++..+..+..+++|++|++++|.+. ..+...+..
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~  221 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKC  221 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS-BCCSGGGTT
T ss_pred             hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC-ccChhhccC
Confidence            6666667777777777776653222222233566777777766666555556666666666666666665 233333455


Q ss_pred             CCcceEEEccCCcccccccccccccC-CcCeEeCCCCcCC
Q 043452          273 CFSLWLLDLSHNSFCGQVSPKFMNLT-QLGWLSLDNNNFS  311 (384)
Q Consensus       273 ~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~  311 (384)
                      +++|++|++++|.+.+..+..+..++ +|++|++++|.++
T Consensus       222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            66666666666666655555555553 5666666666655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.8e-26  Score=198.56  Aligned_cols=225  Identities=18%  Similarity=0.160  Sum_probs=135.5

Q ss_pred             cEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecC
Q 043452          131 KVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSN  210 (384)
Q Consensus       131 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  210 (384)
                      +.++.++..+..++..+  .++|+.|+++++.++ .++...+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            45555555555554432  356777777777665 444444456677777777777666555666666677777777776


Q ss_pred             c-cCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccc
Q 043452          211 S-FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ  289 (384)
Q Consensus       211 ~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  289 (384)
                      . +. ......+..+++|++|++++|.++...+..+..+++|++|++++|.+. ..+...+..+++|++|++++|.+.+.
T Consensus        91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCccccc
Confidence            5 44 333333333666777777666666555555666666666666666665 33444455566666666666666655


Q ss_pred             ccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452          290 VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG  361 (384)
Q Consensus       290 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  361 (384)
                      .+..+..+++|++|++++|.+++ ..+..+..+++|+.|++++|.+.+..+.++..+++|+.|++++|++..
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             CHHHhcCccccCEEECCCCcccc-cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            55555666666666666666652 223334455666666666666665555556666666666666666553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=4.2e-27  Score=204.94  Aligned_cols=249  Identities=23%  Similarity=0.212  Sum_probs=197.4

Q ss_pred             CCCCccEEEccCCCCCCccccccccCCCCeEeccCCccC-CCcHHHHh------hhCCCccEEEcCCCCCcCcccccC--
Q 043452          126 PTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLV-GSFPAWLL------QHNTKLEVLRLTNNSFTGSLQLSN--  196 (384)
Q Consensus       126 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~--  196 (384)
                      ..++|++++++++.+ .++..+...  |+.|+++++.+. ..++....      ..+++|++|++++|.+.+..+..+  
T Consensus        41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            445677777777777 555544443  888888888773 34444332      257999999999999987666655  


Q ss_pred             ccccCCceEeeecCccCCCcchhHHHhc-----cCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccc---cc
Q 043452          197 SKLDFLHHLDISSNSFTGRLPQNMSTIL-----QKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELS---AP  268 (384)
Q Consensus       197 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~  268 (384)
                      ..+++|++|++++|.+.+. +..+.. +     ++|++|++++|.+++..+..+..+++|++|++++|.+.+...   ..
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~-l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAE-LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHH-HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHH-HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence            8899999999999999854 655554 4     899999999999998887889999999999999999764321   22


Q ss_pred             hhccCCcceEEEccCCccccc---ccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhc
Q 043452          269 LLTGCFSLWLLDLSHNSFCGQ---VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGN  345 (384)
Q Consensus       269 ~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  345 (384)
                      .+.++++|++|++++|.+.+.   ....+..+++|++|++++|.+++..+...+..+++|++|++++|.++ .+|..+. 
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-  273 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-  273 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence            347789999999999999842   22344577999999999999986554444556789999999999998 6676655 


Q ss_pred             cCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452          346 FSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       346 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                       ++|+.|++++|++++. |. +..+++|+.|++++|+|+
T Consensus       274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence             8999999999999966 55 899999999999999986

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=2.3e-25  Score=194.95  Aligned_cols=233  Identities=20%  Similarity=0.228  Sum_probs=137.2

Q ss_pred             CCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEee
Q 043452          128 SQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDI  207 (384)
Q Consensus       128 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  207 (384)
                      ++++.|+++++.+..++..+..+++|++|++++|.++ .+|..+ ..+++|++|++++|.+. ..+..+..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            3455555555555544444444555555555555444 333322 34444555555444444 22333444444444444


Q ss_pred             ecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccc
Q 043452          208 SSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFC  287 (384)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  287 (384)
                      ++|.+.+.++..+..       ..         ....+..+++|++|++++|.+. ..+.. +.++++|++|++++|.+.
T Consensus       158 ~~n~~~~~~p~~~~~-------~~---------~~~~~~~l~~L~~L~L~~n~l~-~lp~~-l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          158 RACPELTELPEPLAS-------TD---------ASGEHQGLVNLQSLRLEWTGIR-SLPAS-IANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEETTCCCCCSCSEE-------EC----------CCCEEESTTCCEEEEEEECCC-CCCGG-GGGCTTCCEEEEESSCCC
T ss_pred             CCCCCccccChhHhh-------cc---------chhhhccCCCCCEEECcCCCcC-cchHh-hcCCCCCCEEEccCCCCC
Confidence            444433333322110       00         0011234677777777777776 33333 556777777777777777


Q ss_pred             ccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccccccccc
Q 043452          288 GQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQL  367 (384)
Q Consensus       288 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  367 (384)
                      + .+..+..+++|++|++++|.+.+.++. .+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|++.+..|..+
T Consensus       220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          220 A-LGPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             C-CCGGGGGCTTCCEEECTTCTTCCBCCC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             c-CchhhccCCCCCEEECcCCcchhhhHH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence            4 344567777788888877777655443 35556778888888877777777777788888888888887777778888


Q ss_pred             ccCCCCceEeCcCCCC
Q 043452          368 KNLEALEILDVSENNL  383 (384)
Q Consensus       368 ~~~~~L~~l~l~~~~~  383 (384)
                      .++++|+.+++..+.+
T Consensus       298 ~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          298 AQLPANCIILVPPHLQ  313 (328)
T ss_dssp             GGSCTTCEEECCGGGS
T ss_pred             hhccCceEEeCCHHHH
Confidence            8888888887776543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=4.8e-25  Score=192.96  Aligned_cols=234  Identities=18%  Similarity=0.185  Sum_probs=170.8

Q ss_pred             CccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEE
Q 043452            4 FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYL   83 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L   83 (384)
                      .+++++|+++++.+. .++ ..+.++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+.++++|++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFP-DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCS-SCC-SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCch-hcC-hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            356777788777776 563 44666778888888877777 67777777788888888877777 667777777888888


Q ss_pred             ECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCcc
Q 043452           84 DLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKL  163 (384)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  163 (384)
                      ++++|.+.+..+... .                .......+..+++|++|++++|.+..++..+..+++|++|++++|.+
T Consensus       156 ~L~~n~~~~~~p~~~-~----------------~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l  218 (328)
T 4fcg_A          156 SIRACPELTELPEPL-A----------------STDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL  218 (328)
T ss_dssp             EEEEETTCCCCCSCS-E----------------EEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCC
T ss_pred             ECCCCCCccccChhH-h----------------hccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCC
Confidence            887766554432110 0                01112335567888888888888887777788888888888888888


Q ss_pred             CCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccch
Q 043452          164 VGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISS  243 (384)
Q Consensus       164 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  243 (384)
                      + .++.. +..+++|++|++++|.+....+..+..+++|++|++++|.+.+.++..+.. +++|++|++++|.+.+..|.
T Consensus       219 ~-~l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          219 S-ALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             C-CCCGG-GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG-CTTCCEEECTTCTTCCCCCG
T ss_pred             C-cCchh-hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc-CCCCCEEeCCCCCchhhccH
Confidence            7 45443 567888888888888887777777888888888888888777666666543 77888888888877777778


Q ss_pred             hccCCCCCcEEEeecccc
Q 043452          244 SISEMKDLRFLDLSRNQF  261 (384)
Q Consensus       244 ~~~~~~~L~~L~l~~~~~  261 (384)
                      .+..+++++.+++..+.+
T Consensus       296 ~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          296 LIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             GGGGSCTTCEEECCGGGS
T ss_pred             HHhhccCceEEeCCHHHH
Confidence            888888888887776554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1.4e-25  Score=192.91  Aligned_cols=251  Identities=22%  Similarity=0.225  Sum_probs=195.8

Q ss_pred             CCCccEEEccCCCCCCcc-ccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCC-CcCcccccCccccCCce
Q 043452          127 TSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNS-FTGSLQLSNSKLDFLHH  204 (384)
Q Consensus       127 ~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~  204 (384)
                      .+++++|+++++.+..++ ..+..+++|+.|++++|.++ .+....+..+++|++|++++|. +....+..+..+++|++
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            468999999999988854 56888999999999999886 4444445688999999999997 77666778888999999


Q ss_pred             EeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCC
Q 043452          205 LDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHN  284 (384)
Q Consensus       205 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  284 (384)
                      |++++|.+. ..+...+..+++|++|++++|.++...+..+..+++|++|++++|.+. ..+...+.++++|++|++++|
T Consensus       110 L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n  187 (285)
T 1ozn_A          110 LHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQN  187 (285)
T ss_dssp             EECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCC
Confidence            999999988 444444445889999999999998777777888899999999999887 555556777899999999999


Q ss_pred             cccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccc
Q 043452          285 SFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIP  364 (384)
Q Consensus       285 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  364 (384)
                      .+.+..+..+..+++|+.|++++|.++ .++...+..+++|+.|++++|.+...-+.. .....++.+..+.+.+....|
T Consensus       188 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p  265 (285)
T 1ozn_A          188 RVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLP  265 (285)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEES
T ss_pred             cccccCHhHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCc
Confidence            998888888888999999999999988 566566777899999999999876432211 112234555567777777777


Q ss_pred             ccccc--CCCCceEeCcCCC
Q 043452          365 VQLKN--LEALEILDVSENN  382 (384)
Q Consensus       365 ~~~~~--~~~L~~l~l~~~~  382 (384)
                      ..+..  +..++..++.||+
T Consensus       266 ~~l~g~~l~~l~~~~l~~C~  285 (285)
T 1ozn_A          266 QRLAGRDLKRLAANDLQGCA  285 (285)
T ss_dssp             GGGTTCBGGGSCGGGSCCC-
T ss_pred             hHhCCcChhhcCHHHhccCC
Confidence            77644  5677777788774

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=3.3e-26  Score=199.72  Aligned_cols=260  Identities=20%  Similarity=0.240  Sum_probs=143.0

Q ss_pred             ccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECC
Q 043452            7 LKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLS   86 (384)
Q Consensus         7 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~   86 (384)
                      ++..+++.+.+. ......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            444555555554 3334455566677777777777776555667777777777777777664332  6667777777777


Q ss_pred             CCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCC
Q 043452           87 DNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGS  166 (384)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  166 (384)
                      +|.+++..                                                      ..++|+.|++++|.+++ 
T Consensus        89 ~n~l~~l~------------------------------------------------------~~~~L~~L~l~~n~l~~-  113 (317)
T 3o53_A           89 NNYVQELL------------------------------------------------------VGPSIETLHAANNNISR-  113 (317)
T ss_dssp             SSEEEEEE------------------------------------------------------ECTTCCEEECCSSCCSE-
T ss_pred             CCcccccc------------------------------------------------------CCCCcCEEECCCCccCC-
Confidence            66554321                                                      11344444444444431 


Q ss_pred             cHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhcc
Q 043452          167 FPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSIS  246 (384)
Q Consensus       167 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  246 (384)
                      ++.   ..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+...+++|++|++++|.++...  ...
T Consensus       114 ~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~  188 (317)
T 3o53_A          114 VSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQV  188 (317)
T ss_dssp             EEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCC
T ss_pred             cCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--ccc
Confidence            111   123556666666666665555555666666666666666664334444444566777777776665331  122


Q ss_pred             CCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccce
Q 043452          247 EMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQ  326 (384)
Q Consensus       247 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~  326 (384)
                      .+++|++|++++|.+.+ .+.. +..+++|++|++++|.+.. .+..+..+++|+.|++++|.+.....+.++..++.|+
T Consensus       189 ~l~~L~~L~Ls~N~l~~-l~~~-~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~  265 (317)
T 3o53_A          189 VFAKLKTLDLSSNKLAF-MGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ  265 (317)
T ss_dssp             CCTTCCEEECCSSCCCE-ECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred             ccccCCEEECCCCcCCc-chhh-hcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence            35666666666666652 2222 3445566666666665552 3444455555556666555554223333444445555


Q ss_pred             EEEcCC
Q 043452          327 VLDISN  332 (384)
Q Consensus       327 ~L~l~~  332 (384)
                      .+++.+
T Consensus       266 ~l~l~~  271 (317)
T 3o53_A          266 TVAKQT  271 (317)
T ss_dssp             HHHHHH
T ss_pred             EEECCC
Confidence            555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.6e-25  Score=194.05  Aligned_cols=218  Identities=24%  Similarity=0.219  Sum_probs=105.3

Q ss_pred             cccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCC
Q 043452          148 QKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKL  227 (384)
Q Consensus       148 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  227 (384)
                      ..+++|++|++++|.++ .++...++.+++|++|++++|.+....+  +..+++|++|++++|.+. ..+.     .++|
T Consensus        31 ~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~~-----~~~L  101 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSI  101 (317)
T ss_dssp             TTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEEE-----CTTC
T ss_pred             ccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-cccC-----CCCc
Confidence            33445555555555554 2222233455555555555555543322  445555555555555544 2221     2455


Q ss_pred             cEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccccccc-ccCCcCeEeCC
Q 043452          228 VYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFM-NLTQLGWLSLD  306 (384)
Q Consensus       228 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~  306 (384)
                      ++|++++|.+++..+.   .+++|++|++++|.+. ......+..+++|++|++++|.+.+..+..+. .+++|++|+++
T Consensus       102 ~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  177 (317)
T 3o53_A          102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ  177 (317)
T ss_dssp             CEEECCSSCCSEEEEC---CCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred             CEEECCCCccCCcCcc---ccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence            5555555555433221   2345555555555554 22223334455555555555555544443332 34555555555


Q ss_pred             CCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452          307 NNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL  383 (384)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  383 (384)
                      +|.+++. +..  ..+++|++|++++|.+.+ ++..+..+++|+.|++++|+++ ..|..+..+++|+.|++++|++
T Consensus       178 ~N~l~~~-~~~--~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          178 YNFIYDV-KGQ--VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             TSCCCEE-ECC--CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCC
T ss_pred             CCcCccc-ccc--cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCc
Confidence            5555422 111  123555555555555552 3333555555555555555555 3344455555555555555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.2e-24  Score=198.76  Aligned_cols=226  Identities=23%  Similarity=0.244  Sum_probs=102.6

Q ss_pred             ccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhh
Q 043452           30 KNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFM  109 (384)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~  109 (384)
                      ++++.|++++|.+....+..|.++++|++|++++|.+....+..+.++++|++|++++|.++...               
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~---------------  128 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP---------------  128 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC---------------
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC---------------
Confidence            45666666666665544555666666666666666655555555666666666666666554331               


Q ss_pred             hhcccCceeeccCCCCCCCCccEEEccCCCCCCcc-ccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCC
Q 043452          110 LSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSF  188 (384)
Q Consensus       110 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  188 (384)
                                 ...+..+++|++|+++++.+..++ ..+..+++|+.|+++++.....++...+..+++|++|++++|.+
T Consensus       129 -----------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  197 (440)
T 3zyj_A          129 -----------NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL  197 (440)
T ss_dssp             -----------TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred             -----------HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence                       122333444444444444444322 23344444444444443322233333334444444444444444


Q ss_pred             cCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccc
Q 043452          189 TGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAP  268 (384)
Q Consensus       189 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  268 (384)
                      +...  .+..+++|++|++++|.+. ......+..+++|+.|++++|.++...+..+..+++|+.|++++|.++ ..+..
T Consensus       198 ~~~~--~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~  273 (440)
T 3zyj_A          198 REIP--NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHD  273 (440)
T ss_dssp             SSCC--CCTTCSSCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTT
T ss_pred             cccc--ccCCCcccCEEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChh
Confidence            3221  2334444444444444443 222222222444444444444444333344444444444444444443 23333


Q ss_pred             hhccCCcceEEEccCCc
Q 043452          269 LLTGCFSLWLLDLSHNS  285 (384)
Q Consensus       269 ~~~~~~~L~~L~l~~~~  285 (384)
                      .+..+++|+.|++++|+
T Consensus       274 ~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          274 LFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TTSSCTTCCEEECCSSC
T ss_pred             HhccccCCCEEEcCCCC
Confidence            33344444444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=1.4e-24  Score=198.92  Aligned_cols=226  Identities=24%  Similarity=0.221  Sum_probs=107.3

Q ss_pred             ccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhh
Q 043452           30 KNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFM  109 (384)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~  109 (384)
                      +++++|++++|.+.+..+..|..+++|++|++++|.+....+..+.++++|++|++++|.++...               
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------  139 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP---------------  139 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC---------------
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC---------------
Confidence            45566666666555544555556666666666666555555555555666666666655554331               


Q ss_pred             hhcccCceeeccCCCCCCCCccEEEccCCCCCCcc-ccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCC
Q 043452          110 LSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSF  188 (384)
Q Consensus       110 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  188 (384)
                                 ...+..+++|++|++++|.+..++ ..+..+++|+.|+++++...+.++...+..+++|++|++++|.+
T Consensus       140 -----------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          140 -----------SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI  208 (452)
T ss_dssp             -----------TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             -----------hhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence                       122334444555555544444422 23444455555555543332234433344445555555555444


Q ss_pred             cCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccc
Q 043452          189 TGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAP  268 (384)
Q Consensus       189 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  268 (384)
                      ....  .+..+++|++|++++|.+. ......+..+++|+.|++++|.++...+..+..+++|+.|++++|.+. ..+..
T Consensus       209 ~~~~--~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~  284 (452)
T 3zyi_A          209 KDMP--NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHD  284 (452)
T ss_dssp             SSCC--CCTTCTTCCEEECTTSCCS-EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTT
T ss_pred             cccc--cccccccccEEECcCCcCc-ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChH
Confidence            4321  2334444555555554444 222222222444555555554444444444444445555555554444 33333


Q ss_pred             hhccCCcceEEEccCCc
Q 043452          269 LLTGCFSLWLLDLSHNS  285 (384)
Q Consensus       269 ~~~~~~~L~~L~l~~~~  285 (384)
                      .+..+++|+.|++++|+
T Consensus       285 ~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          285 LFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             SSTTCTTCCEEECCSSC
T ss_pred             HhccccCCCEEEccCCC
Confidence            33444444555544443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.8e-24  Score=202.06  Aligned_cols=265  Identities=22%  Similarity=0.228  Sum_probs=142.8

Q ss_pred             ccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhh
Q 043452           30 KNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFM  109 (384)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~  109 (384)
                      .+++.|+++++.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|.+++...              
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~--------------   98 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV--------------   98 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC--------------
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC--------------
Confidence            45777777777776 5555554  67777777777766 3443   45777777777776654310              


Q ss_pred             hhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCc
Q 043452          110 LSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFT  189 (384)
Q Consensus       110 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  189 (384)
                                      .+++|++|++++|.+..++.   .+++|+.|++++|.++ .+|.    .+++|++|++++|.+.
T Consensus        99 ----------------~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~  154 (622)
T 3g06_A           99 ----------------LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLA  154 (622)
T ss_dssp             ----------------CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS
T ss_pred             ----------------CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCC
Confidence                            23455555555555544433   3455555555555554 2332    2355555555555554


Q ss_pred             CcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccch
Q 043452          190 GSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPL  269 (384)
Q Consensus       190 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  269 (384)
                      ....    .+++|+.|++++|.+. .++    ..+++|+.|++++|.+++.. .   ..++|+.|++++|.+. ..+   
T Consensus       155 ~l~~----~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~-~l~---  217 (622)
T 3g06_A          155 SLPA----LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLT-SLP---  217 (622)
T ss_dssp             CCCC----CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCS-SCC---
T ss_pred             CcCC----ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCCCC-C---ccchhhEEECcCCccc-ccC---
Confidence            3211    2345555566555555 333    22455666666666555321 1   1255666666666554 211   


Q ss_pred             hccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCc
Q 043452          270 LTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSL  349 (384)
Q Consensus       270 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  349 (384)
                       ..+++|+.|++++|.+.+. +   ..+++|+.|++++|.++ .++.    .+++|+.|++++|.++ .+|..+.++++|
T Consensus       218 -~~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L  286 (622)
T 3g06_A          218 -ALPSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSE  286 (622)
T ss_dssp             -CCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTT
T ss_pred             -CCCCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhcccc
Confidence             1235566666666655542 2   23355666666666655 3332    3355666666666665 445556666666


Q ss_pred             cEEEccCccccccccccc
Q 043452          350 ALLTVSKNLLEGNIPVQL  367 (384)
Q Consensus       350 ~~L~l~~~~~~~~~~~~~  367 (384)
                      +.|++++|++.+..+..+
T Consensus       287 ~~L~L~~N~l~~~~~~~l  304 (622)
T 3g06_A          287 TTVNLEGNPLSERTLQAL  304 (622)
T ss_dssp             CEEECCSCCCCHHHHHHH
T ss_pred             CEEEecCCCCCCcCHHHH
Confidence            666666666655544443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=1.7e-23  Score=196.65  Aligned_cols=258  Identities=23%  Similarity=0.251  Sum_probs=211.2

Q ss_pred             CCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEE
Q 043452           54 TRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVL  133 (384)
Q Consensus        54 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L  133 (384)
                      .+++.|+++++.++ .+|..+.  ++|++|++++|.++....                              .+++|++|
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~------------------------------~l~~L~~L   86 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA------------------------------LPPELRTL   86 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC------------------------------CCTTCCEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC------------------------------cCCCCCEE
Confidence            46999999999988 6666554  899999999998774310                              24689999


Q ss_pred             EccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccC
Q 043452          134 HLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFT  213 (384)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  213 (384)
                      ++++|.+..++.   .+++|+.|++++|.++ .++.    .+++|+.|++++|.++....    .+++|++|++++|.+.
T Consensus        87 ~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~  154 (622)
T 3g06_A           87 EVSGNQLTSLPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLA  154 (622)
T ss_dssp             EECSCCCSCCCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS
T ss_pred             EcCCCcCCcCCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCC
Confidence            999999888776   7799999999999887 4554    56899999999998885433    2489999999999987


Q ss_pred             CCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccccc
Q 043452          214 GRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK  293 (384)
Q Consensus       214 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  293 (384)
                       .++.    .+++|+.|++++|.++...    ..+++|+.|++++|.+.+ .+.    ..++|+.|++++|.+.... . 
T Consensus       155 -~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~l~-~-  218 (622)
T 3g06_A          155 -SLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTSLP-A-  218 (622)
T ss_dssp             -CCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSCC-C-
T ss_pred             -CcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCC-CCC----ccchhhEEECcCCcccccC-C-
Confidence             4443    3578999999999998543    456899999999999873 222    3589999999999988533 2 


Q ss_pred             ccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCC
Q 043452          294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEAL  373 (384)
Q Consensus       294 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  373 (384)
                        .+++|+.|++++|.+++ ++    ..+++|+.|++++|.++ .+|.   .+++|+.|++++|+++ .+|..+.++++|
T Consensus       219 --~~~~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L  286 (622)
T 3g06_A          219 --LPSGLKELIVSGNRLTS-LP----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE  286 (622)
T ss_dssp             --CCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT
T ss_pred             --CCCCCCEEEccCCccCc-CC----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcccc
Confidence              24789999999999983 44    34589999999999998 5555   6789999999999999 678889999999


Q ss_pred             ceEeCcCCCCC
Q 043452          374 EILDVSENNLS  384 (384)
Q Consensus       374 ~~l~l~~~~~s  384 (384)
                      +.|++++|+|+
T Consensus       287 ~~L~L~~N~l~  297 (622)
T 3g06_A          287 TTVNLEGNPLS  297 (622)
T ss_dssp             CEEECCSCCCC
T ss_pred             CEEEecCCCCC
Confidence            99999999985

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=5.3e-24  Score=182.21  Aligned_cols=207  Identities=21%  Similarity=0.203  Sum_probs=127.3

Q ss_pred             CCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEE
Q 043452          151 HDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYL  230 (384)
Q Consensus       151 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  230 (384)
                      ++|+.|+++++.++ .++...+..+++|++|++++|.+.......+..+++|++|++++|.+. ..+...+..+++|++|
T Consensus        28 ~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred             CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEE
Confidence            46777777777765 444434456677777777777776655556667777777777777766 3333333346677777


Q ss_pred             EccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcC----eEeCC
Q 043452          231 DMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLG----WLSLD  306 (384)
Q Consensus       231 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~l~l~  306 (384)
                      ++++|.+....+..+..+++|++|++++|.+.+......+.++++|++|++++|.+.+..+..+..++.|+    .++++
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls  185 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence            77777766555545666677777777777665322233455566677777777666655555555555555    56666


Q ss_pred             CCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452          307 NNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG  361 (384)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  361 (384)
                      +|.++ .++...+.. .+|+.|++++|.+++..+..+..+++|+.|++++|++..
T Consensus       186 ~n~l~-~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          186 LNPMN-FIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             SSCCC-EECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CCccc-ccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            66665 333333322 366666666666665444555666666666666666653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.9e-24  Score=199.20  Aligned_cols=237  Identities=20%  Similarity=0.162  Sum_probs=170.4

Q ss_pred             CCCCccEEEccCCCCCCc-cccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCce
Q 043452          126 PTSQLKVLHLRNCNLNGT-LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHH  204 (384)
Q Consensus       126 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  204 (384)
                      .+++|++|+++++.+.++ +..+..+++|+.|++++|.+++..+   +..+++|++|++++|.++...     ..++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~  103 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGPSIET  103 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence            455788888888888774 4577888888888888888764444   567788888888888776433     2377888


Q ss_pred             EeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCC
Q 043452          205 LDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHN  284 (384)
Q Consensus       205 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  284 (384)
                      |++++|.+.+..+.    .+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+...+++|++|++++|
T Consensus       104 L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          104 LHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             EECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            88888887743332    25678888888888877767677777888888888888775555555556788888888888


Q ss_pred             cccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccc-ccc
Q 043452          285 SFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE-GNI  363 (384)
Q Consensus       285 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~  363 (384)
                      .+.+..+  ...+++|+.|++++|.+++ +++. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +..
T Consensus       180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~-~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~  254 (487)
T 3oja_A          180 FIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL  254 (487)
T ss_dssp             CCCEEEC--CCCCTTCCEEECCSSCCCE-ECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred             ccccccc--cccCCCCCEEECCCCCCCC-CCHh-HcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcch
Confidence            8775533  2347778888888888873 3333 556678888888888877 46777777788888888888876 445


Q ss_pred             ccccccCCCCceEeCc
Q 043452          364 PVQLKNLEALEILDVS  379 (384)
Q Consensus       364 ~~~~~~~~~L~~l~l~  379 (384)
                      |..+..++.|+.++++
T Consensus       255 ~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          255 RDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHHHTTCHHHHHHHHH
T ss_pred             HHHHHhCCCCcEEecc
Confidence            5566667777666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=2.3e-23  Score=177.45  Aligned_cols=204  Identities=24%  Similarity=0.307  Sum_probs=146.3

Q ss_pred             CCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEE
Q 043452          151 HDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYL  230 (384)
Q Consensus       151 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  230 (384)
                      ...+.++++++.++ .+|..+   .+++++|+++++.+.......+..+++|++|++++|.+. .++...+..+++|++|
T Consensus        16 ~~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL   90 (270)
T ss_dssp             TTTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEE
T ss_pred             CCCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEE
Confidence            35778888888776 566432   367888888888888776667788888888888888877 5665555557788888


Q ss_pred             EccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcC
Q 043452          231 DMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNF  310 (384)
Q Consensus       231 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  310 (384)
                      ++++|.++...+..+..+++|++|++++|.+. ..+...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus        91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  169 (270)
T 2o6q_A           91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL  169 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence            88888877666666677778888888887776 44445556677777777777777766665666777777777777777


Q ss_pred             CcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452          311 SGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG  361 (384)
Q Consensus       311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  361 (384)
                      + .++...+..+++|+.|++++|.+++..+.++..+++|+.|++++|++..
T Consensus       170 ~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          170 K-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             S-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             c-EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            6 4444455566777777777777775555566777777777777777653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.4e-23  Score=193.34  Aligned_cols=220  Identities=24%  Similarity=0.206  Sum_probs=184.3

Q ss_pred             ccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccC
Q 043452          147 LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK  226 (384)
Q Consensus       147 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  226 (384)
                      ...+++|+.|++++|.+++ ++...+..+++|++|++++|.+++..+  +..+++|++|++++|.+. ..+.     .++
T Consensus        30 ~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~  100 (487)
T 3oja_A           30 RQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPS  100 (487)
T ss_dssp             STTGGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTT
T ss_pred             cccCCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCC
Confidence            3345589999999999984 444445789999999999999886554  889999999999999987 4442     379


Q ss_pred             CcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccccccc-ccCCcCeEeC
Q 043452          227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFM-NLTQLGWLSL  305 (384)
Q Consensus       227 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l  305 (384)
                      |++|++++|.+++..+.   .+++|+.|++++|.+.+ .....+..+++|++|++++|.+.+..+..+. .+++|++|++
T Consensus       101 L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L  176 (487)
T 3oja_A          101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (487)
T ss_dssp             CCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCS-GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             cCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCC-CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence            99999999999866543   46899999999999984 3444557799999999999999988887776 7899999999


Q ss_pred             CCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452          306 DNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      ++|.+++. +.  ...+++|+.|++++|.+++ +|..+..+++|+.|++++|++++ +|..+..+++|+.|++++|+++
T Consensus       177 s~N~l~~~-~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          177 QYNFIYDV-KG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             TTSCCCEE-EC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             CCCccccc-cc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            99999844 32  2247899999999999995 55568999999999999999994 6778999999999999999975

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=9e-24  Score=187.83  Aligned_cols=252  Identities=17%  Similarity=0.192  Sum_probs=156.2

Q ss_pred             EEccCCCCCC-ccccccccCCCCeEeccCCccCCCcHH---HHhhhCC-CccEEEcCCCCCcCcccccCccc-----cCC
Q 043452          133 LHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPA---WLLQHNT-KLEVLRLTNNSFTGSLQLSNSKL-----DFL  202 (384)
Q Consensus       133 L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L  202 (384)
                      +.++.+.+.+ ++..+...++|++|++++|.+++..+.   ..+..++ +|++|++++|.+.......+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4455666665 444455555578888887777643331   3334556 78888888777776555455443     778


Q ss_pred             ceEeeecCccCCCcchhHHHh---c-cCCcEEEccCCcCCCccchhc----cC-CCCCcEEEeeccccccccccc---hh
Q 043452          203 HHLDISSNSFTGRLPQNMSTI---L-QKLVYLDMSKNKFEGSISSSI----SE-MKDLRFLDLSRNQFSGELSAP---LL  270 (384)
Q Consensus       203 ~~L~l~~~~~~~~~~~~~~~~---~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~~~---~~  270 (384)
                      ++|++++|.+.+..+..+...   + ++|++|++++|.+++.....+    .. .++|++|++++|.+.+.....   .+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            888888887775555444432   2 678888888887765444332    23 357888888888776433222   22


Q ss_pred             ccCC-cceEEEccCCccccccccccc----cc-CCcCeEeCCCCcCCcccc----hhhhhccccceEEEcCCCccccccc
Q 043452          271 TGCF-SLWLLDLSHNSFCGQVSPKFM----NL-TQLGWLSLDNNNFSGRIS----NGFLSSARSLQVLDISNNKLVGQIP  340 (384)
Q Consensus       271 ~~~~-~L~~L~l~~~~~~~~~~~~~~----~~-~~L~~l~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~  340 (384)
                      ...+ +|++|++++|.+.+..+..+.    .+ ++|++|++++|.+++...    ..+...+++|++|++++|.+.+..+
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            3343 788888888877765554333    34 478888888887764322    2222223578888888887775544


Q ss_pred             ----hhhhccCCccEEEccCccccccc-------ccccccCCCCceEeCcCCCCC
Q 043452          341 ----SWIGNFSSLALLTVSKNLLEGNI-------PVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       341 ----~~~~~~~~L~~L~l~~~~~~~~~-------~~~~~~~~~L~~l~l~~~~~s  384 (384)
                          ..+..+++|+.|++++|++.++.       +..+..+++|+.||+++|++.
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence                33355677888888888744332       234566777888888888763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=9.5e-25  Score=190.06  Aligned_cols=201  Identities=23%  Similarity=0.229  Sum_probs=113.3

Q ss_pred             CccEEEccCCCCCC-ccccc--cccCCCCeEeccCCccCCCcHHHHhhhC-----CCccEEEcCCCCCcCcccccCcccc
Q 043452          129 QLKVLHLRNCNLNG-TLGFL--QKQHDLKSLDLSHNKLVGSFPAWLLQHN-----TKLEVLRLTNNSFTGSLQLSNSKLD  200 (384)
Q Consensus       129 ~L~~L~l~~~~~~~-~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~  200 (384)
                      +|++|+++++.+.+ .+..+  ..+++|+.|++++|.+++. |..+ ..+     ++|++|++++|.+....+..+..++
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            44444444444433 33322  4555666666666655533 3222 222     6666666666666655556666666


Q ss_pred             CCceEeeecCccCCCc--chhH-HHhccCCcEEEccCCcCCCc---cchhccCCCCCcEEEeeccccccccccchhccCC
Q 043452          201 FLHHLDISSNSFTGRL--PQNM-STILQKLVYLDMSKNKFEGS---ISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCF  274 (384)
Q Consensus       201 ~L~~L~l~~~~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  274 (384)
                      +|++|++++|.+.+..  +..+ +..+++|++|++++|.++..   ....+..+++|++|++++|.+.+..+...+..++
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  253 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS  253 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence            6666666666654221  1111 13356677777777766632   1123345567777777777766444334444566


Q ss_pred             cceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcccc
Q 043452          275 SLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVG  337 (384)
Q Consensus       275 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  337 (384)
                      +|++|++++|.++ ..|..+.  ++|++|++++|.+++. +.  +..+++|++|++++|.+++
T Consensus       254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~--~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS--PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC--TTTSCEEEEEECTTCTTTC
T ss_pred             CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh--HhhCCCCCEEeccCCCCCC
Confidence            7777777777766 3344433  6677777777777633 32  5556777777777776653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=3.1e-24  Score=192.69  Aligned_cols=240  Identities=21%  Similarity=0.243  Sum_probs=142.7

Q ss_pred             CCCCCCccEEEccCCCCCC-----ccccccccCCCCeEeccCCcc---CCCcHHHH------hhhCCCccEEEcCCCCCc
Q 043452          124 WLPTSQLKVLHLRNCNLNG-----TLGFLQKQHDLKSLDLSHNKL---VGSFPAWL------LQHNTKLEVLRLTNNSFT  189 (384)
Q Consensus       124 ~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~---~~~~~~~~------~~~~~~L~~L~l~~~~~~  189 (384)
                      +..+++|++|+++++.+..     ++..+..+++|+.|++++|.+   .+.+|..+      +..+++|++|++++|.+.
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            4455677777777776655     223455677777777777533   33334333      346677777777777766


Q ss_pred             C----cccccCccccCCceEeeecCccCCCcchhHHHh---c---------cCCcEEEccCCcCCCc-cc---hhccCCC
Q 043452          190 G----SLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTI---L---------QKLVYLDMSKNKFEGS-IS---SSISEMK  249 (384)
Q Consensus       190 ~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~---------~~L~~L~l~~~~~~~~-~~---~~~~~~~  249 (384)
                      .    ..+..+..+++|++|++++|.++...+..+...   +         ++|++|++++|.++.. .+   ..+..++
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  187 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  187 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence            5    234455666777777777777653333333322   2         6777777777776532 22   2445566


Q ss_pred             CCcEEEeecccccccc----ccchhccCCcceEEEccCCccc----ccccccccccCCcCeEeCCCCcCCcccch---hh
Q 043452          250 DLRFLDLSRNQFSGEL----SAPLLTGCFSLWLLDLSHNSFC----GQVSPKFMNLTQLGWLSLDNNNFSGRISN---GF  318 (384)
Q Consensus       250 ~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~l~l~~~~~~~~~~~---~~  318 (384)
                      +|++|++++|.+....    ....+..+++|++|++++|.++    ...+..+..+++|++|++++|.+++....   ..
T Consensus       188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  267 (386)
T 2ca6_A          188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA  267 (386)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence            7777777777665221    1114455677777777777664    33445566667777777777776633221   11


Q ss_pred             hh--ccccceEEEcCCCcccc----ccchhh-hccCCccEEEccCccccccc
Q 043452          319 LS--SARSLQVLDISNNKLVG----QIPSWI-GNFSSLALLTVSKNLLEGNI  363 (384)
Q Consensus       319 ~~--~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~~~  363 (384)
                      +.  .+++|+.|++++|.+.+    .+|..+ .++++|+.|++++|++++..
T Consensus       268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            21  15667777777777665    355555 45677777777777776544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=8.4e-23  Score=174.72  Aligned_cols=205  Identities=20%  Similarity=0.154  Sum_probs=118.1

Q ss_pred             CCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEE
Q 043452          176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLD  255 (384)
Q Consensus       176 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  255 (384)
                      +++++|+++++.++......+..+++|++|++++|.+. ..+...+..+++|++|++++|.++...+..+..+++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            45666666666666555555666666666666666665 33333333456666666666666655555566666666666


Q ss_pred             eeccccccccccchhccCCcceEEEccCCccccc-ccccccccCCcCeEeCCCCcCCcccchhhhhccccce----EEEc
Q 043452          256 LSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ-VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQ----VLDI  330 (384)
Q Consensus       256 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~----~L~l  330 (384)
                      +++|.+. ......+.++++|++|++++|.+.+. .+..+..+++|++|++++|.++ .++...+..++.|+    .|++
T Consensus       107 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~l~l~L~l  184 (276)
T 2z62_A          107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL  184 (276)
T ss_dssp             CTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCTTCCEEEEC
T ss_pred             CCCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC-cCCHHHhhhhhhccccceeeec
Confidence            6666665 22222345566666666666666543 3555666666666666666665 23323333334444    6666


Q ss_pred             CCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452          331 SNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      ++|.+.+..+..+. ..+|+.|++++|++++..+..|..+++|+.|++++|+|+
T Consensus       185 s~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          185 SLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            66666643333333 335666666666666555555566666666666666653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=5.4e-23  Score=181.23  Aligned_cols=247  Identities=17%  Similarity=0.175  Sum_probs=143.9

Q ss_pred             CccEEEccCCCCCCcccccccc--CCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCc-ccccCccccCCceE
Q 043452          129 QLKVLHLRNCNLNGTLGFLQKQ--HDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGS-LQLSNSKLDFLHHL  205 (384)
Q Consensus       129 ~L~~L~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L  205 (384)
                      .++.++++++.+.  +..+..+  ++++.+++.++.+.+..+.  ...+++|++|++++|.+... .+..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            4667777666554  2334444  6677777777766544333  22567777777777766543 44455666777777


Q ss_pred             eeecCccCCCcchhHHHhccCCcEEEccCC-cCCCc-cchhccCCCCCcEEEeecc-ccccccccchhccCC-cceEEEc
Q 043452          206 DISSNSFTGRLPQNMSTILQKLVYLDMSKN-KFEGS-ISSSISEMKDLRFLDLSRN-QFSGELSAPLLTGCF-SLWLLDL  281 (384)
Q Consensus       206 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~-~L~~L~l  281 (384)
                      ++++|.+.+..+..+.. +++|++|++++| .+++. .+..+..+++|++|++++| .+++......+..++ +|++|++
T Consensus       124 ~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             ECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             eCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            77777666444444433 677777777777 45532 3444566677777777777 665333344455666 7777777


Q ss_pred             cCC--ccc-ccccccccccCCcCeEeCCCCc-CCcccchhhhhccccceEEEcCCC-ccccccchhhhccCCccEEEccC
Q 043452          282 SHN--SFC-GQVSPKFMNLTQLGWLSLDNNN-FSGRISNGFLSSARSLQVLDISNN-KLVGQIPSWIGNFSSLALLTVSK  356 (384)
Q Consensus       282 ~~~--~~~-~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~  356 (384)
                      ++|  .++ ...+..+..+++|+.|++++|. +++.... .+..+++|++|++++| .+.+.....+..+++|+.|++++
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  281 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  281 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence            777  343 2334455566777777777776 4433333 3445577777777777 34433344566677777777777


Q ss_pred             cccccccccccccCCCCceEeCcCCCCC
Q 043452          357 NLLEGNIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       357 ~~~~~~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      | +++.....+.  .+++.|++++|.++
T Consensus       282 ~-i~~~~~~~l~--~~l~~L~l~~n~l~  306 (336)
T 2ast_B          282 I-VPDGTLQLLK--EALPHLQINCSHFT  306 (336)
T ss_dssp             S-SCTTCHHHHH--HHSTTSEESCCCSC
T ss_pred             c-cCHHHHHHHH--hhCcceEEecccCc
Confidence            7 3332222221  12444446666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=6e-24  Score=190.84  Aligned_cols=240  Identities=19%  Similarity=0.232  Sum_probs=149.7

Q ss_pred             ccccccccCCCCeEeccCCccCCCcHHHH---hhhCCCccEEEcCCCCCc---Cccccc-------CccccCCceEeeec
Q 043452          143 TLGFLQKQHDLKSLDLSHNKLVGSFPAWL---LQHNTKLEVLRLTNNSFT---GSLQLS-------NSKLDFLHHLDISS  209 (384)
Q Consensus       143 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~---~~~~~~-------~~~~~~L~~L~l~~  209 (384)
                      +...+..+++|+.|++++|.+.+..+..+   +..+++|++|+++++.+.   ...+..       +..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            55566667777888887777764433332   335677778877775433   121222       25667778888877


Q ss_pred             CccCCC----cchhHHHhccCCcEEEccCCcCCCccchhc----cCC---------CCCcEEEeecccccccccc---ch
Q 043452          210 NSFTGR----LPQNMSTILQKLVYLDMSKNKFEGSISSSI----SEM---------KDLRFLDLSRNQFSGELSA---PL  269 (384)
Q Consensus       210 ~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~---------~~L~~L~l~~~~~~~~~~~---~~  269 (384)
                      |.+...    ++..+ ..+++|++|++++|.++...+..+    ..+         ++|++|++++|.+.+....   ..
T Consensus       104 n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             CCCCTTTHHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CcCCHHHHHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            777643    22233 336778888887777753322222    222         7778888887777532222   34


Q ss_pred             hccCCcceEEEccCCccccc-----ccccccccCCcCeEeCCCCcCCc----ccchhhhhccccceEEEcCCCccccc--
Q 043452          270 LTGCFSLWLLDLSHNSFCGQ-----VSPKFMNLTQLGWLSLDNNNFSG----RISNGFLSSARSLQVLDISNNKLVGQ--  338 (384)
Q Consensus       270 ~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~--  338 (384)
                      +..+++|++|++++|.+.+.     .+..+..+++|++|++++|.+++    .++ ..+..+++|+.|++++|.+.+.  
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IALKSWPNLRELGLNDCLLSARGA  261 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-HHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH-HHHccCCCcCEEECCCCCCchhhH
Confidence            45677788888877777632     22256667778888887777752    222 2345567778888887777654  


Q ss_pred             --cchhhhc--cCCccEEEccCccccc----cccccc-ccCCCCceEeCcCCCCC
Q 043452          339 --IPSWIGN--FSSLALLTVSKNLLEG----NIPVQL-KNLEALEILDVSENNLS  384 (384)
Q Consensus       339 --~~~~~~~--~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~l~l~~~~~s  384 (384)
                        ++.++..  +++|+.|++++|++++    ..+..+ .++++|+.|++++|+|+
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence              3445533  7778888888887775    355555 55778888888877764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=1.5e-22  Score=172.44  Aligned_cols=202  Identities=26%  Similarity=0.320  Sum_probs=169.3

Q ss_pred             CccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeee
Q 043452          129 QLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDIS  208 (384)
Q Consensus       129 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  208 (384)
                      +.+.++++++.+..++..+.  ++++.|+++++.+. .++...+..+++|++|++++|.++......+..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            57789999888888776543  68999999999887 5555556788999999999999887777777889999999999


Q ss_pred             cCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccc
Q 043452          209 SNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCG  288 (384)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  288 (384)
                      +|.+. ..+...+..+++|++|++++|.++...+..+..+++|++|++++|.+. ..+...+..+++|++|++++|.+..
T Consensus        94 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           94 DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             SSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcE
Confidence            99988 566665566889999999999998877777888999999999999987 5556667789999999999999988


Q ss_pred             cccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccc
Q 043452          289 QVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV  336 (384)
Q Consensus       289 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  336 (384)
                      ..+..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+.
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          172 VPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             eChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCee
Confidence            77777888999999999999988 566666777899999999998764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=2.2e-23  Score=183.69  Aligned_cols=238  Identities=18%  Similarity=0.173  Sum_probs=180.5

Q ss_pred             CCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEee
Q 043452          128 SQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDI  207 (384)
Q Consensus       128 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  207 (384)
                      ++++.++++++.+.+....+..+++|++|++++|.+++......+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            57888888888877755556678999999999998765434455678899999999999887666777778999999999


Q ss_pred             ecC-ccCCCcchhHHHhccCCcEEEccCC-cCCCc-cchhccCCC-CCcEEEeecc--ccccccccchhccCCcceEEEc
Q 043452          208 SSN-SFTGRLPQNMSTILQKLVYLDMSKN-KFEGS-ISSSISEMK-DLRFLDLSRN--QFSGELSAPLLTGCFSLWLLDL  281 (384)
Q Consensus       208 ~~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l  281 (384)
                      ++| .+++.........+++|++|++++| .+++. .+..+..++ +|++|++++|  .+++......+.++++|++|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            998 5664445555666899999999999 88754 456677888 9999999999  4543333445667999999999


Q ss_pred             cCCc-ccccccccccccCCcCeEeCCCCc-CCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccc
Q 043452          282 SHNS-FCGQVSPKFMNLTQLGWLSLDNNN-FSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLL  359 (384)
Q Consensus       282 ~~~~-~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  359 (384)
                      ++|. +++..+..+..+++|++|++++|. +++.. ...+..+++|++|++++| +.+.....+.  ++++.|++++|++
T Consensus       230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l  305 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET-LLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHF  305 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCS
T ss_pred             CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH-HHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccC
Confidence            9998 777777788889999999999985 33221 123566899999999999 5544334333  2356666899999


Q ss_pred             cccccccccc
Q 043452          360 EGNIPVQLKN  369 (384)
Q Consensus       360 ~~~~~~~~~~  369 (384)
                      ++..|..+..
T Consensus       306 ~~~~~~~~~~  315 (336)
T 2ast_B          306 TTIARPTIGN  315 (336)
T ss_dssp             CCTTCSSCSS
T ss_pred             ccccCCcccc
Confidence            9887776654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=6.9e-22  Score=169.73  Aligned_cols=203  Identities=23%  Similarity=0.243  Sum_probs=115.0

Q ss_pred             ccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccC
Q 043452          147 LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK  226 (384)
Q Consensus       147 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  226 (384)
                      +..+++++.+++.++.++ .+|..+   .++++.|++++|.+....+..+..+++|++|++++|.+. ..+..  ..+++
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~   78 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPV   78 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTT
T ss_pred             ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCc
Confidence            456677777777777665 555432   256777777777776655566666677777777776665 23222  23556


Q ss_pred             CcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCC
Q 043452          227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLD  306 (384)
Q Consensus       227 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  306 (384)
                      |++|++++|.++ ..+..+..+++|+.|++++|.++ ..+...+.++++|++|++++|.+....+..+..+++|+.|+++
T Consensus        79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  156 (290)
T 1p9a_G           79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (290)
T ss_dssp             CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence            666666666665 33344455556666666666555 3333444455555555555555555444445555555555555


Q ss_pred             CCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccc
Q 043452          307 NNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE  360 (384)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  360 (384)
                      +|.++ .++..++..+++|+.|++++|.+. .+|..+..+.+|+.|++++|++.
T Consensus       157 ~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          157 NNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TSCCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCcCC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            55555 444444444555555555555555 44444444555555555555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=2.1e-22  Score=175.07  Aligned_cols=229  Identities=18%  Similarity=0.153  Sum_probs=175.8

Q ss_pred             CCCCeEeccCCccCCCcHHHH--hhhCCCccEEEcCCCCCcCcccccC--ccccCCceEeeecCccCCCcch---hHHHh
Q 043452          151 HDLKSLDLSHNKLVGSFPAWL--LQHNTKLEVLRLTNNSFTGSLQLSN--SKLDFLHHLDISSNSFTGRLPQ---NMSTI  223 (384)
Q Consensus       151 ~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~---~~~~~  223 (384)
                      ..++.+.+.++.+++.....+  ....++|++|++++|.+.+..+..+  ..+++|++|++++|.+.+..+.   .....
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            356778887776643222221  1245779999999999987777777  8899999999999999854331   11124


Q ss_pred             ccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccc---cchhccCCcceEEEccCCcccccccc---ccccc
Q 043452          224 LQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELS---APLLTGCFSLWLLDLSHNSFCGQVSP---KFMNL  297 (384)
Q Consensus       224 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~  297 (384)
                      +++|++|++++|.+....+..+..+++|++|++++|.+.+...   ...+..+++|++|++++|.++.....   .+..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            7899999999999988888888999999999999999764321   23346789999999999999743221   34678


Q ss_pred             CCcCeEeCCCCcCCcccchhhhhc--cccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCce
Q 043452          298 TQLGWLSLDNNNFSGRISNGFLSS--ARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEI  375 (384)
Q Consensus       298 ~~L~~l~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  375 (384)
                      ++|++|++++|.+++..+..+...  +++|++|++++|.++ .+|..+.  ++|+.|++++|++++. |. +..+++|+.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~  298 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN  298 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence            999999999999986544433222  379999999999999 6676653  8999999999999854 33 678999999


Q ss_pred             EeCcCCCCC
Q 043452          376 LDVSENNLS  384 (384)
Q Consensus       376 l~l~~~~~s  384 (384)
                      |++++|+|+
T Consensus       299 L~L~~N~l~  307 (310)
T 4glp_A          299 LTLDGNPFL  307 (310)
T ss_dssp             EECSSTTTS
T ss_pred             EECcCCCCC
Confidence            999999986

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.8e-22  Score=179.47  Aligned_cols=262  Identities=17%  Similarity=0.126  Sum_probs=149.3

Q ss_pred             EecCCCccccCCchhhhcCCCCCEEEeecCcccCccC----ccccCCC-CccEEECCCCccccccccccCCCCCchhhhh
Q 043452           35 LNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLP----SVIASLT-SLQYLDLSDNYFQGIFYLSSLGNHSNLEFFM  109 (384)
Q Consensus        35 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~  109 (384)
                      ..++++.+.+..+..+...++|++|++++|.+.+..+    ..+.+++ +|++|++++|.+++..+.             
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-------------   69 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD-------------   69 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-------------
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-------------
Confidence            4555555554444444444446666666666654444    4455555 566666665554432100             


Q ss_pred             hhcccCceeeccCCCCCCCCccEEEccCCCCCCcccccccc-CCCCeEeccCCccCCCcHHHHhh---hC-CCccEEEcC
Q 043452          110 LSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQ-HDLKSLDLSHNKLVGSFPAWLLQ---HN-TKLEVLRLT  184 (384)
Q Consensus       110 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~---~~-~~L~~L~l~  184 (384)
                                                      .+...+... ++|++|++++|.+++..+..+..   .. ++|++|+++
T Consensus        70 --------------------------------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls  117 (362)
T 3goz_A           70 --------------------------------ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG  117 (362)
T ss_dssp             --------------------------------HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred             --------------------------------HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECc
Confidence                                            011222222 78889999888887555544332   33 788888888


Q ss_pred             CCCCcCcccccCc----c-ccCCceEeeecCccCCCcchhHHHh---c-cCCcEEEccCCcCCCccch----hccCC-CC
Q 043452          185 NNSFTGSLQLSNS----K-LDFLHHLDISSNSFTGRLPQNMSTI---L-QKLVYLDMSKNKFEGSISS----SISEM-KD  250 (384)
Q Consensus       185 ~~~~~~~~~~~~~----~-~~~L~~L~l~~~~~~~~~~~~~~~~---~-~~L~~L~l~~~~~~~~~~~----~~~~~-~~  250 (384)
                      +|.+.......+.    . .++|++|++++|.+.+.....+...   . ++|++|++++|.+++..+.    .+..+ ++
T Consensus       118 ~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~  197 (362)
T 3goz_A          118 WNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS  197 (362)
T ss_dssp             SSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred             CCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCC
Confidence            8887755443332    2 3578888888888775554444332   2 3788888888877654432    33344 47


Q ss_pred             CcEEEeecccccccccc----chhccCCcceEEEccCCccccccc----ccccccCCcCeEeCCCCcCCcccch------
Q 043452          251 LRFLDLSRNQFSGELSA----PLLTGCFSLWLLDLSHNSFCGQVS----PKFMNLTQLGWLSLDNNNFSGRISN------  316 (384)
Q Consensus       251 L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~------  316 (384)
                      |++|++++|.+.+....    .+....++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+....      
T Consensus       198 L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~  277 (362)
T 3goz_A          198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG  277 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH
T ss_pred             CCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH
Confidence            88888888777642221    122224577777777777765443    2234556777777777764322111      


Q ss_pred             hhhhccccceEEEcCCCccccccch
Q 043452          317 GFLSSARSLQVLDISNNKLVGQIPS  341 (384)
Q Consensus       317 ~~~~~~~~L~~L~l~~~~~~~~~~~  341 (384)
                      ..+..+++|+.|++++|.+.+..+.
T Consensus       278 ~~~~~l~~L~~LdL~~N~l~~~~~~  302 (362)
T 3goz_A          278 AAFPNIQKIILVDKNGKEIHPSHSI  302 (362)
T ss_dssp             TTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred             HHhccCCceEEEecCCCcCCCcchH
Confidence            1223345666777777766654333

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=4.4e-22  Score=169.67  Aligned_cols=179  Identities=25%  Similarity=0.300  Sum_probs=85.0

Q ss_pred             CCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceE
Q 043452          126 PTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHL  205 (384)
Q Consensus       126 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  205 (384)
                      .+++|+.|+++++.+..++ .+..+++|++|++++|.+.+ ++  .+..+++|++|++++|.++......+..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            4455666666665554432 24455566666666655542 22  23455555555555555554444444555555555


Q ss_pred             eeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCc
Q 043452          206 DISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNS  285 (384)
Q Consensus       206 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  285 (384)
                      ++++|.+. ..+...+..+++|++|++++|.+++..+..+..+++|++|++++|.+. ..+...+.++++|++|++++|.
T Consensus       115 ~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          115 VLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             ECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCc
Confidence            55555544 333322223445555555555444433333444445555555554444 2222333344444444444444


Q ss_pred             ccccccccccccCCcCeEeCCCCcC
Q 043452          286 FCGQVSPKFMNLTQLGWLSLDNNNF  310 (384)
Q Consensus       286 ~~~~~~~~~~~~~~L~~l~l~~~~~  310 (384)
                      +.+..+..+..+++|+.|++++|.+
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          193 LKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCccCHHHHhCCcCCCEEEccCCCc
Confidence            4444333344444444444444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.6e-21  Score=164.27  Aligned_cols=156  Identities=22%  Similarity=0.294  Sum_probs=82.5

Q ss_pred             CCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeC
Q 043452          226 KLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSL  305 (384)
Q Consensus       226 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l  305 (384)
                      .++.|++++|.+.+..+..+..+++|++|++++|.+. ......+.++++|++|++++|.+....+..+..+++|++|++
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            4555555555555444444555555555555555554 223333444555555555555555444444555555555555


Q ss_pred             CCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452          306 DNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL  383 (384)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  383 (384)
                      ++|.++ .++...+..+++|++|++++|.+.+..+.++..+++|+.|++++|++.+..+..|..+++|+.|++++|+|
T Consensus       115 ~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          115 GGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             CCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence            555555 33334444455555555555555544444555555555555555555554444555555555555555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=6.9e-22  Score=165.25  Aligned_cols=198  Identities=19%  Similarity=0.218  Sum_probs=156.9

Q ss_pred             CCccEEEcCCCCCcCcccccCccccCCceEeeecCc-cCCCcchhHHHhccCCcEEEccC-CcCCCccchhccCCCCCcE
Q 043452          176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS-FTGRLPQNMSTILQKLVYLDMSK-NKFEGSISSSISEMKDLRF  253 (384)
Q Consensus       176 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~  253 (384)
                      +++++|+++++.++......+..+++|++|++++|. +. .++...+..+++|++|++++ |.++...+..+..+++|++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            467777777777776666667778888888888886 65 55544445577888888887 7887666677888899999


Q ss_pred             EEeeccccccccccchhccCCcce---EEEccCC-cccccccccccccCCcC-eEeCCCCcCCcccchhhhhccccceEE
Q 043452          254 LDLSRNQFSGELSAPLLTGCFSLW---LLDLSHN-SFCGQVSPKFMNLTQLG-WLSLDNNNFSGRISNGFLSSARSLQVL  328 (384)
Q Consensus       254 L~l~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~~L~~L  328 (384)
                      |++++|.+.+ .+.  +..+++|+   +|++++| .+....+..+..+++|+ .+++++|.++ .++...+.. ++|++|
T Consensus       110 L~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L  184 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAV  184 (239)
T ss_dssp             EEEEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEE
T ss_pred             EeCCCCCCcc-ccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEE
Confidence            9999998874 333  56677777   9999999 88877777788999999 9999999998 677666666 899999


Q ss_pred             EcCCCc-cccccchhhhcc-CCccEEEccCcccccccccccccCCCCceEeCcCCC
Q 043452          329 DISNNK-LVGQIPSWIGNF-SSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENN  382 (384)
Q Consensus       329 ~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  382 (384)
                      ++++|. +.+..+.+|.++ ++|+.|++++|++++..+ .  .+++|+.|+++++.
T Consensus       185 ~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~-~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS-K--GLEHLKELIARNTW  237 (239)
T ss_dssp             ECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC-T--TCTTCSEEECTTC-
T ss_pred             EcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh-h--HhccCceeeccCcc
Confidence            999994 886667889999 999999999999985443 3  68899999999873

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=1.1e-21  Score=168.45  Aligned_cols=203  Identities=26%  Similarity=0.249  Sum_probs=170.5

Q ss_pred             CCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCc
Q 043452          124 WLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLH  203 (384)
Q Consensus       124 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  203 (384)
                      +..++++++++++++.+..++..+.  ++++.|++++|.++ .++...+..+++|++|++++|.++.....  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            4567889999999999888776553  68999999999987 55555567899999999999998865443  6889999


Q ss_pred             eEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccC
Q 043452          204 HLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSH  283 (384)
Q Consensus       204 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  283 (384)
                      +|++++|.+. .++..+ ..+++|++|++++|+++...+..+..+++|++|++++|.+. ..+...+..+++|+.|++++
T Consensus        81 ~L~Ls~N~l~-~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             EEECCSSCCS-SCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTT
T ss_pred             EEECCCCcCC-cCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCC
Confidence            9999999997 666544 44889999999999999777788899999999999999998 56666778899999999999


Q ss_pred             CcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccc
Q 043452          284 NSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV  336 (384)
Q Consensus       284 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  336 (384)
                      |.+....+..+..+++|+.|++++|.++ .++..++. .+.|+.+++++|.+.
T Consensus       158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~-~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG-SHLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT-TCCCSEEECCSCCBC
T ss_pred             CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc-cccCCeEEeCCCCcc
Confidence            9999877777888999999999999998 66666554 479999999998764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=2.5e-21  Score=167.85  Aligned_cols=195  Identities=22%  Similarity=0.295  Sum_probs=159.5

Q ss_pred             ccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccC
Q 043452          147 LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK  226 (384)
Q Consensus       147 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  226 (384)
                      ...+++|+.|+++++.+. .++.  +..+++|++|++++|.+.....  +..+++|++|++++|.+. ..+ .+ ..+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~-~~l~~  108 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AI-AGLQS  108 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GG-TTCTT
T ss_pred             HHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hh-cCCCC
Confidence            456789999999999886 4553  5688999999999998886555  788999999999999987 343 33 34889


Q ss_pred             CcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCC
Q 043452          227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLD  306 (384)
Q Consensus       227 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  306 (384)
                      |++|++++|.+++..  .+..+++|++|++++|.+.+...   +..+++|++|++++|.+.+..+  +..+++|+.|+++
T Consensus       109 L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~  181 (308)
T 1h6u_A          109 IKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD  181 (308)
T ss_dssp             CCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECC
Confidence            999999999998643  37889999999999999874322   6778999999999999886544  7788999999999


Q ss_pred             CCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452          307 NNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG  361 (384)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  361 (384)
                      +|.+++ ++.  +..+++|+.|++++|.+.+..  .+..+++|+.|++++|++++
T Consensus       182 ~n~l~~-~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          182 DNKISD-ISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             SSCCCC-CGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             CCccCc-Chh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            999873 333  667799999999999998554  37899999999999999875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=2.8e-21  Score=164.69  Aligned_cols=215  Identities=18%  Similarity=0.239  Sum_probs=159.9

Q ss_pred             CCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEE
Q 043452          152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLD  231 (384)
Q Consensus       152 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  231 (384)
                      ++..+.+.++.+.+...   ...+++|+.|+++++.+...  ..+..+++|++|++++|.+.+ .+ .+ ..+++|++|+
T Consensus        20 ~l~~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~-~l-~~l~~L~~L~   91 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-IS-AL-KELTNLTYLI   91 (272)
T ss_dssp             HHHHHHHTCSCTTSEEC---HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CG-GG-TTCTTCCEEE
T ss_pred             HHHHHHhcCcccccccc---cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-ch-hh-cCCCCCCEEE
Confidence            34455555555543333   23568899999998877643  246778889999999888873 32 33 3478888999


Q ss_pred             ccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCC
Q 043452          232 MSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFS  311 (384)
Q Consensus       232 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  311 (384)
                      +++|.+++..+..+..+++|++|++++|.+. ..+...+.++++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus        92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  170 (272)
T 3rfs_A           92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ  170 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence            9888888777677788888899999888887 455555677888888888888888777767778888888888888887


Q ss_pred             cccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452          312 GRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL  383 (384)
Q Consensus       312 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  383 (384)
                       .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+       .|++|+.+++++|.+
T Consensus       171 -~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          171 -SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKH  234 (272)
T ss_dssp             -CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHT
T ss_pred             -ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhC
Confidence             5555556677888888888888887777777888888888888888763       366677776666544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=5.6e-20  Score=159.41  Aligned_cols=194  Identities=19%  Similarity=0.292  Sum_probs=141.2

Q ss_pred             hhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCch
Q 043452           26 ICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNL  105 (384)
Q Consensus        26 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  105 (384)
                      ..++++|++|+++++.+.. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..           
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-----------  101 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-----------  101 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-----------
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-----------
Confidence            5567888888888888773 44 57788888888888888874443  788888888888888765431           


Q ss_pred             hhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCC
Q 043452          106 EFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTN  185 (384)
Q Consensus       106 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  185 (384)
                                       .+..+++|++|+++++.+.+++. +..+++|+.|++++|.+++ ++.  +..+++|++|++++
T Consensus       102 -----------------~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~  160 (308)
T 1h6u_A          102 -----------------AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITN-ISP--LAGLTNLQYLSIGN  160 (308)
T ss_dssp             -----------------GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCS
T ss_pred             -----------------hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCc-Ccc--ccCCCCccEEEccC
Confidence                             24456778888888887776554 7778888888888887763 333  56778888888888


Q ss_pred             CCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccc
Q 043452          186 NSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFS  262 (384)
Q Consensus       186 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  262 (384)
                      |.+.....  +..+++|++|++++|.+. ..+.  ...+++|++|++++|.+++..  .+..+++|+.|++++|.+.
T Consensus       161 n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          161 AQVSDLTP--LANLSKLTTLKADDNKIS-DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             CcCCCChh--hcCCCCCCEEECCCCccC-cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            87775443  667778888888888776 3332  344778888888888777543  3667788888888888775

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=1.2e-20  Score=163.94  Aligned_cols=225  Identities=18%  Similarity=0.215  Sum_probs=120.2

Q ss_pred             ccccEEecCCCccccCCch---hhhcCCCCCEEEeecCcccCccCccc--cCCCCccEEECCCCccccccc---cccCCC
Q 043452           30 KNLIELNLEGNAIEGPLPQ---CLKNLTRLKVFGISSNQLSGSLPSVI--ASLTSLQYLDLSDNYFQGIFY---LSSLGN  101 (384)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~---~~~~~~  101 (384)
                      ..++.+.+.++.+......   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+   ...+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            3467777777665431111   11234668888888877776676666  777788888888777765322   112224


Q ss_pred             CCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC---c--cccccccCCCCeEeccCCccCCCcHH---HHhh
Q 043452          102 HSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG---T--LGFLQKQHDLKSLDLSHNKLVGSFPA---WLLQ  173 (384)
Q Consensus       102 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~--~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~  173 (384)
                      +++|++|+++.+.. .......+..+++|++|++++|.+.+   +  ...+..+++|++|++++|.++ .++.   .+++
T Consensus       144 ~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~  221 (310)
T 4glp_A          144 KPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA  221 (310)
T ss_dssp             CSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence            44555555444333 12223345556666666666666543   1  122345566666666666664 2222   2344


Q ss_pred             hCCCccEEEcCCCCCcCcccccCccc---cCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCC
Q 043452          174 HNTKLEVLRLTNNSFTGSLQLSNSKL---DFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKD  250 (384)
Q Consensus       174 ~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  250 (384)
                      .+++|++|++++|.+....+..+..+   ++|++|++++|.+. .++..+   +++|++|++++|++++. + .+..+++
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~---~~~L~~L~Ls~N~l~~~-~-~~~~l~~  295 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL---PAKLRVLDLSSNRLNRA-P-QPDELPE  295 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC---CSCCSCEECCSCCCCSC-C-CTTSCCC
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh---cCCCCEEECCCCcCCCC-c-hhhhCCC
Confidence            55666666666666665443333333   45666666666555 444433   24555555555555532 1 1334455


Q ss_pred             CcEEEeeccccc
Q 043452          251 LRFLDLSRNQFS  262 (384)
Q Consensus       251 L~~L~l~~~~~~  262 (384)
                      |+.|++++|.++
T Consensus       296 L~~L~L~~N~l~  307 (310)
T 4glp_A          296 VDNLTLDGNPFL  307 (310)
T ss_dssp             CSCEECSSTTTS
T ss_pred             ccEEECcCCCCC
Confidence            555555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=2.2e-20  Score=156.12  Aligned_cols=179  Identities=13%  Similarity=0.152  Sum_probs=152.2

Q ss_pred             cCCceEeeecCccCCCcchhHHHhccCCcEEEccCCc-CCCccchhccCCCCCcEEEeec-cccccccccchhccCCcce
Q 043452          200 DFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNK-FEGSISSSISEMKDLRFLDLSR-NQFSGELSAPLLTGCFSLW  277 (384)
Q Consensus       200 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~  277 (384)
                      ++|++|+++++.+. .++...+..+++|++|++++|. ++...+..+..+++|++|++++ |.+. ..+...|.++++|+
T Consensus        31 ~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           31 PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLK  108 (239)
T ss_dssp             TTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCC
T ss_pred             CcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCC
Confidence            48999999999998 6666555569999999999997 8866667889999999999999 8887 55666778899999


Q ss_pred             EEEccCCcccccccccccccCCcC---eEeCCCC-cCCcccchhhhhccccce-EEEcCCCccccccchhhhccCCccEE
Q 043452          278 LLDLSHNSFCGQVSPKFMNLTQLG---WLSLDNN-NFSGRISNGFLSSARSLQ-VLDISNNKLVGQIPSWIGNFSSLALL  352 (384)
Q Consensus       278 ~L~l~~~~~~~~~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L  352 (384)
                      +|++++|.+.+ .+. +..+++|+   +|++++| .++ .++...+..+++|+ .|++++|.+....+.++.. ++|+.|
T Consensus       109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L  184 (239)
T 2xwt_C          109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAV  184 (239)
T ss_dssp             EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEE
T ss_pred             EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEE
Confidence            99999999886 343 77888888   9999999 887 66666788889999 9999999998444455655 899999


Q ss_pred             EccCcc-cccccccccccC-CCCceEeCcCCCCC
Q 043452          353 TVSKNL-LEGNIPVQLKNL-EALEILDVSENNLS  384 (384)
Q Consensus       353 ~l~~~~-~~~~~~~~~~~~-~~L~~l~l~~~~~s  384 (384)
                      ++++|+ +++..+..|..+ ++|+.|++++|+++
T Consensus       185 ~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             ECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             EcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            999996 887777889999 99999999999885

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.82  E-value=2.3e-19  Score=150.97  Aligned_cols=181  Identities=22%  Similarity=0.242  Sum_probs=136.7

Q ss_pred             CCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEE
Q 043452          151 HDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYL  230 (384)
Q Consensus       151 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  230 (384)
                      ...+.++++++.++ .+|..+   .++++.|+++++.+....+..+..+++|++|++++|.+. ..+...+..+++|++|
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L   88 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTL   88 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEE
Confidence            45678888888776 666433   367888888888888777777888888888888888887 4444444457888888


Q ss_pred             EccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcC
Q 043452          231 DMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNF  310 (384)
Q Consensus       231 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  310 (384)
                      ++++|.++...+..+..+++|++|++++|.+. ..+...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus        89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  167 (251)
T 3m19_A           89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL  167 (251)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence            88888888766677778888888888888877 45555566788888888888888776666777788888888888888


Q ss_pred             CcccchhhhhccccceEEEcCCCccccc
Q 043452          311 SGRISNGFLSSARSLQVLDISNNKLVGQ  338 (384)
Q Consensus       311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~  338 (384)
                      + .++...+..+++|+.|++++|.+...
T Consensus       168 ~-~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          168 Q-SVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             S-CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             C-ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            7 45555566678888888888877643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.80  E-value=3e-18  Score=153.96  Aligned_cols=333  Identities=14%  Similarity=0.121  Sum_probs=232.6

Q ss_pred             ccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccC
Q 043452           20 SLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSL   99 (384)
Q Consensus        20 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~   99 (384)
                      +++..+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.++++++ ++.....+|.+|+.|+.+.+..+ +... ....+
T Consensus        61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i-~~~aF  136 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSI-GVEAF  136 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE-CTTTT
T ss_pred             EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeee-cceee
Confidence            688888999999999999754 55566788999999999999865 55466778899999998887654 2211 11334


Q ss_pred             CCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCcc
Q 043452          100 GNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLE  179 (384)
Q Consensus       100 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  179 (384)
                      ..+..+....   ..........+|..+++|+.+.+......-....+..+.+|+.+.+..+ +. .+....+..++.|+
T Consensus       137 ~~~~~~~~~~---~~~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~  211 (394)
T 4fs7_A          137 KGCDFKEITI---PEGVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLE  211 (394)
T ss_dssp             TTCCCSEEEC---CTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCC
T ss_pred             eccccccccc---CccccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccc
Confidence            4443222211   2223344556788889999998865432224456778888999888765 22 45555677888888


Q ss_pred             EEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeecc
Q 043452          180 VLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRN  259 (384)
Q Consensus       180 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  259 (384)
                      .+.+..+...  .........+|+.+.+.... . .+....+..++.++.+.+..+... .....+..++.++.+.....
T Consensus       212 ~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~  286 (394)
T 4fs7_A          212 NMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV  286 (394)
T ss_dssp             BCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS
T ss_pred             eeecCCCceE--eehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCce
Confidence            8877654322  12223345678888876542 2 344444556888999888765332 45566778888888877665


Q ss_pred             ccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcccccc
Q 043452          260 QFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQI  339 (384)
Q Consensus       260 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  339 (384)
                      .+    +...|..+.+|+.+.+.++ +......+|..|.+|+.+++... ++ .+...+|.+|.+|+.+.+..+ +..+.
T Consensus       287 ~i----~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~  358 (394)
T 4fs7_A          287 IV----PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIG  358 (394)
T ss_dssp             EE----CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred             ee----ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEeh
Confidence            43    3455777899999998765 55566778889999999999653 54 677778889999999999876 66567


Q ss_pred             chhhhccCCccEEEccCcccccccccccccCCCCceE
Q 043452          340 PSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEIL  376 (384)
Q Consensus       340 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  376 (384)
                      ..+|.+|++|+.+++..+ +. ....+|.+|++|+.+
T Consensus       359 ~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          359 ANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             HHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            789999999999999765 33 334678889988875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=7.7e-19  Score=155.20  Aligned_cols=237  Identities=21%  Similarity=0.210  Sum_probs=109.8

Q ss_pred             EEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcc-cccCccccCCceE-eeecC
Q 043452          133 LHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSL-QLSNSKLDFLHHL-DISSN  210 (384)
Q Consensus       133 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L-~l~~~  210 (384)
                      ++.++++++.+|..+  .+++++|++++|.++ .++...++.+++|++|++++|.+.+.. ..++..++++.++ .+..+
T Consensus        14 v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           14 FLCQESKVTEIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             EEEESTTCCSCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             EEecCCCCCccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            333444444444332  234555555555554 444444455555555555555543322 2334455554432 23334


Q ss_pred             ccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccC-CcceEEEccCCccccc
Q 043452          211 SFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGC-FSLWLLDLSHNSFCGQ  289 (384)
Q Consensus       211 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~  289 (384)
                      .+. .++...+..+++|++|++++|.+....+..+....++..+++.++......+...|..+ ..++.|++++|.+...
T Consensus        91 ~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           91 NLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             ccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence            444 33333333355555555555555544333333444555555544321113333333333 2455566666655543


Q ss_pred             ccccccccCCcCeEeCCCC-cCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccc
Q 043452          290 VSPKFMNLTQLGWLSLDNN-NFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLK  368 (384)
Q Consensus       290 ~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  368 (384)
                      .+..+ ...+|+++++.++ .++ .++..++..+++|+.|++++|.++. +|.  ..+.+|+.|.+.++...+..| .+.
T Consensus       170 ~~~~f-~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~l~~~~l~~lP-~l~  243 (350)
T 4ay9_X          170 HNSAF-NGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS-LPS--YGLENLKKLRARSTYNLKKLP-TLE  243 (350)
T ss_dssp             CTTSS-TTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCC-CCS--SSCTTCCEEECTTCTTCCCCC-CTT
T ss_pred             Chhhc-cccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCc-cCh--hhhccchHhhhccCCCcCcCC-Cch
Confidence            33333 2344555555543 333 4555555555666666666665552 222  123444455544443333344 245


Q ss_pred             cCCCCceEeCc
Q 043452          369 NLEALEILDVS  379 (384)
Q Consensus       369 ~~~~L~~l~l~  379 (384)
                      .+++|+.++++
T Consensus       244 ~l~~L~~l~l~  254 (350)
T 4ay9_X          244 KLVALMEASLT  254 (350)
T ss_dssp             TCCSCCEEECS
T ss_pred             hCcChhhCcCC
Confidence            55566666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=1.1e-18  Score=143.41  Aligned_cols=133  Identities=18%  Similarity=0.221  Sum_probs=73.1

Q ss_pred             CCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEE
Q 043452          250 DLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLD  329 (384)
Q Consensus       250 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~  329 (384)
                      .++.|++++|.+.+..+...+.++++|++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|++|+
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCGGGGTTCSSCCEEE
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC-ccCHhHhcCCcCCCEEE
Confidence            34555555555543223333445555555555555555544445555555666666665555 33334445555666666


Q ss_pred             cCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452          330 ISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL  383 (384)
Q Consensus       330 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  383 (384)
                      +++|.+.+..+.+|.++++|+.|++++|++++..|..|..+++|+.|++++|+|
T Consensus       112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            666655555555555566666666666666555555555566666666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=1.9e-18  Score=148.48  Aligned_cols=190  Identities=21%  Similarity=0.214  Sum_probs=146.2

Q ss_pred             CeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEcc
Q 043452          154 KSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMS  233 (384)
Q Consensus       154 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  233 (384)
                      ..+.+....+.+...   .+.+++|++|+++++.+...  ..+..+++|++|++++|.+.+ .+.  ...+++|++|+++
T Consensus        27 ~~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~   98 (291)
T 1h6t_A           27 IKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLD   98 (291)
T ss_dssp             HHHHTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECC
T ss_pred             HHHHhcCCCcccccc---hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECC
Confidence            334455555543222   23568899999999988755  247788999999999999874 443  4458899999999


Q ss_pred             CCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcc
Q 043452          234 KNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGR  313 (384)
Q Consensus       234 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  313 (384)
                      +|.+++.  ..+..+++|++|++++|.+.+.   ..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+++.
T Consensus        99 ~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~---~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~  171 (291)
T 1h6t_A           99 ENKVKDL--SSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  171 (291)
T ss_dssp             SSCCCCG--GGGTTCTTCCEEECTTSCCCCC---GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred             CCcCCCC--hhhccCCCCCEEECCCCcCCCC---hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence            9998853  3478889999999999988742   3466789999999999988765  5677889999999999998743


Q ss_pred             cchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccccc
Q 043452          314 ISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNI  363 (384)
Q Consensus       314 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  363 (384)
                       .+  +..+++|+.|++++|.+++. + ++..+++|+.|++++|++....
T Consensus       172 -~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          172 -VP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             -GG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred             -hh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCCc
Confidence             33  66778999999999988853 3 4888999999999999987543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=1.2e-18  Score=143.18  Aligned_cols=133  Identities=20%  Similarity=0.273  Sum_probs=79.0

Q ss_pred             CCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEE
Q 043452          249 KDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVL  328 (384)
Q Consensus       249 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L  328 (384)
                      ++++.|++++|.+. ..+...+.++++|++|++++|.+....+..|..+++|++|++++|.++ .++..++..+++|+.|
T Consensus        32 ~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L  109 (220)
T 2v9t_B           32 ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLL  109 (220)
T ss_dssp             TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEE
Confidence            45555555555554 333334445555666666666555555555666666666666666665 4454555555666666


Q ss_pred             EcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452          329 DISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL  383 (384)
Q Consensus       329 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  383 (384)
                      ++++|.+.+..+.+|.++++|+.|++++|++++..+..|..+++|+.|++++|+|
T Consensus       110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            6666666655556666666666666666666655555566666666666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=6.2e-19  Score=155.80  Aligned_cols=216  Identities=19%  Similarity=0.176  Sum_probs=167.5

Q ss_pred             CeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcE-EEc
Q 043452          154 KSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVY-LDM  232 (384)
Q Consensus       154 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~-L~l  232 (384)
                      +.++.+++.++ ++|..+   .+++++|++++|.++.....+|..+++|++|++++|.+.+.++...+..++++.+ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            67888888887 777644   3689999999999997777889999999999999999875676666666777765 566


Q ss_pred             cCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccC-CcccccccccccccC-CcCeEeCCCCcC
Q 043452          233 SKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSH-NSFCGQVSPKFMNLT-QLGWLSLDNNNF  310 (384)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~l~l~~~~~  310 (384)
                      .+++++...+..+..+++|++|++++|.+. ..+...+....++..+++.+ +.+....+..+..+. .++.|++++|.+
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            678888777888899999999999999987 44444455567788899876 556655555666654 688999999999


Q ss_pred             CcccchhhhhccccceEEEcCC-CccccccchhhhccCCccEEEccCcccccccccccccCCCCceE
Q 043452          311 SGRISNGFLSSARSLQVLDISN-NKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEIL  376 (384)
Q Consensus       311 ~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  376 (384)
                      + .++..++.. .+|+++++.+ |.+....+++|.++++|+.|++++|+++...+..+.++++|+.+
T Consensus       167 ~-~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l  231 (350)
T 4ay9_X          167 Q-EIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  231 (350)
T ss_dssp             C-EECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECT
T ss_pred             c-CCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhc
Confidence            8 666665554 7899999986 46665555688999999999999999996555455544444433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=4.4e-18  Score=137.53  Aligned_cols=151  Identities=14%  Similarity=0.220  Sum_probs=111.7

Q ss_pred             ccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeE
Q 043452          224 LQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWL  303 (384)
Q Consensus       224 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  303 (384)
                      +++|++|++++|.++.. + .+..+++|++|++++|.+..   ...+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus        43 l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHATN---YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCSC---CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCCc---chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            56777777777777633 2 56677888888888886542   1245567888888888888877677778888888888


Q ss_pred             eCCCCcCCcccchhhhhccccceEEEcCCCc-cccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCC
Q 043452          304 SLDNNNFSGRISNGFLSSARSLQVLDISNNK-LVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENN  382 (384)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  382 (384)
                      ++++|.+++..+ ..+..+++|++|++++|. +. .++ .+..+++|+.|++++|++++. + .+..+++|+.|++++|+
T Consensus       118 ~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          118 DISHSAHDDSIL-TKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             ECCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred             EecCCccCcHhH-HHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence            888888874333 445677889999999887 55 444 678888999999999988753 2 67888999999999988


Q ss_pred             CC
Q 043452          383 LS  384 (384)
Q Consensus       383 ~s  384 (384)
                      |.
T Consensus       193 i~  194 (197)
T 4ezg_A          193 IG  194 (197)
T ss_dssp             --
T ss_pred             cC
Confidence            74

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=1.3e-18  Score=142.01  Aligned_cols=181  Identities=22%  Similarity=0.233  Sum_probs=145.8

Q ss_pred             cEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeec
Q 043452          179 EVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSR  258 (384)
Q Consensus       179 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  258 (384)
                      +.++.+++.++....   ...++|++|+++++.+. ..+...+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus        10 ~~v~c~~~~l~~~p~---~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTSVPT---GIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSSCCS---CCCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccCCCC---CCCCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            566777766664432   22468999999999988 56655555688999999999999877666778899999999999


Q ss_pred             cccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccc
Q 043452          259 NQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQ  338 (384)
Q Consensus       259 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  338 (384)
                      |.+. ..+...+.++++|++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+.  
T Consensus        86 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~--  161 (208)
T 2o6s_A           86 NQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD--  161 (208)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC--
T ss_pred             CcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCee--
Confidence            9987 555566778899999999999998777777888999999999999988 555566777899999999999765  


Q ss_pred             cchhhhccCCccEEEccCcccccccccccccCCC
Q 043452          339 IPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEA  372 (384)
Q Consensus       339 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  372 (384)
                           +.+++|+.|+++.|++++.+|..+..++.
T Consensus       162 -----~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          162 -----CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             -----CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             -----cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence                 35678899999999999888888877764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=1.9e-18  Score=141.06  Aligned_cols=196  Identities=21%  Similarity=0.233  Sum_probs=158.3

Q ss_pred             CCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEc
Q 043452          153 LKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDM  232 (384)
Q Consensus       153 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  232 (384)
                      -+.+++.++.++ .+|..   ..+++++|+++++.+.......+..+++|++|++++|.+. .++...+..+++|++|++
T Consensus         9 ~~~v~c~~~~l~-~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L   83 (208)
T 2o6s_A            9 GTTVECYSQGRT-SVPTG---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNL   83 (208)
T ss_dssp             TTEEECCSSCCS-SCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCcc-CCCCC---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEEC
Confidence            467788877765 55532   3478999999999998777777889999999999999998 666665566899999999


Q ss_pred             cCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCc
Q 043452          233 SKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSG  312 (384)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  312 (384)
                      ++|.++...+..+..+++|++|++++|.+. ..+...+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus        84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A           84 STNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence            999999777777888999999999999987 5555667789999999999999988777778889999999999998752


Q ss_pred             ccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccc
Q 043452          313 RISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQ  366 (384)
Q Consensus       313 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  366 (384)
                              .++.|+.|++..|.+++.+|..++.++.    ++..|...+..+..
T Consensus       163 --------~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~~  204 (208)
T 2o6s_A          163 --------TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVRS  204 (208)
T ss_dssp             --------CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGGG
T ss_pred             --------CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCccee
Confidence                    3578899999999999999988887655    45555544333333

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=4.1e-18  Score=146.32  Aligned_cols=175  Identities=21%  Similarity=0.260  Sum_probs=144.6

Q ss_pred             ccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccC
Q 043452          147 LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK  226 (384)
Q Consensus       147 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  226 (384)
                      ...+++|+.|+++++.+. .++.  +..+++|++|++++|.+....+  +..+++|++|++++|.+. ..+.  ...+++
T Consensus        42 ~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~  113 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKK  113 (291)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTT
T ss_pred             hhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCC
Confidence            457889999999999886 4443  5688999999999999886555  788999999999999987 3433  344889


Q ss_pred             CcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCC
Q 043452          227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLD  306 (384)
Q Consensus       227 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  306 (384)
                      |++|++++|.+++.  ..+..+++|+.|++++|.+.+.   ..+..+++|++|++++|.+.+..+  +..+++|+.|+++
T Consensus       114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~  186 (291)
T 1h6t_A          114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS  186 (291)
T ss_dssp             CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECC
Confidence            99999999999864  4677889999999999998743   456779999999999999987655  7889999999999


Q ss_pred             CCcCCcccchhhhhccccceEEEcCCCcccccc
Q 043452          307 NNNFSGRISNGFLSSARSLQVLDISNNKLVGQI  339 (384)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  339 (384)
                      +|.+++ ++.  +..+++|+.|++++|.+....
T Consensus       187 ~N~i~~-l~~--l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          187 KNHISD-LRA--LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             SSCCCB-CGG--GTTCTTCSEEEEEEEEEECCC
T ss_pred             CCcCCC-Chh--hccCCCCCEEECcCCcccCCc
Confidence            999983 432  677899999999999887543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=1e-18  Score=155.00  Aligned_cols=156  Identities=26%  Similarity=0.248  Sum_probs=70.1

Q ss_pred             CCcEEEccCCcCCCccchhcc-CCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEe
Q 043452          226 KLVYLDMSKNKFEGSISSSIS-EMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLS  304 (384)
Q Consensus       226 ~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~  304 (384)
                      .++.|++++|.++...+..+. .+++|+.|++++|.+. ......|.++++|++|++++|.+....+..|..+++|++|+
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            344444444444433333333 4444555555554444 22223334444555555555544444444444445555555


Q ss_pred             CCCCcCCcccchhhhhccccceEEEcCCCccccccchhh---hccCCccEEEccCcccccccccccccCCC--CceEeCc
Q 043452          305 LDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWI---GNFSSLALLTVSKNLLEGNIPVQLKNLEA--LEILDVS  379 (384)
Q Consensus       305 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~l~l~  379 (384)
                      +++|.++ .+.+..+..+++|+.|++++|.++...+..+   ..+++|+.|+|++|++++..+..+..++.  ++.|+++
T Consensus       119 L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~  197 (361)
T 2xot_A          119 LYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH  197 (361)
T ss_dssp             CCSSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred             CCCCccc-EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence            5555544 2233334444455555555555443222233   33455555555555555444344444444  2445555


Q ss_pred             CCCC
Q 043452          380 ENNL  383 (384)
Q Consensus       380 ~~~~  383 (384)
                      +|+|
T Consensus       198 ~N~~  201 (361)
T 2xot_A          198 NNPL  201 (361)
T ss_dssp             SSCE
T ss_pred             CCCc
Confidence            5543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=1.7e-18  Score=151.71  Aligned_cols=223  Identities=12%  Similarity=0.044  Sum_probs=141.7

Q ss_pred             cCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccC---CCcchhHHHhccC
Q 043452          150 QHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFT---GRLPQNMSTILQK  226 (384)
Q Consensus       150 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~  226 (384)
                      +++|+.+.+.+ .++ .++...|..|++|+.+++..+.+......+|..+.++..+........   ..+....+..+..
T Consensus       100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            56666666655 443 455555556666666666665555444555555544444433321100   0001111111333


Q ss_pred             Cc-EEEccCCcCC-CccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEe
Q 043452          227 LV-YLDMSKNKFE-GSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLS  304 (384)
Q Consensus       227 L~-~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~  304 (384)
                      |+ .+.+.....- ......-....++..+.+.+.-.. .....+...|++|+.+++++|.+......+|..|.+|+.++
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~  256 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK  256 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence            33 2233221100 000000112345566666654221 22222334589999999999999988888999999999999


Q ss_pred             CCCCcCCcccchhhhhccccce-EEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeC
Q 043452          305 LDNNNFSGRISNGFLSSARSLQ-VLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDV  378 (384)
Q Consensus       305 l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l  378 (384)
                      +.++ ++ .+...+|..|++|+ .+++.+ .++.+.+.+|.+|++|+.|++++++++.+.+.+|.+|++|+.++.
T Consensus       257 l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          257 LPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            9987 65 78888899999999 999999 777678899999999999999999999888889999999999874

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.75  E-value=2.2e-17  Score=148.28  Aligned_cols=319  Identities=12%  Similarity=0.096  Sum_probs=232.5

Q ss_pred             ccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccCceeec
Q 043452           41 AIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE  120 (384)
Q Consensus        41 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~  120 (384)
                      .++.+...+|..|.+|+.+.++.+ ++.+...+|.+|++|+.+++..+ ++. +....+..+++|+.+.+...  .....
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~c~~L~~i~~p~~--l~~i~  132 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKM-IGRCTFSGCYALKSILLPLM--LKSIG  132 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTTTTCTTCCCCCCCTT--CCEEC
T ss_pred             eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceE-ccchhhcccccchhhcccCc--eeeec
Confidence            355566788999999999999864 66677889999999999999865 332 23357888888887666432  33444


Q ss_pred             cCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCcccc
Q 043452          121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLD  200 (384)
Q Consensus       121 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  200 (384)
                      ..+|..+..++....... ..-....+..+++|+.+.+.+...  .+....+..+++|+.+.+..+ +......++..+.
T Consensus       133 ~~aF~~~~~~~~~~~~~~-~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~  208 (394)
T 4fs7_A          133 VEAFKGCDFKEITIPEGV-TVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECI  208 (394)
T ss_dssp             TTTTTTCCCSEEECCTTC-CEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCT
T ss_pred             ceeeecccccccccCccc-cccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhcccc
Confidence            556666544333322211 111345678899999999976532  466667889999999999765 5555667788899


Q ss_pred             CCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEE
Q 043452          201 FLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLD  280 (384)
Q Consensus       201 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  280 (384)
                      .|+.+.+..+...  ..... ..+..|+.+.+... ++......+..+..++.+.+..+..  ......|..+..++.+.
T Consensus       209 ~L~~i~~~~~~~~--i~~~~-~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~  282 (394)
T 4fs7_A          209 LLENMEFPNSLYY--LGDFA-LSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVI  282 (394)
T ss_dssp             TCCBCCCCTTCCE--ECTTT-TTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEE
T ss_pred             ccceeecCCCceE--eehhh-cccCCCceEEECCC-ceecccccccccccceeEEcCCCcc--eeeccccccccccceec
Confidence            9999888765432  11112 22578999988654 3334456677889999999987654  45566778899999988


Q ss_pred             ccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccc
Q 043452          281 LSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE  360 (384)
Q Consensus       281 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  360 (384)
                      .....+   ...++..+.+|+.+.+..+ ++ .+...+|..|.+|+.+++..+ ++.+...+|.+|++|+.+++..+ ++
T Consensus       283 ~~~~~i---~~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~  355 (394)
T 4fs7_A          283 YGSVIV---PEKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR  355 (394)
T ss_dssp             ECSSEE---CTTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred             cCceee---ccccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc
Confidence            876543   3456778999999999764 44 677788999999999999864 66577889999999999999876 66


Q ss_pred             cccccccccCCCCceEeCcCC
Q 043452          361 GNIPVQLKNLEALEILDVSEN  381 (384)
Q Consensus       361 ~~~~~~~~~~~~L~~l~l~~~  381 (384)
                      .+...+|.+|++|+.+++.++
T Consensus       356 ~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          356 KIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             EECTTTBTTCTTCCEEEEEGG
T ss_pred             EehHHHhhCCCCCCEEEECCC
Confidence            678889999999999998654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=6.9e-19  Score=154.21  Aligned_cols=287  Identities=15%  Similarity=0.153  Sum_probs=174.7

Q ss_pred             ccccccEEecCCCccccCCchhhhc-CCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchh
Q 043452           28 ELKNLIELNLEGNAIEGPLPQCLKN-LTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLE  106 (384)
Q Consensus        28 ~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  106 (384)
                      .+.+++.|.+++.- .......+.. +++|+.||++++.+.... ..-..++.++.+.+..+.                 
T Consensus        23 ~~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~-~~~~~~~~~~~~~~~~~~-----------------   83 (329)
T 3sb4_A           23 EANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYS-GKAGTYPNGKFYIYMANF-----------------   83 (329)
T ss_dssp             HHHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEE-ESSSSSGGGCCEEECTTE-----------------
T ss_pred             hhCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEec-Cccccccccccccccccc-----------------
Confidence            35677778777642 2122233444 677888888877765111 001112223333333332                 


Q ss_pred             hhhhhcccCceeeccCCCCC--------CCCccEEEccCCCCCCc-cccccccCCCCeEeccCCccCCCcHHHHhhhCCC
Q 043452          107 FFMLSLVNNTLEVETENWLP--------TSQLKVLHLRNCNLNGT-LGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTK  177 (384)
Q Consensus       107 ~l~l~~~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  177 (384)
                                  ....+|..        +++|+.+.+.. .+..+ ...|..|++|+.+++.++.+. .++...|..+.+
T Consensus        84 ------------I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~  149 (329)
T 3sb4_A           84 ------------VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVT  149 (329)
T ss_dssp             ------------ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTC
T ss_pred             ------------cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCc
Confidence                        22233444        56666666665 44443 334666677777777766654 455555556666


Q ss_pred             ccEEEcCCCC----CcCcccccCccccCCc-eEeeecCccCCCcchhHHHh---ccCCcEEEccCCcCCCccchhccCCC
Q 043452          178 LEVLRLTNNS----FTGSLQLSNSKLDFLH-HLDISSNSFTGRLPQNMSTI---LQKLVYLDMSKNKFEGSISSSISEMK  249 (384)
Q Consensus       178 L~~L~l~~~~----~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~  249 (384)
                      +..+......    .......++..+..|+ .+.+....   ..+..+...   ..++..+.+.+.-...........++
T Consensus       150 l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~  226 (329)
T 3sb4_A          150 AIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMP  226 (329)
T ss_dssp             EEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCT
T ss_pred             eEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcC
Confidence            6666555421    1222233445556665 34333221   333333332   44667776665421111111112478


Q ss_pred             CCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcC-eEeCCCCcCCcccchhhhhccccceEE
Q 043452          250 DLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLG-WLSLDNNNFSGRISNGFLSSARSLQVL  328 (384)
Q Consensus       250 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~~L~~L  328 (384)
                      +|+.+++.+|.+. .++...|.+|++|+.+++.++ +......+|..|.+|+ .+++.+ .++ .+....|..|++|+.+
T Consensus       227 ~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          227 NLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             TCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEE
T ss_pred             CCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEE
Confidence            8999999888877 777778888999999999887 6667778888999999 999987 666 6777888999999999


Q ss_pred             EcCCCccccccchhhhccCCccEEEc
Q 043452          329 DISNNKLVGQIPSWIGNFSSLALLTV  354 (384)
Q Consensus       329 ~l~~~~~~~~~~~~~~~~~~L~~L~l  354 (384)
                      ++..+.+....+.+|.+|++|+.++.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            99999888788889999999998864

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=1.9e-17  Score=136.99  Aligned_cols=155  Identities=20%  Similarity=0.207  Sum_probs=115.1

Q ss_pred             CCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEE
Q 043452          201 FLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLD  280 (384)
Q Consensus       201 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  280 (384)
                      ..+.++.+++.+. .++..+   .++|++|++++|.+++..+..+..+++|++|++++|.+. ..+...+.++++|++|+
T Consensus        20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEE
Confidence            4567788777776 666544   367888888888888777777778888888888888875 55556667788888888


Q ss_pred             ccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccc
Q 043452          281 LSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE  360 (384)
Q Consensus       281 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  360 (384)
                      +++|.+....+..+..+++|++|++++|.++ .++.. +..+++|+.|++++|.+....+..+..+++|+.|++++|++.
T Consensus        95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            8888887766666777788888888888877 45444 355678888888888777555566777888888888888776


Q ss_pred             cc
Q 043452          361 GN  362 (384)
Q Consensus       361 ~~  362 (384)
                      ..
T Consensus       173 c~  174 (229)
T 3e6j_A          173 CE  174 (229)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=2e-17  Score=155.33  Aligned_cols=173  Identities=21%  Similarity=0.274  Sum_probs=104.9

Q ss_pred             ccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccC
Q 043452          147 LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK  226 (384)
Q Consensus       147 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  226 (384)
                      +..+++|+.|+++++.+. .++.  +..+++|+.|++++|.+....+  +..+++|+.|++++|.+. ..+ .+ ..+++
T Consensus        39 ~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l-~~l~~  110 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SL-KDLKK  110 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TS-TTCTT
T ss_pred             hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hh-ccCCC
Confidence            456677777777777765 4442  4567777777777777665443  566777777777777665 222 22 23566


Q ss_pred             CcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCC
Q 043452          227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLD  306 (384)
Q Consensus       227 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  306 (384)
                      |++|++++|.+.+.  ..+..+++|+.|++++|.+.+.   ..+..+++|+.|++++|.+.+..+  +..+++|+.|+++
T Consensus       111 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls  183 (605)
T 1m9s_A          111 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS  183 (605)
T ss_dssp             CCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             CCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECc
Confidence            67777776666643  3455666666666666666522   344556666666666666655444  5556666666666


Q ss_pred             CCcCCcccchhhhhccccceEEEcCCCcccc
Q 043452          307 NNNFSGRISNGFLSSARSLQVLDISNNKLVG  337 (384)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  337 (384)
                      +|.+++ ++  .+..+++|+.|++++|.+.+
T Consensus       184 ~N~i~~-l~--~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          184 KNHISD-LR--ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             SSCCCB-CG--GGTTCTTCSEEECCSEEEEC
T ss_pred             CCCCCC-Ch--HHccCCCCCEEEccCCcCcC
Confidence            666652 22  24445666666666665553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.8e-17  Score=155.76  Aligned_cols=198  Identities=22%  Similarity=0.232  Sum_probs=154.9

Q ss_pred             CCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEc
Q 043452          153 LKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDM  232 (384)
Q Consensus       153 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  232 (384)
                      +..+.+....+.+..+   ...+++|+.|+++++.+....  .+..+++|+.|++++|.+.+ .+.  ...+++|+.|++
T Consensus        23 l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEEC
T ss_pred             HHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEEC
Confidence            4455556655553333   346688999999999887543  57889999999999999884 443  445899999999


Q ss_pred             cCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCc
Q 043452          233 SKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSG  312 (384)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  312 (384)
                      ++|.+.+.  ..+..+++|+.|++++|.+.+ .  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|.+.+
T Consensus        95 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A           95 DENKIKDL--SSLKDLKKLKSLSLEHNGISD-I--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             CSSCCCCC--TTSTTCTTCCEEECTTSCCCC-C--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred             cCCCCCCC--hhhccCCCCCEEEecCCCCCC-C--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence            99999853  367889999999999999874 2  3467789999999999999865  567889999999999999984


Q ss_pred             ccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccC
Q 043452          313 RISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNL  370 (384)
Q Consensus       313 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  370 (384)
                      ..+   +..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|++.+.....+..+
T Consensus       168 ~~~---l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l  220 (605)
T 1m9s_A          168 IVP---LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNL  220 (605)
T ss_dssp             CGG---GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred             chh---hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccE
Confidence            433   67789999999999999854  468899999999999999986544333333

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.74  E-value=3.6e-17  Score=152.01  Aligned_cols=188  Identities=21%  Similarity=0.264  Sum_probs=138.9

Q ss_pred             CCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEE
Q 043452          151 HDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYL  230 (384)
Q Consensus       151 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  230 (384)
                      .+++.|+++++.++ .+|..+   .++|++|++++|.++...    ..+++|++|++++|.+.+ ++. +.   .+|++|
T Consensus        59 ~~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~---~~L~~L  125 (571)
T 3cvr_A           59 NQFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALISLP----ELPASLEYLDACDNRLST-LPE-LP---ASLKHL  125 (571)
T ss_dssp             TTCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC-CC---TTCCEE
T ss_pred             CCccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-cch-hh---cCCCEE
Confidence            38889999888876 366533   377899999888887433    446888899998888873 555 32   388889


Q ss_pred             EccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcC
Q 043452          231 DMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNF  310 (384)
Q Consensus       231 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  310 (384)
                      ++++|.+++. +.   .+++|+.|++++|.+++ .+.    .+++|++|++++|.+.+ .|. +.  ++|+.|++++|.+
T Consensus       126 ~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L  192 (571)
T 3cvr_A          126 DVDNNQLTML-PE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLL  192 (571)
T ss_dssp             ECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCC
T ss_pred             ECCCCcCCCC-CC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCC
Confidence            9988888763 33   57888899998888873 333    46788888888888876 344 54  7888888888888


Q ss_pred             Ccccchhhhhccccc-------eEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccC
Q 043452          311 SGRISNGFLSSARSL-------QVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNL  370 (384)
Q Consensus       311 ~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  370 (384)
                      + .++. + .  .+|       +.|++++|.++ .+|..+..+++|+.|++++|++++..|..+..+
T Consensus       193 ~-~lp~-~-~--~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          193 E-SLPA-V-P--VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             S-SCCC-C-C----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             C-chhh-H-H--HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            7 4444 2 2  155       88888888888 567777778888888888888888777776654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=1.1e-17  Score=141.33  Aligned_cols=169  Identities=20%  Similarity=0.302  Sum_probs=122.6

Q ss_pred             CCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEE
Q 043452          176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLD  255 (384)
Q Consensus       176 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  255 (384)
                      .++..++++.+.+++..  .+..+++|++|++++|.+. .++ .+ ..+++|++|++++|.+++..+  +..+++|++|+
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GM-QFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HH-hhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            44566667777666443  4567888888888888876 444 33 347888888888888876544  77788888888


Q ss_pred             eeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcc
Q 043452          256 LSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL  335 (384)
Q Consensus       256 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  335 (384)
                      +++|.+.+ .+.  +.. ++|++|++++|.+.+.  ..+..+++|++|++++|.+++ ++  .+..+++|+.|++++|.+
T Consensus        92 L~~N~l~~-l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A           92 VNRNRLKN-LNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             CCSSCCSC-CTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCC
T ss_pred             CCCCccCC-cCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcC
Confidence            88888763 222  122 7888888888888753  346778888888888888873 32  356678888888888888


Q ss_pred             ccccchhhhccCCccEEEccCcccccc
Q 043452          336 VGQIPSWIGNFSSLALLTVSKNLLEGN  362 (384)
Q Consensus       336 ~~~~~~~~~~~~~L~~L~l~~~~~~~~  362 (384)
                      .+.  ..+..+++|+.|++++|++...
T Consensus       163 ~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          163 TNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cch--HHhccCCCCCEEeCCCCcccCC
Confidence            755  6677888888888888888754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=4.8e-17  Score=133.64  Aligned_cols=132  Identities=19%  Similarity=0.277  Sum_probs=58.5

Q ss_pred             CcEEEccCCcCCCccc-hhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeC
Q 043452          227 LVYLDMSKNKFEGSIS-SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSL  305 (384)
Q Consensus       227 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l  305 (384)
                      +++|++++|.++...+ ..+..+++|++|++++|.+. ......+.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            3444444444443211 22344444444444444443 222223344444444444444444444444444444555555


Q ss_pred             CCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccc
Q 043452          306 DNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE  360 (384)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  360 (384)
                      ++|.++ .+.+..+..+++|+.|++++|.+++..|.+|..+++|+.|++++|++.
T Consensus       113 s~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          113 RSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTSCCC-CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCcCC-eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            554444 222222334444555555555444444444444555555555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.72  E-value=1.6e-16  Score=147.61  Aligned_cols=189  Identities=24%  Similarity=0.313  Sum_probs=153.3

Q ss_pred             CccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeee
Q 043452          129 QLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDIS  208 (384)
Q Consensus       129 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  208 (384)
                      +++.|+++++.+.+++..+  .++|+.|++++|.++ .+|    ..+++|++|++++|.++.. +. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECC
Confidence            8999999999998877655  378999999999987 677    4679999999999999863 33 443  99999999


Q ss_pred             cCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccc
Q 043452          209 SNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCG  288 (384)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  288 (384)
                      +|.+. .++.    .+++|+.|++++|.++.. +.   .+++|++|++++|.+++ .+.  +.  ++|+.|++++|.+..
T Consensus       129 ~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N~L~~  194 (571)
T 3cvr_A          129 NNQLT-MLPE----LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTNLLES  194 (571)
T ss_dssp             SSCCS-CCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSSCCSS
T ss_pred             CCcCC-CCCC----cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCC-cch--hh--CCCCEEECcCCCCCc
Confidence            99998 4665    478999999999999863 33   56899999999999984 444  33  899999999999984


Q ss_pred             cccccccccCCc-------CeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCC
Q 043452          289 QVSPKFMNLTQL-------GWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSS  348 (384)
Q Consensus       289 ~~~~~~~~~~~L-------~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  348 (384)
                       .|. +..  +|       +.|++++|.++ .++..++. +++|+.|++++|.+++..|..+..++.
T Consensus       195 -lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          195 -LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS-LDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             -CCC-CC----------CCEEEECCSSCCC-CCCGGGGG-SCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             -hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc-CCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence             444 543  67       99999999998 67766655 799999999999999888888877544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=5.7e-17  Score=133.24  Aligned_cols=151  Identities=24%  Similarity=0.364  Sum_probs=76.6

Q ss_pred             cEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeec
Q 043452          179 EVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSR  258 (384)
Q Consensus       179 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  258 (384)
                      +.++.+++.++.... .+  .++++.|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus        14 ~~v~c~~~~l~~iP~-~l--~~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPT-NL--PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCSSCCS-SC--CTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcCcCCC-cc--CcCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            345555554443222 11  145555555555555 33333333355555555555555544455555555555555555


Q ss_pred             cccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcc
Q 043452          259 NQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL  335 (384)
Q Consensus       259 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  335 (384)
                      |.+. ..+...|.++++|++|++++|.+.+..+..+..+++|+.|++++|.++ .++...+..+++|+.|++++|.+
T Consensus        90 N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           90 NKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCc
Confidence            5554 344444455555555555555555555555555555555555555555 33333344445555555555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=1.1e-16  Score=129.31  Aligned_cols=154  Identities=21%  Similarity=0.289  Sum_probs=119.9

Q ss_pred             ccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcc
Q 043452          197 SKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSL  276 (384)
Q Consensus       197 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  276 (384)
                      ..+++|++|+++++.+. .++ .+ ..+++|++|++++|.++..  ..+..+++|++|++++|.+.+.. ...+..+++|
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GI-EYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDK-IPNLSGLTSL  114 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TG-GGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGG-SCCCTTCTTC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HH-hcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCccc-ChhhcCCCCC
Confidence            56778888888888877 444 33 3478889999988866533  46778899999999999887433 3445678999


Q ss_pred             eEEEccCCcccccccccccccCCcCeEeCCCCc-CCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEcc
Q 043452          277 WLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNN-FSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVS  355 (384)
Q Consensus       277 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  355 (384)
                      ++|++++|.+.+..+..+..+++|++|++++|. ++ .++  .+..+++|+.|++++|.+.+. + .+..+++|+.|+++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~  189 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAF  189 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEEC
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEee
Confidence            999999999988778888899999999999998 65 444  367789999999999999853 3 78899999999999


Q ss_pred             Cccccc
Q 043452          356 KNLLEG  361 (384)
Q Consensus       356 ~~~~~~  361 (384)
                      +|++.+
T Consensus       190 ~N~i~~  195 (197)
T 4ezg_A          190 SQTIGG  195 (197)
T ss_dssp             BC----
T ss_pred             CcccCC
Confidence            998763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=1e-16  Score=142.16  Aligned_cols=176  Identities=23%  Similarity=0.226  Sum_probs=110.0

Q ss_pred             CeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCc-cccCCceEeeecCccCCCcchhHHHhccCCcEEEc
Q 043452          154 KSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNS-KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDM  232 (384)
Q Consensus       154 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  232 (384)
                      +.++++++.++ .+|..+   .+.++.|++++|.++......+. .+++|++|++++|.+. .++...+..+++|++|++
T Consensus        21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence            57788877775 566432   34577888888877766666665 6777777777777776 444333344667777777


Q ss_pred             cCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccc---cccCCcCeEeCCCCc
Q 043452          233 SKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKF---MNLTQLGWLSLDNNN  309 (384)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~~  309 (384)
                      ++|.++...+..+..+++|+.|++++|.+. ......+.++++|+.|++++|.+....+..+   ..+++|+.|++++|.
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            777776555555666677777777777765 3334445566677777777776665444444   346666666666666


Q ss_pred             CCcccchhhhhcccc--ceEEEcCCCccc
Q 043452          310 FSGRISNGFLSSARS--LQVLDISNNKLV  336 (384)
Q Consensus       310 ~~~~~~~~~~~~~~~--L~~L~l~~~~~~  336 (384)
                      ++ .++...+..++.  ++.|++++|.+.
T Consensus       175 l~-~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          175 LK-KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CC-CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CC-ccCHHHhhhccHhhcceEEecCCCcc
Confidence            66 444444444444  356666666553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=2.3e-16  Score=130.52  Aligned_cols=152  Identities=20%  Similarity=0.194  Sum_probs=98.8

Q ss_pred             ccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEee
Q 043452          178 LEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLS  257 (384)
Q Consensus       178 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  257 (384)
                      -+.++.+++.+..... .+  .++|++|++++|.+.+ .....+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        21 ~~~v~c~~~~l~~ip~-~~--~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPA-GI--PTNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcCccCC-CC--CCCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            3456666665553332 11  2677777777777763 333333346777777777777765555556677777777777


Q ss_pred             ccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccc
Q 043452          258 RNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV  336 (384)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  336 (384)
                      +|.+. ..+...+..+++|++|++++|.+. ..|..+..+++|+.|++++|.++ .++...+..+++|+.|++++|.+.
T Consensus        97 ~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           97 TNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCcc
Confidence            77776 444555566777777777777776 44555667777777777777776 444455666677777777777665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=3.4e-17  Score=138.38  Aligned_cols=171  Identities=19%  Similarity=0.220  Sum_probs=134.2

Q ss_pred             ccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCc
Q 043452          149 KQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLV  228 (384)
Q Consensus       149 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  228 (384)
                      .+.++..++++++.++ .++.  +..+++|++|+++++.+....  .+..+++|++|++++|.+. ..+.  ...+++|+
T Consensus        17 ~l~~l~~l~l~~~~i~-~~~~--~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~   88 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVT-DLVS--QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLE   88 (263)
T ss_dssp             HHHHHHHHHHTCSCTT-SEEC--HHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCC
T ss_pred             HHHHHHHHHhcCCCcc-cccc--hhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccC-CChh--hccCCCCC
Confidence            3456777788888776 4442  457799999999999887543  6778899999999999988 4444  44588999


Q ss_pred             EEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCC
Q 043452          229 YLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNN  308 (384)
Q Consensus       229 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  308 (384)
                      +|++++|.+++...  +.. ++|++|++++|.+.+.   ..+..+++|++|++++|.+.+..  .+..+++|++|++++|
T Consensus        89 ~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~---~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A           89 ELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT---DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGN  160 (263)
T ss_dssp             EEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS---GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTS
T ss_pred             EEECCCCccCCcCc--ccc-CcccEEEccCCccCCC---hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCC
Confidence            99999999886432  223 8999999999998742   24677899999999999988652  5778899999999999


Q ss_pred             cCCcccchhhhhccccceEEEcCCCccccc
Q 043452          309 NFSGRISNGFLSSARSLQVLDISNNKLVGQ  338 (384)
Q Consensus       309 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  338 (384)
                      .+++.   ..+..+++|+.|++++|.+...
T Consensus       161 ~i~~~---~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          161 EITNT---GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCCBC---TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cCcch---HHhccCCCCCEEeCCCCcccCC
Confidence            99844   3466778999999999988754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.69  E-value=4.8e-15  Score=133.03  Aligned_cols=334  Identities=10%  Similarity=0.099  Sum_probs=187.4

Q ss_pred             ccchhhhhccc-cccEEecCCCccccCCchhhhcCCCCCEEEeecC---cccCccCccccCCCCccEEECCCCccccccc
Q 043452           20 SLENQGICELK-NLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSN---QLSGSLPSVIASLTSLQYLDLSDNYFQGIFY   95 (384)
Q Consensus        20 ~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~   95 (384)
                      .++..+|.+++ .|+.+.|..+ ++.+...+|.+|.+|+.+.+..+   .++.....+|.+|.+|+.+.+..+ ++.. .
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I-~  129 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI-D  129 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE-C
T ss_pred             EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee-h
Confidence            67778888885 5999999765 55467788999999999999764   355566678888888888777643 2211 2


Q ss_pred             cccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhC
Q 043452           96 LSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHN  175 (384)
Q Consensus        96 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  175 (384)
                      ...+..+.+|+.+.+..  ........+|..+..|+.+.+..+ +..+....-...+|+.+.+.....  .+....+..+
T Consensus       130 ~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~--~i~~~af~~c  204 (394)
T 4gt6_A          130 SEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT--RIGTNAFSEC  204 (394)
T ss_dssp             TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC--EECTTTTTTC
T ss_pred             hhhhhhhcccccccccc--eeeeecccceecccccccccccce-eeEeccccccccceeEEEECCccc--ccccchhhhc
Confidence            23344444554444431  122233344444455555544322 111221111223444444433211  1122223344


Q ss_pred             CCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEE
Q 043452          176 TKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLD  255 (384)
Q Consensus       176 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  255 (384)
                      .+++................+           ..+... ............+..+.+... ++.....++..|.+|+.+.
T Consensus       205 ~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~  271 (394)
T 4gt6_A          205 FALSTITSDSESYPAIDNVLY-----------EKSANG-DYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVK  271 (394)
T ss_dssp             TTCCEEEECCSSSCBSSSCEE-----------EECTTS-CEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEE
T ss_pred             cccceecccccccccccceee-----------cccccc-cccccccccccccceEEcCCc-ceEcccceeeecccccEEe
Confidence            444444333222111000000           000000 000000000123444444322 2223445677888899998


Q ss_pred             eeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcc
Q 043452          256 LSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL  335 (384)
Q Consensus       256 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  335 (384)
                      +..+..  .+....|.+|++|+.+.+.. .+......+|..|.+|+.+++..+ ++ .+...+|.+|.+|+++.+..+ +
T Consensus       272 lp~~~~--~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v  345 (394)
T 4gt6_A          272 MPDSVV--SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-V  345 (394)
T ss_dssp             CCTTCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-C
T ss_pred             cccccc--eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-c
Confidence            876543  45666778899999998864 455566678888999999999764 44 677778889999999999764 6


Q ss_pred             ccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452          336 VGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL  383 (384)
Q Consensus       336 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  383 (384)
                      +.+...+|.+|++|+.+++.++....   ..+..+..|+.+++..+.+
T Consensus       346 ~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          346 TKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            66777899999999999999876531   4577888999998876654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.68  E-value=6.7e-16  Score=138.05  Aligned_cols=245  Identities=10%  Similarity=0.093  Sum_probs=161.8

Q ss_pred             cCCCCCCCCccEEEccCCCCCCcc-ccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccc
Q 043452          121 TENWLPTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKL  199 (384)
Q Consensus       121 ~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  199 (384)
                      ..+|.++ +|+.+.+..+ +..+. ..+.+ .+|+.+.+.. .+. .+....|..|++|+.+++..+.++.....+|. +
T Consensus       129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~  202 (401)
T 4fdw_A          129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-Y  202 (401)
T ss_dssp             TTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-T
T ss_pred             HhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-e
Confidence            3444443 5666666543 33322 22333 3577777765 222 44445566777777777777666655555555 4


Q ss_pred             cCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEE
Q 043452          200 DFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLL  279 (384)
Q Consensus       200 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  279 (384)
                      .+|+.+.+..+ +. .+....+..|++|+.+.+..+ ++.....++.. .+|+.+.+.. .+. .+....|.+|++|+.+
T Consensus       203 ~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~l  276 (401)
T 4fdw_A          203 AGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT-NIASRAFYYCPELAEV  276 (401)
T ss_dssp             CCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC-EECTTTTTTCTTCCEE
T ss_pred             cccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc-EEChhHhhCCCCCCEE
Confidence            67777777643 44 455555566777777777653 44344455555 5788888844 333 5566677778888888


Q ss_pred             EccCCccc-----ccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEc
Q 043452          280 DLSHNSFC-----GQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTV  354 (384)
Q Consensus       280 ~l~~~~~~-----~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  354 (384)
                      ++.++.+.     .....+|..|++|+.+.+.+ .++ .+...+|..|.+|+.+.+..+ ++.+...+|.+| +|+.|++
T Consensus       277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l  352 (401)
T 4fdw_A          277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKV  352 (401)
T ss_dssp             EEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEE
T ss_pred             EeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEE
Confidence            88776554     35566788888888888874 455 677777888888998888654 655667888888 8999999


Q ss_pred             cCcccccccccccccCC-CCceEeCcCC
Q 043452          355 SKNLLEGNIPVQLKNLE-ALEILDVSEN  381 (384)
Q Consensus       355 ~~~~~~~~~~~~~~~~~-~L~~l~l~~~  381 (384)
                      .++......+..|..++ .+..+++..+
T Consensus       353 ~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          353 EGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             CCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             cCCCCcccccccccCCCCCccEEEeCHH
Confidence            88887766777788885 6788877654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.66  E-value=2.8e-15  Score=134.03  Aligned_cols=267  Identities=13%  Similarity=0.150  Sum_probs=165.1

Q ss_pred             cCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCcc
Q 043452           52 NLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLK  131 (384)
Q Consensus        52 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~  131 (384)
                      .+..++.+.++++ ++.+...+|.++ +|+.+.+..+ ++..                          ...+|.++ +|+
T Consensus       111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I--------------------------~~~aF~~~-~L~  160 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSI--------------------------GDMAFFNS-TVQ  160 (401)
T ss_dssp             ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEE--------------------------CTTTTTTC-CCC
T ss_pred             ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEE--------------------------CHHhcCCC-Cce
Confidence            4567777777763 343556667665 6777777654 2221                          11223332 355


Q ss_pred             EEEccCCCCCC-ccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecC
Q 043452          132 VLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSN  210 (384)
Q Consensus       132 ~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  210 (384)
                      .+.+.. .+.. ....+..|++|+.+++.++.++ .++...|. +++|+.+.+..+ +......+|..+++|+.+++..+
T Consensus       161 ~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~  236 (401)
T 4fdw_A          161 EIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN  236 (401)
T ss_dssp             EEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT
T ss_pred             EEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC
Confidence            555543 2222 2234555666666666655554 44444443 466666666532 44455556666667777766653


Q ss_pred             ccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccc----cccccchhccCCcceEEEccCCcc
Q 043452          211 SFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFS----GELSAPLLTGCFSLWLLDLSHNSF  286 (384)
Q Consensus       211 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~  286 (384)
                       +. .+....+.. .+|+.+.+. +.++.....++..|++|+.+.+.++...    ..+....|.+|++|+.+.+.+ .+
T Consensus       237 -l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i  311 (401)
T 4fdw_A          237 -VS-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI  311 (401)
T ss_dssp             -CC-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC
T ss_pred             -cc-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce
Confidence             32 333333333 467777774 3344455667777788888888776542    124556777888888888884 46


Q ss_pred             cccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccC-CccEEEccCcccc
Q 043452          287 CGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFS-SLALLTVSKNLLE  360 (384)
Q Consensus       287 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~  360 (384)
                      ......+|..|.+|+.+.+..+ ++ .+...+|..| +|+.+.+.+|........+|.+++ +++.|.+..+.+.
T Consensus       312 ~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          312 RILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             EEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            6666778888888888888654 44 5666778888 888888888877666667777774 6788888776653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=7.3e-16  Score=121.12  Aligned_cols=133  Identities=22%  Similarity=0.176  Sum_probs=68.4

Q ss_pred             cCCcEEEccCCcCC-CccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeE
Q 043452          225 QKLVYLDMSKNKFE-GSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWL  303 (384)
Q Consensus       225 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  303 (384)
                      ++|++|++++|.++ +..+..+..+++|+.|++++|.+.+.   ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            45666666666655 33344445556666666666665422   334445555555555555554444444445555555


Q ss_pred             eCCCCcCCcccchhhhhccccceEEEcCCCccccccc---hhhhccCCccEEEccCcccc
Q 043452          304 SLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIP---SWIGNFSSLALLTVSKNLLE  360 (384)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~  360 (384)
                      ++++|.+++......+..+++|+.|++++|.+++..+   ..+..+++|+.|++++|+..
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            5555555422221234444555555555555553322   24455555555555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=2.7e-18  Score=160.34  Aligned_cols=204  Identities=21%  Similarity=0.186  Sum_probs=137.6

Q ss_pred             cccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCC-------------CcCcccccCccccCCceEe-eecCccC
Q 043452          148 QKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNS-------------FTGSLQLSNSKLDFLHHLD-ISSNSFT  213 (384)
Q Consensus       148 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~  213 (384)
                      ..+++|+.|+++++.+. .+|..+ +.+++|+.|+++++.             .....+..+..+++|+.|+ ++.+.+ 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHH-HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-
Confidence            45677888888887775 666665 467777777775543             1112222333334444443 222211 


Q ss_pred             CCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccccc
Q 043452          214 GRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPK  293 (384)
Q Consensus       214 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  293 (384)
                                 +.|+.+.+.++.++..     . ...|+.|++++|.+++ .+.  +..+++|+.|++++|.+. ..|..
T Consensus       423 -----------~~L~~l~l~~n~i~~l-----~-~~~L~~L~Ls~n~l~~-lp~--~~~l~~L~~L~Ls~N~l~-~lp~~  481 (567)
T 1dce_A          423 -----------DDLRSKFLLENSVLKM-----E-YADVRVLHLAHKDLTV-LCH--LEQLLLVTHLDLSHNRLR-ALPPA  481 (567)
T ss_dssp             -----------HHHHHHHHHHHHHHHH-----H-HTTCSEEECTTSCCSS-CCC--GGGGTTCCEEECCSSCCC-CCCGG
T ss_pred             -----------chhhhhhhhccccccc-----C-ccCceEEEecCCCCCC-CcC--ccccccCcEeecCccccc-ccchh
Confidence                       1122222222222211     1 1358888888888873 333  677889999999999888 56778


Q ss_pred             ccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcccccc-chhhhccCCccEEEccCcccccccccc---ccc
Q 043452          294 FMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQI-PSWIGNFSSLALLTVSKNLLEGNIPVQ---LKN  369 (384)
Q Consensus       294 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~  369 (384)
                      +..+++|+.|++++|.+++ ++  .+..+++|+.|++++|.+++.. |..+.++++|+.|++++|++++..+..   +..
T Consensus       482 ~~~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~  558 (567)
T 1dce_A          482 LAALRCLEVLQASDNALEN-VD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM  558 (567)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHH
T ss_pred             hhcCCCCCEEECCCCCCCC-Cc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHH
Confidence            8899999999999999984 44  4677899999999999998766 899999999999999999998654432   345


Q ss_pred             CCCCceEeC
Q 043452          370 LEALEILDV  378 (384)
Q Consensus       370 ~~~L~~l~l  378 (384)
                      +|+|+.|++
T Consensus       559 lp~L~~L~l  567 (567)
T 1dce_A          559 LPSVSSILT  567 (567)
T ss_dssp             CTTCSEEEC
T ss_pred             CcccCccCC
Confidence            899999864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=1.3e-15  Score=117.13  Aligned_cols=128  Identities=21%  Similarity=0.195  Sum_probs=86.3

Q ss_pred             CCCcEEEeeccccc-cccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceE
Q 043452          249 KDLRFLDLSRNQFS-GELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQV  327 (384)
Q Consensus       249 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~  327 (384)
                      ++++.|++++|.+. +..+ ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++. .+..+..+++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTH   92 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCE
T ss_pred             ccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCE
Confidence            45666666666554 2222 2344566666666666666544  4566677788888888877743 3444555778888


Q ss_pred             EEcCCCccccc-cchhhhccCCccEEEccCcccccccc---cccccCCCCceEeCcC
Q 043452          328 LDISNNKLVGQ-IPSWIGNFSSLALLTVSKNLLEGNIP---VQLKNLEALEILDVSE  380 (384)
Q Consensus       328 L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~l~l~~  380 (384)
                      |++++|.+.+. .+..+..+++|+.|++++|++++..+   ..+..+++|+.|++++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            88888887753 34677888888888888888876555   4678888888888764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=1.3e-15  Score=119.66  Aligned_cols=135  Identities=19%  Similarity=0.128  Sum_probs=105.4

Q ss_pred             CCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccce
Q 043452          247 EMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQ  326 (384)
Q Consensus       247 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~  326 (384)
                      ..++|++|++++|.+.+......+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++. .+..+..+++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~   98 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLT   98 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCC
Confidence            3478999999999886222233456788999999999988765  6677888999999999988744 445566678999


Q ss_pred             EEEcCCCcccccc-chhhhccCCccEEEccCcccccccc---cccccCCCCceEeCcCCCCC
Q 043452          327 VLDISNNKLVGQI-PSWIGNFSSLALLTVSKNLLEGNIP---VQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       327 ~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~l~l~~~~~s  384 (384)
                      .|++++|.+.+.. +..+..+++|+.|++++|++++..+   ..+..+++|+.|++++|.++
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            9999999888542 3678889999999999999886554   47888999999999988763

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.63  E-value=2.8e-14  Score=128.08  Aligned_cols=314  Identities=12%  Similarity=0.135  Sum_probs=194.5

Q ss_pred             cccCCchhhhcCC-CCCEEEeecCcccCccCccccCCCCccEEECCCCc---cccccccccCCCCCchhhhhhhcccCce
Q 043452           42 IEGPLPQCLKNLT-RLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNY---FQGIFYLSSLGNHSNLEFFMLSLVNNTL  117 (384)
Q Consensus        42 ~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~~L~~l~l~~~~~~~  117 (384)
                      ++.+...+|..+. .|+.+.++.+ ++.+...+|.+|++|+.+.+..+.   ++. +....+..+.+|+.+.+...  ..
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~-Ig~~aF~~c~~L~~i~~~~~--~~  126 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKK-IGRQAFMFCSELTDIPILDS--VT  126 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCE-ECTTTTTTCTTCCBCGGGTT--CS
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeE-echhhchhcccceeeccCCc--cc
Confidence            4445567888885 6999999975 666788899999999999997653   222 22345666777776665432  33


Q ss_pred             eeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCc
Q 043452          118 EVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNS  197 (384)
Q Consensus       118 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  197 (384)
                      .....+|..+.+|+.+.+...-..-....+..+..|+.+.+.+.- + .+....+. ..+|+.+.+... +......++.
T Consensus       127 ~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~~-~-~I~~~aF~-~~~l~~i~ip~~-~~~i~~~af~  202 (394)
T 4gt6_A          127 EIDSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDSV-T-AIEERAFT-GTALTQIHIPAK-VTRIGTNAFS  202 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTT-TCCCSEEEECTT-CCEECTTTTT
T ss_pred             eehhhhhhhhcccccccccceeeeecccceeccccccccccccee-e-Eecccccc-ccceeEEEECCc-ccccccchhh
Confidence            344556666666776666433211133345556666666665431 1 22222232 245666655432 2223334445


Q ss_pred             cccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcce
Q 043452          198 KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLW  277 (384)
Q Consensus       198 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  277 (384)
                      .+..++.......... .....+..           .+...............+..+.+... +. ......|.+|+.|+
T Consensus       203 ~c~~l~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~  268 (394)
T 4gt6_A          203 ECFALSTITSDSESYP-AIDNVLYE-----------KSANGDYALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLA  268 (394)
T ss_dssp             TCTTCCEEEECCSSSC-BSSSCEEE-----------ECTTSCEEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCC
T ss_pred             hccccceecccccccc-cccceeec-----------ccccccccccccccccccceEEcCCc-ce-Ecccceeeeccccc
Confidence            5555555544333222 11100000           00000011111122334555555432 22 34556788899999


Q ss_pred             EEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCc
Q 043452          278 LLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN  357 (384)
Q Consensus       278 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  357 (384)
                      .+.+.+... .....+|..|..|+.+.+.. .++ .+...+|..|.+|+++.+..+ ++.+...+|.+|++|+.+.+..+
T Consensus       269 ~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s  344 (394)
T 4gt6_A          269 SVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS  344 (394)
T ss_dssp             EEECCTTCC-EECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT
T ss_pred             EEecccccc-eecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc
Confidence            999976543 35667888999999999964 454 677788999999999999875 66567789999999999999764


Q ss_pred             ccccccccccccCCCCceEeCcCCC
Q 043452          358 LLEGNIPVQLKNLEALEILDVSENN  382 (384)
Q Consensus       358 ~~~~~~~~~~~~~~~L~~l~l~~~~  382 (384)
                       ++.+...+|.+|.+|+.+++.++.
T Consensus       345 -v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          345 -VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             -CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             -cCEEhHhHhhCCCCCCEEEECCce
Confidence             666788899999999999998763

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.63  E-value=1.6e-15  Score=121.78  Aligned_cols=130  Identities=21%  Similarity=0.258  Sum_probs=84.5

Q ss_pred             cEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCC
Q 043452          228 VYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDN  307 (384)
Q Consensus       228 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~  307 (384)
                      +.++++++.++.. +..+.  ++++.|++++|.+.+......+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~~i-p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEI-PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSC-CSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcC-ccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            5677777777533 33232  36777777777776333333456677777777777777766666677777777777777


Q ss_pred             CcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452          308 NNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG  361 (384)
Q Consensus       308 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  361 (384)
                      |.++ .++...+..+++|++|++++|.+++..|..+..+++|+.|++++|++..
T Consensus        88 N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            7776 3333445556677777777777766666666677777777777777654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=1.9e-15  Score=116.22  Aligned_cols=130  Identities=18%  Similarity=0.179  Sum_probs=103.3

Q ss_pred             ccCCcEEEccCCcCC-CccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCe
Q 043452          224 LQKLVYLDMSKNKFE-GSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGW  302 (384)
Q Consensus       224 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  302 (384)
                      .+++++|++++|.++ +..+..+..+++|+.|++++|.+.+.   ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            357888888888877 45566677888899999998888633   55677889999999999888767777777899999


Q ss_pred             EeCCCCcCCcccchhhhhccccceEEEcCCCccccccc---hhhhccCCccEEEccC
Q 043452          303 LSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIP---SWIGNFSSLALLTVSK  356 (384)
Q Consensus       303 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~  356 (384)
                      |++++|.+++......+..+++|++|++++|.+++..+   ..+..+++|+.|++++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999998743333557778999999999999886555   5788999999998874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=6e-15  Score=116.94  Aligned_cols=130  Identities=20%  Similarity=0.226  Sum_probs=76.0

Q ss_pred             CcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCC
Q 043452          227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLD  306 (384)
Q Consensus       227 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  306 (384)
                      .+.++++++.++... ..+  .++++.|++++|.+. ..+...+.++++|++|++++|.+....+..+..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~~~p-~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVP-TGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCSSCC-TTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCccCC-CCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            456666666665332 222  256677777776665 3444445556666666666666665555555566666666666


Q ss_pred             CCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452          307 NNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG  361 (384)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  361 (384)
                      +|.++ .++...+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+
T Consensus        85 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           85 ENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            66665 3444444555666666666666664444445566666666666666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=6.8e-15  Score=118.07  Aligned_cols=127  Identities=26%  Similarity=0.286  Sum_probs=69.1

Q ss_pred             cEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCC
Q 043452          228 VYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDN  307 (384)
Q Consensus       228 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~  307 (384)
                      +.++++++.++.. +..+  .++++.|++++|.+. ..+ ..+.++++|++|++++|.+....+..|..+++|++|++++
T Consensus        13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~-~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFT-LVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCC-SCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCc-hhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            4566666665532 2222  245666666666664 333 3445556666666666666555555555556666666666


Q ss_pred             CcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccc
Q 043452          308 NNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE  360 (384)
Q Consensus       308 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  360 (384)
                      |.++ .+++..+..+++|+.|++++|.++...+.+|..+++|+.|++++|++.
T Consensus        88 N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            6555 333334445555666666665555444445555555666666555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.58  E-value=7.1e-15  Score=116.32  Aligned_cols=130  Identities=21%  Similarity=0.138  Sum_probs=59.1

Q ss_pred             ccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeE
Q 043452          224 LQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWL  303 (384)
Q Consensus       224 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  303 (384)
                      +++|++|++++|.++.. +......++|+.|++++|.+.+.   ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus        18 ~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            34555566655555532 22222223555555555555421   233445555555555555543333333444555555


Q ss_pred             eCCCCcCCcccch-hhhhccccceEEEcCCCccccccch----hhhccCCccEEEccCccc
Q 043452          304 SLDNNNFSGRISN-GFLSSARSLQVLDISNNKLVGQIPS----WIGNFSSLALLTVSKNLL  359 (384)
Q Consensus       304 ~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~  359 (384)
                      ++++|.++ .++. ..+..+++|+.|++++|.+. ..|.    .+..+++|+.|++++|..
T Consensus        94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            55555543 2221 12334445555555555444 2222    244455555555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=1e-16  Score=149.75  Aligned_cols=179  Identities=19%  Similarity=0.243  Sum_probs=138.0

Q ss_pred             ccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCc-------------CCCccchhccCCCCCcEEE-eeccccc
Q 043452          197 SKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNK-------------FEGSISSSISEMKDLRFLD-LSRNQFS  262 (384)
Q Consensus       197 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~  262 (384)
                      ..+++|+.|++++|.+. .+|..+.. +++|+.|+++++.             ..+..+..+..+++|+.|+ ++.+.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            55778888888888876 67777665 7788888876553             2334556666777888877 5554332


Q ss_pred             cccccch-----hc--cCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCcc
Q 043452          263 GELSAPL-----LT--GCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKL  335 (384)
Q Consensus       263 ~~~~~~~-----~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  335 (384)
                       ......     +.  ....|+.|++++|.+++. |. +..+++|+.|++++|.++ .++. .+..+++|+.|++++|.+
T Consensus       424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l  498 (567)
T 1dce_A          424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNAL  498 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCC
T ss_pred             -hhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccch-hhhcCCCCCEEECCCCCC
Confidence             111100     00  123689999999999874 44 889999999999999998 6655 467789999999999999


Q ss_pred             ccccchhhhccCCccEEEccCccccccc-ccccccCCCCceEeCcCCCCC
Q 043452          336 VGQIPSWIGNFSSLALLTVSKNLLEGNI-PVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       336 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      ++ +| .+.++++|+.|++++|++++.. |..+..+++|+.|++++|+|+
T Consensus       499 ~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          499 EN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             CC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            95 56 8899999999999999999776 999999999999999999874

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.57  E-value=1.7e-14  Score=115.82  Aligned_cols=131  Identities=21%  Similarity=0.292  Sum_probs=107.2

Q ss_pred             CceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccch-hccCCCCCcEEEeeccccccccccchhccCCcceEEE
Q 043452          202 LHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISS-SISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLD  280 (384)
Q Consensus       202 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  280 (384)
                      .+.++++++.+. .++..+   .+++++|++++|.++...+. .+..+++|++|++++|.+. ......+.++++|++|+
T Consensus        10 ~~~l~~s~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           10 GTTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred             CCEEEcCCCCcC-cCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEE
Confidence            378899999886 677654   34899999999999866553 4788999999999999997 44445667799999999


Q ss_pred             ccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccc
Q 043452          281 LSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQ  338 (384)
Q Consensus       281 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  338 (384)
                      +++|.+.+..+..+..+++|++|++++|.+++ ..+..+..+++|+.|++++|.+...
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCe-eCHHHhhcCCCCCEEEeCCCCccCc
Confidence            99999998888888899999999999999984 4444566778999999999988754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.55  E-value=2.1e-15  Score=133.58  Aligned_cols=185  Identities=18%  Similarity=0.157  Sum_probs=118.5

Q ss_pred             ccCCceEeeecCccCCCcchhHHHh----ccCCcEEEccCCcCCCccchhc-cCCCCCcEEEeeccccccccccchh---
Q 043452          199 LDFLHHLDISSNSFTGRLPQNMSTI----LQKLVYLDMSKNKFEGSISSSI-SEMKDLRFLDLSRNQFSGELSAPLL---  270 (384)
Q Consensus       199 ~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~---  270 (384)
                      .+.|++|++++|.++......+...    +++|++|++++|.+++.....+ ..+++|+.|++++|.+++.....+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4678888888888875444444443    2578888888888765433222 2356788888888888643322221   


Q ss_pred             -ccCCcceEEEccCCccccccc----ccccccCCcCeEeCCCCcCCcccch---hhhhccccceEEEcCCCcccccc---
Q 043452          271 -TGCFSLWLLDLSHNSFCGQVS----PKFMNLTQLGWLSLDNNNFSGRISN---GFLSSARSLQVLDISNNKLVGQI---  339 (384)
Q Consensus       271 -~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~---  339 (384)
                       ...++|++|++++|.+++...    ..+..+++|++|++++|.+++....   ..+..+++|++|++++|.+++..   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             235778888888888875333    3345678888888888887643322   23344568888888888887543   


Q ss_pred             -chhhhccCCccEEEccCcccccccccccccCC--C---CceEe--CcCCCC
Q 043452          340 -PSWIGNFSSLALLTVSKNLLEGNIPVQLKNLE--A---LEILD--VSENNL  383 (384)
Q Consensus       340 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~---L~~l~--l~~~~~  383 (384)
                       +.++..+++|+.|+|++|++++.....+..+.  .   |+.+.  +.++.+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~  282 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV  282 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence             34445678888888888888876555554432  1   66665  555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.50  E-value=7.8e-15  Score=129.89  Aligned_cols=185  Identities=15%  Similarity=0.140  Sum_probs=105.7

Q ss_pred             CCccEEEcCCCCCcCcccccCc-----cccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhc-----
Q 043452          176 TKLEVLRLTNNSFTGSLQLSNS-----KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSI-----  245 (384)
Q Consensus       176 ~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----  245 (384)
                      ++|+.|++++|.++......+.     ..++|++|++++|.+++.....+...+++|++|++++|.+++.....+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            4555555555555432222222     124666677766666655555555556677777777777664333222     


Q ss_pred             cCCCCCcEEEeecccccccccc---chhccCCcceEEEccCCcccccc----cccccccCCcCeEeCCCCcCCcccchhh
Q 043452          246 SEMKDLRFLDLSRNQFSGELSA---PLLTGCFSLWLLDLSHNSFCGQV----SPKFMNLTQLGWLSLDNNNFSGRISNGF  318 (384)
Q Consensus       246 ~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~  318 (384)
                      ...++|++|++++|.+++....   ..+..+++|++|++++|.+.+..    ...+..+++|++|++++|.+++.....+
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            2356777777777777532221   22345677777888777776543    3445566778888888888764332222


Q ss_pred             ---hhccccceEEEcCCCccccccchhhhccCC-----ccEEE--ccCcccc
Q 043452          319 ---LSSARSLQVLDISNNKLVGQIPSWIGNFSS-----LALLT--VSKNLLE  360 (384)
Q Consensus       319 ---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----L~~L~--l~~~~~~  360 (384)
                         +..+++|++|++++|.+.+....++..+..     |+.+.  +.++.+.
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence               334577888888888887666666654322     55555  5555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=2e-13  Score=108.11  Aligned_cols=134  Identities=24%  Similarity=0.302  Sum_probs=107.4

Q ss_pred             CCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEE
Q 043452          201 FLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLD  280 (384)
Q Consensus       201 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  280 (384)
                      ..+.++++++.+. .++..+   .+++++|++++|.++...+..+..+++|++|++++|.+. ..+...+.++++|++|+
T Consensus         8 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~   82 (177)
T 2o6r_A            8 SGTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILY   82 (177)
T ss_dssp             ETTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEE
Confidence            3577888888877 566443   468999999999988766667788899999999999887 55556667889999999


Q ss_pred             ccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccc
Q 043452          281 LSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIP  340 (384)
Q Consensus       281 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  340 (384)
                      +++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+....+
T Consensus        83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           83 LHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999998777777788899999999999888 5666667778899999999998875443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.50  E-value=8.6e-15  Score=140.97  Aligned_cols=191  Identities=18%  Similarity=0.231  Sum_probs=78.2

Q ss_pred             CCccEEEccCCCCCCccccccccCCCCeEeccC-----CccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCC
Q 043452          128 SQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSH-----NKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFL  202 (384)
Q Consensus       128 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  202 (384)
                      +.++.|++.++.+...+..+....+|..+.+..     +.+  .++...+..+++|+.|++++|.+.. ++..+..+++|
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCSC-CCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCC
Confidence            456666666665555443333333333333322     111  1334444566667777776666653 23333456666


Q ss_pred             ceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEcc
Q 043452          203 HHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLS  282 (384)
Q Consensus       203 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  282 (384)
                      ++|+|++|.+. .++..+. .+++|++|++++|.++ .++..+..+++|++|++++|.+. ..+.. +..+++|++|+++
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~-~~~l~~L~~L~L~  324 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWE-FGNLCNLQFLGVE  324 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSS-TTSCTTCCCEECT
T ss_pred             CEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChh-hhcCCCccEEeCC
Confidence            66666666666 5555443 3666666666666666 44555666666666666666664 33333 4556666666666


Q ss_pred             CCcccccccccccccCC-cCeEeCCCCcCCcccchhhhhccccceEEEcCCC
Q 043452          283 HNSFCGQVSPKFMNLTQ-LGWLSLDNNNFSGRISNGFLSSARSLQVLDISNN  333 (384)
Q Consensus       283 ~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  333 (384)
                      +|.+.+..+..+..... ...+++++|.+++.++       ..|+.|+++.|
T Consensus       325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-------~~l~~l~l~~n  369 (727)
T 4b8c_D          325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-------HERRFIEINTD  369 (727)
T ss_dssp             TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------CC---------
T ss_pred             CCccCCCChHHHhhcchhhhHHhhccCcccCcCc-------cccceeEeecc
Confidence            66666555554433211 1224555555553333       24455555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.49  E-value=2.8e-12  Score=114.45  Aligned_cols=125  Identities=12%  Similarity=0.119  Sum_probs=58.4

Q ss_pred             hhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCch
Q 043452           26 ICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNL  105 (384)
Q Consensus        26 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  105 (384)
                      +....+|+.+.|... ++.+...+|..|.+|+.++++.+ ++.+...+|.++ +|+.+.+..+ ++.. ....+..+ +|
T Consensus        42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I-~~~aF~~~-~L  115 (379)
T 4h09_A           42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKF-GDYVFQGT-DL  115 (379)
T ss_dssp             GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEE-CTTTTTTC-CC
T ss_pred             cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEe-ccceeccC-Cc
Confidence            344556666666543 33345556666777777777643 443555566665 4555555432 2111 11223222 45


Q ss_pred             hhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC-ccccccccCCCCeEeccC
Q 043452          106 EFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSH  160 (384)
Q Consensus       106 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~  160 (384)
                      +.+.+...  .......+|..+ +++.+.+... +.. ....+..+.+++.+.+..
T Consensus       116 ~~i~lp~~--~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~  167 (379)
T 4h09_A          116 DDFEFPGA--TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS  167 (379)
T ss_dssp             SEEECCTT--CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred             ccccCCCc--cccccccccccc-eeeeeeccce-eeccccchhccccccccccccc
Confidence            55444321  122233333333 4444444322 111 223345556666665544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.49  E-value=2.6e-13  Score=108.79  Aligned_cols=127  Identities=28%  Similarity=0.362  Sum_probs=103.5

Q ss_pred             ceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEcc
Q 043452          203 HHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLS  282 (384)
Q Consensus       203 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  282 (384)
                      +.++++++.+. .++..+   .+++++|++++|.++ ..+..+..+++|+.|++++|.+. ......|.++++|++|+++
T Consensus        13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECC
Confidence            57888888877 666544   358999999999888 44577888899999999999887 5555667788999999999


Q ss_pred             CCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccc
Q 043452          283 HNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV  336 (384)
Q Consensus       283 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  336 (384)
                      +|.+....+..|..+++|++|++++|.++ .++...+..+++|+.|++++|.+.
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence            99998888888888899999999999888 666666777889999999988764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=1.2e-15  Score=123.23  Aligned_cols=107  Identities=30%  Similarity=0.292  Sum_probs=49.4

Q ss_pred             ccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeE
Q 043452          224 LQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWL  303 (384)
Q Consensus       224 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  303 (384)
                      +++|++|++++|.+++ .+ .+..+++|+.|++++|.+. ..+ ..+..+++|++|++++|.+.+. + .+..+++|++|
T Consensus        47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~-~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L  120 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIE-NLDAVADTLEELWISYNQIASL-S-GIEKLVNLRVL  120 (198)
T ss_dssp             TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCS-SHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEE
T ss_pred             CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-ccc-chhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEE
Confidence            5566666666665554 22 4455556666666665554 222 1223344555555555544432 1 23444445555


Q ss_pred             eCCCCcCCcccchhhhhccccceEEEcCCCccc
Q 043452          304 SLDNNNFSGRISNGFLSSARSLQVLDISNNKLV  336 (384)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  336 (384)
                      ++++|.+++......+..+++|++|++++|.+.
T Consensus       121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             ECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            555544442111122333444444444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=1.8e-13  Score=108.24  Aligned_cols=130  Identities=22%  Similarity=0.255  Sum_probs=69.1

Q ss_pred             cCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccc
Q 043452          246 SEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSL  325 (384)
Q Consensus       246 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L  325 (384)
                      ..+++|+.|++++|.+. .. ..+....++|++|++++|.+.+.  ..+..+++|++|++++|.++ .+++.++..+++|
T Consensus        16 ~~~~~L~~L~l~~n~l~-~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L   90 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL   90 (176)
T ss_dssp             ECTTSCEEEECTTSCCC-SC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred             CCcCCceEEEeeCCCCc-hh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence            34455666666666554 22 12222233566666666655543  34555566666666666655 3344444555666


Q ss_pred             eEEEcCCCccccccch--hhhccCCccEEEccCccccccccc----ccccCCCCceEeCcCCC
Q 043452          326 QVLDISNNKLVGQIPS--WIGNFSSLALLTVSKNLLEGNIPV----QLKNLEALEILDVSENN  382 (384)
Q Consensus       326 ~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~  382 (384)
                      +.|++++|.+. .+|.  .+..+++|+.|++++|++++ .|.    .+..+++|+.||+++|.
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence            66666666554 3333  45556666666666666553 233    25556666666665554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.46  E-value=2.6e-14  Score=137.69  Aligned_cols=143  Identities=22%  Similarity=0.337  Sum_probs=88.2

Q ss_pred             cccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhcc
Q 043452          193 QLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTG  272 (384)
Q Consensus       193 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  272 (384)
                      +..+..++.|+.|++++|.+. .++..++. +++|++|++++|.++ .++..+..+++|++|++++|.+. ..+.. +.+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~  291 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAE-LGS  291 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSS-GGG
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChh-hcC
Confidence            445566677777777777776 56655553 677777777777777 55566677777777777777776 44333 455


Q ss_pred             CCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccch
Q 043452          273 CFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPS  341 (384)
Q Consensus       273 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  341 (384)
                      +++|++|++++|.+. .+|..+..+++|++|+|++|.+++.++..+.........+++++|.+++..|.
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            777777777777765 44555777777777777777776544443322212223356667766655554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.46  E-value=5.4e-12  Score=112.61  Aligned_cols=307  Identities=11%  Similarity=0.084  Sum_probs=186.3

Q ss_pred             hhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCC
Q 043452           48 QCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPT  127 (384)
Q Consensus        48 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~  127 (384)
                      +++....+|+.+.++.. ++.+...+|.+|.+|+.+.+..+ ++.. ....+..+ +|..+.+.  .........+|..+
T Consensus        40 ~~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~I-g~~aF~~c-~l~~i~~~--~~l~~I~~~aF~~~  113 (379)
T 4h09_A           40 PWYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSI-GDGAFADT-KLQSYTGM--ERVKKFGDYVFQGT  113 (379)
T ss_dssp             TTGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEE-CTTTTTTC-CCCEEEEC--TTCCEECTTTTTTC
T ss_pred             cccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEe-chhhhcCC-CCceEECC--ceeeEeccceeccC
Confidence            45667789999999864 55577889999999999999764 3322 22445555 34444332  22333444455443


Q ss_pred             CCccEEEccCCCCCCcc-ccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcC------------cccc
Q 043452          128 SQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTG------------SLQL  194 (384)
Q Consensus       128 ~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------~~~~  194 (384)
                       +|+.+.+...- ..+. ..+.. .+++.+.+...- + .+....+..+.+++.+.+.......            ....
T Consensus       114 -~L~~i~lp~~~-~~i~~~~F~~-~~l~~~~~~~~v-~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (379)
T 4h09_A          114 -DLDDFEFPGAT-TEIGNYIFYN-SSVKRIVIPKSV-T-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE  188 (379)
T ss_dssp             -CCSEEECCTTC-CEECTTTTTT-CCCCEEEECTTC-C-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred             -CcccccCCCcc-cccccccccc-ceeeeeecccee-e-ccccchhcccccccccccccccceeecccceecccccceec
Confidence             78888876542 2222 22333 356666555431 1 2333335567777777766543221            1111


Q ss_pred             cCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCC
Q 043452          195 SNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCF  274 (384)
Q Consensus       195 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  274 (384)
                      .+..+..+..+.+.....  ......+..+.+++.+.+... +.......+..+..|+.+.+..+ ++ .+....|.++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~  263 (379)
T 4h09_A          189 SYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCT  263 (379)
T ss_dssp             ECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCT
T ss_pred             ccccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceee
Confidence            223334444444433221  122222334667777777543 33344556677788888888765 32 45566677788


Q ss_pred             cceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEc
Q 043452          275 SLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTV  354 (384)
Q Consensus       275 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  354 (384)
                      +|+.+.+..+ +......+|..|.+|+.+.+.++.++ .+...+|..|.+|+.+.+..+ ++.+...+|.+|++|+.+.+
T Consensus       264 ~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          264 ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             hhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            8888887654 44455567778888888888777776 666777888888888888754 55456678888888888888


Q ss_pred             cCcccccccccccccCCCCc
Q 043452          355 SKNLLEGNIPVQLKNLEALE  374 (384)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~L~  374 (384)
                      ..+ ++.+...+|.+|..++
T Consensus       341 p~~-v~~I~~~aF~~c~~~~  359 (379)
T 4h09_A          341 PKS-ITLIESGAFEGSSITK  359 (379)
T ss_dssp             CTT-CCEECTTTTTTSSCCC
T ss_pred             CCc-cCEEchhHhhCCCCCc
Confidence            654 5556667777775443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=1.2e-12  Score=102.74  Aligned_cols=106  Identities=23%  Similarity=0.243  Sum_probs=70.9

Q ss_pred             CcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEc
Q 043452          251 LRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDI  330 (384)
Q Consensus       251 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l  330 (384)
                      .+.++++++.+. ..+..+   .+++++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|+.|++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence            466777777765 344333   356777777777777666666777777777777777776 555555566677777777


Q ss_pred             CCCccccccchhhhccCCccEEEccCccccc
Q 043452          331 SNNKLVGQIPSWIGNFSSLALLTVSKNLLEG  361 (384)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  361 (384)
                      ++|.+.+..+.+|..+++|+.|++++|++..
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            7777765555566777777777777777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=2.9e-14  Score=115.10  Aligned_cols=131  Identities=25%  Similarity=0.256  Sum_probs=91.4

Q ss_pred             hccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccc
Q 043452          244 SISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSAR  323 (384)
Q Consensus       244 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~  323 (384)
                      .+..+++|++|++++|.+.+ .+  .+.++++|++|++++|.+.. .+..+..+++|++|++++|.+++ ++  .+..++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~--~~~~l~  115 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS--GIEKLV  115 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH--HHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC--ccccCC
Confidence            66777888888888887763 33  55667788888888887763 44555566778888888887763 33  255667


Q ss_pred             cceEEEcCCCccccccc-hhhhccCCccEEEccCccccccccc----------ccccCCCCceEeCcCCCC
Q 043452          324 SLQVLDISNNKLVGQIP-SWIGNFSSLALLTVSKNLLEGNIPV----------QLKNLEALEILDVSENNL  383 (384)
Q Consensus       324 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~~~~~~~L~~l~l~~~~~  383 (384)
                      +|+.|++++|.+.+..+ ..+..+++|+.|++++|++.+..|.          .+..+++|+.||  ++++
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence            88888888887774322 4677788888888888887655443          267788888776  5554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=3.3e-12  Score=100.44  Aligned_cols=105  Identities=19%  Similarity=0.228  Sum_probs=72.6

Q ss_pred             cEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcC
Q 043452          252 RFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDIS  331 (384)
Q Consensus       252 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~  331 (384)
                      +.++++++.+. ..+..+   .++|++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|+.|+++
T Consensus        15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence            56777777765 444433   267777777777777766667777777777777777776 4555556666777777777


Q ss_pred             CCccccccchhhhccCCccEEEccCccccc
Q 043452          332 NNKLVGQIPSWIGNFSSLALLTVSKNLLEG  361 (384)
Q Consensus       332 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  361 (384)
                      +|.+.+..+.+|..+++|+.|++++|++..
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            777775555557777777777777777663

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.30  E-value=1.1e-11  Score=97.19  Aligned_cols=106  Identities=26%  Similarity=0.275  Sum_probs=81.6

Q ss_pred             CCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeC
Q 043452          226 KLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSL  305 (384)
Q Consensus       226 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l  305 (384)
                      ..+.++++++.++.. +..+  .+++++|++++|.+. ......+.++++|++|++++|.+....+..|..+++|++|++
T Consensus        10 ~~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            357888888888743 3333  378888999888887 444555677888899999888888777777788888889999


Q ss_pred             CCCcCCcccchhhhhccccceEEEcCCCccc
Q 043452          306 DNNNFSGRISNGFLSSARSLQVLDISNNKLV  336 (384)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  336 (384)
                      ++|.++ .++...+..+++|+.|++++|.+.
T Consensus        86 ~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           86 NDNQLK-SIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence            888887 556566777788889999888775

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.26  E-value=2.1e-11  Score=95.87  Aligned_cols=105  Identities=23%  Similarity=0.289  Sum_probs=84.4

Q ss_pred             CcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCC
Q 043452          227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLD  306 (384)
Q Consensus       227 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  306 (384)
                      -+.++++++.++.. +..+.  ++|+.|++++|.+. ......+.++++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        14 ~~~l~~~~n~l~~i-P~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLASV-PAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCSSC-CSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCCcc-CCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            46889998888743 43332  78999999999987 4445567778999999999999988777677888999999999


Q ss_pred             CCcCCcccchhhhhccccceEEEcCCCccc
Q 043452          307 NNNFSGRISNGFLSSARSLQVLDISNNKLV  336 (384)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  336 (384)
                      +|.++ .++...+..+++|+.|++++|.+.
T Consensus        90 ~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           90 DNHLK-SIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SSCCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence            99988 566666777889999999999876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.18  E-value=1.3e-10  Score=101.93  Aligned_cols=71  Identities=20%  Similarity=0.356  Sum_probs=34.9

Q ss_pred             cCCcCeEeCCCCcCCcccchhhhh--ccccceEEEcCCCccccccchh----hhccCCccEEEccCccccccccccc
Q 043452          297 LTQLGWLSLDNNNFSGRISNGFLS--SARSLQVLDISNNKLVGQIPSW----IGNFSSLALLTVSKNLLEGNIPVQL  367 (384)
Q Consensus       297 ~~~L~~l~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~  367 (384)
                      +++|++|++.+|.+.+.....++.  .+++|++|+++.|.+.+..+.+    +..+++|+.|++++|++++.....+
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l  327 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL  327 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHH
Confidence            455666666655554332222221  2455666666665555432222    2334566666666665554433333

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.14  E-value=2.6e-10  Score=100.06  Aligned_cols=138  Identities=15%  Similarity=0.155  Sum_probs=86.0

Q ss_pred             hhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCccccccccccc--ccCCcCeEeCCCC--cCCcc-----
Q 043452          243 SSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFM--NLTQLGWLSLDNN--NFSGR-----  313 (384)
Q Consensus       243 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~l~l~~~--~~~~~-----  313 (384)
                      ..+..+|+|+.|++.++.-. ..+.  + ..++|+.|++..+.+.......+.  .+++|+.|+|+.+  ...+.     
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            34455666666666665211 1111  1 256677777766665544333333  5677777776421  11101     


Q ss_pred             cchhhh-hccccceEEEcCCCccccccchhhh---ccCCccEEEccCcccccccc----cccccCCCCceEeCcCCCCC
Q 043452          314 ISNGFL-SSARSLQVLDISNNKLVGQIPSWIG---NFSSLALLTVSKNLLEGNIP----VQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       314 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~s  384 (384)
                      +...+. ..+|+|+.|++.+|.+.+..+.++.   .+++|+.|+|+.|.+.+..+    ..+..+++|+.|++++|.|+
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            111111 2468999999999998865555554   58899999999999987543    33456899999999999886

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=2.3e-10  Score=100.74  Aligned_cols=89  Identities=20%  Similarity=0.149  Sum_probs=41.1

Q ss_pred             hccCCcceEEEccC-CcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCC
Q 043452          270 LTGCFSLWLLDLSH-NSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSS  348 (384)
Q Consensus       270 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  348 (384)
                      +..+++|++|++++ |.+....+..|..+++|+.|+|++|.++ .+++..+..+++|+.|+|++|.+....+..+..++ 
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-  104 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-  104 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-
Confidence            33444455555553 4554444444445555555555555544 23333344445555555555554433333333333 


Q ss_pred             ccEEEccCcccc
Q 043452          349 LALLTVSKNLLE  360 (384)
Q Consensus       349 L~~L~l~~~~~~  360 (384)
                      |+.|++.+|++.
T Consensus       105 L~~l~l~~N~~~  116 (347)
T 2ifg_A          105 LQELVLSGNPLH  116 (347)
T ss_dssp             CCEEECCSSCCC
T ss_pred             ceEEEeeCCCcc
Confidence            555555555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.91  E-value=1.1e-09  Score=86.75  Aligned_cols=119  Identities=16%  Similarity=0.052  Sum_probs=67.7

Q ss_pred             chhccCCCCCcEEEeecc-cccccccc---chhccCCcceEEEccCCccccccc----ccccccCCcCeEeCCCCcCCcc
Q 043452          242 SSSISEMKDLRFLDLSRN-QFSGELSA---PLLTGCFSLWLLDLSHNSFCGQVS----PKFMNLTQLGWLSLDNNNFSGR  313 (384)
Q Consensus       242 ~~~~~~~~~L~~L~l~~~-~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~  313 (384)
                      ...+...+.|++|++++| .+.+....   ..+...++|++|++++|.+.+...    ..+...+.|++|++++|.+++.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            344556677777777777 66533222   233445667777777777665432    2333446677777777776643


Q ss_pred             cchh---hhhccccceEEEc--CCCccccc----cchhhhccCCccEEEccCcccc
Q 043452          314 ISNG---FLSSARSLQVLDI--SNNKLVGQ----IPSWIGNFSSLALLTVSKNLLE  360 (384)
Q Consensus       314 ~~~~---~~~~~~~L~~L~l--~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~  360 (384)
                      ....   .+...++|++|++  ++|.+.+.    +..++...++|++|++++|++.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3222   2233456777777  55666543    2334445566777777766664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.90  E-value=9.7e-10  Score=84.81  Aligned_cols=102  Identities=12%  Similarity=0.121  Sum_probs=74.2

Q ss_pred             CcceEEEccCCcccccccccccccCCcCeEeCCCCc-CCcccchhhhh---ccccceEEEcCCC-ccccccchhhhccCC
Q 043452          274 FSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNN-FSGRISNGFLS---SARSLQVLDISNN-KLVGQIPSWIGNFSS  348 (384)
Q Consensus       274 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~---~~~~L~~L~l~~~-~~~~~~~~~~~~~~~  348 (384)
                      ..|++|++++|.+++.....+..|++|+.|++++|. +++.....+..   .+++|++|++++| .+++....++..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            368888888888877777777888889999998885 66444444433   1468999999998 588888888889999


Q ss_pred             ccEEEccCcc-ccccc--cccc-ccCCCCce
Q 043452          349 LALLTVSKNL-LEGNI--PVQL-KNLEALEI  375 (384)
Q Consensus       349 L~~L~l~~~~-~~~~~--~~~~-~~~~~L~~  375 (384)
                      |+.|++++|+ +++..  ...+ ..+|+++.
T Consensus       141 L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          141 LKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             CCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             CCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence            9999999996 54321  1222 35677653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.89  E-value=6.9e-10  Score=85.66  Aligned_cols=85  Identities=6%  Similarity=0.039  Sum_probs=72.9

Q ss_pred             cCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCC-ccccccchhhhcc----CCccEEEccCcc-cccccccccccC
Q 043452          297 LTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNN-KLVGQIPSWIGNF----SSLALLTVSKNL-LEGNIPVQLKNL  370 (384)
Q Consensus       297 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~~~~~  370 (384)
                      -..|+.|++++|.+++..... +..|++|++|++++| .+++.....++.+    ++|+.|+|++|. +++.....+..|
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             CceEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            356999999999988655544 468899999999999 5898888888874    589999999995 888777888999


Q ss_pred             CCCceEeCcCCC
Q 043452          371 EALEILDVSENN  382 (384)
Q Consensus       371 ~~L~~l~l~~~~  382 (384)
                      ++|+.|++++|+
T Consensus       139 ~~L~~L~L~~c~  150 (176)
T 3e4g_A          139 RNLKYLFLSDLP  150 (176)
T ss_dssp             TTCCEEEEESCT
T ss_pred             CCCCEEECCCCC
Confidence            999999999996

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.89  E-value=4.9e-09  Score=92.22  Aligned_cols=102  Identities=23%  Similarity=0.223  Sum_probs=63.7

Q ss_pred             EEeCcCc-ccccccchhhhhccccccEEecCC-CccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECC
Q 043452            9 ALDLSYT-GINGSLENQGICELKNLIELNLEG-NAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLS   86 (384)
Q Consensus         9 ~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~   86 (384)
                      .++++++ .++ .+|.  +..+.+|++|++++ |.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|+|+
T Consensus        12 ~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            3566665 565 5543  66667777777774 66665555667777777777777777776666667777777777777


Q ss_pred             CCccccccccccCCCCCchhhhhhhcccC
Q 043452           87 DNYFQGIFYLSSLGNHSNLEFFMLSLVNN  115 (384)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  115 (384)
                      +|.+++.. ...+..++ |+.|.+..+..
T Consensus        89 ~N~l~~~~-~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           89 FNALESLS-WKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             SSCCSCCC-STTTCSCC-CCEEECCSSCC
T ss_pred             CCccceeC-HHHcccCC-ceEEEeeCCCc
Confidence            77766442 23333333 66666655443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.74  E-value=9.1e-09  Score=81.51  Aligned_cols=113  Identities=10%  Similarity=0.079  Sum_probs=61.8

Q ss_pred             ccCCcEEEccCC-cCCCc----cchhccCCCCCcEEEeecccccccccc---chhccCCcceEEEccCCcccccc----c
Q 043452          224 LQKLVYLDMSKN-KFEGS----ISSSISEMKDLRFLDLSRNQFSGELSA---PLLTGCFSLWLLDLSHNSFCGQV----S  291 (384)
Q Consensus       224 ~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~----~  291 (384)
                      .+.|++|++++| .+.+.    ....+...++|++|++++|.+.+....   ..+...++|++|++++|.+.+..    .
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            456666777666 65532    223344556666777776666533221   22334456666777666666532    3


Q ss_pred             ccccccCCcCeEeC--CCCcCCcccch---hhhhccccceEEEcCCCccc
Q 043452          292 PKFMNLTQLGWLSL--DNNNFSGRISN---GFLSSARSLQVLDISNNKLV  336 (384)
Q Consensus       292 ~~~~~~~~L~~l~l--~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~  336 (384)
                      ..+..++.|++|++  ++|.+++....   ..+...++|++|++++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            34445566667776  55666533222   22333456667777666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.31  E-value=3.3e-07  Score=76.27  Aligned_cols=80  Identities=24%  Similarity=0.272  Sum_probs=41.2

Q ss_pred             ccCCcCeEeCCCCcCCcccc-hhhhhccccceEEEcCCCccccccchhhhccC--CccEEEccCcccccccc-------c
Q 043452          296 NLTQLGWLSLDNNNFSGRIS-NGFLSSARSLQVLDISNNKLVGQIPSWIGNFS--SLALLTVSKNLLEGNIP-------V  365 (384)
Q Consensus       296 ~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~-------~  365 (384)
                      .++.|+.|+|++|.+++... +..+..+++|+.|+|++|.+.+.  ..+..++  +|++|++++|++.+..|       .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            34555556666655553111 12344456666666666665533  2222223  66666666666654322       2


Q ss_pred             ccccCCCCceEe
Q 043452          366 QLKNLEALEILD  377 (384)
Q Consensus       366 ~~~~~~~L~~l~  377 (384)
                      .+..+|+|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            345666766664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.09  E-value=5.9e-06  Score=68.71  Aligned_cols=83  Identities=20%  Similarity=0.198  Sum_probs=55.3

Q ss_pred             ccCCcceEEEccCCcccc--cccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccc-------h
Q 043452          271 TGCFSLWLLDLSHNSFCG--QVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIP-------S  341 (384)
Q Consensus       271 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------~  341 (384)
                      .++++|++|++++|.+.+  ..+..+..+++|+.|+|++|.+.+......+..+ .|++|++++|.+.+..|       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            456778888888887776  3345556778888888888888744222222222 78888888888765333       3


Q ss_pred             hhhccCCccEEEc
Q 043452          342 WIGNFSSLALLTV  354 (384)
Q Consensus       342 ~~~~~~~L~~L~l  354 (384)
                      .+..+++|+.||=
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            4677888887763

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.92  E-value=1.5e-05  Score=62.69  Aligned_cols=117  Identities=14%  Similarity=0.106  Sum_probs=69.3

Q ss_pred             hhccCCCCCcEEEeecc-ccccccc---cchhccCCcceEEEccCCcccccccc----cccccCCcCeEeCCCCcCCccc
Q 043452          243 SSISEMKDLRFLDLSRN-QFSGELS---APLLTGCFSLWLLDLSHNSFCGQVSP----KFMNLTQLGWLSLDNNNFSGRI  314 (384)
Q Consensus       243 ~~~~~~~~L~~L~l~~~-~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~  314 (384)
                      ..+...+.|+.|+++++ .+.+...   .+.+..-..|+.|++++|.+.+....    ++...+.|++|+|++|.|++..
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            34455677888888775 6653322   22334456777888887777764433    3335567777888777776444


Q ss_pred             chhhhh---ccccceEEEcCCC---cccc----ccchhhhccCCccEEEccCccc
Q 043452          315 SNGFLS---SARSLQVLDISNN---KLVG----QIPSWIGNFSSLALLTVSKNLL  359 (384)
Q Consensus       315 ~~~~~~---~~~~L~~L~l~~~---~~~~----~~~~~~~~~~~L~~L~l~~~~~  359 (384)
                      ...+..   ....|++|++++|   .+.+    .+.+++..-++|+.|+++.+.+
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            333322   2346777777754   2332    2345556667777777776654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.83  E-value=1.7e-05  Score=62.42  Aligned_cols=112  Identities=13%  Similarity=0.151  Sum_probs=68.8

Q ss_pred             ccCCcEEEccCC-cCCCc----cchhccCCCCCcEEEeeccccccccc---cchhccCCcceEEEccCCcccccccc---
Q 043452          224 LQKLVYLDMSKN-KFEGS----ISSSISEMKDLRFLDLSRNQFSGELS---APLLTGCFSLWLLDLSHNSFCGQVSP---  292 (384)
Q Consensus       224 ~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~---  292 (384)
                      -+.|++|+++++ .+.+.    +...+.....|+.|++++|.+.+...   .+.+..-+.|++|+++.|.+.+....   
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            356888888775 66542    33445566778888888888764322   23334456788888888888764433   


Q ss_pred             -cccccCCcCeEeCCCC---cCCcccc---hhhhhccccceEEEcCCCcc
Q 043452          293 -KFMNLTQLGWLSLDNN---NFSGRIS---NGFLSSARSLQVLDISNNKL  335 (384)
Q Consensus       293 -~~~~~~~L~~l~l~~~---~~~~~~~---~~~~~~~~~L~~L~l~~~~~  335 (384)
                       ++...+.|++|+++++   .+.+...   ..++...+.|++|+++.+.+
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence             3445567888888754   3332211   12334446788888877654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.74  E-value=0.0025  Score=46.56  Aligned_cols=56  Identities=13%  Similarity=0.237  Sum_probs=35.2

Q ss_pred             eEeCCCCcCC-cccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccc
Q 043452          302 WLSLDNNNFS-GRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLE  360 (384)
Q Consensus       302 ~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  360 (384)
                      .++-++..++ ..++..+   .++|+.|+|++|.++...+++|..+++|+.|+|++|+..
T Consensus        12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666554 1233221   136777777777777555666777777777777777664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.75  E-value=0.017  Score=42.04  Aligned_cols=57  Identities=16%  Similarity=0.309  Sum_probs=37.1

Q ss_pred             cEEecCCCccc-cCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccc
Q 043452           33 IELNLEGNAIE-GPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQ   91 (384)
Q Consensus        33 ~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   91 (384)
                      ..++.++..++ ..+|..+.  ++|++|+|++|.++...+..|..+++|++|+|.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            35666666665 23444332  36778888888777666667777788888888877553

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=91.69  E-value=0.17  Score=34.69  Aligned_cols=48  Identities=6%  Similarity=0.149  Sum_probs=37.7

Q ss_pred             CcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCc
Q 043452          308 NNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN  357 (384)
Q Consensus       308 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  357 (384)
                      ..++ .+....|.+|.+|+++.+..+ ++.+...+|.+|.+|+.+.+.+.
T Consensus         6 ~~vt-~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            6 EPVV-GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCC-SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CccC-EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            3455 566777888999999999874 55577788999999999988775

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=87.09  E-value=0.71  Score=31.54  Aligned_cols=42  Identities=14%  Similarity=0.115  Sum_probs=20.8

Q ss_pred             CCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCC
Q 043452           45 PLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSD   87 (384)
Q Consensus        45 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~   87 (384)
                      +...+|..|.+|+.+.|+.+ ++.+...+|.+|.+|+.+.+..
T Consensus        11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A           11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred             ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence            33445555555555555543 2324444555555555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	384
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	8e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 86.2 bits (212), Expect = 3e-19
 Identities = 68/383 (17%), Positives = 127/383 (33%), Gaps = 50/383 (13%)

Query: 29  LKNLIELNLEGNAIEGPLPQC-LKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSD 87
           L   ++  L    +   + Q  L  +T L+   +    + G     +  L +L  ++ S+
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSN 75

Query: 88  NYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFL 147
           N    I  L +L    ++      + + T      N    +           L       
Sbjct: 76  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 148 QKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGS---------LQLSNSK 198
           + +    ++         +    L   N   ++  L N +                  +K
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 199 LDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSR 258
           L  L  L  ++N  +   P  + T L     L ++ N+ +     +++ + +L  LDL+ 
Sbjct: 196 LTNLESLIATNNQISDITPLGILTNLD---ELSLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 259 NQFSGELSAPLLTGCFSLWLLDLSHNSFCG--------------------QVSPKFMNLT 298
           NQ S       L+G   L  L L  N                        +      NL 
Sbjct: 251 NQISNL---APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK 307

Query: 299 QLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNL 358
            L +L+L  NN S       L+    LQ L  +NNK+     S + N +++  L+   N 
Sbjct: 308 NLTYLTLYFNNISDISPVSSLT---KLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362

Query: 359 LEGNIPVQLKNLEALEILDVSEN 381
           +    P  L NL  +  L +++ 
Sbjct: 363 ISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 64.3 bits (155), Expect = 5e-12
 Identities = 59/357 (16%), Positives = 118/357 (33%), Gaps = 35/357 (9%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
           +    NL  ++ S   +      + + +L +++  N +   I             L    
Sbjct: 62  VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 121

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           I+                     +L++     +   +     +      L  ++   +V 
Sbjct: 122 ITDID---------------PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT 166

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
               L           + N    +  L K  +L+SL  ++N++    P       T L+ 
Sbjct: 167 DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG---ILTNLDE 223

Query: 181 LRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGS 240
           L L  N       L++  L  L  LD+++N  +   P +    L KL  L +  N+    
Sbjct: 224 LSLNGNQLKDIGTLAS--LTNLTDLDLANNQISNLAPLSG---LTKLTELKLGANQISN- 277

Query: 241 ISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQL 300
               IS +  L  L       +       ++   +L  L L  N+          +LT+L
Sbjct: 278 ----ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKL 331

Query: 301 GWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN 357
             L   NN  S   S   L++  ++  L   +N++    P  + N + +  L ++  
Sbjct: 332 QRLFFANNKVSDVSS---LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.6 bits (166), Expect = 1e-13
 Identities = 42/261 (16%), Positives = 88/261 (33%), Gaps = 7/261 (2%)

Query: 52  NLTRLKVFGISSNQLSG--SLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFM 109
              R+    +S   L     +PS +A+L  L +L +            ++   + L +  
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 110 LSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPA 169
           ++  N +  +        + + +    N         +    +L  +    N++ G+ P 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 170 WLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVY 229
                +     + ++ N  TG +  + + L+         +        ++     K   
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL---SRNMLEGDASVLFGSDKNTQ 224

Query: 230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289
                          +   K+L  LDL  N+  G L    LT    L  L++S N+ CG+
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFNNLCGE 283

Query: 290 VSPKFMNLTQLGWLSLDNNNF 310
           + P+  NL +    +  NN  
Sbjct: 284 I-PQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.9 bits (164), Expect = 3e-13
 Identities = 55/267 (20%), Positives = 92/267 (34%), Gaps = 8/267 (2%)

Query: 76  SLTSLQYLDLSDNYFQGIFYL-SSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLH 134
               +  LDLS       + + SSL N   L F  +  +NN +          +QL  L+
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 135 L-RNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQ 193
           +           FL +   L +LD S+N L G+ P   +     L  +    N  +G++ 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIP 166

Query: 194 LSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRF 253
            S      L      S +   RL   +      L    +  ++      +S+    D   
Sbjct: 167 DSYGSFSKLFTSMTISRN---RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 254 LDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGR 313
             +   + S       +    +L  LDL +N   G +      L  L  L++  NN  G 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 314 ISNGFLSSARSLQVLDISNNKLVGQIP 340
           I      + +   V   +NNK +   P
Sbjct: 284 IPQ--GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.5 bits (150), Expect = 1e-11
 Identities = 54/260 (20%), Positives = 99/260 (38%), Gaps = 8/260 (3%)

Query: 127 TSQLKVLHLRNCNLNGTL---GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRL 183
           T ++  L L   NL         L     L  L +     +       +   T+L  L +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 184 TNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISS 243
           T+ + +G++    S++  L  LD S N+ +G LP ++S++   +       N+  G+I  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI-TFDGNRISGAIPD 167

Query: 244 SISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWL 303
           S      L     S       L+  +     +L L  +  +    +     +  +     
Sbjct: 168 SYGSFSKLFT---SMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 304 SLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNI 363
            +     S     G +  +++L  LD+ NN++ G +P  +     L  L VS N L G I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 364 PVQLKNLEALEILDVSENNL 383
           P Q  NL+  ++   + N  
Sbjct: 285 P-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.1 bits (149), Expect = 2e-11
 Identities = 45/262 (17%), Positives = 81/262 (30%), Gaps = 10/262 (3%)

Query: 31  NLIELNLEGNAIEG--PLPQCLKNLTRLKVFGISSN-QLSGSLPSVIASLTSLQYLDLSD 87
            +  L+L G  +    P+P  L NL  L    I     L G +P  IA LT L YL ++ 
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 88  NYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFL 147
               G        +       +    N        +      L  +      ++G +   
Sbjct: 111 TNVSGAIPDFL--SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 148 QKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDI 207
                   L  S           +      L +  +  +        S       +   I
Sbjct: 169 YGSFS--KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 208 SSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSA 267
                +         + + L  LD+  N+  G++   ++++K L  L++S N   GE+  
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-- 284

Query: 268 PLLTGCFSLWLLDLSHNSF-CG 288
           P         +   ++N   CG
Sbjct: 285 PQGGNLQRFDVSAYANNKCLCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 6/234 (2%)

Query: 153 LKSLDLSHNKLVGSFPAWL-LQHNTKLEVLRLTNN-SFTGSLQLSNSKLDFLHHLDISSN 210
           + +LDLS   L   +P    L +   L  L +    +  G +  + +KL  LH+L I+  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 211 SFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLL 270
           + +G    +  + ++ LV LD S N   G++  SIS + +L  +    N+ SG +     
Sbjct: 112 NVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 271 TGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDI 330
           +       + +S N   G++ P F NL         N                    L  
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 331 SNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
           ++            N + L L     N + G +P  L  L+ L  L+VS NNL 
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDL---RNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.0 bits (115), Expect = 4e-07
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 27  CELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLS 86
              KNL  L+L  N I G LPQ L  L  L    +S N L G +P    +L        +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYA 299

Query: 87  DN 88
           +N
Sbjct: 300 NN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 11  DLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSL 70
           DL    I G+L    + +LK L  LN+  N + G +PQ   NL R  V   ++N+     
Sbjct: 250 DLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS 307

Query: 71  P 71
           P
Sbjct: 308 P 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (163), Expect = 4e-13
 Identities = 52/261 (19%), Positives = 84/261 (32%), Gaps = 15/261 (5%)

Query: 30  KNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNY 89
            +   L+L+ N I        KNL  L    + +N++S   P   A L  L+ L LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 90  FQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTL-GFLQ 148
            + +         +  E  +       +     N L    +  L       +G   G  Q
Sbjct: 91  LKEL---PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 149 KQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDIS 208
               L  + ++   +  + P  L      L  L L  N  T     S   L+ L  L +S
Sbjct: 148 GMKKLSYIRIADTNI-TTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 209 SNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSG----- 263
            NS +             L  L ++ NK        +++ K ++ + L  N  S      
Sbjct: 204 FNSISAV-DNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGSND 261

Query: 264 ELSAPLLTGCFSLWLLDLSHN 284
                  T   S   + L  N
Sbjct: 262 FCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.0 bits (136), Expect = 1e-09
 Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 9/233 (3%)

Query: 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS 211
           D   LDL +NK+         ++   L  L L NN  +     + + L  L  L +S N 
Sbjct: 32  DTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 212 FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLT 271
               LP+ M   LQ+L   +    K   S+ + +++M  +            E  A    
Sbjct: 91  LKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA--FQ 147

Query: 272 GCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDIS 331
           G   L  + ++  +          +LT+L    LD N  +   +        +L  L +S
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASL-KGLNNLAKLGLS 203

Query: 332 NNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
            N +       + N   L  L ++ N L   +P  L + + ++++ +  NN+S
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 255

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.4 bits (132), Expect = 3e-09
 Identities = 49/232 (21%), Positives = 85/232 (36%), Gaps = 11/232 (4%)

Query: 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS 211
            L+ +  S   L    P  L        +L L NN  T         L  LH L + +N 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 212 FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLT 271
            +   P   +  L KL  L +SKN+ +         +++LR  +    +    +   L  
Sbjct: 67  ISKISPGAFAP-LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL-- 123

Query: 272 GCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDIS 331
               +  L  +     G  +  F  + +L ++ + + N +  I  G   S   L  L + 
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS---LTELHLD 179

Query: 332 NNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383
            NK+     + +   ++LA L +S N +       L N   L  L ++ N L
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 231

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.4 bits (119), Expect = 1e-07
 Identities = 50/265 (18%), Positives = 86/265 (32%), Gaps = 11/265 (4%)

Query: 109 MLSLVNNTLEVETENWLPT-SQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGS 166
           +L L NN +    +        L  L L N  ++    G       L+ L LS N+L   
Sbjct: 35  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KE 93

Query: 167 FPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQK 226
            P  + +   +L V          S+  +      +  L  +    +G         ++K
Sbjct: 94  LPEKMPKTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSGIENGAFQG-MKK 151

Query: 227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF 286
           L Y+ ++        +        L  L L  N+ +    A  L G  +L  L LS NS 
Sbjct: 152 LSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNSI 207

Query: 287 CGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNF 346
               +    N   L  L L+NN              + +QV+ + NN +     +     
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 347 SSLALLTVSKNLLEGNIPVQLKNLE 371
                      +   + PVQ   ++
Sbjct: 266 GYNTKKASYSGVSLFSNPVQYWEIQ 290

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 5e-05
 Identities = 31/183 (16%), Positives = 57/183 (31%), Gaps = 10/183 (5%)

Query: 202 LHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQF 261
           L  +  S      ++P+++         LD+  NK           +K+L  L L  N+ 
Sbjct: 12  LRVVQCSDLGLE-KVPKDLPPDTA---LLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 262 SGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSS 321
           S  +S         L  L LS N            L +L     +N     R S     +
Sbjct: 68  SK-ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV--HENEITKVRKSVFNGLN 124

Query: 322 ARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSEN 381
              +  L  +  K  G           L+ + ++   +     +      +L  L +  N
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGN 181

Query: 382 NLS 384
            ++
Sbjct: 182 KIT 184

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 10/170 (5%)

Query: 25  GICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLD 84
                  ++EL        G      + + +L    I+   ++     +     SL  L 
Sbjct: 121 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELH 177

Query: 85  LSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTL 144
           L  N    +   +SL   +NL    LS  + +  V+  +   T  L+ LHL N  L    
Sbjct: 178 LDGNKITKVDA-ASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVKVP 235

Query: 145 GFLQKQHDLKSLDLSHNKLVG-----SFPAWLLQHNTKLEVLRLTNNSFT 189
           G L     ++ + L +N +         P            + L +N   
Sbjct: 236 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 3e-12
 Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 29/257 (11%)

Query: 151 HDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSN 210
              + + L  N++    PA   +    L +L L +N        + + L  L  LD+S N
Sbjct: 32  AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 211 SFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLL 270
           +    +       L +L  L + +   +         +  L++L L  N     L     
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTF 149

Query: 271 TGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNN---------------------- 308
               +L  L L  N         F  L  L  L L  N                      
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 309 -NFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQL 367
            N    +    L+  R+LQ L +++N  V    +    ++ L     S + +  ++P +L
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRL 268

Query: 368 KNLEALEILDVSENNLS 384
                 ++  ++ N+L 
Sbjct: 269 AG---RDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 1e-10
 Identities = 51/260 (19%), Positives = 87/260 (33%), Gaps = 9/260 (3%)

Query: 30  KNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNY 89
                + L GN I        +    L +  + SN L+    +    L  L+ LDLSDN 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 90  FQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTL-GFLQ 148
                  ++      L    L       E+    +   + L+ L+L++  L        +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 149 KQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDIS 208
              +L  L L  N++    P    +    L+ L L  N        +   L  L  L + 
Sbjct: 151 DLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 209 SNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAP 268
           +N+ +  LP      L+ L YL ++ N +      +      L+    S ++    L   
Sbjct: 210 ANNLS-ALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQR 267

Query: 269 LLTGCFSLWLLDLSHNSFCG 288
           L        L  L+ N   G
Sbjct: 268 LA----GRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 3e-09
 Identities = 45/273 (16%), Positives = 80/273 (29%), Gaps = 11/273 (4%)

Query: 67  SGSLPSVIASL-TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWL 125
              L +V   +  + Q + L  N    +   +S     NL    L               
Sbjct: 20  QQGLQAVPVGIPAASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLARIDAAAFTG 78

Query: 126 PTSQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLT 184
                ++    N  L             L +L L    L    P    +    L+ L L 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF-RGLAALQYLYLQ 137

Query: 185 NNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSS 244
           +N+       +   L  L HL +  N  +  +P+     L  L  L + +N+       +
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 245 ISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLS 304
             ++  L  L L  N  S  L    L    +L  L L+ N +      + +    L    
Sbjct: 197 FRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFR 254

Query: 305 LDNNNFSGRISNGFLSSARSLQVLDISNNKLVG 337
             ++     +            +  ++ N L G
Sbjct: 255 GSSSEVPCSLPQRL----AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 5e-09
 Identities = 37/190 (19%), Positives = 56/190 (29%), Gaps = 7/190 (3%)

Query: 1   LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFG 60
                 L  L L        L       L  L  L L+ NA++       ++L  L    
Sbjct: 101 FHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159

Query: 61  ISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVE 120
           +  N++S         L SL  L L  N    +               +    NN   + 
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH--PHAFRDLGRLMTLYLFANNLSALP 217

Query: 121 TENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEV 180
           TE   P   L+ L L +               L+    S +++  S P  L       ++
Sbjct: 218 TEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL----AGRDL 273

Query: 181 LRLTNNSFTG 190
            RL  N   G
Sbjct: 274 KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 4e-08
 Identities = 43/231 (18%), Positives = 68/231 (29%), Gaps = 6/231 (2%)

Query: 154 KSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFT 213
            +       L  + P  +       + + L  N  +     S      L  L + SN   
Sbjct: 14  VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA 69

Query: 214 GRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGC 273
                  + +            +      ++   +  L  L L       EL   L  G 
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGL 128

Query: 274 FSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNN 333
            +L  L L  N+        F +L  L  L L  N  S      F     SL  L +  N
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQN 187

Query: 334 KLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS 384
           ++    P    +   L  L +  N L       L  L AL+ L +++N   
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 4e-08
 Identities = 32/197 (16%), Positives = 60/197 (30%), Gaps = 8/197 (4%)

Query: 19  GSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLT 78
            S++      L  L  L+L+   ++   P   + L  L+   +  N L          L 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 79  SLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNC 138
           +L +L L  N    +    +     +L+  +L                   + +    N 
Sbjct: 154 NLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 139 NLNGTLGFLQKQHDLKSLDLSHNKLVGSFP-AWLLQHNTKLEVLRLTNNSFTGSLQLSNS 197
                   L     L+ L L+ N  V       L      L+  R +++    SL    +
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW---LQKFRGSSSEVPCSLPQRLA 269

Query: 198 KLDFLHHLDISSNSFTG 214
             D      +++N   G
Sbjct: 270 GRDL---KRLAANDLQG 283

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 2e-09
 Identities = 41/254 (16%), Positives = 78/254 (30%), Gaps = 35/254 (13%)

Query: 154 KSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFT 213
           ++LDL+   L       LL     +   R   +     L    S    + H+D+S++   
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQG--VIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIE 59

Query: 214 GRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLT-- 271
                 + +   KL  L +   +    I +++++  +L  L+LS      E +   L   
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 272 -----------------------------GCFSLWLLDLSHNSFCGQVSPKFMNLTQLGW 302
                                            L L     N     +S        L  
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 303 LSLDNNNFSGRISNGFLSSARSLQVLDISN-NKLVGQIPSWIGNFSSLALLTVSKNLLEG 361
           L L ++                LQ L +S    ++ +    +G   +L  L V   + +G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 362 NIPVQLKNLEALEI 375
            + +  + L  L+I
Sbjct: 240 TLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 4e-05
 Identities = 45/220 (20%), Positives = 81/220 (36%), Gaps = 11/220 (5%)

Query: 6   NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVF--GISS 63
            ++ +DLS + I  S  +  + +   L  L+LEG  +  P+   L   + L        S
Sbjct: 47  RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 106

Query: 64  NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSL----VNNTLEV 119
                +L ++++S + L  L+LS  +     ++     H +     L+L     N     
Sbjct: 107 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 166

Query: 120 ETENWLPTSQLKVLHLRNCNLNGTLGF--LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTK 177
            +        L  L L +  +     F    + + L+ L LS    +       L     
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 178 LEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLP 217
           L+ L++      G+LQL       L HL I+ + FT    
Sbjct: 227 LKTLQVFGIVPDGTLQLLKEA---LPHLQINCSHFTTIAR 263

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 37/282 (13%), Positives = 76/282 (26%), Gaps = 22/282 (7%)

Query: 35  LNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIF 94
           L+L G  +   +   L +   +  F    + +   L     S   +Q++DLS++  +   
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVST 62

Query: 95  YLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLK 154
               L   S L+   L  +  +  +        S L  L+L  C+               
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC- 120

Query: 155 SLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTG 214
                            L           T      ++   +  +  L+      N    
Sbjct: 121 ---------------SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 165

Query: 215 RLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCF 274
            L   +      +          +        ++  L+ L LSR       +   L    
Sbjct: 166 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225

Query: 275 SLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISN 316
           +L  L +      G +      L     L ++ ++F+     
Sbjct: 226 TLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIARP 264

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 32/206 (15%), Positives = 59/206 (28%), Gaps = 24/206 (11%)

Query: 197 SKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDL 256
           SK+     ++    + T  LP ++         L +S+N       +++     L  L+L
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 257 SRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ-------------------VSPKFMNL 297
            R + +       L    +L L      S                       +    +  
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 298 TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN 357
                      N    +  G L+    L+ L ++NN L       +    +L  L + +N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 358 LLEGNIPVQLKNLEALEILDVSENNL 383
            L   IP        L    +  N  
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 6e-06
 Identities = 44/255 (17%), Positives = 73/255 (28%), Gaps = 42/255 (16%)

Query: 26  ICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDL 85
           + ++ + +E+N +   +    P   K+ T L    +S N L     + +   T L  L+L
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNL 62

Query: 86  SDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLG 145
                  +    +L                         L  +QL+ L L    L     
Sbjct: 63  DRAELTKLQVDGTLPVL------------------GTLDLSHNQLQSLPLLGQTLPALTV 104

Query: 146 FLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHL 205
                + L SL L   + +G      L+ N                L             
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKT------------LPPGLLTPTPKLEK 152

Query: 206 DISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGEL 265
              +N+    LP  +   L+ L  L + +N    +I         L F  L  N      
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN------ 205

Query: 266 SAPLLTGCFSLWLLD 280
             P L  C  L+   
Sbjct: 206 --PWLCNCEILYFRR 218

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 38/242 (15%), Positives = 65/242 (26%), Gaps = 36/242 (14%)

Query: 45  PLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSN 104
           P+ +    +            L+ +LP  +        L LS+N       L++L  ++ 
Sbjct: 2   PICEV-SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFS-LATLMPYTR 56

Query: 105 LEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLV 164
           L                           L+L    L      LQ    L  L        
Sbjct: 57  LT-------------------------QLNLDRAELT----KLQVDGTLPVLGTLDLSHN 87

Query: 165 GSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTIL 224
                 LL        +   + +   SL L   +            +    LP  + T  
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 225 QKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHN 284
            KL  L ++ N      +  ++ +++L  L L  N            G   L    L  N
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGN 205

Query: 285 SF 286
            +
Sbjct: 206 PW 207

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 9e-07
 Identities = 58/349 (16%), Positives = 106/349 (30%), Gaps = 32/349 (9%)

Query: 27  CELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLS 86
           C  +   EL L    +   LP+   +L  L     S N L+  LP       SL+ L + 
Sbjct: 35  CLDRQAHELELNNLGLSS-LPELPPHLESLV---ASCNSLT-ELPE---LPQSLKSLLVD 86

Query: 87  DNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGF 146
           +N  + +  L  L  +  +                       +L+               
Sbjct: 87  NNNLKALSDLPPLLEYLGVSNNQ--------------LEKLPELQNSSFLKIIDVDNNSL 132

Query: 147 LQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLD 206
            +      SL+              LQ+   L  +   NNS      L  S    +   +
Sbjct: 133 KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN 192

Query: 207 ISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELS 266
           I       +    ++TI      L    +      + ++ +       +L ++    ++S
Sbjct: 193 ILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVS 252

Query: 267 APLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQ 326
             + +G   L       N+   ++         L  L++ NN           +    L+
Sbjct: 253 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLE 307

Query: 327 VLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEI 375
            L  S N L  ++P    N   L  L V  N L    P   +++E L +
Sbjct: 308 RLIASFNHL-AEVPELPQN---LKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 54/345 (15%), Positives = 108/345 (31%), Gaps = 33/345 (9%)

Query: 5   KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSN 64
           +    L+L+  G++ SL         +L  L    N++   LP+  ++L  L V      
Sbjct: 38  RQAHELELNNLGLS-SLPE----LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNN--- 88

Query: 65  QLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENW 124
               +L ++      L+YL +S+N  + +          N  F  +  V+N    +  + 
Sbjct: 89  ----NLKALSDLPPLLEYLGVSNNQLEKLPE------LQNSSFLKIIDVDNNSLKKLPDL 138

Query: 125 LPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLT 184
            P+ +              L  L     + + + S  KL     +          +  L 
Sbjct: 139 PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP 198

Query: 185 NNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSS 244
                  L    +  + L  L     S      ++        +   ++      +I S 
Sbjct: 199 ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 258

Query: 245 ISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLS 304
           +SE+    +        S      L     SL  L++S+N      +       +L  L 
Sbjct: 259 LSELPPNLY----YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLI 310

Query: 305 LDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSL 349
              N+ +           ++L+ L +  N L  + P    +   L
Sbjct: 311 ASFNHLA-----EVPELPQNLKQLHVEYNPLR-EFPDIPESVEDL 349

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 2e-06
 Identities = 14/113 (12%), Positives = 35/113 (30%), Gaps = 9/113 (7%)

Query: 6   NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEG----PLPQCLKNLTRLKVFGI 61
           ++++LD+    ++ +   + +  L+    + L+   +       +   L+    L    +
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 62  SSNQLSGSLPSVIASL-----TSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFM 109
            SN+L       +          +Q L L +    G            L    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 115

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 5e-06
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTG----SLQLSNSKLDFLHHLDI 207
           D++SLD+   +L  +  A LL    + +V+RL +   T      +  +      L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 208 SSNSFTGR----LPQNMSTILQKLVYLDMS 233
            SN         + Q + T   K+  L + 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 2e-05
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 8/94 (8%)

Query: 202 LHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEG----SISSSISEMKDLRFLDLS 257
           +  LDI     +      +  +LQ+   + +            ISS++     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 258 RNQFSGE----LSAPLLTGCFSLWLLDLSHNSFC 287
            N+        +   L T    +  L L +    
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 6e-05
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 8/101 (7%)

Query: 250 DLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSF----CGQVSPKFMNLTQLGWLSL 305
           D++ LD+   + S    A LL       ++ L         C  +S        L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 306 DNNNFSGR----ISNGFLSSARSLQVLDISNNKLVGQIPSW 342
            +N         +  G  + +  +Q L + N  L G     
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 103

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 6e-05
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 49  CLKNLTRLKVFGISSNQLSG----SLPSVIASLTSLQYLDLSDNYF--QGIFYLSSLGNH 102
             +  + L+V  ++   +S     SL + + +  SL+ LDLS+N     GI  L      
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 103 SNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLR 136
                  L L +     E E+ L   +     LR
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 10/97 (10%)

Query: 123 NWLPTSQLKVLHLRNCNLNGT-----LGFLQKQHDLKSLDLSHNKL----VGSFPAWLLQ 173
              P S L+VL L +C+++ +        L   H L+ LDLS+N L    +      + Q
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 174 HNTKLEVLRLTNNSFTGSLQLSNSKLDFLH-HLDISS 209
               LE L L +  ++  ++     L+     L + S
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 6e-04
 Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 145 GFLQKQHDLKSLDLSHNKLVGSFPAWL---LQHNTKLEVLRLTNNSFT--GSLQLSNS-- 197
           G  Q    L+ L L+   +  S  + L   L  N  L  L L+NN     G LQL  S  
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 198 -KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLD 231
                L  L +    ++  +   +  + +    L 
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 6e-04
 Identities = 9/90 (10%), Positives = 26/90 (28%), Gaps = 4/90 (4%)

Query: 227 LVYLDMSKNKF-EGSISSSISEMKDLRFLDLSRNQFSGELSAPL---LTGCFSLWLLDLS 282
           +  LD+   +  +   +  +  ++  + + L     +      +   L    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 283 HNSFCGQVSPKFMNLTQLGWLSLDNNNFSG 312
            N          +   Q     +   +   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 11/80 (13%), Positives = 23/80 (28%), Gaps = 8/80 (10%)

Query: 272 GCFSLWLLDLSHNSF----CGQVSPKFMNLTQLGWLSLDNNNFSGR----ISNGFLSSAR 323
               L +L L+        C  ++   +    L  L L NN         +         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 324 SLQVLDISNNKLVGQIPSWI 343
            L+ L + +     ++   +
Sbjct: 427 LLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.003
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 248 MKDLRFLDLSRNQFSGELSAPL---LTGCFSLWLLDLSHNSFCGQVSPKFM-----NLTQ 299
              LR L L+    S    + L   L    SL  LDLS+N        + +         
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 300 LGWLSLDNNNFSGRISNGFLSSARSLQVLDI 330
           L  L L +  +S  + +   +  +    L +
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 0.004
 Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 8/107 (7%)

Query: 273 CFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGF---LSSARSLQVLD 329
              +    L                + L  L L + + S    +     L +  SL+ LD
Sbjct: 344 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 403

Query: 330 ISNNKLVGQIPSWIG-----NFSSLALLTVSKNLLEGNIPVQLKNLE 371
           +SNN L       +          L  L +        +  +L+ LE
Sbjct: 404 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 7e-06
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 7/121 (5%)

Query: 229 YLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCG 288
            L ++      ++   + ++  +  LDLS N+      A  L     L +L  S N+   
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALEN 57

Query: 289 QVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSS 348
                  NL +L  L L NN      +   L S   L +L++  N L           + 
Sbjct: 58  V--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAE 114

Query: 349 L 349
           +
Sbjct: 115 M 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 26/125 (20%), Positives = 40/125 (32%), Gaps = 6/125 (4%)

Query: 81  QYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNL 140
           + L L+         L  L     +    L L +N L            L+VL   +  L
Sbjct: 1   RVLHLAHKDLTV---LCHLEQLLLVTH--LDLSHNRLRALPPALAALRCLEVLQASDNAL 55

Query: 141 NGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLD 200
               G       L+ L L +N+L  S     L    +L +L L  NS      +     +
Sbjct: 56  ENVDGV-ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 201 FLHHL 205
            L  +
Sbjct: 115 MLPSV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.1 bits (80), Expect = 0.003
 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 11/129 (8%)

Query: 57  KVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNT 116
           +V  ++   L+      +  L  + +LDLS N  + +    +L     LE       ++ 
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALP--PALAALRCLEVLQ---ASDN 53

Query: 117 LEVETENWLPTSQLKVLHLRNCNLNG--TLGFLQKQHDLKSLDLSHNKLVG--SFPAWLL 172
                +      +L+ L L N  L     +  L     L  L+L  N L         L 
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113

Query: 173 QHNTKLEVL 181
           +    +  +
Sbjct: 114 EMLPSVSSI 122

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 30/176 (17%), Positives = 56/176 (31%), Gaps = 9/176 (5%)

Query: 62  SSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVET 121
           +   L   +P  I        L L+DN    I      G   +L    L     T     
Sbjct: 16  TGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72

Query: 122 ENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVL 181
                +   ++    N     +       H LK+L+L  N++         +H   L  L
Sbjct: 73  AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLTSL 131

Query: 182 RLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKF 237
            L +N F  +  L     ++L    ++  +     P      ++ +   D+  ++F
Sbjct: 132 NLASNPFNCNCHL-AWFAEWLRKKSLNGGAARCGAPSK----VRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 26/180 (14%), Positives = 59/180 (32%), Gaps = 9/180 (5%)

Query: 204 HLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSG 263
            +D +       +P+++         L ++ N+     S  +            +     
Sbjct: 12  TVDCTGRGLK-EIPRDIPLHTT---ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 264 ELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSAR 323
            +      G   +  L L  N      +  F+ L QL  L+L +N  S  +  G      
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLN 126

Query: 324 SLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL 383
           SL  L++++N               L   +++        P ++++++   I D+  +  
Sbjct: 127 SLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSKVRDVQ---IKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 7e-04
 Identities = 26/184 (14%), Positives = 54/184 (29%), Gaps = 10/184 (5%)

Query: 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS 211
           +  ++D +   L    P  +         L L +N                        +
Sbjct: 9   EGTTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN 64

Query: 212 FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLT 271
               +  N       +  L + +NK +   +     +  L+ L+L  NQ S      ++ 
Sbjct: 65  QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC-----VMP 119

Query: 272 GCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDIS 331
           G F      L+  +          +L          +   G    G  S  R +Q+ D+ 
Sbjct: 120 GSFEHLN-SLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLP 178

Query: 332 NNKL 335
           +++ 
Sbjct: 179 HSEF 182

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 35/217 (16%), Positives = 68/217 (31%), Gaps = 5/217 (2%)

Query: 46  LPQCL-KNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSN 104
           +P  L +N   L+       +L        +    L+ +++S N    +       N   
Sbjct: 23  IPSDLPRNAIELR---FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 105 LEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLV 164
           L    +   NN L +  E +     L+ L + N  +       +     K L    + + 
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 165 GSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLH-HLDISSNSFTGRLPQNMSTI 223
                         E + L  N        + +        L++S N+    LP ++   
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 224 LQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQ 260
               V LD+S+ +     S  +  +K LR       +
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 5e-04
 Identities = 39/223 (17%), Positives = 64/223 (28%), Gaps = 10/223 (4%)

Query: 152 DLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNS 211
           +   L     KL               ++    N+          S L  LH + I   +
Sbjct: 30  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89

Query: 212 FTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLT 271
               +       L  L YL +S    +               LD+  N     +      
Sbjct: 90  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 149

Query: 272 GCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDIS 331
           G     ++   + +   ++     N TQL  L+L +NN    + N     A    +LDIS
Sbjct: 150 GLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 209

Query: 332 NNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALE 374
             ++       + N   L   +             LK L  LE
Sbjct: 210 RTRIHSLPSYGLENLKKLRARSTY----------NLKKLPTLE 242

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 36/233 (15%), Positives = 69/233 (29%), Gaps = 22/233 (9%)

Query: 51  KNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFML 110
             L          + ++ ++    A L  +  L        G+  +  +   +NL    L
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGT---GVTTIEGVQYLNNLIGLEL 70

Query: 111 SLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAW 170
              +N +         T   ++    N   N +     +      L  +    V      
Sbjct: 71  K--DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 171 LLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYL 230
                  L++ ++TN S           L  L +L   S              L KL  L
Sbjct: 129 SNLQVLYLDLNQITNISP----------LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTL 178

Query: 231 DMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSH 283
               NK        ++ + +L  + L  NQ S       L    +L+++ L++
Sbjct: 179 KADDNKISDIS--PLASLPNLIEVHLKNNQISDV---SPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 49  CLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFF 108
            L NL++L       N++S   P  +ASL +L  + L +N    +   S L N SNL   
Sbjct: 168 PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV---SPLANTSNLFIV 222

Query: 109 MLS 111
            L+
Sbjct: 223 TLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 27/220 (12%), Positives = 59/220 (26%), Gaps = 23/220 (10%)

Query: 2   AKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGI 61
               N   +    + +  ++      +L  +  L+  G  +     + ++ L  L    +
Sbjct: 16  PALANAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLEL 70

Query: 62  SSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYL-------------SSLGNHSNLEFF 108
             NQ++   P    +  +   L  +                        +          
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 109 MLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFP 168
           +  L  +  ++   + L                  L  L     L +L    NK+    P
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190

Query: 169 AWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDIS 208
              L     L  + L NN  +    L+N     L  + ++
Sbjct: 191 ---LASLPNLIEVHLKNNQISDVSPLAN--TSNLFIVTLT 225

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 5e-04
 Identities = 46/328 (14%), Positives = 89/328 (27%), Gaps = 23/328 (7%)

Query: 56  LKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYF--QGIFYLSS-LGNHSNLEFFMLSL 112
           LK+  I++     S+ +V+    S++ + LS N    +   +LS  + +  +LE    S 
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 113 VNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLL 172
              T  V+ E       L    L+   L+                L       +    L 
Sbjct: 69  -IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 173 QHNTKLEVLRLTNNSFTGSLQLSNSKLD---FLHHLDISSNSFTGRLPQNMSTILQKLVY 229
            HN  L        +        N K      L  +    N       +  +   Q    
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 230 LDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQ 289
           L   K    G     I  +           +              S   + L       +
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 290 VSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWI-----G 344
           +      L+  G  ++ +                 LQ L +  N++       +      
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKL--------ENIGLQTLRLQYNEIELDAVRTLKTVIDE 299

Query: 345 NFSSLALLTVSKNLL--EGNIPVQLKNL 370
               L  L ++ N    E ++  +++ +
Sbjct: 300 KMPDLLFLELNGNRFSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 6e-04
 Identities = 40/310 (12%), Positives = 79/310 (25%), Gaps = 31/310 (10%)

Query: 5   KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIE-------GPLPQCLKNLTRLK 57
           K+LK   ++            + E  ++ E+ L GN I               K+L   +
Sbjct: 8   KSLKLDAITTEDEKSVFAV--LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 58  VFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTL 117
              I + ++   +P  +  L           +   +   +            LS      
Sbjct: 66  FSDIFTGRVKDEIPEALRLLLQALL-KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 118 EVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTK 177
            +   N     Q      R           +    L+S+    N+L         +    
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 178 LEVLRLTNNSFTGSLQLSNS-----------KLDFLHHLDISSNSFTGRLPQNMSTILQK 226
             +L        G                  +L  L   D +                  
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 227 LVYLDMSKNKFEGSISSSISEM------KDLRFLDLSRNQFSGE----LSAPLLTGCFSL 276
           L  L ++        ++++ +         L+ L L  N+   +    L   +      L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 277 WLLDLSHNSF 286
             L+L+ N F
Sbjct: 305 LFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 39/319 (12%), Positives = 84/319 (26%), Gaps = 21/319 (6%)

Query: 28  ELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSG----SLPSVIASLTSLQYL 83
           E K+L    +     +  +   L     +K   +S N +       L   IAS   L+  
Sbjct: 6   EGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 84  DLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGT 143
           + SD +   +           L+  +     +T+ +    + PT+Q  ++   + +    
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 144 LGFL--QKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDF 201
             +L            ++      +             ++   N    GS++        
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 202 LHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQF 261
              L        G  P+ +  +L + +         +   ++          + L     
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 262 SGELSAPLLTGCFSLWLLDLSHNSFCGQVSP-KFMNLTQLGWLSLDNNNFSGR----ISN 316
                         L    LS       V     +    L  L L  N         +  
Sbjct: 245 ---------LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 295

Query: 317 GFLSSARSLQVLDISNNKL 335
                   L  L+++ N+ 
Sbjct: 296 VIDEKMPDLLFLELNGNRF 314

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 8e-04
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 52  NLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFML 110
           N  R +   +   ++   + ++ A+L     +D SDN    I  L        L+  ++
Sbjct: 16  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE---IRKLDGFPLLRRLKTLLV 70

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 151 HDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSN 210
           + +  +  +++ +        +Q+   +  L L  N  T    L+N  L  L  L +  N
Sbjct: 46  NSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKPLAN--LKNLGWLFLDEN 100

Query: 211 SFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLL 270
                        L+ L       +   G +     E   L    ++       L+    
Sbjct: 101 KVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDT 160

Query: 271 TGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDI 330
                  + D+               LT+L  L L  N+ S   +   L+  ++L VL++
Sbjct: 161 LSLEDNQISDI----------VPLAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVLEL 207

Query: 331 SN 332
            +
Sbjct: 208 FS 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.84
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.82
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.6
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.38
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.14
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.39
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.34
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.12
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.97
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.9

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=9.9e-27  Score=206.94  Aligned_cols=342  Identities=28%  Similarity=0.319  Sum_probs=221.1

Q ss_pred             CccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEE
Q 043452            4 FKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYL   83 (384)
Q Consensus         4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L   83 (384)
                      +.+|++|+++++.++ ++  .++..+++|++|++++|++++ ++ .++++++|++|++++|.+.+..  .++++++|+.+
T Consensus        43 l~~l~~L~l~~~~I~-~l--~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L  115 (384)
T d2omza2          43 LDQVTTLQADRLGIK-SI--DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGL  115 (384)
T ss_dssp             HTTCCEEECCSSCCC-CC--TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             hCCCCEEECCCCCCC-Cc--cccccCCCCCEEeCcCCcCCC-Cc-cccCCccccccccccccccccc--ccccccccccc
Confidence            456777777777665 44  346667777777777777763 33 3667777777777777766332  26677777777


Q ss_pred             ECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCcc
Q 043452           84 DLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKL  163 (384)
Q Consensus        84 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  163 (384)
                      +++++.+++.....   ....+............... .................    ....+.............+..
T Consensus       116 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  187 (384)
T d2omza2         116 TLFNNQITDIDPLK---NLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVT----DLKPLANLTTLERLDISSNKV  187 (384)
T ss_dssp             ECCSSCCCCCGGGT---TCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCC----CCGGGTTCTTCCEEECCSSCC
T ss_pred             cccccccccccccc---cccccccccccccccccccc-ccccccccccccccccc----hhhhhcccccccccccccccc
Confidence            77766655443211   11111111111100000000 00000001111111000    112223333444444444433


Q ss_pred             CCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccch
Q 043452          164 VGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISS  243 (384)
Q Consensus       164 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  243 (384)
                      ...   .....+++++.+.++++.++...+  ...+++|++++++++.+. ..+ . ...+++|+.+++++|.+++..  
T Consensus       188 ~~~---~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-~~~-~-l~~l~~L~~L~l~~n~l~~~~--  257 (384)
T d2omza2         188 SDI---SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIG-T-LASLTNLTDLDLANNQISNLA--  257 (384)
T ss_dssp             CCC---GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG-G-GGGCTTCSEEECCSSCCCCCG--
T ss_pred             ccc---cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-Ccc-h-hhcccccchhccccCccCCCC--
Confidence            211   124577889999999888775543  456688999999999887 333 2 234789999999999988543  


Q ss_pred             hccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccc
Q 043452          244 SISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSAR  323 (384)
Q Consensus       244 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~  323 (384)
                      .+..+++|++++++++.+.+..   .+..++.++.+.+.+|.+.+.  ..+..+++++.+++++|.+++. .+  +..++
T Consensus       258 ~~~~~~~L~~L~l~~~~l~~~~---~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l-~~--l~~l~  329 (384)
T d2omza2         258 PLSGLTKLTELKLGANQISNIS---PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDI-SP--VSSLT  329 (384)
T ss_dssp             GGTTCTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCC-GG--GGGCT
T ss_pred             cccccccCCEeeccCcccCCCC---ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCC-cc--cccCC
Confidence            3677899999999999886322   255688899999999988753  3467889999999999999843 32  67789


Q ss_pred             cceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCC
Q 043452          324 SLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENN  382 (384)
Q Consensus       324 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  382 (384)
                      +|++|++++|.+++ ++ .+.++++|++|++++|++++..|  +.++++|+.|+|++|.
T Consensus       330 ~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         330 KLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             TCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             CCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            99999999999884 33 68999999999999999986554  8899999999999973

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=5.8e-24  Score=188.84  Aligned_cols=322  Identities=23%  Similarity=0.313  Sum_probs=231.3

Q ss_pred             CCCCccccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCc
Q 043452            1 LAKFKNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSL   80 (384)
Q Consensus         1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L   80 (384)
                      ++.+++|++|++++|.++ ++++  ++++++|++|++++|.+.+. + .++.+++|+.|+++++.+++..+  ......+
T Consensus        62 l~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~  134 (384)
T d2omza2          62 VEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDIDP--LKNLTNL  134 (384)
T ss_dssp             GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred             cccCCCCCEEeCcCCcCC-CCcc--ccCCcccccccccccccccc-c-ccccccccccccccccccccccc--ccccccc
Confidence            357899999999999998 6643  89999999999999999853 3 48899999999999988774433  3345566


Q ss_pred             cEEECCCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccC
Q 043452           81 QYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSH  160 (384)
Q Consensus        81 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  160 (384)
                      .......+.+........ .......  ...    ........+...+.........+... .......+++++.+.+++
T Consensus       135 ~~~~~~~~~l~~~~~~~~-~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~l~~  206 (384)
T d2omza2         135 NRLELSSNTISDISALSG-LTSLQQL--SFG----NQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLESLIATN  206 (384)
T ss_dssp             SEEEEEEEEECCCGGGTT-CTTCSEE--EEE----ESCCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCS
T ss_pred             cccccccccccccccccc-ccccccc--ccc----cccchhhhhccccccccccccccccc-cccccccccccceeeccC
Confidence            666666554433321110 0000000  000    00001111222233333333333322 445567788999999999


Q ss_pred             CccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCc
Q 043452          161 NKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGS  240 (384)
Q Consensus       161 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  240 (384)
                      +.+++..+   ...+++|++|+++++.++..  ..+..+++|+.++++++.+.+ .+.  ...+++|++|+++++.++..
T Consensus       207 n~i~~~~~---~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-~~~--~~~~~~L~~L~l~~~~l~~~  278 (384)
T d2omza2         207 NQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNI  278 (384)
T ss_dssp             SCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCCCC
T ss_pred             CccCCCCc---ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCC-CCc--ccccccCCEeeccCcccCCC
Confidence            98874443   35778999999999988754  246778999999999999874 332  23478999999999998754


Q ss_pred             cchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhh
Q 043452          241 ISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLS  320 (384)
Q Consensus       241 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~  320 (384)
                      .  .+..++.++.+.+.+|.+.+   ...+..+++++.|++++|.+.+..  .+..+++|++|++++|.++ .++  .+.
T Consensus       279 ~--~~~~~~~l~~l~~~~n~l~~---~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~-~l~--~l~  348 (384)
T d2omza2         279 S--PLAGLTALTNLELNENQLED---ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS-DVS--SLA  348 (384)
T ss_dssp             G--GGTTCTTCSEEECCSSCCSC---CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC-CCG--GGG
T ss_pred             C--cccccccccccccccccccc---ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC-CCh--hHc
Confidence            3  46778999999999998863   223567899999999999998654  3778999999999999998 343  267


Q ss_pred             ccccceEEEcCCCccccccchhhhccCCccEEEccCc
Q 043452          321 SARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN  357 (384)
Q Consensus       321 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  357 (384)
                      .+++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       349 ~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         349 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            78999999999999986543  889999999999987

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=1.4e-25  Score=193.53  Aligned_cols=249  Identities=27%  Similarity=0.390  Sum_probs=212.3

Q ss_pred             CCccEEEccCCCCCC---ccccccccCCCCeEeccC-CccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCc
Q 043452          128 SQLKVLHLRNCNLNG---TLGFLQKQHDLKSLDLSH-NKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLH  203 (384)
Q Consensus       128 ~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  203 (384)
                      .++++|+++++.+.+   ++..+.++++|++|++++ +.+++.+|..+ +.+++|++|++++|.+....+..+..+++|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc-ccccccchhhhccccccccccccccchhhhc
Confidence            368999999998876   678999999999999987 67887888775 5899999999999999888888888999999


Q ss_pred             eEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCC-cEEEeeccccccccccchhccCCcceEEEcc
Q 043452          204 HLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDL-RFLDLSRNQFSGELSAPLLTGCFSLWLLDLS  282 (384)
Q Consensus       204 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  282 (384)
                      .++++.|.+....+..+.. ++.++.+++++|.+.+..+..+..+..+ +.+.+++|.+.+..+.. +... ....+++.
T Consensus       129 ~l~l~~N~~~~~~p~~l~~-l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~-~~~l-~~~~l~l~  205 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANL-NLAFVDLS  205 (313)
T ss_dssp             EEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGC-CCSEEECC
T ss_pred             ccccccccccccCchhhcc-Ccccceeecccccccccccccccccccccccccccccccccccccc-cccc-cccccccc
Confidence            9999999988777777654 8999999999999987777777777765 88999999988554433 3434 44578999


Q ss_pred             CCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccc
Q 043452          283 HNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGN  362 (384)
Q Consensus       283 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  362 (384)
                      .+...+..+..+..++.++.+++.++.+.+..+  .+..+++|+.|++++|++++.+|..++++++|+.|+|++|++++.
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~--~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~  283 (313)
T d1ogqa_         206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccc--ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccccc
Confidence            998888888888889999999999999875544  255678999999999999999999999999999999999999987


Q ss_pred             cccccccCCCCceEeCcCCCC
Q 043452          363 IPVQLKNLEALEILDVSENNL  383 (384)
Q Consensus       363 ~~~~~~~~~~L~~l~l~~~~~  383 (384)
                      +|. +.++.+|+.+++++|++
T Consensus       284 iP~-~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         284 IPQ-GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CCC-STTGGGSCGGGTCSSSE
T ss_pred             CCC-cccCCCCCHHHhCCCcc
Confidence            874 57899999999999973

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=7.8e-23  Score=175.49  Aligned_cols=223  Identities=23%  Similarity=0.268  Sum_probs=120.9

Q ss_pred             ccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhh
Q 043452           30 KNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFM  109 (384)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~  109 (384)
                      +++++|++++|+++...+.+|..+++|++|+++++.+....|.+|.++++|++|++++|+++                  
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~------------------   92 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK------------------   92 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS------------------
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC------------------
Confidence            34555555555555332334555555555555555555444555555555555555555443                  


Q ss_pred             hhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCc
Q 043452          110 LSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFT  189 (384)
Q Consensus       110 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  189 (384)
                                                      .++..  ..+.++.|.+.++.+. .++...+.....+..+....+...
T Consensus        93 --------------------------------~l~~~--~~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~  137 (305)
T d1xkua_          93 --------------------------------ELPEK--MPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK  137 (305)
T ss_dssp             --------------------------------BCCSS--CCTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCC
T ss_pred             --------------------------------cCccc--hhhhhhhhhccccchh-hhhhhhhhcccccccccccccccc
Confidence                                            33221  2245666666666665 455555556666667766655332


Q ss_pred             --CcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeecccccccccc
Q 043452          190 --GSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSA  267 (384)
Q Consensus       190 --~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  267 (384)
                        ......+..+++|+.++++++.+. .++...   ++++++|+++++......+..+..++.++.|++++|.+. ....
T Consensus       138 ~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~-~~~~  212 (305)
T d1xkua_         138 SSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDN  212 (305)
T ss_dssp             GGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-EECT
T ss_pred             ccCCCccccccccccCccccccCCcc-ccCccc---CCccCEEECCCCcCCCCChhHhhcccccccccccccccc-cccc
Confidence              122334455566666666666655 333322   456666666666665555555566666666666666655 3333


Q ss_pred             chhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCC
Q 043452          268 PLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFS  311 (384)
Q Consensus       268 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  311 (384)
                      ..+.++++|++|++++|.+.. .|..+..+++|++|++++|+++
T Consensus       213 ~~~~~l~~L~~L~L~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         213 GSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCC
T ss_pred             ccccccccceeeecccccccc-cccccccccCCCEEECCCCccC
Confidence            444555666666666665553 2345555556666666665555

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.9e-23  Score=177.32  Aligned_cols=203  Identities=24%  Similarity=0.235  Sum_probs=91.8

Q ss_pred             ccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEcc-CCcCCCccchhccCCCCCcEEEe
Q 043452          178 LEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMS-KNKFEGSISSSISEMKDLRFLDL  256 (384)
Q Consensus       178 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l  256 (384)
                      +++|++++|.++......+..+++|++|+++++.+. .+.......++.++.+.+. .+.+....+..+..+++|++|++
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            444444444444333334444444444444444443 2222222223444444332 22333333344444445555555


Q ss_pred             eccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccc
Q 043452          257 SRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV  336 (384)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  336 (384)
                      ++|.+. ......+..+++|+.+++++|.+....+..+..++.|+.|++++|.++ .+++.++..+++|+.+++++|.++
T Consensus       113 ~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~-~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         113 DRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc-ccchhhhccccccchhhhhhcccc
Confidence            554443 222333333444555555555444444444444445555555555544 333344444455555555555554


Q ss_pred             cccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452          337 GQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL  383 (384)
Q Consensus       337 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  383 (384)
                      +..|.+|.++++|+.|++++|++.+..+..|..+++|+++++++|++
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            44445555555555555555555544444455555555555555443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1.6e-22  Score=173.55  Aligned_cols=246  Identities=19%  Similarity=0.266  Sum_probs=195.0

Q ss_pred             CCccEEEccCCCCCCccc-cccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEe
Q 043452          128 SQLKVLHLRNCNLNGTLG-FLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLD  206 (384)
Q Consensus       128 ~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  206 (384)
                      +++++|+++++.+..++. .+..+++|+.|+++++.+. .++...+..+++|++|++++|.++.....   ..+.+..+.
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~l~~n~l~~l~~~---~~~~l~~L~  106 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEK---MPKTLQELR  106 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCSS---CCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEecccCCccCcCccc---hhhhhhhhh
Confidence            578999999999888764 6888999999999999887 55555567889999999999988754332   345788888


Q ss_pred             eecCccCCCcchhHHHhccCCcEEEccCCcCCC--ccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCC
Q 043452          207 ISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEG--SISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHN  284 (384)
Q Consensus       207 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  284 (384)
                      +..+.+. ...............+....+....  .....+..+++|+.+++++|.+. ..+..   .+++|+.|++.+|
T Consensus       107 ~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~---~~~~L~~L~l~~n  181 (305)
T d1xkua_         107 VHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG---LPPSLTELHLDGN  181 (305)
T ss_dssp             CCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS---CCTTCSEEECTTS
T ss_pred             ccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcc---cCCccCEEECCCC
Confidence            8888887 5666666667778888888765432  33455677889999999999876 33332   2678999999999


Q ss_pred             cccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccc
Q 043452          285 SFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIP  364 (384)
Q Consensus       285 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  364 (384)
                      ......+..+..++.++.|++++|.++ .+....+..+++|++|++++|.++ .+|+++..+++|+.|++++|+++.+..
T Consensus       182 ~~~~~~~~~~~~~~~l~~L~~s~n~l~-~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~  259 (305)
T d1xkua_         182 KITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS  259 (305)
T ss_dssp             CCCEECTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             cCCCCChhHhhcccccccccccccccc-ccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccCh
Confidence            888888888889999999999999988 555667788899999999999888 568889999999999999999887654


Q ss_pred             ccc------ccCCCCceEeCcCCCCC
Q 043452          365 VQL------KNLEALEILDVSENNLS  384 (384)
Q Consensus       365 ~~~------~~~~~L~~l~l~~~~~s  384 (384)
                      ..|      ...++|+.+++++|+++
T Consensus       260 ~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         260 NDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             hhccCcchhcccCCCCEEECCCCcCc
Confidence            444      35678999999999874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.90  E-value=7.3e-24  Score=182.63  Aligned_cols=248  Identities=27%  Similarity=0.410  Sum_probs=148.3

Q ss_pred             ccccEEecCCCcccc--CCchhhhcCCCCCEEEeec-CcccCccCccccCCCCccEEECCCCccccccccccCCCCCchh
Q 043452           30 KNLIELNLEGNAIEG--PLPQCLKNLTRLKVFGISS-NQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLE  106 (384)
Q Consensus        30 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  106 (384)
                      .+++.|+++++.+.+  .+|..++++++|++|++++ +.+.+.+|..+.++++|++|++++|++.+..+           
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~-----------  118 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-----------  118 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-----------
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccc-----------
Confidence            368889999888775  4778899999999999986 67777788889999999999998887765421           


Q ss_pred             hhhhhcccCceeeccCCCCCCCCccEEEccCCCCCC-ccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCC
Q 043452          107 FFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNG-TLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTN  185 (384)
Q Consensus       107 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  185 (384)
                                     ..+..++.|+.++++.+.... ++..+..++.++.++++++.+.+.+|..+              
T Consensus       119 ---------------~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~--------------  169 (313)
T d1ogqa_         119 ---------------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--------------  169 (313)
T ss_dssp             ---------------GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--------------
T ss_pred             ---------------ccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccc--------------
Confidence                           112233445555555444333 34445555555555555555443444333              


Q ss_pred             CCCcCcccccCccccCC-ceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccc
Q 043452          186 NSFTGSLQLSNSKLDFL-HHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGE  264 (384)
Q Consensus       186 ~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  264 (384)
                                 ..+..+ +.++++++++.+..+..+.. + ....+++..+...+..+..+..+++++.+++.++.+.+.
T Consensus       170 -----------~~l~~l~~~l~~~~n~l~~~~~~~~~~-l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~  236 (313)
T d1ogqa_         170 -----------GSFSKLFTSMTISRNRLTGKIPPTFAN-L-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             -----------GCCCTTCCEEECCSSEEEEECCGGGGG-C-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             -----------ccccccccccccccccccccccccccc-c-ccccccccccccccccccccccccccccccccccccccc
Confidence                       323222 44444444444333322221 2 333455555555545555555666666666666666533


Q ss_pred             cccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCc
Q 043452          265 LSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNK  334 (384)
Q Consensus       265 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  334 (384)
                      .+  .+..+++|+.|++++|++++..|..+..+++|++|++++|.++|.++.  +..+++|+.+++++|+
T Consensus       237 ~~--~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~--~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         237 LG--KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             GG--GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC--STTGGGSCGGGTCSSS
T ss_pred             cc--ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC--cccCCCCCHHHhCCCc
Confidence            22  234456666677776666666666666667777777777766655553  2345666666676664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.4e-22  Score=167.40  Aligned_cols=205  Identities=23%  Similarity=0.241  Sum_probs=121.7

Q ss_pred             CCccEEEccCCCCCCcc-ccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcC-CCCCcCcccccCccccCCceE
Q 043452          128 SQLKVLHLRNCNLNGTL-GFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLT-NNSFTGSLQLSNSKLDFLHHL  205 (384)
Q Consensus       128 ~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L  205 (384)
                      +++++|+++++.+..++ ..+..+++|+.|+++++.+. .++...+...+.++.+.+. .+.+....+..++.+++|++|
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccccccccccccchhhcccccCCEE
Confidence            35666666666666544 34666666666666666654 4444444555666666543 334444445556666666666


Q ss_pred             eeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCc
Q 043452          206 DISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNS  285 (384)
Q Consensus       206 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  285 (384)
                      +++++.+. ..........++|+.+++++|.++...+..+..+++|++|++++|.+. ..+...|.++++|+++++++|.
T Consensus       111 ~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~-~l~~~~f~~l~~L~~l~l~~N~  188 (284)
T d1ozna_         111 HLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNR  188 (284)
T ss_dssp             ECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSC
T ss_pred             ecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc-ccchhhhccccccchhhhhhcc
Confidence            66666654 333333334556666666666666555555556666666666666665 3444555566666666666666


Q ss_pred             ccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccc
Q 043452          286 FCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV  336 (384)
Q Consensus       286 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  336 (384)
                      +.+..+..|..+++|++|++++|.+. .++...+..+++|++|++++|.+.
T Consensus       189 l~~i~~~~f~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         189 VAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccChhHhhhhhhcccccccccccc-cccccccccccccCEEEecCCCCC
Confidence            66655666666666666666666665 444455555666666666666554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.8e-21  Score=161.16  Aligned_cols=200  Identities=21%  Similarity=0.258  Sum_probs=99.8

Q ss_pred             ccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCc
Q 043452          149 KQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLV  228 (384)
Q Consensus       149 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  228 (384)
                      +...+.+++.+++.++ .+|..+   .+++++|++++|.++......+..+++|++|++++|.++ .++..  ..+++|+
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~--~~l~~L~   80 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLG   80 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCC
T ss_pred             ccCCCeEEEccCCCCC-eeCcCc---CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc--ccccccc
Confidence            3344555666666665 455322   145666666666665554455555666666666665554 22211  1244555


Q ss_pred             EEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCC
Q 043452          229 YLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNN  308 (384)
Q Consensus       229 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  308 (384)
                      +|++++|+++. .+..+..+++|+.++++                         ++.+....+..+..+.+++++++++|
T Consensus        81 ~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~-------------------------~~~~~~~~~~~~~~l~~l~~L~l~~n  134 (266)
T d1p9ag_          81 TLDLSHNQLQS-LPLLGQTLPALTVLDVS-------------------------FNRLTSLPLGALRGLGELQELYLKGN  134 (266)
T ss_dssp             EEECCSSCCSS-CCCCTTTCTTCCEEECC-------------------------SSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred             ccccccccccc-ccccccccccccccccc-------------------------ccccceeecccccccccccccccccc
Confidence            55555554442 22233444444455444                         44444444444444455555555555


Q ss_pred             cCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCC
Q 043452          309 NFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNL  383 (384)
Q Consensus       309 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  383 (384)
                      .++ .+++..+..++.++.+++++|.+++..+++|..+++|+.|+|++|+++ .+|+.+..+++|+.|+++||+|
T Consensus       135 ~l~-~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         135 ELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccc-eeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            544 333344444455555555555555444444555555555555555554 3444444555555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.9e-23  Score=187.74  Aligned_cols=380  Identities=19%  Similarity=0.144  Sum_probs=223.8

Q ss_pred             ccccEEeCcCcccccccchhhhhccccccEEecCCCcccc----CCchhhhcCCCCCEEEeecCcccCcc----Ccccc-
Q 043452            5 KNLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEG----PLPQCLKNLTRLKVFGISSNQLSGSL----PSVIA-   75 (384)
Q Consensus         5 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~-   75 (384)
                      .+|++|+++.+.+++......+..+++++.|++++|.+++    .+..++..+++|++|++++|.+++..    ...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            4688999999888754335557788999999999998774    23455678899999999998876322    22232 


Q ss_pred             CCCCccEEECCCCccccccc---cccCCCCCchhhhhhhcccCceeec---cCCC-CCCCCccEEEccCCCCCC-----c
Q 043452           76 SLTSLQYLDLSDNYFQGIFY---LSSLGNHSNLEFFMLSLVNNTLEVE---TENW-LPTSQLKVLHLRNCNLNG-----T  143 (384)
Q Consensus        76 ~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~---~~~~-~~~~~L~~L~l~~~~~~~-----~  143 (384)
                      ..++|++|++++|.+++...   ...+..+++|++++++.+.......   ...+ ..................     .
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            34579999999998876532   2346677888888877654322110   0000 111122233333222221     2


Q ss_pred             cccccccCCCCeEeccCCccCCCcH----HHHhhhCCCccEEEcCCCCCcCcc----cccCccccCCceEeeecCccCCC
Q 043452          144 LGFLQKQHDLKSLDLSHNKLVGSFP----AWLLQHNTKLEVLRLTNNSFTGSL----QLSNSKLDFLHHLDISSNSFTGR  215 (384)
Q Consensus       144 ~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~  215 (384)
                      ...+...+.++.+.++++...+...    ............+.+..+......    ...+...+.++.+.+.++.+...
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence            2334455667777777665432111    112222345566777666554221    12233556777888777765432


Q ss_pred             cc----hhHHHhccCCcEEEccCCcCCCcc----chhccCCCCCcEEEeeccccccccccc----hhccCCcceEEEccC
Q 043452          216 LP----QNMSTILQKLVYLDMSKNKFEGSI----SSSISEMKDLRFLDLSRNQFSGELSAP----LLTGCFSLWLLDLSH  283 (384)
Q Consensus       216 ~~----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~L~l~~  283 (384)
                      ..    .........++.+++++|.+....    ...+...+.++.+++++|.+.+.....    .......|+.+++++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~  321 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  321 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence            22    112222456888888887765332    223345677888888888776332222    122345688888888


Q ss_pred             Ccccccccccc----cccCCcCeEeCCCCcCCcccchhhh----hccccceEEEcCCCccccc----cchhhhccCCccE
Q 043452          284 NSFCGQVSPKF----MNLTQLGWLSLDNNNFSGRISNGFL----SSARSLQVLDISNNKLVGQ----IPSWIGNFSSLAL  351 (384)
Q Consensus       284 ~~~~~~~~~~~----~~~~~L~~l~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~  351 (384)
                      +.+.......+    ..+++|++|++++|.+++.....+.    ...+.|++|++++|.+++.    ++.++..+++|++
T Consensus       322 ~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~  401 (460)
T d1z7xw1         322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE  401 (460)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred             cchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCE
Confidence            87765443333    3456788888888877643322222    2345688888888887654    3344556788888


Q ss_pred             EEccCccccccccccc----c-cCCCCceEeCcCCCCC
Q 043452          352 LTVSKNLLEGNIPVQL----K-NLEALEILDVSENNLS  384 (384)
Q Consensus       352 L~l~~~~~~~~~~~~~----~-~~~~L~~l~l~~~~~s  384 (384)
                      |+|++|++++.....+    . +-..|+.++++++.|+
T Consensus       402 L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         402 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             EECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            8888888776444333    2 2336888888888764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1e-20  Score=158.52  Aligned_cols=201  Identities=26%  Similarity=0.277  Sum_probs=165.8

Q ss_pred             CCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceE
Q 043452          126 PTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHL  205 (384)
Q Consensus       126 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  205 (384)
                      +...+.+++.++.++..+|..+.  +++++|++++|.++ .++...+..+++|++|++++|.++...  .+..+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCC-CcCHHHhhccccccccccccccccccc--ccccccccccc
Confidence            34566677888888887776553  57999999999997 677777789999999999999988543  35678999999


Q ss_pred             eeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCc
Q 043452          206 DISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNS  285 (384)
Q Consensus       206 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  285 (384)
                      ++++|++. ..+.. +..+++|+.|+++++.+.......+..+++++++++++|.+. ..+...+..+++++.+++++|.
T Consensus        83 ~Ls~N~l~-~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          83 DLSHNQLQ-SLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             ECCSSCCS-SCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred             cccccccc-ccccc-cccccccccccccccccceeeccccccccccccccccccccc-eeccccccccccchhccccccc
Confidence            99999987 44443 344889999999999998777778888899999999999987 5666777778999999999999


Q ss_pred             ccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccc
Q 043452          286 FCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLV  336 (384)
Q Consensus       286 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  336 (384)
                      ++...+..+..+++|++|++++|.++ .++..++. +++|+.|++++|.+.
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~-~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG-SHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT-TCCCSEEECCSCCBC
T ss_pred             ccccCccccccccccceeecccCCCc-ccChhHCC-CCCCCEEEecCCCCC
Confidence            99888888888999999999999998 67766554 588999999988653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1e-20  Score=159.87  Aligned_cols=225  Identities=19%  Similarity=0.187  Sum_probs=138.4

Q ss_pred             CeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEcc
Q 043452          154 KSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMS  233 (384)
Q Consensus       154 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  233 (384)
                      +.+++++..+.+.....+..  ..+..+.++...+..... ......+|++|+++++.++......++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            45666665544333333322  234455555443332222 222345677778777777655556666677788888888


Q ss_pred             CCcCCCccchhccCCCCCcEEEeeccc-cccccccchhccCCcceEEEccCCc-cccccc-cccc-ccCCcCeEeCCCCc
Q 043452          234 KNKFEGSISSSISEMKDLRFLDLSRNQ-FSGELSAPLLTGCFSLWLLDLSHNS-FCGQVS-PKFM-NLTQLGWLSLDNNN  309 (384)
Q Consensus       234 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~~~-~~~~L~~l~l~~~~  309 (384)
                      +|.+.+.....+..+++|++|++++|. +++.....+..++++|++|++++|. +++... ..+. .++.|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            777766666666777778888887763 4433333445567778888887763 333221 1222 24677788887652


Q ss_pred             --CCcccchhhhhccccceEEEcCCC-ccccccchhhhccCCccEEEccCc-ccccccccccccCCCCceEeCcCC
Q 043452          310 --FSGRISNGFLSSARSLQVLDISNN-KLVGQIPSWIGNFSSLALLTVSKN-LLEGNIPVQLKNLEALEILDVSEN  381 (384)
Q Consensus       310 --~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~l~l~~~  381 (384)
                        +++.....++..+++|++|++++| .+++....++..+++|+.|++++| .+++.....+.++|+|+.|++++|
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              443334445566777888888776 466666777777788888888876 466556666777788888888776

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.3e-21  Score=174.13  Aligned_cols=373  Identities=19%  Similarity=0.151  Sum_probs=241.5

Q ss_pred             CCccccEEeCcCcccccccc----hhhhhccccccEEecCCCccccCCchhhhc-----CCCCCEEEeecCcccCc----
Q 043452            3 KFKNLKALDLSYTGINGSLE----NQGICELKNLIELNLEGNAIEGPLPQCLKN-----LTRLKVFGISSNQLSGS----   69 (384)
Q Consensus         3 ~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~----   69 (384)
                      .++++++|+|++|.++. ..    ...+..+++|++|++++|.+++.....+..     ..+|++|++++|.+++.    
T Consensus        25 ~l~~l~~L~L~~~~i~~-~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~  103 (460)
T d1z7xw1          25 LLQQCQVVRLDDCGLTE-ARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  103 (460)
T ss_dssp             HHTTCSEEEEESSCCCH-HHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCCCEEEeCCCCCCH-HHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccc
Confidence            46889999999998862 21    345678899999999999887432223322     35799999999998743    


Q ss_pred             cCccccCCCCccEEECCCCcccccccccc---CC-CCCchhhhhhhcccCce---eeccCCCCCCCCccEEEccCCCCCC
Q 043452           70 LPSVIASLTSLQYLDLSDNYFQGIFYLSS---LG-NHSNLEFFMLSLVNNTL---EVETENWLPTSQLKVLHLRNCNLNG  142 (384)
Q Consensus        70 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~-~~~~L~~l~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~  142 (384)
                      ++.++..+++|++|++++|.+........   +. .................   ......+...+.++.+.++.+....
T Consensus       104 l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~  183 (460)
T d1z7xw1         104 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE  183 (460)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             ccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccccccc
Confidence            35567889999999999998764321111   00 00011111111000000   0011122344678888888776543


Q ss_pred             -----ccccc-cccCCCCeEeccCCccCCCcH---HHHhhhCCCccEEEcCCCCCcCc-----ccccCccccCCceEeee
Q 043452          143 -----TLGFL-QKQHDLKSLDLSHNKLVGSFP---AWLLQHNTKLEVLRLTNNSFTGS-----LQLSNSKLDFLHHLDIS  208 (384)
Q Consensus       143 -----~~~~~-~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~  208 (384)
                           ....+ ........+...++.......   .......+.++.+.+..+.....     ..........++.++++
T Consensus       184 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~  263 (460)
T d1z7xw1         184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW  263 (460)
T ss_dssp             HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             ccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccc
Confidence                 11112 223456778888776543322   23345678899999998876422     23334456789999999


Q ss_pred             cCccCCCcchhH---HHhccCCcEEEccCCcCCCccchh-----ccCCCCCcEEEeecccccccccc---chhccCCcce
Q 043452          209 SNSFTGRLPQNM---STILQKLVYLDMSKNKFEGSISSS-----ISEMKDLRFLDLSRNQFSGELSA---PLLTGCFSLW  277 (384)
Q Consensus       209 ~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~  277 (384)
                      +|.+........   ....+.++.++++++.+++.....     ......|+.+.+++|.+......   .++..+++|+
T Consensus       264 ~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~  343 (460)
T d1z7xw1         264 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL  343 (460)
T ss_dssp             TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCC
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchh
Confidence            998764433322   234678999999999886432222     12346899999999988744322   2345577999


Q ss_pred             EEEccCCcccccccccc----c-ccCCcCeEeCCCCcCCcccch---hhhhccccceEEEcCCCccccccchhhh-----
Q 043452          278 LLDLSHNSFCGQVSPKF----M-NLTQLGWLSLDNNNFSGRISN---GFLSSARSLQVLDISNNKLVGQIPSWIG-----  344 (384)
Q Consensus       278 ~L~l~~~~~~~~~~~~~----~-~~~~L~~l~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----  344 (384)
                      +|++++|.+.+.....+    . ..+.|++|++++|.+++....   ..+..+++|++|++++|.+++.....+.     
T Consensus       344 ~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~  423 (460)
T d1z7xw1         344 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ  423 (460)
T ss_dssp             EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTS
T ss_pred             hhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHh
Confidence            99999999876433332    2 356799999999999853322   2345578999999999999876555442     


Q ss_pred             ccCCccEEEccCccccccccccc----ccCCCCceE
Q 043452          345 NFSSLALLTVSKNLLEGNIPVQL----KNLEALEIL  376 (384)
Q Consensus       345 ~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~l  376 (384)
                      +...|+.|+++++++.++..+.+    ...|+|+.+
T Consensus       424 ~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             TTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             CCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            34479999999999886554443    456788765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-19  Score=153.40  Aligned_cols=217  Identities=18%  Similarity=0.176  Sum_probs=149.7

Q ss_pred             ccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecC-ccCCCcchhHHHhccCC
Q 043452          149 KQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSN-SFTGRLPQNMSTILQKL  227 (384)
Q Consensus       149 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L  227 (384)
                      ...+|++|+++++.+++.....++..+++|++|.++++.+.+.....+.++++|++|++++| .+++.....+...+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            44578888888887766666677788888888888888777666666777888888888885 45544555667778899


Q ss_pred             cEEEccCCc-CCCcc-chhc-cCCCCCcEEEeeccc--cccccccchhccCCcceEEEccCC-cccccccccccccCCcC
Q 043452          228 VYLDMSKNK-FEGSI-SSSI-SEMKDLRFLDLSRNQ--FSGELSAPLLTGCFSLWLLDLSHN-SFCGQVSPKFMNLTQLG  301 (384)
Q Consensus       228 ~~L~l~~~~-~~~~~-~~~~-~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~  301 (384)
                      ++|++++|. +++.. ...+ ..+++|+.|+++++.  +++.....+..++++|++|++++| .+++.....+..+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            999998874 43221 1222 345789999998763  443344455667889999999886 46666777788888999


Q ss_pred             eEeCCCC-cCCcccchhhhhccccceEEEcCCCccccccchhh-hccCCccEEEccCcccccccccccccC
Q 043452          302 WLSLDNN-NFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWI-GNFSSLALLTVSKNLLEGNIPVQLKNL  370 (384)
Q Consensus       302 ~l~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~  370 (384)
                      +|++++| .+++.... .+..+++|+.|++.+| +.+.....+ ..+++|+   +..+.+++..+..++..
T Consensus       204 ~L~L~~C~~i~~~~l~-~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~~  269 (284)
T d2astb2         204 HLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNK  269 (284)
T ss_dssp             EEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSST
T ss_pred             EEECCCCCCCChHHHH-HHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCCCCccCcc
Confidence            9999987 45533333 3456789999999888 444333333 4566664   45566665555555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=5.4e-18  Score=138.31  Aligned_cols=203  Identities=21%  Similarity=0.278  Sum_probs=137.5

Q ss_pred             EeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCC
Q 043452          156 LDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKN  235 (384)
Q Consensus       156 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  235 (384)
                      ++++...+++...   .+.+.+|+.|++.++.++..  ..+.++++|++|++++|.+.+..+   ...+++++++++++|
T Consensus        24 ~~l~~~~~~d~~~---~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~---l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          24 IAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGN   95 (227)
T ss_dssp             HHTTCSSTTSEEC---HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSC
T ss_pred             HHhCCCCcCCcCC---HHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc---ccccccccccccccc
Confidence            3444455543332   23446677777777766643  346677777777777777663222   234677888888877


Q ss_pred             cCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccc
Q 043452          236 KFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRIS  315 (384)
Q Consensus       236 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~  315 (384)
                      .++..  ..+..+++|+.++++++...+.   ..+...+.+..+.+.++.+....  .+..+++|+.+++++|.+.+. .
T Consensus        96 ~~~~i--~~l~~l~~L~~l~l~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~-~  167 (227)
T d1h6ua2          96 PLKNV--SAIAGLQSIKTLDLTSTQITDV---TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL-T  167 (227)
T ss_dssp             CCSCC--GGGTTCTTCCEEECTTSCCCCC---GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC-G
T ss_pred             ccccc--cccccccccccccccccccccc---chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc-h
Confidence            77643  3466778888888888776522   22344677888888777765432  356778888899888887632 2


Q ss_pred             hhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcC
Q 043452          316 NGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSE  380 (384)
Q Consensus       316 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~  380 (384)
                      .  +..+++|++|++++|.+++. + .++++++|++|++++|++++..  .+.++++|+.|++++
T Consensus       168 ~--l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         168 P--LANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             G--GTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             h--hcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            2  56678899999999888743 3 3788899999999999888544  378899999998874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.8e-19  Score=146.29  Aligned_cols=222  Identities=17%  Similarity=0.135  Sum_probs=149.6

Q ss_pred             CeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEcc
Q 043452          154 KSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMS  233 (384)
Q Consensus       154 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  233 (384)
                      +.+++++..++ .+|..++   +++++|+++++.++.....+|..+++|++|++++|.+...++...+..++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45556555554 5554322   4677777777777655555677777777777777776644444444446777777765


Q ss_pred             C-CcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccC-CcCeEeCCCCcCC
Q 043452          234 K-NKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLT-QLGWLSLDNNNFS  311 (384)
Q Consensus       234 ~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~  311 (384)
                      . +.+....+..+..+++|+++++.++.+........+.....+..+...++.+.......+..++ .++.+++.++.++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            4 4555555666778888888888888876443434444556666666677777665556666553 6778899888887


Q ss_pred             cccchhhhhccccceEE-EcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCC
Q 043452          312 GRISNGFLSSARSLQVL-DISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSEN  381 (384)
Q Consensus       312 ~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  381 (384)
                       .+...++.. +.+.++ .+++|.+++..+.+|.++++|+.|++++|+++...+..|.++++|+.+++.+.
T Consensus       167 -~i~~~~~~~-~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         167 -EIHNCAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             -EECTTTTTT-CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESS
T ss_pred             -ccccccccc-hhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCC
Confidence             555555544 555555 45677787555567889999999999999988666667888888888776653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=3.9e-16  Score=136.01  Aligned_cols=314  Identities=25%  Similarity=0.254  Sum_probs=166.0

Q ss_pred             cccEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEEC
Q 043452            6 NLKALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDL   85 (384)
Q Consensus         6 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l   85 (384)
                      ++++|+|+++.++ .+|.    ..++|++|++++|+++ .+|+.   ..+|+.|+++++.++ .++..   .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence            5677777777765 5542    2467777777777777 45543   346777777777665 22221   135777777


Q ss_pred             CCCccccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCC
Q 043452           86 SDNYFQGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVG  165 (384)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  165 (384)
                      ++|.+...   ..+..+++|+.+++..+.....     ......+..+.+....... ...+..++.++.+.+.++... 
T Consensus       106 ~~n~l~~l---p~~~~l~~L~~L~l~~~~~~~~-----~~~~~~l~~l~~~~~~~~~-~~~l~~l~~l~~L~l~~n~~~-  175 (353)
T d1jl5a_         106 SNNQLEKL---PELQNSSFLKIIDVDNNSLKKL-----PDLPPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLK-  175 (353)
T ss_dssp             CSSCCSSC---CCCTTCTTCCEEECCSSCCSCC-----CCCCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCS-
T ss_pred             cccccccc---cchhhhccceeecccccccccc-----ccccccccchhhccccccc-cccccccccceeccccccccc-
Confidence            77766544   2234555555555543322111     0112334444444333221 223344555555655555443 


Q ss_pred             CcHHHHhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhc
Q 043452          166 SFPAWLLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSI  245 (384)
Q Consensus       166 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  245 (384)
                      ..+.    .....+.+...+..+...  .....++.|+.+.++++... ..+..    .+++..+.+..+.+....    
T Consensus       176 ~~~~----~~~~~~~l~~~~~~~~~~--~~~~~l~~L~~l~l~~n~~~-~~~~~----~~~l~~~~~~~~~~~~~~----  240 (353)
T d1jl5a_         176 KLPD----LPLSLESIVAGNNILEEL--PELQNLPFLTTIYADNNLLK-TLPDL----PPSLEALNVRDNYLTDLP----  240 (353)
T ss_dssp             SCCC----CCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCS-SCCSC----CTTCCEEECCSSCCSCCC----
T ss_pred             cccc----cccccccccccccccccc--cccccccccccccccccccc-ccccc----cccccccccccccccccc----
Confidence            1111    112233444443332211  12344566666666665544 22221    345666666665554221    


Q ss_pred             cCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccc
Q 043452          246 SEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSL  325 (384)
Q Consensus       246 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L  325 (384)
                      ...+.+....+..+...+-     ..-.......++..+.+...    ...+++|++|++++|.++ .++.    .+++|
T Consensus       241 ~~~~~l~~~~~~~~~~~~l-----~~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~----~~~~L  306 (353)
T d1jl5a_         241 ELPQSLTFLDVSENIFSGL-----SELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPA----LPPRL  306 (353)
T ss_dssp             CCCTTCCEEECCSSCCSEE-----SCCCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCC----CCTTC
T ss_pred             ccccccccccccccccccc-----ccccchhcccccccCccccc----cccCCCCCEEECCCCccC-cccc----ccCCC
Confidence            1123445555544433210     00112334455555544422    223578999999999887 4443    35789


Q ss_pred             eEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCc
Q 043452          326 QVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVS  379 (384)
Q Consensus       326 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  379 (384)
                      +.|++++|+++ .+|+   .+++|+.|++++|++. ..|..   ..+|+.|.+.
T Consensus       307 ~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L~-~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         307 ERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPDI---PESVEDLRMN  352 (353)
T ss_dssp             CEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECC
T ss_pred             CEEECCCCcCC-cccc---ccCCCCEEECcCCcCC-CCCcc---ccccCeeECc
Confidence            99999999887 4554   3567999999999987 44542   2357777664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=6.1e-17  Score=131.94  Aligned_cols=189  Identities=20%  Similarity=0.297  Sum_probs=97.2

Q ss_pred             hhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCch
Q 043452           26 ICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNL  105 (384)
Q Consensus        26 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  105 (384)
                      ++++.+|++|++.+|.+.+ + ..+.++++|++|+++++.+++..+  +.+++++++++++++.+++..           
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~-----------  101 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-----------  101 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-----------
T ss_pred             HHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccccc-----------
Confidence            4556666666666666663 3 235666666666666666653322  566666666666666544321           


Q ss_pred             hhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCC
Q 043452          106 EFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTN  185 (384)
Q Consensus       106 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  185 (384)
                                       .+..+++|+.++++.+...... .+...+.++.+.++++.+....+   +..+++|++|.+++
T Consensus       102 -----------------~l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~L~~L~l~~  160 (227)
T d1h6ua2         102 -----------------AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGN  160 (227)
T ss_dssp             -----------------GGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCS
T ss_pred             -----------------cccccccccccccccccccccc-hhccccchhhhhchhhhhchhhh---hccccccccccccc
Confidence                             1233445555555555443322 23444555666665555442222   33555566666665


Q ss_pred             CCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEee
Q 043452          186 NSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLS  257 (384)
Q Consensus       186 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  257 (384)
                      +.+....  .+..+++|++|++++|.+. .++.  ...+++|++|++++|++++..  .+..+++|+.|+++
T Consensus       161 n~~~~~~--~l~~l~~L~~L~Ls~n~l~-~l~~--l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         161 AQVSDLT--PLANLSKLTTLKADDNKIS-DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             SCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             cccccch--hhcccccceecccCCCccC-CChh--hcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            5544222  2444555555555555554 2221  223455555555555554321  24455555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=7e-16  Score=134.36  Aligned_cols=284  Identities=25%  Similarity=0.295  Sum_probs=159.0

Q ss_pred             ccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhh
Q 043452           30 KNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFM  109 (384)
Q Consensus        30 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~  109 (384)
                      .++++|+++++.++ .+|+.   .++|++|+++++.++ .+|..   .++|++|++.++.++...      .+       
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~------~l-------   96 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALS------DL-------   96 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCC------SC-------
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhh------hh-------
Confidence            46999999999998 57754   478999999999988 56654   468999999998776431      11       


Q ss_pred             hhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCc
Q 043452          110 LSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFT  189 (384)
Q Consensus       110 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  189 (384)
                                       .+.|++|+++++.+..++. +..+++|+.+++.++.+. ..+    ...+.+..+.+......
T Consensus        97 -----------------p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~-~~~----~~~~~l~~l~~~~~~~~  153 (353)
T d1jl5a_          97 -----------------PPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLK-KLP----DLPPSLEFIAAGNNQLE  153 (353)
T ss_dssp             -----------------CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCS
T ss_pred             -----------------ccccccccccccccccccc-hhhhccceeecccccccc-ccc----cccccccchhhcccccc
Confidence                             1245666666666555443 345566666666665543 111    12344555555443322


Q ss_pred             CcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccch
Q 043452          190 GSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPL  269 (384)
Q Consensus       190 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  269 (384)
                      .  ...+..++.++.+.+..+... ..+..    ....+.+......+...  .....++.++.+++++|.... .    
T Consensus       154 ~--~~~l~~l~~l~~L~l~~n~~~-~~~~~----~~~~~~l~~~~~~~~~~--~~~~~l~~L~~l~l~~n~~~~-~----  219 (353)
T d1jl5a_         154 E--LPELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILEEL--PELQNLPFLTTIYADNNLLKT-L----  219 (353)
T ss_dssp             S--CCCCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSS-C----
T ss_pred             c--cccccccccceeccccccccc-ccccc----ccccccccccccccccc--ccccccccccccccccccccc-c----
Confidence            1  222344555555655555443 11111    11233344433333211  122344555555555554321 1    


Q ss_pred             hccCCcceEEEccCCcccccccc---------------ccccc-CCcCeEeCCCCcCCcccchhhhhccccceEEEcCCC
Q 043452          270 LTGCFSLWLLDLSHNSFCGQVSP---------------KFMNL-TQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNN  333 (384)
Q Consensus       270 ~~~~~~L~~L~l~~~~~~~~~~~---------------~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  333 (384)
                      .....++..+.+.++.+......               .+..+ ......++..+.+.     .+...+++|++|++++|
T Consensus       220 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-----~~~~~~~~L~~L~Ls~N  294 (353)
T d1jl5a_         220 PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR-----SLCDLPPSLEELNVSNN  294 (353)
T ss_dssp             CSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCS-----EECCCCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccc-----cccccCCCCCEEECCCC
Confidence            11123344444444433221100               00011 12334445444443     12234579999999999


Q ss_pred             ccccccchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452          334 KLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       334 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      .+. .+|+   .+++|+.|++++|++++ .|.   .+++|++|++++|+++
T Consensus       295 ~l~-~lp~---~~~~L~~L~L~~N~L~~-l~~---~~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         295 KLI-ELPA---LPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLR  337 (353)
T ss_dssp             CCS-CCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             ccC-cccc---ccCCCCEEECCCCcCCc-ccc---ccCCCCEEECcCCcCC
Confidence            988 5564   46789999999999984 443   2578999999999985

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.71  E-value=2.2e-17  Score=143.56  Aligned_cols=187  Identities=20%  Similarity=0.199  Sum_probs=80.4

Q ss_pred             CCCCCccEEEccCCCCCC-----ccccccccCCCCeEeccCCccCC---CcH------HHHhhhCCCccEEEcCCCCCcC
Q 043452          125 LPTSQLKVLHLRNCNLNG-----TLGFLQKQHDLKSLDLSHNKLVG---SFP------AWLLQHNTKLEVLRLTNNSFTG  190 (384)
Q Consensus       125 ~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~---~~~------~~~~~~~~~L~~L~l~~~~~~~  190 (384)
                      ....++++|+++++.+..     +...+...++|+.+++.++....   ..+      ...+..+++|+.|++++|.+..
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            334556666666655433     23344555666666665543210   111      1112234556666665555443


Q ss_pred             cc----cccCccccCCceEeeecCccCCCcchhHH------------HhccCCcEEEccCCcCCCcc----chhccCCCC
Q 043452          191 SL----QLSNSKLDFLHHLDISSNSFTGRLPQNMS------------TILQKLVYLDMSKNKFEGSI----SSSISEMKD  250 (384)
Q Consensus       191 ~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~  250 (384)
                      ..    ...+...++|++|++++|.+.......+.            ...+.|+.+.++++.++...    ...+..++.
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~  187 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL  187 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred             ccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhh
Confidence            21    11223445555555555554322111111            11234555555555443221    122233445


Q ss_pred             CcEEEeeccccccccc----cchhccCCcceEEEccCCcccccc----cccccccCCcCeEeCCCCcCC
Q 043452          251 LRFLDLSRNQFSGELS----APLLTGCFSLWLLDLSHNSFCGQV----SPKFMNLTQLGWLSLDNNNFS  311 (384)
Q Consensus       251 L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~  311 (384)
                      ++.|++++|.+.....    ...+..+++|+.|++++|.+++..    ...+..+++|++|++++|.++
T Consensus       188 L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            5555555555442211    122333444555555555443321    122334445555555555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.5e-16  Score=126.36  Aligned_cols=166  Identities=24%  Similarity=0.351  Sum_probs=113.0

Q ss_pred             cccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcce
Q 043452          198 KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLW  277 (384)
Q Consensus       198 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  277 (384)
                      .+.+|++|+++++.+. .... + +.+++|++|++++|++++..  .+..+++|+.|++++|++.+ .+  .+.++++|+
T Consensus        44 ~L~~L~~L~l~~~~i~-~l~~-l-~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~--~l~~l~~L~  115 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIK-SVQG-I-QYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS--SLKDLKKLK  115 (210)
T ss_dssp             HHHTCCEEECTTSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG--GGTTCTTCC
T ss_pred             HhcCccEEECcCCCCC-Cchh-H-hhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc--ccccccccc
Confidence            3455666666666655 2221 2 33667777777777776432  34567777777777777752 22  345677788


Q ss_pred             EEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCc
Q 043452          278 LLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN  357 (384)
Q Consensus       278 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  357 (384)
                      .|++.+|.+...  ..+..++.++.++++++.+++ ..  ....+++|+.+++++|++.+. + .+.++++|+.|++++|
T Consensus       116 ~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~-~~--~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKN  188 (210)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSS
T ss_pred             cccccccccccc--ccccccccccccccccccccc-cc--ccccccccccccccccccccc-c-cccCCCCCCEEECCCC
Confidence            888877776532  346677888888888888763 22  255668888888888888743 3 3778888999999999


Q ss_pred             ccccccccccccCCCCceEeCcC
Q 043452          358 LLEGNIPVQLKNLEALEILDVSE  380 (384)
Q Consensus       358 ~~~~~~~~~~~~~~~L~~l~l~~  380 (384)
                      ++++ ++ .+.++++|+.|+|++
T Consensus       189 ~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         189 HISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             CCCC-Ch-hhcCCCCCCEEEccC
Confidence            8874 33 578888999988874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.4e-17  Score=137.27  Aligned_cols=222  Identities=15%  Similarity=0.064  Sum_probs=106.2

Q ss_pred             cEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCccccccccccCCCCCchhhhhhhc
Q 043452           33 IELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYFQGIFYLSSLGNHSNLEFFMLSL  112 (384)
Q Consensus        33 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~  112 (384)
                      +.++.++..++ .+|..+.  +++++|+++++.++...+.+|.++++|++|++++|.+....+...+..+++++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            45555555555 4444332  35666666666665444445666666666666666554433222223333333222222


Q ss_pred             ccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHHHhhhCCCccEEEcCCCCCcCcc
Q 043452          113 VNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAWLLQHNTKLEVLRLTNNSFTGSL  192 (384)
Q Consensus       113 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  192 (384)
                      ...........                       +..+++|+.+++.++.+....+.........+..+...++.+....
T Consensus        88 ~n~l~~~~~~~-----------------------~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~  144 (242)
T d1xwdc1          88 ANNLLYINPEA-----------------------FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE  144 (242)
T ss_dssp             CTTCCEECTTS-----------------------EECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC
T ss_pred             ccccccccccc-----------------------ccccccccccccchhhhccccccccccccccccccccccccccccc
Confidence            11122222233                       3444444444444444331111111222333333344444444333


Q ss_pred             cccCccc-cCCceEeeecCccCCCcchhHHHhccCCcEE-EccCCcCCCccchhccCCCCCcEEEeeccccccccccchh
Q 043452          193 QLSNSKL-DFLHHLDISSNSFTGRLPQNMSTILQKLVYL-DMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLL  270 (384)
Q Consensus       193 ~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  270 (384)
                      ...+..+ ..++.++++++.+. .+....+. .+++.++ .+.++.++......+..+++|+.|++++|++. ..+...+
T Consensus       145 ~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~  221 (242)
T d1xwdc1         145 RNSFVGLSFESVILWLNKNGIQ-EIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGL  221 (242)
T ss_dssp             TTSSTTSBSSCEEEECCSSCCC-EECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSC
T ss_pred             ccccccccccceeeeccccccc-cccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHH
Confidence            3333333 25566666666655 44433333 2344444 44556666554555667777777777777776 4455555


Q ss_pred             ccCCcceEEEccC
Q 043452          271 TGCFSLWLLDLSH  283 (384)
Q Consensus       271 ~~~~~L~~L~l~~  283 (384)
                      .++++|+.+++.+
T Consensus       222 ~~l~~L~~l~~~~  234 (242)
T d1xwdc1         222 ENLKKLRARSTYN  234 (242)
T ss_dssp             TTCCEEESSSEES
T ss_pred             cCCcccccCcCCC
Confidence            6666666655543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=4.6e-16  Score=123.76  Aligned_cols=162  Identities=27%  Similarity=0.329  Sum_probs=109.0

Q ss_pred             cccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcce
Q 043452          198 KLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLW  277 (384)
Q Consensus       198 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  277 (384)
                      .++++++|+++++.+. .+. .+ +.+++|++|++++|.+++..  .+..+++|++|++++|.+.. ..  .+.++++|+
T Consensus        38 ~l~~l~~L~l~~~~i~-~l~-~l-~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~-~~--~l~~l~~L~  109 (199)
T d2omxa2          38 DLDQVTTLQADRLGIK-SID-GV-EYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT--PLANLTNLT  109 (199)
T ss_dssp             HHTTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG--GGTTCTTCS
T ss_pred             HhcCCCEEECCCCCCC-Ccc-cc-ccCCCcCcCccccccccCcc--cccCCccccccccccccccc-cc--ccccccccc
Confidence            3455666666666554 221 12 23667777777777776443  26677777888877777652 21  255677788


Q ss_pred             EEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCc
Q 043452          278 LLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKN  357 (384)
Q Consensus       278 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  357 (384)
                      .++++++.....  ..+..+++|+.+++++|.+. .++  .+..+++++.|++.+|.+++.  ..+.++++|+.|++++|
T Consensus       110 ~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~--~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         110 GLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS--ALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSN  182 (199)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred             cccccccccccc--cccchhhhhHHhhhhhhhhc-ccc--cccccccccccccccccccCC--ccccCCCCCCEEECCCC
Confidence            888877766543  23567788888888888876 333  255678888888888888743  34778888999999998


Q ss_pred             ccccccccccccCCCCceE
Q 043452          358 LLEGNIPVQLKNLEALEIL  376 (384)
Q Consensus       358 ~~~~~~~~~~~~~~~L~~l  376 (384)
                      ++++.  ..+.++++|+.|
T Consensus       183 ~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         183 KVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             CCCCC--GGGGGCTTCSEE
T ss_pred             CCCCC--ccccCCCCCCcC
Confidence            88753  357788888875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1e-15  Score=121.66  Aligned_cols=164  Identities=26%  Similarity=0.322  Sum_probs=130.6

Q ss_pred             eEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccC
Q 043452          204 HLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSH  283 (384)
Q Consensus       204 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  283 (384)
                      ...++.+.+++....   ..++++++|+++++.+++.  ..++.+++|++|++++|++++..   .++++++|++|++++
T Consensus        22 ~~~l~~~~~~~~~~~---~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~---~l~~l~~L~~L~l~~   93 (199)
T d2omxa2          22 KTVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNN   93 (199)
T ss_dssp             HHHTTCSSTTSEECH---HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCS
T ss_pred             HHHhCCCCCCCccCH---HHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc---cccCCcccccccccc
Confidence            344555555533322   2367999999999999854  45788999999999999987432   267899999999999


Q ss_pred             CcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccccc
Q 043452          284 NSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNI  363 (384)
Q Consensus       284 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  363 (384)
                      |.+....  .+..++.|+.++++++.... ..  .+..+++|+.|++++|.+.. + +.+..+++|+.|++.+|++++. 
T Consensus        94 n~~~~~~--~l~~l~~L~~L~l~~~~~~~-~~--~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-  165 (199)
T d2omxa2          94 NQIADIT--PLANLTNLTGLTLFNNQITD-ID--PLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-  165 (199)
T ss_dssp             SCCCCCG--GGTTCTTCSEEECCSSCCCC-CG--GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-
T ss_pred             ccccccc--cccccccccccccccccccc-cc--ccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-
Confidence            9887543  47789999999999998763 22  25667999999999999873 3 4688999999999999999854 


Q ss_pred             ccccccCCCCceEeCcCCCCC
Q 043452          364 PVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       364 ~~~~~~~~~L~~l~l~~~~~s  384 (384)
                       ..+.++++|+.|++++|+++
T Consensus       166 -~~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         166 -KPLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             -GGGTTCTTCCEEECCSSCCC
T ss_pred             -ccccCCCCCCEEECCCCCCC
Confidence             35889999999999999985

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.5e-15  Score=121.77  Aligned_cols=179  Identities=23%  Similarity=0.303  Sum_probs=112.9

Q ss_pred             eCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCCCcc
Q 043452           11 DLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSDNYF   90 (384)
Q Consensus        11 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   90 (384)
                      .+....+++.+.   ..++.+|++|+++++.+.+ ++ .+..+++|++|++++|.+++..  .++.+++|++|++++|++
T Consensus        30 ~l~~~~~~~~~~---~~~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          30 NLKKKSVTDAVT---QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HTTCSCTTSEEC---HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             HhCcCccCCccC---HHHhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccc
Confidence            344444543332   2456788899999888874 33 3778889999999998887533  367888999999988877


Q ss_pred             ccccccccCCCCCchhhhhhhcccCceeeccCCCCCCCCccEEEccCCCCCCccccccccCCCCeEeccCCccCCCcHHH
Q 043452           91 QGIFYLSSLGNHSNLEFFMLSLVNNTLEVETENWLPTSQLKVLHLRNCNLNGTLGFLQKQHDLKSLDLSHNKLVGSFPAW  170 (384)
Q Consensus        91 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  170 (384)
                      ++..   .                         +..+++|+.++++++....+. .+..+++++.++++++.+++ .+. 
T Consensus       103 ~~l~---~-------------------------l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~-~~~-  151 (210)
T d1h6ta2         103 KDLS---S-------------------------LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-ITV-  151 (210)
T ss_dssp             CCGG---G-------------------------GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC-CGG-
T ss_pred             cccc---c-------------------------ccccccccccccccccccccc-cccccccccccccccccccc-ccc-
Confidence            6531   1                         334456666666666554432 35566667777776666652 221 


Q ss_pred             HhhhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEcc
Q 043452          171 LLQHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMS  233 (384)
Q Consensus       171 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  233 (384)
                       ...+++|++++++++.+.+..  .+..+++|++|++++|.++ .++ .+ ..+++|++|+++
T Consensus       152 -~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~-~l~-~l-~~l~~L~~L~Ls  208 (210)
T d1h6ta2         152 -LSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS-DLR-AL-AGLKNLDVLELF  208 (210)
T ss_dssp             -GGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-BCG-GG-TTCTTCSEEEEE
T ss_pred             -ccccccccccccccccccccc--cccCCCCCCEEECCCCCCC-CCh-hh-cCCCCCCEEEcc
Confidence             345667777777776665432  2556677777777777665 333 22 336677777664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.66  E-value=1.5e-16  Score=138.23  Aligned_cols=242  Identities=18%  Similarity=0.194  Sum_probs=165.5

Q ss_pred             ccccccccCCCCeEeccCCccCCCcHHHH---hhhCCCccEEEcCCCCCcCc----------ccccCccccCCceEeeec
Q 043452          143 TLGFLQKQHDLKSLDLSHNKLVGSFPAWL---LQHNTKLEVLRLTNNSFTGS----------LQLSNSKLDFLHHLDISS  209 (384)
Q Consensus       143 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~----------~~~~~~~~~~L~~L~l~~  209 (384)
                      +...+.....++.|++++|.+.++....+   +...++|+.+.++.+.....          ....+..+++|++|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            45566777889999999988765544443   34557889999887643311          223345678899999999


Q ss_pred             CccCCCcchhHH---HhccCCcEEEccCCcCCCccch-------------hccCCCCCcEEEeecccccccccc---chh
Q 043452          210 NSFTGRLPQNMS---TILQKLVYLDMSKNKFEGSISS-------------SISEMKDLRFLDLSRNQFSGELSA---PLL  270 (384)
Q Consensus       210 ~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~~~~~~~~~~---~~~  270 (384)
                      |.++......+.   ..+++|++|++++|.+......             .....+.|+.+.++++.+......   ..+
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            988755444433   3467899999998876432110             113467889999998887633322   234


Q ss_pred             ccCCcceEEEccCCccccc-----ccccccccCCcCeEeCCCCcCCcccch---hhhhccccceEEEcCCCccccccchh
Q 043452          271 TGCFSLWLLDLSHNSFCGQ-----VSPKFMNLTQLGWLSLDNNNFSGRISN---GFLSSARSLQVLDISNNKLVGQIPSW  342 (384)
Q Consensus       271 ~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~  342 (384)
                      ..++.|++|++++|.+.+.     ....+..+++|+.|++++|.++.....   ..+..+++|++|++++|.+.+.....
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            5578899999999988753     233466788899999999887643322   23456788999999999887654444


Q ss_pred             h----hc--cCCccEEEccCccccccc----ccccc-cCCCCceEeCcCCCCC
Q 043452          343 I----GN--FSSLALLTVSKNLLEGNI----PVQLK-NLEALEILDVSENNLS  384 (384)
Q Consensus       343 ~----~~--~~~L~~L~l~~~~~~~~~----~~~~~-~~~~L~~l~l~~~~~s  384 (384)
                      +    ..  .+.|+.|++++|++++..    ...+. ++++|++|+|++|.|+
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            3    33  357999999999887643    33332 5788999999999874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=4.4e-16  Score=123.07  Aligned_cols=129  Identities=20%  Similarity=0.264  Sum_probs=73.0

Q ss_pred             cEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCcEEEeec
Q 043452          179 EVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLRFLDLSR  258 (384)
Q Consensus       179 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  258 (384)
                      +.++.++++++.... .+  .+++++|++++|.++.......+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus        11 ~~v~Cs~~~L~~iP~-~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPR-DI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCS-CC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcCccCC-CC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            455555555553222 21  245666666666665334444444456666666666666655555555566666666666


Q ss_pred             cccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCC
Q 043452          259 NQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFS  311 (384)
Q Consensus       259 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  311 (384)
                      |++. ..+...|.++++|++|++++|.+....+.+|..+++|+++++++|.+.
T Consensus        88 N~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccc-ccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            6655 444445555666666666666666555555556666666666666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=1.8e-15  Score=119.54  Aligned_cols=131  Identities=21%  Similarity=0.260  Sum_probs=101.8

Q ss_pred             CcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCC
Q 043452          227 LVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLD  306 (384)
Q Consensus       227 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  306 (384)
                      .+.++.++++++. .|..+.  +++++|++++|.++.......|.++++|++|++++|.+....+..+..++.|++|+++
T Consensus        10 ~~~v~Cs~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCc-cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            4577888877773 343332  6788888888888755666777778888888888888887777788888888888888


Q ss_pred             CCcCCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCccccc
Q 043452          307 NNNFSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEG  361 (384)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  361 (384)
                      +|.++ .+++.+|.++++|++|++++|.++...+++|..+++|+.|+|++|++..
T Consensus        87 ~N~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          87 ENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccccc-ccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            88887 6666667777888888888888887777788888888888888888764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.1e-15  Score=115.04  Aligned_cols=127  Identities=23%  Similarity=0.230  Sum_probs=81.7

Q ss_pred             cCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccc
Q 043452          246 SEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSL  325 (384)
Q Consensus       246 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L  325 (384)
                      .++.++++|++++|+++ ..+ ..+..+++|+.|++++|.+...  +.+..+++|++|++++|.++ .+++.++..+++|
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~-~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L   89 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL   89 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred             cCcCcCcEEECCCCCCC-ccC-ccccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCcccccccccc
Confidence            44556677777777665 222 3345566777777777766643  23566777777777777776 4555556666777


Q ss_pred             eEEEcCCCcccccc-chhhhccCCccEEEccCccccccc---ccccccCCCCceEe
Q 043452          326 QVLDISNNKLVGQI-PSWIGNFSSLALLTVSKNLLEGNI---PVQLKNLEALEILD  377 (384)
Q Consensus       326 ~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~l~  377 (384)
                      ++|++++|.+.+.. ...+..+++|+.|++++|++++..   +..+..+|+|+.||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            77777777776332 245677777888888887776432   12466777777775

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=9.3e-14  Score=105.77  Aligned_cols=124  Identities=21%  Similarity=0.120  Sum_probs=70.2

Q ss_pred             CCcEEEccCCcCCCccchhccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeC
Q 043452          226 KLVYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSL  305 (384)
Q Consensus       226 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l  305 (384)
                      .+++|++++|+++.. +..+..+++|+.|++++|.+. ..  ..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus        19 ~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          19 RDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             SCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcEEECCCCCCCcc-CccccccccCCEEECCCCCCC-cc--CCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            455566666655533 233344556666666666654 21  22445666666666666665544444555666777777


Q ss_pred             CCCcCCcccchhhhhccccceEEEcCCCcccccc---chhhhccCCccEEE
Q 043452          306 DNNNFSGRISNGFLSSARSLQVLDISNNKLVGQI---PSWIGNFSSLALLT  353 (384)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~  353 (384)
                      ++|.+++......+..+++|+++++++|.+++..   +..+..+++|+.||
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            7766653222233555677777777777665321   23466677777766

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=2.3e-13  Score=98.47  Aligned_cols=80  Identities=30%  Similarity=0.371  Sum_probs=62.6

Q ss_pred             cEEeCcCcccccccchhhhhccccccEEecCCCccccCCchhhhcCCCCCEEEeecCcccCccCccccCCCCccEEECCC
Q 043452            8 KALDLSYTGINGSLENQGICELKNLIELNLEGNAIEGPLPQCLKNLTRLKVFGISSNQLSGSLPSVIASLTSLQYLDLSD   87 (384)
Q Consensus         8 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~   87 (384)
                      |+|+++++.++ +++  .+..+++|++|++++|++. .+|..++.+++|++|++++|.++. .+ .+.++++|+++++++
T Consensus         1 R~L~Ls~n~l~-~l~--~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc--ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCC
Confidence            57888888887 553  3788888888888888887 567778888888888888888874 33 477888888888888


Q ss_pred             Cccccc
Q 043452           88 NYFQGI   93 (384)
Q Consensus        88 ~~~~~~   93 (384)
                      |++++.
T Consensus        75 N~i~~~   80 (124)
T d1dcea3          75 NRLQQS   80 (124)
T ss_dssp             SCCCSS
T ss_pred             CccCCC
Confidence            876644

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=4.2e-13  Score=97.05  Aligned_cols=118  Identities=24%  Similarity=0.282  Sum_probs=72.3

Q ss_pred             cEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhccccceEEEcC
Q 043452          252 RFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARSLQVLDIS  331 (384)
Q Consensus       252 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~  331 (384)
                      |+|++++|+++ ...  .+..+++|++|++++|.+.+ .|..+..+++|++|++++|.++ .++.  +..+++|+.|+++
T Consensus         1 R~L~Ls~n~l~-~l~--~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~-~l~~--~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC--HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCS-SCC--CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECC
T ss_pred             CEEEcCCCCCC-CCc--ccccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccc-ccCc--cccccccCeEECC
Confidence            35666666665 221  24456666666666666653 3445666777777777777776 3332  4556777777777


Q ss_pred             CCcccccc-chhhhccCCccEEEccCcccccc---cccccccCCCCceE
Q 043452          332 NNKLVGQI-PSWIGNFSSLALLTVSKNLLEGN---IPVQLKNLEALEIL  376 (384)
Q Consensus       332 ~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~l  376 (384)
                      +|.+.+.. .+.+..+++|+.|++++|++++.   ....+..+|+|+.+
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            77776432 24567777777777777777642   12224457777765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.38  E-value=3e-14  Score=112.49  Aligned_cols=126  Identities=26%  Similarity=0.259  Sum_probs=59.5

Q ss_pred             ccCCCCCcEEEeeccccccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCCCCcCCcccchhhhhcccc
Q 043452          245 ISEMKDLRFLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLDNNNFSGRISNGFLSSARS  324 (384)
Q Consensus       245 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~  324 (384)
                      +..+++|++|++++|.+. ...  .+.++++|++|++++|.+.+. +.....++.|++|++++|.++ .++  .+..+++
T Consensus        44 l~~L~~L~~L~Ls~n~I~-~i~--~l~~l~~L~~L~Ls~N~i~~i-~~~~~~~~~L~~L~l~~N~i~-~l~--~~~~l~~  116 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIA-SLS--GIEKLVN  116 (198)
T ss_dssp             HHHTTTCCEEECSEEEES-CCC--CHHHHTTCCEEECCEEEECSC-SSHHHHHHHCCEEECSEEECC-CHH--HHHHHHH
T ss_pred             HhcccccceeECcccCCC-Ccc--cccCCccccChhhcccccccc-ccccccccccccccccccccc-ccc--ccccccc
Confidence            333444444444444443 111  133344444444444444321 222222344556666666554 222  1344456


Q ss_pred             ceEEEcCCCcccccc-chhhhccCCccEEEccCcccccccccc----------cccCCCCceEe
Q 043452          325 LQVLDISNNKLVGQI-PSWIGNFSSLALLTVSKNLLEGNIPVQ----------LKNLEALEILD  377 (384)
Q Consensus       325 L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~----------~~~~~~L~~l~  377 (384)
                      |+.|++++|.+.+.. ...+..+++|+.|++++|++....+..          +..+|+|+.||
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            666666666655321 134556666666666666655332221          44566666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.9e-11  Score=92.12  Aligned_cols=88  Identities=23%  Similarity=0.128  Sum_probs=40.7

Q ss_pred             ccccCCcCeEeCCCCc-CCcccchhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccccccccCCC
Q 043452          294 FMNLTQLGWLSLDNNN-FSGRISNGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEA  372 (384)
Q Consensus       294 ~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  372 (384)
                      +..+++|++|++.++. ++ .++...|..+++|+.|++++|.++...+.+|.++++|+.|+|++|+++...+..|. ..+
T Consensus        27 l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~~~  104 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-GLS  104 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC-SCC
T ss_pred             ccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhc-ccc
Confidence            3344445555554332 33 33334444445555555555555444444555555555555555555433332232 224


Q ss_pred             CceEeCcCCCC
Q 043452          373 LEILDVSENNL  383 (384)
Q Consensus       373 L~~l~l~~~~~  383 (384)
                      |+.|+|++|+|
T Consensus       105 l~~L~L~~Np~  115 (156)
T d2ifga3         105 LQELVLSGNPL  115 (156)
T ss_dssp             CCEEECCSSCC
T ss_pred             ccccccCCCcc
Confidence            55555555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=1.4e-12  Score=102.72  Aligned_cols=110  Identities=22%  Similarity=0.199  Sum_probs=61.8

Q ss_pred             hhCCCccEEEcCCCCCcCcccccCccccCCceEeeecCccCCCcchhHHHhccCCcEEEccCCcCCCccchhccCCCCCc
Q 043452          173 QHNTKLEVLRLTNNSFTGSLQLSNSKLDFLHHLDISSNSFTGRLPQNMSTILQKLVYLDMSKNKFEGSISSSISEMKDLR  252 (384)
Q Consensus       173 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  252 (384)
                      +.+++|++|++++|.+...  ..+..+++|++|++++|.+. .++. +...+++|++|++++|.++..  ..+..+++|+
T Consensus        45 ~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~-~i~~-~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~  118 (198)
T d1m9la_          45 STLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIEN-LDAVADTLEELWISYNQIASL--SGIEKLVNLR  118 (198)
T ss_dssp             HHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEEC-SCSS-HHHHHHHCCEEECSEEECCCH--HHHHHHHHSS
T ss_pred             hcccccceeECcccCCCCc--ccccCCccccChhhcccccc-cccc-ccccccccccccccccccccc--cccccccccc
Confidence            4556666666666655533  23455666666666666665 3332 222245667777777666643  2345566667


Q ss_pred             EEEeeccccccccccchhccCCcceEEEccCCcccc
Q 043452          253 FLDLSRNQFSGELSAPLLTGCFSLWLLDLSHNSFCG  288 (384)
Q Consensus       253 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  288 (384)
                      +|++++|.+.+......+..+++|+.|++++|++..
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             ccccccchhccccccccccCCCccceeecCCCcccc
Confidence            777776666522222345556666666666665543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.2e-10  Score=87.60  Aligned_cols=104  Identities=21%  Similarity=0.155  Sum_probs=58.8

Q ss_pred             cEEEccCCcCCCccchhccCCCCCcEEEeeccc-cccccccchhccCCcceEEEccCCcccccccccccccCCcCeEeCC
Q 043452          228 VYLDMSKNKFEGSISSSISEMKDLRFLDLSRNQ-FSGELSAPLLTGCFSLWLLDLSHNSFCGQVSPKFMNLTQLGWLSLD  306 (384)
Q Consensus       228 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  306 (384)
                      +.+...+..+. ..+..+...++++.|++.+++ +. .+....|.++++|+.|++++|.+....+.+|..+++|++|+|+
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            34444444443 223334455566666665543 43 4444555566666666666666665555666666666666666


Q ss_pred             CCcCCcccchhhhhccccceEEEcCCCcc
Q 043452          307 NNNFSGRISNGFLSSARSLQVLDISNNKL  335 (384)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  335 (384)
                      +|.++ .++..++.. ..|+.|++++|.+
T Consensus        89 ~N~l~-~l~~~~~~~-~~l~~L~L~~Np~  115 (156)
T d2ifga3          89 FNALE-SLSWKTVQG-LSLQELVLSGNPL  115 (156)
T ss_dssp             SSCCS-CCCSTTTCS-CCCCEEECCSSCC
T ss_pred             CCCCc-ccChhhhcc-ccccccccCCCcc
Confidence            66666 455454443 3566666666655

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.39  E-value=3.2e-07  Score=69.28  Aligned_cols=113  Identities=12%  Similarity=0.088  Sum_probs=62.5

Q ss_pred             cCCCCCcEEEeecc-cccccccc---chhccCCcceEEEccCCcccccccc----cccccCCcCeEeCCCCcCCcccchh
Q 043452          246 SEMKDLRFLDLSRN-QFSGELSA---PLLTGCFSLWLLDLSHNSFCGQVSP----KFMNLTQLGWLSLDNNNFSGRISNG  317 (384)
Q Consensus       246 ~~~~~L~~L~l~~~-~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~~~  317 (384)
                      .+.+.|++|+++++ .+......   ..+...+.|++|++++|.+.+....    .+...+.|++|++++|.+++.....
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34577777777764 34422222   2344456677777777766643322    3334566777777777766433332


Q ss_pred             h---hhccccceEEEcCCCcccc-------ccchhhhccCCccEEEccCcc
Q 043452          318 F---LSSARSLQVLDISNNKLVG-------QIPSWIGNFSSLALLTVSKNL  358 (384)
Q Consensus       318 ~---~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~  358 (384)
                      +   +...++|++|++++|.+..       .+..++...++|+.|+++.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            2   2333567777776664321       134455556667777666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=9.4e-08  Score=71.89  Aligned_cols=83  Identities=23%  Similarity=0.172  Sum_probs=46.1

Q ss_pred             cccCCcCeEeCCCCcCCcccc-hhhhhccccceEEEcCCCccccccchhhhccCCccEEEccCcccccccc-------cc
Q 043452          295 MNLTQLGWLSLDNNNFSGRIS-NGFLSSARSLQVLDISNNKLVGQIPSWIGNFSSLALLTVSKNLLEGNIP-------VQ  366 (384)
Q Consensus       295 ~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------~~  366 (384)
                      ..++.|++|++++|.+++... ...+..+++|+.|++++|.+.+...-...+..+|+.|++++|++.+...       ..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            345666666666666653211 2334556667777777766664333233344456777777776654322       12


Q ss_pred             cccCCCCceEe
Q 043452          367 LKNLEALEILD  377 (384)
Q Consensus       367 ~~~~~~L~~l~  377 (384)
                      +..+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            45567777664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.20  E-value=1.5e-06  Score=65.38  Aligned_cols=115  Identities=14%  Similarity=0.084  Sum_probs=63.3

Q ss_pred             HHHhccCCcEEEccCC-cCCCc----cchhccCCCCCcEEEeecccccccccc---chhccCCcceEEEccCCccccccc
Q 043452          220 MSTILQKLVYLDMSKN-KFEGS----ISSSISEMKDLRFLDLSRNQFSGELSA---PLLTGCFSLWLLDLSHNSFCGQVS  291 (384)
Q Consensus       220 ~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~  291 (384)
                      +....++|++|+++++ .++..    ....+...+.|++|++++|.+.+....   ..+...+.|++|++++|.+.+...
T Consensus        10 l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~   89 (167)
T d1pgva_          10 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL   89 (167)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH
Confidence            3334566777777664 34422    223445566777777777766532222   233445667777777777665332


Q ss_pred             ----ccccccCCcCeEeCCCCcCCccc------chhhhhccccceEEEcCCCc
Q 043452          292 ----PKFMNLTQLGWLSLDNNNFSGRI------SNGFLSSARSLQVLDISNNK  334 (384)
Q Consensus       292 ----~~~~~~~~L~~l~l~~~~~~~~~------~~~~~~~~~~L~~L~l~~~~  334 (384)
                          .++...+.|++|+++++.+....      ...++...++|++|+++.+.
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence                23445666777777766443111      11233345667777776653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=4.1e-07  Score=68.30  Aligned_cols=69  Identities=26%  Similarity=0.235  Sum_probs=56.9

Q ss_pred             hhhhhccccceEEEcCCCccccc--cchhhhccCCccEEEccCcccccccccccccCCCCceEeCcCCCCC
Q 043452          316 NGFLSSARSLQVLDISNNKLVGQ--IPSWIGNFSSLALLTVSKNLLEGNIPVQLKNLEALEILDVSENNLS  384 (384)
Q Consensus       316 ~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~s  384 (384)
                      ..++..+++|++|++++|.+++.  .+..+..+++|+.|++++|++.+..+-.+....+|+.+++++|+++
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            34566789999999999999854  3567789999999999999999755545556678999999999984

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.97  E-value=2.9e-06  Score=63.85  Aligned_cols=116  Identities=16%  Similarity=0.062  Sum_probs=71.2

Q ss_pred             hccCCCCCcEEEeecc-cccccccc---chhccCCcceEEEccCCcccccccc----cccccCCcCeEeCCCCcCCcccc
Q 043452          244 SISEMKDLRFLDLSRN-QFSGELSA---PLLTGCFSLWLLDLSHNSFCGQVSP----KFMNLTQLGWLSLDNNNFSGRIS  315 (384)
Q Consensus       244 ~~~~~~~L~~L~l~~~-~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~  315 (384)
                      ...+.|.|++|+++++ .++.....   ..+...++|++|++++|.+.+....    .+...+.++.+++++|.+++...
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            3456688888888874 45533322   2334567788888888877654333    33456778888888887764433


Q ss_pred             hhh---hhccccceEEEcC--CCcccc----ccchhhhccCCccEEEccCccc
Q 043452          316 NGF---LSSARSLQVLDIS--NNKLVG----QIPSWIGNFSSLALLTVSKNLL  359 (384)
Q Consensus       316 ~~~---~~~~~~L~~L~l~--~~~~~~----~~~~~~~~~~~L~~L~l~~~~~  359 (384)
                      ..+   +...++|+.++++  +|.+.+    .+..++..+++|+.|+++.++.
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            322   3344667766665  445543    2445556777888888777654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.90  E-value=5.8e-06  Score=62.09  Aligned_cols=116  Identities=10%  Similarity=0.098  Sum_probs=65.9

Q ss_pred             HHHhccCCcEEEccC-CcCCCc----cchhccCCCCCcEEEeecccccccccc---chhccCCcceEEEccCCccccccc
Q 043452          220 MSTILQKLVYLDMSK-NKFEGS----ISSSISEMKDLRFLDLSRNQFSGELSA---PLLTGCFSLWLLDLSHNSFCGQVS  291 (384)
Q Consensus       220 ~~~~~~~L~~L~l~~-~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~  291 (384)
                      +....+.|++|++++ +.++..    ....+..+++|++|++++|.++.....   ..+...+.++.+++.+|.+.+...
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            334456777777776 345432    223344667777777777776633222   234456677777777777665332


Q ss_pred             ----ccccccCCcCeEeCC--CCcCCcccch---hhhhccccceEEEcCCCcc
Q 043452          292 ----PKFMNLTQLGWLSLD--NNNFSGRISN---GFLSSARSLQVLDISNNKL  335 (384)
Q Consensus       292 ----~~~~~~~~L~~l~l~--~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~  335 (384)
                          ..+..++.|+.++|.  ++.+.+....   .++..+++|++|+++.+..
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence                344556777765554  3445432222   2234567777777776643