Citrus Sinensis ID: 043468

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720
MDLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAVWSVALAMEQKSEKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGFWTYGLGFSDTIIDPKYNCSSMKDLGQVFWPGAPWYTPKGWTLPAKDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLRELETSMIASEKCMEVNLHDDDDISSLSPSGFWVLFVLSGGISTIALVIFLWRCNWKINENLLVNKKIRC
cccccccccEEEEccccHHHHHHHHHHHccccccEEEEcccccccccccccEEEEEEccHHHHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHHcccEEEEEEEccccccccHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccccEEEEEEEcccEEEEEEEEccccccccccccccccccccccccEEEcccccccccccccccccccEEEEEEcccccEEEEEccccccccccEEEEEEHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHcccccccccEEEEEcEEEEEEcccccccccEEEEEEccccccccEEEEccccHHHHHHHHHHHHHHHHEEEEEEccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHcccEEcEEEcccHHHHHHccccccEEEEEcccHHHHHHHccccEEEEccccccccEEEEccccccccHHHHHHHHccccccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
ccHHccccEEEEEcccccHHHHHHHHHHHcccccEEEEcccccccccccccEEEEccccHHHHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHccccccEEEEEEcccHHHccccccccHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccEccccEEEEEccccccccccEEEEEEcccccEEEEEEcccccEEEEccccccccccccccccEEEcccccccccccEEcccccEEEEEEEcccccEEEEEEccccccccccEEEEHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHcccccEEEEEEEEEEEcEEEEEcccccHcccEEEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccEEEEEccccHHHHHHHcccEEEEEEcHHHHHHHHHccccccEEEcccEcccEEccEEEcccccHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccc
MDLMDSQKVEailgpqtseetsSVAEiaskkqipvlsfadatpnwaterWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYedidssatgilpHLSDALREAGAEIIHVlalphfpssrlSEELEklkggqcrVFVVHLSLELAVHLFEKANKMKMMEKDYIWITTDAFTSLVHSINTSSISSMQGIlgvrshfpedkpkfQDFCKRFRKRfgaeypeednnhepgalAVQTYDAVWSVALAMEQKSEKLNQKLLRRILLSdfdgltgkvefmnqkvapahTYQIINLMGKSyrelgfwtyglgfsdtiidpkyncssmkdlgqvfwpgapwytpkgwtlpakdqplrigvpigsefQQYVNVEYDELRNFTYFGGFSIELFKALVEKlpfylpynfipfngsydDLVKQLYLNNFAGVVGDVAIVARRCqyadfthpytesglvmifpvqksgnktllflkPFTRAVWILVAVISIYNGFVVWLIErnhwpeltgsalhqtgtffwlsfnlhgeklhsnlSRMTTLVWLFVALVISQTYTANLTSMLTargleptvnnietlqssnaIIGYSRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKYCkgftvagptykvgglgfafpkgspllPSVIEALLKVSESGKLRELETSMIASekcmevnlhddddisslspsgFWVLFVLSGGISTIALVIFLWRCNWKINENLLVNKKIRC
MDLMDSQKVEailgpqtseetsSVAEiaskkqipvlSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEypeednnhepgALAVQTYDAVWSVALAMEQKSEKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGFWTYGLGFSDTIIDPKYNCSSMKDLGQVFWPGAPWYTPKGWTLPAKDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLRELETSMIASEKCMEVNLHDDDDISSLSPSGFWVLFVLSGGISTIALVIFLWRCNWKinenllvnkkirc
MDLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAVWSVALAMEQKSEKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGFWTYGLGFSDTIIDPKYNCSSMKDLGQVFWPGAPWYTPKGWTLPAKDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLRELETSMIASEKCMEVNLHDDDDISSLSPSGFWVLFVLSGGISTIALVIFLWRCNWKINENLLVNKKIRC
*******************************QIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFP***PKFQDFCKRFRKRFGA***********GALAVQTYDAVWSVALAMEQKSEKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGFWTYGLGFSDTIIDPKYNCSSMKDLGQVFWPGAPWYTPKGWTLPAKDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVS************I***KCMEVNLHD**DISSLSPSGFWVLFVLSGGISTIALVIFLWRCNWKINENLLVN*****
MDLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLA***********ELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAVWSVALA**************RILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGFWTYGLGFSDTII*********KDLGQVFWPGAPWYTPKGWTLPAKDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLRELETSMI***********************FWVLFVLSGGISTIALVIFLWRCNWKINENLL*****RC
MDLMDSQKVEAILGP***********IASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAVWSVALAMEQKSEKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGFWTYGLGFSDTIIDPKYNCSSMKDLGQVFWPGAPWYTPKGWTLPAKDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLRELETSMIASEKCMEVNLHDDDDISSLSPSGFWVLFVLSGGISTIALVIFLWRCNWKINENLLVNKKIRC
MDLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAVWSVALAMEQKSEKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGFWTYGLGFSDTIID********KDLGQVFWPGAPWYTPKGWTLPAKDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLRELETSMIASEKC************SLSPSGFWVLFVLSGGISTIALVIFLWRCNWKINENLLV******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
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MDLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAVWSVALAMEQKSEKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGFWTYGLGFSDTIIDPKYNCSSMKDLGQVFWPGAPWYTPKGWTLPAKDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQTGTFFWLSFNLHGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLRELETSMIASEKCMEVNLHDDDDISSLSPSGFWVLFVLSGGISTIALVIFLWRCNWKINENLLVNKKIRC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query720 2.2.26 [Sep-21-2011]
Q8LGN0952 Glutamate receptor 2.7 OS yes no 0.951 0.719 0.347 1e-119
O04660901 Glutamate receptor 2.1 OS no no 0.959 0.766 0.335 1e-118
Q9LFN8967 Glutamate receptor 2.6 OS no no 0.948 0.706 0.317 1e-109
Q9LFN5918 Glutamate receptor 2.5 OS no no 0.951 0.746 0.316 1e-108
Q9C5V5947 Glutamate receptor 2.8 OS no no 0.958 0.728 0.325 1e-105
O81078940 Glutamate receptor 2.9 OS no no 0.943 0.722 0.320 1e-104
O81776896 Glutamate receptor 2.4 OS no no 0.884 0.710 0.318 1e-103
Q9SHV1920 Glutamate receptor 2.2 OS no no 0.893 0.698 0.315 1e-103
Q9SHV2895 Glutamate receptor 2.3 OS no no 0.890 0.716 0.310 1e-100
Q93YT1912 Glutamate receptor 3.2 OS no no 0.951 0.751 0.309 1e-100
>sp|Q8LGN0|GLR27_ARATH Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3 Back     alignment and function desciption
 Score =  430 bits (1105), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 265/762 (34%), Positives = 425/762 (55%), Gaps = 77/762 (10%)

Query: 1   MDLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQ 60
           +DL+ +++V AI+GP+TS +   +  +A K Q+P ++F+   P   +   P+ ++A+ + 
Sbjct: 96  LDLIKNEQVSAIIGPRTSMQAEFMIRLADKSQVPTITFSATCPLLTSINSPYFVRATLDD 155

Query: 61  LAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPS- 119
            +Q+KAIAAIV+S+ W  V  IY D +    GILP L+DAL++  A +++   +P   + 
Sbjct: 156 SSQVKAIAAIVKSFGWRNVVAIYVD-NEFGEGILPLLTDALQDVQAFVVNRCLIPQEAND 214

Query: 120 SRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDYIWITTDAFTSLVHSIN 179
            ++ +EL KL   Q RVFVVH+   L    F+KA ++ MME+ Y+W+ TD   +L+ S  
Sbjct: 215 DQILKELYKLMTMQTRVFVVHMPPTLGFRFFQKAREIGMMEEGYVWLLTDGVMNLLKSNE 274

Query: 180 T-SSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAV 238
             SS+ +MQG+LGVRSH P+ K       K FR R+   +P++ N+ E    A++ YD++
Sbjct: 275 RGSSLENMQGVLGVRSHIPKSKK-----LKNFRLRWEKMFPKKGNDEEMNIFALRAYDSI 329

Query: 239 WSVALAMEQKSEKL----------NQK--------------LLRRILLSDFDGLTGKVEF 274
            ++A+A+E+ + K           N K              LL+ +    F+GL G+ E 
Sbjct: 330 TALAMAVEKTNIKSLRYDHPIASGNNKTNLGTLGVSRYGPSLLKALSNVRFNGLAGEFEL 389

Query: 275 MNQKVAPAHTYQIINLMGKSYRELGFWTYGLGFSDTIIDPK-YNCSSM--KDLGQVFWPG 331
           +N ++  +  + +IN++G   R +G W      S+ I++ K  N +S+  + LG V WPG
Sbjct: 390 INGQLE-SSVFDVINIIGSEERIIGLWRP----SNGIVNAKSKNTTSVLGERLGPVIWPG 444

Query: 332 APWYTPKGWTLPAKDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKL 391
                PKGW +P   + LR+G+P+   F ++V+ + D + N     G+ IE+F+A+++KL
Sbjct: 445 KSKDVPKGWQIPTNGKMLRVGIPVKKGFLEFVDAKIDPISNAMTPTGYCIEIFEAVLKKL 504

Query: 392 PFYLPYNFIPF---NGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVM 448
           P+ +   +I F   + +YD++V Q+Y   +  VVGDV IVA R  Y DFT PYTESG+ M
Sbjct: 505 PYSVIPKYIAFLSPDENYDEMVYQVYTGAYDAVVGDVTIVANRSLYVDFTLPYTESGVSM 564

Query: 449 IFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSALHQTGTFF 508
           + P++ + N T +FL+P++  +W+  A   ++ GF+VW++E     +  G   HQ GT F
Sbjct: 565 MVPLKDNKN-TWVFLRPWSLDLWVTTACFFVFIGFIVWILEHRVNTDFRGPPHHQIGTSF 623

Query: 509 WLSFNL----HGEKLHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIET 564
           W +F+     H EK+ SNL+R   LVW FV LV+ Q+YTANLTS  T + L+PTV N + 
Sbjct: 624 WFAFSTMNFAHREKVVSNLARFVVLVWCFVVLVLIQSYTANLTSFFTVKLLQPTVTNWKD 683

Query: 565 LQSSNAIIGYSRCLGDYASD-LKSR-----------------------KTGAVFLEVAEA 600
           L   N  IGY R  G +  + LKS+                          A F EVA  
Sbjct: 684 LIKFNKNIGYQR--GTFVRELLKSQGFDESQLKPFGSAVECDELFSNGTITASFDEVAYI 741

Query: 601 KIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIEALLKVSESGKLRELETSMIAS 660
           K+ L++    +T+  P++K  G GF FPK SPL   V  A+L V++  +++ +E      
Sbjct: 742 KVILSQNSSKYTMVEPSFKTAGFGFVFPKKSPLTDDVSRAILNVTQGEEMQHIENKWFKK 801

Query: 661 -EKCMEVNLHDDDDISSLSPSGFWVLFVLSGGISTIALVIFL 701
              C ++N       + LS S FW LF+++G  S +AL+IF+
Sbjct: 802 PNNCPDLNTS--LSSNHLSLSSFWGLFLIAGIASFLALLIFV 841
Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells.
Arabidopsis thaliana (taxid: 3702)
>sp|O04660|GLR21_ARATH Glutamate receptor 2.1 OS=Arabidopsis thaliana GN=GLR2.1 PE=2 SV=2 Back     alignment and function description
>sp|Q9LFN8|GLR26_ARATH Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=GLR2.6 PE=2 SV=2 Back     alignment and function description
>sp|Q9LFN5|GLR25_ARATH Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=GLR2.5 PE=1 SV=2 Back     alignment and function description
>sp|Q9C5V5|GLR28_ARATH Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2 Back     alignment and function description
>sp|O81078|GLR29_ARATH Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=GLR2.9 PE=2 SV=1 Back     alignment and function description
>sp|O81776|GLR24_ARATH Glutamate receptor 2.4 OS=Arabidopsis thaliana GN=GLR2.4 PE=2 SV=2 Back     alignment and function description
>sp|Q9SHV1|GLR22_ARATH Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SHV2|GLR23_ARATH Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=GLR2.3 PE=2 SV=1 Back     alignment and function description
>sp|Q93YT1|GLR32_ARATH Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query720
302142930 1391 unnamed protein product [Vitis vinifera] 0.963 0.498 0.549 0.0
359493621 1452 PREDICTED: glutamate receptor 2.7-like [ 0.963 0.477 0.549 0.0
356546834 891 PREDICTED: glutamate receptor 2.8-like [ 0.977 0.790 0.528 0.0
225461599 845 PREDICTED: glutamate receptor 2.7-like [ 0.980 0.835 0.559 0.0
449456599 859 PREDICTED: glutamate receptor 2.5-like [ 0.961 0.805 0.531 0.0
255554704 862 glutamate receptor 2 plant, putative [Ri 0.947 0.791 0.566 0.0
307135943 863 glutamate-gated kainate-type ion channel 0.979 0.816 0.516 0.0
224061296 1005 glutamate-gated kainate-type ion channel 0.977 0.700 0.545 0.0
224061298 866 glutamate-gated kainate-type ion channel 0.977 0.812 0.543 0.0
224061294 871 glutamate-gated kainate-type ion channel 0.975 0.805 0.541 0.0
>gi|302142930|emb|CBI20225.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  814 bits (2102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/728 (54%), Positives = 533/728 (73%), Gaps = 34/728 (4%)

Query: 1    MDLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQ 60
            MDL++  +V+ I+GP+T EE S VAE+ S+  +P+LS A ATP WA+ERWPFL+QAS NQ
Sbjct: 631  MDLINKHQVQTIIGPRTWEEASLVAEVGSQAHVPILSCASATPQWASERWPFLIQASPNQ 690

Query: 61   LAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSS 120
             A+++A+ AI++SW WH+V +IYEDIDS A+ ++PH + AL++ GAEI  ++ALP F SS
Sbjct: 691  QAEIEAVTAIIRSWGWHRVAIIYEDIDSVASEVIPHFTYALQDIGAEISRLVALPPFASS 750

Query: 121  RLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDYIWITTDAFTSLVHSINT 180
             LS+EL  LK  QCRVFVVH SL  A H+F++AN+M M+EK Y+WIT D  TSL HS+N 
Sbjct: 751  -LSKELTSLKKEQCRVFVVHSSLSFATHMFQQANQMGMIEKGYVWITMDTITSLAHSLNA 809

Query: 181  SSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAVWS 240
            S+IS+MQG++GV+S+F E +PKFQDF  RFRK+F  E+PEE+ NHE G  AVQ YDA+W+
Sbjct: 810  STISTMQGVVGVKSYFNETEPKFQDFYVRFRKKFSLEHPEEE-NHELGIFAVQAYDAIWT 868

Query: 241  VALAMEQKSEKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGF 300
            VA A+   +    Q +L +I L+ F GLTG VEF  +++AP   +QI+N++G+SYRELGF
Sbjct: 869  VAQALVGNNLG-GQHILEQISLTSFHGLTGLVEFTGRRIAPLRRFQIVNMIGRSYRELGF 927

Query: 301  WTYGLGFSDTIIDPKYNCSSMKDLGQVFWPGAPWYTPKGWTLPAKDQPLRIGVPIGSEFQ 360
            WT   GF+DT+ +      SM+ LGQVFWPG PW  P GWTLP+  + L+IGVPIGS F+
Sbjct: 928  WTSESGFTDTMDEKLDYNPSMRTLGQVFWPGGPWSIPTGWTLPSSYKTLKIGVPIGSVFK 987

Query: 361  QYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLPYNFIPFNGSYDDLVKQLYLNNFAG 420
             +VN  YD   N + F G +I++F+A++E LP+YLP+ FIPFNGSYD LV QL    F  
Sbjct: 988  FFVNPMYDSENNLS-FSGLTIKIFEAVLEYLPYYLPHQFIPFNGSYDALVLQLVHPEFDA 1046

Query: 421  VVGDVAIVARRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIY 480
            VVGDVAI A R ++A+FT+PYTES LVMI PVQ + N+  LF+KPFT+++W L  +I+IY
Sbjct: 1047 VVGDVAITAERNRHAEFTYPYTESRLVMIVPVQ-TRNRAWLFIKPFTKSMWALTTIINIY 1105

Query: 481  NGFVVWLIERNHWPELTGSALHQTGTFFWLS----FNLHGEKLHSNLSRMTTLVWLFVAL 536
            NGFV+WLIERNH  +L GS  +Q G   WL+    F+L G++LHSNLSRM  ++WLFVAL
Sbjct: 1106 NGFVIWLIERNHCSDLKGSVSNQIGVLLWLAFTTLFSLQGQELHSNLSRMAMVMWLFVAL 1165

Query: 537  VISQTYTANLTSMLTARGLEPTVNNIETLQSSNAIIGYSR----------CLG------- 579
            VI+Q+YTANL SMLT   LEPTV++IE+L+ S A++G SR           LG       
Sbjct: 1166 VITQSYTANLASMLTVETLEPTVDDIESLKISKAVVGCSRGAFVANYLEKALGFHTDNIR 1225

Query: 580  ------DYASDLKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSPL 633
                  +YA  L++ +  A FLE   AK+FLA+YCKGF  AGPT+KVGG GF FPKGSPL
Sbjct: 1226 RITAPEEYAQALRNGEIAAAFLEAPLAKLFLARYCKGFARAGPTFKVGGFGFVFPKGSPL 1285

Query: 634  LPSVIEALLKVSESGKLRELETSMIASEKCMEVNLHDDDDISSLSPSGFWVLFVLSGGIS 693
            L  + EALLKVSESGKL+ELE +M+AS+KC+ ++  ++D  SSLSP+ FWVLF+++GG S
Sbjct: 1286 LVDISEALLKVSESGKLQELENAMVASQKCVNMDWEEED--SSLSPNSFWVLFIITGGTS 1343

Query: 694  TIALVIFL 701
            T+AL+ ++
Sbjct: 1344 TVALLTYI 1351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359493621|ref|XP_002282909.2| PREDICTED: glutamate receptor 2.7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356546834|ref|XP_003541827.1| PREDICTED: glutamate receptor 2.8-like [Glycine max] Back     alignment and taxonomy information
>gi|225461599|ref|XP_002282936.1| PREDICTED: glutamate receptor 2.7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449456599|ref|XP_004146036.1| PREDICTED: glutamate receptor 2.5-like [Cucumis sativus] gi|449528706|ref|XP_004171344.1| PREDICTED: glutamate receptor 2.5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255554704|ref|XP_002518390.1| glutamate receptor 2 plant, putative [Ricinus communis] gi|223542485|gb|EEF44026.1| glutamate receptor 2 plant, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|307135943|gb|ADN33804.1| glutamate-gated kainate-type ion channel receptor subunit glur5 [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|224061296|ref|XP_002300413.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222847671|gb|EEE85218.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224061298|ref|XP_002300414.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222847672|gb|EEE85219.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224061294|ref|XP_002300412.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222847670|gb|EEE85217.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query720
TAIR|locus:2066107 952 GLR2.7 "glutamate receptor 2.7 0.451 0.341 0.383 3.6e-117
TAIR|locus:2066086 947 GLR2.8 "glutamate receptor 2.8 0.438 0.333 0.381 1.6e-108
TAIR|locus:2047256920 GLR2.2 "glutamate receptor 2.2 0.512 0.401 0.332 1.3e-107
TAIR|locus:2066148 940 GLR2.9 "glutamate receptor 2.9 0.430 0.329 0.375 8.2e-107
TAIR|locus:2047251895 GLR2.3 "glutamate receptor 2.3 0.505 0.406 0.330 2.7e-102
TAIR|locus:2122128912 GLUR2 "glutamate receptor 2" [ 0.447 0.353 0.343 5.6e-99
TAIR|locus:2081805903 GLR3.6 "glutamate receptor 3.6 0.443 0.353 0.361 8.2e-98
TAIR|locus:2207165959 GLR3.4 "AT1G05200" [Arabidopsi 0.483 0.362 0.336 4.3e-91
TAIR|locus:2206095933 GLR3.3 "glutamate receptor 3.3 0.448 0.346 0.360 7.3e-91
TAIR|locus:2181196901 GLR2.1 "glutamate receptor 2.1 0.440 0.351 0.388 4.5e-79
TAIR|locus:2066107 GLR2.7 "glutamate receptor 2.7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 603 (217.3 bits), Expect = 3.6e-117, Sum P(3) = 3.6e-117
 Identities = 132/344 (38%), Positives = 204/344 (59%)

Query:   256 LLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGFWTYGLGFSDTIIDPK 315
             LL+ +    F+GL G+ E +N ++  +  + +IN++G   R +G W    G    I++ K
Sbjct:   371 LLKALSNVRFNGLAGEFELINGQLESS-VFDVINIIGSEERIIGLWRPSNG----IVNAK 425

Query:   316 Y-NCSSM--KDLGQVFWPGAPWYTPKGWTLPAKDQPLRIGVPIGSEFQQYVNVEYDELRN 372
               N +S+  + LG V WPG     PKGW +P   + LR+G+P+   F ++V+ + D + N
Sbjct:   426 SKNTTSVLGERLGPVIWPGKSKDVPKGWQIPTNGKMLRVGIPVKKGFLEFVDAKIDPISN 485

Query:   373 FTYFGGFSIELFKALVEKLPFYLPYNFIPF---NGSYDDLVKQLYLNNFAGVVGDVAIVA 429
                  G+ IE+F+A+++KLP+ +   +I F   + +YD++V Q+Y   +  VVGDV IVA
Sbjct:   486 AMTPTGYCIEIFEAVLKKLPYSVIPKYIAFLSPDENYDEMVYQVYTGAYDAVVGDVTIVA 545

Query:   430 RRCQYADFTHPYTESGLVMIFPVQKSGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIE 489
              R  Y DFT PYTESG+ M+ P++ + N T +FL+P++  +W+  A   ++ GF+VW++E
Sbjct:   546 NRSLYVDFTLPYTESGVSMMVPLKDNKN-TWVFLRPWSLDLWVTTACFFVFIGFIVWILE 604

Query:   490 RNHWPELTGSALHQTGTFFWLSFNL----HGEKLHSNLSRMTTLVWLFVALVISQTYTAN 545
                  +  G   HQ GT FW +F+     H EK+ SNL+R   LVW FV LV+ Q+YTAN
Sbjct:   605 HRVNTDFRGPPHHQIGTSFWFAFSTMNFAHREKVVSNLARFVVLVWCFVVLVLIQSYTAN 664

Query:   546 LTSMLTARGLEPTVNNIETLQSSNAIIGYSRCLGDYASDL-KSR 588
             LTS  T + L+PTV N + L   N  IGY R  G +  +L KS+
Sbjct:   665 LTSFFTVKLLQPTVTNWKDLIKFNKNIGYQR--GTFVRELLKSQ 706
GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA
GO:0005215 "transporter activity" evidence=IEA
GO:0005217 "intracellular ligand-gated ion channel activity" evidence=ISS
GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006810 "transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0006874 "cellular calcium ion homeostasis" evidence=NAS
GO:0009416 "response to light stimulus" evidence=NAS
GO:0005773 "vacuole" evidence=IDA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
TAIR|locus:2066086 GLR2.8 "glutamate receptor 2.8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047256 GLR2.2 "glutamate receptor 2.2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066148 GLR2.9 "glutamate receptor 2.9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047251 GLR2.3 "glutamate receptor 2.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122128 GLUR2 "glutamate receptor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081805 GLR3.6 "glutamate receptor 3.6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207165 GLR3.4 "AT1G05200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206095 GLR3.3 "glutamate receptor 3.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181196 GLR2.1 "glutamate receptor 2.1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query720
cd06366350 cd06366, PBP1_GABAb_receptor, Ligand-binding domai 2e-94
pfam01094343 pfam01094, ANF_receptor, Receptor family ligand bi 7e-47
cd06350348 cd06350, PBP1_GPCR_family_C_like, Ligand-binding d 7e-43
cd06269298 cd06269, PBP1_glutamate_receptors_like, Family C G 1e-32
pfam00060268 pfam00060, Lig_chan, Ligand-gated ion channel 4e-32
cd04509299 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family 4e-22
cd06351328 cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leuci 1e-21
cd06382327 cd06382, PBP1_iGluR_Kainate, N-terminal leucine/is 9e-20
pfam13458343 pfam13458, Peripla_BP_6, Periplasmic binding prote 9e-19
cd06368324 cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leuc 2e-17
COG0683366 COG0683, LivK, ABC-type branched-chain amino acid 9e-17
cd06268298 cd06268, PBP1_ABC_transporter_LIVBP_like, Periplas 3e-16
cd01391269 cd01391, Periplasmic_Binding_Protein_Type_1, Type 4e-16
smart00079133 smart00079, PBPe, Eukaryotic homologues of bacteri 8e-12
cd06352389 cd06352, PBP1_NPR_GC_like, Ligand-binding domain o 2e-11
cd06342334 cd06342, PBP1_ABC_LIVBP_like, Type I periplasmic l 5e-09
cd06367362 cd06367, PBP1_iGluR_NMDA, N-terminal leucine/isole 5e-08
cd06361403 cd06361, PBP1_GPC6A_like, Ligand-binding domain of 5e-08
cd06363410 cd06363, PBP1_Taste_receptor, Ligand-binding domai 2e-07
pfam00497220 pfam00497, SBP_bac_3, Bacterial extracellular solu 2e-05
cd06340347 cd06340, PBP1_ABC_ligand_binding_like_6, Type I pe 2e-05
cd06347334 cd06347, PBP1_ABC_ligand_binding_like_12, Type I p 5e-05
COG0834275 COG0834, HisJ, ABC-type amino acid transport/signa 9e-05
cd06393384 cd06393, PBP1_iGluR_Kainate_GluR5_7, N-terminal le 1e-04
cd06338345 cd06338, PBP1_ABC_ligand_binding_like_5, Type I pe 2e-04
cd06374472 cd06374, PBP1_mGluR_groupI, Ligand binding domain 2e-04
cd06331333 cd06331, PBP1_AmiC_like, Type I periplasmic compon 2e-04
smart00062219 smart00062, PBPb, Bacterial periplasmic substrate- 8e-04
cd06333312 cd06333, PBP1_ABC-type_HAAT_like, Type I periplasm 8e-04
cd06380382 cd06380, PBP1_iGluR_AMPA, N-terminal leucine/isole 0.001
cd06349340 cd06349, PBP1_ABC_ligand_binding_like_14, Type I p 0.002
pfam00497220 pfam00497, SBP_bac_3, Bacterial extracellular solu 0.004
cd00134218 cd00134, PBPb, Bacterial periplasmic transport sys 0.004
>gnl|CDD|107361 cd06366, PBP1_GABAb_receptor, Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA) Back     alignment and domain information 
 Score =  296 bits (760), Expect = 2e-94
 Identities = 116/314 (36%), Positives = 179/314 (57%), Gaps = 31/314 (9%)

Query: 1   MDLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWAT-ERWPFLLQASQN 59
           +DL++++ V AI+GPQ S     VAE+A++  +PVLSFA  +P+ ++  ++P+  + + +
Sbjct: 59  LDLLENKPVVAIIGPQCSSVAEFVAEVANEWNVPVLSFAATSPSLSSRLQYPYFFRTTPS 118

Query: 60  QLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALP-HFP 118
             +Q  AIAA+++ + W +V  IYED D   +G LP L DAL+EAG EI +  A P    
Sbjct: 119 DSSQNPAIAALLKKFGWRRVATIYEDDDY-GSGGLPDLVDALQEAGIEISYRAAFPPSAN 177

Query: 119 SSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDYIWITTDAFTSL---- 174
              +++ L+KLK    RV VVH S +LA  +F +A K+ MM K Y+WI TD  +S     
Sbjct: 178 DDDITDALKKLKEKDSRVIVVHFSPDLARRVFCEAYKLGMMGKGYVWILTDWLSSNWWSS 237

Query: 175 VHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQT 234
               +   + +MQG++GVRS+ P      Q+F  R+RKRFG E PE     EP   A+  
Sbjct: 238 SDCTDEEMLEAMQGVIGVRSYVPNSSMTLQEFTSRWRKRFGNENPEL---TEPSIYALYA 294

Query: 235 YDAVWSVALAMEQKSEKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKS 294
           YDAVW+                      ++F+GL+G V+F   +   +  ++IIN++GK 
Sbjct: 295 YDAVWA---------------------STNFNGLSGPVQFDGGRRLASPAFEIINIIGKG 333

Query: 295 YRELGFWTYGLGFS 308
           YR++GFW+   G S
Sbjct: 334 YRKIGFWSSESGLS 347

Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example. Length = 350
>gnl|CDD|216296 pfam01094, ANF_receptor, Receptor family ligand binding region Back     alignment and domain information
>gnl|CDD|153138 cd06350, PBP1_GPCR_family_C_like, Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs) Back     alignment and domain information
>gnl|CDD|153137 cd06269, PBP1_glutamate_receptors_like, Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors Back     alignment and domain information
>gnl|CDD|215685 pfam00060, Lig_chan, Ligand-gated ion channel Back     alignment and domain information
>gnl|CDD|107261 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems Back     alignment and domain information
>gnl|CDD|107346 cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs) Back     alignment and domain information
>gnl|CDD|107377 cd06382, PBP1_iGluR_Kainate, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors Back     alignment and domain information
>gnl|CDD|222144 pfam13458, Peripla_BP_6, Periplasmic binding protein Back     alignment and domain information
>gnl|CDD|107363 cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors Back     alignment and domain information
>gnl|CDD|223755 COG0683, LivK, ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|107263 cd06268, PBP1_ABC_transporter_LIVBP_like, Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily Back     alignment and domain information
>gnl|CDD|107248 cd01391, Periplasmic_Binding_Protein_Type_1, Type 1 periplasmic binding fold superfamily Back     alignment and domain information
>gnl|CDD|197504 smart00079, PBPe, Eukaryotic homologues of bacterial periplasmic substrate binding proteins Back     alignment and domain information
>gnl|CDD|107347 cd06352, PBP1_NPR_GC_like, Ligand-binding domain of membrane guanylyl-cyclase receptors Back     alignment and domain information
>gnl|CDD|107337 cd06342, PBP1_ABC_LIVBP_like, Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine) Back     alignment and domain information
>gnl|CDD|107362 cd06367, PBP1_iGluR_NMDA, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors Back     alignment and domain information
>gnl|CDD|107356 cd06361, PBP1_GPC6A_like, Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor Back     alignment and domain information
>gnl|CDD|107358 cd06363, PBP1_Taste_receptor, Ligand-binding domain of the T1R taste receptor Back     alignment and domain information
>gnl|CDD|215950 pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3 Back     alignment and domain information
>gnl|CDD|107335 cd06340, PBP1_ABC_ligand_binding_like_6, Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>gnl|CDD|107342 cd06347, PBP1_ABC_ligand_binding_like_12, Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>gnl|CDD|223904 COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|107388 cd06393, PBP1_iGluR_Kainate_GluR5_7, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor Back     alignment and domain information
>gnl|CDD|107333 cd06338, PBP1_ABC_ligand_binding_like_5, Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>gnl|CDD|107369 cd06374, PBP1_mGluR_groupI, Ligand binding domain of the group I metabotropic glutamate receptor Back     alignment and domain information
>gnl|CDD|107326 cd06331, PBP1_AmiC_like, Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF) Back     alignment and domain information
>gnl|CDD|214497 smart00062, PBPb, Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>gnl|CDD|107328 cd06333, PBP1_ABC-type_HAAT_like, Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids Back     alignment and domain information
>gnl|CDD|107375 cd06380, PBP1_iGluR_AMPA, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor Back     alignment and domain information
>gnl|CDD|107344 cd06349, PBP1_ABC_ligand_binding_like_14, Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems Back     alignment and domain information
>gnl|CDD|215950 pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3 Back     alignment and domain information
>gnl|CDD|238078 cd00134, PBPb, Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 720
KOG1054897 consensus Glutamate-gated AMPA-type ion channel re 100.0
KOG4440 993 consensus NMDA selective glutamate-gated ion chann 100.0
KOG1053 1258 consensus Glutamate-gated NMDA-type ion channel re 100.0
KOG1052656 consensus Glutamate-gated kainate-type ion channel 100.0
cd06361403 PBP1_GPC6A_like Ligand-binding domain of the promi 100.0
cd06389370 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucin 100.0
cd06390364 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucin 100.0
cd06380382 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/vali 100.0
cd06388371 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucin 100.0
cd06379377 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/ 100.0
cd06366350 PBP1_GABAb_receptor Ligand-binding domain of GABAb 100.0
cd06393384 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isol 100.0
cd06367362 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/vali 100.0
cd06386387 PBP1_NPR_C_like Ligand-binding domain of type C na 100.0
cd06375458 PBP1_mGluR_groupII Ligand binding domain of the gr 100.0
cd06365469 PBP1_Pheromone_receptor Ligand-binding domain of t 100.0
cd06387372 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucin 100.0
cd06385405 PBP1_NPR_A Ligand-binding domain of type A natriur 100.0
cd06373396 PBP1_NPR_like Ligand binding domain of natriuretic 100.0
cd06363410 PBP1_Taste_receptor Ligand-binding domain of the T 100.0
cd06376463 PBP1_mGluR_groupIII Ligand-binding domain of the g 100.0
cd06362452 PBP1_mGluR Ligand binding domain of the metabotrop 100.0
cd06352389 PBP1_NPR_GC_like Ligand-binding domain of membrane 100.0
cd06374472 PBP1_mGluR_groupI Ligand binding domain of the gro 100.0
cd06364510 PBP1_CaSR Ligand-binding domain of the CaSR calciu 100.0
cd06372391 PBP1_GC_G_like Ligand-binding domain of membrane g 100.0
cd06384399 PBP1_NPR_B Ligand-binding domain of type B natriur 100.0
cd06371382 PBP1_sensory_GC_DEF_like Ligand-binding domain of 99.98
cd06392400 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/v 99.98
cd06370404 PBP1_Speract_GC_like Ligand-binding domain of memb 99.97
cd06391400 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/v 99.97
cd06382327 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/v 99.97
cd06342334 PBP1_ABC_LIVBP_like Type I periplasmic ligand-bind 99.97
PRK15404369 leucine ABC transporter subunit substrate-binding 99.97
cd06338345 PBP1_ABC_ligand_binding_like_5 Type I periplasmic 99.97
PF01094348 ANF_receptor: Receptor family ligand binding regio 99.97
cd06345344 PBP1_ABC_ligand_binding_like_10 Type I periplasmic 99.97
cd06394333 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleu 99.97
cd06378362 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/ 99.96
cd06381363 PBP1_iGluR_delta_like N-terminal leucine/isoleucin 99.96
KOG1056878 consensus Glutamate-gated metabotropic ion channel 99.96
cd06346312 PBP1_ABC_ligand_binding_like_11 Type I periplasmic 99.96
cd06368324 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleu 99.96
cd06355348 PBP1_FmdD_like Periplasmic component (FmdD) of an 99.96
cd06340347 PBP1_ABC_ligand_binding_like_6 Type I periplasmic 99.96
cd06348344 PBP1_ABC_ligand_binding_like_13 Type I periplasmic 99.96
cd06344332 PBP1_ABC_ligand_binding_like_9 Type I periplasmic 99.96
cd06327334 PBP1_SBP_like_1 Periplasmic solute-binding domain 99.96
TIGR03669374 urea_ABC_arch urea ABC transporter, substrate-bind 99.96
cd06343362 PBP1_ABC_ligand_binding_like_8 Type I periplasmic 99.96
cd06360336 PBP1_alkylbenzenes_like Type I periplasmic binding 99.95
COG0683366 LivK ABC-type branched-chain amino acid transport 99.95
cd06349340 PBP1_ABC_ligand_binding_like_14 Type I periplasmic 99.95
cd06329342 PBP1_SBP_like_3 Periplasmic solute-binding domain 99.95
cd06328333 PBP1_SBP_like_2 Periplasmic solute-binding domain 99.95
cd06359333 PBP1_Nba_like Type I periplasmic binding component 99.95
cd06336347 PBP1_ABC_ligand_binding_like_3 Type I periplasmic 99.95
cd06331333 PBP1_AmiC_like Type I periplasmic components of am 99.95
TIGR03407359 urea_ABC_UrtA urea ABC transporter, urea binding p 99.95
cd06347334 PBP1_ABC_ligand_binding_like_12 Type I periplasmic 99.95
cd06357360 PBP1_AmiC Periplasmic binding domain of amidase (A 99.95
cd06350348 PBP1_GPCR_family_C_like Ligand-binding domain of m 99.94
PF13458343 Peripla_BP_6: Periplasmic binding protein; PDB: 4E 99.94
cd06330346 PBP1_Arsenic_SBP_like Periplasmic solute-binding d 99.94
cd06356334 PBP1_Amide_Urea_BP_like Periplasmic component (Fmd 99.94
cd06337357 PBP1_ABC_ligand_binding_like_4 Type I periplasmic 99.94
cd06335347 PBP1_ABC_ligand_binding_like_2 Type I periplasmic 99.94
cd06332333 PBP1_aromatic_compounds_like Type I periplasmic bi 99.94
cd06334351 PBP1_ABC_ligand_binding_like_1 Type I periplasmic 99.93
cd06358333 PBP1_NHase Type I periplasmic-binding protein of t 99.93
cd06383368 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine 99.93
cd06351328 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleuc 99.93
TIGR03863347 PQQ_ABC_bind ABC transporter, substrate binding pr 99.92
PF13433363 Peripla_BP_5: Periplasmic binding protein domain; 99.92
cd06339336 PBP1_YraM_LppC_lipoprotein_like Periplasmic bindin 99.91
cd06326336 PBP1_STKc_like Type I periplasmic binding domain o 99.9
cd06377382 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/ 99.89
KOG1055865 consensus GABA-B ion channel receptor subunit GABA 99.87
cd06341341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic 99.86
cd06269298 PBP1_glutamate_receptors_like Family C G-protein c 99.86
PRK09495247 glnH glutamine ABC transporter periplasmic protein 99.84
PRK10797302 glutamate and aspartate transporter subunit; Provi 99.83
cd06369380 PBP1_GC_C_enterotoxin_receptor Ligand-binding doma 99.82
PF00497225 SBP_bac_3: Bacterial extracellular solute-binding 99.82
PRK11260266 cystine transporter subunit; Provisional 99.82
cd06333312 PBP1_ABC-type_HAAT_like Type I periplasmic binding 99.81
PRK15010260 ABC transporter lysine/arginine/ornithine binding 99.8
cd04509299 PBP1_ABC_transporter_GCPR_C_like Family C of G-pro 99.8
PRK15007243 putative ABC transporter arginine-biding protein; 99.78
PRK11917259 bifunctional adhesin/ABC transporter aspartate/glu 99.78
TIGR01096250 3A0103s03R lysine-arginine-ornithine-binding perip 99.77
cd06268298 PBP1_ABC_transporter_LIVBP_like Periplasmic bindin 99.76
PRK15437259 histidine ABC transporter substrate-binding protei 99.76
TIGR02995275 ectoine_ehuB ectoine/hydroxyectoine ABC transporte 99.76
PRK10859 482 membrane-bound lytic transglycosylase F; Provision 99.72
PRK09959 1197 hybrid sensory histidine kinase in two-component r 99.68
TIGR03870246 ABC_MoxJ methanol oxidation system protein MoxJ. T 99.67
TIGR02285268 conserved hypothetical protein. Members of this fa 99.66
PF00060148 Lig_chan: Ligand-gated ion channel; InterPro: IPR0 99.66
PRK09959 1197 hybrid sensory histidine kinase in two-component r 99.56
COG0834275 HisJ ABC-type amino acid transport/signal transduc 99.56
TIGR03871232 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associa 99.54
cd00134218 PBPb Bacterial periplasmic transport systems use m 99.54
smart00062219 PBPb Bacterial periplasmic substrate-binding prote 99.53
COG4623 473 Predicted soluble lytic transglycosylase fused to 99.38
cd01391269 Periplasmic_Binding_Protein_Type_1 Type 1 periplas 99.22
smart00079134 PBPe Eukaryotic homologues of bacterial periplasmi 98.97
PF1061365 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- 98.92
PF04348536 LppC: LppC putative lipoprotein; InterPro: IPR0074 98.76
TIGR01098254 3A0109s03R phosphate/phosphite/phosphonate ABC tra 98.75
PRK00489287 hisG ATP phosphoribosyltransferase; Reviewed 98.32
cd01537264 PBP1_Repressors_Sugar_Binding_like Ligand-binding 98.02
TIGR03431288 PhnD phosphonate ABC transporter, periplasmic phos 97.98
cd01536267 PBP1_ABC_sugar_binding_like Periplasmic sugar-bind 97.84
cd06267264 PBP1_LacI_sugar_binding_like Ligand binding domain 97.73
cd06320275 PBP1_allose_binding Periplasmic allose-binding dom 97.58
cd06300272 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-bi 97.5
COG3107604 LppC Putative lipoprotein [General function predic 97.31
cd06282266 PBP1_GntR_like_2 Ligand-binding domain of putative 97.25
cd06323268 PBP1_ribose_binding Periplasmic sugar-binding doma 97.2
cd06319277 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-b 97.17
cd06325281 PBP1_ABC_uncharacterized_transporter Type I peripl 97.05
PF12974243 Phosphonate-bd: ABC transporter, phosphonate, peri 96.89
cd06273268 PBP1_GntR_like_1 This group includes the ligand-bi 96.77
cd06301272 PBP1_rhizopine_binding_like Periplasmic binding pr 96.76
cd01545270 PBP1_SalR Ligand-binding domain of DNA transcripti 96.72
PF13407257 Peripla_BP_4: Periplasmic binding protein domain; 96.71
cd06312271 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-bi 96.69
PRK11553314 alkanesulfonate transporter substrate-binding subu 96.64
cd06298268 PBP1_CcpA_like Ligand-binding domain of the catabo 96.5
cd06305273 PBP1_methylthioribose_binding_like Methylthioribos 96.48
PRK10653295 D-ribose transporter subunit RbsB; Provisional 96.47
cd06317275 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-bi 96.38
cd06310273 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-bi 96.36
cd06322267 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-b 96.34
cd06303280 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding prot 96.32
TIGR01481329 ccpA catabolite control protein A. Catabolite cont 96.25
cd06309273 PBP1_YtfQ_like Periplasmic binding domain of ABC-t 96.24
cd06289268 PBP1_MalI_like Ligand-binding domain of MalI, a tr 96.23
COG2984322 ABC-type uncharacterized transport system, peripla 96.17
cd06271268 PBP1_AglR_RafR_like Ligand-binding domain of DNA t 96.17
PF00532279 Peripla_BP_1: Periplasmic binding proteins and sug 96.1
COG1609333 PurR Transcriptional regulators [Transcription] 95.99
cd06295275 PBP1_CelR Ligand binding domain of a transcription 95.83
cd06278266 PBP1_LacI_like_2 Ligand-binding domain of uncharac 95.8
cd06311274 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-bi 95.78
cd01575268 PBP1_GntR Ligand-binding domain of DNA transcripti 95.75
cd06284267 PBP1_LacI_like_6 Ligand-binding domain of an uncha 95.71
cd06313272 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-bi 95.69
cd01542259 PBP1_TreR_like Ligand-binding domain of DNA transc 95.53
cd06308270 PBP1_sensor_kinase_like Periplasmic binding domain 95.51
TIGR01729300 taurine_ABC_bnd taurine ABC transporter, periplasm 95.42
TIGR02990239 ectoine_eutA ectoine utilization protein EutA. Mem 95.41
COG3221299 PhnD ABC-type phosphate/phosphonate transport syst 95.37
cd01574264 PBP1_LacI Ligand-binding domain of DNA transcripti 95.37
PRK11303328 DNA-binding transcriptional regulator FruR; Provis 95.36
PF13379252 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_ 95.29
cd06287269 PBP1_LacI_like_8 Ligand-binding domain of uncharac 95.25
cd06321271 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-b 95.14
cd06283267 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of 95.13
cd06288269 PBP1_sucrose_transcription_regulator Ligand-bindin 95.04
cd06294270 PBP1_ycjW_transcription_regulator_like Ligand-bind 94.97
cd06306268 PBP1_TorT-like TorT-like proteins, a periplasmic b 94.95
cd06281269 PBP1_LacI_like_5 Ligand-binding domain of uncharac 94.92
cd06270268 PBP1_GalS_like Ligand binding domain of DNA transc 94.9
cd06299265 PBP1_LacI_like_13 Ligand-binding domain of DNA-bin 94.87
cd06293269 PBP1_LacI_like_11 Ligand-binding domain of unchara 94.87
PRK10014342 DNA-binding transcriptional repressor MalI; Provis 94.86
cd06324305 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-b 94.85
cd06316294 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-bi 94.8
cd06274264 PBP1_FruR Ligand binding domain of DNA transcripti 94.75
cd06291265 PBP1_Qymf_like Ligand binding domain of the lacI-l 94.71
cd01540289 PBP1_arabinose_binding Periplasmic L-arabinose-bin 94.69
COG1879322 RbsB ABC-type sugar transport system, periplasmic 94.63
cd06275269 PBP1_PurR Ligand-binding domain of purine represso 94.63
cd01543265 PBP1_XylR Ligand-binding domain of DNA transcripti 94.56
cd06280263 PBP1_LacI_like_4 Ligand-binding domain of uncharac 94.51
PRK14987331 gluconate operon transcriptional regulator; Provis 94.5
cd06277268 PBP1_LacI_like_1 Ligand-binding domain of uncharac 94.47
TIGR02417327 fruct_sucro_rep D-fructose-responsive transcriptio 94.45
cd01541273 PBP1_AraR Ligand-binding domain of DNA transcripti 94.4
cd01538288 PBP1_ABC_xylose_binding Periplasmic xylose-binding 94.3
cd01539303 PBP1_GGBP Periplasmic glucose/galactose-binding pr 94.22
cd01544270 PBP1_GalR Ligand-binding domain of DNA transcripti 94.22
cd06307275 PBP1_uncharacterized_sugar_binding Periplasmic sug 94.2
cd06297269 PBP1_LacI_like_12 Ligand-binding domain of unchara 94.12
cd06314271 PBP1_tmGBP Periplasmic sugar-binding domain of The 93.93
cd06272261 PBP1_hexuronate_repressor_like Ligand-binding doma 93.81
COG3473238 Maleate cis-trans isomerase [Secondary metabolites 93.68
PRK09526342 lacI lac repressor; Reviewed 93.64
PRK09701311 D-allose transporter subunit; Provisional 93.63
cd06285265 PBP1_LacI_like_7 Ligand-binding domain of uncharac 93.57
cd06292273 PBP1_LacI_like_10 Ligand-binding domain of unchara 93.5
cd06296270 PBP1_CatR_like Ligand-binding domain of a LacI-lik 93.33
cd06279283 PBP1_LacI_like_3 Ligand-binding domain of uncharac 93.29
PRK10703341 DNA-binding transcriptional repressor PurR; Provis 93.26
PRK10936343 TMAO reductase system periplasmic protein TorT; Pr 93.23
cd06318282 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-bi 93.14
cd06302298 PBP1_LsrB_Quorum_Sensing Periplasmic binding domai 93.09
PF04392294 ABC_sub_bind: ABC transporter substrate binding pr 92.97
PRK10423327 transcriptional repressor RbsR; Provisional 92.95
PRK15408336 autoinducer 2-binding protein lsrB; Provisional 92.94
cd06290265 PBP1_LacI_like_9 Ligand-binding domain of uncharac 92.83
PRK09492315 treR trehalose repressor; Provisional 92.59
cd06354265 PBP1_BmpA_PnrA_like Periplasmic binding domain of 92.51
PRK10339327 DNA-binding transcriptional repressor EbgR; Provis 92.27
PF03808172 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp 92.22
PRK10727343 DNA-binding transcriptional regulator GalR; Provis 92.08
TIGR02955295 TMAO_TorT TMAO reductase system periplasmic protei 91.95
PRK10401346 DNA-binding transcriptional regulator GalS; Provis 91.32
TIGR03427328 ABC_peri_uca ABC transporter periplasmic binding p 91.25
PF03466209 LysR_substrate: LysR substrate binding domain; Int 91.17
cd06286260 PBP1_CcpB_like Ligand-binding domain of a novel tr 91.1
TIGR02405311 trehalos_R_Ecol trehalose operon repressor, proteo 91.02
TIGR02122320 TRAP_TAXI TRAP transporter solute receptor, TAXI f 90.68
TIGR01728288 SsuA_fam ABC transporter, substrate-binding protei 90.26
TIGR02634302 xylF D-xylose ABC transporter, substrate-binding p 90.2
cd06533171 Glyco_transf_WecG_TagA The glycosyltransferase Wec 89.9
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 89.6
PRK10355330 xylF D-xylose transporter subunit XylF; Provisiona 89.2
cd06304260 PBP1_BmpA_like Periplasmic binding component of a 89.05
PRK15395330 methyl-galactoside ABC transporter galactose-bindi 88.76
PF13531230 SBP_bac_11: Bacterial extracellular solute-binding 88.71
PF13377160 Peripla_BP_3: Periplasmic binding protein-like dom 88.62
PRK11041309 DNA-binding transcriptional regulator CytR; Provis 88.41
PRK05452479 anaerobic nitric oxide reductase flavorubredoxin; 88.3
PF09084216 NMT1: NMT1/THI5 like; InterPro: IPR015168 This ent 88.24
PF12727193 PBP_like: PBP superfamily domain; InterPro: IPR024 87.41
TIGR00035229 asp_race aspartate racemase. 86.79
TIGR02637302 RhaS rhamnose ABC transporter, rhamnose-binding pr 86.49
cd06276247 PBP1_FucR_like Ligand-binding domain of a transcri 84.78
PF13685250 Fe-ADH_2: Iron-containing alcohol dehydrogenase; P 84.71
TIGR00696177 wecB_tagA_cpsF bacterial polymer biosynthesis prot 83.19
PF14503232 YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B. 83.13
cd05466197 PBP2_LTTR_substrate The substrate binding domain o 82.19
TIGR01256216 modA molybdenum ABC transporter, periplasmic molyb 82.08
PRK09860383 putative alcohol dehydrogenase; Provisional 81.66
cd02071122 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin 81.55
PRK11063271 metQ DL-methionine transporter substrate-binding s 81.49
KOG1419 654 consensus Voltage-gated K+ channel KCNQ [Inorganic 81.05
TIGR00640132 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal 81.03
PRK03692243 putative UDP-N-acetyl-D-mannosaminuronic acid tran 80.95
TIGR02370197 pyl_corrinoid methyltransferase cognate corrinoid 80.48
PF07287362 DUF1446: Protein of unknown function (DUF1446); In 80.27
TIGR00363258 lipoprotein, YaeC family. This family of putative 80.18
PRK11480320 tauA taurine transporter substrate binding subunit 80.09
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.7e-81  Score=615.80  Aligned_cols=675  Identities=19%  Similarity=0.272  Sum_probs=560.8

Q ss_pred             cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEEc
Q 043468            6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYED   85 (720)
Q Consensus         6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~~   85 (720)
                      +++|.||+|-+.-.....+..++...++|+|+++...    +..+++..++.|+-.   .++++++.+++|.++.++|+.
T Consensus        88 s~Gv~Aifg~yd~ks~~~ltsfc~aLh~~~vtpsfp~----~~~~~Fviq~RP~l~---~al~s~i~hy~W~~fv~lyD~  160 (897)
T KOG1054|consen   88 SRGVYAIFGFYDKKSVNTLTSFCGALHVSFVTPSFPT----DGDNQFVIQMRPALK---GALLSLIDHYKWEKFVYLYDT  160 (897)
T ss_pred             hhhHhhheecccccchhhhhhhccceeeeeecccCCc----CCCceEEEEeCchHH---HHHHHHHHhcccceEEEEEcc
Confidence            4789999999999999999999999999999987632    345689999999864   899999999999999999998


Q ss_pred             CCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCCCCCCeEE
Q 043468           86 IDSSATGILPHLSDALREAGAEIIHVLALPHFPSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDYIW  165 (720)
Q Consensus        86 ~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~~~~~~~~  165 (720)
                      +.+  ...++.+-+.+.+++++|.....-...+..+|..+++.+...+.+-|++.|..+....++.++-+.+...++|++
T Consensus       161 ~rg--~s~Lqai~~~a~~~nw~VtA~~v~~~~d~~~yr~~f~~l~~r~e~rv~iDce~~~~~~il~q~i~~~k~~~~YHY  238 (897)
T KOG1054|consen  161 DRG--LSILQAIMEAAAQNNWQVTAINVGNINDVKEYRMLFEMLDRRQENRVLIDCESERRNRILLQVIELGKHVKGYHY  238 (897)
T ss_pred             cch--HHHHHHHHHHHHhcCceEEEEEcCCcccHHHHHHHHHHHhccccceEEEEcccHHHHHHHHHHHHHhhhccceEE
Confidence            765  334888888999999998777654444433699999999888888899999999999999999988887789999


Q ss_pred             EEeCcccccccccCcchhhhccccEEEEecCCCCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhHHHHHHHHH
Q 043468          166 ITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAVWSVALAM  245 (720)
Q Consensus       166 i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ydav~~~a~al  245 (720)
                      +.++..-.+.+..  .......++.++...... +|..++|+++|+.....+++.... +++...++.+|||+.+.++|+
T Consensus       239 vlaNl~f~d~dl~--~f~~g~aNitgFqivn~~-~~~~~k~~~~~~~l~~~~~~g~~~-~~~k~tsAlthDailV~~eaf  314 (897)
T KOG1054|consen  239 VLANLGFTDIDLE--RFQHGGANITGFQIVNKN-NPMVKKFIQRWKELDEREYPGASN-DPIKYTSALTHDAILVMAEAF  314 (897)
T ss_pred             EEeeCCCchhhHH--HHhcCCcceeEEEEecCC-ChHHHHHHHHHhhhcccccCCCCC-CCcchhhhhhhhHHHHHHHHH
Confidence            9988744332111  112334467777654433 589999999998766555555443 377788999999999999999


Q ss_pred             HHHHH----------------------HhHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEeecCceEEEEEEec
Q 043468          246 EQKSE----------------------KLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYRELGFWTY  303 (720)
Q Consensus       246 ~~~~~----------------------~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~~~~~~~~v~~w~~  303 (720)
                      +.+..                      ..|..+..+++++.++|++|.++||..|.|.|...+|+++..++.+++++|+.
T Consensus       315 ~~~~~q~~~~~rRG~~GD~~an~~~p~~qG~~I~ralk~v~~eGLTGniqFd~~G~R~Nyt~~i~elk~~~~rk~~~W~e  394 (897)
T KOG1054|consen  315 RSLRRQRIDISRRGNAGDCLANPAVPWEQGIDIERALKQVQVEGLTGNIQFDKYGRRTNYTIDIVELKSNGSRKVGYWNE  394 (897)
T ss_pred             HHHHHhhhchhccCCCccccCCCCCchhcchhHHHHHHheeecccccceeecccCccccceEEEEEeccCCcceeeeecc
Confidence            97753                      24678999999999999999999999999999999999999888999999999


Q ss_pred             CCCccccccCCCCccCcccccCceeeCCCCCCCCcccccCCCCCCeEEeecCCCccccceEeeeccCCCceeEEEEeHHH
Q 043468          304 GLGFSDTIIDPKYNCSSMKDLGQVFWPGAPWYTPKGWTLPAKDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIEL  383 (720)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~p~~~~~~~~~~~l~v~~~~~~p~~p~~~~~~~~~~~~~~~~G~~~dl  383 (720)
                      ..++.+..+... .+             +.       ....+.++..|.+....||..+-.. ...+.|+.++.|+|+||
T Consensus       395 ~~~fv~~~t~a~-~~-------------~d-------~~~~~n~tvvvttiL~spyvm~kkn-~~~~egn~ryEGyCvdL  452 (897)
T KOG1054|consen  395 GEGFVPGSTVAQ-SR-------------ND-------QASKENRTVVVTTILESPYVMLKKN-HEQLEGNERYEGYCVDL  452 (897)
T ss_pred             cCceeecccccc-cc-------------cc-------ccccccceEEEEEecCCchhHHHhh-HHHhcCCcccceeHHHH
Confidence            988875443211 00             00       0123456777777776776543221 23357888999999999


Q ss_pred             HHHHHHhCCCccceEEecC--------CCC-HHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccceEEEEeccc
Q 043468          384 FKALVEKLPFYLPYNFIPF--------NGS-YDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLVMIFPVQK  454 (720)
Q Consensus       384 ~~~la~~l~~~~~~~~~~~--------~~~-~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~  454 (720)
                      +.+||++.+.+|++..+++        +++ |+||++.|..|++|++++++++|.+|++.+|||.|++..+++++++||.
T Consensus       453 a~~iAkhi~~~Y~l~iv~dgkyGardaD~k~WnGMvGeLv~grAdiavApLTIt~~REeviDFSKPfMslGISIMIKKPq  532 (897)
T KOG1054|consen  453 AAEIAKHIGIKYKLFIVGDGKYGARDADTKIWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQ  532 (897)
T ss_pred             HHHHHHhcCceEEEEEecCCcccccCCCcccccchhHHHhcCccceEEeeeeeehhhhhhhccccchhhcCeEEEEeCcc
Confidence            9999999999988887743        355 9999999999999999999999999999999999999999999999998


Q ss_pred             -CCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCcc------Ccc-----cc--ccchhhhhhh---hccCC
Q 043468          455 -SGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELT------GSA-----LH--QTGTFFWLSF---NLHGE  517 (720)
Q Consensus       455 -~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~------~~~-----~~--~~~~~~~~~~---~~~g~  517 (720)
                       ..+..|+|+.|....+|+||+.+++-++++++++.|++|.+++      |..     .+  ++.+++|+++   .+||+
T Consensus       533 Ksk~gVFSFldPLa~eIWm~ivfaYiGVSvvlFLVSrFSPYEwh~Ee~~rg~~t~~~~~NeFgifNsLWFsLgAFMQQG~  612 (897)
T KOG1054|consen  533 KSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFERGRFTPSDPPNEFGIFNSLWFSLGAFMQQGC  612 (897)
T ss_pred             cCCCCeeeecchhHHHHHHHHHHHHhcceEEEEEEeccCchheeccccccCCCCCCCCCccchhhHHHHHHHHHHHhcCC
Confidence             8899999999999999999999999999999999999987753      221     12  3668999999   66787


Q ss_pred             c--ccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhh-cCCeEEEecC-----------------
Q 043468          518 K--LHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQS-SNAIIGYSRC-----------------  577 (720)
Q Consensus       518 ~--~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~-~~~~~~~~~~-----------------  577 (720)
                      .  ||+.|+|++..+||+|++||+++|||||++|||.+++.+||+|.+||.+ ..+.+|+..+                 
T Consensus       613 DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLTvErMvsPIESaEDLAkQteIaYGt~~~GSTkeFFr~Skiavy~k  692 (897)
T KOG1054|consen  613 DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEK  692 (897)
T ss_pred             CCCccccccceeccchhhhhhhhhhhhhhHHHHHHhHHhhcCcchhHHHHhhcceeeeeecCCCchHHHHhhhhHHHHHH
Confidence            6  7999999999999999999999999999999999999999999999997 4578888776                 


Q ss_pred             ----------------cchHHHHHhcCcccEEEechhHHHHHHH-hc-CCCcEeeCCeeecCceeeEecCCCCChHHHHH
Q 043468          578 ----------------LGDYASDLKSRKTGAVFLEVAEAKIFLA-KY-CKGFTVAGPTYKVGGLGFAFPKGSPLLPSVIE  639 (720)
Q Consensus       578 ----------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~-~~~l~~~~~~~~~~~~~~~~~k~s~~~~~in~  639 (720)
                                      ..|.++++++.+..++++-+..++.|.. +. |+ -..++..+.+..|+++.||+|.|+..+|.
T Consensus       693 MW~yM~SaepsVFv~t~aeGv~rVRksKGkyAfLLEsTmNey~eqRkPCD-TMKVGgNLds~GYGiATp~Gsslr~~vNL  771 (897)
T KOG1054|consen  693 MWTYMKSAEPSVFVRTTAEGVARVRKSKGKYAFLLESTMNEYIEQRKPCD-TMKVGGNLDSKGYGIATPKGSSLRNAVNL  771 (897)
T ss_pred             HHHHHhcCCcceeeehhhhHHHHHHhcCCceEeehHhhhhhhhhccCCcc-ceecccccCCcceeecCCCCcccccchhh
Confidence                            6678888888766666554444454444 44 98 56688889999999999999999999999


Q ss_pred             HHhcccccCcHHHHHHHhcCCC-CCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 043468          640 ALLKVSESGKLRELETSMIASE-KCMEVNLHDDDDISSLSPSGFWVLFVLSGGISTIALVIFLWRCNWKINENLLVNK  716 (720)
Q Consensus       640 ~i~~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~f~il~~g~~ls~~v~~~E~~~~~~~~~~~~~  716 (720)
                      +++.|.|.|+++++++||+.+. +|.....+..+....|+|..++|+||||..|+++|.++.++|++++++..+++++
T Consensus       772 AvLkL~E~G~LdKLkNKWWYDkGeC~sg~~ds~~ktsaLsLSnVAGvFYIL~gGl~laMlvALiEF~yksr~Eakr~k  849 (897)
T KOG1054|consen  772 AVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKRMK  849 (897)
T ss_pred             hhhhhcccchHHHhhhhhcccccccCCCCCCCCcchhhcchhhccceeeeehhhHHHHHHHHHHHHHHHhhHHHHhhh
Confidence            9999999999999999999987 9988655666677899999999999999999999999999999999887766655

>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor Back     alignment and domain information
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor Back     alignment and domain information
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor Back     alignment and domain information
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor Back     alignment and domain information
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor Back     alignment and domain information
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor Back     alignment and domain information
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA) Back     alignment and domain information
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor Back     alignment and domain information
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors Back     alignment and domain information
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor Back     alignment and domain information
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor Back     alignment and domain information
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily Back     alignment and domain information
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor Back     alignment and domain information
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor Back     alignment and domain information
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family Back     alignment and domain information
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor Back     alignment and domain information
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor Back     alignment and domain information
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR) Back     alignment and domain information
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors Back     alignment and domain information
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor Back     alignment and domain information
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily Back     alignment and domain information
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G Back     alignment and domain information
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor Back     alignment and domain information
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues Back     alignment and domain information
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family Back     alignment and domain information
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases Back     alignment and domain information
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family Back     alignment and domain information
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors Back     alignment and domain information
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine) Back     alignment and domain information
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional Back     alignment and domain information
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [] Back     alignment and domain information
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor Back     alignment and domain information
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family Back     alignment and domain information
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2 Back     alignment and domain information
>KOG1056 consensus Glutamate-gated metabotropic ion channel receptor subunit GRM2 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors Back     alignment and domain information
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF) Back     alignment and domain information
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family Back     alignment and domain information
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type Back     alignment and domain information
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene Back     alignment and domain information
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism] Back     alignment and domain information
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems Back     alignment and domain information
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins Back     alignment and domain information
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria Back     alignment and domain information
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway Back     alignment and domain information
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF) Back     alignment and domain information
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein Back     alignment and domain information
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family Back     alignment and domain information
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs) Back     alignment and domain information
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A Back     alignment and domain information
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins Back     alignment and domain information
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF) Back     alignment and domain information
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes Back     alignment and domain information
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides Back     alignment and domain information
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors Back     alignment and domain information
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs) Back     alignment and domain information
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system Back     alignment and domain information
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A Back     alignment and domain information
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen Back     alignment and domain information
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins Back     alignment and domain information
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family Back     alignment and domain information
>KOG1055 consensus GABA-B ion channel receptor subunit GABABR1 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors Back     alignment and domain information
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed Back     alignment and domain information
>PRK10797 glutamate and aspartate transporter subunit; Provisional Back     alignment and domain information
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C Back     alignment and domain information
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane Back     alignment and domain information
>PRK11260 cystine transporter subunit; Provisional Back     alignment and domain information
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids Back     alignment and domain information
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional Back     alignment and domain information
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems Back     alignment and domain information
>PRK15007 putative ABC transporter arginine-biding protein; Provisional Back     alignment and domain information
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed Back     alignment and domain information
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein Back     alignment and domain information
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily Back     alignment and domain information
>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional Back     alignment and domain information
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein Back     alignment and domain information
>PRK10859 membrane-bound lytic transglycosylase F; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ Back     alignment and domain information
>TIGR02285 conserved hypothetical protein Back     alignment and domain information
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] Back     alignment and domain information
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein Back     alignment and domain information
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily Back     alignment and domain information
>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins Back     alignment and domain information
>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ] Back     alignment and domain information
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown Back     alignment and domain information
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein Back     alignment and domain information
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed Back     alignment and domain information
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems Back     alignment and domain information
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein Back     alignment and domain information
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily Back     alignment and domain information
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily Back     alignment and domain information
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis Back     alignment and domain information
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily Back     alignment and domain information
>COG3107 LppC Putative lipoprotein [General function prediction only] Back     alignment and domain information
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs Back     alignment and domain information
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A Back     alignment and domain information
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines Back     alignment and domain information
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A Back     alignment and domain information
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional Back     alignment and domain information
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation Back     alignment and domain information
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily Back     alignment and domain information
>PRK10653 D-ribose transporter subunit RbsB; Provisional Back     alignment and domain information
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs Back     alignment and domain information
>TIGR01481 ccpA catabolite control protein A Back     alignment and domain information
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems Back     alignment and domain information
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria Back     alignment and domain information
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only] Back     alignment and domain information
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators Back     alignment and domain information
>COG1609 PurR Transcriptional regulators [Transcription] Back     alignment and domain information
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria Back     alignment and domain information
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems Back     alignment and domain information
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein Back     alignment and domain information
>TIGR02990 ectoine_eutA ectoine utilization protein EutA Back     alignment and domain information
>COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional Back     alignment and domain information
>PF13379 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_A 2I49_A 2I4B_A 2I48_A 3QSL_A Back     alignment and domain information
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR Back     alignment and domain information
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors Back     alignment and domain information
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria Back     alignment and domain information
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism Back     alignment and domain information
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia Back     alignment and domain information
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional Back     alignment and domain information
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs Back     alignment and domain information
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs Back     alignment and domain information
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily Back     alignment and domain information
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli Back     alignment and domain information
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR) Back     alignment and domain information
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>PRK14987 gluconate operon transcriptional regulator; Provisional Back     alignment and domain information
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor Back     alignment and domain information
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily Back     alignment and domain information
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species Back     alignment and domain information
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism Back     alignment and domain information
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems Back     alignment and domain information
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs Back     alignment and domain information
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs Back     alignment and domain information
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK09526 lacI lac repressor; Reviewed Back     alignment and domain information
>PRK09701 D-allose transporter subunit; Provisional Back     alignment and domain information
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation Back     alignment and domain information
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional Back     alignment and domain information
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional Back     alignment and domain information
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs Back     alignment and domain information
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>PRK10423 transcriptional repressor RbsR; Provisional Back     alignment and domain information
>PRK15408 autoinducer 2-binding protein lsrB; Provisional Back     alignment and domain information
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>PRK09492 treR trehalose repressor; Provisional Back     alignment and domain information
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea Back     alignment and domain information
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional Back     alignment and domain information
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli Back     alignment and domain information
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional Back     alignment and domain information
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT Back     alignment and domain information
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional Back     alignment and domain information
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region Back     alignment and domain information
>PF03466 LysR_substrate: LysR substrate binding domain; InterPro: IPR005119 The structure of this domain is known and is similar to the periplasmic binding proteins [] Back     alignment and domain information
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species Back     alignment and domain information
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial Back     alignment and domain information
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family Back     alignment and domain information
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family Back     alignment and domain information
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein Back     alignment and domain information
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional Back     alignment and domain information
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria Back     alignment and domain information
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional Back     alignment and domain information
>PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A Back     alignment and domain information
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A Back     alignment and domain information
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins Back     alignment and domain information
>PF12727 PBP_like: PBP superfamily domain; InterPro: IPR024370 This entry represents members of the periplasmic binding domain superfamily [] Back     alignment and domain information
>TIGR00035 asp_race aspartate racemase Back     alignment and domain information
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein Back     alignment and domain information
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability Back     alignment and domain information
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C Back     alignment and domain information
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family Back     alignment and domain information
>PF14503 YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B Back     alignment and domain information
>cd05466 PBP2_LTTR_substrate The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily Back     alignment and domain information
>TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein Back     alignment and domain information
>PRK09860 putative alcohol dehydrogenase; Provisional Back     alignment and domain information
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain Back     alignment and domain information
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional Back     alignment and domain information
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain Back     alignment and domain information
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional Back     alignment and domain information
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family Back     alignment and domain information
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length Back     alignment and domain information
>TIGR00363 lipoprotein, YaeC family Back     alignment and domain information
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query720
3kg2_A823 Ampa Subtype Ionotropic Glutamate Receptor In Compl 5e-11
4f11_A433 Crystal Structure Of The Extracellular Domain Of Hu 1e-09
3qlt_A395 Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge H 2e-05
3h6g_A395 Crystal Structure Of The Glur6 Amino Terminal Domai 2e-05
3mq4_A481 Metabotropic Glutamate Receptor Mglur7 Complexed Wi 1e-04
2e4z_A501 Crystal Structure Of The Ligand-Binding Region Of T 2e-04
3om0_A393 Crystal Structure Of The Gluk5 (Ka2) Atd Crystallog 2e-04
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With Competitive Antagonist Zk 200775 Length = 823 Back     alignment and structure 
Iteration: 1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 136/357 (38%), Gaps = 59/357 (16%)
Query: 406 YDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGL-VMIFPVQKSGNKTLLFLK 464
           ++ +V +L        +  + I   R +  DF+ P+   G+ +MI   QKS      FL 
Sbjct: 451 WNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLD 510
Query: 465 PFTRAVWILVAVISIYNGFVVWLIERN-----HWPEL-------TGSALHQTGTF--FWL 510
           P    +W+ +    I    V++L+ R      H  E        +  + ++ G F   W 
Sbjct: 511 PLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWF 570
Query: 511 S---FNLHGEKL--HSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETL 565
           S   F   G  +   S   R+   VW F  L+I  +YTANL + LT   +   + + E L
Sbjct: 571 SLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDL 630
Query: 566 QSSNAIIGYSRCLGDYASDLKSRKTGAVF------LEVAEAKIFLAKYCKGFTVAGP--- 616
            S    I Y         +   R   AVF      +  AE  +F+    +G         
Sbjct: 631 -SKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKG 689
Query: 617 ---------------------TYKVG------GLGFAFPKGSPLLPSVIEALLKVSESGK 649
                                T KVG      G G A PKGS L   V  A+LK+SE G 
Sbjct: 690 KYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGL 749
Query: 650 LRELETSMIASE-KCMEVNLHDDDDISSLSPSGF-WVLFVLSGGISTIALVIFLWRC 704
           L +L+      + +C   +    +  S+LS S    V ++L GG+    LV  +  C
Sbjct: 750 LDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFC 806
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human Gaba(B) Receptor Gbr2 Length = 433 Back     alignment and structure
>pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge Homodimer Assembly Length = 395 Back     alignment and structure
>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer Assembly Length = 395 Back     alignment and structure
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With Ly3414 Antagonist Length = 481 Back     alignment and structure
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The Group Iii Metabotropic Glutamate Receptor Length = 501 Back     alignment and structure
>pdb|3OM0|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Crystallographic Dimer At 1.4 Angstrom Resolution Length = 393 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query720
3kg2_A823 Glutamate receptor 2; ION channel, membrane protei 1e-135
3h6g_A395 Glutamate receptor, ionotropic kainate 2; membrane 3e-63
4f11_A433 Gamma-aminobutyric acid type B receptor subunit 2; 4e-61
3om0_A393 Glutamate receptor, ionotropic kainate 5; membrane 7e-60
3o21_A389 Glutamate receptor 3; periplasmatic binding protei 4e-55
3hsy_A376 Glutamate receptor 2; ligand-gated ION channel, sy 5e-54
3saj_A384 Glutamate receptor 1; rossman fold, ION channel, m 1e-52
3qel_B364 Glutamate [NMDA] receptor subunit epsilon-2; ION c 5e-49
1jdp_A441 NPR-C, atrial natriuretic peptide clearance recept 3e-46
3qek_A384 NMDA glutamate receptor subunit; amino terminal do 8e-42
1dp4_A435 Atrial natriuretic peptide receptor A; periplasmic 2e-37
1yae_A312 Glutamate receptor, ionotropic kainate 2; kainate 1e-16
4eyg_A368 Twin-arginine translocation pathway signal; PSI-bi 1e-16
4evq_A375 Putative ABC transporter subunit, substrate-bindi 5e-16
3h5l_A419 Putative branched-chain amino acid ABC transporter 7e-15
3i45_A387 Twin-arginine translocation pathway signal protei; 3e-14
4f06_A371 Extracellular ligand-binding receptor; PSI-biology 6e-14
3lop_A364 Substrate binding periplasmic protein; protein str 2e-13
3n0w_A379 ABC branched chain amino acid family transporter, 2e-13
3mq4_A481 Mglur7, metabotropic glutamate receptor 7; glutama 4e-13
1usg_A346 Leucine-specific binding protein; leucine-binding 8e-13
2v3u_A265 Glutamate receptor delta-2 subunit; postsynaptic m 1e-12
3sm9_A479 Mglur3, metabotropic glutamate receptor 3; structu 2e-12
3ipc_A356 ABC transporter, substrate binding protein (amino; 2e-12
3ks9_A496 Mglur1, metabotropic glutamate receptor 1; glutama 4e-12
2e4u_A555 Metabotropic glutamate receptor 3; G-protein-coupl 8e-12
3n0x_A374 Possible substrate binding protein of ABC transpo 2e-11
3eaf_A391 ABC transporter, substrate binding protein; PSI2, 3e-11
3i09_A375 Periplasmic branched-chain amino acid-binding Pro; 8e-11
1pea_A385 Amidase operon; gene regulator, receptor, binding 1e-09
3td9_A366 Branched chain amino acid ABC transporter, peripl 6e-09
3td9_A366 Branched chain amino acid ABC transporter, peripl 1e-04
3hut_A358 Putative branched-chain amino acid ABC transporter 8e-09
3hut_A358 Putative branched-chain amino acid ABC transporter 2e-05
3lkb_A392 Probable branched-chain amino acid ABC transporter 6e-08
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 3e-07
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 1e-06
1mqi_A263 Glutamate receptor 2; GLUR2, ligand binding core, 3e-07
1mqi_A263 Glutamate receptor 2; GLUR2, ligand binding core, 8e-05
1pb7_A292 N-methyl-D-aspartate receptor subunit 1; ligand bi 2e-06
1pb7_A292 N-methyl-D-aspartate receptor subunit 1; ligand bi 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
3snr_A362 Extracellular ligand-binding receptor; structural 4e-06
3snr_A362 Extracellular ligand-binding receptor; structural 5e-06
2rc8_A294 Glutamate [NMDA] receptor subunit 3A; membrane pro 1e-05
2rc8_A294 Glutamate [NMDA] receptor subunit 3A; membrane pro 5e-04
3mpk_A267 Virulence sensor protein BVGS; venus flytrap, sens 1e-05
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 3e-05
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 3e-05
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 5e-04
2a5s_A284 N-methyl-D-aspartate receptor nmdar2A subunit, NMD 5e-05
2a5s_A284 N-methyl-D-aspartate receptor nmdar2A subunit, NMD 2e-04
3sg0_A386 Extracellular ligand-binding receptor; structural 8e-05
3sg0_A386 Extracellular ligand-binding receptor; structural 8e-05
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 2e-04
4eq9_A246 ABC transporter substrate-binding protein-amino A 3e-04
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 6e-04
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Length = 823 Back     alignment and structure
 Score =  418 bits (1076), Expect = e-135
 Identities = 123/808 (15%), Positives = 251/808 (31%), Gaps = 132/808 (16%)

Query: 2   DLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQL 61
               S+ V AI G    +  +++        +  ++ +  T        PF++Q   +  
Sbjct: 55  SQF-SRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDG----THPFVIQMRPDL- 108

Query: 62  AQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFPSSR 121
               A+ ++++ ++W +   +Y+         L  + D+  E   ++  +         +
Sbjct: 109 --KGALLSLIEYYQWDKFAYLYDSDRG--LSTLQAVLDSAAEKKWQVTAINVGNINNDKK 164

Query: 122 ---LSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDYIWITTDAFTSLVHSI 178
                   + L+  + R  ++    +    + ++   +    K Y +I  +   +    +
Sbjct: 165 DETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLL 224

Query: 179 NTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAV 238
                 +   + G +    +D      F +R+      EYP           +  TYDAV
Sbjct: 225 KIQFGGAE--VSGFQIVDYDD-SLVSKFIERWSTLEEKEYPGAHT-ATIKYTSALTYDAV 280

Query: 239 WSVALAMEQ----------------------KSEKLNQKLLRRILLSDFDGLTGKVEFMN 276
             +  A                                ++ R +     +GL+G ++F  
Sbjct: 281 QVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQ 340

Query: 277 QKVAPAHTYQIINLMGKSYRELGFWTYGLGFSDTIIDPKYNCSSMKDLGQVFWPGAPWYT 336
                 +T  I+ L     R++G+W+       T  +   +    K +       +P+  
Sbjct: 341 NGKRINYTINIMELKTNGPRKIGYWSEVDKMVLT--EDDTSGLEQKTVVVTTILESPY-- 396

Query: 337 PKGWTLPAKDQPLRIGVPIGSEFQQYVNVEYDELRNFTYFGGFSIELFKALVEKLPFYLP 396
                                     +   +  L     + G+ ++L   + +   F   
Sbjct: 397 ------------------------VMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYK 432

Query: 397 YNFIPF---------NGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESGLV 447
              +              ++ +V +L        +  + I   R +  DF+ P+   G+ 
Sbjct: 433 LTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGIS 492

Query: 448 MIFPVQKSGNKTLL-FLKPFTRAVWILVAVISIYNGFVVWLIER--------------NH 492
           ++    +     +  FL P    +W+ +    I    V++L+ R                
Sbjct: 493 IMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRE 552

Query: 493 WPELTGSALHQTGTFFWLSF----NLHGEKLHSNLS-RMTTLVWLFVALVISQTYTANLT 547
                 +         W S         +    +LS R+   VW F  L+I  +YTANL 
Sbjct: 553 TQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLA 612

Query: 548 SMLTARGLEPTVNNIETLQSSNAI-IGY--------------------------SRCLGD 580
           + LT   +   + + E L     I  G                           S     
Sbjct: 613 AFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSV 672

Query: 581 YASD--------LKSRKTGAVFLEVAEAKIFLAKYCKGFTVAGPTYKVGGLGFAFPKGSP 632
           +            KS+   A  LE    +    +        G      G G A PKGS 
Sbjct: 673 FVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSS 732

Query: 633 LLPSVIEALLKVSESGKLRELETSMIASE-KCMEVNLHDDDDISSLSPSGFWVLFVLSGG 691
           L   V  A+LK+SE G L +L+      + +C   +    +  S+LS S    +F +  G
Sbjct: 733 LGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVG 792

Query: 692 ISTIALVIFLWRCNWKINENLLVNKKIR 719
              +A+++ L    +K        K + 
Sbjct: 793 GLGLAMLVALIEFCYKSRAEAKRMKGLV 820
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* Length = 395 Back     alignment and structure
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* Length = 433 Back     alignment and structure
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A Length = 393 Back     alignment and structure
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A Length = 389 Back     alignment and structure
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A Length = 376 Back     alignment and structure
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} Length = 384 Back     alignment and structure
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A* Length = 364 Back     alignment and structure
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Length = 441 Back     alignment and structure
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A* Length = 384 Back     alignment and structure
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* Length = 435 Back     alignment and structure
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Length = 312 Back     alignment and structure
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A* Length = 368 Back     alignment and structure
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A Length = 375 Back     alignment and structure
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} Length = 419 Back     alignment and structure
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum} Length = 387 Back     alignment and structure
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A* Length = 371 Back     alignment and structure
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} Length = 364 Back     alignment and structure
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans} Length = 379 Back     alignment and structure
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} PDB: 2e4z_A* Length = 481 Back     alignment and structure
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A Length = 346 Back     alignment and structure
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Length = 265 Back     alignment and structure
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens} Length = 479 Back     alignment and structure
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A Length = 356 Back     alignment and structure
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A* Length = 496 Back     alignment and structure
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* Length = 555 Back     alignment and structure
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B Length = 374 Back     alignment and structure
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} Length = 391 Back     alignment and structure
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} Length = 375 Back     alignment and structure
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A Length = 385 Back     alignment and structure
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima} Length = 366 Back     alignment and structure
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima} Length = 366 Back     alignment and structure
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} Length = 358 Back     alignment and structure
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} Length = 358 Back     alignment and structure
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} Length = 392 Back     alignment and structure
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Length = 259 Back     alignment and structure
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Length = 259 Back     alignment and structure
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Length = 263 Back     alignment and structure
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Length = 263 Back     alignment and structure
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Length = 292 Back     alignment and structure
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Length = 292 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Length = 294 Back     alignment and structure
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Length = 294 Back     alignment and structure
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Length = 267 Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Length = 259 Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Length = 249 Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Length = 249 Back     alignment and structure
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Length = 284 Back     alignment and structure
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Length = 284 Back     alignment and structure
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A* Length = 386 Back     alignment and structure
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A* Length = 386 Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Length = 228 Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Length = 246 Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Length = 233 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query720
3kg2_A823 Glutamate receptor 2; ION channel, membrane protei 100.0
4f11_A433 Gamma-aminobutyric acid type B receptor subunit 2; 100.0
3o21_A389 Glutamate receptor 3; periplasmatic binding protei 100.0
3hsy_A376 Glutamate receptor 2; ligand-gated ION channel, sy 100.0
3saj_A384 Glutamate receptor 1; rossman fold, ION channel, m 100.0
1jdp_A441 NPR-C, atrial natriuretic peptide clearance recept 100.0
3h6g_A395 Glutamate receptor, ionotropic kainate 2; membrane 100.0
3om0_A393 Glutamate receptor, ionotropic kainate 5; membrane 100.0
1dp4_A435 Atrial natriuretic peptide receptor A; periplasmic 100.0
4gpa_A389 Glutamate receptor 4; PBP fold, ligand-gated ION c 100.0
2e4u_A555 Metabotropic glutamate receptor 3; G-protein-coupl 100.0
3qek_A384 NMDA glutamate receptor subunit; amino terminal do 100.0
3sm9_A479 Mglur3, metabotropic glutamate receptor 3; structu 100.0
3ks9_A496 Mglur1, metabotropic glutamate receptor 1; glutama 100.0
3td9_A366 Branched chain amino acid ABC transporter, peripl 99.98
4f06_A371 Extracellular ligand-binding receptor; PSI-biology 99.98
3i09_A375 Periplasmic branched-chain amino acid-binding Pro; 99.98
3i45_A387 Twin-arginine translocation pathway signal protei; 99.97
3ipc_A356 ABC transporter, substrate binding protein (amino; 99.97
3n0w_A379 ABC branched chain amino acid family transporter, 99.97
3mq4_A481 Mglur7, metabotropic glutamate receptor 7; glutama 99.97
4evq_A375 Putative ABC transporter subunit, substrate-bindi 99.97
3h5l_A419 Putative branched-chain amino acid ABC transporter 99.97
3qel_B364 Glutamate [NMDA] receptor subunit epsilon-2; ION c 99.97
3hut_A358 Putative branched-chain amino acid ABC transporter 99.97
4eyg_A368 Twin-arginine translocation pathway signal; PSI-bi 99.97
1usg_A346 Leucine-specific binding protein; leucine-binding 99.97
3lkb_A392 Probable branched-chain amino acid ABC transporter 99.97
4gnr_A353 ABC transporter substrate-binding protein-branche 99.96
3eaf_A391 ABC transporter, substrate binding protein; PSI2, 99.96
3lop_A364 Substrate binding periplasmic protein; protein str 99.96
3n0x_A374 Possible substrate binding protein of ABC transpo 99.96
3snr_A362 Extracellular ligand-binding receptor; structural 99.96
3sg0_A386 Extracellular ligand-binding receptor; structural 99.96
1pea_A385 Amidase operon; gene regulator, receptor, binding 99.95
1yae_A312 Glutamate receptor, ionotropic kainate 2; kainate 99.92
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 99.91
1pb7_A292 N-methyl-D-aspartate receptor subunit 1; ligand bi 99.9
2rc8_A294 Glutamate [NMDA] receptor subunit 3A; membrane pro 99.9
4gvo_A243 LMO2349 protein; structural genomics, IDP05245, L- 99.9
2a5s_A284 N-methyl-D-aspartate receptor nmdar2A subunit, NMD 99.89
3ckm_A327 YRAM (HI1655), LPOA; periplasmic-binding protein, 99.89
2h4a_A325 YRAM (HI1655); perplasmic binding protein, lipopro 99.88
4h5g_A243 Amino acid ABC superfamily ATP binding cassette tr 99.88
2v3u_A265 Glutamate receptor delta-2 subunit; postsynaptic m 99.87
3k4u_A245 Binding component of ABC transporter; structural g 99.85
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 99.85
3kzg_A237 Arginine 3RD transport system periplasmic binding 99.85
1mqi_A263 Glutamate receptor 2; GLUR2, ligand binding core, 99.84
3i6v_A232 Periplasmic His/Glu/Gln/Arg/opine family-binding; 99.84
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 99.84
3hv1_A268 Polar amino acid ABC uptake transporter substrate 99.83
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 99.83
3del_B242 Arginine binding protein; alpha and beta protein ( 99.82
3tql_A227 Arginine-binding protein; transport and binding pr 99.82
4eq9_A246 ABC transporter substrate-binding protein-amino A 99.82
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 99.81
3mpk_A267 Virulence sensor protein BVGS; venus flytrap, sens 99.8
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 99.79
1lst_A239 Lysine, arginine, ornithine-binding protein; amino 99.79
2y7i_A229 STM4351; arginine-binding protein; HET: ARG; 1.90A 99.79
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 99.79
2iee_A271 ORF2, probable ABC transporter extracellular-bindi 99.79
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 99.79
2q88_A257 EHUB, putative ABC transporter amino acid-binding 99.75
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 99.75
2yln_A283 Putative ABC transporter, periplasmic binding Pro 99.74
4i62_A269 Amino acid ABC transporter, periplasmic amino ACI 99.74
2vha_A287 Periplasmic binding transport protein; periplasmic 99.73
3qax_A268 Probable ABC transporter arginine-binding protein; 99.73
1xt8_A292 Putative amino-acid transporter periplasmic solut 99.73
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 99.72
2v25_A259 Major cell-binding factor; antigen, adhesin, aspar 99.59
3n5l_A310 Binding protein component of ABC phosphonate TRAN; 98.67
3p7i_A321 PHND, subunit of alkylphosphonate ABC transporter; 98.59
2ozz_A231 Hypothetical protein YHFZ; alpha-beta structure, s 98.49
2h3h_A313 Sugar ABC transporter, periplasmic sugar-binding p 97.28
3uif_A348 Sulfonate ABC transporter, periplasmic sulfonate- 97.22
3ksx_A324 Nitrate transport protein; SSUA, alkanesulfonate-b 97.18
3un6_A341 Hypothetical protein saouhsc_00137; structural gen 97.14
2rjo_A332 Twin-arginine translocation pathway signal protei; 97.11
2x26_A308 Periplasmic aliphatic sulphonates-binding protein; 97.11
2h0a_A276 TTHA0807, transcriptional regulator; repressor, st 96.95
3o74_A272 Fructose transport system repressor FRUR; dual tra 96.91
3brs_A289 Periplasmic binding protein/LACI transcriptional; 96.82
2f5x_A312 BUGD; periplasmic binding protein, transport prote 96.81
3rot_A297 ABC sugar transporter, periplasmic sugar binding; 96.78
1tjy_A316 Sugar transport protein; protein-ligand complex, s 96.75
3c3k_A285 Alanine racemase; structural genomics, protein str 96.74
2iks_A293 DNA-binding transcriptional dual regulator; escher 96.72
3l49_A291 ABC sugar (ribose) transporter, periplasmic substr 96.71
3k9c_A289 Transcriptional regulator, LACI family protein; PS 96.7
3hcw_A295 Maltose operon transcriptional repressor; RNA-bind 96.69
3gv0_A288 Transcriptional regulator, LACI family; transcript 96.65
2x7x_A325 Sensor protein; transferase, sensor histidine kina 96.63
2fn9_A290 Ribose ABC transporter, periplasmic ribose-bindin; 96.58
3brq_A296 HTH-type transcriptional regulator ASCG; transcrip 96.58
2dvz_A314 BUGE, putative exported protein; periplamsic bindi 96.58
2fvy_A309 D-galactose-binding periplasmic protein; periplasm 96.57
2qpq_A301 Protein BUG27; alpha/beta domain, venus flytrap, t 96.53
2qu7_A288 Putative transcriptional regulator; structural gen 96.52
3g1w_A305 Sugar ABC transporter; sugar-binding protein, baci 96.47
2ioy_A283 Periplasmic sugar-binding protein; ribose binding 96.46
3bbl_A287 Regulatory protein of LACI family; protein structu 96.45
3cs3_A277 Sugar-binding transcriptional regulator, LACI FAM; 96.44
3ksm_A276 ABC-type sugar transport system, periplasmic COMP; 96.44
3qsl_A346 Putative exported protein; unknown, structural gen 96.43
1dbq_A289 Purine repressor; transcription regulation, DNA-bi 96.42
3h75_A350 Periplasmic sugar-binding domain protein; protein 96.4
3d8u_A275 PURR transcriptional regulator; APC91343.1, vibrio 96.36
3egc_A291 Putative ribose operon repressor; structural genom 96.32
3o1i_D304 Periplasmic protein TORT; ligand free, two compone 96.32
3m9w_A313 D-xylose-binding periplasmic protein; xylose bindi 96.31
3gyb_A280 Transcriptional regulators (LACI-family transcript 96.28
3lft_A295 Uncharacterized protein; ABC, ATPase, cassette, L- 96.25
3dbi_A338 Sugar-binding transcriptional regulator, LACI FAM; 96.24
3clk_A290 Transcription regulator; 11017J, PSI-II, NYSGXRC, 96.23
3k4h_A292 Putative transcriptional regulator; structural gen 96.21
3qk7_A294 Transcriptional regulators; structural genomics, N 96.2
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 96.14
3d02_A303 Putative LACI-type transcriptional regulator; peri 96.13
1jx6_A342 LUXP protein; protein-ligand complex, signaling pr 96.13
2fep_A289 Catabolite control protein A; CCPA, transcriptiona 96.1
2hsg_A332 Glucose-resistance amylase regulator; CCPA, transc 96.07
3g85_A289 Transcriptional regulator (LACI family); transcrip 96.07
2rgy_A290 Transcriptional regulator, LACI family; 11011J, NY 96.07
3l6u_A293 ABC-type sugar transport system periplasmic compo; 96.04
3ix1_A302 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine 95.88
3gbv_A304 Putative LACI-family transcriptional regulator; NY 95.88
2o20_A332 Catabolite control protein A; CCPA, transcriptiona 95.85
4fe7_A412 Xylose operon regulatory protein; HTH_ARAC, helix- 95.8
3tb6_A298 Arabinose metabolism transcriptional repressor; tr 95.71
2vk2_A306 YTFQ, ABC transporter periplasmic-binding protein 95.69
2dri_A271 D-ribose-binding protein; sugar transport; HET: RI 95.68
1byk_A255 Protein (trehalose operon repressor); LACI family, 95.56
3e3m_A355 Transcriptional regulator, LACI family; structural 95.54
1gud_A288 ALBP, D-allose-binding periplasmic protein; peripl 95.51
2qh8_A302 Uncharacterized protein; conserved domain protein, 95.38
3kjx_A344 Transcriptional regulator, LACI family; LACL famil 95.34
3e61_A277 Putative transcriptional repressor of ribose OPER; 95.3
3huu_A305 Transcription regulator like protein; PSI-II, NYSG 95.24
2fqx_A318 Membrane lipoprotein TMPC; ABC transport system, l 95.23
3kke_A303 LACI family transcriptional regulator; structural 95.21
3ctp_A330 Periplasmic binding protein/LACI transcriptional; 95.2
3hs3_A277 Ribose operon repressor; PSI-II, NYSGXRC, periplas 95.16
1qpz_A340 PURA, protein (purine nucleotide synthesis repress 95.13
3ixl_A240 Amdase, arylmalonate decarboxylase; enantioselecti 95.11
3h5o_A339 Transcriptional regulator GNTR; transcription regu 95.0
3jy6_A276 Transcriptional regulator, LACI family; NYSGXRC, P 94.99
3jvd_A333 Transcriptional regulators; structural genomics, P 94.93
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 94.91
3lkv_A302 Uncharacterized conserved domain protein; ATPase b 94.66
2a9h_A155 Voltage-gated potassium channel; potassium channel 94.6
3bil_A348 Probable LACI-family transcriptional regulator; st 94.32
8abp_A306 L-arabinose-binding protein; binding proteins; HET 94.17
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 94.1
3h5t_A366 Transcriptional regulator, LACI family; DNA-depend 93.75
1jye_A349 Lactose operon repressor; gene regulation, protein 93.36
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 93.13
3miz_A301 Putative transcriptional regulator protein, LACI f 92.66
2g29_A417 Nitrate transport protein NRTA; solute-binding pro 92.18
2hqb_A296 Transcriptional activator of COMK gene; berkeley s 91.97
3uug_A330 Multiple sugar-binding periplasmic receptor CHVE; 91.53
2x7q_A321 Ca3427, possible thiamine biosynthesis enzyme; unk 91.22
4ddd_A327 Immunogenic protein; ssgcid, structural genomics, 91.16
1p7b_A333 Integral membrane channel and cytosolic domains; t 90.32
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 90.32
3qi7_A371 Putative transcriptional regulator; periplasmic bi 90.2
3s99_A356 Basic membrane lipoprotein; ssgcid, structural gen 89.45
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 89.43
3ouf_A97 Potassium channel protein; ION channel, membrane, 88.79
2dgd_A223 223AA long hypothetical arylmalonate decarboxylas; 88.51
2q67_A114 Potassium channel protein; inverted teepee, helix 87.45
4dik_A410 Flavoprotein; TM0755, electron transport, DI-iron 87.15
1xl4_A301 Inward rectifier potassium channel; integral membr 86.99
2zzv_A361 ABC transporter, solute-binding protein; periplasm 86.73
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 85.33
1zbm_A280 Hypothetical protein AF1704; alpha-beta protein, s 85.1
2hzl_A365 Trap-T family sorbitol/mannitol transporter, perip 84.19
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 84.02
2pfy_A301 Putative exported protein; extracytoplasmic solute 83.26
2q5c_A196 NTRC family transcriptional regulator; structural 82.12
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 81.48
3oxn_A241 Putative transcriptional regulator, LYSR family; s 81.24
2pfz_A301 Putative exported protein; extracytoplasmic solute 80.78
2i49_A429 Bicarbonate transporter; alpha-beta protein, C-cla 80.65
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=1.5e-85  Score=767.61  Aligned_cols=669  Identities=19%  Similarity=0.258  Sum_probs=549.6

Q ss_pred             ccccCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccccCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEE
Q 043468            3 LMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWATERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVI   82 (720)
Q Consensus         3 Li~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii   82 (720)
                      |+ +++|.|||||.+|+.+.+++++++.+++|+|+++.  +..  ..++|+||+.|+   ++.+++++++++||++|++|
T Consensus        56 l~-~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~~~--~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii  127 (823)
T 3kg2_A           56 QF-SRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSF--PTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYL  127 (823)
T ss_dssp             HH-HTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSC--CCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEE
T ss_pred             HH-hcCcEEEEcCCChhHHHHHHHHhhcCCCceeeccc--CCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEE
Confidence            45 46899999999999999999999999999999843  222  357899999999   78999999999999999999


Q ss_pred             EEcCCCcccCcHHHHHHHHHHcCcEEEEEEecCCC----CcccHHHHHHHhhcCCCeEEEEEcCHHHHHHHHHHHHHcCC
Q 043468           83 YEDIDSSATGILPHLSDALREAGAEIIHVLALPHF----PSSRLSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKM  158 (720)
Q Consensus        83 ~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~~d~~~~l~~i~~~~~~vvil~~~~~~~~~~l~~a~~~g~  158 (720)
                      | |+++|... .+.+++.+++.|++|+..+.++.+    +. |+.+++++|+++++|+|++++..+++..++++|+++|+
T Consensus       128 ~-d~~~g~~~-~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~  204 (823)
T 3kg2_A          128 Y-DSDRGLST-LQAVLDSAAEKKWQVTAINVGNINNDKKDE-TYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGK  204 (823)
T ss_dssp             E-CGGGCTHH-HHHHHHHHHHTTCEEEEEECSSCCSSSTTT-TTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTT
T ss_pred             E-eCChhHHH-HHHHHHHhhccCCceEEEEeecCCCCccch-hHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCc
Confidence            9 56667655 999999999999999999887765    44 99999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEeCcccccccccCcchhhhccccEEEEecCCCCChhHHHHHHHHHHHhcccCCCCCCCCCCCchhhhHhhHH
Q 043468          159 MEKDYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPGALAVQTYDAV  238 (720)
Q Consensus       159 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ydav  238 (720)
                      .++.++|+.++........ . .......|++++..+.++ +|..++|.++|+++++..++..... .++.+++.+||||
T Consensus       205 ~~~~~~~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~-~~~~~a~~~YDAv  280 (823)
T 3kg2_A          205 HVKGYHYIIANLGFTDGDL-L-KIQFGGAEVSGFQIVDYD-DSLVSKFIERWSTLEEKEYPGAHTA-TIKYTSALTYDAV  280 (823)
T ss_dssp             TBTTCEEEECSSBSSSSCC-S-SSSSSBCEEEEEESSCTT-SHHHHHHHHHHTTSCTTTSTTCCSS-CCCHHHHHHHHHH
T ss_pred             CCCCeEEEEecccccccch-H-HhhcCCCCceEeeeecCC-chHHHHHHHHHHhhcccccCCCCcc-ccchhhHHHHHHH
Confidence            9888999999854332211 1 112334457777655444 6999999999998887654433222 5778899999999


Q ss_pred             HHHHHHHHHHHH----------------------HhHHHHHHHHHcccccCceeeEEEecCCcCCCCeEEEEEeecCceE
Q 043468          239 WSVALAMEQKSE----------------------KLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAHTYQIINLMGKSYR  296 (720)
Q Consensus       239 ~~~a~al~~~~~----------------------~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~i~~~~~~~~~  296 (720)
                      +++++|+++++.                      .+++.+.++|++++|+|++|+++||++|++.+..++|++++++++.
T Consensus       281 ~~la~Al~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~  360 (823)
T 3kg2_A          281 QVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPR  360 (823)
T ss_dssp             HHHHHHHHHHHTTTCCCCCSSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEE
T ss_pred             HHHHHHHHHHHhhccccccCCCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCe
Confidence            999999999764                      4788999999999999999999999999998899999999999999


Q ss_pred             EEEEEecCCCccccccCCCCccCcccccCceeeCCCCCCCCcccccCCCCCCeEEeecCCCccccceEeee--ccCCCce
Q 043468          297 ELGFWTYGLGFSDTIIDPKYNCSSMKDLGQVFWPGAPWYTPKGWTLPAKDQPLRIGVPIGSEFQQYVNVEY--DELRNFT  374 (720)
Q Consensus       297 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~p~~~~~~~~~~~l~v~~~~~~p~~p~~~~~~--~~~~~~~  374 (720)
                      .||.|++..++.....                         .  ....++++|+|++...+||.   +...  ++.++++
T Consensus       361 ~vg~w~~~~g~~~~~~-------------------------~--~~~~~~~~l~v~~~~~~P~~---~~~~~~~~~~~~~  410 (823)
T 3kg2_A          361 KIGYWSEVDKMVLTED-------------------------D--TSGLEQKTVVVTTILESPYV---MMKANHAALAGNE  410 (823)
T ss_dssp             EEEEEETTTEEEECCC-------------------------C--CSSCCCCCEEEEECCCTTTS---EECTTGGGCCGGG
T ss_pred             eEEEEcCCCCceeccC-------------------------c--ccccCCCEEEEEEecCCCcE---EEecCccccCCCC
Confidence            9999999877653210                         0  12356899999997766664   4321  2234567


Q ss_pred             eEEEEeHHHHHHHHHhCCCccceEEec---------CCCCHHHHHHHHHhCCccEEeeeeeeeccceeeeeecccccccc
Q 043468          375 YFGGFSIELFKALVEKLPFYLPYNFIP---------FNGSYDDLVKQLYLNNFAGVVGDVAIVARRCQYADFTHPYTESG  445 (720)
Q Consensus       375 ~~~G~~~dl~~~la~~l~~~~~~~~~~---------~~~~~~~~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~  445 (720)
                      ++.|+++|+++++++++||++++..++         .+|+|++++++|.+|++|++++++++|++|.+.++||.||+..+
T Consensus       411 ~~~G~~~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~  490 (823)
T 3kg2_A          411 RYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLG  490 (823)
T ss_dssp             GEESHHHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEEC
T ss_pred             ceEEEHHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCC
Confidence            999999999999999999999988876         24679999999999999999999999999999999999999999


Q ss_pred             eEEEEeccc-CCCcccccccccchhHHHHHHHHHHHHhhheeeeecccCCCccCcc--------------ccccchhhhh
Q 043468          446 LVMIFPVQK-SGNKTLLFLKPFTRAVWILVAVISIYNGFVVWLIERNHWPELTGSA--------------LHQTGTFFWL  510 (720)
Q Consensus       446 ~~~~v~~~~-~~~~~~~~~~pf~~~~W~~i~~~~~~~~~~~~~~~r~~~~~~~~~~--------------~~~~~~~~~~  510 (720)
                      .++++|++. ..++++.|+.||++.+|++++++++++++++|++.|+++.++....              ...+.+++|+
T Consensus       491 ~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (823)
T 3kg2_A          491 ISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWF  570 (823)
T ss_dssp             EEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHH
T ss_pred             EEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHH
Confidence            999999987 5678899999999999999999999999999999997654432211              1235688999


Q ss_pred             hh---hccCCc--ccccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCCCCChHHhhhc-CCeEEEecC-------
Q 043468          511 SF---NLHGEK--LHSNLSRMTTLVWLFVALVISQTYTANLTSMLTARGLEPTVNNIETLQSS-NAIIGYSRC-------  577 (720)
Q Consensus       511 ~~---~~~g~~--~~~~~~R~~~~~~~l~~~ii~~~y~a~L~s~l~~~~~~~~i~s~~dl~~~-~~~~~~~~~-------  577 (720)
                      ++   ++||..  |++.++|+++++||++++|++++|+|+|+++||.+++.++|+|++||.++ ++++++..+       
T Consensus       571 ~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~  650 (823)
T 3kg2_A          571 SLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFF  650 (823)
T ss_dssp             TTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHH
T ss_pred             HHHHHHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHH
Confidence            99   555553  78999999999999999999999999999999999999999999999985 477876543       


Q ss_pred             --------------------------cchHHHHHh-cCcccEEEechhHHHHHHHhc-CCCcEeeCCeeecCceeeEecC
Q 043468          578 --------------------------LGDYASDLK-SRKTGAVFLEVAEAKIFLAKY-CKGFTVAGPTYKVGGLGFAFPK  629 (720)
Q Consensus       578 --------------------------~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k  629 (720)
                                                .++++++++ +++.++++.+...+.|+.++. |+ +..+++.+...+|+++++|
T Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~y~~~~~~c~-l~~v~~~~~~~~~~~~~~k  729 (823)
T 3kg2_A          651 RRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCD-TMKVGGNLDSKGYGIATPK  729 (823)
T ss_dssp             HHCCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTTSEEEEEEHHHHHHHHTSTTCC-EEEESCCSSCEEECCEEET
T ss_pred             HhccchHHHHHHHHHHhcCCccccCCHHHHHHHHhccCCceEEEechHHHHHHHhcCCCc-eEEccccccccceeEeecC
Confidence                                      345666665 466688999998888887776 88 8899999999999999999


Q ss_pred             CCCChHHHHHHHhcccccCcHHHHHHHhcCCC-CCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 043468          630 GSPLLPSVIEALLKVSESGKLRELETSMIASE-KCMEVNLHDDDDISSLSPSGFWVLFVLSGGISTIALVIFLWRCNWKI  708 (720)
Q Consensus       630 ~s~~~~~in~~i~~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~f~il~~g~~ls~~v~~~E~~~~~  708 (720)
                      +|||++.||++|++++|+|++++|.++|+.+. .|............+|+++++.|+|+++++|+++|+++|++|++|++
T Consensus       730 ~spl~~~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~  809 (823)
T 3kg2_A          730 GSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKS  809 (823)
T ss_dssp             TCSSHHHHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CChHHHHHHHHHHHHHhCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999765 88874333345677999999999999999999999999999999988


Q ss_pred             hhhhhhhhc
Q 043468          709 NENLLVNKK  717 (720)
Q Consensus       709 ~~~~~~~~k  717 (720)
                      ++++++++.
T Consensus       810 ~~~~~~~~~  818 (823)
T 3kg2_A          810 RAEAKRMKG  818 (823)
T ss_dssp             ---------
T ss_pred             chhhhhccC
Confidence            877766554
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* Back     alignment and structure
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A Back     alignment and structure
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A Back     alignment and structure
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} Back     alignment and structure
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Back     alignment and structure
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* Back     alignment and structure
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A Back     alignment and structure
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* Back     alignment and structure
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus} Back     alignment and structure
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* Back     alignment and structure
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A* Back     alignment and structure
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens} Back     alignment and structure
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A* Back     alignment and structure
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima} Back     alignment and structure
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A* Back     alignment and structure
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} Back     alignment and structure
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum} Back     alignment and structure
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A Back     alignment and structure
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans} Back     alignment and structure
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A* Back     alignment and structure
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A Back     alignment and structure
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} Back     alignment and structure
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A* Back     alignment and structure
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} Back     alignment and structure
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A* Back     alignment and structure
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A Back     alignment and structure
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} Back     alignment and structure
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae} Back     alignment and structure
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} Back     alignment and structure
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} Back     alignment and structure
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B Back     alignment and structure
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A* Back     alignment and structure
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A Back     alignment and structure
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Back     alignment and structure
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Back     alignment and structure
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Back     alignment and structure
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Back     alignment and structure
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A Back     alignment and structure
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Back     alignment and structure
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1 Back     alignment and structure
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A* Back     alignment and structure
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 Back     alignment and structure
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Back     alignment and structure
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0 Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Back     alignment and structure
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 Back     alignment and structure
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 Back     alignment and structure
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Back     alignment and structure
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Back     alignment and structure
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Back     alignment and structure
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Back     alignment and structure
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Back     alignment and structure
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} Back     alignment and structure
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Back     alignment and structure
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Back     alignment and structure
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Back     alignment and structure
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Back     alignment and structure
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa} Back     alignment and structure
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A Back     alignment and structure
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1 Back     alignment and structure
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B* Back     alignment and structure
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus} Back     alignment and structure
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A* Back     alignment and structure
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp} Back     alignment and structure
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans} Back     alignment and structure
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli} Back     alignment and structure
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Back     alignment and structure
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A* Back     alignment and structure
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans} Back     alignment and structure
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I} Back     alignment and structure
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp} Back     alignment and structure
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A* Back     alignment and structure
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes} Back     alignment and structure
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli} Back     alignment and structure
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} Back     alignment and structure
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii} Back     alignment and structure
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} Back     alignment and structure
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str} Back     alignment and structure
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A* Back     alignment and structure
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli} Back     alignment and structure
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis} Back     alignment and structure
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A* Back     alignment and structure
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis} Back     alignment and structure
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp} Back     alignment and structure
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125} Back     alignment and structure
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans} Back     alignment and structure
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis} Back     alignment and structure
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis} Back     alignment and structure
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica} Back     alignment and structure
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A Back     alignment and structure
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} Back     alignment and structure
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus} Back     alignment and structure
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis} Back     alignment and structure
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C Back     alignment and structure
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A* Back     alignment and structure
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} Back     alignment and structure
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae} Back     alignment and structure
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} Back     alignment and structure
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} Back     alignment and structure
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis} Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A* Back     alignment and structure
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G* Back     alignment and structure
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A* Back     alignment and structure
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum} Back     alignment and structure
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum} Back     alignment and structure
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125} Back     alignment and structure
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis} Back     alignment and structure
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis} Back     alignment and structure
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A Back     alignment and structure
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis} Back     alignment and structure
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} Back     alignment and structure
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A* Back     alignment and structure
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1 Back     alignment and structure
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} Back     alignment and structure
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A* Back     alignment and structure
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} Back     alignment and structure
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp} Back     alignment and structure
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus} Back     alignment and structure
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A* Back     alignment and structure
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str} Back     alignment and structure
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens} Back     alignment and structure
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus} Back     alignment and structure
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ... Back     alignment and structure
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A* Back     alignment and structure
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} Back     alignment and structure
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis} Back     alignment and structure
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae} Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} Back     alignment and structure
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ... Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli} Back     alignment and structure
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP} Back     alignment and structure
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans} Back     alignment and structure
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A* Back     alignment and structure
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A Back     alignment and structure
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis} Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile} Back     alignment and structure
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus} Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii} Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1 Back     alignment and structure
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I} Back     alignment and structure
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I} Back     alignment and structure
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 720
d1jdpa_401 c.93.1.1 (A:) Hormone binding domain of the atrial 1e-28
d1dp4a_425 c.93.1.1 (A:) Hormone binding domain of the atrial 2e-27
d1ewka_477 c.93.1.1 (A:) Metabotropic glutamate receptor subt 8e-25
d1qo0a_373 c.93.1.1 (A:) Amide receptor/negative regulator of 2e-13
d3ckma1317 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemo 6e-12
d1usga_346 c.93.1.1 (A:) Leucine-binding protein {Escherichia 1e-09
d1mqia_260 c.94.1.1 (A:) Glutamate receptor ligand binding co 4e-07
d1mqia_260 c.94.1.1 (A:) Glutamate receptor ligand binding co 3e-05
d1pb7a_289 c.94.1.1 (A:) N-methyl-D-aspartate receptor subuni 8e-07
d2a5sa1277 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate 2e-06
d2f34a1246 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor li 4e-06
d1wdna_223 c.94.1.1 (A:) Glutamine-binding protein {Escherich 0.001
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (292), Expect = 1e-28
 Identities = 49/321 (15%), Positives = 109/321 (33%), Gaps = 25/321 (7%)

Query: 1   MDLMDSQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPN--WATERWPFLLQASQ 58
           +      K + ILGP      + VA +AS   +P+LS              +  L + + 
Sbjct: 75  VAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAP 134

Query: 59  NQLAQMKAIAAIVQSWEWHQVTVIYEDIDSSATGILPHLSDALREAGAEIIHVLALPHFP 118
                 + + A+ +   W +  ++Y D D         L         E +H        
Sbjct: 135 AYAKMGEMMLALFRHHHWSRAALVYSD-DKLERNCYFTLEGVHEVFQEEGLHTSIYSFDE 193

Query: 119 SSR-LSEELEKLKGGQCRVFVVHLSLELAVHLFEKANKMKMMEKDYIWITTDAFTSLVHS 177
           +     E++ +      RV ++  S +    +   A++  M   DY +   + F S  + 
Sbjct: 194 TKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSSSYG 253

Query: 178 I---------NTSSISSMQGILGVRSHFPEDKPKFQDFCKRFRKRFGAEYPEEDNNHEPG 228
                     +  +  +   +  V +     KP+F+ F    +     +    ++     
Sbjct: 254 DGSWKRGDKHDFEAKQAYSSLQTV-TLLRTVKPEFEKFSMEVKSSVEKQGLNMEDY--VN 310

Query: 229 ALAVQTYDAVWSVALAMEQ-----KSEKLNQKLLRRILLSDFDGLTGKVEFMNQKVAPAH 283
                 +DA+    LA+ +      S+K   K++++     F+G+ G+V   +       
Sbjct: 311 MFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSI-DANGDRYG 369

Query: 284 TYQIINLM---GKSYRELGFW 301
            + +I +      +   +G +
Sbjct: 370 DFSVIAMTDVEAGTQEVIGDY 390
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 425 Back     information, alignment and structure
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 477 Back     information, alignment and structure
>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]} Length = 373 Back     information, alignment and structure
>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 317 Back     information, alignment and structure
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]} Length = 346 Back     information, alignment and structure
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} Length = 260 Back     information, alignment and structure
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} Length = 260 Back     information, alignment and structure
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 289 Back     information, alignment and structure
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Length = 277 Back     information, alignment and structure
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} Length = 246 Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Length = 223 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query720
d1ewka_477 Metabotropic glutamate receptor subtype 1 {Rat (Ra 100.0
d1dp4a_425 Hormone binding domain of the atrial natriuretic p 100.0
d1jdpa_401 Hormone binding domain of the atrial natriuretic p 99.97
d1usga_346 Leucine-binding protein {Escherichia coli [TaxId: 99.96
d1qo0a_373 Amide receptor/negative regulator of the amidase o 99.96
d2a5sa1277 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 99.93
d1pb7a_289 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 99.92
d1mqia_260 Glutamate receptor ligand binding core {Rat (Rattu 99.89
d1wdna_223 Glutamine-binding protein {Escherichia coli [TaxId 99.88
d1ii5a_226 Glutamate receptor ligand binding core {Synechocys 99.87
d3ckma1317 YraM C-terminal domain {Haemophilus influenzae [Ta 99.85
d1xt8a1248 Putative amino-acid transporter CjaA {Campylobacte 99.82
d2f34a1246 Glutamate receptor ligand binding core {Rat (Rattu 99.82
d1lsta_238 Lysine-,arginine-,ornithine-binding (LAO) protein 99.81
d2ozza1228 Hypothetical protein YhfZ {Shigella flexneri [TaxI 97.08
d1jyea_271 Lac-repressor (lacR) core (C-terminal domain) {Esc 96.39
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 96.23
d1jx6a_338 Quorum-sensing signal (autoinducer-2) binding prot 94.68
d8abpa_305 L-arabinose-binding protein {Escherichia coli [Tax 94.11
d1guda_288 D-allose-binding protein {Escherichia coli [TaxId: 93.79
d2nzug1275 Glucose-resistance amylase regulator CcpA, C-termi 93.74
d2fvya1305 Galactose/glucose-binding protein {Escherichia col 93.7
d1byka_255 Trehalose repressor, C-terminal domain {Escherichi 93.2
d1dbqa_282 Purine repressor (PurR), C-terminal domain {Escher 92.78
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 92.12
d2dria_271 D-ribose-binding protein {Escherichia coli, strain 91.03
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 90.57
d1vmea1148 ROO-like flavoprotein TM0755, C-terminal domain {T 89.78
d1xs5a_240 Putative lipoprotein (NlpA family) {Treponema pall 89.77
d1vlja_398 NADH-dependent butanol dehydrogenase A (TM0820) {T 89.24
d1us5a_298 Putative GluR0 ligand binding core {Thermus thermo 87.47
d1o2da_359 Alcohol dehydrogenase TM0920 {Thermotoga maritima 86.52
d2qy9a2211 GTPase domain of the signal recognition particle r 85.22
d1e5da1152 Rubredoxin oxygen:oxidoreductase (ROO), C-terminal 84.59
d1ycga1149 Nitric oxide reductase C-terminal domain {Moorella 83.88
d2fyia1220 LysR-type regulatory protein Cbl {Escherichia coli 83.27
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Metabotropic glutamate receptor subtype 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-32  Score=296.85  Aligned_cols=294  Identities=19%  Similarity=0.352  Sum_probs=233.0

Q ss_pred             cCCeEEEECCCCChhhHHHHHhhccCCCcEEecccCCcccc-cCCCCeEEEeecChHHHHHHHHHHHHhCCCeEEEEEEE
Q 043468            6 SQKVEAILGPQTSEETSSVAEIASKKQIPVLSFADATPNWA-TERWPFLLQASQNQLAQMKAIAAIVQSWEWHQVTVIYE   84 (720)
Q Consensus         6 ~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~~~~~~~l~-~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~v~ii~~   84 (720)
                      .++|.|||||.+|.++.++++++..+++|+||++++++.++ +..||++||+.|++..++++++++++++||++|++||+
T Consensus       118 ~~~v~aviGp~~s~~s~~va~~~~~~~iP~IS~~ats~~lsd~~~yp~f~Rt~psd~~~~~ai~~ll~~f~W~~V~vi~~  197 (477)
T d1ewka_         118 KKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHT  197 (477)
T ss_dssp             -CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             ccceEEEECCCcchhHHHHHHHhhhccCceeccccCCccccccccCCceEEecccchhhHHHHHHHHHHcCCcEEEEEEe
Confidence            46799999999999999999999999999999999999998 57899999999999999999999999999999999999


Q ss_pred             cCCCcccCcHHHHHHHHHHcCcEEEEEEecCCCCcc-cHHHHHHHhhcC--CCeEEEEEcCHHHHHHHHHHHHHcCCCCC
Q 043468           85 DIDSSATGILPHLSDALREAGAEIIHVLALPHFPSS-RLSEELEKLKGG--QCRVFVVHLSLELAVHLFEKANKMKMMEK  161 (720)
Q Consensus        85 ~~~~g~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~-d~~~~l~~i~~~--~~~vvil~~~~~~~~~~l~~a~~~g~~~~  161 (720)
                      ++++|... .+.+++.+++.|+||.....++..... ++...++++++.  +++|||+++...++..++++|.++|+.++
T Consensus       198 ~d~~g~~~-~~~l~~~~~~~~i~v~~~~~i~~~~~~~~~~~~l~~l~~~~~~~rVIv~~~~~~~~~~ll~~a~~~g~~g~  276 (477)
T d1ewka_         198 EGNYGESG-MDAFKELAAQEGLCIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVGE  276 (477)
T ss_dssp             SSHHHHHH-HHHHHHHHHHHTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTCCSC
T ss_pred             cchhHHHH-HHHHHHHHHHcCcEEEEEeeccCCCchhhHHHHHHHHhhhccCceEEEEecCHHHHHHHHHHHHHcCccCC
Confidence            99988777 899999999999999998887654432 899999999866  78999999999999999999999999874


Q ss_pred             CeEEEEeCcccccccccCcchhhhccccEEEEecCCCCChhHHHHHHH---------------HHHHhcccCCC------
Q 043468          162 DYIWITTDAFTSLVHSINTSSISSMQGILGVRSHFPEDKPKFQDFCKR---------------FRKRFGAEYPE------  220 (720)
Q Consensus       162 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~---------------~~~~~~~~~~~------  220 (720)
                       +.|++++.+......... ......|.+++...... .+.+++|...               |++.++-..+.      
T Consensus       277 -~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-i~~f~~~~~~~~~~~~~~n~~~~~~w~~~f~c~~~~~~~~~~  353 (477)
T d1ewka_         277 -FSLIGSDGWADRDEVIEG-YEVEANGGITIKLQSPE-VRSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENP  353 (477)
T ss_dssp             -CEEEECTTTTTCHHHHTT-CHHHHTTCEEEEECCCC-CHHHHHHHTTCCTTTCCSCTTHHHHHHHHTTCBCTTCTTCCT
T ss_pred             -ceEEEecccccchhhccc-cccccCcceEeeecccc-chhHHHHHHhcCcccCCCChHHHHHHHHHhCCCcccccccCc
Confidence             678888887654322221 23445566666543322 2333333211               22222211100      


Q ss_pred             -CC----------CCCCCCchhhhHhhHHHHHHHHHHHHHHH---------------hHHHHHHHHHcccccCcee-eEE
Q 043468          221 -ED----------NNHEPGALAVQTYDAVWSVALAMEQKSEK---------------LNQKLLRRILLSDFDGLTG-KVE  273 (720)
Q Consensus       221 -~~----------~~~~~~~~~~~~Ydav~~~a~al~~~~~~---------------~~~~l~~~l~~~~~~g~~G-~v~  273 (720)
                       ..          ....++.++...||||+++|+||+++...               +++.|.+.|++++|.|++| .+.
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~yDAV~a~A~AL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~v~F~G~tG~~v~  433 (477)
T d1ewka_         354 NFKKVCTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGHVGLCDAMKPIDGRKLLDFLIKSSFVGVSGEEVW  433 (477)
T ss_dssp             TCCSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSCCGGGSSCCHHHHHHHHHTCEEECTTSCEEE
T ss_pred             cccccccchhhcccccccchHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccCCCcCCHHHHHHHHhcCeeECCCCCEEE
Confidence             00          00123456788999999999999988642               5789999999999999999 699


Q ss_pred             EecCCcCCCCeEEEEEeec---C--ceEEEEEEecC
Q 043468          274 FMNQKVAPAHTYQIINLMG---K--SYRELGFWTYG  304 (720)
Q Consensus       274 f~~~g~~~~~~~~i~~~~~---~--~~~~v~~w~~~  304 (720)
                      ||++|++. ..|+|++++.   +  ++++||.|++.
T Consensus       434 Fd~nGd~~-~~y~I~n~q~~~~~~~~~~~VG~w~~~  468 (477)
T d1ewka_         434 FDEKGDAP-GRYDIMNLQYTEANRYDYVHVGTWHEG  468 (477)
T ss_dssp             CCTTSCCC-CCEEEEEEEECSSSCEEEEEEEEEETT
T ss_pred             ECCCCCcc-ceEEEEEEEECCCCcEEEEEEEEEeCC
Confidence            99999996 8899999872   2  57899999864
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Back     information, alignment and structure
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} Back     information, alignment and structure
>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} Back     information, alignment and structure
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]} Back     information, alignment and structure
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]} Back     information, alignment and structure
>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema pallidum [TaxId: 160]} Back     information, alignment and structure
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]} Back     information, alignment and structure