Citrus Sinensis ID: 043480
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 493 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SAD9 | 517 | Pentatricopeptide repeat- | yes | no | 0.981 | 0.936 | 0.571 | 1e-167 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.969 | 0.778 | 0.283 | 8e-61 | |
| Q3ECK2 | 548 | Pentatricopeptide repeat- | no | no | 0.910 | 0.819 | 0.302 | 6e-60 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.989 | 0.774 | 0.277 | 6e-60 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.920 | 0.612 | 0.289 | 2e-58 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.918 | 0.716 | 0.286 | 2e-58 | |
| Q9CAM8 | 629 | Pentatricopeptide repeat- | no | no | 0.939 | 0.736 | 0.289 | 4e-58 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.955 | 0.760 | 0.288 | 4e-58 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.931 | 0.728 | 0.281 | 6e-58 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.955 | 0.645 | 0.282 | 3e-57 |
| >sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 587 bits (1514), Expect = e-167, Method: Compositional matrix adjust.
Identities = 291/509 (57%), Positives = 371/509 (72%), Gaps = 25/509 (4%)
Query: 1 MIQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRF 60
M Q LGA RL YR++I+NLVK+G+ID AV VFDEM S+ RVFS DYNRFIGVL+R SRF
Sbjct: 1 MHQTLGAVRLAYRSRIANLVKSGMIDNAVQVFDEMRHSSYRVFSFDYNRFIGVLVRESRF 60
Query: 61 DLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKL------------ 108
+L + Y M P+GFSL PFTYSRFISGLC+VK F LI+ LL +M+ L
Sbjct: 61 ELAEAIYWDMKPMGFSLIPFTYSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVY 120
Query: 109 ------------ALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGI 156
A++ F MV +GREPDVV+YTI+I+GL +A + AV+ W MI +G+
Sbjct: 121 LDLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGV 180
Query: 157 KPDNKACAALVVGLCGDGKVDLAYELTVGAMK-GKVEFGVLIYNALISGFCRTGRIRRAM 215
PDNKACAALVVGLC KVDLAYE+ +K +V+ ++YNALISGFC+ GRI +A
Sbjct: 181 SPDNKACAALVVGLCHARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAE 240
Query: 216 AIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGL 275
A+KS+M GCEPDLVTYN +LNYY D ML AE ++ EM GI+ D YSYNQLLK
Sbjct: 241 ALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRH 300
Query: 276 CNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDV 335
C + DK Y FMVK+ME +G D VSY+T+IE FC+ TR+AY+LFE MR++G+ ++V
Sbjct: 301 CRVSHPDKCYNFMVKEMEPRGFCDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNV 360
Query: 336 VTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLD 395
VT+T LIKAFLREG+S++A+KLL+QM + LSPDRI YTTI+D LCKS + AYGVF D
Sbjct: 361 VTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFND 420
Query: 396 MVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKK 455
M+E ITPD ISYN+LI+GLC+S RV+EA+ L+E+M+ + PDE+TFK +IGGL++ KK
Sbjct: 421 MIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKK 480
Query: 456 LELACRLWDQMMEKGFTLDKTVSAALIEA 484
L A ++WDQMM+KGFTLD+ VS LI+A
Sbjct: 481 LSAAYKVWDQMMDKGFTLDRDVSDTLIKA 509
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (598), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 153/539 (28%), Positives = 257/539 (47%), Gaps = 61/539 (11%)
Query: 12 YRAQIS-NLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQM 70
YR ++S N + +D+AV +F EM +S +++++ + + + +FDLV + ++M
Sbjct: 32 YREKLSRNALLHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKM 91
Query: 71 HPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKL---------------------- 108
LG S +TY+ I+ LC + +L M KL
Sbjct: 92 EILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRI 151
Query: 109 --ALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAAL 166
A+ + +MV G +PD VT+T ++ GL + + +AV E M+ G +PD A+
Sbjct: 152 SEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAV 211
Query: 167 VVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGC 226
+ GLC G+ DLA L KGK+E V+IY+ +I C+ + A+ + + M G
Sbjct: 212 INGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGI 271
Query: 227 EPDL-----------------------------------VTYNAILNYYCDEVMLDEAEK 251
PD+ VT+N++++ + E L EAEK
Sbjct: 272 RPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEK 331
Query: 252 LVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFC 311
L EM I+P++ +YN L+ G C ++LD+A + L D V+YNT+I FC
Sbjct: 332 LFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFC 391
Query: 312 KGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRI 371
K + +LF M RRG+ + VT+T LI F + A+ + QM + P+ +
Sbjct: 392 KAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIM 451
Query: 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEM 431
Y T++D LCK+ ++ A VF + + + PD+ +YN + G+CK+ +V + L+ +
Sbjct: 452 TYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSL 511
Query: 432 QIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDA 490
++G PD + + +I G ++ E A L+ +M E G D LI A HL+D
Sbjct: 512 SLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRA-HLRDG 569
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 232 bits (591), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 142/470 (30%), Positives = 247/470 (52%), Gaps = 21/470 (4%)
Query: 25 IDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84
++ A+ +F +M +S +D+NR + +++ ++D+V ++M LG +T++
Sbjct: 66 LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 125
Query: 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKA 144
I+ C +L AL + KM+ G EPD VT +++G C+ A
Sbjct: 126 VINCFCCCFQVSL-----------ALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174
Query: 145 VQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISG 204
V + M+E G KPD A A++ LC +V+ A++ + + V+ Y AL++G
Sbjct: 175 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 234
Query: 205 FCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPD 264
C + R A + S M P+++TY+A+L+ + + EA++L EM I+PD
Sbjct: 235 LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPD 294
Query: 265 VYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKG-LRDKVSYNTVIEAFCKGGQTRRAYKLF 323
+ +Y+ L+ GLC +++D+A M M +KG L D VSYNT+I FCK + KLF
Sbjct: 295 IVTYSSLINGLCLHDRIDEANQ-MFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLF 353
Query: 324 EGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKS 383
M +RG+ + VT+ LI+ F + G A++ +QM +SPD Y ++ LC +
Sbjct: 354 REMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDN 413
Query: 384 REIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTF 443
E+ A +F DM ++ + D+++Y +I G+CK+ +V EA L+ + ++G PD VT+
Sbjct: 414 GELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTY 473
Query: 444 KLLIGGLVQEKKLELACRLWDQMMEKGF-----TL---DKTVSAALIEAI 485
++ GL + L L+ +M ++G TL D T+SA LI+ +
Sbjct: 474 TTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKM 523
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 232 bits (591), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 152/548 (27%), Positives = 256/548 (46%), Gaps = 60/548 (10%)
Query: 2 IQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFD 61
++ R YR N + +D AV++F +M +S +++++ + + + ++FD
Sbjct: 39 VRDFSGVRYDYRKISINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFD 98
Query: 62 LVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKL------------- 108
LV +QM LG S +TYS I+ C +L +L M KL
Sbjct: 99 LVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLL 158
Query: 109 -----------ALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIK 157
A+ + +MV G +PD T+ +I GL + +AV + M+ G +
Sbjct: 159 NGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQ 218
Query: 158 PDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAI 217
PD +V GLC G +DLA L +GK+E GV+IYN +I C + A+ +
Sbjct: 219 PDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNL 278
Query: 218 KSFMKWNGCEPDLVTYNAILNYYCD----------------------------------- 242
+ M G P++VTYN+++ C+
Sbjct: 279 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 338
Query: 243 EVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVS 302
E L EAEKL EM I+PD+++Y+ L+ G C ++LD+A + + V+
Sbjct: 339 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 398
Query: 303 YNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMR 362
YNT+I+ FCK + +LF M +RG+ + VT+T LI F + A+ + QM
Sbjct: 399 YNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMV 458
Query: 363 GMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVS 422
+ PD + Y+ ++D LC + ++ TA VF + + PD+ +YN +I G+CK+ +V
Sbjct: 459 SDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVE 518
Query: 423 EAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALI 482
+ L+ + ++G P+ VT+ ++ G ++ E A L+ +M E+G D LI
Sbjct: 519 DGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLI 578
Query: 483 EAIHLQDA 490
A HL+D
Sbjct: 579 RA-HLRDG 585
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (578), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/467 (28%), Positives = 230/467 (49%), Gaps = 13/467 (2%)
Query: 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMH 71
Y I + + G I +A H+ M I Y+ + R D V + M
Sbjct: 249 YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMK 308
Query: 72 PLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIV 131
G + Y I LC + A E F +M+ +G PD V YT +
Sbjct: 309 RKGLKPNSYIYGSIIGLLCRICKLAE-----------AEEAFSEMIRQGILPDTVVYTTL 357
Query: 132 IDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKV 191
IDG CK + A + + M I PD A++ G C G + A +L +
Sbjct: 358 IDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGL 417
Query: 192 EFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEK 251
E + + LI+G+C+ G ++ A + + M GC P++VTY +++ C E LD A +
Sbjct: 418 EPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANE 477
Query: 252 LVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR-DKVSYNTVIEAF 310
L+ EM G++P++++YN ++ GLC S +++A + +V + EA GL D V+Y T+++A+
Sbjct: 478 LLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEA-VKLVGEFEAAGLNADTVTYTTLMDAY 536
Query: 311 CKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDR 370
CK G+ +A ++ + M +G++ +VTF +L+ F G EKLLN M ++P+
Sbjct: 537 CKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNA 596
Query: 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEE 430
+ +++ C + A ++ DM +G+ PD +Y L+ G CK+ + EA L++E
Sbjct: 597 TTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE 656
Query: 431 MQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTV 477
M+ +G T+ +LI G ++ KK A ++DQM +G DK +
Sbjct: 657 MKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEI 703
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (577), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 144/502 (28%), Positives = 250/502 (49%), Gaps = 49/502 (9%)
Query: 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQF 65
G R I R ++S+++K +D AV +F +M +S +++N+ + + + ++F+LV
Sbjct: 48 GDYREILRNRLSDIIK---VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVIS 104
Query: 66 YYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDV 125
+QM LG S +TYS FI+ C +L AL V KM+ G EPD+
Sbjct: 105 LGEQMQTLGISHDLYTYSIFINCFCRRSQLSL-----------ALAVLAKMMKLGYEPDI 153
Query: 126 VTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVG 185
VT + +++G C +K AV + M+E G KPD L+ GL K A L
Sbjct: 154 VTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQ 213
Query: 186 AMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVM 245
++ + ++ Y +++G C+ G I A+++ M+ E D+V YN I++ C
Sbjct: 214 MVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKH 273
Query: 246 LDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNT 305
+D+A L EM++ GI PDV++Y+ L+ LCN + A + +E K + V+++
Sbjct: 274 MDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 333
Query: 306 VIEAFCKGGQTRRAYKLFEGMRRRGIELD------------------------------- 334
+I+AF K G+ A KL++ M +R I+ D
Sbjct: 334 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 393
Query: 335 ----VVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAY 390
VVT++ LIK F + +L +M L + + YTT+I ++R+ A
Sbjct: 394 CFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 453
Query: 391 GVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGL 450
VF MV G+ P++++YN L++GLCK+ ++++AM ++E +Q PD T+ ++I G+
Sbjct: 454 MVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGM 513
Query: 451 VQEKKLELACRLWDQMMEKGFT 472
+ K+E L+ + KG +
Sbjct: 514 CKAGKVEDGWELFCNLSLKGVS 535
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (575), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 161/557 (28%), Positives = 263/557 (47%), Gaps = 94/557 (16%)
Query: 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQF 65
G R I R ++S+++K +D AV +F +M +S +++N+ + + + ++F+LV
Sbjct: 48 GDYREILRNRLSDIIK---VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVIS 104
Query: 66 YYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDV 125
+QM LG S +TYS FI+ C +L AL V KM+ G EPD+
Sbjct: 105 LGEQMQTLGISHDLYTYSIFINCFCRRSQLSL-----------ALAVLAKMMKLGYEPDI 153
Query: 126 VTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD--------------NKACAA------ 165
VT + +++G C +K AV + M+E G KPD NKA A
Sbjct: 154 VTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQ 213
Query: 166 ---------------LVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGR 210
+V GLC G +DLA L +++ V+I+N +I C+
Sbjct: 214 MVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRH 273
Query: 211 IRRAMAIKSFMKWNGCEPDLVTYNAILNYYCD---------------------------- 242
+ A+ + + M+ G P++VTYN+++N C+
Sbjct: 274 VEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNA 333
Query: 243 -------EVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKA---YMFMVKKM 292
E L EAEKL EM I+PD +YN L+ G C N+LD+A + FMV K
Sbjct: 334 LIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSK- 392
Query: 293 EAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSA 352
L + +YNT+I FCK + +LF M +RG+ + VT+T +I+ F + G
Sbjct: 393 --DCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCD 450
Query: 353 MAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALI 412
A+ + QM + D + Y+ ++ LC ++ TA +F + + + ++ YN +I
Sbjct: 451 SAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMI 510
Query: 413 NGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFT 472
G+CK+ +V EA L+ + I+ PD VT+ +I GL ++ L+ A L+ +M E G
Sbjct: 511 EGMCKAGKVGEAWDLFCSLSIK---PDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTL 567
Query: 473 LDKTVSAALIEAIHLQD 489
+ LI A +L+D
Sbjct: 568 PNSGTYNTLIRA-NLRD 583
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (575), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 140/486 (28%), Positives = 244/486 (50%), Gaps = 15/486 (3%)
Query: 4 KLG--AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFD 61
KLG + + ++ G + +AV + D M + R + + I L R
Sbjct: 133 KLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVS 192
Query: 62 LVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGR 121
+M GF TY ++ LC+ N LAL++F KM +
Sbjct: 193 EALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN-----------SALALDLFRKMEERNI 241
Query: 122 EPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYE 181
+ VV Y+IVID LCK FD A+ + M GIK D ++L+ GLC DGK D +
Sbjct: 242 KASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAK 301
Query: 182 LTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYC 241
+ + + V+ ++ALI F + G++ A + + M G PD +TYN++++ +C
Sbjct: 302 MLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC 361
Query: 242 DEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGL-RDK 300
E L EA ++ M S G EPD+ +Y+ L+ C + ++D M + +++ +KGL +
Sbjct: 362 KENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDG-MRLFREISSKGLIPNT 420
Query: 301 VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQ 360
++YNT++ FC+ G+ A +LF+ M RG+ VVT+ IL+ G A ++ +
Sbjct: 421 ITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEK 480
Query: 361 MRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR 420
M+ ++ +Y II +C + ++ A+ +F + ++G+ PDV++YN +I GLCK
Sbjct: 481 MQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGS 540
Query: 421 VSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAA 480
+SEA L+ +M+ G PD+ T+ +LI + L + L ++M GF+ D +
Sbjct: 541 LSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKM 600
Query: 481 LIEAIH 486
+I+ +
Sbjct: 601 VIDMLS 606
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 225 bits (574), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 154/547 (28%), Positives = 256/547 (46%), Gaps = 88/547 (16%)
Query: 12 YRAQIS-NLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQM 70
YR ++S N + +D AV +F EM +S I++++ + + + ++FD+V +QM
Sbjct: 48 YREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQM 107
Query: 71 HPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTI 130
LG +TYS I+ C LAL V KM+ G EP++VT +
Sbjct: 108 QNLGIPHNHYTYSILINCFCRRSQLP-----------LALAVLGKMMKLGYEPNIVTLSS 156
Query: 131 VIDGLCKAKEFDKAVQAWEHMIENGIKPD--------------NKACAAL---------- 166
+++G C +K +AV + M G +P+ NKA A+
Sbjct: 157 LLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG 216
Query: 167 -----------VVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAM 215
V GLC G DLA+ L +GK+E GVLIYN +I G C+ + A+
Sbjct: 217 CQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDAL 276
Query: 216 AIKSFMKWNGCEPDLVTYNAILNYYCD--------------------------------- 242
+ M+ G P++VTY+++++ C+
Sbjct: 277 NLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAF 336
Query: 243 --EVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKA---YMFMVKKMEAKGL 297
E L EAEKL EM I+P + +Y+ L+ G C ++LD+A + FMV K
Sbjct: 337 VKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK---HCF 393
Query: 298 RDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKL 357
D V+YNT+I+ FCK + ++F M +RG+ + VT+ ILI+ + G MA+++
Sbjct: 394 PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 453
Query: 358 LNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCK 417
+M + P+ + Y T++D LCK+ ++ A VF + + P + +YN +I G+CK
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 513
Query: 418 SSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTV 477
+ +V + L+ + ++G PD V + +I G ++ E A L+ +M E G +
Sbjct: 514 AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGC 573
Query: 478 SAALIEA 484
LI A
Sbjct: 574 YNTLIRA 580
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (567), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 138/489 (28%), Positives = 249/489 (50%), Gaps = 18/489 (3%)
Query: 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFY 66
+IY+ I +L K +++A+ + +EM C + +N I L + R +
Sbjct: 250 PNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKM 309
Query: 67 YQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVV 126
+M GF+ TY ++GLC++ A ++F+++ +P++V
Sbjct: 310 VNRMLIRGFAPDDITYGYLMNGLCKIGRV-----------DAAKDLFYRI----PKPEIV 354
Query: 127 TYTIVIDGLCKAKEFDKAVQAWEHMIEN-GIKPDNKACAALVVGLCGDGKVDLAYELTVG 185
+ +I G D A M+ + GI PD +L+ G +G V LA E+
Sbjct: 355 IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHD 414
Query: 186 AMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVM 245
+ V Y L+ GFC+ G+I A + + M +G +P+ V +N +++ +C E
Sbjct: 415 MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHR 474
Query: 246 LDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGL-RDKVSYN 304
+ EA ++ EM G +PDVY++N L+ GLC +++ A +++++ M ++G+ + V+YN
Sbjct: 475 IPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHA-LWLLRDMISEGVVANTVTYN 533
Query: 305 TVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM 364
T+I AF + G+ + A KL M +G LD +T+ LIK R G A L +M
Sbjct: 534 TLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD 593
Query: 365 NLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEA 424
+P I +I+ LC+S + A +MV +G TPD++++N+LINGLC++ R+ +
Sbjct: 594 GHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDG 653
Query: 425 MHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEA 484
+ ++ ++Q G PD VTF L+ L + + AC L D+ +E GF + + L+++
Sbjct: 654 LTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQS 713
Query: 485 IHLQDAANK 493
I Q+ ++
Sbjct: 714 IIPQETLDR 722
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 493 | ||||||
| 225424625 | 519 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.946 | 0.658 | 0.0 | |
| 255578371 | 554 | pentatricopeptide repeat-containing prot | 0.997 | 0.888 | 0.638 | 0.0 | |
| 224102411 | 512 | predicted protein [Populus trichocarpa] | 0.985 | 0.949 | 0.637 | 0.0 | |
| 449435418 | 514 | PREDICTED: pentatricopeptide repeat-cont | 0.993 | 0.953 | 0.611 | 1e-180 | |
| 356525427 | 521 | PREDICTED: pentatricopeptide repeat-cont | 0.993 | 0.940 | 0.571 | 1e-175 | |
| 297844198 | 517 | pentatricopeptide repeat-containing prot | 0.981 | 0.936 | 0.571 | 1e-165 | |
| 15222150 | 517 | pentatricopeptide repeat-containing prot | 0.981 | 0.936 | 0.571 | 1e-165 | |
| 357121428 | 663 | PREDICTED: pentatricopeptide repeat-cont | 0.979 | 0.728 | 0.443 | 1e-122 | |
| 326531238 | 660 | predicted protein [Hordeum vulgare subsp | 0.987 | 0.737 | 0.442 | 1e-120 | |
| 115474201 | 665 | Os07g0688100 [Oryza sativa Japonica Grou | 0.987 | 0.732 | 0.434 | 1e-119 |
| >gi|225424625|ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Vitis vinifera] gi|296081374|emb|CBI16807.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/515 (65%), Positives = 401/515 (77%), Gaps = 24/515 (4%)
Query: 1 MIQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRF 60
M + LG RL YRAQIS+ VKAGLIDQA+ FDEMT+SNCRVFSIDYNRFIGVL+R SRF
Sbjct: 1 MYRSLGRHRLAYRAQISSYVKAGLIDQALKTFDEMTKSNCRVFSIDYNRFIGVLVRQSRF 60
Query: 61 DLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKL------------ 108
DL + YY +M P GFSL FTYSRFISGLC+VKNF LI LL++MD+L
Sbjct: 61 DLAEQYYDRMIPQGFSLNSFTYSRFISGLCKVKNFVLIEKLLEDMDRLGYVPDIWAYNIY 120
Query: 109 ------------ALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGI 156
AL V MV KGREPD+VTYTIVI+GLC+A FD AV+ W +M+ G
Sbjct: 121 LNLLCCENQLDVALGVVQTMVEKGREPDIVTYTIVINGLCRAGRFDSAVEIWRNMVRKGF 180
Query: 157 KPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMA 216
PD KAC ALV+GLC DGKVDLAYELTVGAM+G+++F IYN+LI+GFC+ G I +A +
Sbjct: 181 SPDEKACRALVLGLCHDGKVDLAYELTVGAMRGRIKFSKSIYNSLINGFCQAGWIDKAQS 240
Query: 217 IKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLC 276
I SFM+ NGCEPDLVTYN +LNY CDE++L+EAE L+ +ME G+EPDVYSYN+LLKGLC
Sbjct: 241 IISFMRRNGCEPDLVTYNVLLNYCCDELLLEEAENLMKKMERSGVEPDVYSYNELLKGLC 300
Query: 277 NSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVV 336
+N+LDKAYM MV KMEAKGL D VSYNT+I+A C T+RAYKLFE M +GI DVV
Sbjct: 301 KANRLDKAYMMMVNKMEAKGLCDVVSYNTIIKALCTASHTKRAYKLFEEMGGKGITPDVV 360
Query: 337 TFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDM 396
TFTILIKAFLREGSS +A+KLL+QM G+ L PDR+LYTTI+D LCK+ ++G A+ VF DM
Sbjct: 361 TFTILIKAFLREGSSNIAKKLLDQMTGLGLLPDRVLYTTIVDHLCKTGKMGMAHSVFCDM 420
Query: 397 VEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKL 456
VE GITPDV+SYNALINGLC++SRVSEAMHLYE+M G PDEVTFKL+IGGL+ EKKL
Sbjct: 421 VESGITPDVVSYNALINGLCRASRVSEAMHLYEDMHTGGPCPDEVTFKLIIGGLIWEKKL 480
Query: 457 ELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDAA 491
+ACR+WDQMMEKGFTLD VS L+ AIH DA+
Sbjct: 481 SVACRVWDQMMEKGFTLDGAVSETLVNAIHSNDAS 515
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255578371|ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223530468|gb|EEF32352.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/517 (63%), Positives = 392/517 (75%), Gaps = 25/517 (4%)
Query: 1 MIQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRF 60
M Q LGA RLIYR++I+ VKAGLID+AV VFDEM+QSNCRVFSIDYNRFIGVLI HSRF
Sbjct: 1 MYQSLGAHRLIYRSRIAGYVKAGLIDKAVQVFDEMSQSNCRVFSIDYNRFIGVLINHSRF 60
Query: 61 DLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKL------------ 108
DL YY QM GFSL+ FTYSRFI+GLC+VKNFT I+ LL +M+ L
Sbjct: 61 DLANHYYSQMGTRGFSLSSFTYSRFITGLCKVKNFTFIDELLHDMETLNCLPDIWAFNIY 120
Query: 109 ------------ALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGI 156
ALEVF K+V GR+PDVVTYTI+I G+CK K+FD A+Q W MI G
Sbjct: 121 LHLLFVEGRIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQFWRDMIHKGF 180
Query: 157 KPDNKACAALVVGLCGDGKVDLAYELTVGAMK-GKVEFGVLIYNALISGFCRTGRIRRAM 215
PDNKAC A+VVGLC KVDLAYEL + MK G+V+ L+YNALISGFCR GRI +A
Sbjct: 181 SPDNKACGAIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTLVYNALISGFCRAGRIDKAQ 240
Query: 216 AIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGL 275
AIKSFM+ NGCEPDLVTYN LNY+CDE+MLD+A+KL+ ME GIEPDVYSYNQLLKG+
Sbjct: 241 AIKSFMRRNGCEPDLVTYNVFLNYFCDELMLDDAKKLLKLMERSGIEPDVYSYNQLLKGI 300
Query: 276 CNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDV 335
C N DKAY+ M KM KGL D VSYNT+I+AFCK G T AYKLFE M ++GI DV
Sbjct: 301 CKGNCPDKAYLLMTNKMWPKGLCDVVSYNTIIKAFCKIGDTTSAYKLFEEMGQKGIPPDV 360
Query: 336 VTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLD 395
VTFTI IKAFL +GS +A+KLL+QM M LSPD I YTTIID LCKS ++ A+ +F D
Sbjct: 361 VTFTIFIKAFLGKGSFNIAKKLLDQMTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCD 420
Query: 396 MVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKK 455
MVEQGI+PDVIS+NALING CK SRVSEAMHLYEEMQ RG++PDEVT+KL+IGGL++EKK
Sbjct: 421 MVEQGISPDVISFNALINGFCKCSRVSEAMHLYEEMQNRGSYPDEVTYKLIIGGLIEEKK 480
Query: 456 LELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDAAN 492
+ +AC +W QMM+KGFTLD+ ++ LI +++A+
Sbjct: 481 ISIACMVWGQMMDKGFTLDRAIAQTLIRGNSIENAST 517
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224102411|ref|XP_002312667.1| predicted protein [Populus trichocarpa] gi|222852487|gb|EEE90034.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/511 (63%), Positives = 381/511 (74%), Gaps = 25/511 (4%)
Query: 1 MIQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRF 60
M Q LG RLIYR +I++ VKAGLID AV VFDEMT S CRVF IDYNRFIGVLIRHSRF
Sbjct: 1 MYQPLGVHRLIYRTRIASYVKAGLIDYAVKVFDEMTLSECRVFGIDYNRFIGVLIRHSRF 60
Query: 61 DLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKL------------ 108
DL YY +M PLGFSL+ FTYSRFISGLC+ K FT I+ LL +M+KL
Sbjct: 61 DLAHHYYSKMAPLGFSLSSFTYSRFISGLCQTKEFTFIDNLLKDMEKLHCVPDIWAFNIY 120
Query: 109 ------------ALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGI 156
ALEVF +MV +GREPDVVT+TI+IDGLCK K+FD AVQ W +M++ GI
Sbjct: 121 LNLLFRENREESALEVFGRMVERGREPDVVTFTIIIDGLCKMKKFDAAVQFWLNMLDKGI 180
Query: 157 KPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKV-EFGVLIYNALISGFCRTGRIRRAM 215
+PDNKAC AL VGLC G+VDLAYEL +G + G + E L+YNALISGFCR GRI +A+
Sbjct: 181 RPDNKACVALAVGLCDGGQVDLAYELIIGVISGGLSEVSTLVYNALISGFCRAGRIDKAL 240
Query: 216 AIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGL 275
A+ SFM GC+PDLVTYN +LNY C+E M +EA KL+ +ME IEPDVYSYNQLLK
Sbjct: 241 AMVSFMSRTGCKPDLVTYNVLLNYCCNEFMFEEAVKLLKKMECSAIEPDVYSYNQLLKAH 300
Query: 276 CNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDV 335
C +N DKAY+FMV KM KG D VSYNT+I+AFC RRAYKLFE M R+GI DV
Sbjct: 301 CKANHPDKAYLFMVTKMVPKGFCDVVSYNTIIKAFCSISNNRRAYKLFEEMGRKGIAPDV 360
Query: 336 VTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLD 395
VTFTILIKAFLREG+S MA+KLL+ M GM L PDRI YTTIID CKS ++ A+ +F D
Sbjct: 361 VTFTILIKAFLREGNSDMAKKLLDLMAGMGLLPDRIFYTTIIDHHCKSGKVEMAHSIFCD 420
Query: 396 MVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKK 455
MVE+GITPDV+SYNALING CKS RV E MHLYE+M RG+ PDEVT+KL+IG LV+E K
Sbjct: 421 MVEKGITPDVVSYNALINGFCKSLRVGEVMHLYEQMLQRGSFPDEVTYKLIIGALVRENK 480
Query: 456 LELACRLWDQMMEKGFTLDKTVSAALIEAIH 486
L ACR+WDQMME+G TLD+ +S LI AI
Sbjct: 481 LSDACRVWDQMMERGLTLDRGISEMLINAIQ 511
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435418|ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial-like [Cucumis sativus] gi|449494962|ref|XP_004159696.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 315/515 (61%), Positives = 389/515 (75%), Gaps = 25/515 (4%)
Query: 1 MIQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRF 60
M +LGA RL++RA I+ VK GLID+A+ +FDEMTQS+C V S DYNRFIGVLI SRF
Sbjct: 1 MYHRLGANRLVFRASITKCVKVGLIDEAIRIFDEMTQSDCPVTSRDYNRFIGVLISRSRF 60
Query: 61 DLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKL------------ 108
DL + YY +M P GFSLTPFTYSRFIS LCE+KNF LI LL++M +L
Sbjct: 61 DLAESYYSRMIPQGFSLTPFTYSRFISALCEIKNFGLIGRLLEDMKQLGYLPDIWAFNIY 120
Query: 109 ------------ALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGI 156
AL+ F +MV+KGREPDVVTYTI++D LCKAK++DKAV+ W M+ G+
Sbjct: 121 LNLLFRENLLELALKFFDEMVAKGREPDVVTYTIIVDRLCKAKQYDKAVEFWRCMVNKGL 180
Query: 157 KPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMA 216
PD KAC ALVVGLC GKVDLAYELTVG MKG+++F LI+N+L+SGFC++GRI +A+A
Sbjct: 181 SPDMKACTALVVGLCDGGKVDLAYELTVGEMKGEMKFNNLIFNSLMSGFCKSGRISKALA 240
Query: 217 IKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLC 276
IKSFM +GCEPDL+TYN +LN++CD +ML+ A K + +ME G+EPDVYSYNQLLKGLC
Sbjct: 241 IKSFMSKHGCEPDLITYNILLNFFCDGLMLELAGKSMKKMERIGMEPDVYSYNQLLKGLC 300
Query: 277 NSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVV 336
+N+LDKAY M M KGL D VSYNTVI A CK TR+AY+LFE M ++ + DV
Sbjct: 301 KANRLDKAYKLM-NTMWEKGLCDTVSYNTVIGALCKSFATRKAYRLFEEMGQKDVAPDVG 359
Query: 337 TFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDM 396
TF LIKAFL EGS +A+ LL M L PD I YTT++D CK+R+I A GVF DM
Sbjct: 360 TFATLIKAFLIEGSPHIAKGLLQTMTQTVLIPDLIFYTTVVDYFCKTRKIEMAQGVFRDM 419
Query: 397 VEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKL 456
+E GI+PDV+SYNALINGLCK+S+VSEAM LYEEMQIRG +PDEVTFKL+IGGL+++K+L
Sbjct: 420 IEIGISPDVVSYNALINGLCKASKVSEAMLLYEEMQIRGCYPDEVTFKLIIGGLLRKKEL 479
Query: 457 ELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDAA 491
LAC++WDQMMEKG+TLDK +S LI+AI +DA
Sbjct: 480 SLACQVWDQMMEKGYTLDKFLSETLIKAIRSRDAG 514
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 296/518 (57%), Positives = 380/518 (73%), Gaps = 28/518 (5%)
Query: 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDL 62
+GA RL YR+QIS LVKAGLI+QA+++FD+MT+SNCRVFS+DYNRFIGVL+RHSR L
Sbjct: 4 SSIGAHRLAYRSQISKLVKAGLINQAIYLFDQMTESNCRVFSVDYNRFIGVLLRHSRLHL 63
Query: 63 VQFYYQQ-MHPLGFSLTPFTYSRFISGLCEVKN---FTLINILLDNMDKL---------- 108
YY++ + P GFSL PFTYSRFIS LC N LI+ LL +MD L
Sbjct: 64 AHHYYRRHVIPRGFSLLPFTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDIWAFN 123
Query: 109 --------------ALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154
ALE+FH M SKGR+PDVV+YTI+ID LC AK FD+A + W +I+
Sbjct: 124 TYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDK 183
Query: 155 GIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRA 214
G+ PD KAC ALVVGLC G+VDLAYEL VG +KG V+ L+YNALI GFCR GR+ +A
Sbjct: 184 GLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKA 243
Query: 215 MAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKG 274
M IK+FM GC PDLVTYN +LNY C+E M+DEA +LV ME G+EPD+YSYN+LLKG
Sbjct: 244 MKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKG 303
Query: 275 LCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELD 334
C +N +D+A++ MV++M+ KG+ D VSYNTVI AFCK +TR+ Y+LFE M +GI D
Sbjct: 304 FCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPD 363
Query: 335 VVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFL 394
+VTF ILI AFLREGS+ + +KLL++M M + PD I YT ++D LCK+ ++ A+ VF
Sbjct: 364 MVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFR 423
Query: 395 DMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEK 454
DMVE G+ PDVISYNAL+NG CK+SRV +AMHL++EMQ +G +PDEVT+KL++GGL++ K
Sbjct: 424 DMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGK 483
Query: 455 KLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDAAN 492
K+ LACR+WDQMME+GFTL++ +S L+ AI D
Sbjct: 484 KISLACRVWDQMMERGFTLNRHLSETLVNAIQSSDGTT 521
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297844198|ref|XP_002889980.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297335822|gb|EFH66239.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 589 bits (1518), Expect = e-165, Method: Compositional matrix adjust.
Identities = 291/509 (57%), Positives = 373/509 (73%), Gaps = 25/509 (4%)
Query: 1 MIQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRF 60
M Q LGA RL YR++I+NLVK+G+ID AV VFDEM S+ RVFS DYNRFIGVL++ SRF
Sbjct: 1 MHQTLGAVRLAYRSRIANLVKSGMIDNAVQVFDEMRHSSYRVFSSDYNRFIGVLVKESRF 60
Query: 61 DLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKL------------ 108
+L + Y+ M P+GFSL PFTYSRFISGLC+VK F LI+ LL +M+ L
Sbjct: 61 ELAEAIYRDMMPMGFSLIPFTYSRFISGLCKVKKFELIDALLRDMETLGFIPDIWAFNIY 120
Query: 109 ------------ALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGI 156
A++ F MV +GREPDVV+YTI+I+GL +A + AV+ W MI +G+
Sbjct: 121 LDLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGV 180
Query: 157 KPDNKACAALVVGLCGDGKVDLAYELTVGAMK-GKVEFGVLIYNALISGFCRTGRIRRAM 215
PDNKACAALVVGLC KVDLAYE+ +K +V+ +++YNALISGFC+ GRI +A
Sbjct: 181 SPDNKACAALVVGLCHARKVDLAYEMVAEEIKSARVKLSIVVYNALISGFCKAGRIEKAE 240
Query: 216 AIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGL 275
A+KSFM GCEPDLVTYN +LNYY D ML AE ++ EM GI+ D YSYNQLLK
Sbjct: 241 ALKSFMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMTEMVRSGIQLDAYSYNQLLKRH 300
Query: 276 CNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDV 335
C + D+ Y FM+K+ME +G D VSY+T+IE FC+ T++AYKLFE MR++GI +V
Sbjct: 301 CRVSHPDRCYSFMLKEMEPRGFCDVVSYSTLIETFCRASNTKKAYKLFEEMRQKGIVTNV 360
Query: 336 VTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLD 395
VTFT LIKAFLREG+S++A+KLL+QM + LSPDRI YTTI+D LCKS + AYG+F D
Sbjct: 361 VTFTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGIFND 420
Query: 396 MVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKK 455
M+E ITPD ISYN+LI+GLC+S RV+EA+ L+E+M+ + PDE+TFK +IGGL++EKK
Sbjct: 421 MIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIREKK 480
Query: 456 LELACRLWDQMMEKGFTLDKTVSAALIEA 484
L A ++WDQMM+KGFTLD+ VS LI+A
Sbjct: 481 LSAAYKVWDQMMDKGFTLDRDVSDTLIKA 509
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15222150|ref|NP_172763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75200670|sp|Q9SAD9.1|PPR40_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g13040, mitochondrial; Flags: Precursor gi|4850387|gb|AAD31057.1|AC007357_6 F3F19.6 [Arabidopsis thaliana] gi|332190841|gb|AEE28962.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 291/509 (57%), Positives = 371/509 (72%), Gaps = 25/509 (4%)
Query: 1 MIQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRF 60
M Q LGA RL YR++I+NLVK+G+ID AV VFDEM S+ RVFS DYNRFIGVL+R SRF
Sbjct: 1 MHQTLGAVRLAYRSRIANLVKSGMIDNAVQVFDEMRHSSYRVFSFDYNRFIGVLVRESRF 60
Query: 61 DLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKL------------ 108
+L + Y M P+GFSL PFTYSRFISGLC+VK F LI+ LL +M+ L
Sbjct: 61 ELAEAIYWDMKPMGFSLIPFTYSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVY 120
Query: 109 ------------ALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGI 156
A++ F MV +GREPDVV+YTI+I+GL +A + AV+ W MI +G+
Sbjct: 121 LDLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGV 180
Query: 157 KPDNKACAALVVGLCGDGKVDLAYELTVGAMK-GKVEFGVLIYNALISGFCRTGRIRRAM 215
PDNKACAALVVGLC KVDLAYE+ +K +V+ ++YNALISGFC+ GRI +A
Sbjct: 181 SPDNKACAALVVGLCHARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAE 240
Query: 216 AIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGL 275
A+KS+M GCEPDLVTYN +LNYY D ML AE ++ EM GI+ D YSYNQLLK
Sbjct: 241 ALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRH 300
Query: 276 CNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDV 335
C + DK Y FMVK+ME +G D VSY+T+IE FC+ TR+AY+LFE MR++G+ ++V
Sbjct: 301 CRVSHPDKCYNFMVKEMEPRGFCDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNV 360
Query: 336 VTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLD 395
VT+T LIKAFLREG+S++A+KLL+QM + LSPDRI YTTI+D LCKS + AYGVF D
Sbjct: 361 VTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFND 420
Query: 396 MVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKK 455
M+E ITPD ISYN+LI+GLC+S RV+EA+ L+E+M+ + PDE+TFK +IGGL++ KK
Sbjct: 421 MIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKK 480
Query: 456 LELACRLWDQMMEKGFTLDKTVSAALIEA 484
L A ++WDQMM+KGFTLD+ VS LI+A
Sbjct: 481 LSAAYKVWDQMMDKGFTLDRDVSDTLIKA 509
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 225/507 (44%), Positives = 309/507 (60%), Gaps = 24/507 (4%)
Query: 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDL 62
Q + R +YR +S V+AG D + FDEM S CR F +DYNR+IGVL+++ FDL
Sbjct: 152 QGVALHRSLYRILLSGYVRAGKFDSVIETFDEMVMSGCREFGVDYNRYIGVLVKNCCFDL 211
Query: 63 VQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKL-------------- 108
V+ YY GF LTPFTYSR+IS LC+ L+ LL +MDKL
Sbjct: 212 VEKYYDMALAKGFCLTPFTYSRWISALCQSNRIELVQELLVDMDKLGCSPDIWACNIYIY 271
Query: 109 ----------ALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKP 158
AL++ KM +KG PDVVTY V+ GLC K+F +A+ WE M++ +KP
Sbjct: 272 YLCKQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKP 331
Query: 159 DNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIK 218
D +C AL+ GLC + KVD A+EL + +E V IYNALISGF R G I +A I
Sbjct: 332 DVFSCGALIFGLCKNNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKII 391
Query: 219 SFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNS 278
SFM+ NGCEPD+VTYN +LN+YC M+++AEKL+ +ME+ G+ PD YSYNQLLKGLC +
Sbjct: 392 SFMRTNGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKT 451
Query: 279 NQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTF 338
+QLDKA+ F+ ME G D VS N +I+AFCK + + A +LF+ M +G++ D VT+
Sbjct: 452 HQLDKAFAFVSDHMEVGGFCDTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADAVTY 511
Query: 339 TILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVE 398
LI G +AE+L QM + P+ LY ++ LCK A +F M++
Sbjct: 512 GTLINGLFSVGYYNLAEELFEQMLNAQIDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQ 571
Query: 399 QGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLEL 458
+ ++PD +++N LI L K SR EA++L+++M+ RG PD +TFK LI GL+ E K L
Sbjct: 572 KEVSPDTVTFNTLIYWLGKRSRAIEALNLFKDMRTRGVEPDTLTFKYLISGLLDEGKSTL 631
Query: 459 ACRLWDQMMEKGFTLDKTVSAALIEAI 485
A +W+ MME G LD+ VS LI +
Sbjct: 632 AYEVWEYMMENGIILDREVSERLISVL 658
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 226/511 (44%), Positives = 310/511 (60%), Gaps = 24/511 (4%)
Query: 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDL 62
Q + R +YR +S V+AG D + FDEM S CR F IDYNR+IGVLI++ FDL
Sbjct: 149 QGVALHRSLYRILLSGYVRAGKFDSVIGTFDEMVMSGCREFGIDYNRYIGVLIKNCCFDL 208
Query: 63 VQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKL-------------- 108
V+ YY G LTPFTYSR+IS LC+ L+ LL +MD+
Sbjct: 209 VEKYYGMALSKGLCLTPFTYSRWISALCQSNRIELVEELLADMDRFGFSPDIWACNIYID 268
Query: 109 ----------ALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKP 158
AL++ KM KG PDVVTYT V+ LC K F +AV WE M++ G+KP
Sbjct: 269 CLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEAVGLWEEMVKMGLKP 328
Query: 159 DNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIK 218
D AC AL+ GLC + KV+ A+EL + +E V IYNALISGF R G I +A I
Sbjct: 329 DVVACGALIFGLCKNSKVEEAFELASRMLSLNIELSVSIYNALISGFWRAGSIDKAYTII 388
Query: 219 SFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNS 278
SFM+ NGCEP +VTYN +LN+YC M+++AE L+ +ME+ G+ PD YSYNQLLKGLC +
Sbjct: 389 SFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMETSGVNPDRYSYNQLLKGLCKT 448
Query: 279 NQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTF 338
+QLDKA+ F+ ME G D VS N +I+AFCK + + A +LF+ M +G++ D VT+
Sbjct: 449 HQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCKVKKVKSALELFKEMDYKGMQADAVTY 508
Query: 339 TILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVE 398
LI G +AE+L QM + P+ LY ++ LCK ++ A +FL M++
Sbjct: 509 GTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIMLHHLCKVGDLKRAQKIFLHMIQ 568
Query: 399 QGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLEL 458
+ I PD+++YN LI L K+SR EA+ L+++M+ +G PD +TFK LI GL+ E + L
Sbjct: 569 KEILPDIVTYNTLIYWLGKNSRAMEALDLFKDMRTKGVEPDSLTFKYLINGLLDEGRSTL 628
Query: 459 ACRLWDQMMEKGFTLDKTVSAALIEAIHLQD 489
A +W+ MME G LD+ VS LI + L++
Sbjct: 629 AYEVWEYMMENGIILDREVSERLISVLKLKN 659
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group] gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa Japonica Group] gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa Japonica Group] gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group] gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group] gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 222/511 (43%), Positives = 303/511 (59%), Gaps = 24/511 (4%)
Query: 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDL 62
Q + R +YR ++ +AG D + FDEM S CR F +DYNRFIGV+I++ FDL
Sbjct: 154 QGVAFHRSLYRVLLAGYARAGKFDSVIETFDEMVTSGCREFGVDYNRFIGVMIKNCCFDL 213
Query: 63 VQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKL-------------- 108
V+ YY GF LTPFTYSR+I+ LC+ L+ LL +MDK
Sbjct: 214 VEKYYNMALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVH 273
Query: 109 ----------ALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKP 158
AL++ KM KG PDVVTYT V+ LC + F +AV WE M+ G+KP
Sbjct: 274 YLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKP 333
Query: 159 DNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIK 218
D AC AL+ GLC + KVD A+EL + ++ V IYNALISGF R G I +A
Sbjct: 334 DVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTV 393
Query: 219 SFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNS 278
SFM+ NGCEPD+VTYN +LN+YC M D+AE L+ +ME G+ PD YSYN LLKGLC +
Sbjct: 394 SFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKA 453
Query: 279 NQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTF 338
+QLDKA+ F+ ME G D VS N +I+AFC+ + A LF+ M +GI+ D VT+
Sbjct: 454 HQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTY 513
Query: 339 TILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVE 398
ILI G S +AE+L +QM + P+ +Y ++ LCK A +F M +
Sbjct: 514 GILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQ 573
Query: 399 QGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLEL 458
+ ++PD +++N LI L KSSR EA+ L++EM+ +G PD +TF+ +I GL+ E K L
Sbjct: 574 KEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKATL 633
Query: 459 ACRLWDQMMEKGFTLDKTVSAALIEAIHLQD 489
A +W+ MME G LD+ VS LI + L++
Sbjct: 634 AYEIWEYMMENGIILDRDVSERLISVLKLKN 664
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 493 | ||||||
| TAIR|locus:2031825 | 517 | AT1G13040 [Arabidopsis thalian | 0.937 | 0.893 | 0.508 | 2.2e-121 | |
| TAIR|locus:2026207 | 548 | AT1G62680 [Arabidopsis thalian | 0.906 | 0.815 | 0.305 | 5.9e-57 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.953 | 0.759 | 0.288 | 3.3e-56 | |
| TAIR|locus:2174165 | 504 | AT5G16640 [Arabidopsis thalian | 0.902 | 0.882 | 0.298 | 7.8e-55 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.947 | 0.639 | 0.289 | 1.6e-54 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.870 | 0.574 | 0.316 | 1.9e-53 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.904 | 0.846 | 0.278 | 1.9e-53 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.904 | 0.726 | 0.281 | 8e-53 | |
| TAIR|locus:2195047 | 621 | AT1G12620 [Arabidopsis thalian | 0.957 | 0.760 | 0.275 | 8e-53 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.890 | 0.582 | 0.299 | 1.3e-52 |
| TAIR|locus:2031825 AT1G13040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1194 (425.4 bits), Expect = 2.2e-121, P = 2.2e-121
Identities = 241/474 (50%), Positives = 323/474 (68%)
Query: 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMH 71
Y I LV+ + A ++ +M + Y+RFI L + +FDL+ M
Sbjct: 47 YNRFIGVLVRESRFELAEAIYWDMKPMGFSLIPFTYSRFISGLCKVKKFDLIDALLSDME 106
Query: 72 PLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIV 131
LGF + ++ ++ LC +N A++ F MV +GREPDVV+YTI+
Sbjct: 107 TLGFIPDIWAFNVYLDLLCR-----------ENKVGFAVQTFFCMVQRGREPDVVSYTIL 155
Query: 132 IDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKG-K 190
I+GL +A + AV+ W MI +G+ PDNKACAALVVGLC KVDLAYE+ +K +
Sbjct: 156 INGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVDLAYEMVAEEIKSAR 215
Query: 191 VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAE 250
V+ ++YNALISGFC+ GRI +A A+KS+M GCEPDLVTYN +LNYY D ML AE
Sbjct: 216 VKLSTVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAE 275
Query: 251 KLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAF 310
++ EM GI+ D YSYNQLLK C + DK Y FMVK+ME +G D VSY+T+IE F
Sbjct: 276 GVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPRGFCDVVSYSTLIETF 335
Query: 311 CKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDR 370
C+ TR+AY+LFE MR++G+ ++VVT+T LIKAFLREG+S++A+KLL+QM + LSPDR
Sbjct: 336 CRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDR 395
Query: 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEE 430
I YTTI+D LCKS + AYGVF DM+E ITPD ISYN+LI+GLC+S RV+EA+ L+E+
Sbjct: 396 IFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFED 455
Query: 431 MQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEA 484
M+ + PDE+TFK +IGGL++ KKL A ++WDQMM+KGFTLD+ VS LI+A
Sbjct: 456 MKGKECCPDELTFKFIIGGLIRGKKLSAAYKVWDQMMDKGFTLDRDVSDTLIKA 509
|
|
| TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 143/468 (30%), Positives = 247/468 (52%)
Query: 25 IDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84
++ A+ +F +M +S +D+NR + +++ ++D+V ++M LG +T++
Sbjct: 66 LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 125
Query: 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKA 144
I+ C F + LAL + KM+ G EPD VT +++G C+ A
Sbjct: 126 VINCFCCC--FQV---------SLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174
Query: 145 VQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISG 204
V + M+E G KPD A A++ LC +V+ A++ + + V+ Y AL++G
Sbjct: 175 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 234
Query: 205 FCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPD 264
C + R A + S M P+++TY+A+L+ + + EA++L EM I+PD
Sbjct: 235 LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPD 294
Query: 265 VYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKG-LRDKVSYNTVIEAFCKGGQTRRAYKLF 323
+ +Y+ L+ GLC +++D+A M M +KG L D VSYNT+I FCK + KLF
Sbjct: 295 IVTYSSLINGLCLHDRIDEANQ-MFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLF 353
Query: 324 EGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKS 383
M +RG+ + VT+ LI+ F + G A++ +QM +SPD Y ++ LC +
Sbjct: 354 REMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDN 413
Query: 384 REIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTF 443
E+ A +F DM ++ + D+++Y +I G+CK+ +V EA L+ + ++G PD VT+
Sbjct: 414 GELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTY 473
Query: 444 KLLIGGLVQEKKLELACRLWDQMMEKGF-----TL---DKTVSAALIE 483
++ GL + L L+ +M ++G TL D T+SA LI+
Sbjct: 474 TTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIK 521
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 140/485 (28%), Positives = 245/485 (50%)
Query: 4 KLGAQ--RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFD 61
KLG + + + ++ G + +AV + D M + R + + I L R
Sbjct: 133 KLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVS 192
Query: 62 LVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGR 121
+M GF TY ++ LC+ N LAL++F KM +
Sbjct: 193 EALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN-----------SALALDLFRKMEERNI 241
Query: 122 EPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYE 181
+ VV Y+IVID LCK FD A+ + M GIK D ++L+ GLC DGK D +
Sbjct: 242 KASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAK 301
Query: 182 LTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYC 241
+ + + V+ ++ALI F + G++ A + + M G PD +TYN++++ +C
Sbjct: 302 MLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC 361
Query: 242 DEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGL-RDK 300
E L EA ++ M S G EPD+ +Y+ L+ C + ++D M + +++ +KGL +
Sbjct: 362 KENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDG-MRLFREISSKGLIPNT 420
Query: 301 VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQ 360
++YNT++ FC+ G+ A +LF+ M RG+ VVT+ IL+ G A ++ +
Sbjct: 421 ITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEK 480
Query: 361 MRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR 420
M+ ++ +Y II +C + ++ A+ +F + ++G+ PDV++YN +I GLCK
Sbjct: 481 MQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGS 540
Query: 421 VSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAA 480
+SEA L+ +M+ G PD+ T+ +LI + L + L ++M GF+ D +
Sbjct: 541 LSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKM 600
Query: 481 LIEAI 485
+I+ +
Sbjct: 601 VIDML 605
|
|
| TAIR|locus:2174165 AT5G16640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 138/462 (29%), Positives = 240/462 (51%)
Query: 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF-SI-DYNRFIGVLIRHSRFDLVQFYYQQ 69
YR + N ++ +D ++ +F M Q CR SI D++R + + + ++D+V + ++Q
Sbjct: 49 YREMLRNGIRFMKLDDSLDLFFHMVQ--CRPLPSIADFSRLLSAISKMKKYDVVIYLWEQ 106
Query: 70 MHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYT 129
M LG T + ++ C +L AL KM+ G EP +VT+
Sbjct: 107 MQMLGIPHNLCTCNILLNCFCRCSQLSL-----------ALSFLGKMIKLGHEPSIVTFG 155
Query: 130 IVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKG 189
+++G C+ A+ ++ M+ G KP+ ++ GLC +VD A +L K
Sbjct: 156 SLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKD 215
Query: 190 KVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEA 249
+ V+ YN+LISG C +GR A + S M PD+ T+NA+++ E + EA
Sbjct: 216 GIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEA 275
Query: 250 EKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKG-LRDKVSYNTVIE 308
E+ EM ++PD+ +Y+ L+ GLC ++LD+A M M +KG D V+Y+ +I
Sbjct: 276 EEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEE-MFGFMVSKGCFPDVVTYSILIN 334
Query: 309 AFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSP 368
+CK + KLF M +RG+ + VT+TILI+ + R G +AE++ +M + P
Sbjct: 335 GYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHP 394
Query: 369 DRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLY 428
+ I Y ++ LC + +I A + DM + G+ D+++YN +I G+CK+ V++A +Y
Sbjct: 395 NIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIY 454
Query: 429 EEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKG 470
+ +G PD T+ ++ GL ++ A L+ +M E G
Sbjct: 455 CSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDG 496
|
|
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 141/487 (28%), Positives = 255/487 (52%)
Query: 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQ 69
+IY+ I +L K +++A+ + +EM C + +N I L + R + +
Sbjct: 253 VIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNR 312
Query: 70 MHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYT 129
M GF+ TY ++GLC++ +D A ++F+++ +P++V +
Sbjct: 313 MLIRGFAPDDITYGYLMNGLCKI----------GRVDA-AKDLFYRIP----KPEIVIFN 357
Query: 130 IVIDGLCKAKEFDKAVQAWEHMIEN-GIKPDNKACAALVVGLCGDGKVDLAYELTVGAMK 188
+I G D A M+ + GI PD +L+ G +G V LA E+ + M+
Sbjct: 358 TLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEV-LHDMR 416
Query: 189 GK-VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLD 247
K + V Y L+ GFC+ G+I A + + M +G +P+ V +N +++ +C E +
Sbjct: 417 NKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIP 476
Query: 248 EAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGL-RDKVSYNTV 306
EA ++ EM G +PDVY++N L+ GLC +++ A +++++ M ++G+ + V+YNT+
Sbjct: 477 EAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHA-LWLLRDMISEGVVANTVTYNTL 535
Query: 307 IEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNL 366
I AF + G+ + A KL M +G LD +T+ LIK R G A L +M
Sbjct: 536 INAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGH 595
Query: 367 SPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMH 426
+P I +I+ LC+S + A +MV +G TPD++++N+LINGLC++ R+ + +
Sbjct: 596 APSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLT 655
Query: 427 LYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIH 486
++ ++Q G PD VTF L+ L + + AC L D+ +E GF + + L+++I
Sbjct: 656 MFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSII 715
Query: 487 LQDAANK 493
Q+ ++
Sbjct: 716 PQETLDR 722
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 138/436 (31%), Positives = 217/436 (49%)
Query: 58 SRFDLVQFYYQQMHPLGFSLTPFTYSR---FISGLCEVKNFTLINILLDNMDKLALEVFH 114
S FDLV Y ++ + +L+ ++ F+ G+ I A VF
Sbjct: 135 SVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFK 194
Query: 115 KMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDG 174
+M+ P+V TY I+I G C A D A+ ++ M G P+ L+ G C
Sbjct: 195 EMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLR 254
Query: 175 KVDLAYELTVG-AMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTY 233
K+D ++L A+KG +E ++ YN +I+G CR GR++ + + M G D VTY
Sbjct: 255 KIDDGFKLLRSMALKG-LEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTY 313
Query: 234 NAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKME 293
N ++ YC E +A + EM G+ P V +Y L+ +C + +++A F+ +M
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFL-DQMR 372
Query: 294 AKGL-RDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSA 352
+GL ++ +Y T+++ F + G AY++ M G VVT+ LI G
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432
Query: 353 MAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALI 412
A +L M+ LSPD + Y+T++ C+S ++ A V +MVE+GI PD I+Y++LI
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492
Query: 413 NGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFT 472
G C+ R EA LYEEM G PDE T+ LI E LE A +L ++M+EKG
Sbjct: 493 QGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVL 552
Query: 473 LDKTVSAALIEAIHLQ 488
D + LI ++ Q
Sbjct: 553 PDVVTYSVLINGLNKQ 568
|
|
| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 129/464 (27%), Positives = 245/464 (52%)
Query: 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMH 71
YR + N + + ++A+ +F M +S ID+ + + V+ + +FD+V +
Sbjct: 40 YREILRNGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQ 99
Query: 72 PLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIV 131
+G S +T + ++ C+ + LA KM+ G EPD+VT+T +
Sbjct: 100 IMGVSHDLYTCNLLMNCFCQ-----------SSQPYLASSFLGKMMKLGFEPDIVTFTSL 148
Query: 132 IDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKV 191
I+G C ++A+ M+E GIKPD ++ LC +G V+ A L +
Sbjct: 149 INGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGI 208
Query: 192 EFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEK 251
V++Y +L++G C +GR R A ++ M +PD++T+NA+++ + E +AE+
Sbjct: 209 RPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEE 268
Query: 252 LVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKA-YMFMVKKMEAKG-LRDKVSYNTVIEA 309
L EM I P++++Y L+ G C +D+A MF + ME KG D V+Y ++I
Sbjct: 269 LYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYL--METKGCFPDVVAYTSLING 326
Query: 310 FCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPD 369
FCK + A K+F M ++G+ + +T+T LI+ F + G +A+++ + M + P+
Sbjct: 327 FCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPN 386
Query: 370 RILYTTIIDCLCKSREIGTAYGVFLDMVEQ---GITPDVISYNALINGLCKSSRVSEAMH 426
Y ++ CLC + ++ A +F DM ++ G+ P++ +YN L++GLC + ++ +A+
Sbjct: 387 IRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALM 446
Query: 427 LYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKG 470
++E+M+ R +T+ ++I G+ + K++ A L+ + KG
Sbjct: 447 VFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKG 490
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 129/458 (28%), Positives = 235/458 (51%)
Query: 12 YRAQISNLVKAGL-IDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQM 70
YR ++S L +D+AV +F EM +S +++++ + + + +FDLV + ++M
Sbjct: 32 YREKLSRNALLHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKM 91
Query: 71 HPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTI 130
LG S +TY+ I+ LC + AL + KM+ G P +VT
Sbjct: 92 EILGVSHNLYTYNIMINCLCRRSQLSF-----------ALAILGKMMKLGYGPSIVTLNS 140
Query: 131 VIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGK 190
+++G C +AV + M+E G +PD LV GL K A L +
Sbjct: 141 LLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG 200
Query: 191 VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAE 250
+ ++ Y A+I+G C+ G A+ + + M+ E D+V Y+ +++ C +D+A
Sbjct: 201 CQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDAL 260
Query: 251 KLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAF 310
L EM++ GI PDV++Y+ L+ LCN + A + +E K + V++N++I+AF
Sbjct: 261 NLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAF 320
Query: 311 CKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDR 370
K G+ A KLF+ M +R I+ ++VT+ LI F A+++ M + PD
Sbjct: 321 AKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDV 380
Query: 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEE 430
+ Y T+I+ CK++++ +F DM +G+ + ++Y LI+G ++S A ++++
Sbjct: 381 VTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQ 440
Query: 431 MQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMME 468
M G HP+ +T+ L+ GL + KLE A +++ + +
Sbjct: 441 MVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQK 478
|
|
| TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 134/487 (27%), Positives = 239/487 (49%)
Query: 2 IQKLGAQ--RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSR 59
I KLG + + + I+ L G + +A+ + D M + + I N + L + +
Sbjct: 133 IIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGK 192
Query: 60 FDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSK 119
+M GF TY + +C+ LA+E+ KM +
Sbjct: 193 VSDAVLLIDRMVETGFQPNEVTYGPVLKVMCK-----------SGQTALAMELLRKMEER 241
Query: 120 GREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLA 179
+ D V Y+I+IDGLCK D A + M G K D L+ G C G+ D
Sbjct: 242 KIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDG 301
Query: 180 YELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNY 239
+L +K K+ V+ ++ALI F + G++R A + M G PD VTY ++++
Sbjct: 302 AKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDG 361
Query: 240 YCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGL-R 298
+C E LD+A ++ M S G P++ ++N L+ G C +N +D + + +KM +G+
Sbjct: 362 FCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDG-LELFRKMSLRGVVA 420
Query: 299 DKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLL 358
D V+YNT+I+ FC+ G+ A +LF+ M R + D+V++ IL+ G A ++
Sbjct: 421 DTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIF 480
Query: 359 NQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKS 418
++ + D +Y II +C + ++ A+ +F + +G+ PDV +YN +I GLCK
Sbjct: 481 EKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKK 540
Query: 419 SRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVS 478
+SEA L+ +M+ G P+ T+ +LI + E + +L +++ GF++D +
Sbjct: 541 GSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTV 600
Query: 479 AALIEAI 485
+++ +
Sbjct: 601 KMVVDML 607
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 137/457 (29%), Positives = 228/457 (49%)
Query: 20 VKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRF-DLVQFYYQQMHPLGFSLT 78
++ G +D A+ + ++M + C ++ N + + R D + F + + GF
Sbjct: 235 IEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPD 294
Query: 79 PFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKA 138
+T++ ++GLC+ + K A+E+ M+ +G +PDV TY VI GLCK
Sbjct: 295 QYTFNTLVNGLCKAGHV-----------KHAIEIMDVMLQEGYDPDVYTYNSVISGLCKL 343
Query: 139 KEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELT-VGAMKGKVEFGVLI 197
E +AV+ + MI P+ L+ LC + +V+ A EL V KG + V
Sbjct: 344 GEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILP-DVCT 402
Query: 198 YNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEME 257
+N+LI G C T R AM + M+ GCEPD TYN +++ C + LDEA ++ +ME
Sbjct: 403 FNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQME 462
Query: 258 SCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGL-RDKVSYNTVIEAFCKGGQT 316
G V +YN L+ G C +N+ +A +ME G+ R+ V+YNT+I+ CK +
Sbjct: 463 LSGCARSVITYNTLIDGFCKANKTREAEEIF-DEMEVHGVSRNSVTYNTLIDGLCKSRRV 521
Query: 317 RRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTI 376
A +L + M G + D T+ L+ F R G A ++ M PD + Y T+
Sbjct: 522 EDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTL 581
Query: 377 IDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEM-QIRG 435
I LCK+ + A + + +GI +YN +I GL + + +EA++L+ EM +
Sbjct: 582 ISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNE 641
Query: 436 AHPDEVTFKLLIGGLVQEK-KLELACRLWDQMMEKGF 471
A PD V+++++ GL + A +++EKGF
Sbjct: 642 APPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGF 678
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SAD9 | PPR40_ARATH | No assigned EC number | 0.5717 | 0.9817 | 0.9361 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00030743001 | SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (519 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 493 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-32 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-30 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 9e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.004 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 3e-32
Identities = 88/379 (23%), Positives = 179/379 (47%), Gaps = 19/379 (5%)
Query: 113 FHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCG 172
F K++ R P + T+ +++ +++ D A++ + E G+K D K L+
Sbjct: 428 FAKLI---RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAK 484
Query: 173 DGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVT 232
GKVD +E+ + VE V + ALI G R G++ +A M+ +PD V
Sbjct: 485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544
Query: 233 YNAILNYYCDEV-MLDEAEKLVMEM--ESCGIEPDVYSYNQLLKGLCNSNQLDKA---YM 286
+NA+++ C + +D A ++ EM E+ I+PD + L+K N+ Q+D+A Y
Sbjct: 545 FNALISA-CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603
Query: 287 FMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFL 346
M+ + KG + Y + + + G A +++ M+++G++ D V F+ L+
Sbjct: 604 -MIHEYNIKGTPE--VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV-- 658
Query: 347 REGSSAMAEK---LLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITP 403
G + +K +L R + + Y++++ ++ A ++ D+ + P
Sbjct: 659 -AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717
Query: 404 DVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLW 463
V + NALI LC+ +++ +A+ + EM+ G P+ +T+ +L+ ++ ++ L
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777
Query: 464 DQMMEKGFTLDKTVSAALI 482
Q E G + + +
Sbjct: 778 SQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 1e-30
Identities = 89/313 (28%), Positives = 151/313 (48%), Gaps = 42/313 (13%)
Query: 111 EVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGL 170
EVFH+MV+ G E +V T+ +IDG +A + KA A+ M +KPD AL+
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA- 551
Query: 171 CGD-GKVDLAYE----------------LTVGA-MK-----GKVEFGVLIYNAL----IS 203
CG G VD A++ +TVGA MK G+V+ +Y + I
Sbjct: 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611
Query: 204 GF----------C-RTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKL 252
G C + G A++I MK G +PD V ++A+++ LD+A ++
Sbjct: 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671
Query: 253 VMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVS-YNTVIEAFC 311
+ + GI+ SY+ L+ N+ KA + + + +++ LR VS N +I A C
Sbjct: 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKA-LELYEDIKSIKLRPTVSTMNALITALC 730
Query: 312 KGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRI 371
+G Q +A ++ M+R G+ + +T++IL+ A R+ + + LL+Q + + P+ +
Sbjct: 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV 790
Query: 372 LYTTIIDCLCKSR 384
+ I LC R
Sbjct: 791 MCRCITG-LCLRR 802
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 1e-16
Identities = 24/50 (48%), Positives = 37/50 (74%)
Query: 228 PDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCN 277
PD+VTYN +++ YC + ++EA KL EM+ GI+P+VY+Y+ L+ GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 2e-16
Identities = 62/264 (23%), Positives = 120/264 (45%), Gaps = 10/264 (3%)
Query: 227 EPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYM 286
P L T+N +++ +D A +++ ++ G++ D Y L+ S ++D M
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA--M 491
Query: 287 FMV-KKMEAKGLRDKV-SYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKA 344
F V +M G+ V ++ +I+ + GQ +A+ + MR + ++ D V F LI A
Sbjct: 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551
Query: 345 FLREGSSAMAEKLLNQMRGMN--LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGI- 401
+ G+ A +L +M+ + PD I ++ + ++ A V+ + E I
Sbjct: 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611
Query: 402 -TPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELAC 460
TP+V Y +N + A+ +Y++M+ +G PDEV F L+ L+ A
Sbjct: 612 GTPEV--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669
Query: 461 RLWDQMMEKGFTLDKTVSAALIEA 484
+ ++G L ++L+ A
Sbjct: 670 EILQDARKQGIKLGTVSYSSLMGA 693
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 2e-16
Identities = 91/378 (24%), Positives = 162/378 (42%), Gaps = 68/378 (17%)
Query: 109 ALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD--NKACAAL 166
A VF KM E D+ ++ +++ G KA FD+A+ + M+ G++PD C
Sbjct: 140 AWYVFGKM----PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC--- 192
Query: 167 VVGLCGDGKVDLAY--ELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWN 224
V+ CG G DLA E+ ++ E V + NALI+ + + G + A + M
Sbjct: 193 VLRTCG-GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-- 249
Query: 225 GCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLK--GLCNSNQLD 282
D +++NA+++ Y + E +L M ++PD+ + ++ L +L
Sbjct: 250 --RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307
Query: 283 K-AYMFMVKKMEAKGLRDKVS-YNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTI 340
+ + ++VK G VS N++I+ + G A K+F M + D V++T
Sbjct: 308 REMHGYVVK----TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTA 359
Query: 341 LIKAFLREGSSAMAEKLLNQMRGMNLSPDRI----------------------------- 371
+I + + G A + M N+SPD I
Sbjct: 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419
Query: 372 ------LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAM 425
+ +I+ K + I A VF ++ E+ DVIS+ ++I GL ++R EA+
Sbjct: 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEAL 475
Query: 426 HLYEEMQIRGAHPDEVTF 443
+ +M + P+ VT
Sbjct: 476 IFFRQM-LLTLKPNSVTL 492
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 81.5 bits (201), Expect = 3e-16
Identities = 75/332 (22%), Positives = 126/332 (37%), Gaps = 45/332 (13%)
Query: 153 ENGIKPDNKACAALVVGLCGDGKVDLAYELTVGA-MKGKVEFGVLIYNALISGFCRTGRI 211
K C+ + L G+ A EL Y+AL+ I
Sbjct: 81 TQIRKSGVSLCSQ-IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSI 139
Query: 212 RRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQL 271
R A+ ++ +G EPD N +L + ML +A +L EM P+
Sbjct: 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM------PE------- 186
Query: 272 LKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGI 331
R+ S+ T+I G R A+ LF M G
Sbjct: 187 --------------------------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220
Query: 332 ELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYG 391
+ + TF ++++A GS+ ++L + + D + +ID K +I A
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280
Query: 392 VFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451
VF M E+ +++N+++ G EA+ LY EM+ G D+ TF ++I
Sbjct: 281 VFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336
Query: 452 QEKKLELACRLWDQMMEKGFTLDKTVSAALIE 483
+ LE A + ++ GF LD + AL++
Sbjct: 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 5e-15
Identities = 82/355 (23%), Positives = 147/355 (41%), Gaps = 25/355 (7%)
Query: 134 GLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGK-VDLAYELTVGAMKGKVE 192
LC + ++A++ E M E + D A AL LC + V+ + A+
Sbjct: 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALF-RLCEWKRAVEEGSRVCSRALSSHPS 118
Query: 193 FGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKL 252
GV + NA++S F R G + A + M E DL ++N ++ Y DEA L
Sbjct: 119 LGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 253 VMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR-----DKVSYNTVI 307
M G+ PDVY++ +L+ L +++ A +R D N +I
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLA-----RGREVHAHVVRFGFELDVDVVNALI 229
Query: 308 EAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLS 367
+ K G A +F+ M RR D +++ +I + G +L MR +++
Sbjct: 230 TMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVD 285
Query: 368 PDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHL 427
PD + T++I + + +V+ G DV N+LI EA +
Sbjct: 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345
Query: 428 YEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDK-TVSAAL 481
+ M+ + D V++ +I G + + A + M + + D+ T+++ L
Sbjct: 346 FSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 1e-14
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 301 VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAF 345
V+YNT+I+ +CK G+ A KLF M++RGI+ +V T++ILI
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.4 bits (166), Expect = 1e-14
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 403 PDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGL 450
PDV++YN LI+G CK +V EA+ L+ EM+ RG P+ T+ +LI GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.4 bits (166), Expect = 2e-14
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 368 PDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCK 417
PD + Y T+ID CK ++ A +F +M ++GI P+V +Y+ LI+GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 5e-14
Identities = 80/386 (20%), Positives = 160/386 (41%), Gaps = 65/386 (16%)
Query: 109 ALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVV 168
A +VF +M +K D V++T +I G K DKA++ + M ++ + PD A+++
Sbjct: 342 AEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397
Query: 169 GLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEP 228
G +D+ +L A + + V++ NALI + + I +A+ + + E
Sbjct: 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EK 453
Query: 229 DLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFM 288
D++++ +I+ EA +M ++P+ + L L
Sbjct: 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCG---- 508
Query: 289 VKKMEAKGLRDKVSY-----NTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIK 343
K++ A LR + + N +++ + + G+ A+ F + DVV++ IL+
Sbjct: 509 -KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILLT 562
Query: 344 AFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITP 403
++ G +MA +L N+M VE G+ P
Sbjct: 563 GYVAHGKGSMAVELFNRM-----------------------------------VESGVNP 587
Query: 404 DVISYNALINGLCKSSRVSEAMHLYEEMQIR-GAHPDEVTFKLLIGGLVQEKKLELACRL 462
D +++ +L+ +S V++ + + M+ + P+ + ++ L + KL A
Sbjct: 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNF 647
Query: 463 WDQMMEKGFTLDKTVSAALIEA--IH 486
++M T D V AL+ A IH
Sbjct: 648 INKM---PITPDPAVWGALLNACRIH 670
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 2e-13
Identities = 65/270 (24%), Positives = 115/270 (42%), Gaps = 14/270 (5%)
Query: 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS--IDYNRFIGVLIRHSRFDLVQFY 66
R+++ A IS ++G +D+A V EM + I + + D +
Sbjct: 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601
Query: 67 YQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVV 126
YQ +H TP Y+ ++ C K + D AL ++ M KG +PD V
Sbjct: 602 YQMIHEYNIKGTPEVYTIAVNS-CSQKG---------DWD-FALSIYDDMKKKGVKPDEV 650
Query: 127 TYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGA 186
++ ++D A + DKA + + + GIK + ++L+ A EL
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
Query: 187 MKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVML 246
K+ V NALI+ C ++ +A+ + S MK G P+ +TY+ +L +
Sbjct: 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770
Query: 247 DEAEKLVMEMESCGIEPDVYSYNQLLKGLC 276
D L+ + + GI+P++ + GLC
Sbjct: 771 DVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 2e-13
Identities = 72/333 (21%), Positives = 129/333 (38%), Gaps = 38/333 (11%)
Query: 124 DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELT 183
TY +++ K + H+ +G +PD +++ G + A L
Sbjct: 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL- 180
Query: 184 VGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNG--CEPDLVTYNAILNYYC 241
E + + +I G G R A A+ M +G EP
Sbjct: 181 ---FDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV--------- 228
Query: 242 DEVMLDEAEKLVM-----EMESC----GIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKM 292
VML + L ++ C G+ D + L+ ++ A +
Sbjct: 229 --VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA------RC 280
Query: 293 EAKGLRDK--VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGS 350
G+ +K V++N+++ + G + A L+ MR G+ +D TF+I+I+ F R
Sbjct: 281 VFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340
Query: 351 SAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNA 410
A++ + D + T ++D K + A VF M + ++IS+NA
Sbjct: 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNA 396
Query: 411 LINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTF 443
LI G R ++A+ ++E M G P+ VTF
Sbjct: 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 1e-12
Identities = 90/386 (23%), Positives = 153/386 (39%), Gaps = 60/386 (15%)
Query: 109 ALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVV 168
A VF +M + D +++ +I G + E + ++ + M E + PD +++
Sbjct: 241 ARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296
Query: 169 --GLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGC 226
L GD L E+ +K V + N+LI + G A + S M+
Sbjct: 297 ACELLGD--ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-- 352
Query: 227 EPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYM 286
D V++ A+++ Y + D+A + ME + PD + +L LD
Sbjct: 353 --DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410
Query: 287 FMVKKMEAKGLRDKVSY----NTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILI 342
+ + E KGL +SY N +IE + K +A ++F + + DV+++T +I
Sbjct: 411 -LHELAERKGL---ISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSII 462
Query: 343 KAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTI------IDCLCKSREI-------GTA 389
A QM + L P+ + I L +EI G
Sbjct: 463 AGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521
Query: 390 YGVF-----LDM-VEQGIT-----------PDVISYNALINGLCKSSRVSEAMHLYEEMQ 432
+ F LD+ V G DV+S+N L+ G + S A+ L+ M
Sbjct: 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMV 581
Query: 433 IRGAHPDEVTFKLLI-----GGLVQE 453
G +PDEVTF L+ G+V +
Sbjct: 582 ESGVNPDEVTFISLLCACSRSGMVTQ 607
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 6e-12
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 123 PDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLC 171
PDVVTY +IDG CK + ++A++ + M + GIKP+ + L+ GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 6e-12
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 334 DVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK 382
DVVT+ LI + ++G A KL N+M+ + P+ Y+ +ID LCK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 2e-11
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 195 VLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCD 242
V+ YN LI G+C+ G++ A+ + + MK G +P++ TY+ +++ C
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 2e-11
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 11/58 (18%)
Query: 80 FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCK 137
TY+ I G C+ + AL++F++M +G +P+V TY+I+IDGLCK
Sbjct: 4 VTYNTLIDGYCKKGKV-----------EEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 4e-11
Identities = 49/182 (26%), Positives = 89/182 (48%), Gaps = 11/182 (6%)
Query: 268 YNQLLKGLCNSNQLDKAYMFMVKKMEAKGL--RDKVSYNTVIEAFCKGGQTRRAYKLFEG 325
YN+LL+ + +D +++ ME +GL DK+ + +A K + A++ +
Sbjct: 377 YNRLLRDGRIKDCID-----LLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL 431
Query: 326 MRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSRE 385
+R + TF +L+ A ++L ++ L D LYTT+I KS +
Sbjct: 432 IRNPTLS----TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK 487
Query: 386 IGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKL 445
+ + VF +MV G+ +V ++ ALI+G ++ +V++A Y M+ + PD V F
Sbjct: 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNA 547
Query: 446 LI 447
LI
Sbjct: 548 LI 549
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.1 bits (129), Expect = 1e-09
Identities = 18/34 (52%), Positives = 28/34 (82%)
Query: 399 QGITPDVISYNALINGLCKSSRVSEAMHLYEEMQ 432
+G+ PDV++YN LI+GLC++ RV EA+ L +EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 3e-08
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 119 KGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHM 151
KG +PDVVTY +IDGLC+A D+AV+ + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 7e-08
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 126 VTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD 159
VTY +IDGLCKA ++A++ ++ M E GI+PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 9e-07
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 5/181 (2%)
Query: 109 ALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVV 168
AL ++++M G D T++I+I + + A QA +I G D A ALV
Sbjct: 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368
Query: 169 GLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEP 228
G+++ A + M K ++ +NALI+G+ GR +A+ + M G P
Sbjct: 369 LYSKWGRMEDARNV-FDRMPRK---NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424
Query: 229 DLVTYNAILNYYCDEVMLDEAEKLVMEM-ESCGIEPDVYSYNQLLKGLCNSNQLDKAYMF 287
+ VT+ A+L+ + ++ ++ M E+ I+P Y +++ L LD+AY
Sbjct: 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484
Query: 288 M 288
+
Sbjct: 485 I 485
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 1e-06
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 224 NGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEME 257
G +PD+VTYN +++ C +DEA +L+ EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 2e-06
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 329 RGIELDVVTFTILIKAFLREGSSAMAEKLLNQMR 362
+G++ DVVT+ LI R G A +LL++M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 301 VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDV 335
V+YNT+I+ CK G+ A +LF+ M+ RGIE DV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 304 NTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILI-----KAFLREGSSAMAEKLL 358
N+ + A C GQ +A KL E M+ + +D + L K + EGS + + L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCS-RAL 113
Query: 359 NQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKS 418
+ + + L ++ + E+ A+ VF M E+ D+ S+N L+ G K+
Sbjct: 114 SSHPSLGVR----LGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKA 165
Query: 419 SRVSEAMHLYEEMQIRGAHPDEVTF 443
EA+ LY M G PD TF
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTF 190
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 7e-06
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 406 ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDE 440
++YN LI+GLCK+ RV EA+ L++EM+ RG PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 9e-06
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 125 VVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKP 158
+ TY ++ L KA + D A+ E M +G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 5/156 (3%)
Query: 293 EAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRG-IELDVVTFTILIKAFLREGSS 351
+ + + VS + IE G+ R A +LFE + L T+ L++A + S
Sbjct: 80 DTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSI 139
Query: 352 AMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNAL 411
+ + + PD+ + ++ K + A +F +M E+ + S+ +
Sbjct: 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTI 195
Query: 412 INGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLI 447
I GL + EA L+ EM G+ + TF +++
Sbjct: 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 2e-05
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 295 KGLR-DKVSYNTVIEAFCKGGQTRRAYKLFEGMR 327
KGL+ D V+YNT+I+ C+ G+ A +L + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDV 405
+ Y T+ID LCK+ + A +F +M E+GI PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 301 VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGI 331
V+YN++I +CK G+ A +LF+ M+ +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 13/30 (43%), Positives = 25/30 (83%)
Query: 406 ISYNALINGLCKSSRVSEAMHLYEEMQIRG 435
++YN+LI+G CK+ ++ EA+ L++EM+ +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 4e-05
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 260 GIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKME 293
G++PDV +YN L+ GLC + ++D+A + +ME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVEL-LDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 4e-05
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 126 VTYTIVIDGLCKAKEFDKAVQAWEHMIENGI 156
VTY +I G CKA + ++A++ ++ M E G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 9e-05
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 231 VTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDV 265
VTYN +++ C ++EA +L EM+ GIEPDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 438 PDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLD 474
PD VT+ LI G ++ K+E A +L+++M ++G +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPN 37
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 9e-04
Identities = 51/187 (27%), Positives = 77/187 (41%), Gaps = 28/187 (14%)
Query: 93 KNFTLINILLDNMDK-----LALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQA 147
K+ NILL +A+E+F++MV G PD VT+ + LC Q
Sbjct: 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL---LCACSRSGMVTQG 608
Query: 148 WE--HMIEN--GIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALIS 203
E H +E I P+ K A +V L GK+ AY K + ++ AL++
Sbjct: 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI---NKMPITPDPAVWGALLN 665
Query: 204 GFCRTGRIRR-----AMAIKSFMKWNGCEPDLVTYNAIL-NYYCDEVMLDEAEKLVMEME 257
C RI R +A + + +P+ V Y +L N Y D DE ++ M
Sbjct: 666 A-C---RIHRHVELGELAAQHIFE---LDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718
Query: 258 SCGIEPD 264
G+ D
Sbjct: 719 ENGLTVD 725
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 336 VTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPD 369
VT+ LI + G A +L +M+ + PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 197 IYNALISGFCRTGRIRRAMAIKSFMKWNGCEPD 229
YN LI G C+ GR+ A+ + MK G EPD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 405 VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP 438
+ +YNAL+ L K+ A+ + EEM+ G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 441 VTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLD 474
VT+ LI GL + ++E A L+ +M E+G D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 231 VTYNAILNYYCDEVMLDEAEKLVMEMESCGI 261
VTYN++++ YC L+EA +L EM+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 34.6 bits (81), Expect = 0.004
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 364 MNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMV 397
L PD + Y T+ID LC++ + A + +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.4 bits (80), Expect = 0.004
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 197 IYNALISGFCRTGRIRRAMAIKSFMKWNGC 226
YN+LISG+C+ G++ A+ + MK G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 493 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.89 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.85 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.84 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.84 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.82 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.81 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.8 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.78 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.78 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.78 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.75 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.74 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.72 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.72 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.72 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.7 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.7 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.69 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.69 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.69 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.65 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.65 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.64 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.63 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.63 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.58 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.57 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.57 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.55 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.54 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.54 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.53 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.52 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.52 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.51 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.49 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.49 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.48 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.48 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.47 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.46 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.45 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.43 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.4 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.4 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.38 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.38 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.37 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.36 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.31 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.31 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.28 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.27 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.26 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.21 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.2 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.19 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.18 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.12 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.1 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.09 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.08 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.08 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.06 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.05 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.05 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.03 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.02 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.01 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.01 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.01 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.0 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.97 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.94 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.93 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.92 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.9 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.89 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.88 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.86 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.85 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.84 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.84 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.81 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.76 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.75 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.73 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.71 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.71 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.7 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.7 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.69 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.69 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.67 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.67 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.66 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.64 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.63 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.6 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.59 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.57 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.56 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.55 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.44 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.39 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.35 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.31 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.3 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.28 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.27 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.18 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.17 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.17 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.15 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.13 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.12 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.09 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.09 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.08 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.08 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.08 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.08 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.04 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.0 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.98 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.96 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.95 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.95 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.93 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.92 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.92 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.92 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.91 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.9 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.9 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.89 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.89 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.89 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.88 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.86 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.85 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.84 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.83 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.82 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.79 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.79 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.78 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.77 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.77 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.76 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.72 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.7 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.65 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.64 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.64 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.63 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.61 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.57 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.57 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.54 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.54 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.5 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.5 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.48 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.44 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.37 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.35 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.35 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.3 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.25 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.25 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.24 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.19 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.16 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.14 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.14 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.14 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.13 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.1 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.1 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.09 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.07 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.07 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.0 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.91 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.91 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.82 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.81 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.71 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.69 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.67 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.62 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.6 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.6 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.6 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.58 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.47 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.45 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.45 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.4 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.39 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.38 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.38 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.25 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.2 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.13 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.12 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.99 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.97 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.89 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.82 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.81 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.8 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.78 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.76 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.76 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.72 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.7 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.69 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.68 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.67 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.66 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.56 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.47 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.45 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.44 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.34 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.29 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.13 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.13 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.07 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.05 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.04 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.9 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.87 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 94.79 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.78 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.76 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.71 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.69 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.45 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.45 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 94.33 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.26 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.94 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.93 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.81 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.66 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.64 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.57 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.56 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.5 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.25 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.17 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 93.06 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.73 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.71 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.67 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.66 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.61 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 92.54 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.47 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 92.06 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.91 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 91.85 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.8 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.69 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.66 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.66 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.58 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.51 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.45 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.32 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.07 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 91.04 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 91.01 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 90.99 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 90.75 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 90.46 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.37 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.08 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 89.91 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.9 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.62 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.53 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.33 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.88 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 88.5 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 88.33 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.11 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.96 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.96 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.78 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.61 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.6 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 87.56 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.04 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.68 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 85.65 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 85.52 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.11 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 85.03 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 84.81 | |
| PRK09687 | 280 | putative lyase; Provisional | 84.74 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.67 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 84.51 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 83.08 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 82.65 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 82.61 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 82.5 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 82.05 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.04 | |
| PF11848 | 48 | DUF3368: Domain of unknown function (DUF3368); Int | 81.98 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 81.74 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 81.56 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 81.49 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 81.31 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 81.08 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 80.67 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 80.3 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-70 Score=531.05 Aligned_cols=470 Identities=18% Similarity=0.294 Sum_probs=432.0
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNC-RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
..++...|..+...+++.|++++|+++|++|.+.|. +++...++.++.+|.+.|..++|..+|+.|.. |+..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 345677788899999999999999999999999884 46777778888999999999999999998864 8999999
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhH
Q 043480 84 RFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKAC 163 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 163 (493)
.++.+|++.|++ +.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|
T Consensus 442 ~LL~a~~k~g~~-----------e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTy 510 (1060)
T PLN03218 442 MLMSVCASSQDI-----------DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF 510 (1060)
T ss_pred HHHHHHHhCcCH-----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 999999999999 778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHH
Q 043480 164 AALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKW--NGCEPDLVTYNAILNYYC 241 (493)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~ 241 (493)
+.++.+|++.|++++|.++|..|...++.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|+
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~ 590 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999976 578999999999999999
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 043480 242 DEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYK 321 (493)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 321 (493)
+.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|..+|.+|...+..||..+|+.++.+|++.|++++|.+
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCC
Q 043480 322 LFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGI 401 (493)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 401 (493)
+++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.++.||..+|+.+|.+|++.|++++|.++|++|.+.|+
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c-------------------CCHHH
Q 043480 402 TPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQ----E-------------------KKLEL 458 (493)
Q Consensus 402 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~ 458 (493)
.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ + +..++
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~ 830 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSW 830 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHH
Confidence 999999999999999999999999999999999999999999999876542 1 12467
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhch
Q 043480 459 ACRLWDQMMEKGFTLDKTVSAALIEAIHLQD 489 (493)
Q Consensus 459 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 489 (493)
|..+|++|.+.|+.||..+|..++.++.+.+
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~ 861 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPH 861 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccc
Confidence 9999999999999999999999997775554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-69 Score=524.11 Aligned_cols=467 Identities=19% Similarity=0.274 Sum_probs=432.7
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
+++..+++.++..|.+.|.+++|.++|+.|.. |+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 403 ~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsL 478 (1060)
T PLN03218 403 DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478 (1060)
T ss_pred CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 46777888899999999999999999998864 88999999999999999999999999999999999999999999
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 043480 86 ISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAA 165 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (493)
+.+|++.|++ +.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.
T Consensus 479 I~~y~k~G~v-----------d~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYns 547 (1060)
T PLN03218 479 ISTCAKSGKV-----------DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNA 547 (1060)
T ss_pred HHHHHhCcCH-----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999999 77889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCchhHHHHHHHHHHh--CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 043480 166 LVVGLCGDGKVDLAYELTVGAMK--GKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDE 243 (493)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 243 (493)
++.+|++.|++++|.++|.+|.. .++.||..+|+.++.+|++.|++++|.++|+.|.+.|++|+..+|+.+|.+|++.
T Consensus 548 LI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~ 627 (1060)
T PLN03218 548 LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 99999999999999999999976 5688999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 043480 244 VMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLF 323 (493)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 323 (493)
|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.+..|+..+|+.+|.+|++.|++++|.++|
T Consensus 628 G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf 707 (1060)
T PLN03218 628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC
Q 043480 324 EGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITP 403 (493)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 403 (493)
++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.+++.+|.+.|+.|
T Consensus 708 ~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~p 787 (1060)
T PLN03218 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHHh----c-------------------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043480 404 DVISYNALINGLCK----S-------------------SRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELAC 460 (493)
Q Consensus 404 ~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 460 (493)
|..+|+.++..|.+ + +..+.|..+|++|.+.|+.||..+|..++.++++.+..+.+.
T Consensus 788 d~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~ 867 (1060)
T PLN03218 788 NLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRN 867 (1060)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHH
Confidence 99999999866432 1 124679999999999999999999999998888889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 043480 461 RLWDQMMEKGFTLDKTVSAALIEAIHL 487 (493)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~ll~~~~~ 487 (493)
.+++.|...+..|+..+|++++.++..
T Consensus 868 ~m~~~m~~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 868 RLIENLGISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred HHHHHhccCCCCcchhhhHHHHHhhcc
Confidence 999999888888999999999999864
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-68 Score=528.04 Aligned_cols=474 Identities=19% Similarity=0.243 Sum_probs=401.6
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
++|..+|+.++.+|++.|++++|+++|++|...|+.||..+|+.++.+|...+++..+.+++..+.+.|+.|+..+++.|
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 46777777777777777777777777777777777777777777777777777777777777777777777788888888
Q ss_pred HHHHhccCChhhHHHHHHHHH--------------------HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHH
Q 043480 86 ISGLCEVKNFTLINILLDNMD--------------------KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAV 145 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~--------------------~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 145 (493)
+.+|++.|+++.|..+++.+. ++|+++|++|...|+.||..+|+.++.+|.+.|+++.|.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 888889999999988888775 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043480 146 QAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNG 225 (493)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 225 (493)
+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+++. .||..+|+.++.+|.+.|++++|+++|++|.+.|
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999986 5788899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 043480 226 CEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNT 305 (493)
Q Consensus 226 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 305 (493)
+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|+++.+ +|..+|+.
T Consensus 385 ~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~ 460 (857)
T PLN03077 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTS 460 (857)
T ss_pred CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988754 58889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------------------
Q 043480 306 VIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNL------------------- 366 (493)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------- 366 (493)
++.+|++.|+.++|.++|++|.. +++||..||+.++.+|++.|+.+.+.+++..+.+.|+
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~ 539 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC
Confidence 99999999999999999999975 4888888888877777666666666666665555544
Q ss_pred -----------CCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH-Hc
Q 043480 367 -----------SPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQ-IR 434 (493)
Q Consensus 367 -----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~ 434 (493)
.+|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.
T Consensus 540 ~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 540 MNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 456677777777777888888888888888888888888888888888888888888888888887 56
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhchhc
Q 043480 435 GAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDAA 491 (493)
Q Consensus 435 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 491 (493)
|+.|+..+|+.++++|.+.|++++|.+++++| +++||..+|.+|+.+|+..++.
T Consensus 620 gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCh
Confidence 77888888888888888888888888888877 5778888888888888766654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-66 Score=512.56 Aligned_cols=470 Identities=20% Similarity=0.241 Sum_probs=432.4
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
.++..+++.++.+|++.|+++.|+++|++|. +||..+|+.++.+|.+.|++++|+++|++|...|+.||..+|+.+
T Consensus 118 ~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~l 193 (857)
T PLN03077 118 SLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCV 193 (857)
T ss_pred CCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 4677889999999999999999999999995 467999999999999999999999999999999999999999999
Q ss_pred HHHHhccCChhhHHHHHHHHH------------------------HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCH
Q 043480 86 ISGLCEVKNFTLINILLDNMD------------------------KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEF 141 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~------------------------~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 141 (493)
+++|...+++..+.+++..+. +.|.++|++| ..||..+||.+|.+|++.|++
T Consensus 194 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m----~~~d~~s~n~li~~~~~~g~~ 269 (857)
T PLN03077 194 LRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGEC 269 (857)
T ss_pred HHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC----CCCCcchhHHHHHHHHhCCCH
Confidence 999999999998888877665 7889999998 567899999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 142 DKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFM 221 (493)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 221 (493)
++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|..||..+|+.++.+|++.|++++|.++|++|
T Consensus 270 ~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 349 (857)
T PLN03077 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh
Q 043480 222 KWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKV 301 (493)
Q Consensus 222 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 301 (493)
. .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.+++..+.+.+..++..
T Consensus 350 ~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 350 E----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred C----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 7 689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLC 381 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (493)
+|+.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.+ +++||..+|+.++.+|+
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 999999999999999999999999964 5888999999999999999999999999986 57999999988887777
Q ss_pred ccCCHhHHHHHHHHHHhCCC------------------------------CCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043480 382 KSREIGTAYGVFLDMVEQGI------------------------------TPDVISYNALINGLCKSSRVSEAMHLYEEM 431 (493)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~------------------------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 431 (493)
+.|+++.+.+++..+.+.|+ .||..+|+.++.+|++.|+.++|.++|++|
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 76666666666666655544 467778888999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhhchhcc
Q 043480 432 QIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMM-EKGFTLDKTVSAALIEAIHLQDAAN 492 (493)
Q Consensus 432 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~ 492 (493)
.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|..++.+|.+.|..+
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~ 642 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT 642 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999998 5699999999999999999988764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=490.18 Aligned_cols=457 Identities=18% Similarity=0.285 Sum_probs=345.0
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSN-CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
+...|+.++..|.+.|++++|+++|+.|...+ ..|+..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 44578999999999999999999999998754 57889999999999999999999999999999999999999999999
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAAL 166 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (493)
.+|++.|++ +.|.++|++| ..||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|..+
T Consensus 166 ~~y~k~g~~-----------~~A~~lf~~m----~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 230 (697)
T PLN03081 166 LMHVKCGML-----------IDARRLFDEM----PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230 (697)
T ss_pred HHHhcCCCH-----------HHHHHHHhcC----CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH
Confidence 999999999 5566667666 3467777777777777777777777777777777777777777777
Q ss_pred HHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 043480 167 VVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVML 246 (493)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 246 (493)
+.+++..|..+.+.+++..+.+.+..++..+|+.++.+|++.|++++|.++|++|. ++|..+|+.++.+|++.|++
T Consensus 231 l~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~ 306 (697)
T PLN03081 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYS 306 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCH
Confidence 77777777777777777777777777777777777777777777777777777775 45677777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 043480 247 DEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGM 326 (493)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 326 (493)
++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..+.+.+..+|..+|+.++.+|++.|++++|.++|++|
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 77777777777777777777777777777777777777777777777776677777777777777777777777777776
Q ss_pred HHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHh-CCCCCCH
Q 043480 327 RRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVE-QGITPDV 405 (493)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~ 405 (493)
.+ ||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+.
T Consensus 387 ~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 387 PR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred CC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 53 466777777777777777777777777777777777777777777777777777777777777764 4677777
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 043480 406 ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLD-KTVSAALIEA 484 (493)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~ 484 (493)
.+|+.++.+|++.|++++|.+++++| ++.|+..+|+.|+.+|...|+++.|.++++++.+ +.|+ ..+|..++..
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNL 537 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHH
Confidence 77777777777777777777776654 3567777777777777777777777777777653 3443 4567777777
Q ss_pred Hhhchhcc
Q 043480 485 IHLQDAAN 492 (493)
Q Consensus 485 ~~~~~~~~ 492 (493)
|.+.|+++
T Consensus 538 y~~~G~~~ 545 (697)
T PLN03081 538 YNSSGRQA 545 (697)
T ss_pred HHhCCCHH
Confidence 77766654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=485.08 Aligned_cols=440 Identities=16% Similarity=0.250 Sum_probs=422.6
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
..+|..+|+.++.+|.+.++++.|.+++..|.+.|..||..+|+.++.+|.+.|++++|.++|++|. .||..+|+.
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~ 194 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGT 194 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHH
Confidence 4579999999999999999999999999999999999999999999999999999999999999996 489999999
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACA 164 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 164 (493)
++.+|++.|++ ++|+++|++|.+.|..|+..+|+.++.++.+.|..+.+.+++..+.+.|+.||..+++
T Consensus 195 li~~~~~~g~~-----------~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n 263 (697)
T PLN03081 195 IIGGLVDAGNY-----------REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263 (697)
T ss_pred HHHHHHHCcCH-----------HHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHH
Confidence 99999999999 7888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 043480 165 ALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEV 244 (493)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 244 (493)
.++.+|++.|++++|.++|+.+. ++|..+||.++.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999986 56899999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 043480 245 MLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFE 324 (493)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 324 (493)
++++|.+++..|.+.|++||..+++.++.+|++.|++++|.++|+++.+ +|..+||.+|.+|++.|+.++|.++|+
T Consensus 340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998864 699999999999999999999999999
Q ss_pred HHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC
Q 043480 325 GMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRG-MNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITP 403 (493)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 403 (493)
+|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+ .++.|+..+|+.++.+|++.|++++|.+++++| ++.|
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p 492 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKP 492 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCC
Confidence 999999999999999999999999999999999999986 699999999999999999999999999999876 5789
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 043480 404 DVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFT 472 (493)
Q Consensus 404 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 472 (493)
+..+|+.|+.+|...|+++.|..+++++.+. .| +..+|..|++.|.+.|++++|.++++.|.+.|++
T Consensus 493 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 493 TVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999999999999764 55 5789999999999999999999999999999875
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=276.06 Aligned_cols=476 Identities=11% Similarity=0.019 Sum_probs=331.7
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCC--------
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG-------- 74 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------- 74 (493)
+..|.++.++..++..+.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|...++.+.+..
T Consensus 357 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 435 (899)
T TIGR02917 357 GLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADL 435 (899)
T ss_pred hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHH
Confidence 3445566666777777777777777777777766654 4445555555555555666665555555554432
Q ss_pred -------------------------CCcChhhHHHHHHHHhccCChhhHHHHHHHHH-----------------------
Q 043480 75 -------------------------FSLTPFTYSRFISGLCEVKNFTLINILLDNMD----------------------- 106 (493)
Q Consensus 75 -------------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----------------------- 106 (493)
.++++.++..+..++...|+++.|...+++..
T Consensus 436 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 436 LLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCH
Confidence 12344555556666666666665555555443
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHH
Q 043480 107 KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGA 186 (493)
Q Consensus 107 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 186 (493)
+.|.+.++++... .+.+..++..+...+.+.|++++|...++++...+ +.+...+..++..+...|++++|..+++.+
T Consensus 516 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 516 DDAIQRFEKVLTI-DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455666666554 23355566666666666666666666666665543 234455666666677777777777777766
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChh
Q 043480 187 MKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVY 266 (493)
Q Consensus 187 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 266 (493)
.+.. +.+...|..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..
T Consensus 594 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 670 (899)
T TIGR02917 594 ADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTE 670 (899)
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHH
Confidence 6543 4456667777777777777777777777776553 4455666667777777777777777777776543 34466
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHH
Q 043480 267 SYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFL 346 (493)
Q Consensus 267 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (493)
.+..+...+...|++++|..++..+....+ .+...+..+...+...|++++|.+.|+.+...+ |+..++..+..++.
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 747 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHH
Confidence 667777777777777777777777766543 355667777777888888888888888887763 34466677778888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 043480 347 REGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMH 426 (493)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (493)
..|++++|...++.+.+.. +.+...+..+...|...|++++|...|+++.+.. +++..+++.+...+...|+ .+|+.
T Consensus 748 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 8888888888888887755 5677888888888888899999999999888764 5577788888888888888 77999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhchhcc
Q 043480 427 LYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDAAN 492 (493)
Q Consensus 427 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 492 (493)
+++++.+.... ++.++..+..++...|++++|.+.++++++.+. .+..++..+..++...|..+
T Consensus 825 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~ 888 (899)
T TIGR02917 825 YAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKA 888 (899)
T ss_pred HHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHH
Confidence 99888775322 677788889999999999999999999998753 48899999999999888754
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=272.97 Aligned_cols=473 Identities=14% Similarity=0.058 Sum_probs=361.3
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
..|.++..+..++..+.+.|++++|+..++.+.+.+ +.+...+..+..++.+.|++++|.++|+++.+.. +.+...+.
T Consensus 324 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 401 (899)
T TIGR02917 324 YAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAART 401 (899)
T ss_pred hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 356677778888888899999999999998888775 6677788888889999999999999999887764 44566777
Q ss_pred HHHHHHhccCChhhHHHHHHHHH-----------------------HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 043480 84 RFISGLCEVKNFTLINILLDNMD-----------------------KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKE 140 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~-----------------------~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 140 (493)
.+..++...|+++.|...++... +.|..+++.+... .+.+..++..+...+...|+
T Consensus 402 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 480 (899)
T TIGR02917 402 QLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGD 480 (899)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCC
Confidence 78888888888888887777654 5677777777664 45577788888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043480 141 FDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSF 220 (493)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 220 (493)
+++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.... +.+..++..+...+.+.|+.++|..++++
T Consensus 481 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 481 LAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEK 558 (899)
T ss_pred HHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998888753 3355677778888888888888988888887765 45677788888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh
Q 043480 221 MKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDK 300 (493)
Q Consensus 221 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 300 (493)
+...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...|..+..++...|++++|...+.++....+. +.
T Consensus 559 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 635 (899)
T TIGR02917 559 AAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SA 635 (899)
T ss_pred HHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence 87664 5566677778888888888888888888887643 456777888888888888888888888888766543 56
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 043480 301 VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCL 380 (493)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (493)
..+..+..++...|++++|..+++++.+.. +.+..++..+...+...|++++|..+++.+.+.. +.+...+..+...+
T Consensus 636 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 713 (899)
T TIGR02917 636 LALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLY 713 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHH
Confidence 667778888888888888888888887653 3356677777777888888888888888877665 55667777777777
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043480 381 CKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELAC 460 (493)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 460 (493)
...|++++|...++.+.+. .|+..++..+..++...|++++|.+.++++.+.. +.+...+..+...|...|++++|.
T Consensus 714 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~ 790 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAI 790 (899)
T ss_pred HHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHH
Confidence 7888888888888887765 3444666677777777788888888777777653 226777777777777788888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhchh
Q 043480 461 RLWDQMMEKGFTLDKTVSAALIEAIHLQDA 490 (493)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 490 (493)
+.++++.+.. +.+..++..+...+...|+
T Consensus 791 ~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 791 KHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 8888777653 4456666666666655544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-23 Score=215.66 Aligned_cols=463 Identities=11% Similarity=0.009 Sum_probs=316.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 13 RAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSID-YNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 13 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
..++..+.+.|++++|++.|+.+.+.+ +++... ...........|++++|+..++++.+.. +.++..+..+...+..
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHc
Confidence 455667888999999999999998775 444321 1122222334588999999999998875 4566677788888888
Q ss_pred cCChhhHHHHHHHHHH-------HH----------------HHHHHHHHhC--------------------CCCCCHhhH
Q 043480 92 VKNFTLINILLDNMDK-------LA----------------LEVFHKMVSK--------------------GREPDVVTY 128 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~-------~a----------------~~~~~~~~~~--------------------g~~~~~~~~ 128 (493)
.|+.++|...++++.. .+ ...+...... ...|... .
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~ 272 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-A 272 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-H
Confidence 8999888888876531 01 1111111110 0001100 0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCC-hh-----------
Q 043480 129 TIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFG-VL----------- 196 (493)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~----------- 196 (493)
......+...|++++|+..|++.++.. +.+..++..+...+.+.|++++|+..|++..+...... ..
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 122445667888999999998888753 23677888888888888999999988888887542211 11
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHH------
Q 043480 197 -IYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYN------ 269 (493)
Q Consensus 197 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------ 269 (493)
........+.+.|++++|...|+++.... +.+...+..+...+...|++++|++.|+++.+.. +.+...+.
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 11223556778888888888888888764 4556667777888888888888888888877643 12222221
Q ss_pred ------------------------------------HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 043480 270 ------------------------------------QLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKG 313 (493)
Q Consensus 270 ------------------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (493)
.+...+...|++++|+..+++.+...+. +...+..+...|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 1233455678999999999998887654 666777788888999
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHhHHHHHH--------------------------------------------HHHHHcC
Q 043480 314 GQTRRAYKLFEGMRRRGIELDVVTFTILI--------------------------------------------KAFLREG 349 (493)
Q Consensus 314 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--------------------------------------------~~~~~~~ 349 (493)
|++++|...++++.+.... +...+..+. ..+...|
T Consensus 509 G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 9999999999988765322 333222222 2334445
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 043480 350 SSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYE 429 (493)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (493)
+.++|..+++ ..+.+...+..+...+.+.|++++|...|+++++.. +.+...+..++..+...|++++|++.++
T Consensus 588 ~~~eA~~~l~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 588 KEAEAEALLR-----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred CHHHHHHHHH-----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555555544 124566677788888999999999999999999863 4467888999999999999999999999
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHhhchhc
Q 043480 430 EMQIRGAHP-DEVTFKLLIGGLVQEKKLELACRLWDQMMEKGF--TL---DKTVSAALIEAIHLQDAA 491 (493)
Q Consensus 430 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~---~~~~~~~ll~~~~~~~~~ 491 (493)
...+. .| +...+..+..++...|++++|.++++++....- +| +..++..+...+...|+.
T Consensus 662 ~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~ 727 (1157)
T PRK11447 662 KLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQP 727 (1157)
T ss_pred HHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCH
Confidence 88764 33 567778888999999999999999999987521 12 123455555556555543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-23 Score=212.94 Aligned_cols=467 Identities=13% Similarity=0.013 Sum_probs=320.6
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhH----------------HHHHHHHHhcCChhHHHHH
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDY----------------NRFIGVLIRHSRFDLVQFY 66 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~a~~~ 66 (493)
...|.|+.++..++..+.+.|+.++|.+.+++..+.+ |.+...+ ......+...|++++|++.
T Consensus 56 ~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~ 134 (1157)
T PRK11447 56 LIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALAS 134 (1157)
T ss_pred ccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHH
Confidence 3467788888888999999999999999999988876 4444332 2334467788999999999
Q ss_pred HHHhccCCCCcChhh-HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHH
Q 043480 67 YQQMHPLGFSLTPFT-YSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAV 145 (493)
Q Consensus 67 ~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~ 145 (493)
|+.+.+.+ +|+... ...+.......++. +.|++.++++... .+.+...+..+...+...|++++|+
T Consensus 135 ~~~~l~~~-p~~~~la~~y~~~~~~~~g~~-----------~~A~~~L~~ll~~-~P~~~~~~~~LA~ll~~~g~~~eAl 201 (1157)
T PRK11447 135 YDKLFNGA-PPELDLAVEYWRLVAKLPAQR-----------PEAINQLQRLNAD-YPGNTGLRNTLALLLFSSGRRDEGF 201 (1157)
T ss_pred HHHHccCC-CCChHHHHHHHHHHhhCCccH-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHccCCHHHHH
Confidence 99988764 334321 11111222234666 6677888888775 3446777888888999999999999
Q ss_pred HHHHHHHHCCC------------------C--------------CCHHhH---------------------HHHHHHHhc
Q 043480 146 QAWEHMIENGI------------------K--------------PDNKAC---------------------AALVVGLCG 172 (493)
Q Consensus 146 ~~~~~~~~~~~------------------~--------------~~~~~~---------------------~~l~~~~~~ 172 (493)
+.++++..... . |+...+ ......+..
T Consensus 202 ~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~ 281 (1157)
T PRK11447 202 AVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVD 281 (1157)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 99988754321 0 110000 011344567
Q ss_pred cCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHH------------HHHHH
Q 043480 173 DGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEP-DLVTYN------------AILNY 239 (493)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~------------~ll~~ 239 (493)
.|++++|+..|++.++.. +.+..++..+...+.+.|++++|+..|++..+..... ....+. .....
T Consensus 282 ~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 899999999999998865 4577888899999999999999999999988763211 111121 22345
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHH-------------
Q 043480 240 YCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTV------------- 306 (493)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------- 306 (493)
+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|+..|+++....+. +...+..+
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHH
Confidence 678999999999999998764 345667778889999999999999999999876543 23222222
Q ss_pred -----------------------------HHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHH
Q 043480 307 -----------------------------IEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKL 357 (493)
Q Consensus 307 -----------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 357 (493)
...+...|++++|++.|++..+..+. +...+..+...|...|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 23344568888888888888876432 566677788888888999999988
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhC--------------------------------------
Q 043480 358 LNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQ-------------------------------------- 399 (493)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------------------------- 399 (493)
++.+.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 88887643 334333333333334444444444444332110
Q ss_pred -CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHH
Q 043480 400 -GITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLD-KTV 477 (493)
Q Consensus 400 -~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~ 477 (493)
..+++...+..+...+...|++++|+..|++..+..+. +...+..++..+...|++++|.+.++.+.+. .|+ ...
T Consensus 597 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~ 673 (1157)
T PRK11447 597 RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNT 673 (1157)
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHH
Confidence 02334456667777888888999999999888875322 6788888888898999999999999887753 333 445
Q ss_pred HHHHHHHHhhchhc
Q 043480 478 SAALIEAIHLQDAA 491 (493)
Q Consensus 478 ~~~ll~~~~~~~~~ 491 (493)
+..+..++...|+.
T Consensus 674 ~~~la~~~~~~g~~ 687 (1157)
T PRK11447 674 QRRVALAWAALGDT 687 (1157)
T ss_pred HHHHHHHHHhCCCH
Confidence 55555566555543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-24 Score=186.94 Aligned_cols=446 Identities=15% Similarity=0.098 Sum_probs=366.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
...|+.-..+.|++.+|.+.-..+-+.+ +.+......+-..+.+..+++.....-...++.. +--..+|+.+.+.+..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4567777888999999999988877766 4445555555567777777777666555554443 4456789999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHHH
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNK-ACAALVVGL 170 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~ 170 (493)
.|++ +.|+..++.+++. .+..+..|..+..++...|+.+.|.+.|...++. .|+.. ..+.+....
T Consensus 129 rg~~-----------~~al~~y~~aiel-~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 129 RGQL-----------QDALALYRAAIEL-KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL 194 (966)
T ss_pred hchH-----------HHHHHHHHHHHhc-CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence 9999 7888899999885 3446789999999999999999999999998875 46544 344555666
Q ss_pred hccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 043480 171 CGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAE 250 (493)
Q Consensus 171 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 250 (493)
-..|++++|...+.+.++.. +--..+|+.|...+-.+|+...|+..|++..+.. +.=...|-.|...|...+.+++|.
T Consensus 195 ka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHH
Confidence 67899999999999998864 3345689999999999999999999999998763 333567888999999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043480 251 KLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRG 330 (493)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 330 (493)
..+.+..... +.....+..+...|...|..+.|+..+++.+...+. =+..|+.|..++-..|++.+|++.|.+.....
T Consensus 273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 9999887643 345667788888899999999999999999987654 56689999999999999999999999998874
Q ss_pred CCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCH-hhHH
Q 043480 331 IELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDV-ISYN 409 (493)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~ 409 (493)
+ ......+.|...+...|.++.|.++|....+.. +.-....+.|...|-+.|++++|...|++.+. +.|+. ..|+
T Consensus 351 p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~ 426 (966)
T KOG4626|consen 351 P-NHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALS 426 (966)
T ss_pred C-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHH
Confidence 3 367788999999999999999999999988754 34456789999999999999999999999997 56764 6899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 043480 410 ALINGLCKSSRVSEAMHLYEEMQIRGAHPD-EVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDK-TVSAALIEAI 485 (493)
Q Consensus 410 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~ 485 (493)
.+...|-..|+.+.|.+.+.+.+. +.|. ...++.|...|...|+..+|..-++.+++ ++||. ..+-.++.++
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHH
Confidence 999999999999999999999988 4564 78899999999999999999999999996 57775 4444444443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-21 Score=184.10 Aligned_cols=431 Identities=12% Similarity=-0.026 Sum_probs=284.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHh
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (493)
.+......|.+.|++++|++.|+++++.. |+...|..+..+|...|++++|+..++..++.. +.+..++..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 35577888999999999999999998854 567788889999999999999999999998875 456678888999999
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 043480 91 EVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGL 170 (493)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 170 (493)
..|++++ |+..|......+.. +......++..+.. ..+........+.. +++...+..+.. +
T Consensus 206 ~lg~~~e-----------A~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~ 267 (615)
T TIGR00990 206 GLGKYAD-----------ALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-Y 267 (615)
T ss_pred HcCCHHH-----------HHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-H
Confidence 9999954 44444444332111 11111111111111 12222232332221 112222222222 1
Q ss_pred hccCchhHHHHHHHHHHhCCCCCC-hhhHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHccC
Q 043480 171 CGDGKVDLAYELTVGAMKGKVEFG-VLIYNALISGF---CRTGRIRRAMAIKSFMKWNG-C-EPDLVTYNAILNYYCDEV 244 (493)
Q Consensus 171 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~ll~~~~~~~ 244 (493)
....+......-+....+. .+. ...+..+...+ ...+++++|.+.|+.....+ . +.....+..+...+...|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 268 LQSFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred HHHccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 1111111111111111111 111 11111111111 23467888888888888754 2 234456777777888889
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 043480 245 MLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFE 324 (493)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 324 (493)
++++|...++...+.. +.....|..+...+...|++++|...|.+++...+. +...|..+...+...|++++|...|+
T Consensus 346 ~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 346 KHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred CHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999998887753 233557777888888889999999999888876543 66778888888888999999999999
Q ss_pred HHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC
Q 043480 325 GMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD 404 (493)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 404 (493)
+..+..+ .+...+..+..++.+.|++++|...|+...+.. +.+...++.+...+...|++++|...|++.++.....+
T Consensus 424 kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 424 KSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK 501 (615)
T ss_pred HHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc
Confidence 8887643 356667778888888999999999998888654 55677888888888889999999999998886521111
Q ss_pred Hh------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 405 VI------SYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 405 ~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.. .++.....+...|++++|.+++++....+.. +...+..+...+.+.|++++|.+.++++.+.
T Consensus 502 ~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 502 PMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 11 1122222333468899999999988775322 4567888889999999999999999888765
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-22 Score=177.57 Aligned_cols=419 Identities=14% Similarity=0.079 Sum_probs=315.8
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
|.+....-.+-..+....+++....--....+.. +.-..+|..+..++-..|++++|+.+|+.+++.. +.....|..+
T Consensus 79 ~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inl 156 (966)
T KOG4626|consen 79 PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINL 156 (966)
T ss_pred CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhH
Confidence 3344444444455666667776666555555554 5567778888888888888888888888888764 4456778888
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHhH
Q 043480 86 ISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVT-YTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD-NKAC 163 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 163 (493)
..++...|+. ..|.+.|.+.++ ..|+... ...+...+-..|++.+|...|-+.++. .|. ...|
T Consensus 157 a~al~~~~~~-----------~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiaw 221 (966)
T KOG4626|consen 157 AAALVTQGDL-----------ELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAW 221 (966)
T ss_pred HHHHHhcCCC-----------cccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeee
Confidence 8888888888 455566666666 3454443 233444555678888888888887765 343 4567
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 043480 164 AALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDE 243 (493)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 243 (493)
+.|.-.+-.+|+.-.|+.-|.+..+.+ +--...|-.|...|...+.+++|+..|.+..... +.....+..+...|..+
T Consensus 222 snLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeq 299 (966)
T KOG4626|consen 222 SNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQ 299 (966)
T ss_pred hhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEecc
Confidence 788888888888888888888888764 2335678888888888889999998888877653 44566777777888889
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 043480 244 VMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLF 323 (493)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 323 (493)
|.++-|+..+++..+.. +.-+..|+.+..++-..|++.+|...+.+.+.-.+. -..+.+.|...+...|.+++|..+|
T Consensus 300 G~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly 377 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLY 377 (966)
T ss_pred ccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHH
Confidence 99999999999888753 334678899999999999999999999888876544 4556778888999999999999999
Q ss_pred HHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC
Q 043480 324 EGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITP 403 (493)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 403 (493)
....+-.. --...++.|...|-.+|+.++|+..+++..+.. +.-...|+.+...|-..|+.+.|.+.+.+.+.. .|
T Consensus 378 ~~al~v~p-~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nP 453 (966)
T KOG4626|consen 378 LKALEVFP-EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NP 453 (966)
T ss_pred HHHHhhCh-hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--Cc
Confidence 98877522 134567888899999999999999999988753 334568899999999999999999999999875 45
Q ss_pred C-HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 043480 404 D-VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD-EVTFKLLIGGLV 451 (493)
Q Consensus 404 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 451 (493)
. ...++.|...|-.+|+..+|++-++...+ ++|| +..+..++.++-
T Consensus 454 t~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 454 TFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 4 46788999999999999999999999987 4665 555665655443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-22 Score=185.22 Aligned_cols=301 Identities=12% Similarity=0.039 Sum_probs=145.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcC---hhhHHHHHHHHhc
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLT---PFTYSRFISGLCE 91 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~ 91 (493)
....+...|++++|+..|+++.+.+ |.+..++..+...+...|++++|..+++.+...+..++ ...+..+...+..
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666654 44455566666666666666666666666655321111 1344555555666
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HhHHHHH
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN----KACAALV 167 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~ 167 (493)
.|++ +.|..+|+++.+. .+.+..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+.
T Consensus 120 ~g~~-----------~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 120 AGLL-----------DRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred CCCH-----------HHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 6666 4444555555443 2334555666666666666666666666666554322111 1223334
Q ss_pred HHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH
Q 043480 168 VGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLD 247 (493)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 247 (493)
..+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++...+......++..++..|...|+++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 44445555555555555554432 22233444444555555555555555555443321111233444444455555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHH---cCCHHHHHHHHH
Q 043480 248 EAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCK---GGQTRRAYKLFE 324 (493)
Q Consensus 248 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~ 324 (493)
+|...++.+.+.. |+...+..++..+.+.|++++|...+.++... .|+...++.++..+.. .|+.+++..+++
T Consensus 267 ~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 267 EGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 5555555444432 33333344444444444555554444444443 1333344434433332 224444444444
Q ss_pred HHHHcCCCc
Q 043480 325 GMRRRGIEL 333 (493)
Q Consensus 325 ~~~~~~~~~ 333 (493)
.+.+.++.|
T Consensus 343 ~~~~~~~~~ 351 (389)
T PRK11788 343 DLVGEQLKR 351 (389)
T ss_pred HHHHHHHhC
Confidence 444443333
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-22 Score=184.13 Aligned_cols=303 Identities=15% Similarity=0.122 Sum_probs=207.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhc
Q 043480 132 IDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFG---VLIYNALISGFCRT 208 (493)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 208 (493)
...+...|++++|++.|.++.+.+ +.+..++..+...+...|++++|..+++.+......++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 345667889999999999999864 23556788888888899999999999988877432111 24567788888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHccCCHHHH
Q 043480 209 GRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDV----YSYNQLLKGLCNSNQLDKA 284 (493)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 284 (493)
|++++|..+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 89999998888888653 556777888888888888888888888888765422211 1334555666677777777
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 043480 285 YMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM 364 (493)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 364 (493)
...+.++....+. +...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777665432 445566666777777777777777777766533222345666666777777777777777776654
Q ss_pred CCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHH
Q 043480 365 NLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCK---SSRVSEAMHLYEEMQIRGAHPDEV 441 (493)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~ 441 (493)
.|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 244445566666677777777777777766654 4666666666655553 346667777777776655555443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-19 Score=175.37 Aligned_cols=204 Identities=11% Similarity=0.014 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHH
Q 043480 279 NQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLL 358 (493)
Q Consensus 279 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 358 (493)
++.++|...+.+.....+ +......+...+...|++++|...|+++... +|+...+..+..++...|+.++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~~P--d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQP--DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHhCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 445555555555554432 2222222333345677777777777776544 334444555566667777777777777
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 043480 359 NQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP 438 (493)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 438 (493)
+...+.. +.+...+..+.......|++++|...+++.++. .|+...+..+..++.+.|++++|+..+++.....+.
T Consensus 566 ~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd- 641 (987)
T PRK09782 566 QQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN- 641 (987)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 7776654 333333333333444557777777777777764 456667777777777778888888888777764322
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhchhc
Q 043480 439 DEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDAA 491 (493)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 491 (493)
+...+..+..++...|++++|...++++++. .+-+...+..+-.++...|+.
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCH
Confidence 5667777777777777888887777777764 233456666666666666654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-20 Score=175.66 Aligned_cols=334 Identities=11% Similarity=0.016 Sum_probs=268.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
....+..+.++|++++|+.+++.+.... +.+...+..++.+....|++++|...++++.+.. +.++..+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 3456778899999999999999999876 5566677777788888999999999999998875 5566778888899999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLC 171 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (493)
.|++ +.|+..+++.... .+.+...+..+...+...|++++|...++.+...... +...+..+ ..+.
T Consensus 123 ~g~~-----------~~Ai~~l~~Al~l-~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~ 188 (656)
T PRK15174 123 SKQY-----------ATVADLAEQAWLA-FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFL 188 (656)
T ss_pred cCCH-----------HHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHH
Confidence 9999 6677778887775 3446778888999999999999999999988765322 33333333 3478
Q ss_pred ccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH---
Q 043480 172 GDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDE--- 248 (493)
Q Consensus 172 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--- 248 (493)
..|++++|...++.+......++...+..+...+...|++++|...++++.... +.+...+..+...+...|++++
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~ 267 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKL 267 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHH
Confidence 899999999999998876433444455566778889999999999999998775 5567788888999999999986
Q ss_pred -HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043480 249 -AEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMR 327 (493)
Q Consensus 249 -a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 327 (493)
|...++...+.. +.+...+..+...+...|++++|...+++.....+. +...+..+..++...|++++|...|+.+.
T Consensus 268 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 268 QAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 799999988754 446778888999999999999999999999987654 66677888899999999999999999998
Q ss_pred HcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 043480 328 RRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN 365 (493)
Q Consensus 328 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 365 (493)
..+.. +...+..+..++...|+.++|...|+...+..
T Consensus 346 ~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 346 REKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 76332 22334445677889999999999999988653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-19 Score=174.98 Aligned_cols=426 Identities=11% Similarity=-0.011 Sum_probs=229.4
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
+-++....-.+......|+.++|++++.+..... +.+...+..+...+...|++++|..+|++.++.. +.++..+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4455555556666777777777777777766533 4444556667777777777777777777766653 3345555666
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 043480 86 ISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAA 165 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (493)
..++...|++ +.|+..++++... .+.+.. +..+..++...|++++|+..++++.+.. +.+...+..
T Consensus 90 a~~l~~~g~~-----------~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~ 155 (765)
T PRK10049 90 ILTLADAGQY-----------DEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTE 155 (765)
T ss_pred HHHHHHCCCH-----------HHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 6666677777 5566667766664 333444 6666667777777777777777777652 123444455
Q ss_pred HHHHHhccCchhHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043480 166 LVVGLCGDGKVDLAYELTVGAMKGKVEFGV------LIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNY 239 (493)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 239 (493)
+..++...+..+.|.+.++.+.. .|+. ......+......+.
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~----------------------------- 203 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR----------------------------- 203 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc-----------------------------
Confidence 55566666666666666655443 1110 001111111110000
Q ss_pred HHccCCh---HHHHHHHHHHHHC-CCCCChh-hHH----HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 043480 240 YCDEVML---DEAEKLVMEMESC-GIEPDVY-SYN----QLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAF 310 (493)
Q Consensus 240 ~~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (493)
...+++ ++|+..++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+...+..........+...|
T Consensus 204 -~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~y 282 (765)
T PRK10049 204 -SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAY 282 (765)
T ss_pred -ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 011112 3444444444432 1111111 000 00122334455555555555555443210111111234455
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCc---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------CCC---HHhH
Q 043480 311 CKGGQTRRAYKLFEGMRRRGIEL---DVVTFTILIKAFLREGSSAMAEKLLNQMRGMNL-----------SPD---RILY 373 (493)
Q Consensus 311 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~ 373 (493)
...|++++|+..|+.+.+..... .......+..++...|++++|...++.+.+... .|+ ...+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 55566666666655554432110 112333444455555666666666655554320 122 1234
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh
Q 043480 374 TTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQ 452 (493)
Q Consensus 374 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 452 (493)
..+...+...|++++|.++++++... .+.+...+..+...+...|++++|++.+++.... .| +...+...+..+..
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHH
Confidence 45556666777777777777777665 2445666677777777777777777777777664 34 45666666667777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 453 EKKLELACRLWDQMMEKGFTLDKTVSAALIEAI 485 (493)
Q Consensus 453 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 485 (493)
.|++++|..+++++++. .|+......+-+.+
T Consensus 440 ~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred hCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 77777777777777764 55555544444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-19 Score=175.22 Aligned_cols=378 Identities=9% Similarity=-0.054 Sum_probs=229.8
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
.|.+...+..++.++.+.|++++|.++|+++++.. |.+...+..++.++...|++++|+..++++.+.. +.+.. +..
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~ 121 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLA 121 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHH
Confidence 45666779999999999999999999999999876 6777888889999999999999999999998874 45566 888
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH---
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNK--- 161 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 161 (493)
+..++...|+. +.|+..++++... .+.+...+..+...+...|..+.|++.++.... .|+..
T Consensus 122 la~~l~~~g~~-----------~~Al~~l~~al~~-~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l 186 (765)
T PRK10049 122 LAYVYKRAGRH-----------WDELRAMTQALPR-APQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDL 186 (765)
T ss_pred HHHHHHHCCCH-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHH
Confidence 88899999999 7788999999886 344666777788888899999999999987664 23310
Q ss_pred ---hHHHHHHHHhc-----cCch---hHHHHHHHHHHhC-CCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043480 162 ---ACAALVVGLCG-----DGKV---DLAYELTVGAMKG-KVEFGVL-IYNALISGFCRTGRIRRAMAIKSFMKWNGCEP 228 (493)
Q Consensus 162 ---~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 228 (493)
....++..... .+++ +.|++.++.+.+. ...|+.. .+..
T Consensus 187 ~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~---------------------------- 238 (765)
T PRK10049 187 EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR---------------------------- 238 (765)
T ss_pred HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH----------------------------
Confidence 11111222111 1112 3344444444432 0011110 0000
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---ChhhHH
Q 043480 229 DLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIE-PDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR---DKVSYN 304 (493)
Q Consensus 229 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ 304 (493)
.....+..+...|++++|+..|+.+.+.+.+ |+ .....+...|...|++++|+..|+++....+.. ......
T Consensus 239 ---a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~ 314 (765)
T PRK10049 239 ---ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA 314 (765)
T ss_pred ---HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence 0000011223334455555555554443211 11 111112334444555555555555444322111 011233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CcC---HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 043480 305 TVIEAFCKGGQTRRAYKLFEGMRRRGI-----------ELD---VVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDR 370 (493)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 370 (493)
.+..++...|++++|..+++.+....+ .|+ ...+..+...+...|+.++|+..++.+.... |.+.
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~ 393 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQ 393 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 333344455555555555555544311 122 1234455666677777788877777777654 5566
Q ss_pred HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
..+..+...+...|++++|++.++++++.. +.+...+..++..+...|++++|..+++++++.
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777777777777778888888887777652 223455556666777777888888888777764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-19 Score=172.35 Aligned_cols=362 Identities=12% Similarity=-0.008 Sum_probs=230.9
Q ss_pred HHHHcCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCCh
Q 043480 18 NLVKAGLIDQAVHVFDEMTQSN--CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNF 95 (493)
Q Consensus 18 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 95 (493)
.+.++.+++..--.|....+.. -..+......++..+.+.|++++|..+++..+... +.++..+..++.+....|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCH
Confidence 3456666776666666554431 11222334445566777788888888877777664 33344555555666667777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCc
Q 043480 96 TLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGK 175 (493)
Q Consensus 96 ~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (493)
+.|+..++++... .+.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|+
T Consensus 93 -----------~~A~~~l~~~l~~-~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~ 159 (656)
T PRK15174 93 -----------DAVLQVVNKLLAV-NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDK 159 (656)
T ss_pred -----------HHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 6677777777775 34456667777777777888888888887777652 2245666677777777777
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 043480 176 VDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVME 255 (493)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 255 (493)
+++|...+..+..... .+...+..+ ..+...|++++|...++.+......++...+..+...+...|++++|...++.
T Consensus 160 ~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~ 237 (656)
T PRK15174 160 ELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGES 237 (656)
T ss_pred hHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777776655432 223333333 23666777777777777776553223344444455666777777777777777
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCHHH----HHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 043480 256 MESCGIEPDVYSYNQLLKGLCNSNQLDK----AYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGI 331 (493)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 331 (493)
+.+.. +.+...+..+...+...|++++ |...|++.....+. +...+..+...+...|++++|...+++.....+
T Consensus 238 al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P 315 (656)
T PRK15174 238 ALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP 315 (656)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 77653 3455666667777777777764 67777777766543 566677777777777777777777777776532
Q ss_pred CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 043480 332 ELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQ 399 (493)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 399 (493)
.+...+..+..++...|++++|...++.+.+.+ +.+...+..+..++...|+.++|...|++..+.
T Consensus 316 -~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 316 -DLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 244556666677777777777777777776543 222233334455667777777777777777654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-18 Score=168.46 Aligned_cols=442 Identities=12% Similarity=0.068 Sum_probs=298.9
Q ss_pred chhh-HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 8 QRLI-YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIR-HSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 8 ~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
++.+ ...+.+.|.+.|+++.|++++.++.+.+ +.+......+..+|.. .++ +++..+++. .+..++..+..+
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~al 253 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITY 253 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHH
Confidence 3444 4444899999999999999999999986 5666667777778887 366 777777553 224677888899
Q ss_pred HHHHhccCChhhHHHHHHHHH---------------------------------------HHHHHHHHHHHh--------
Q 043480 86 ISGLCEVKNFTLINILLDNMD---------------------------------------KLALEVFHKMVS-------- 118 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~---------------------------------------~~a~~~~~~~~~-------- 118 (493)
...+...|+.+.|...+.++. .-.++..+....
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ 333 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999998888765 001111111111
Q ss_pred --CCCCCCHhhHHHHHHHH--hccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCC--CC
Q 043480 119 --KGREPDVVTYTIVIDGL--CKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGK--VE 192 (493)
Q Consensus 119 --~g~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~ 192 (493)
.+..|..... .++.. ...+...++.+.+..|.... +-+......+.-.....|+.++|.++++...... ..
T Consensus 334 ~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (987)
T PRK09782 334 KLLATLPANEML--EERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR 410 (987)
T ss_pred HHhcCCCcchHH--HHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc
Confidence 1133333321 22222 23366667777777776652 2356666666667778888888888888877621 12
Q ss_pred CChhhHHHHHHHHHhcCC-------------------------HHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHc
Q 043480 193 FGVLIYNALISGFCRTGR-------------------------IRR---AMAIKSFMKWNGCEP--DLVTYNAILNYYCD 242 (493)
Q Consensus 193 ~~~~~~~~l~~~~~~~~~-------------------------~~~---a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~ 242 (493)
.+......++..|.+.+. ..+ +...+....... ++ +...|..+..++..
T Consensus 411 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 411 LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD 489 (987)
T ss_pred cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh
Confidence 233344455555554432 223 233333333321 44 56677777766665
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 043480 243 EVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKL 322 (493)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 322 (493)
++.++|...+....... |+......+...+...|++++|...|+++.... ++...+..+...+.+.|++++|...
T Consensus 490 -~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 490 -TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred -CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHH
Confidence 78888888777766543 554443344455568889999988888875542 2334455667778888899999999
Q ss_pred HHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCC
Q 043480 323 FEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGIT 402 (493)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 402 (493)
++...+.+. .+...+..+.......|++++|...++...+.. |+...+..+..++.+.|++++|...+++.++.. +
T Consensus 565 l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-P 640 (987)
T PRK09782 565 LQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-P 640 (987)
T ss_pred HHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 988887642 233333333344445689999999988888764 567788888888888999999999999888763 4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 403 PDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 403 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.+...++.+..++...|++++|+..+++..+..+. +...+..+..++...|++++|...++++.+.
T Consensus 641 d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 641 NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 45667778888888889999999999888875322 6788888888999999999999999888865
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-19 Score=171.13 Aligned_cols=403 Identities=12% Similarity=-0.007 Sum_probs=279.8
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
.|++..|..+..+|.+.|++++|++.++.+++.+ |.+...|..+..++...|++++|+.-|......+ ..+......+
T Consensus 157 ~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~ 234 (615)
T TIGR00990 157 KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIID-GFRNEQSAQA 234 (615)
T ss_pred CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCccHHHHHH
Confidence 3578889999999999999999999999999986 6678889999999999999999999887765543 1221111111
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHhHH
Q 043480 86 ISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD-NKACA 164 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 164 (493)
+..+.. ..+.......... .+++...+..+...+ ..........-+....+. .+. ...+.
T Consensus 235 ~~~~l~---------------~~a~~~~~~~l~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 295 (615)
T TIGR00990 235 VERLLK---------------KFAESKAKEILET-KPENLPSVTFVGNYL-QSFRPKPRPAGLEDSNEL--DEETGNGQL 295 (615)
T ss_pred HHHHHH---------------HHHHHHHHHHHhc-CCCCCCCHHHHHHHH-HHccCCcchhhhhccccc--ccccccchH
Confidence 111111 1122222222222 223333333333222 211122222222211111 111 11111
Q ss_pred HHHHH---HhccCchhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043480 165 ALVVG---LCGDGKVDLAYELTVGAMKGK--VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNY 239 (493)
Q Consensus 165 ~l~~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 239 (493)
.+... ....+++++|.+.|+...+.+ .+.....++.+...+...|++++|+..+++..... +.....|..+...
T Consensus 296 ~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~ 374 (615)
T TIGR00990 296 QLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASM 374 (615)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 11111 123478889999999988754 23345677888888889999999999999988763 3446678888888
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHH
Q 043480 240 YCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRA 319 (493)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 319 (493)
+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|.+.+...+. +...+..+...+.+.|++++|
T Consensus 375 ~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHH
Confidence 889999999999999988754 456778888889999999999999999999887654 666777888889999999999
Q ss_pred HHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------HhHHHHHHHHHccCCHhHHHHHH
Q 043480 320 YKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDR------ILYTTIIDCLCKSREIGTAYGVF 393 (493)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~ 393 (493)
+..|+...+.. +.+...+..+...+...|++++|...|+...+.....+. ..++.....+...|++++|..++
T Consensus 453 ~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 453 MATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999988763 336778888899999999999999999998865321111 12222333344568999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 394 LDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 394 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
++.++.. +.+...+..+...+...|++++|+..|++..+.
T Consensus 532 ~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 532 EKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9988763 334557888999999999999999999998764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-18 Score=162.57 Aligned_cols=451 Identities=10% Similarity=-0.008 Sum_probs=329.6
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF-SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
|..+.+....+....++|+++.|+..|+++.+.+ |.+ +..+ .++..+...|+.++|+..+++..... +........
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~lla 107 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLAS 107 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHH
Confidence 3444555556667889999999999999999876 333 2344 88888889999999999999998321 222333333
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACA 164 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 164 (493)
+...+...|++ ++|+++++++.+. .+.+...+..++..+...++.++|++.++++... .|+...+.
T Consensus 108 lA~ly~~~gdy-----------d~Aiely~kaL~~-dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l 173 (822)
T PRK14574 108 AARAYRNEKRW-----------DQALALWQSSLKK-DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYM 173 (822)
T ss_pred HHHHHHHcCCH-----------HHHHHHHHHHHhh-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHH
Confidence 45678888999 7788999999886 3445777778889999999999999999999876 46666665
Q ss_pred HHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH------HHHHH
Q 043480 165 ALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTY------NAILN 238 (493)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~ll~ 238 (493)
.++..+...++..+|++.++++.+.. +.+...+..+..+..+.|-...|+++..+-... +.+....+ ...++
T Consensus 174 ~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr 251 (822)
T PRK14574 174 TLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVR 251 (822)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHh
Confidence 55555555667766999999999985 557888889999999999999999877653321 11111111 11111
Q ss_pred HH-----HccCChHH---HHHHHHHHHHC-C-CCCChhhH----HHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHH
Q 043480 239 YY-----CDEVMLDE---AEKLVMEMESC-G-IEPDVYSY----NQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYN 304 (493)
Q Consensus 239 ~~-----~~~~~~~~---a~~~~~~~~~~-~-~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 304 (493)
.- ....++.. |..-++.+... + .++....| .-.+-++...+++.+++..++.+...+......+-.
T Consensus 252 ~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 252 MAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred hcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 10 01223333 44444444431 1 22222222 223456778899999999999999877655667888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-----CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------CC
Q 043480 305 TVIEAFCKGGQTRRAYKLFEGMRRRGI-----ELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNL-----------SP 368 (493)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~ 368 (493)
.+..+|...+++++|..+|+.+..... .++......|..++...+++++|..+++.+.+... .|
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 899999999999999999999976531 22344457889999999999999999999987321 12
Q ss_pred CH---HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHH
Q 043480 369 DR---ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFK 444 (493)
Q Consensus 369 ~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~ 444 (493)
++ ..+..++..+...|++.+|++.++.+.... +-|......+...+...|.+.+|++.++..... .| +..+..
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~ 488 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILER 488 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHH
Confidence 21 234556777888999999999999998763 568889999999999999999999999887764 45 678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043480 445 LLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAA 480 (493)
Q Consensus 445 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 480 (493)
..+.++...|++++|..+.+.+.+. .|+......
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~ 522 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISR--SPEDIPSQE 522 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHH
Confidence 8999999999999999999999865 555544443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-19 Score=161.83 Aligned_cols=448 Identities=12% Similarity=0.053 Sum_probs=339.7
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcC--
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNC--RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLT-- 78 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 78 (493)
...+.||.+.+.|...|.-.|++..+.++...+..... ..-..+|..+.+++-.+|++++|...|.+..+.. ++
T Consensus 264 ~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~ 341 (1018)
T KOG2002|consen 264 KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNF 341 (1018)
T ss_pred hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCc
Confidence 34678999999999999999999999999988876431 1113347888999999999999999999988764 33
Q ss_pred hhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC----CHHHHHHHHHHHHHC
Q 043480 79 PFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAK----EFDKAVQAWEHMIEN 154 (493)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~ 154 (493)
...+--+.+.+...|+. +.+...|+.+... .+.+..+.-.|...|...+ ..+.|..++.+..+.
T Consensus 342 ~l~~~GlgQm~i~~~dl-----------e~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDL-----------EESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred cccccchhHHHHHhchH-----------HHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 34455678899999999 5666777777764 4445667777777777664 567777887777765
Q ss_pred CCCCCHHhHHHHHHHHhccCchhHHHHHHHHHH----hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC
Q 043480 155 GIKPDNKACAALVVGLCGDGKVDLAYELTVGAM----KGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWN---GCE 227 (493)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 227 (493)
- +.|...|..+...+....-+.. +..+..+. ..+.++.+...|.+...+...|+++.|...|...... ...
T Consensus 410 ~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 410 T-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred c-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 3 4477888888888776655544 66665544 3444577889999999999999999999999988765 112
Q ss_pred CCH------HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh
Q 043480 228 PDL------VTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKV 301 (493)
Q Consensus 228 ~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 301 (493)
++. .+--.+....-..++.+.|.++|..+.+.. +.-...|..++.+....+...+|...+......... ++.
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~ 565 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPN 565 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcH
Confidence 222 223334555666789999999999998753 223344555554444567888999999888876543 777
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcCHhHHHHHHHHHHH------------cCCHHHHHHHHHHHHhCCCCC
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRRG-IELDVVTFTILIKAFLR------------EGSSAMAEKLLNQMRGMNLSP 368 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~ 368 (493)
.+..+...+.....+..|.+-|..+.+.- ..+|..+.-.|.+.|.. .+..++|+.+|..+.+.. |.
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pk 644 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PK 644 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cc
Confidence 78888888888888888888777776542 23566666666665542 345788999999998876 67
Q ss_pred CHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHH
Q 043480 369 DRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR-GAHPDEVTFKLLI 447 (493)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~ 447 (493)
|...-|.+.-.++..|+++.|..+|.+..+... -...+|-.+.++|...|++..|+++|+...+. .-.-+..+...|.
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 888888899999999999999999999998742 35678899999999999999999999988654 3334789999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 043480 448 GGLVQEKKLELACRLWDQMMEKG 470 (493)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~~ 470 (493)
+++.+.|++.+|.+.+..+....
T Consensus 724 ra~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 724 RAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhC
Confidence 99999999999999999988763
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-18 Score=157.54 Aligned_cols=412 Identities=11% Similarity=0.062 Sum_probs=252.7
Q ss_pred hHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHhcc
Q 043480 61 DLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGR--EPDVVTYTIVIDGLCKA 138 (493)
Q Consensus 61 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~ 138 (493)
..+..++...-..+ +.||.+.+.|...+...|+++.++ .+...+..... ..-..+|-.+.++|-..
T Consensus 253 ~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~-----------~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVW-----------HLAEHAIKNTENKSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHH-----------HHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 33444444433332 345555566666666666665444 33333332211 11234566788888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----CHH
Q 043480 139 KEFDKAVQAWEHMIENGIKPDN--KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTG----RIR 212 (493)
Q Consensus 139 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~ 212 (493)
|++++|...|-...+. .|+. ..+.-+...+...|+++.+...|+.+.+.. +.+..+...|...|...+ ..+
T Consensus 321 Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d 397 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRD 397 (1018)
T ss_pred ccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHH
Confidence 8888888888776654 3333 445567788888888888888888887764 445555566666666553 345
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH----HHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 043480 213 RAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEM----ESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFM 288 (493)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 288 (493)
.|..++.+....- +.|...|-.+...+-.. +...+...|..+ ...+.++.+...|.+...+...|+++.|...|
T Consensus 398 ~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 398 KASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF 475 (1018)
T ss_pred HHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence 5666665555443 44555565555544333 333334444432 33444456666677777777777777777766
Q ss_pred HHHHHc---CCCCChh-------hHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------------
Q 043480 289 VKKMEA---KGLRDKV-------SYNTVIEAFCKGGQTRRAYKLFEGMRRRG---------------------------- 330 (493)
Q Consensus 289 ~~~~~~---~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------- 330 (493)
...... ...++.. -|| +...+-..++.+.|.+.|..+.+..
T Consensus 476 ~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk 554 (1018)
T KOG2002|consen 476 KSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLK 554 (1018)
T ss_pred HHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHH
Confidence 666544 1111221 122 2222333344444444444444331
Q ss_pred -----CCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHc------------cCCHhHHHHH
Q 043480 331 -----IELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM-NLSPDRILYTTIIDCLCK------------SREIGTAYGV 392 (493)
Q Consensus 331 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~ 392 (493)
...++..++.+...+.....+..|..-|..+.+. ...+|..+...|.+.|.. .+..+.|+++
T Consensus 555 ~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~ 634 (1018)
T KOG2002|consen 555 DALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQL 634 (1018)
T ss_pred HHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 1223444444555555555555555555544432 113555555566665532 2346789999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC
Q 043480 393 FLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK-GF 471 (493)
Q Consensus 393 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~ 471 (493)
|.++++.. +-|...-|.+.-+++..|++.+|..+|.+..+... -+..+|-.+..+|..+|++..|.++|+...+. ..
T Consensus 635 y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~ 712 (1018)
T KOG2002|consen 635 YGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK 712 (1018)
T ss_pred HHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99998863 55778888899999999999999999999988643 26778999999999999999999999999887 44
Q ss_pred CCCHHHHHHHHHHHhhchhcc
Q 043480 472 TLDKTVSAALIEAIHLQDAAN 492 (493)
Q Consensus 472 ~~~~~~~~~ll~~~~~~~~~~ 492 (493)
+-++.+...|-+++...|.+.
T Consensus 713 ~~~~~vl~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 713 KNRSEVLHYLARAWYEAGKLQ 733 (1018)
T ss_pred cCCHHHHHHHHHHHHHhhhHH
Confidence 556788888999988887654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-16 Score=132.69 Aligned_cols=451 Identities=14% Similarity=0.098 Sum_probs=345.3
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
.+...|...++.=..++++..|+.+|++++..+ ..+...|...+.+-.++.+...|..++++....-+..| ..|...+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHH
Confidence 445566666777777889999999999999887 67788899999999999999999999999987632223 3455555
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAAL 166 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (493)
..--..|+. ..|.++|++... ..|+..+|++.+..-.+.+..+.|..+|++.+-- .|+..+|...
T Consensus 149 ymEE~LgNi-----------~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wiky 213 (677)
T KOG1915|consen 149 YMEEMLGNI-----------AGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKY 213 (677)
T ss_pred HHHHHhccc-----------HHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHH
Confidence 555667887 678899999987 7899999999999999999999999999999864 6999999999
Q ss_pred HHHHhccCchhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHc
Q 043480 167 VVGLCGDGKVDLAYELTVGAMKGK--VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPD--LVTYNAILNYYCD 242 (493)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~ 242 (493)
.+.-.+.|....+..+|....+.- -..+...+.+....-.++..++.|.-+|.-....= +.+ ...|......--+
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKq 292 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQ 292 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHH
Confidence 999999999999999999887631 12234456666666667888999999999888762 323 3345555544445
Q ss_pred cCChHHHHHHH--------HHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHH-----
Q 043480 243 EVMLDEAEKLV--------MEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDK-VSYNTVIE----- 308 (493)
Q Consensus 243 ~~~~~~a~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~----- 308 (493)
-|+.....+.. +.+.+.+ +.|-.+|--.++.-...|+.+...++|++++...++.+. ..|...|-
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinY 371 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINY 371 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH
Confidence 56655544432 3333332 456777888888888899999999999999986544221 12222221
Q ss_pred ---HHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHH----HHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 043480 309 ---AFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAF----LREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLC 381 (493)
Q Consensus 309 ---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (493)
.-....+++.+.++|+...+. ++....||.-+--.| .++.+...|.+++.... |.-|...+|...|..-.
T Consensus 372 alyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelEl 448 (677)
T KOG1915|consen 372 ALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELEL 448 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHH
Confidence 113468899999999999885 566677776654444 46789999999999887 45789999999999999
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 043480 382 KSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGA-HPDEVTFKLLIGGLVQEKKLELAC 460 (493)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~ 460 (493)
+.++++.+..+|++.++.+ +-|..+|......-...|+.+.|..+|+-+++... ......|...|+--...|.++.|.
T Consensus 449 qL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR 527 (677)
T ss_pred HHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH
Confidence 9999999999999999975 44677888888877889999999999999987521 224667788888888999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH
Q 043480 461 RLWDQMMEKGFTLDKTVSAALI 482 (493)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~ll 482 (493)
.+++++++. .+...+|.++.
T Consensus 528 ~LYerlL~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 528 ALYERLLDR--TQHVKVWISFA 547 (677)
T ss_pred HHHHHHHHh--cccchHHHhHH
Confidence 999999986 34445666554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-16 Score=149.92 Aligned_cols=425 Identities=13% Similarity=0.067 Sum_probs=303.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcCh--hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCC
Q 043480 44 SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTP--FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGR 121 (493)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~ 121 (493)
+.+...-+-...+.|+++.|+..|++.++.. |+. ..+ .++..+...|+. ++|+..+++.... .
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~-----------~~A~~~~eka~~p-~ 98 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRD-----------QEVIDVYERYQSS-M 98 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCc-----------HHHHHHHHHhccC-C
Confidence 3333444456679999999999999998874 442 344 888888888999 6677778877521 1
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHH
Q 043480 122 EPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNAL 201 (493)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (493)
+........+...+...|++++|+++|+++.+... .+...+..++..+...++.++|++.+..+... .|+...+..+
T Consensus 99 n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~l 175 (822)
T PRK14574 99 NISSRGLASAARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTL 175 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHH
Confidence 22233344446688889999999999999998742 34677778888899999999999999999876 4455555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhh------HHHHHHHH
Q 043480 202 ISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYS------YNQLLKGL 275 (493)
Q Consensus 202 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~ 275 (493)
+..+...++..+|++.++++.... +.+...+..+..+..+.|-...|.++..+-...- .+.... ...+++.-
T Consensus 176 ayL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a 253 (822)
T PRK14574 176 SYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMA 253 (822)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhc
Confidence 555555667767999999999885 5567788888899999999988887776533211 111100 11111110
Q ss_pred ---H--ccC---CHHHHHHHHHHHHHcCCC-CCh-hh----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHH
Q 043480 276 ---C--NSN---QLDKAYMFMVKKMEAKGL-RDK-VS----YNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTIL 341 (493)
Q Consensus 276 ---~--~~~---~~~~a~~~~~~~~~~~~~-~~~-~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 341 (493)
. ... -.+.|+.-++.+...-.. |.. .. ..-.+-++...|++.++++.|+.+...+.+....+-..+
T Consensus 254 ~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 254 VLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 0 111 234566666666653221 221 11 122345677889999999999999988876566788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCC-----------CCCH
Q 043480 342 IKAFLREGSSAMAEKLLNQMRGMN-----LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGI-----------TPDV 405 (493)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~~ 405 (493)
..+|...+.+++|..++..+.... .+++......|..+|...+++++|..+++.+.+... .||.
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 999999999999999999987642 123444467899999999999999999999987411 1222
Q ss_pred ---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 043480 406 ---ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLD-KTVSAAL 481 (493)
Q Consensus 406 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l 481 (493)
..+..++..+...|+..+|++.++++....+. |......+.+.+...|.+.+|.+.++.+... .|+ ..+....
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~ 490 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQ 490 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHH
Confidence 23345677788999999999999999875322 8999999999999999999999999877754 555 4555555
Q ss_pred HHHHhhchhc
Q 043480 482 IEAIHLQDAA 491 (493)
Q Consensus 482 l~~~~~~~~~ 491 (493)
..++...+++
T Consensus 491 ~~~al~l~e~ 500 (822)
T PRK14574 491 AETAMALQEW 500 (822)
T ss_pred HHHHHhhhhH
Confidence 5555555544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-17 Score=137.41 Aligned_cols=369 Identities=17% Similarity=0.164 Sum_probs=254.0
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhH
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTY 82 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (493)
+..|-.+.+|..+|...++-...+.|.+++++......+.+..+||.+|.+-.- ....++..+|......||..|+
T Consensus 201 E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 201 ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhH
Confidence 456788899999999999999999999999999887778899999999876533 3338899999999999999999
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHH-HHHHHHHHHH----CCCC
Q 043480 83 SRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDK-AVQAWEHMIE----NGIK 157 (493)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~ 157 (493)
|.++++.++.|+++.|+ ..|++++.+|.+.|+.|...+|..+|..+.+.+++.+ +..+...+.. ..++
T Consensus 277 NalL~c~akfg~F~~ar-------~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDAR-------KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred HHHHHHHHHhcchHHHH-------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 99999999999999888 8899999999999999999999999999999888755 3333344332 2222
Q ss_pred ---C-CHHhHHHHHHHHhccCchhHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043480 158 ---P-DNKACAALVVGLCGDGKVDLAYELTVGAMKGK----VEFG---VLIYNALISGFCRTGRIRRAMAIKSFMKWNGC 226 (493)
Q Consensus 158 ---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 226 (493)
| |...|...+..|.+..+.+-|.++..-+.... +.++ ..-|..+....++....+.-..+|+.|.-.-.
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 2 34566777788888888888888766554321 2222 23455677777788888888889998887777
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 043480 227 EPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTV 306 (493)
Q Consensus 227 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 306 (493)
-|+..+...++++....+.++-..+++..+...|.........-++..+ ....+.|+...-..+
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L----------------~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLL----------------ARDKLHPLTPEREQL 493 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHH----------------hcCCCCCCChHHHHH
Confidence 7888888888888888888888888888888766433333222222222 222222221111111
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHhHH---HHHHHH
Q 043480 307 IEAFCKG--GQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM-NLSPDRILYT---TIIDCL 380 (493)
Q Consensus 307 ~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~---~l~~~~ 380 (493)
-....+. .-.+.....-.++.+.. ......+.++-.+.+.|..++|.++|..+.+. +--|-....+ -+++.-
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a 571 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSA 571 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHH
Confidence 1111110 11111222223344433 34455666666778888888888888887542 2223333334 455555
Q ss_pred HccCCHhHHHHHHHHHHhCC
Q 043480 381 CKSREIGTAYGVFLDMVEQG 400 (493)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~ 400 (493)
...++...|..+++-+...+
T Consensus 572 ~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 572 KVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HhcCCHHHHHHHHHHHHHcC
Confidence 66677777777777776653
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-15 Score=126.74 Aligned_cols=442 Identities=14% Similarity=0.151 Sum_probs=302.6
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH--HHhcCChhHH-HHHHHHhccCCCCcChhhHHHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGV--LIRHSRFDLV-QFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l 85 (493)
.++=+.|++ .+.+|.+.++--+|+.|.+.|.+.+...-..+.+. |-.+.+..-| .+.|-.|...| ..+..+|.
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sWK-- 191 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSWK-- 191 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-cccccccc--
Confidence 344455555 45567777888888888877777666666555543 2333333322 34455555544 23333332
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 043480 86 ISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAA 165 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (493)
.|+. |. ++-+. .+....++..+|.+.++--..+.|.++|++-.....+.+..+++.
T Consensus 192 ------~G~v-------------Ad-L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~ 247 (625)
T KOG4422|consen 192 ------SGAV-------------AD-LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNG 247 (625)
T ss_pred ------cccH-------------HH-HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhh
Confidence 2322 22 33333 455778999999999999999999999999988777889999999
Q ss_pred HHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043480 166 LVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRA----MAIKSFMKWNGCEPDLVTYNAILNYYC 241 (493)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~ll~~~~ 241 (493)
+|.+-.-... .++..+|......||..++|+++++..+.|+++.| .+++.+|++.|+.|...+|..+|..+.
T Consensus 248 lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~ 323 (625)
T KOG4422|consen 248 LIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFK 323 (625)
T ss_pred hhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhc
Confidence 9877543322 67888899888999999999999999999987654 678889999999999999999999998
Q ss_pred ccCChHH-HHHHHHHHHH----CCC----CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC----CC---hhhHHH
Q 043480 242 DEVMLDE-AEKLVMEMES----CGI----EPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGL----RD---KVSYNT 305 (493)
Q Consensus 242 ~~~~~~~-a~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~---~~~~~~ 305 (493)
+.++..+ +..++.++.. ..+ +.+...|...+..|.+..+.+.|..+..-....... ++ ..-|..
T Consensus 324 re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~ 403 (625)
T KOG4422|consen 324 RESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRK 403 (625)
T ss_pred ccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHH
Confidence 8887754 4444444432 122 234456677788888888888887765444332111 11 123556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC-
Q 043480 306 VIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSR- 384 (493)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 384 (493)
+....++....+.-...|+.|.-.-.-|+..+...++++....+.++-.-++|.+++..|...+...-..++..+++..
T Consensus 404 ~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~ 483 (625)
T KOG4422|consen 404 FFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL 483 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC
Confidence 6677788888999999999998877788999999999999999999999999998888775555554445555554433
Q ss_pred CH--------hH-----HHHH-------HHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCH
Q 043480 385 EI--------GT-----AYGV-------FLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGA----HPDE 440 (493)
Q Consensus 385 ~~--------~~-----a~~~-------~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~p~~ 440 (493)
.. .. |..+ -.++.+. .......+..+..+.+.|..++|.+++.-+.+.+- .|..
T Consensus 484 hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~l 561 (625)
T KOG4422|consen 484 HPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLL 561 (625)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcch
Confidence 11 00 1111 1222233 33445667777788999999999999999865432 2344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043480 441 VTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEA 484 (493)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 484 (493)
....-+++...+..+...|..+++-|...+++.-...-.-+...
T Consensus 562 nAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~ 605 (625)
T KOG4422|consen 562 NAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMED 605 (625)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHh
Confidence 44556778888889999999999999876554333333333333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-15 Score=131.00 Aligned_cols=431 Identities=9% Similarity=0.032 Sum_probs=260.9
Q ss_pred cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHH
Q 043480 22 AGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINIL 101 (493)
Q Consensus 22 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 101 (493)
.-+.+.|+.++.++.+. .|.+...|. +|.+..-|+.|..+++..++. ++-++..|..-...--..|+.+....+
T Consensus 389 lE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 389 LEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred ccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 34444555555555554 233333332 333444555555555555442 344445555544444455555444444
Q ss_pred HHHHH----------------------------HHHHHHHHHHHhCCCCC--CHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 043480 102 LDNMD----------------------------KLALEVFHKMVSKGREP--DVVTYTIVIDGLCKAKEFDKAVQAWEHM 151 (493)
Q Consensus 102 ~~~~~----------------------------~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 151 (493)
+++-. -.+..+....+..|+.- -..+|+.-...|.+.+-++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 44332 23344444444444432 2457777777777888888888888777
Q ss_pred HHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 043480 152 IENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLV 231 (493)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 231 (493)
++- ++-+...|......--..|..++...+|++....- +.....|......+-..|+...|..++....+.. +.+..
T Consensus 543 lqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnsee 619 (913)
T KOG0495|consen 543 LQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEE 619 (913)
T ss_pred Hhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHH
Confidence 764 23344555555555556677777777777777653 4455566666666677788888888887777664 44667
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 043480 232 TYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFC 311 (493)
Q Consensus 232 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (493)
.|...+..-.....++.|..+|.+.... .|+..+|.--+..---.+..++|+.++++.++..+. -...|..+.+.+-
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHH
Confidence 7777777777778888888888777663 466667766666666677788888888777776433 3345666677777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHH
Q 043480 312 KGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYG 391 (493)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 391 (493)
+.++.+.|.+.|..-.+. ++.....|..+...--+.|+.-.|..+++...-.+ +.+...|-..|++-.+.|+.+.|..
T Consensus 697 ~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHH
Confidence 777777777777766654 33344556666666667778888888888777665 6677788888888888888888887
Q ss_pred HHHHHHhCCCCCCHhhHHHHH------------------------------HHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 043480 392 VFLDMVEQGITPDVISYNALI------------------------------NGLCKSSRVSEAMHLYEEMQIRGAHPDEV 441 (493)
Q Consensus 392 ~~~~~~~~~~~p~~~~~~~l~------------------------------~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 441 (493)
+..+.++. ++.+...|..-| ..+....+++.|...|.+..+.+.. +..
T Consensus 775 lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD 852 (913)
T KOG0495|consen 775 LMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGD 852 (913)
T ss_pred HHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cch
Confidence 77777654 233333444433 3444444455555555555443211 344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 442 TFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 442 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
+|.-+...+.++|.-++-.+++.+...
T Consensus 853 ~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 853 AWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 444444445555554444445444443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-16 Score=132.36 Aligned_cols=460 Identities=11% Similarity=0.108 Sum_probs=308.7
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHH-HHHHHHHhcCChhHHHHHHHHhccCCCCcCh----hhHHH
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYN-RFIGVLIRHSRFDLVQFYYQQMHPLGFSLTP----FTYSR 84 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 84 (493)
.+...|++-|..+....+|+..|+-+.+...-|+.-... .+...+.+.+++.+|+++|+-.+..-++.+. ...+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 345567888888899999999999888766566655443 3557888999999999999988876333332 34455
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN---- 160 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 160 (493)
+.-.+.+.|++ +.|+..|+...+ ..|+..+-..|+-++..-|+-++..+.|.+|+.-...||.
T Consensus 282 igvtfiq~gqy-----------~dainsfdh~m~--~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi 348 (840)
T KOG2003|consen 282 IGVTFIQAGQY-----------DDAINSFDHCME--EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI 348 (840)
T ss_pred cCeeEEecccc-----------hhhHhhHHHHHH--hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc
Confidence 55567788999 677788888777 4677776666666777889999999999999865333332
Q ss_pred --------HhHHHHH-----HHHhccCc--hhHHHHHHHHHHhCCCCCChh-------------hHH--------HHHHH
Q 043480 161 --------KACAALV-----VGLCGDGK--VDLAYELTVGAMKGKVEFGVL-------------IYN--------ALISG 204 (493)
Q Consensus 161 --------~~~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~-------------~~~--------~l~~~ 204 (493)
...+..+ ....+.+. .+.++-.-.+++.--+.|+.. .+. .-..-
T Consensus 349 ~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~ 428 (840)
T KOG2003|consen 349 KEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGE 428 (840)
T ss_pred CCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence 2222222 11111111 112221111121111122210 010 11234
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHH
Q 043480 205 FCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAI--LNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLD 282 (493)
Q Consensus 205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 282 (493)
+.++|+++.|.++++-+.+..-+.-...-+.+ +..+.-..++..|.+.-+...... .-++.....-.+.....|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence 77899999999999888765423222223332 233333456777777776665432 123333333334455688999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043480 283 KAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMR 362 (493)
Q Consensus 283 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 362 (493)
+|.+.+++.+.....-....||. .-.+-..|+.++|++.|-++..- ...+...+..+...|-...+...|++++-+..
T Consensus 508 ka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 99999998887533222222332 33456678999999988776543 23367777788888888899999999887776
Q ss_pred hCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 043480 363 GMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVT 442 (493)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 442 (493)
.. ++.|+.+++.+...|-+.|+-..|.+.+-.--.. ++-+..+...|...|....-+++++.+|++..- ++|+..-
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~k 661 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSK 661 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHH
Confidence 54 4778889999999999999999998887665554 566788888888888888888999999998754 6789999
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhchh
Q 043480 443 FKLLIGGLV-QEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDA 490 (493)
Q Consensus 443 ~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 490 (493)
|..++..|. +.|++..|..+++...+ .++-|...+.-|++-+...|.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 988876554 57999999999998877 478888888888887766553
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-14 Score=131.96 Aligned_cols=368 Identities=13% Similarity=0.111 Sum_probs=264.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
....+......|++++|.+++.++++.+ |.+...|..|..+|-.+|+.+++...+-.+-..+ +.|...|..+......
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHh
Confidence 3444555666699999999999999997 7888999999999999999999998887765554 5566889999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH----hHHHHH
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNK----ACAALV 167 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~ 167 (493)
.|++ ++|.-.|.+.++. .+++....-.-+..|-+.|+...|.+-|.++.....+.|.. .....+
T Consensus 220 ~~~i-----------~qA~~cy~rAI~~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~ 287 (895)
T KOG2076|consen 220 LGNI-----------NQARYCYSRAIQA-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA 287 (895)
T ss_pred cccH-----------HHHHHHHHHHHhc-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 9999 6777888888876 45555555556778899999999999999998874322322 233345
Q ss_pred HHHhccCchhHHHHHHHHHHh-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------------
Q 043480 168 VGLCGDGKVDLAYELTVGAMK-GKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCE------------------- 227 (493)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------- 227 (493)
..+...++-+.|.+.+..... .+-..+...++.++..+.+...++.+......+......
T Consensus 288 ~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~ 367 (895)
T KOG2076|consen 288 HYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNAL 367 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccc
Confidence 556667777888888887776 222456677888999999999999999888777662222
Q ss_pred --------CCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 043480 228 --------PDLVTYNAILNYYCDEVMLDEAEKLVMEMESCG--IEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGL 297 (493)
Q Consensus 228 --------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 297 (493)
++..++ .+.-++.+....+....+........ ..-+...|.-+..++...|++..|+.+|..+....+.
T Consensus 368 ~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 368 CEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred ccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 222221 12223334444444444455555544 3335667788888999999999999999888887777
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh--------CCCCCC
Q 043480 298 RDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRG--------MNLSPD 369 (493)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~ 369 (493)
.+...|-.+..+|...|..++|.+.|+...... +-+...-..|...+.+.|+.++|.+.+..+.. ....|+
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e 525 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPE 525 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHH
Confidence 778888888999999999999999999888762 22444556666777888999999888887542 233455
Q ss_pred HHhHHHHHHHHHccCCHhHHHHHHHH
Q 043480 370 RILYTTIIDCLCKSREIGTAYGVFLD 395 (493)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 395 (493)
..........+.+.|+.++=..+...
T Consensus 526 ~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 526 RRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55555566666677776654443333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-13 Score=123.06 Aligned_cols=409 Identities=11% Similarity=0.005 Sum_probs=303.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhcc----CCCCcChhhHHHHHHHHh
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHP----LGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ll~~~~ 90 (493)
|--+|.+..-++.|.++++.+.+. +|.+..+|..-...--.+|+.+...++..+.+. .|+..+...|..=...|-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 445677778888999999998887 688888888888888888888888877766543 355555555555445554
Q ss_pred ccCChhhHHHHHHHHH--------------------------HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHH
Q 043480 91 EVKNFTLINILLDNMD--------------------------KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKA 144 (493)
Q Consensus 91 ~~~~~~~a~~~~~~~~--------------------------~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 144 (493)
..|..-....+....+ +-|..+|...++- ++.+...|......--..|..+.-
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHH
Confidence 4444433333333322 5567777777765 555677888887777778888888
Q ss_pred HHHHHHHHHCCCCCC-HHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 145 VQAWEHMIENGIKPD-NKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKW 223 (493)
Q Consensus 145 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 223 (493)
..+|.+.... .|. ...|.....-+...|+...|..++....+.. +-+...|-..+.....+..++.|..+|.+...
T Consensus 570 ~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 570 EALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 8899888876 333 3444555566677899999999999888876 44778888888888889999999999988876
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhH
Q 043480 224 NGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSY 303 (493)
Q Consensus 224 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 303 (493)
. .|+...|..-+..---.+..++|.+++++..+. ++.-...|..+.+.+.+.++.+.|...|..-....+. .+..|
T Consensus 647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~-~ipLW 722 (913)
T KOG0495|consen 647 I--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN-SIPLW 722 (913)
T ss_pred c--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC-CchHH
Confidence 5 677777776666666788899999999888764 2334566777778888888888888887666554332 55667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------------------
Q 043480 304 NTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM------------------- 364 (493)
Q Consensus 304 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------- 364 (493)
-.+...--+.|++-+|..+++.....++. +...|...+..-.+.|+.+.|..++.+..+.
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence 77777777788888899999888877544 7778888888888888888888777665432
Q ss_pred ----------CCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 365 ----------NLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 365 ----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
....|+.+.-.+...+.....++.|.+.|.+.++.+ +-+..+|..+...+..+|.-+.-.+++......
T Consensus 802 rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 802 RKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred cchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 112345556666777777788999999999999864 335678888999999999989899999998775
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-14 Score=129.23 Aligned_cols=323 Identities=12% Similarity=0.053 Sum_probs=215.6
Q ss_pred CccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChh
Q 043480 1 MIQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPF 80 (493)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (493)
+|+..|.++..|..|...|-..|+.+++...+-.+-..+ |.|...|..+.....+.|++++|.-.|.++++.. +++..
T Consensus 165 vIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~ 242 (895)
T KOG2076|consen 165 VIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWE 242 (895)
T ss_pred HHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchH
Confidence 367788999999999999999999999999887777665 7778889999999999999999999999999886 55555
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHH----------------------------HHHHHHHHHHHhC-CCCCCHhhHHHH
Q 043480 81 TYSRFISGLCEVKNFTLINILLDNMD----------------------------KLALEVFHKMVSK-GREPDVVTYTIV 131 (493)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~----------------------------~~a~~~~~~~~~~-g~~~~~~~~~~l 131 (493)
.+-.-...|.+.|+...|...+.++. +.|.+.++..... +...+...++.+
T Consensus 243 ~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ 322 (895)
T KOG2076|consen 243 LIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNIL 322 (895)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHH
Confidence 55566777888888877666555544 3455555554442 223345567777
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHhH--------------------------HHHHHHHhccCchhHHHHHHHH
Q 043480 132 IDGLCKAKEFDKAVQAWEHMIENGIKPDNKAC--------------------------AALVVGLCGDGKVDLAYELTVG 185 (493)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------------------~~l~~~~~~~~~~~~a~~~~~~ 185 (493)
+..+.+...++.+......+......+|..-+ ..+.-++...+..+....+...
T Consensus 323 ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~ 402 (895)
T KOG2076|consen 323 AELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHF 402 (895)
T ss_pred HHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHH
Confidence 77777777777777777666552212221111 1223333444444444444444
Q ss_pred HHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 043480 186 AMKGK--VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEP 263 (493)
Q Consensus 186 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 263 (493)
+.... +.-+...|..+..+|...|++.+|+.+|..+.......+...|-.+..+|...|..++|.+.|+...... +.
T Consensus 403 l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~ 481 (895)
T KOG2076|consen 403 LVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PD 481 (895)
T ss_pred HHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CC
Confidence 44443 3345567778888888888888888888888876555566778888888888888888888888887643 33
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC--------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 043480 264 DVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAK--------GLRDKVSYNTVIEAFCKGGQTRRAYKLFEGM 326 (493)
Q Consensus 264 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 326 (493)
+...--.|...+.+.|+.++|.+.+..+...+ ..|+..........+.+.|+.++-+++...|
T Consensus 482 ~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 482 NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44455566677778888888888877754221 1112222333344555566665544444333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.8e-13 Score=114.67 Aligned_cols=438 Identities=11% Similarity=0.036 Sum_probs=326.8
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
...+..+|...+.+=+++..+..|+.+++++...- |.-...|...+.+--..|+...|.++|++-.+- +|+..+|.+
T Consensus 103 d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~s 179 (677)
T KOG1915|consen 103 DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLS 179 (677)
T ss_pred ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHH
Confidence 34566788889999999999999999999998863 444456777777777899999999999999876 799999999
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH---
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNK--- 161 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 161 (493)
.+..-.+-+.+ +.|..++++.+- ++|++.+|-...+.-.++|+...|..+|+...+. -.|..
T Consensus 180 fI~fElRykei-----------eraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e 244 (677)
T KOG1915|consen 180 FIKFELRYKEI-----------ERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAE 244 (677)
T ss_pred HHHHHHHhhHH-----------HHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHH
Confidence 99999998888 566777777776 6899999999999999999999999999998864 12333
Q ss_pred -hHHHHHHHHhccCchhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCH---HHHHH-----HHHHHHHCCCCCCH
Q 043480 162 -ACAALVVGLCGDGKVDLAYELTVGAMKGKVEFG--VLIYNALISGFCRTGRI---RRAMA-----IKSFMKWNGCEPDL 230 (493)
Q Consensus 162 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~---~~a~~-----~~~~~~~~~~~~~~ 230 (493)
.+.+....-..+..++.|.-+|.-.++.- +.+ ...|..+...--+-|+. ++++- -|+.+.+.+ +.|-
T Consensus 245 ~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nY 322 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCc
Confidence 33333344456788899999998888753 222 44555555544455654 33332 244555554 7788
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCh--hhHHHHHH-----HH---HccCCHHHHHHHHHHHHHcCCCCCh
Q 043480 231 VTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDV--YSYNQLLK-----GL---CNSNQLDKAYMFMVKKMEAKGLRDK 300 (493)
Q Consensus 231 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-----~~---~~~~~~~~a~~~~~~~~~~~~~~~~ 300 (493)
.+|--.++.-...|+.+...++|+..... ++|-. ..|...+- ++ ....+.+.+.+++...++.-+. ..
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH-kk 400 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH-KK 400 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc-cc
Confidence 88888888888889999999999998864 44421 11222211 11 2467889999999888874332 44
Q ss_pred hhHHH----HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 043480 301 VSYNT----VIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTI 376 (493)
Q Consensus 301 ~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 376 (493)
.+|.- ....-.+..++..|.+++...+- .-|...+|...|..-.+.++++.+..+++...+.+ |.+..+|...
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ky 477 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKY 477 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHH
Confidence 44433 34444567889999999987764 46788889999998899999999999999999887 6788899999
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----
Q 043480 377 IDCLCKSREIGTAYGVFLDMVEQG-ITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV---- 451 (493)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~---- 451 (493)
...-...|+.+.|..+|.-+++.. +......|.+.|+--...|.++.|..+++++++. .+...+|.+...--.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccc
Confidence 988889999999999999988752 1222346777777777899999999999999885 345557766654333
Q ss_pred -hcC-----------CHHHHHHHHHHHHHc
Q 043480 452 -QEK-----------KLELACRLWDQMMEK 469 (493)
Q Consensus 452 -~~g-----------~~~~a~~~~~~~~~~ 469 (493)
+.+ ....|.++|+++...
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 333 466788888887654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.6e-16 Score=130.56 Aligned_cols=422 Identities=14% Similarity=0.058 Sum_probs=286.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHH
Q 043480 13 RAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS----IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISG 88 (493)
Q Consensus 13 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 88 (493)
..+...+.+..++.+|++.|.-.+..-+..+- .+.+.+...+.+.|+|+.|+..|+...+. .|+..+-..|+-+
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~ 318 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIIC 318 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhh
Confidence 34566788899999999999887765322222 23444555678899999999999999876 5887766666666
Q ss_pred HhccCChhhHHHHHHHHHHHHHHHHHHHHhCC------------CCCCHhhHHHHHH-----HHhccC--CHHHHHHHHH
Q 043480 89 LCEVKNFTLINILLDNMDKLALEVFHKMVSKG------------REPDVVTYTIVID-----GLCKAK--EFDKAVQAWE 149 (493)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g------------~~~~~~~~~~l~~-----~~~~~~--~~~~a~~~~~ 149 (493)
+..-|+- ++-.+.|.+|+... ..|+....+..+. -.-+.+ +-++++-.-.
T Consensus 319 ~f~i~d~-----------ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~ 387 (840)
T KOG2003|consen 319 AFAIGDA-----------EKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAA 387 (840)
T ss_pred heecCcH-----------HHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 6677887 44556666665431 1223333332221 111111 1222222222
Q ss_pred HHHHCCCCCCHH-----h--------HH--------HHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHH-HHh
Q 043480 150 HMIENGIKPDNK-----A--------CA--------ALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISG-FCR 207 (493)
Q Consensus 150 ~~~~~~~~~~~~-----~--------~~--------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 207 (493)
+++.--+.|+-. + +. .-..-+.++|+++.|.+++.-..+..-......-+.|... |.+
T Consensus 388 kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flq 467 (840)
T KOG2003|consen 388 KIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQ 467 (840)
T ss_pred HHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHh
Confidence 222222233311 0 00 0123356889999999998877765433223333333322 233
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 043480 208 -TGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYM 286 (493)
Q Consensus 208 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 286 (493)
..++..|..+-+...... .-+......-.......|++++|.+.+++.....-......|+. .-.+...|++++|++
T Consensus 468 ggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald 545 (840)
T KOG2003|consen 468 GGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALD 545 (840)
T ss_pred cccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHH
Confidence 346888888877766432 33333333333444568999999999999987543333333333 235678899999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 043480 287 FMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNL 366 (493)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 366 (493)
.|-++...-. .+..+...+.+.|-...++..|++++.+.... ++.|+..++.+...|-+.|+...|...+-+--+. +
T Consensus 546 ~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-f 622 (840)
T KOG2003|consen 546 CFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-F 622 (840)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-c
Confidence 9988765322 26666777888888899999999999888765 6678999999999999999999998876544433 3
Q ss_pred CCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 043480 367 SPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGL-CKSSRVSEAMHLYEEMQIRGAHPDEVTFKL 445 (493)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 445 (493)
+.+..+...+...|....-++++..+|++..- +.|+..-|..++..| .+.|++..|..+++...+. ++-|...+..
T Consensus 623 p~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkf 699 (840)
T KOG2003|consen 623 PCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKF 699 (840)
T ss_pred CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHH
Confidence 77888999999999999999999999998765 589999999888655 4689999999999999775 5558999999
Q ss_pred HHHHHHhcCC
Q 043480 446 LIGGLVQEKK 455 (493)
Q Consensus 446 l~~~~~~~g~ 455 (493)
|++.+...|-
T Consensus 700 lvri~~dlgl 709 (840)
T KOG2003|consen 700 LVRIAGDLGL 709 (840)
T ss_pred HHHHhccccc
Confidence 9999988874
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-13 Score=118.56 Aligned_cols=419 Identities=13% Similarity=0.028 Sum_probs=243.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHh
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF-SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (493)
+-...+-|.++|++++|++.|.++++.. |+ +.-|.....+|...|+|+++.+.--+.++.+ +.-+.++..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHH
Confidence 4445677888999999999999999864 55 6677788888999999999998888887754 233456666677777
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH-HHHHC--CCCCCHHhHHHHH
Q 043480 91 EVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWE-HMIEN--GIKPDNKACAALV 167 (493)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~--~~~~~~~~~~~l~ 167 (493)
..|+++++..-. .+.-+++.. . +..+--.+=+.+-+ .|..-.+ .+.+. .+-|+.....+..
T Consensus 195 ~lg~~~eal~D~-----tv~ci~~~F-----~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf 258 (606)
T KOG0547|consen 195 QLGKFDEALFDV-----TVLCILEGF-----Q-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYF 258 (606)
T ss_pred hhccHHHHHHhh-----hHHHHhhhc-----c-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 778775543110 111111111 1 11110000011111 1111111 12211 1234444333333
Q ss_pred HHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHH----h-cCCHHHHHHHHHHHHHC---CCC---CC------H
Q 043480 168 VGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFC----R-TGRIRRAMAIKSFMKWN---GCE---PD------L 230 (493)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~-~~~~~~a~~~~~~~~~~---~~~---~~------~ 230 (493)
..+...-. .....+.......+..++. . ...+..|...+.+-... ... .| .
T Consensus 259 ~sF~~~~~------------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A 326 (606)
T KOG0547|consen 259 GSFHADPK------------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMA 326 (606)
T ss_pred hhcccccc------------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHH
Confidence 33321100 0000000000111111110 0 00122222222211100 000 01 1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 043480 231 VTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAF 310 (493)
Q Consensus 231 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (493)
.+.......+.-.|+.-.+..-|+...+.... +...|-.+..+|....+.++....|.+.....+. ++.+|..-.+.+
T Consensus 327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMR 404 (606)
T ss_pred HHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHH
Confidence 12222222344567778888888888775422 2233666777788888888888888888776654 667777777777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHH
Q 043480 311 CKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAY 390 (493)
Q Consensus 311 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 390 (493)
.-.+++++|..=|++.+...+. +...|..+.-+..+.+.++++...|++.++. +|..+..|+.....+...++++.|.
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHH
Confidence 7788888888888888776332 5556666666667788888888888888764 3666778888888888888888888
Q ss_pred HHHHHHHhCCCCCC---------HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043480 391 GVFLDMVEQGITPD---------VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACR 461 (493)
Q Consensus 391 ~~~~~~~~~~~~p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 461 (493)
+.|+..++. .|+ +.+-..++. +.-.+++..|.+++++..+.+.+ ....|..|...-.+.|+.++|++
T Consensus 483 k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 483 KQYDKAIEL--EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred HHHHHHHhh--ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHH
Confidence 888888764 222 111122222 22347888888888888875433 56778888888888888888888
Q ss_pred HHHHHHHc
Q 043480 462 LWDQMMEK 469 (493)
Q Consensus 462 ~~~~~~~~ 469 (493)
+|++....
T Consensus 559 lFEksa~l 566 (606)
T KOG0547|consen 559 LFEKSAQL 566 (606)
T ss_pred HHHHHHHH
Confidence 88887653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-12 Score=112.39 Aligned_cols=312 Identities=12% Similarity=0.042 Sum_probs=235.2
Q ss_pred HHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccC
Q 043480 167 VVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGC--EPDLVTYNAILNYYCDEV 244 (493)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~ 244 (493)
..++....+.+++..-.......|.+.+...-+....+.-...+++.|+.+|+++.+... -.|..+|..++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 344555557777777777777777665555555556666677889999999999887631 124566766663322211
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 043480 245 MLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFE 324 (493)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 324 (493)
....+.+-...-.+--+.|...+.+-|.-.++.++|...|+++++-++. ....|+.+..-|....+...|.+-|+
T Consensus 314 ----kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 ----KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred ----HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 1122222111111234567778888888899999999999999987654 66789999999999999999999999
Q ss_pred HHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC
Q 043480 325 GMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD 404 (493)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 404 (493)
...+-++ .|-..|-.+.++|...+.+.=|+-.|++..+.. |.|...|.+|..+|.+.++.++|...|.+....| ..+
T Consensus 389 rAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 9998754 488999999999999999999999999999876 7889999999999999999999999999999876 336
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043480 405 VISYNALINGLCKSSRVSEAMHLYEEMQIR----GAH-P-DEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVS 478 (493)
Q Consensus 405 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 478 (493)
...+..|...|-+.++.++|.+.|++.++. |.. | .....--|..-+.+.+++++|......... | .+...--
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~-~~e~eea 543 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G-ETECEEA 543 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C-CchHHHH
Confidence 688999999999999999999999887552 222 2 123333356777889999999888777765 3 6777777
Q ss_pred HHHHHHHhhc
Q 043480 479 AALIEAIHLQ 488 (493)
Q Consensus 479 ~~ll~~~~~~ 488 (493)
+.|++.+++.
T Consensus 544 k~LlReir~~ 553 (559)
T KOG1155|consen 544 KALLREIRKI 553 (559)
T ss_pred HHHHHHHHHh
Confidence 8888877654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-12 Score=114.37 Aligned_cols=468 Identities=11% Similarity=0.022 Sum_probs=324.5
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
-+..-+..+++-+..+.++..|.-+-+++...+ .++..-..+++++.-.|+++.|..+...-.-. ..|..+.....
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~ 89 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAA 89 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHH
Confidence 345567777888888889999998888887754 56666777888888899999988887765332 46677777777
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC---CCCCC-----------HhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSK---GREPD-----------VVTYTIVIDGLCKAKEFDKAVQAWEHMI 152 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~---g~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (493)
.++.+..+++.+..++.... .....|..-... -..+| ...+-.-...|....++++|...|.+..
T Consensus 90 ~~l~~lk~~~~al~vl~~~~-~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al 168 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGH-VETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEAL 168 (611)
T ss_pred HHHHHHHHHHHHHHHhcccc-hhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHH
Confidence 88888888977776665321 011111110000 01111 1111112234455566777777777766
Q ss_pred HCCCCCCHHhHHHHHHHHhcc-----------------C-chhHHHHHHHHHHh----------------CCCCCChhhH
Q 043480 153 ENGIKPDNKACAALVVGLCGD-----------------G-KVDLAYELTVGAMK----------------GKVEFGVLIY 198 (493)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~-----------------~-~~~~a~~~~~~~~~----------------~~~~~~~~~~ 198 (493)
...+. ....+..++....-. + +.+.-...|+.... .+...+....
T Consensus 169 ~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll 247 (611)
T KOG1173|consen 169 LADAK-CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLL 247 (611)
T ss_pred hcchh-hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHH
Confidence 54221 222222222221110 0 11111111221100 0112233444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 043480 199 NALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNS 278 (493)
Q Consensus 199 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 278 (493)
..-..-+...+++.+..++.+...... +++...+-.-|.++...|+..+...+=..+.+. .|..+.+|-++.-.|...
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHh
Confidence 455566777899999999999998775 677777777777888899888887777777765 356788999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHH
Q 043480 279 NQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLL 358 (493)
Q Consensus 279 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 358 (493)
|+..+|++.|.+...-.+. =...|-.....|+-.|..++|+..|....+. ++-....+--+.--|.+.++.+.|.+.|
T Consensus 326 ~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred cCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999998776443 3456888889999999999999999888765 2212223334555678899999999999
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhC--CC----CCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043480 359 NQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQ--GI----TPDVISYNALINGLCKSSRVSEAMHLYEEMQ 432 (493)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 432 (493)
.+..... |.|+..++-+.-.....+.+.+|...|+..++. .+ .--..+++.|..+|.+.+.+++|+..+++.+
T Consensus 404 ~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 404 KQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 9998765 677888888888778889999999999987732 01 1134568899999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 043480 433 IRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQ 488 (493)
Q Consensus 433 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 488 (493)
....+ +..++.++.-.|...|+++.|...|.+.+ .+.|+..+.+.++..+-..
T Consensus 483 ~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 483 LLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred HcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 86333 89999999999999999999999999998 6799998888888765443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-17 Score=141.60 Aligned_cols=270 Identities=15% Similarity=0.055 Sum_probs=73.0
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSN-CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
..+.|+...+ .++..+.+.|++++|++++++..... .+.++..|..+.......++++.|+..++++...+ +.++..
T Consensus 3 ~~~~~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~ 80 (280)
T PF13429_consen 3 AEFGPSEEAL-RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQD 80 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 3444443333 56778888888888888885544332 24455555566666677778888888888887765 335555
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCH
Q 043480 82 YSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG-IKPDN 160 (493)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 160 (493)
+..++.. ...+++ ++|.+++....+. .++...+..++..+.+.++++++.++++.+.... .+++.
T Consensus 81 ~~~l~~l-~~~~~~-----------~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 146 (280)
T PF13429_consen 81 YERLIQL-LQDGDP-----------EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSA 146 (280)
T ss_dssp ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-H
T ss_pred ccccccc-cccccc-----------ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCH
Confidence 6666665 566666 3444444443332 2345556666677777777777777777766432 23344
Q ss_pred HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043480 161 KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYY 240 (493)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 240 (493)
..+..+...+.+.|+.++|.+.+++.++.. |.+..+.+.++..+...|+.+++.++++...+.. +.|+..+..+..++
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAY 224 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHh
Confidence 555555555666666666666666665543 2234455555555555555555555555544432 33344445555555
Q ss_pred HccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 043480 241 CDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKK 291 (493)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 291 (493)
...|+.++|...++...+.. +.|+.....+..++...|+.++|..+..+.
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 55555555555555555432 334555555555555555555555554443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-12 Score=111.65 Aligned_cols=364 Identities=10% Similarity=0.006 Sum_probs=263.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCC
Q 043480 41 RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKG 120 (493)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g 120 (493)
..|...+...+.++.+.|....|+..|......- +-.-.+|..|...+ .+. +....+...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~---------------e~~~~l~~~- 220 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDI---------------EILSILVVG- 220 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chH---------------HHHHHHHhc-
Confidence 4555555556667778888888888888876542 33334444443332 222 222223222
Q ss_pred CCCC-HhhHH-HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCC--CCChh
Q 043480 121 REPD-VVTYT-IVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKV--EFGVL 196 (493)
Q Consensus 121 ~~~~-~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~ 196 (493)
.+.| ...-. -+..++....+.+++++-++.....|++-+...-+....+.....+++.|+.+|+++.+..+ --|..
T Consensus 221 l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmd 300 (559)
T KOG1155|consen 221 LPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMD 300 (559)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHH
Confidence 2222 11111 13356666678889999999999988876766667777777888999999999999998742 13567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 043480 197 IYNALISGFCRTGRIRRAMAIKSF-MKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGL 275 (493)
Q Consensus 197 ~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (493)
+|+.++. .++.+..- ..+-+ ....+ +-.+.|...+.+.|.-.++.++|...|++..+.+ +.....|+.+.+-|
T Consensus 301 lySN~LY--v~~~~skL--s~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEy 374 (559)
T KOG1155|consen 301 LYSNVLY--VKNDKSKL--SYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEY 374 (559)
T ss_pred HHhHHHH--HHhhhHHH--HHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHH
Confidence 7777764 33333222 11111 11111 4456678888899999999999999999999875 44567889999999
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHH
Q 043480 276 CNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAE 355 (493)
Q Consensus 276 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 355 (493)
....+...|...++.+++..+. |-..|..+.++|.-.+.+.-|+-.|++..... +.|...|.+|..+|.+.++.++|+
T Consensus 375 vEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAi 452 (559)
T KOG1155|consen 375 VEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAI 452 (559)
T ss_pred HHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999998765 88999999999999999999999999998863 458899999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhC----C-CCC-CHhhHHHHHHHHHhcCChhHHHHHHH
Q 043480 356 KLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQ----G-ITP-DVISYNALINGLCKSSRVSEAMHLYE 429 (493)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (493)
+.|......+ ..+...+..+...|-+.++..+|...|.+.++. | ..| ......-|..-+.+.+++++|.....
T Consensus 453 KCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 453 KCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 9999999877 567789999999999999999999999887752 2 222 12222334555667788887776655
Q ss_pred HHHH
Q 043480 430 EMQI 433 (493)
Q Consensus 430 ~~~~ 433 (493)
....
T Consensus 532 ~~~~ 535 (559)
T KOG1155|consen 532 LVLK 535 (559)
T ss_pred HHhc
Confidence 5443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-13 Score=125.56 Aligned_cols=294 Identities=9% Similarity=-0.011 Sum_probs=153.0
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 043480 137 KAKEFDKAVQAWEHMIENGIKPDN-KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAM 215 (493)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 215 (493)
..|+++.|.+.+.+..+. .|+. ..+.....+....|+.+.|.+.+....+....+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 457777777777666554 2332 2233344555666777777777766655421222223333456666677777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHH-HHHHHHHccCCHHHHHHHHHHHHHc
Q 043480 216 AIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYN-QLLKGLCNSNQLDKAYMFMVKKMEA 294 (493)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 294 (493)
..++.+.+.. |.++.....+...+...|+++++.+.+..+.+.+.. +...+. ....++
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~------------------- 232 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE------------------- 232 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH-------------------
Confidence 7777766664 445556666666677777777777777776665432 222121 111110
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 043480 295 KGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGI---ELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRI 371 (493)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 371 (493)
......+..++..+.+..+.+..+ +.+...+..+...+...|+.++|.+.+++..+.. +.+..
T Consensus 233 -------------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~ 298 (409)
T TIGR00540 233 -------------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRA 298 (409)
T ss_pred -------------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCccc
Confidence 000111111111222222222211 1244555555556666666666666666655542 11111
Q ss_pred h--HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043480 372 L--YTTIIDCLCKSREIGTAYGVFLDMVEQGITPDV--ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLI 447 (493)
Q Consensus 372 ~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 447 (493)
. ...........++.+.+.+.+++..+. .+-|+ ....++...+.+.|++++|.+.|+........|+...+..+.
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 0 011111112335556666666666654 12233 445566677777777777777777433322456666666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 043480 448 GGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~ 468 (493)
..+.+.|+.++|.++|++.+.
T Consensus 378 ~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777776644
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=137.34 Aligned_cols=261 Identities=18% Similarity=0.111 Sum_probs=85.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 043480 130 IVIDGLCKAKEFDKAVQAWEHMIENGIKP-DNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRT 208 (493)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 208 (493)
.+...+.+.|++++|++++++......+| +...+..+...+...++++.|...++.+...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45667777888888888886554432123 33444445555666777777777777777654 2245556666665 567
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHccCCHHHHHHH
Q 043480 209 GRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCG-IEPDVYSYNQLLKGLCNSNQLDKAYMF 287 (493)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 287 (493)
+++++|.++++..-+. .+++..+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777665443 3455556666666777777777777777765422 234556666666777777777777777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 043480 288 MVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLS 367 (493)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 367 (493)
+++.+...+. +......++..+...|+.+++.+++....+.. +.++..+..+..++...|+.++|..+|+...+.. +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 7777766543 55556666666666677776666666665542 3355556666666777777777777777666544 4
Q ss_pred CCHHhHHHHHHHHHccCCHhHHHHHHHHHH
Q 043480 368 PDRILYTTIIDCLCKSREIGTAYGVFLDMV 397 (493)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 397 (493)
.|+.....+..++...|+.++|.++..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 566666666777777777777776666554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-13 Score=122.11 Aligned_cols=252 Identities=10% Similarity=0.011 Sum_probs=153.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH
Q 043480 206 CRTGRIRRAMAIKSFMKWNGCEPDLVTYN--AILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDK 283 (493)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 283 (493)
.+.|+++.|...+.++.+. .|+..... .....+...|+++.|...++.+.+.. |.++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4555555555555555543 33332221 22344455555555555555555443 3344455555555555556665
Q ss_pred HHHHHHHHHHcCCCCCh-------hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHH
Q 043480 284 AYMFMVKKMEAKGLRDK-------VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEK 356 (493)
Q Consensus 284 a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 356 (493)
|..++..+.+....++. ..|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555554333111 11222222233334455555666665443 23466777778888888888888888
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 043480 357 LLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGA 436 (493)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 436 (493)
++++..+. +++.... ++.+....++.+++.+..+...+.. +-|...+..+...|.+.|++++|.+.|+...+.
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-- 357 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-- 357 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 88877763 4554322 2333345578888888888887662 445566777888888888888888888888773
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 437 HPDEVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 437 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
.|+...+..+..++.+.|+.++|...+++.+.
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67888888888888888888888888887764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-13 Score=122.57 Aligned_cols=284 Identities=12% Similarity=0.045 Sum_probs=213.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHH--HHHHHHHhcCCHHHHH
Q 043480 138 AKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYN--ALISGFCRTGRIRRAM 215 (493)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 215 (493)
.|+++.|.+......+..-.| ...+..........|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 699999998887766542111 222333344557889999999999998875 34443222 3467888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChh-------hHHHHHHHHHccCCHHHHHHHH
Q 043480 216 AIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVY-------SYNQLLKGLCNSNQLDKAYMFM 288 (493)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~ 288 (493)
..++++.+.. +-++.....+...|.+.|+++++..++..+.+.+..++.. .|..++.......+.+...+.+
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998876 6677888888999999999999999999999876543221 2233333333444555555666
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 043480 289 VKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSP 368 (493)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 368 (493)
....... ..++.....+...+...|+.++|.+++++..+. +|+... .++.+....++.+++.+..+...+.. +.
T Consensus 253 ~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 253 KNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 5554432 247778888999999999999999999999875 445422 23334445699999999999988765 67
Q ss_pred CHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 369 DRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
|...+..+...+...+++++|.+.|+...+. .|+...+..+..++.+.|+.++|.+++++...
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7778889999999999999999999999985 78999989999999999999999999998754
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-13 Score=109.31 Aligned_cols=287 Identities=17% Similarity=0.165 Sum_probs=211.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHhcCCH
Q 043480 138 AKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGV------LIYNALISGFCRTGRI 211 (493)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 211 (493)
.+++++|.++|-+|.+.. +.+..+...|.+.|.+.|..|.|+++++.+.+. ||. .+.-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 468899999999988753 235566778888888999999999999888874 332 2334566778888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHccCCHHHHHHH
Q 043480 212 RRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPD----VYSYNQLLKGLCNSNQLDKAYMF 287 (493)
Q Consensus 212 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~ 287 (493)
+.|..+|..+.+.+ ..-......++..|-...+|++|++.-+++.+.+-.+. ...|.-+...+....+.+.|...
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999888754 44455677888889999999999999988887654333 23456666677778889999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 043480 288 MVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLS 367 (493)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 367 (493)
+.+..+..+. .+..--.+.+.....|+++.|.+.++.+.++++.--+.+...|..+|...|+.++....+..+.+..
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 9998887654 5555556777888899999999999999988665556677888889999999999999998888754
Q ss_pred CCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---CChhHHHHHHHHHHHc
Q 043480 368 PDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKS---SRVSEAMHLYEEMQIR 434 (493)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 434 (493)
+....-..+...-....-.+.|...+.+-+.. .|+...+..++...... |...+....++.|...
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33333344444444444556676666666654 68888888888876543 4456666677777543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-13 Score=123.01 Aligned_cols=287 Identities=10% Similarity=-0.007 Sum_probs=157.3
Q ss_pred hcCChhHHHHHHHHhccCCCCcChh-hHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCH--hhHHHHH
Q 043480 56 RHSRFDLVQFYYQQMHPLGFSLTPF-TYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDV--VTYTIVI 132 (493)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l~ 132 (493)
..|+++.|.+.+.+..+. .|++. .+.....+....|++ +.|.+.+.+..+. .|+. .......
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~-----------~~A~~~l~~a~~~--~p~~~l~~~~~~a 160 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDE-----------ARANQHLEEAAEL--AGNDNILVEIART 160 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHh--CCcCchHHHHHHH
Confidence 456666666666665543 23322 223334555556666 3444555554442 2222 2233345
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHH-HHHH---HHHhc
Q 043480 133 DGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYN-ALIS---GFCRT 208 (493)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~ 208 (493)
..+...|+++.|.+.++.+.+.. +-+...+..+...+...|+++.|.+.+..+.+.+.. +...+. .-.. .....
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 56666667777777776666653 224455666666666667777777666666665432 222221 1111 11222
Q ss_pred CCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhh---HHHHHHHHHccCCHH
Q 043480 209 GRIRRAMAIKSFMKWNG---CEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYS---YNQLLKGLCNSNQLD 282 (493)
Q Consensus 209 ~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~ 282 (493)
+..++..+.+..+.... .+.++..+..+...+...|+.++|.+.+++..+.. |+... .....-.....++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChH
Confidence 22222223333333321 11356666667777777777777777777776643 33221 111111223346667
Q ss_pred HHHHHHHHHHHcCCCCCh--hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043480 283 KAYMFMVKKMEAKGLRDK--VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQ 360 (493)
Q Consensus 283 ~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 360 (493)
.+.+.+++..+..+. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 317 ~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 317 KLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777766665443 44 455667777777788888888777433333356777777777777778888888777776
Q ss_pred HH
Q 043480 361 MR 362 (493)
Q Consensus 361 ~~ 362 (493)
..
T Consensus 396 ~l 397 (409)
T TIGR00540 396 SL 397 (409)
T ss_pred HH
Confidence 54
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-12 Score=105.03 Aligned_cols=285 Identities=13% Similarity=0.084 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHhccCchhHHHHHH
Q 043480 107 KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD---NKACAALVVGLCGDGKVDLAYELT 183 (493)
Q Consensus 107 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 183 (493)
++|.+.|-+|.+. .+-+..+-.+|...|.+.|..|.|+++...+.++.--+. ..+...|..-|...|-+|.|+.+|
T Consensus 52 dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f 130 (389)
T COG2956 52 DKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIF 130 (389)
T ss_pred chHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 6788999999874 344556677788999999999999999999998621111 245567788899999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 043480 184 VGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDL----VTYNAILNYYCDEVMLDEAEKLVMEMESC 259 (493)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 259 (493)
..+.+.+ ..-......|+..|-...+|++|++.-+++.+.+-.+.. ..|..+...+....+++.|...+.+..+.
T Consensus 131 ~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa 209 (389)
T COG2956 131 NQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA 209 (389)
T ss_pred HHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 9999865 445667888999999999999999999999887644432 23455666666788999999999998875
Q ss_pred CCCCChhh-HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHH
Q 043480 260 GIEPDVYS-YNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTF 338 (493)
Q Consensus 260 ~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 338 (493)
+ |+..- --.+.+.....|++..|.+.++.+.+.++.--+.+...|..+|...|+.++....+..+.+... .....
T Consensus 210 ~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~ 285 (389)
T COG2956 210 D--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADAE 285 (389)
T ss_pred C--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHH
Confidence 4 33333 3345578889999999999999999987666667788899999999999999999999988643 44444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc---cCCHhHHHHHHHHHHhC
Q 043480 339 TILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK---SREIGTAYGVFLDMVEQ 399 (493)
Q Consensus 339 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 399 (493)
..+...-......+.|...+.+-... +|+...+..++..... .|...+...+++.|+..
T Consensus 286 l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 286 LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 44444444455566666655544433 7999999999988754 34566667777777643
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-12 Score=106.99 Aligned_cols=284 Identities=14% Similarity=0.066 Sum_probs=150.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043480 138 AKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAI 217 (493)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 217 (493)
.|+|.+|+++..+-.+.+-. ....|..-..+.-..|+.+.+-..+.++.+....++..+.-.........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 47788887777776666533 23344444555666777777777777777654455666666667777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChh-------hHHHHHHHHHccCCHHHHHHHHHH
Q 043480 218 KSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVY-------SYNQLLKGLCNSNQLDKAYMFMVK 290 (493)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~ 290 (493)
.+++...+ +.++.......++|.+.|++.....++..+.+.+.-.++. +|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777665 5566667777777777777777777777777776544332 233333333333322222222222
Q ss_pred HHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 043480 291 KMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDR 370 (493)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 370 (493)
.... ...++..-..++.-+.+.|+.++|.++..+..+.+..|+ -...-.+.+.++.+.-++..+...+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 2221 112333344444444555555555555555444433333 111112233444444444443333221 2333
Q ss_pred HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043480 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEM 431 (493)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 431 (493)
..+.++...|.+.+.+.+|...|+..++. .|+..+|+.+.+++.+.|+..+|.++.++.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44445555555555555555555544432 344455555555555555555555554444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-13 Score=122.35 Aligned_cols=198 Identities=16% Similarity=0.073 Sum_probs=109.9
Q ss_pred HHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---H
Q 043480 160 NKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNA---I 236 (493)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l 236 (493)
..+|..+..+|.-+++.+.|++.|++.+..+ +....+|+.+.+-+.....+|.|...|+... ..|+..|++ +
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGl 495 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGL 495 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhh
Confidence 3444444444444444444444444444332 2244555555555555566666666666555 333333333 3
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH
Q 043480 237 LNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQT 316 (493)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 316 (493)
.-.|.+.++++.|+-.|+.+.+.+ +.+.+....+...+.+.|+.++|+.+++++....+. |+..--..+..+...+++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcch
Confidence 445666666666666666666543 334455555556666666666666666666655443 333333344455556666
Q ss_pred HHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 043480 317 RRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN 365 (493)
Q Consensus 317 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 365 (493)
++|+..++++++. ++-+...+..+...|.+.|+.+.|..-|..+.+..
T Consensus 574 ~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 574 VEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 7777777766665 33344556666666667777777766666666544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9e-12 Score=104.92 Aligned_cols=293 Identities=12% Similarity=0.033 Sum_probs=233.1
Q ss_pred ccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 043480 172 GDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEK 251 (493)
Q Consensus 172 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 251 (493)
..|+|..|++...+..+.+ +.....|..-..+.-+.|+.+.+-.++.+..+..-.++....-.........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4699999999999987776 334556777778888999999999999999876335555666667778889999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh-------hHHHHHHHHHHcCCHHHHHHHHH
Q 043480 252 LVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKV-------SYNTVIEAFCKGGQTRRAYKLFE 324 (493)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~ 324 (493)
-+.++.+.+ +.++.......++|.+.|++.....++.++.+.+...+.. +|..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999998865 5677888889999999999999999999999887765543 46666666666666666666777
Q ss_pred HHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC
Q 043480 325 GMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD 404 (493)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 404 (493)
..... .+.++..-..++.-+..+|+.++|.++..+..+.+..|+ ... .-.+.+.++.+.-.+..+.-.+. .+-+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~-h~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQ-HPED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHh-CCCC
Confidence 76654 455677778888889999999999999999988776665 222 22345677888877777776654 2445
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043480 405 VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLD 474 (493)
Q Consensus 405 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 474 (493)
+..+.+|...|.+.+.+.+|...|+...+ ..|+..+|..+.+++.+.|+..+|..+.++.+..-.+|+
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 57888999999999999999999998877 479999999999999999999999999998876544443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-13 Score=121.53 Aligned_cols=285 Identities=13% Similarity=0.051 Sum_probs=216.9
Q ss_pred CchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCChHHHHH
Q 043480 174 GKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNG--CEPDLVTYNAILNYYCDEVMLDEAEK 251 (493)
Q Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~ 251 (493)
-+..+|...|..+.... .-+..+...+..+|...+++++|.++|+.+.+.. ..-+..+|...+-.+-+ +-+..
T Consensus 333 y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 35678888888855442 3344666778889999999999999999988753 12355677777655422 12222
Q ss_pred HHH-HHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043480 252 LVM-EMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRG 330 (493)
Q Consensus 252 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 330 (493)
.+. .+.+. .+..+.+|.++.++|.-.++.+.|++.|+++++..+. ...+|+.+..-+.....+|.|...|+......
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 232 23332 2567889999999999999999999999999887543 67788888888888899999999999887652
Q ss_pred CCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHH
Q 043480 331 IELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNA 410 (493)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 410 (493)
.+ +-..|--+...|.+.++++.|+-.|+.+.+.+ +.+.+....+...+-+.|+.++|+++++++.....+ |+..--.
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 21 33344556778899999999999999999877 677788888888899999999999999999876433 4444444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043480 411 LINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQEKKLELACRLWDQMMEKG 470 (493)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 470 (493)
-+..+...+++++|+..++++.+. .| +..+|..+...|.+.|+.+.|+.-|..|.+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 566677789999999999999884 45 57788888999999999999999999888653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.6e-10 Score=99.87 Aligned_cols=448 Identities=12% Similarity=0.117 Sum_probs=269.0
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSN-CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
|.+|...++...++|++..-+..|++++..- +.....+|...+......+-.+-++.+|++.++. ++..-...+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 5788889999999999999999999987652 1233457888888888888899999999999864 3444677788
Q ss_pred HHhccCChhhHHHHHHHHH----------HHHHHHHHHH-------------------HhCC--CCCCH--hhHHHHHHH
Q 043480 88 GLCEVKNFTLINILLDNMD----------KLALEVFHKM-------------------VSKG--REPDV--VTYTIVIDG 134 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~----------~~a~~~~~~~-------------------~~~g--~~~~~--~~~~~l~~~ 134 (493)
.++..+++++|.+.+..++ +...++|.++ ...| .-+|. ..|++|.+.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 8889999999998888776 1122222221 1111 12232 368899999
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcc----------------C------chhHHHHHHHHHHhCC--
Q 043480 135 LCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGD----------------G------KVDLAYELTVGAMKGK-- 190 (493)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~~~~-- 190 (493)
|.+.|.+++|.++|++.... ..+..-|..+...|..- + +++-....|+.+....
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 99999999999999988764 22344444444444321 1 1222333344444322
Q ss_pred ---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCChHHHHHHHHH
Q 043480 191 ---------VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPD------LVTYNAILNYYCDEVMLDEAEKLVME 255 (493)
Q Consensus 191 ---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~ 255 (493)
-+.++..|..-+. ...|+..+-...|.+..+.- .|. ...|..+.+.|-..|+++.|..+|++
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 0122333333222 22455666667777766531 221 23577788888889999999999988
Q ss_pred HHHCCCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-----------------ChhhHHHHHHHHHHcCC
Q 043480 256 MESCGIEPD---VYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR-----------------DKVSYNTVIEAFCKGGQ 315 (493)
Q Consensus 256 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~ 315 (493)
..+...+.- ..+|.....+-.+..+++.|+.++.++......+ +...|...++.--..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 876543322 3456666666677788888888877765432221 23346666666666778
Q ss_pred HHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHc---cCCHhHHHH
Q 043480 316 TRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDR-ILYTTIIDCLCK---SREIGTAYG 391 (493)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~a~~ 391 (493)
++....+|+.+....+. ++...-.....+-...-++++.+++++-...-..|+. ..|+..+.-+.+ ...++.|..
T Consensus 493 festk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 88888888888776443 3332222222334455567777777665554334443 356665555543 235778888
Q ss_pred HHHHHHhCCCCCCHhhHHHHH--HHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 392 VFLDMVEQGITPDVISYNALI--NGLCKSSRVSEAMHLYEEMQIRGAHPD--EVTFKLLIGGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 392 ~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 467 (493)
+|++.++ |.+|...-+--|+ ..--..|-...|+.++++.... +++. ...|+..|.-....=-+.....+++++.
T Consensus 572 LFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaI 649 (835)
T KOG2047|consen 572 LFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAI 649 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 8888887 4554432211111 1112346666677777775442 3321 3445555543333322334444555555
Q ss_pred H
Q 043480 468 E 468 (493)
Q Consensus 468 ~ 468 (493)
+
T Consensus 650 e 650 (835)
T KOG2047|consen 650 E 650 (835)
T ss_pred H
Confidence 4
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.7e-12 Score=103.48 Aligned_cols=446 Identities=9% Similarity=0.015 Sum_probs=201.4
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCCh
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNF 95 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 95 (493)
+.-+....++.+|+.+++--...+-+-...+-.-+..++...|++++|...|.-+.... .++...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44566778999999999877654422222333334566778999999999999887754 67777777888888888888
Q ss_pred hhHHHHHHHHHHH---HHHHHHHHHhCCC-----------CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 043480 96 TLINILLDNMDKL---ALEVFHKMVSKGR-----------EPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNK 161 (493)
Q Consensus 96 ~~a~~~~~~~~~~---a~~~~~~~~~~g~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (493)
.+|..+.++.++. -.-+|.-..+.+. .....--.+|.......-.+++|+++|.+.... .|+-.
T Consensus 108 ~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~ 185 (557)
T KOG3785|consen 108 IEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYI 185 (557)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhhh
Confidence 7776665544310 0001111111110 001111222333333333466666666666654 23333
Q ss_pred hHHH-HHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-H
Q 043480 162 ACAA-LVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILN-Y 239 (493)
Q Consensus 162 ~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-~ 239 (493)
..+. +.-+|.+..-++.+.+++...+..- +.+...-|.......+.=+-..|..-...+...+-..-+ .-.-+++ -
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-f~~~l~rHN 263 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-FIEYLCRHN 263 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-hHHHHHHcC
Confidence 3332 2334455555566665555544431 222333332222222211111122212222211100000 0000000 0
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC-----
Q 043480 240 YCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGG----- 314 (493)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 314 (493)
+.--..-+.|.+++-.+.+. -+..-..++-.|.+.+++.+|..+.++.... ++.-|-.-.-.++..|
T Consensus 264 LVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 264 LVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGVVFAALGQETGS 335 (557)
T ss_pred eEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHHHHHHhhhhcCc
Confidence 00011122333333222221 1122223333455666666665554433211 2222211111122222
Q ss_pred --CHHHHHHHHHHHHHcCCCcCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHH
Q 043480 315 --QTRRAYKLFEGMRRRGIELDVV-TFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYG 391 (493)
Q Consensus 315 --~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 391 (493)
...-|.+.|+..-..+..-|.. .-.++..++.-..++++.+..+..+...-...|...+ .+.++++..|.+.+|++
T Consensus 336 reHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEe 414 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEE 414 (557)
T ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHH
Confidence 2233444444333333222211 1233344444445566666666666554333333333 35556666666666666
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043480 392 VFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD-EVTFKLLIGGLVQEKKLELACRLWDQMMEKG 470 (493)
Q Consensus 392 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 470 (493)
+|-++..-.++.+..-...|.++|.+.+.++.|+.++-++.. ..+ ......+..-|.+.+.+=-|.+.|+.+...
T Consensus 415 lf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l- 490 (557)
T KOG3785|consen 415 LFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL- 490 (557)
T ss_pred HHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc-
Confidence 666555433332222233445566666666666665544432 112 222333445566666666666666655532
Q ss_pred CCCCHHHHHH
Q 043480 471 FTLDKTVSAA 480 (493)
Q Consensus 471 ~~~~~~~~~~ 480 (493)
.|++.-|..
T Consensus 491 -DP~pEnWeG 499 (557)
T KOG3785|consen 491 -DPTPENWEG 499 (557)
T ss_pred -CCCccccCC
Confidence 455554443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-11 Score=103.73 Aligned_cols=386 Identities=13% Similarity=0.079 Sum_probs=248.8
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
-|..|..|.....+|..-|++++..+--...++.+ |.-+..+..-.+++-..|++.+|+.=. +..+
T Consensus 145 ~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~lg~~~eal~D~-------------tv~c 210 (606)
T KOG0547|consen 145 CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQLGKFDEALFDV-------------TVLC 210 (606)
T ss_pred CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHhhccHHHHHHhh-------------hHHH
Confidence 34448999999999999999999999999999876 333455666667777778877765321 2333
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCC---CCHhhHHHHHHHHhcc--------CC-----HHHHHHHH
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGRE---PDVVTYTIVIDGLCKA--------KE-----FDKAVQAW 148 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~l~~~~~~~--------~~-----~~~a~~~~ 148 (493)
++..+....-...+.+++. +.|.....+-.+.+.+ |+.....+....+... ++ +.++++.+
T Consensus 211 i~~~F~n~s~~~~~eR~Lk---k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l 287 (606)
T KOG0547|consen 211 ILEGFQNASIEPMAERVLK---KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEAL 287 (606)
T ss_pred HhhhcccchhHHHHHHHHH---HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHH
Confidence 3333333222222222222 3444444444442223 3333333333322211 00 11111111
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCC---CCC---C------hhhHHHHHHHHHhcCCHHHHHH
Q 043480 149 EHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGK---VEF---G------VLIYNALISGFCRTGRIRRAMA 216 (493)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~---~------~~~~~~l~~~~~~~~~~~~a~~ 216 (493)
..-.. ..+..|.+.+.+-.... ... | ..+.......+.-.|+.-.|..
T Consensus 288 ~~~~~--------------------e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 288 EKGLE--------------------EGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred HhhCc--------------------hhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 11111 12222322222221100 000 1 1111222223445688888999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 043480 217 IKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKG 296 (493)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 296 (493)
-|+..+.....+ ...|-.+...|....+.++....|....+.+ +.++.+|..-.+++.-.++++.|..-|++.+...+
T Consensus 348 d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 348 DFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP 425 (606)
T ss_pred hHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 999988775222 2236667778899999999999999998865 56788898888888889999999999999988654
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----CCHH
Q 043480 297 LRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLS-----PDRI 371 (493)
Q Consensus 297 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~ 371 (493)
. +...|-.+..+..+.+.+++++..|++.++. ++.-+..|+.....+...++++.|.+.|+..++.... .+..
T Consensus 426 e-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~ 503 (606)
T KOG0547|consen 426 E-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA 503 (606)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccch
Confidence 3 6666777777777889999999999999987 5557788999999999999999999999988864311 1222
Q ss_pred hH--HHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 372 LY--TTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 372 ~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
.+ -.++. +.-.+++..|..++++.++.. +-....|..|...-.+.|+.++|+++|++...
T Consensus 504 plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 504 PLVHKALLV-LQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhhhhHhh-hchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 22222 223489999999999999864 22456789999999999999999999998754
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.4e-11 Score=103.20 Aligned_cols=435 Identities=10% Similarity=-0.001 Sum_probs=295.4
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHh----ccCC--------
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQM----HPLG-------- 74 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~-------- 74 (493)
.||..-.-+++++.-.|+++.|..+...-.- ...|.........++.+..++++|..++... ..-.
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l--e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~ 124 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTYKL--EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAAN 124 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhc
Confidence 4455555688999999999999888875432 2456777777788899999999999998832 1100
Q ss_pred -CCcChhh----HHHH-------HHHHhccCChhhHHHHHHHHH---HHHHHHHHHHHhCCCCCCHhhHHHHHHH-Hh-c
Q 043480 75 -FSLTPFT----YSRF-------ISGLCEVKNFTLINILLDNMD---KLALEVFHKMVSKGREPDVVTYTIVIDG-LC-K 137 (493)
Q Consensus 75 -~~~~~~~----~~~l-------l~~~~~~~~~~~a~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~-~~-~ 137 (493)
+.+|..- -+.- ...|....+++.|...+.+.. -...+.|+.+++...-.....|..+... +. .
T Consensus 125 ~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~ 204 (611)
T KOG1173|consen 125 TLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAML 204 (611)
T ss_pred eeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhh
Confidence 0111110 0001 112333445555555555444 2233334444333211111223222210 00 1
Q ss_pred cCCHHHHH-HHHHHH----HH------------CCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHH
Q 043480 138 AKEFDKAV-QAWEHM----IE------------NGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNA 200 (493)
Q Consensus 138 ~~~~~~a~-~~~~~~----~~------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (493)
.+...+-+ .+|+-- .. .+..-+.........-+...+++.+..++++.+.+.. ++...++..
T Consensus 205 ~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~ 283 (611)
T KOG1173|consen 205 TKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPL 283 (611)
T ss_pred hhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHH
Confidence 11111112 222211 00 0122334445555666778899999999999999876 677778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 043480 201 LISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQ 280 (493)
Q Consensus 201 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 280 (493)
-|.++...|+..+-..+-.++.+.- |..+.+|-++.-.|...|...+|.+.|......+ +.-...|-...+.|.-.|.
T Consensus 284 ~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~E 361 (611)
T KOG1173|consen 284 HIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGE 361 (611)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcch
Confidence 8889999999888888888887763 6678899999999999999999999999887543 1224578888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043480 281 LDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQ 360 (493)
Q Consensus 281 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 360 (493)
.++|+..+..+-+.-+... ..+--+.--|.+.++.+.|.+.|.+.... .+.|+...+.+.-.....+.+.+|..+|+.
T Consensus 362 hdQAmaaY~tAarl~~G~h-lP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~ 439 (611)
T KOG1173|consen 362 HDQAMAAYFTAARLMPGCH-LPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQK 439 (611)
T ss_pred HHHHHHHHHHHHHhccCCc-chHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHH
Confidence 9999999988776432211 11222344577789999999999998876 345788888888877888999999999987
Q ss_pred HHhC----C--CCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 361 MRGM----N--LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 361 ~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
.... + ...-..+++.|.++|.+.+.+++|+..+++.+.. .+-+..++.++.-.|...|+++.|...|.+..-
T Consensus 440 ~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~- 517 (611)
T KOG1173|consen 440 ALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA- 517 (611)
T ss_pred HHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh-
Confidence 7621 1 1123457899999999999999999999999986 356888999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHH
Q 043480 435 GAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 435 ~~~p~~~~~~~l~~~~~ 451 (493)
+.|+..+...++..+.
T Consensus 518 -l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 518 -LKPDNIFISELLKLAI 533 (611)
T ss_pred -cCCccHHHHHHHHHHH
Confidence 5787766666665444
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-11 Score=112.46 Aligned_cols=218 Identities=14% Similarity=0.156 Sum_probs=123.9
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
...|+..+|..+|.-|+..|+++.|- +|..|.-++.+.+...++.++....+.++.+.+. .|.+.+|.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 45688899999999999999999999 8888877666666666666666555555554443 35555666
Q ss_pred HHHHHHhccCChhhHH---HHHHHHH------------------------------------------HHHHHHHHHHHh
Q 043480 84 RFISGLCEVKNFTLIN---ILLDNMD------------------------------------------KLALEVFHKMVS 118 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~---~~~~~~~------------------------------------------~~a~~~~~~~~~ 118 (493)
.|+.+|...||..... +.++... +.+++++..+..
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 6666666666543211 1111111 111111111100
Q ss_pred CCCCCCHhhHHHHHHHHhccC-CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhh
Q 043480 119 KGREPDVVTYTIVIDGLCKAK-EFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLI 197 (493)
Q Consensus 119 ~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 197 (493)
... +. .+..+++-+.... .+++-..+.....+ .|+..++..++.+-...|+.+.|..++.+|.+.|++.+..-
T Consensus 168 sa~--~~-p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 168 SAW--NA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred ccc--cc-hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 000 00 0000122222211 22222233333322 46777777777777777777777777777777777766666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 043480 198 YNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCD 242 (493)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 242 (493)
|-.|+-+ .++..-+..+++-|...|+.|+..|+....-.+.+
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 6665544 66666666777777777777777776555444444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-09 Score=98.33 Aligned_cols=301 Identities=14% Similarity=0.067 Sum_probs=177.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHh
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (493)
+..-.+..+...|++++|++.++..... +.............+.+.|++++|..+|..+++.+ +.|..-|..+..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHh
Confidence 3334567788999999999999886654 34445666778899999999999999999999986 344444455555542
Q ss_pred ccCChhh-HHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHH-HHHHHHHHHHCCCCCCHHhHHHHHH
Q 043480 91 EVKNFTL-INILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDK-AVQAWEHMIENGIKPDNKACAALVV 168 (493)
Q Consensus 91 ~~~~~~~-a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~ 168 (493)
....... .. +...++++++... -|.......+.-.+.....|.. +...+..+...|+++ ++..+-.
T Consensus 84 ~~~~~~~~~~-------~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~ 151 (517)
T PF12569_consen 84 LQLQLSDEDV-------EKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKP 151 (517)
T ss_pred hhcccccccH-------HHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHH
Confidence 2221110 01 3445556655543 2322222222222222223332 334445556666542 3444555
Q ss_pred HHhccCchhHHHHHHHHHHhC--------------CCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH
Q 043480 169 GLCGDGKVDLAYELTVGAMKG--------------KVEFGVL--IYNALISGFCRTGRIRRAMAIKSFMKWNGCEPD-LV 231 (493)
Q Consensus 169 ~~~~~~~~~~a~~~~~~~~~~--------------~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~ 231 (493)
.|....+.+...+++...... .-+|+.. ++.-+...|...|++++|++++++.+.+ .|+ +.
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~e 229 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVE 229 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHH
Confidence 555444444444444443321 1133432 3345566677777777777777777766 343 55
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--Chh----h--H
Q 043480 232 TYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR--DKV----S--Y 303 (493)
Q Consensus 232 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~----~--~ 303 (493)
.|..-.+.+-+.|++.+|...++.....+ ..|...-+-.+..+.+.|+.++|.+.+......+..+ |.. . .
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 66666777777777777777777777654 2455555666677777777777777776665544222 111 1 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 043480 304 NTVIEAFCKGGQTRRAYKLFEGMRR 328 (493)
Q Consensus 304 ~~l~~~~~~~~~~~~a~~~~~~~~~ 328 (493)
.....+|.+.|++..|++.|..+.+
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3345677777777777766666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-09 Score=88.50 Aligned_cols=391 Identities=14% Similarity=0.165 Sum_probs=208.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCC
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKN 94 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 94 (493)
++.++.+.|++++|+..++.+.+.+ .++...+-.+.-.+.-.|.+.+|..+-.+..+ ++-.-..++....+.++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCc
Confidence 6778899999999999999988876 56677777777777788999999999887643 33333444444455555
Q ss_pred hhhHHHHHHHHH-------------------HHHHHHHHHHHhCCCCCCHhhHHHHH-HHHhccCCHHHHHHHHHHHHHC
Q 043480 95 FTLINILLDNMD-------------------KLALEVFHKMVSKGREPDVVTYTIVI-DGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 95 ~~~a~~~~~~~~-------------------~~a~~~~~~~~~~g~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
-++-...++... ++|++++.+... ..|+-...|..+ -+|.+..-++-+.++++-..+.
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~--dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ--DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 444444433332 789999999987 355666666555 4667778888888888887765
Q ss_pred CCCCCHH-hHHHHHHHHhc--cCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCC
Q 043480 155 GIKPDNK-ACAALVVGLCG--DGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRT-----GRIRRAMAIKSFMKWNGC 226 (493)
Q Consensus 155 ~~~~~~~-~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~ 226 (493)
-||+. +.+.......+ .|+. |..-..++.+.+.. . |- .+.-.++. ++-+.|++++-.+.+.
T Consensus 215 --~pdStiA~NLkacn~fRl~ngr~--ae~E~k~ladN~~~-~---~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~-- 283 (557)
T KOG3785|consen 215 --FPDSTIAKNLKACNLFRLINGRT--AEDEKKELADNIDQ-E---YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH-- 283 (557)
T ss_pred --CCCcHHHHHHHHHHHhhhhccch--hHHHHHHHHhcccc-c---ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--
Confidence 34543 33332222222 2332 22222233222110 0 11 11111221 2335566655544432
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC-------CHHHHHHHHHHHHHcCCCC-
Q 043480 227 EPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSN-------QLDKAYMFMVKKMEAKGLR- 298 (493)
Q Consensus 227 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~- 298 (493)
-| ..-..++-.|.+.+++.+|..+.+++.- ..|-......+. +...| ...-|...|.-.-.+...-
T Consensus 284 IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD 357 (557)
T KOG3785|consen 284 IP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECD 357 (557)
T ss_pred Ch--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccc
Confidence 12 2223344456667777777666655431 112222222221 11222 2233333333222222111
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 043480 299 DKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIID 378 (493)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 378 (493)
++..-.++...+.-..++++++-.+..+...-.. |...--.+.++++..|++.+|+++|-.+....++.+..-...+.+
T Consensus 358 TIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LAr 436 (557)
T KOG3785|consen 358 TIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLAR 436 (557)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHH
Confidence 1222344455555555666666666666554332 222233455666667777777777766655443333333345556
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 379 CLCKSREIGTAYGVFLDMVEQGITPDVI-SYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
+|.+++.++.|.+++-.+-. +.+.. ....+..-|.+.+.+=-|-+.|+.+...
T Consensus 437 Cyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 66677777666655533321 11222 2223344566666666666666666554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.8e-10 Score=102.48 Aligned_cols=439 Identities=10% Similarity=-0.019 Sum_probs=272.4
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcC-hhh
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLT-PFT 81 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~ 81 (493)
.++..|+.+|..|.-+...+|+++.+.+.|++....- -.....|+.+...+...|.-..|+.+++........|+ +..
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 4566899999999999999999999999999987653 34456788899999999999999999998776543343 333
Q ss_pred HHHHHHHHh-ccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc-----------CCHHHHHHHHH
Q 043480 82 YSRFISGLC-EVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKA-----------KEFDKAVQAWE 149 (493)
Q Consensus 82 ~~~ll~~~~-~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~ 149 (493)
+...-..|. +.+..+++. +-|.++.+......-......|..+.-+|... ....++++.++
T Consensus 396 ~Lmasklc~e~l~~~eegl-------dYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGL-------DYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred HHHHHHHHHhchhhhhhHH-------HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 333333333 345554444 22333333221111122344555555555432 22457788888
Q ss_pred HHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043480 150 HMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPD 229 (493)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 229 (493)
+.++.+. .|..+...+..-|+..++++.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+.....- ..|
T Consensus 469 ~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N 546 (799)
T KOG4162|consen 469 EAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDN 546 (799)
T ss_pred HHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhh
Confidence 8887653 25555666666677888899999988888887556788888888888888899999998888766431 111
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCChhhHHHHH
Q 043480 230 LVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEA--KGLRDKVSYNTVI 307 (493)
Q Consensus 230 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~ 307 (493)
..-...-+..-...++.+++......+... -.+...... .++-.........+.-. .+...+.++..+.
T Consensus 547 ~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q~-------~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 547 HVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQQ-------TLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred hhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHhh-------hhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 111111122222356666666655554421 000000000 01111111111111100 1111112222222
Q ss_pred HHHHHc---CCHHHHHHHHHHHHHcCCCc--C------HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 043480 308 EAFCKG---GQTRRAYKLFEGMRRRGIEL--D------VVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTI 376 (493)
Q Consensus 308 ~~~~~~---~~~~~a~~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 376 (493)
.-.... -..+.. +.+....| + ...|......+.+.++.++|...+.+..+.. +.....|...
T Consensus 618 ~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~ 690 (799)
T KOG4162|consen 618 SLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLR 690 (799)
T ss_pred HHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHh
Confidence 111111 011111 22111112 2 1234455667778889999998888887654 5666777777
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043480 377 IDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMH--LYEEMQIRGAHPDEVTFKLLIGGLVQEK 454 (493)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g 454 (493)
...+...|.+.+|.+.|....... +-++....++..++...|+..-|.. ++..+.+.+.. +...|..+...+.+.|
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLG 768 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcc
Confidence 778888899999999999888752 2245678889999999998888887 99999886543 8999999999999999
Q ss_pred CHHHHHHHHHHHHHc
Q 043480 455 KLELACRLWDQMMEK 469 (493)
Q Consensus 455 ~~~~a~~~~~~~~~~ 469 (493)
+.+.|...|..+.+.
T Consensus 769 d~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 769 DSKQAAECFQAALQL 783 (799)
T ss_pred chHHHHHHHHHHHhh
Confidence 999999999988875
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.5e-10 Score=99.62 Aligned_cols=438 Identities=12% Similarity=0.086 Sum_probs=225.9
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
++|..+.+.....-.+...|+-++|..........+ ..+.+.|..+.-.+....+|++|++.|..++..+ +.|...+.
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilr 113 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILR 113 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 344444444433344444455555555555544443 4444555555555555555666666666555543 33344444
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCHHh
Q 043480 84 RFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG-IKPDNKA 162 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~ 162 (493)
-+.-.-++.+++ +........+.+. .+.....|..++.++.-.|+...|..+.+...+.. -.|+...
T Consensus 114 DlslLQ~QmRd~-----------~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~ 181 (700)
T KOG1156|consen 114 DLSLLQIQMRDY-----------EGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKED 181 (700)
T ss_pred HHHHHHHHHHhh-----------hhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH
Confidence 333333344444 2233333344442 23345567777777777888888888888777653 2355544
Q ss_pred HHHHH------HHHhccCchhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043480 163 CAALV------VGLCGDGKVDLAYELTVGAMKGKVEFGV-LIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNA 235 (493)
Q Consensus 163 ~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 235 (493)
+.... ......|..+.|.+.+...... ..|- ..-..-...+.+.++.++|..++..+... .||..-|..
T Consensus 182 ~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~ 257 (700)
T KOG1156|consen 182 YEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYE 257 (700)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHH
Confidence 43322 3334567777777665544322 1122 22233455677788888888888888876 455554444
Q ss_pred H-HHHHH-ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHH
Q 043480 236 I-LNYYC-DEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQL-DKAYMFMVKKMEAKGLRDKVSYNTVIEAFCK 312 (493)
Q Consensus 236 l-l~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (493)
. ..++. -.+..+....+|....+. .|.......+--......++ +..-.++...++.|.+ .++..+...|-.
T Consensus 258 ~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~ 332 (700)
T KOG1156|consen 258 GLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKD 332 (700)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhc
Confidence 3 33433 223333333555554432 12111111111111111222 2223334444444332 222333332222
Q ss_pred cCCHHHHHHHHHHHH----HcC----------CCcCHh--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HhHHH
Q 043480 313 GGQTRRAYKLFEGMR----RRG----------IELDVV--TFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDR-ILYTT 375 (493)
Q Consensus 313 ~~~~~~a~~~~~~~~----~~~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 375 (493)
-...+-..++...+. ..| -+|... ++-.++..+-+.|+++.|..+++....+ .|+. ..|..
T Consensus 333 p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~ 410 (700)
T KOG1156|consen 333 PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLV 410 (700)
T ss_pred hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHH
Confidence 111111111111111 111 134433 3445667778889999999999888865 4543 45666
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--C----HHHHHHH--H
Q 043480 376 IIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP--D----EVTFKLL--I 447 (493)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~----~~~~~~l--~ 447 (493)
=.+.+...|++++|...+.+..+.. .||...-..-..-..++++.++|.++....-+.|... | .-.|..+ .
T Consensus 411 KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g 489 (700)
T KOG1156|consen 411 KARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDG 489 (700)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhh
Confidence 6677888899999999998888763 4454443355556677888889988888886665311 1 1122222 3
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 043480 448 GGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~ 467 (493)
.+|.+.|++-.|++-+....
T Consensus 490 ~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 490 EAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 56777777666655544443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-09 Score=95.44 Aligned_cols=445 Identities=13% Similarity=0.085 Sum_probs=245.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
.-+-++.+...|++++|.+...+++..+ |.+...+..=+-++++.++|++|+.+.+.-.... ..+.+.| .-.-+..+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~f-EKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFF-EKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhH-HHHHHHHH
Confidence 3345778899999999999999999987 7778888888889999999999997665533211 1111111 11233446
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH--HhHHHHHHH
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN--KACAALVVG 169 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~ 169 (493)
.+.. +.|+..++-. .+.+..+...-...+.+.|++++|+.+|..+.+.+.. +. ..-..++..
T Consensus 92 lnk~-----------Dealk~~~~~----~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 92 LNKL-----------DEALKTLKGL----DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAV 155 (652)
T ss_pred cccH-----------HHHHHHHhcc----cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHH
Confidence 6777 5555555522 2223447777788899999999999999999887532 22 112222211
Q ss_pred HhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCHH-HHHH
Q 043480 170 LCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNG-------------CEPDLV-TYNA 235 (493)
Q Consensus 170 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~-~~~~ 235 (493)
-. .-.+. +.+...... ..+-..+-.....++..|++.+|+++++...+.+ +.-... .-..
T Consensus 156 ~a----~l~~~-~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQ 229 (652)
T KOG2376|consen 156 AA----ALQVQ-LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQ 229 (652)
T ss_pred HH----hhhHH-HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence 11 11111 122222111 1122222234456778899999999998883211 000111 1223
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCChhh----HHHHHHHHHccCCHH-HHHHHHHHHHHc-----------CCCCC
Q 043480 236 ILNYYCDEVMLDEAEKLVMEMESCGIEPDVYS----YNQLLKGLCNSNQLD-KAYMFMVKKMEA-----------KGLRD 299 (493)
Q Consensus 236 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~-~a~~~~~~~~~~-----------~~~~~ 299 (493)
+.-.+...|+-.+|..++....+... +|... -|.++.+-....-++ .++..++..... .....
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~ 308 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA 308 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44456678999999999999887653 33322 222222111111111 111111111110 00001
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHH-H-cCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 043480 300 KVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFL-R-EGSSAMAEKLLNQMRGMNLSPDRILYTTII 377 (493)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 377 (493)
...-+.++..|. +..+.+.++...... ..|. ..+..++..+. . ...+..+..++...-+........+.-..+
T Consensus 309 i~~N~~lL~l~t--nk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~a 383 (652)
T KOG2376|consen 309 IYRNNALLALFT--NKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRA 383 (652)
T ss_pred HHHHHHHHHHHh--hhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHH
Confidence 111112222222 223333333332221 1222 23333333332 2 224667777777666543222244555666
Q ss_pred HHHHccCCHhHHHHHHH--------HHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHH----H
Q 043480 378 DCLCKSREIGTAYGVFL--------DMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR--GAHPDEVT----F 443 (493)
Q Consensus 378 ~~~~~~~~~~~a~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~----~ 443 (493)
......|+++.|..++. .+.+.+..| .+...+...+.+.++.+.|..++...... .-.+.... +
T Consensus 384 Ql~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~ 461 (652)
T KOG2376|consen 384 QLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLM 461 (652)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHH
Confidence 67778888888888888 555554444 34455666677777777777777766431 01122222 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhchh
Q 043480 444 KLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDA 490 (493)
Q Consensus 444 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 490 (493)
..+...-.+.|+-++|..+++++.+. .++|..+...++.+|++.+.
T Consensus 462 ~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 462 REAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred HHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcCH
Confidence 33334445678888888888888874 36788888888888887654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.9e-09 Score=93.24 Aligned_cols=436 Identities=11% Similarity=0.058 Sum_probs=288.7
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGL 89 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 89 (493)
..+..-+.-+...+++..-+++.+.+++.. +-...+.-..+-.+...|+.++|....+..+... ..+.++|..+.-.+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHH
Confidence 333333444556789999999999998854 5555666555566777899999999999887754 56677899888888
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 043480 90 CEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVG 169 (493)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (493)
....++ ++|++.+...... .+.|...|.-+.-.-++.|+++.......++.+.. +.....|..+..+
T Consensus 86 R~dK~Y-----------~eaiKcy~nAl~~-~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs 152 (700)
T KOG1156|consen 86 RSDKKY-----------DEAIKCYRNALKI-EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVA 152 (700)
T ss_pred hhhhhH-----------HHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHH
Confidence 888888 6677888888775 34467778777777788899999988888888752 2345678888888
Q ss_pred HhccCchhHHHHHHHHHHhCC-CCCChhhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHH
Q 043480 170 LCGDGKVDLAYELTVGAMKGK-VEFGVLIYNALI------SGFCRTGRIRRAMAIKSFMKWNGCEPDLVT-YNAILNYYC 241 (493)
Q Consensus 170 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~ 241 (493)
+.-.|+...|..+++...... ..|+...+.... ....+.|..+.|++.+..-... ..|-.. -..-...+.
T Consensus 153 ~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~ 230 (700)
T KOG1156|consen 153 QHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLM 230 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHH
Confidence 999999999999998887754 346666555433 3345677788888776655432 222222 234456677
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhHHHHH-HHHHccCCHHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHH
Q 043480 242 DEVMLDEAEKLVMEMESCGIEPDVYSYNQLL-KGLCNSNQLDKAY-MFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRA 319 (493)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 319 (493)
+.+++++|..++..+.... ||...|...+ .++.+-.+..++. .+|....+..+..... -..-++......-.+..
T Consensus 231 kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p-~Rlplsvl~~eel~~~v 307 (700)
T KOG1156|consen 231 KLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP-RRLPLSVLNGEELKEIV 307 (700)
T ss_pred HHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc-hhccHHHhCcchhHHHH
Confidence 8999999999999998764 6666665554 4443444444444 4454444432221111 11111111112233445
Q ss_pred HHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHH----HHHHhCC----------CCCCHHhHH--HHHHHHHcc
Q 043480 320 YKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLL----NQMRGMN----------LSPDRILYT--TIIDCLCKS 383 (493)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~----------~~~~~~~~~--~l~~~~~~~ 383 (493)
-+++..+.+.|+++-...+.++-. .....+-..++. ..+...| -+|+...|+ .++..+-..
T Consensus 308 dkyL~~~l~Kg~p~vf~dl~SLyk---~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~ 384 (700)
T KOG1156|consen 308 DKYLRPLLSKGVPSVFKDLRSLYK---DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKL 384 (700)
T ss_pred HHHHHHHhhcCCCchhhhhHHHHh---chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHc
Confidence 566677777777654333333322 111111111111 1111111 156665554 466777889
Q ss_pred CCHhHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043480 384 REIGTAYGVFLDMVEQGITPDV-ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRL 462 (493)
Q Consensus 384 ~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 462 (493)
|+++.|...++..+++ .|+. ..|..=.+.+...|+.++|..++++..+.+. ||...-..-..-..+..+.++|.++
T Consensus 385 g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 385 GDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEV 461 (700)
T ss_pred ccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHH
Confidence 9999999999999986 6664 3455556888999999999999999988643 3655555677778889999999999
Q ss_pred HHHHHHcCC
Q 043480 463 WDQMMEKGF 471 (493)
Q Consensus 463 ~~~~~~~~~ 471 (493)
.....+.|.
T Consensus 462 ~skFTr~~~ 470 (700)
T KOG1156|consen 462 LSKFTREGF 470 (700)
T ss_pred HHHhhhccc
Confidence 999988875
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-08 Score=90.59 Aligned_cols=454 Identities=11% Similarity=0.069 Sum_probs=219.3
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH---hcC-ChhHHHHHHHHhccCCC---C
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLI---RHS-RFDLVQFYYQQMHPLGF---S 76 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~-~~~~a~~~~~~~~~~~~---~ 76 (493)
+.|-+.-.|-..|..-.. .-..+-.-+|+++.+. +|-+...|...+..-. ++. -.+.+...++...++.+ .
T Consensus 22 Rnp~svk~W~RYIe~k~~-sp~k~~~~lYERal~~-lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mH 99 (835)
T KOG2047|consen 22 RNPFSVKCWLRYIEHKAG-SPDKQRNLLYERALKE-LPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMH 99 (835)
T ss_pred cCchhHHHHHHHHHHHcc-CChHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHh
Confidence 445555556555554333 3334455677777776 4777777777774322 111 12333333333333221 1
Q ss_pred cChhhHHHHHHHHhccCChhhHHHHHHHHH-------------------------HHHHHHHHHHHhCCCCCCHhhHHHH
Q 043480 77 LTPFTYSRFISGLCEVKNFTLINILLDNMD-------------------------KLALEVFHKMVSKGREPDVVTYTIV 131 (493)
Q Consensus 77 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------------------------~~a~~~~~~~~~~g~~~~~~~~~~l 131 (493)
.-+..|...++.+..+++....+..++..+ +-+..++++.++ .++..-+-.
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eey 175 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEY 175 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHH
Confidence 334567777777888888865555554433 233334443322 122223334
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCC------CCCCHHhHHHHHHHHhccCch---hHHHHHHHHHHhCCCCCChhhHHHHH
Q 043480 132 IDGLCKAKEFDKAVQAWEHMIENG------IKPDNKACAALVVGLCGDGKV---DLAYELTVGAMKGKVEFGVLIYNALI 202 (493)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~ 202 (493)
+..+.+.+++++|-+.+...+... .+.+...|..+.....+.-+. -....+++.....-...--..|+.|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 444444445555444444443210 112223333333322222111 11122222222211111123677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----------------C------ChHHHHHHHHHHHHCC
Q 043480 203 SGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDE----------------V------MLDEAEKLVMEMESCG 260 (493)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------~------~~~~a~~~~~~~~~~~ 260 (493)
.-|.+.|.+++|..+|++..+. .....-|..+.++|+.- + +++-...-|+.+....
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 8888888888888888887765 23333344444443321 1 1111222222222111
Q ss_pred -----------CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHHHcCCHHHHHHHHH
Q 043480 261 -----------IEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR-----DKVSYNTVIEAFCKGGQTRRAYKLFE 324 (493)
Q Consensus 261 -----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~ 324 (493)
-+.+...|..-+. ...|+..+-...+.++...-.+. ....|..+...|-..|+.+.|..+|+
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1122222322222 22455555566666665532111 22346677777788888888888888
Q ss_pred HHHHcCCCcC---HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----------------CCHHhHHHHHHHHHccC
Q 043480 325 GMRRRGIELD---VVTFTILIKAFLREGSSAMAEKLLNQMRGMNLS-----------------PDRILYTTIIDCLCKSR 384 (493)
Q Consensus 325 ~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~ 384 (493)
+..+...+-- ..+|..-...-.+..+++.|.++++......-. .+...|+..++..-..|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 8776533211 223334444445567777787777766432111 12335666666666677
Q ss_pred CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh---cCCHHHHH
Q 043480 385 EIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD-EVTFKLLIGGLVQ---EKKLELAC 460 (493)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g~~~~a~ 460 (493)
-++....+|+++++..+. ++.........+-.+.-++++.+++++-+..=..|+ ...|+..+..+.+ ..+.+.|.
T Consensus 492 tfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 778888888887765433 222222222233344455666666655544312222 3344444444333 12456666
Q ss_pred HHHHHHHH
Q 043480 461 RLWDQMME 468 (493)
Q Consensus 461 ~~~~~~~~ 468 (493)
.+|+++++
T Consensus 571 dLFEqaL~ 578 (835)
T KOG2047|consen 571 DLFEQALD 578 (835)
T ss_pred HHHHHHHh
Confidence 66666665
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-08 Score=86.80 Aligned_cols=270 Identities=12% Similarity=0.021 Sum_probs=155.8
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHH
Q 043480 191 VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQ 270 (493)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 270 (493)
++-|+.....+...+...|+..+|...|++....+ +-+........-.+...|+++....+...+.... ..+...|-.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 34566666677777777777777777777666442 1122222222233445666666666666655421 122222333
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCC
Q 043480 271 LLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGS 350 (493)
Q Consensus 271 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 350 (493)
-+.......++..|+.+-.+.++..+. +...+-.-...+...+++++|.-.|+...... +-+...|.-++..|...|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 333344556677777776666665433 44444444556666677777777777666542 2356677777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHH-HHHHc-cCCHhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChhHHHHH
Q 043480 351 SAMAEKLLNQMRGMNLSPDRILYTTII-DCLCK-SREIGTAYGVFLDMVEQGITPD-VISYNALINGLCKSSRVSEAMHL 427 (493)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 427 (493)
+.+|...-+...+.- +.+..+.+.+. ..+.- ..--++|..+++..+.. .|+ ....+.+...|...|..+.++.+
T Consensus 384 ~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHH
Confidence 777766655554421 34455554442 22222 22345666666666653 343 23455566666677777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 428 YEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 428 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
+++... ..||....+.|.+.+...+.+.+|...|..+++.
T Consensus 461 Le~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 461 LEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 777655 3567777777777777777777777777777653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-11 Score=102.44 Aligned_cols=200 Identities=10% Similarity=0.026 Sum_probs=121.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 043480 44 SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREP 123 (493)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~ 123 (493)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++ +.|.+.+++.... .+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~-----------~~A~~~~~~al~~-~~~ 97 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGEL-----------EKAEDSFRRALTL-NPN 97 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHhh-CCC
Confidence 4455566666666666666666666665543 33445556666666666666 4444555554443 233
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHH
Q 043480 124 DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIK-PDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALI 202 (493)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 202 (493)
+...+..+...+...|++++|.+.+++....... .....+..+...+...|++++|...+....... +.+...+..+.
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la 176 (234)
T TIGR02521 98 NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELA 176 (234)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHH
Confidence 4455666666666677777777777666653211 123455556666667777777777777666543 23445566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 043480 203 SGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMES 258 (493)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (493)
..+...|++++|...+++..... +.+...+..+...+...|+.++|..+.+.+..
T Consensus 177 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 177 ELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777777777777766552 44555555666666677777777777666554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9e-11 Score=111.55 Aligned_cols=278 Identities=8% Similarity=-0.031 Sum_probs=186.1
Q ss_pred CCChhhHHHHHHHHHh-----cCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHH
Q 043480 41 RVFSIDYNRFIGVLIR-----HSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHK 115 (493)
Q Consensus 41 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~ 115 (493)
+.+...|...+++... .+++++|..+|++.++.. +.+...|..+..++...+...... -....+.|...+++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~--~~~~~~~A~~~~~~ 329 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFD--KQNAMIKAKEHAIK 329 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcc--cchHHHHHHHHHHH
Confidence 5666767666665322 234679999999998874 334556666655554322100000 00001678888888
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCCh
Q 043480 116 MVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGV 195 (493)
Q Consensus 116 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 195 (493)
.++. .+.+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...++...+.... +.
T Consensus 330 Al~l-dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 330 ATEL-DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HHhc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 8886 34467788888889999999999999999999874 335677888899999999999999999999987522 33
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 043480 196 LIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGL 275 (493)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (493)
..+..++..+...|++++|...++++.....+.++..+..+..++...|+.++|...++++.... +.+....+.+...|
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~ 485 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEY 485 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHH
Confidence 33444455566789999999999998765423345557777888889999999999998876532 22333445555666
Q ss_pred HccCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043480 276 CNSNQLDKAYMFMVKKMEAKGL-RDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRG 330 (493)
Q Consensus 276 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 330 (493)
...| +.+...++.+.+.... +....+ .-..+.-.|+.+.+..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7777 4777767666553222 111222 33445556777766655 7777653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8e-11 Score=111.89 Aligned_cols=251 Identities=11% Similarity=0.029 Sum_probs=175.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 043480 209 GRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYC---------DEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSN 279 (493)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 279 (493)
+.+++|...|++..+.. +.+...|..+..++. ..+++++|...+++..+.+ +.+...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 45789999999988763 334555555554433 2345789999999988764 446777778888888899
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 043480 280 QLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLN 359 (493)
Q Consensus 280 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 359 (493)
++++|...++++....+. +...+..+...+...|++++|...+++..+.++. +...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999999887654 6667888888899999999999999999887443 22233344445667889999999998
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCC
Q 043480 360 QMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD-VISYNALINGLCKSSRVSEAMHLYEEMQIR-GAH 437 (493)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~ 437 (493)
++.+...+.++..+..+..++...|++++|...+.++... .|+ ....+.+...|...| +.|...++.+.+. .-.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 8876542334556777888888999999999999887654 333 334455556667667 4777777776542 112
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043480 438 PDEVTFKLLIGGLVQEKKLELACRLWDQMMEKG 470 (493)
Q Consensus 438 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 470 (493)
|....+ +-..+.-.|+.+.+..+ +++.+.|
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 222222 44456666776666655 7776653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-11 Score=101.64 Aligned_cols=229 Identities=9% Similarity=-0.018 Sum_probs=135.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhcc
Q 043480 13 RAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEV 92 (493)
Q Consensus 13 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 92 (493)
+.+..+|.+.|.+.+|.+.|+..++. .|-+.+|..+..+|.+..+...|+.++.+-++.- +.++....-..+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 34566667777777777776666653 3555666666667777777777777766665541 22333233334444444
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc
Q 043480 93 KNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCG 172 (493)
Q Consensus 93 ~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (493)
++. +.|.++++...+. .+.++.+...+...|.-.++++-|+..|+++++.|+. +...|+.+.-+|.-
T Consensus 304 ~~~-----------~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~y 370 (478)
T KOG1129|consen 304 EQQ-----------EDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLY 370 (478)
T ss_pred HhH-----------HHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHh
Confidence 444 4455555555554 3445555555556666666677777777777666654 56666666666666
Q ss_pred cCchhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 043480 173 DGKVDLAYELTVGAMKGKVEF--GVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAE 250 (493)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 250 (493)
.+++|-++..|.........| -..+|-.+.......|++..|.+.|+....++ ..+...++.+.-.-.+.|++++|.
T Consensus 371 aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 371 AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHH
Confidence 666666666666665433222 23455555555666666666666666666543 344556666665566666666666
Q ss_pred HHHHHHHH
Q 043480 251 KLVMEMES 258 (493)
Q Consensus 251 ~~~~~~~~ 258 (493)
.++....+
T Consensus 450 sll~~A~s 457 (478)
T KOG1129|consen 450 SLLNAAKS 457 (478)
T ss_pred HHHHHhhh
Confidence 66666554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-10 Score=98.36 Aligned_cols=200 Identities=15% Similarity=0.020 Sum_probs=141.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHH
Q 043480 265 VYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKA 344 (493)
Q Consensus 265 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (493)
...+..+...+...|++++|...+.+.....+. +...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 345556666677777777777777776655432 455666667777777777777777777766532 245566667777
Q ss_pred HHHcCCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 043480 345 FLREGSSAMAEKLLNQMRGMNL-SPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSE 423 (493)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 423 (493)
+...|++++|...++...+... +.....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 7778888888888877765321 2234556667777888888888888888887653 3345677778888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 424 AMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 424 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888888765 233567777777888888888888888777754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-11 Score=113.73 Aligned_cols=275 Identities=13% Similarity=0.103 Sum_probs=173.9
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCC
Q 043480 111 EVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGK 190 (493)
Q Consensus 111 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 190 (493)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45556666677777777777777777777777776 7777766655556666667766666666655544
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-CCCCCChhhHH
Q 043480 191 VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMES-CGIEPDVYSYN 269 (493)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ 269 (493)
.|...+|..|..+|...|+... |+...+ -...+...+...|.-.....++..+.- .+.-||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~--- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE--- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---
Confidence 4566677777777777777554 222221 122233444555555555555444321 12223332
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcC
Q 043480 270 QLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREG 349 (493)
Q Consensus 270 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 349 (493)
..+....-.|.++.+++++..+....-. .+... .++-+.. ......++........-.|++.+|..++.+-...|
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcC
Confidence 2333344556666666665444332111 11111 1222222 22334444444433322589999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043480 350 SSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR 420 (493)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (493)
+.+.|..++.+|.+.|++.+..-|..++-+ .++...+..+++.|.+.|+.|+..|+...+..+...|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999999999999998888888877765 78888899999999999999999999888887777554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-11 Score=98.87 Aligned_cols=230 Identities=13% Similarity=0.083 Sum_probs=177.9
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 043480 234 NAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKG 313 (493)
Q Consensus 234 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (493)
+.+.++|.+.|.+.+|++.++...+. .|-+.||..+-+.|.+..++..|+.++.+-.+..+. ++....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHHH
Confidence 56778888888888888888887764 466778888888888888888888888887776432 444444455666677
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHH
Q 043480 314 GQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVF 393 (493)
Q Consensus 314 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 393 (493)
++.++|.++|+...+.. +.+......+...|.-.++++.|.+.++++.+.| ..++..|..+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 88888888888888763 3366666677777777888899999999988888 477888888888888888888888888
Q ss_pred HHHHhCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 394 LDMVEQGITPD--VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 394 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
++....--.|+ ..+|-.+.......||+..|.+.|+-....+.. +...++.|.-.-.+.|+.++|..+++.+...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 88875433343 356777777788889999999999888776433 6888888888888889999999988888754
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.6e-11 Score=106.06 Aligned_cols=245 Identities=16% Similarity=0.113 Sum_probs=155.1
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhC-------CCCCChhh-HHHHHHHHHhcCChhHHHHHHHHhccC----
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQS-------NCRVFSID-YNRFIGVLIRHSRFDLVQFYYQQMHPL---- 73 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 73 (493)
|.=..+...|..+|..+|+++.|..+++...+. . -|...+ .+.+...|...+++.+|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~-hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLK-HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCcc-CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 333456677999999999999999999988765 2 233333 344778899999999999999999764
Q ss_pred -C--CCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhccCCHHHHHHHHH
Q 043480 74 -G--FSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVV-TYTIVIDGLCKAKEFDKAVQAWE 149 (493)
Q Consensus 74 -~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~ 149 (493)
| .+.-..+++.|..+|.+.|++.+|...+ +.|.++++..... ..|.+. .++.+...+...+++++|..++.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~----e~Al~I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q 349 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYC----ERALEIYEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQ 349 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHH----HHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 2 1222457788888999999999999888 5677777774332 333333 46667788889999999999998
Q ss_pred HHHHC---CCCCC----HHhHHHHHHHHhccCchhHHHHHHHHHHhCC-------CCCChhhHHHHHHHHHhcCCHHHHH
Q 043480 150 HMIEN---GIKPD----NKACAALVVGLCGDGKVDLAYELTVGAMKGK-------VEFGVLIYNALISGFCRTGRIRRAM 215 (493)
Q Consensus 150 ~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~ 215 (493)
+..+. -+.++ ..+++.+...|...|++++|.+++.+++... ..-.-..++.+...|.+.++.++|.
T Consensus 350 ~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 350 KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 76542 11122 2456666666666777777766666655311 1111223445555555555555555
Q ss_pred HHHHHHHHC----C--CCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 043480 216 AIKSFMKWN----G--CEPDLVTYNAILNYYCDEVMLDEAEKLVMEM 256 (493)
Q Consensus 216 ~~~~~~~~~----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 256 (493)
++|.+...- | .+-...+|..|...|...|+++.|+++.+..
T Consensus 430 ~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 430 QLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 555443221 1 1112234455555555555555555554443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.8e-09 Score=97.07 Aligned_cols=292 Identities=9% Similarity=0.054 Sum_probs=205.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---
Q 043480 132 IDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRT--- 208 (493)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 208 (493)
...+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.+ +.+..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 34567889999999999776554 33344556677888899999999999999999986 44556666666665222
Q ss_pred --CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHH
Q 043480 209 --GRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVML-DEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAY 285 (493)
Q Consensus 209 --~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 285 (493)
...+...++|+++... -|.......+.-.+.....+ ..+...+..+...|+| .+|+.+-..|.......-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 2567788899988765 34444333333223222233 2455566677777764 35666666666555555555
Q ss_pred HHHHHHHHcC--------------CCCCh--hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcC
Q 043480 286 MFMVKKMEAK--------------GLRDK--VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREG 349 (493)
Q Consensus 286 ~~~~~~~~~~--------------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 349 (493)
.++....... ..|.. .++..+.+.|...|++++|++.+++.+...+ ..+..|..-...+-+.|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHCC
Confidence 5555544321 11222 2456677888899999999999999998732 24677888889999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhh------H--HHHHHHHHhcCCh
Q 043480 350 SSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVIS------Y--NALINGLCKSSRV 421 (493)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~------~--~~l~~~~~~~g~~ 421 (493)
++.+|.+.++..++.+ .-|..+-+..+..+.++|++++|..++......+..|.... | .....+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999877 56777778888888999999999999999987654333221 1 3446788899999
Q ss_pred hHHHHHHHHHH
Q 043480 422 SEAMHLYEEMQ 432 (493)
Q Consensus 422 ~~a~~~~~~~~ 432 (493)
..|++.|....
T Consensus 322 ~~ALk~~~~v~ 332 (517)
T PF12569_consen 322 GLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHH
Confidence 99988776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-07 Score=82.87 Aligned_cols=435 Identities=9% Similarity=0.076 Sum_probs=243.0
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
|+..|.|...|+.|++-+..+ .++++++.++++... .|.++..|...+....+.++++....+|.+.+.. ..+...
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDL 88 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDL 88 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhH
Confidence 678899999999999977666 999999999999876 4777889999999999999999999999999887 455666
Q ss_pred HHHHHHHHhcc-CChhhHHHHHHHHHHHHHHHHHHHH-hCCCCC-CHhhHHHHHHHH---------hccCCHHHHHHHHH
Q 043480 82 YSRFISGLCEV-KNFTLINILLDNMDKLALEVFHKMV-SKGREP-DVVTYTIVIDGL---------CKAKEFDKAVQAWE 149 (493)
Q Consensus 82 ~~~ll~~~~~~-~~~~~a~~~~~~~~~~a~~~~~~~~-~~g~~~-~~~~~~~l~~~~---------~~~~~~~~a~~~~~ 149 (493)
|...+.--.+. ++....+. .-.+.|+-.. +.|..+ +-..|+..+..+ ..+.+.+...++|.
T Consensus 89 W~lYl~YVR~~~~~~~~~r~-------~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYq 161 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYRE-------KMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQ 161 (656)
T ss_pred HHHHHHHHHHHccCcchHHH-------HHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHH
Confidence 77766544432 33333221 1122233222 223333 233455555432 23445667777787
Q ss_pred HHHHCCCCCCHHhHHH------HHHHH-------hccCchhHHHHHHHHHHh--CCCCCChhhHHHHHHHHHhcCCHHHH
Q 043480 150 HMIENGIKPDNKACAA------LVVGL-------CGDGKVDLAYELTVGAMK--GKVEFGVLIYNALISGFCRTGRIRRA 214 (493)
Q Consensus 150 ~~~~~~~~~~~~~~~~------l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a 214 (493)
++....+..=...|.. =++.. -+...+..|.++++++.. .|+.....+ .-..|-.++.
T Consensus 162 ral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~ 234 (656)
T KOG1914|consen 162 RALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEI 234 (656)
T ss_pred HHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHH
Confidence 7776422111111111 11100 011223333333333321 111111100 0000111111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccC------Ch--HHHHHHHHHH-HHCCCCCChhhH-H----HHHHHHHccCC
Q 043480 215 MAIKSFMKWNGCEPDLVTYNAILNYYCDEV------ML--DEAEKLVMEM-ESCGIEPDVYSY-N----QLLKGLCNSNQ 280 (493)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------~~--~~a~~~~~~~-~~~~~~~~~~~~-~----~l~~~~~~~~~ 280 (493)
.++ ..|..+|.-=-..+ .. ....-.+++. .-.+..|+.... . ..-+.+...|+
T Consensus 235 ~qv-------------~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d 301 (656)
T KOG1914|consen 235 QQV-------------ELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGD 301 (656)
T ss_pred HHH-------------HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcc
Confidence 100 00111111100000 00 0011111111 111111111000 0 00112222332
Q ss_pred -------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCC
Q 043480 281 -------LDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKG---GQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGS 350 (493)
Q Consensus 281 -------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 350 (493)
-+++..+++..+......+...|..+...--.. ...+.....++++...-..--..+|...+....+...
T Consensus 302 ~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eG 381 (656)
T KOG1914|consen 302 VPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEG 381 (656)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhh
Confidence 345555555555433322333333333211111 1355566666666654222233567778888888888
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 043480 351 SAMAEKLLNQMRGMNLSP-DRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYE 429 (493)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (493)
...|..+|.+..+.+..+ ++.++++++..|+ .++...|..+|+--+++ +..++.--...+.-+...++-..+..+|+
T Consensus 382 lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFE 459 (656)
T KOG1914|consen 382 LKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFE 459 (656)
T ss_pred HHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHH
Confidence 999999999999876555 6677788887766 57889999999886654 23344445677788888899999999999
Q ss_pred HHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 430 EMQIRGAHPD--EVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 430 ~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
+....++.|+ ..+|..++.--..-|+...+.++-+++...
T Consensus 460 r~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 460 RVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9988766664 688999999989999999999988887663
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.2e-10 Score=102.01 Aligned_cols=248 Identities=16% Similarity=0.090 Sum_probs=164.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhccC-----C-CCcCh-hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHH
Q 043480 41 RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL-----G-FSLTP-FTYSRFISGLCEVKNFTLINILLDNMDKLALEVF 113 (493)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~ 113 (493)
|.-..+...+...|...|+++.|..++++.++. | ..|.. ...+.+...|...+++.+|..++ +.|+.++
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly----~~AL~i~ 271 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLY----EEALTIR 271 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHH----HHHHHHH
Confidence 333455666889999999999999999998875 1 12333 23445777889999999998888 5667777
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC-----CC-CCCH-HhHHHHHHHHhccCchhHHHHHHHHH
Q 043480 114 HKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN-----GI-KPDN-KACAALVVGLCGDGKVDLAYELTVGA 186 (493)
Q Consensus 114 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 186 (493)
+.......+.-..+++.|..+|.+.|++++|...+++..+- |. .|.. ..++.+...+...+++++|..+++..
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 77765533444568899999999999999999988876542 11 1222 34556677778888888888877765
Q ss_pred HhCC---CC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHccCChHHHHHH
Q 043480 187 MKGK---VE----FGVLIYNALISGFCRTGRIRRAMAIKSFMKWNG-------CEPDLVTYNAILNYYCDEVMLDEAEKL 252 (493)
Q Consensus 187 ~~~~---~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~ 252 (493)
.+.- +. -...+++.|...|.+.|++++|.+++++..... ..-....++.+...|.+.+.+.+|.++
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l 431 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQL 431 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHH
Confidence 5411 11 123467777777777888877777777765421 111134456666677777777777777
Q ss_pred HHHHHH----CC--CCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 043480 253 VMEMES----CG--IEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKM 292 (493)
Q Consensus 253 ~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 292 (493)
|.+... .| .+....+|..|...|.+.|+++.|.++.....
T Consensus 432 ~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 432 FEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 766432 12 12223456666666666777766666655544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.9e-08 Score=88.11 Aligned_cols=371 Identities=12% Similarity=0.052 Sum_probs=237.0
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCC-C
Q 043480 116 MVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEF-G 194 (493)
Q Consensus 116 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~ 194 (493)
+....+..+...|..+.-+....|+++.+-+.|++....- --....|..+...+...|.-..|..+++........| +
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 3333356788888888888899999999999998877542 2366778888888888888888888888776543223 2
Q ss_pred hhhHHHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHc-----------cCChHHHHHHHHHHHH
Q 043480 195 VLIYNALISGFC-RTGRIRRAMAIKSFMKWN--GC--EPDLVTYNAILNYYCD-----------EVMLDEAEKLVMEMES 258 (493)
Q Consensus 195 ~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~-----------~~~~~~a~~~~~~~~~ 258 (493)
...+...-..|. +.+..++++.+-.+.... +. ...+..+..+.-+|.. .....++.+.+++..+
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 333333333343 346677777666666541 10 1122333333333321 1123456677777766
Q ss_pred CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC-----
Q 043480 259 CGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRR-GIE----- 332 (493)
Q Consensus 259 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~----- 332 (493)
.+ +.|+...-.+.--|...++.+.|.....+....+...+...|..+.-.+...+++.+|+.+.+..... |..
T Consensus 473 ~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 473 FD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred cC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 54 23333333344456677888888888888888766668888888888888888888888888776543 110
Q ss_pred -------------cCHhHHHHHHHHHHH-----------------------cCCHHHHHHHHHHH--------HhCC---
Q 043480 333 -------------LDVVTFTILIKAFLR-----------------------EGSSAMAEKLLNQM--------RGMN--- 365 (493)
Q Consensus 333 -------------~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~--------~~~~--- 365 (493)
-...|...++..+-. .++..++.+....+ ...+
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 001122222221110 00111111111110 0001
Q ss_pred ------CC--CC------HHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043480 366 ------LS--PD------RILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEM 431 (493)
Q Consensus 366 ------~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 431 (493)
+. |+ ...|......+.+.+..++|...+.+.... .+.....|......+...|..++|.+.|...
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 01 11 124455666777788888888888887765 3445566777777888899999999999998
Q ss_pred HHcCCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHhhchhcc
Q 043480 432 QIRGAHP-DEVTFKLLIGGLVQEKKLELACR--LWDQMMEKGFTLDKTVSAALIEAIHLQDAAN 492 (493)
Q Consensus 432 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 492 (493)
... .| ++.+...+...+.+.|+...|.. ++..+++.+ +.+...|-.+-..+...|+.+
T Consensus 711 l~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 711 LAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred Hhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchH
Confidence 874 55 58889999999999999888887 999999864 456899999999999888754
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-08 Score=83.45 Aligned_cols=408 Identities=12% Similarity=0.020 Sum_probs=228.0
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC--hhHHHHHHHHhccCCCCcChhhHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSR--FDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
.+...-...+..|.-.++-+.|+..+.++.... ...--+.++..+.+.|- +++....-+-+++. +.-......
T Consensus 95 ~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrec--p~aL~~i~~ 169 (564)
T KOG1174|consen 95 GDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIREC--PMALQVIEA 169 (564)
T ss_pred ccHHHHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhc--chHHHHHHH
Confidence 344555567888888899999998887765432 11122333333333332 22222222222221 111111111
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh--ccCCHHHHHHHHHHHHHC-CCCCCHH
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLC--KAKEFDKAVQAWEHMIEN-GIKPDNK 161 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~-~~~~~~~ 161 (493)
++..-. ..+...-..|.....+|+..+....+.++. -.++...|...+-.+... -++-|..
T Consensus 170 ll~l~v----------------~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~Nvh 233 (564)
T KOG1174|consen 170 LLELGV----------------NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEH 233 (564)
T ss_pred HHHHhh----------------cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHH
Confidence 111110 111111122322223444333333333332 334444444444333222 2444666
Q ss_pred hHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043480 162 ACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYC 241 (493)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 241 (493)
....+..++...|+.++|...|++....+ +-+........-.+.+.|+.+....+...+.... ......|..-+....
T Consensus 234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 234 LMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLY 311 (564)
T ss_pred HHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhh
Confidence 77777777888888888888887776543 1122222222333456677777777666665432 233444444444555
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 043480 242 DEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYK 321 (493)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 321 (493)
...++..|..+-+...+.+ +.+...+-.-...+...++.++|.-.|+.+..-.+. +..+|.-++.+|...|.+.+|.-
T Consensus 312 ~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHH
Confidence 6677777777777766543 233334444445667778888887777777665432 66778888888888888888777
Q ss_pred HHHHHHHcCCCcCHhHHHHHH-HHHH-HcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 043480 322 LFEGMRRRGIELDVVTFTILI-KAFL-REGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQ 399 (493)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 399 (493)
+-+...+. .+.+..+.+.+. ..+. ....-++|.++++...+.. |.-....+.+...+...|..+++..++++.+..
T Consensus 390 ~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 390 LANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 66665544 334555655553 2222 2334567777777776654 334456677777778888888888888887764
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 043480 400 GITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFK 444 (493)
Q Consensus 400 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 444 (493)
.||....+.|...+...+.+.+|+..|....+.+++ |..+..
T Consensus 468 --~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~-~~~sl~ 509 (564)
T KOG1174|consen 468 --FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK-SKRTLR 509 (564)
T ss_pred --ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc-chHHHH
Confidence 677777888888888888888888888887764322 344443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.7e-12 Score=76.30 Aligned_cols=48 Identities=50% Similarity=1.019 Sum_probs=21.6
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 403 PDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGL 450 (493)
Q Consensus 403 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 450 (493)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.3e-09 Score=80.82 Aligned_cols=209 Identities=13% Similarity=-0.011 Sum_probs=165.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHH
Q 043480 267 SYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFL 346 (493)
Q Consensus 267 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (493)
+...+.-.|...|+...|..-+++.++..+. +..+|..+...|.+.|+.+.|.+-|++..+..+. +-...|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 3445666788899999999999999887654 7778888888899999999999999998876433 6677888888889
Q ss_pred HcCCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 043480 347 REGSSAMAEKLLNQMRGMN-LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAM 425 (493)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 425 (493)
..|.+++|...|+...... ......+|..+.-+..+.|+.+.|...|++.++.. +-...+...+.......|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999888632 22334678888888889999999999999998863 334566778888899999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043480 426 HLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAAL 481 (493)
Q Consensus 426 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 481 (493)
.+++.....+. ++..++...|+.-...|+.+.+.++=..+.+. -|.+.-+..+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~f 246 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQTF 246 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHhH
Confidence 99999887765 78888888899999999988888876666653 4555444443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.6e-09 Score=82.23 Aligned_cols=195 Identities=11% Similarity=-0.024 Sum_probs=102.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhH
Q 043480 49 RFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTY 128 (493)
Q Consensus 49 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 128 (493)
-+.-.|.+.|++..|..-+++.++.. +.+..+|..+...|.+.|+. +.|.+.|+..++. .+.+-...
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~-----------~~A~e~YrkAlsl-~p~~GdVL 106 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGEN-----------DLADESYRKALSL-APNNGDVL 106 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCh-----------hhHHHHHHHHHhc-CCCccchh
Confidence 34445555555555555555555543 22334455555555555555 3444444444443 23344455
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 043480 129 TIVIDGLCKAKEFDKAVQAWEHMIENGIKP-DNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCR 207 (493)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (493)
|.....+|.+|++++|...|++......-| -..++..+.-+..+.|+.+.|...|++.++.. +-.......+.....+
T Consensus 107 NNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~ 185 (250)
T COG3063 107 NNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYK 185 (250)
T ss_pred hhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHh
Confidence 555555555566666666665555432111 23455555555555666666666666555543 2233344455555566
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 043480 208 TGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMES 258 (493)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (493)
.|++-.|...++.....+ .++..+.-..|+.-...|+.+.+.+.=..+.+
T Consensus 186 ~~~y~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 186 AGDYAPARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred cccchHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 666666666666665554 35555555555555566666655555444443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-09 Score=92.98 Aligned_cols=221 Identities=14% Similarity=0.011 Sum_probs=129.6
Q ss_pred HHcCChhHHHHHHHHHhhCC---CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChh
Q 043480 20 VKAGLIDQAVHVFDEMTQSN---CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFT 96 (493)
Q Consensus 20 ~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 96 (493)
...+..+.++.-+.+++... .......|..+...+...|++++|...|++.++.. +.++..|+.+...+...|++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~- 114 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF- 114 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH-
Confidence 33456677777777777532 11123446666677777788888888777777764 44567777777777777877
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCch
Q 043480 97 LINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKV 176 (493)
Q Consensus 97 ~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (493)
+.|.+.|+...+. .+.+..+|..+...+...|++++|++.|++..+. .|+..............++.
T Consensus 115 ----------~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~ 181 (296)
T PRK11189 115 ----------DAAYEAFDSVLEL-DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDP 181 (296)
T ss_pred ----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCH
Confidence 5556666666654 2334566677777777778888888888777765 34332222222233445677
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCC---CCCHHHHHHHHHHHHccCChHHHH
Q 043480 177 DLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKW---NGC---EPDLVTYNAILNYYCDEVMLDEAE 250 (493)
Q Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~---~~~~~~~~~ll~~~~~~~~~~~a~ 250 (493)
++|...|....... .++...+ .+... ..|+...+ ..+..+.+ ..+ +.....|..+...+...|++++|.
T Consensus 182 ~~A~~~l~~~~~~~-~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 182 KQAKENLKQRYEKL-DKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred HHHHHHHHHHHhhC-CccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 77777776554322 2222211 22222 23333222 23333321 110 123356777777778888888888
Q ss_pred HHHHHHHHCC
Q 043480 251 KLVMEMESCG 260 (493)
Q Consensus 251 ~~~~~~~~~~ 260 (493)
..|++..+.+
T Consensus 257 ~~~~~Al~~~ 266 (296)
T PRK11189 257 ALFKLALANN 266 (296)
T ss_pred HHHHHHHHhC
Confidence 8888877654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-11 Score=74.50 Aligned_cols=50 Identities=32% Similarity=0.511 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 043480 438 PDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHL 487 (493)
Q Consensus 438 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 487 (493)
||..+|++++++|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.7e-07 Score=79.64 Aligned_cols=425 Identities=14% Similarity=0.103 Sum_probs=241.7
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHH----HHHHHhcCChhHHHHHHHHhccCCCCc
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRF----IGVLIRHSRFDLVQFYYQQMHPLGFSL 77 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~ 77 (493)
+...|.++.++..=+.+.++.+.+++|+++.+.-.. ..+++.. +-+..+.+..++|+..++-. . ..
T Consensus 39 l~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~-~---~~ 108 (652)
T KOG2376|consen 39 LSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYRLNKLDEALKTLKGL-D---RL 108 (652)
T ss_pred HhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHHcccHHHHHHHHhcc-c---cc
Confidence 345578888888899999999999999966554221 1122222 23445789999999999832 2 33
Q ss_pred ChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 043480 78 TPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREP-DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGI 156 (493)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 156 (493)
+..+...-.+.+.+.+++ ++|+.+++.+.+.+.+- +...-..++.+- .+... ..+.....
T Consensus 109 ~~~ll~L~AQvlYrl~~y-----------dealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~l~~-~~~q~v~~ 169 (652)
T KOG2376|consen 109 DDKLLELRAQVLYRLERY-----------DEALDIYQHLAKNNSDDQDEERRANLLAVA-------AALQV-QLLQSVPE 169 (652)
T ss_pred chHHHHHHHHHHHHHhhH-----------HHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------HhhhH-HHHHhccC
Confidence 445666667778889999 67778888886653221 111111111111 11111 01222222
Q ss_pred CCCHHhHH---HHHHHHhccCchhHHHHHHHHHHhCCC------CCC-h-------hhHHHHHHHHHhcCCHHHHHHHHH
Q 043480 157 KPDNKACA---ALVVGLCGDGKVDLAYELTVGAMKGKV------EFG-V-------LIYNALISGFCRTGRIRRAMAIKS 219 (493)
Q Consensus 157 ~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~-~-------~~~~~l~~~~~~~~~~~~a~~~~~ 219 (493)
.| ..+|. ...-.+...|++.+|++++....+.+. ..+ . .+-..+..++...|+.++|.++|.
T Consensus 170 v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 170 VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 33 22333 334445678889998888887732110 001 1 122345666778899999999999
Q ss_pred HHHHCCCCCCHHHH----HHHHHHHHccCChH-HHHHHHHHHHHCC-------C--CCChhhH--HHHHHHHHccCCHHH
Q 043480 220 FMKWNGCEPDLVTY----NAILNYYCDEVMLD-EAEKLVMEMESCG-------I--EPDVYSY--NQLLKGLCNSNQLDK 283 (493)
Q Consensus 220 ~~~~~~~~~~~~~~----~~ll~~~~~~~~~~-~a~~~~~~~~~~~-------~--~~~~~~~--~~l~~~~~~~~~~~~ 283 (493)
...+.. ++|.... |.++..-....-++ .++..++...... + ..-...+ +.++.+| .+..+.
T Consensus 249 ~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q 325 (652)
T KOG2376|consen 249 DIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQ 325 (652)
T ss_pred HHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHH
Confidence 998876 4554322 33332211111111 1111222111000 0 0001111 2223333 334444
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHH--
Q 043480 284 AYMFMVKKMEAKGLRDKVSYNTVIEAFCK--GGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLN-- 359 (493)
Q Consensus 284 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-- 359 (493)
+.+........ .....+..++....+ ...+..+.+++...-+....-.....-.++......|+++.|.+++.
T Consensus 326 ~r~~~a~lp~~---~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 326 VRELSASLPGM---SPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHhCCcc---CchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44433222211 123344444444332 23577788888877766444345566677777888999999999998
Q ss_pred ------HHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhC--CCCCCHh----hHHHHHHHHHhcCChhHHHHH
Q 043480 360 ------QMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQ--GITPDVI----SYNALINGLCKSSRVSEAMHL 427 (493)
Q Consensus 360 ------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~----~~~~l~~~~~~~g~~~~a~~~ 427 (493)
.+.+.+ ..+.+...++..+.+.++.+.|.+++.+.+.. .-.+... ++..+...-.+.|+-++|..+
T Consensus 403 ~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 403 LESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred hhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 444443 34456667777788888877788887777632 0011222 333334444578999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 428 YEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQM 466 (493)
Q Consensus 428 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 466 (493)
++++.+.+ ++|..+...++.+|++. |.+.|..+-+.+
T Consensus 481 leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 481 LEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99998863 44888889999998886 577777765554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.5e-08 Score=87.74 Aligned_cols=207 Identities=14% Similarity=-0.024 Sum_probs=139.5
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHH---HHHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYN---RFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
.|..+..|..+...+...|+.+.|.+.+.+..+.. +.+..... .....+...|++++|...+++..+.. +.+...
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a 79 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLA 79 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHH
Confidence 46778888899999999999999888888877654 33333222 22345678899999999999988764 334434
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 043480 82 YSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPD-VVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN 160 (493)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 160 (493)
+.. ...+...++..... ..+.+.++.. ....|+ ......+...+...|++++|.+.+++..+.. +.+.
T Consensus 80 ~~~-~~~~~~~~~~~~~~-------~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~ 148 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMR-------DHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDA 148 (355)
T ss_pred HHH-hHHHHHhcccccCc-------hhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 332 22222333322111 3333444332 112333 3445556678889999999999999999864 3355
Q ss_pred HhHHHHHHHHhccCchhHHHHHHHHHHhCCCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043480 161 KACAALVVGLCGDGKVDLAYELTVGAMKGKVE-FGV--LIYNALISGFCRTGRIRRAMAIKSFMKWN 224 (493)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (493)
..+..+...+...|++++|...+++....... ++. ..|..+...+...|++++|..++++....
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 67778888889999999999999988875321 222 24556778888999999999999887643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-08 Score=88.18 Aligned_cols=223 Identities=13% Similarity=-0.001 Sum_probs=155.2
Q ss_pred HhcCChhHHHHHHHHhccCC-CCc--ChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 043480 55 IRHSRFDLVQFYYQQMHPLG-FSL--TPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIV 131 (493)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 131 (493)
...+..+.++.-+.+++... ..| ....|..+...+...|++ +.|...|++..+. .+.+...|+.+
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~-----------~~A~~~~~~Al~l-~P~~~~a~~~l 104 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLR-----------ALARNDFSQALAL-RPDMADAYNYL 104 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHc-CCCCHHHHHHH
Confidence 33456677888887887643 122 235577778888899999 6666778877775 34568899999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 043480 132 IDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRI 211 (493)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 211 (493)
...+...|++++|.+.|++..+.. +-+..++..+..++...|++++|.+.|+...+.. |+..........+...++.
T Consensus 105 g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~ 181 (296)
T PRK11189 105 GIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDP 181 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCH
Confidence 999999999999999999999863 2246788888889999999999999999998864 3322222222334456789
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH---HCCC---CCChhhHHHHHHHHHccCCHHHHH
Q 043480 212 RRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEME---SCGI---EPDVYSYNQLLKGLCNSNQLDKAY 285 (493)
Q Consensus 212 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 285 (493)
++|...+++..... .|+...+ .+.. ...|+...+ ..+..+. +... +.....|..+...+.+.|++++|.
T Consensus 182 ~~A~~~l~~~~~~~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 182 KQAKENLKQRYEKL-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred HHHHHHHHHHHhhC-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 99999997765432 3333222 2222 234555443 2343333 1111 224568889999999999999999
Q ss_pred HHHHHHHHcCCC
Q 043480 286 MFMVKKMEAKGL 297 (493)
Q Consensus 286 ~~~~~~~~~~~~ 297 (493)
..|++.....+.
T Consensus 257 ~~~~~Al~~~~~ 268 (296)
T PRK11189 257 ALFKLALANNVY 268 (296)
T ss_pred HHHHHHHHhCCc
Confidence 999999987654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.8e-08 Score=78.34 Aligned_cols=195 Identities=14% Similarity=0.120 Sum_probs=134.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH-HHHHHh
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR-FISGLC 90 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~ 90 (493)
+.+.+..+++..++++|++++....++. +.+......+..+|-...++..|-..|+++-.. .|...-|.. -.+.+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4556666788999999999999998886 557788888899999999999999999998765 344433322 234444
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHH--HHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 043480 91 EVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVI--DGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVV 168 (493)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 168 (493)
+.+.+ ..|+.+...|.. .++...-..-+ ......+++..+..+.++....| +..+.....-
T Consensus 90 ~A~i~-----------ADALrV~~~~~D---~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gC 152 (459)
T KOG4340|consen 90 KACIY-----------ADALRVAFLLLD---NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGC 152 (459)
T ss_pred Hhccc-----------HHHHHHHHHhcC---CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchh
Confidence 55666 556666666632 12222111111 22345678888888887776533 5556666666
Q ss_pred HHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043480 169 GLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCE 227 (493)
Q Consensus 169 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (493)
...+.|+++.|.+-|+...+.+--.+...||..+ +..+.++.+.|+++..++..+|++
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 6678899999999999888755344555676554 445678889999999988887753
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-07 Score=82.37 Aligned_cols=199 Identities=13% Similarity=-0.018 Sum_probs=100.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cCH--hHHHHHHHHHH
Q 043480 270 QLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIE-LDV--VTFTILIKAFL 346 (493)
Q Consensus 270 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~ 346 (493)
.+...+...|++++|...+++.....+. +...+..+...+...|++++|...+++....... |+. ..+..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3444556666666666666666665433 4445555666666666666666666666544221 121 22334555666
Q ss_pred HcCCHHHHHHHHHHHHhCCC-CCCHHhH-H--HHHHHHHccCCHhHHHHH---HHHHHhCCC-CCCHhhHHHHHHHHHhc
Q 043480 347 REGSSAMAEKLLNQMRGMNL-SPDRILY-T--TIIDCLCKSREIGTAYGV---FLDMVEQGI-TPDVISYNALINGLCKS 418 (493)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~---~~~~~~~~~-~p~~~~~~~l~~~~~~~ 418 (493)
..|++++|..+++....... .+..... + .++.-+...|....+.+. ......... ............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 67777777777766643221 1111111 1 222222333332222221 111111100 00111112455666777
Q ss_pred CChhHHHHHHHHHHHcCCC-------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 419 SRVSEAMHLYEEMQIRGAH-------P-DEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 419 g~~~~a~~~~~~~~~~~~~-------p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
|+.+.|..+++.+....-. . ..........++...|++++|.+.+...+..
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888777542111 0 1222233334556788888888888887765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.5e-07 Score=85.01 Aligned_cols=408 Identities=12% Similarity=0.074 Sum_probs=230.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHH----------HHHHHhccC----------
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQ----------FYYQQMHPL---------- 73 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~----------~~~~~~~~~---------- 73 (493)
.|+.-.-+.+++.--+..++...+.| ..++.++|++...|..+++-.+-. .+=.-..++
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 34445566777777888888888887 778889999999888766543321 110111111
Q ss_pred -C--------CCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHhccCCHH
Q 043480 74 -G--------FSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGR--EPDVVTYTIVIDGLCKAKEFD 142 (493)
Q Consensus 74 -~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~~~~~ 142 (493)
| +......|....+.+....+.+.=.+++.+--..-..+.+..++.+. ..|+..-.....++...+-+.
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 1 00011223333333333333322222221111122344444444332 224455555667777778888
Q ss_pred HHHHHHHHHHHCCCC-CCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 143 KAVQAWEHMIENGIK-PDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFM 221 (493)
Q Consensus 143 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 221 (493)
+-++++++++-.+.. .....+..++-.-+-.-+.....+..+++...+ .| .+...+..++-+++|..+|++.
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a~------~ia~iai~~~LyEEAF~ifkkf 1074 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD-AP------DIAEIAIENQLYEEAFAIFKKF 1074 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC-ch------hHHHHHhhhhHHHHHHHHHHHh
Confidence 888888877643211 111222222222222233444555555544332 11 2345566677788888888776
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh
Q 043480 222 KWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKV 301 (493)
Q Consensus 222 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 301 (493)
. .+....+.++.- -+..+.|.++-++. ..+.+|..+..+-.+.|...+|++-|-+. .|+.
T Consensus 1075 ~-----~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dDps 1134 (1666)
T KOG0985|consen 1075 D-----MNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPS 1134 (1666)
T ss_pred c-----ccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcH
Confidence 3 344445555542 35556666555443 24567888888888888888887766443 3677
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLC 381 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (493)
.|..+++...+.|.+++-.+.+....+....|.. -+.++-+|++.++..+.++.+. -|+......+.+-|.
T Consensus 1135 ~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf 1205 (1666)
T KOG0985|consen 1135 NYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCF 1205 (1666)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHh
Confidence 7888888888888888888888877776554443 3567778888887776555431 466666667777777
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH------------------------HHHcCCC
Q 043480 382 KSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEE------------------------MQIRGAH 437 (493)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~------------------------~~~~~~~ 437 (493)
..|.++.|.-+|.... .|..|...+...|++..|...-++ |...++-
T Consensus 1206 ~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~ii 1276 (1666)
T KOG0985|consen 1206 EEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNII 1276 (1666)
T ss_pred hhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEE
Confidence 7777776666654432 244444444444444444333222 2222222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 438 PDEVTFKLLIGGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 438 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 467 (493)
....-..-|+..|...|-+++...+++..+
T Consensus 1277 vhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1277 VHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred EehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 345556667777777788887777777665
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.6e-08 Score=79.14 Aligned_cols=295 Identities=16% Similarity=0.105 Sum_probs=199.0
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHH-HHH
Q 043480 125 VVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNA-LIS 203 (493)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~ 203 (493)
.--+.+++..+.+..++.+|++++..-.++. +.+...++.+..+|....++..|-..++++... .|...-|.. -..
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 3346667777778889999999998887763 226778888889999999999999999988765 344443432 244
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH
Q 043480 204 GFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILN--YYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQL 281 (493)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 281 (493)
.+.+.+.+.+|+++...|... |+...-..-+. .....+++..+..++++.... .+..+.....-...+.|++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccH
Confidence 566788899999998888742 22222222222 223578888888888887643 2334444444455688999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-------------CHh--------HHHH
Q 043480 282 DKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIEL-------------DVV--------TFTI 340 (493)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~--------~~~~ 340 (493)
+.|.+-|....+.++-.....|+..+..| +.++.+.|++...+++++|++. |.. .-+.
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 99999999999887776777888766544 5688999999999988876541 211 1123
Q ss_pred HHH-------HHHHcCCHHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043480 341 LIK-------AFLREGSSAMAEKLLNQMRG-MNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALI 412 (493)
Q Consensus 341 l~~-------~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 412 (493)
++. .+.+.|+++.|.+.+-.|.- .....|++|...+.-. -..+++....+-+.-+++... -...||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHH
Confidence 333 34577888888888877753 2224456665544322 124555556555666665533 3457888888
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 043480 413 NGLCKSSRVSEAMHLYEEM 431 (493)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~ 431 (493)
-.||+..-++.|-.++.+-
T Consensus 318 llyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHhhhHHHhHHHHHHhhC
Confidence 8999988888888877664
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.1e-07 Score=79.89 Aligned_cols=390 Identities=14% Similarity=0.064 Sum_probs=209.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcC-hhhHHHHHHHHhccC
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLT-PFTYSRFISGLCEVK 93 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~ 93 (493)
-..+.+..|+++.|+.+|.+.+..+ |+|...|.--..+|...|+|++|++=-.+.++. .|+ +..|+....++.-.|
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcc
Confidence 3456778899999999999999987 668888999999999999999999887777665 455 467899999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHH---HHHHHHHHHCC---CCCCHHhHHHHH
Q 043480 94 NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKA---VQAWEHMIENG---IKPDNKACAALV 167 (493)
Q Consensus 94 ~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~~---~~~~~~~~~~l~ 167 (493)
++++ |+..|.+-++. .+.+...++-+..++.......+. -.++..+.... .......|..++
T Consensus 85 ~~~e-----------A~~ay~~GL~~-d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 85 DYEE-----------AILAYSEGLEK-DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred cHHH-----------HHHHHHHHhhc-CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 9954 44555555543 233444555555554111000000 00111111000 000111222222
Q ss_pred HHHhc----------cCchhHHHHHHHHHH-----hC-------CCCC----------------------ChhhHHHHHH
Q 043480 168 VGLCG----------DGKVDLAYELTVGAM-----KG-------KVEF----------------------GVLIYNALIS 203 (493)
Q Consensus 168 ~~~~~----------~~~~~~a~~~~~~~~-----~~-------~~~~----------------------~~~~~~~l~~ 203 (493)
..+-+ ..++..+.-.+..+. .. +..| -..-...+.+
T Consensus 153 ~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 153 EIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred HHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 11111 001111111110000 00 0001 0112334566
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHH-------HHHHHHH
Q 043480 204 GFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYN-------QLLKGLC 276 (493)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~ 276 (493)
...+..+++.+++-+....... -+..-++....+|...|.+..+........+.|-. ....|+ .+..+|.
T Consensus 233 aaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhh
Confidence 6666677777777777776553 34444556666677777777666666555544421 111122 2333555
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHH
Q 043480 277 NSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEK 356 (493)
Q Consensus 277 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 356 (493)
+.++++.++..|.+.+.....|+.. .+....+++.+..+...-.+... ..-...-...+.+.|++..|..
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHH
Confidence 6667777777777766544332221 12223333333333333222111 1111222445566677777777
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 357 LLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
.|.++++.. |.|...|..-.-+|.+.|.+..|+.--+..++.. ++....|..=..++....+++.|.+.|++..+.
T Consensus 380 ~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 380 HYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777776655 5666677777777777777777776666666541 222333443344455556677777777776664
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.7e-06 Score=78.83 Aligned_cols=249 Identities=9% Similarity=-0.087 Sum_probs=128.2
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCC------C
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG------F 75 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~ 75 (493)
++..|.|...|..+.++|.++|++..|+++|+++...+ |.+...-.......+..|++.+|+..+...+... .
T Consensus 589 LR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q 667 (1238)
T KOG1127|consen 589 LRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQ 667 (1238)
T ss_pred hcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678888889999999999999999999998888765 3333333334445667888888888887776531 0
Q ss_pred CcChhhHHHHHHHHhccCChhhHHHHHHHHH---------------------HH----------------HHHHHHH-HH
Q 043480 76 SLTPFTYSRFISGLCEVKNFTLINILLDNMD---------------------KL----------------ALEVFHK-MV 117 (493)
Q Consensus 76 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---------------------~~----------------a~~~~~~-~~ 117 (493)
..-..++..+...+...|=...+...+++.. .. -..+|.. ..
T Consensus 668 ~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e 747 (1238)
T KOG1127|consen 668 NGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLE 747 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 0011122222222222222222222222211 00 0111111 11
Q ss_pred hCCCC--------------------CCHhhHHHHHHHHhc-------cC-CHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 043480 118 SKGRE--------------------PDVVTYTIVIDGLCK-------AK-EFDKAVQAWEHMIENGIKPDNKACAALVVG 169 (493)
Q Consensus 118 ~~g~~--------------------~~~~~~~~l~~~~~~-------~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (493)
..+.- .+..+|..++..|.+ .+ +-..|+..+.+.++.. ..+..+|+.|...
T Consensus 748 ~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl 826 (1238)
T KOG1127|consen 748 KTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL 826 (1238)
T ss_pred hcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh
Confidence 11111 112334344433333 11 2336777777776542 2245556555544
Q ss_pred HhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 043480 170 LCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEA 249 (493)
Q Consensus 170 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 249 (493)
...|.+.-+...|-+..... +....+|..+.-.+.++.+++.|...|...+... +.+...|.-........|+.-+.
T Consensus 827 -sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~ 903 (1238)
T KOG1127|consen 827 -SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIER 903 (1238)
T ss_pred -hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHH
Confidence 55566666666665554433 4455666666666777777777777777666543 33444443333333344444444
Q ss_pred HHHHHH
Q 043480 250 EKLVME 255 (493)
Q Consensus 250 ~~~~~~ 255 (493)
..+|..
T Consensus 904 ~~lfaH 909 (1238)
T KOG1127|consen 904 LILFAH 909 (1238)
T ss_pred HHHHHh
Confidence 444443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-06 Score=71.22 Aligned_cols=302 Identities=12% Similarity=0.048 Sum_probs=189.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcCh-hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 043480 44 SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTP-FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGRE 122 (493)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~ 122 (493)
+.-..-+...+...|++..|+.-|...++.+ |+. .++-.-...|...|+. +.|+.-+.+.++ .+
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGks-----------k~al~Dl~rVle--lK 102 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKS-----------KAALQDLSRVLE--LK 102 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCC-----------ccchhhHHHHHh--cC
Confidence 3334456677778888888888888876542 332 2333344556667776 445555666655 46
Q ss_pred CCHhh-HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--HHh------------HHHHHHHHhccCchhHHHHHHHHHH
Q 043480 123 PDVVT-YTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD--NKA------------CAALVVGLCGDGKVDLAYELTVGAM 187 (493)
Q Consensus 123 ~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~ 187 (493)
||... -..-...+.+.|.+++|..=|+..+....... ... ....+..+...|+...|+.....++
T Consensus 103 pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~ll 182 (504)
T KOG0624|consen 103 PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLL 182 (504)
T ss_pred ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHH
Confidence 66432 22233467788888888888888887632111 111 1223445567788889999988888
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhh
Q 043480 188 KGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYS 267 (493)
Q Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 267 (493)
+.. +.+...|..-..+|...|++..|+.=++...+.. ..+..++-.+...+...|+.+.++...++..+.+ ||...
T Consensus 183 Ei~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~ 258 (504)
T KOG0624|consen 183 EIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKL 258 (504)
T ss_pred hcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhh
Confidence 865 6788888888899999999999988777776654 4466666677777888899999988888888743 55432
Q ss_pred H----HHH---------HHHHHccCCHHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 043480 268 Y----NQL---------LKGLCNSNQLDKAYMFMVKKMEAKGLRDKV---SYNTVIEAFCKGGQTRRAYKLFEGMRRRGI 331 (493)
Q Consensus 268 ~----~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 331 (493)
. ..+ +......+++.++++..+..++..+..... .+..+-.++...+++.+|++...+.....
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d- 337 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID- 337 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-
Confidence 1 111 112234556666666666666554432222 23334445555666667766666666541
Q ss_pred CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 043480 332 ELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN 365 (493)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 365 (493)
+.|..++.--..+|.....++.|+.-|+...+.+
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 2235566666666666666777776666666544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-05 Score=75.60 Aligned_cols=182 Identities=14% Similarity=0.133 Sum_probs=125.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccC
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVK 93 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 93 (493)
..+......|.+++|..+|.+..+.+ .+=..|...|.+++|.++-+.--+ +.. ..+|.....-+...+
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DR--iHL-r~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDR--IHL-RNTYYNYAKYLEARR 872 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccc--eeh-hhhHHHHHHHHHhhc
Confidence 34555677788889988888876533 334566778899999888765322 122 235666677777888
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhCC--------CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 043480 94 NFTLINILLDNMDKLALEVFHKMVSKG--------REPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAA 165 (493)
Q Consensus 94 ~~~~a~~~~~~~~~~a~~~~~~~~~~g--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (493)
+.+.|++.+++.-..|.++++-+.+.- ...|...|.-....+-..|+.+.|+.+|..... |..
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 999999999887767777777665420 112333444444555567888888888877654 456
Q ss_pred HHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 166 LVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
+++..|-.|+.++|-++-++.. |....-.+.+.|...|++.+|...|.+..
T Consensus 944 ~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred heeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6777788888888888766533 45555668888888888888888887765
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-06 Score=80.23 Aligned_cols=242 Identities=17% Similarity=0.187 Sum_probs=140.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccC
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVK 93 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 93 (493)
+.|+.|.+.|.+.+|.+....-.. +..|......+..++.+..-|++|-.+|+++.. | ...+.+|.+-.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d----~-----dkale~fkkgd 688 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD----F-----DKALECFKKGD 688 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----H-----HHHHHHHHccc
Confidence 457788888888888776533222 235566777777788887778888888877743 2 22233443333
Q ss_pred ChhhHHHHHHHHH-HHHHH---HHH-HHHhCCCCCC--------HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 043480 94 NFTLINILLDNMD-KLALE---VFH-KMVSKGREPD--------VVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN 160 (493)
Q Consensus 94 ~~~~a~~~~~~~~-~~a~~---~~~-~~~~~g~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 160 (493)
-+..|.++..-.. .+... .+. .+...| +.| ....-..+.+......+.+|+.+++.+.... .-.
T Consensus 689 af~kaielarfafp~evv~lee~wg~hl~~~~-q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk--~~s 765 (1636)
T KOG3616|consen 689 AFGKAIELARFAFPEEVVKLEEAWGDHLEQIG-QLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQK--TAS 765 (1636)
T ss_pred HHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH-hHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhc--ccc
Confidence 3433333222111 00000 000 000000 001 0111223445556778889999998888753 234
Q ss_pred HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043480 161 KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYY 240 (493)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 240 (493)
.-|..+...|...|+++.|.++|.+.- .++..|..|.+.|+|+.|.++-.+.. |.......|-.-..-.
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedl 834 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDL 834 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhH
Confidence 557778888999999999999886543 46778889999999999999887765 2233444455545555
Q ss_pred HccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 043480 241 CDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMV 289 (493)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 289 (493)
-..|++.+|+++|-.+. .|+ ..+.+|-+.|..+..+.+..
T Consensus 835 dehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHH
Confidence 56677777766653332 122 23445555555555544443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.5e-06 Score=74.82 Aligned_cols=370 Identities=14% Similarity=0.117 Sum_probs=235.1
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHhHHH
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD-NKACAA 165 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ 165 (493)
.+....|++ +.|+..|.+.+.. .++|...|..-..+|.+.|++++|++=-.+-++. .|+ ...|+.
T Consensus 10 naa~s~~d~-----------~~ai~~~t~ai~l-~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r 75 (539)
T KOG0548|consen 10 NAAFSSGDF-----------ETAIRLFTEAIML-SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSR 75 (539)
T ss_pred HhhcccccH-----------HHHHHHHHHHHcc-CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHH
Confidence 345567888 6778888888887 4558888999999999999999998876666664 566 478999
Q ss_pred HHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH---HHHHHHHHCC---CCCCHHHHHHHHHH
Q 043480 166 LVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAM---AIKSFMKWNG---CEPDLVTYNAILNY 239 (493)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~---~~~~~~~~~~ll~~ 239 (493)
...++...|++++|...|.+-++.. +.+...++.+..++.......+.. .++..+.... .......|..++..
T Consensus 76 ~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 76 KGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEI 154 (539)
T ss_pred hHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence 9999999999999999999998875 556667777777762211000000 0111110000 00011112222222
Q ss_pred HHc----------cCChHHHHHHHHH-----HHHCC-------CCC----------------------ChhhHHHHHHHH
Q 043480 240 YCD----------EVMLDEAEKLVME-----MESCG-------IEP----------------------DVYSYNQLLKGL 275 (493)
Q Consensus 240 ~~~----------~~~~~~a~~~~~~-----~~~~~-------~~~----------------------~~~~~~~l~~~~ 275 (493)
+-+ -..+..+...+.. ....+ ..| -..-...+.++.
T Consensus 155 ~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 155 IQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred hhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 111 0011111111110 00000 011 011234667788
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHH-------HHHHHHHHc
Q 043480 276 CNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFT-------ILIKAFLRE 348 (493)
Q Consensus 276 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~ 348 (493)
.+..+++.+.+.+...+... .+..-++....+|...|.+..+...-....+.|.. ...-|+ .+..+|.+.
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhH
Confidence 88888888888888888765 35555667777788888777777666666655432 122222 233455666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHh-------------------------HHHHHHHHHccCCHhHHHHHHHHHHhCCCCC
Q 043480 349 GSSAMAEKLLNQMRGMNLSPDRIL-------------------------YTTIIDCLCKSREIGTAYGVFLDMVEQGITP 403 (493)
Q Consensus 349 ~~~~~a~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 403 (493)
++++.+...|.+.......|+... ...-...+.+.|++..|...|.++++.. +-
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~ 390 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE 390 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence 778888888877654332333211 1112445667899999999999999875 55
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043480 404 DVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSA 479 (493)
Q Consensus 404 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 479 (493)
|...|....-+|.+.|.+..|+.-.+..++. .| ....|.-=..++....+++.|.+.|.+.++. .|+..-+.
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~ 463 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAI 463 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHH
Confidence 7889999999999999999999998888875 34 3555555566677778899999999999876 35544333
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-07 Score=84.29 Aligned_cols=254 Identities=13% Similarity=0.045 Sum_probs=187.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCC
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKN 94 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 94 (493)
...-+++.|++.+|.-.|+...+.+ |.+...|..|......+++-..|+..+++.++.. +.|..+.-.|.-.|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 4456889999999999999999997 8889999999999999999999999999999875 5566777778778887776
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCCC--------CHhhHHHHHHHHhccCCHHHHHHHHHHHH-HCCCCCCHHhHHH
Q 043480 95 FTLINILLDNMDKLALEVFHKMVSKGREP--------DVVTYTIVIDGLCKAKEFDKAVQAWEHMI-ENGIKPDNKACAA 165 (493)
Q Consensus 95 ~~~a~~~~~~~~~~a~~~~~~~~~~g~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ 165 (493)
- ..|+..++..+...++- +...-+. ..+.....+....++|-.+. ..+..+|......
T Consensus 369 q-----------~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~ 435 (579)
T KOG1125|consen 369 Q-----------NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSG 435 (579)
T ss_pred H-----------HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhh
Confidence 6 56667777765431100 0000000 12222233455666666654 4454578888889
Q ss_pred HHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccC
Q 043480 166 LVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPD-LVTYNAILNYYCDEV 244 (493)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~ 244 (493)
|...|...|.+++|.+.|+..+... +-|...||.|...++...+.++|+..|.+.++. .|+ +.+.-.|.-+|...|
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhh
Confidence 9999999999999999999999875 567889999999999999999999999999987 555 344445666788999
Q ss_pred ChHHHHHHHHHHHHCC---------CCCChhhHHHHHHHHHccCCHHHHHH
Q 043480 245 MLDEAEKLVMEMESCG---------IEPDVYSYNQLLKGLCNSNQLDKAYM 286 (493)
Q Consensus 245 ~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~ 286 (493)
.+++|...|-..+... ..++...|..|=.++.-.++.|.+..
T Consensus 513 ~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 513 AYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 9999998887654221 11234677776666666676664443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-06 Score=83.13 Aligned_cols=437 Identities=10% Similarity=-0.014 Sum_probs=202.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCC-CcChhhHHHHHHHH
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF-SLTPFTYSRFISGL 89 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~ 89 (493)
.|..|...|..-.+...|.+.|+.+-+.+ +.+...+......|++..+++.|..+.-..-+... ..-..-|..+.-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 34444444444444444555555444443 33444444444444444445444444222111100 00001111122222
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHH
Q 043480 90 CEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN-KACAALVV 168 (493)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~ 168 (493)
...++. ..+..-|+...+. .+.|...|..++.+|.+.|++..|+++|.+.... .|+. ..-.....
T Consensus 573 Lea~n~-----------h~aV~~fQsALR~-dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~ 638 (1238)
T KOG1127|consen 573 LEAHNL-----------HGAVCEFQSALRT-DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAV 638 (1238)
T ss_pred cCccch-----------hhHHHHHHHHhcC-CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHH
Confidence 333333 4566666666664 3446778888888888888888888888887764 3432 22222233
Q ss_pred HHhccCchhHHHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCCHH-------HHHHHHHHHHHCCCCCCHHHHHH
Q 043480 169 GLCGDGKVDLAYELTVGAMKGK------VEFGVLIYNALISGFCRTGRIR-------RAMAIKSFMKWNGCEPDLVTYNA 235 (493)
Q Consensus 169 ~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ 235 (493)
..+..|.+.++...+..+.... ...-..++..+...+.-.|-.. ++++.|.-...+....+...|-.
T Consensus 639 ~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~ 718 (1238)
T KOG1127|consen 639 MECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIV 718 (1238)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 4466788888887777665421 0111222222222222222222 22222222222221122222222
Q ss_pred HHHHHHccCChH------HHHHHH-HHHHHCCC--------------------CCChhhHHHHHHHHHc----c----CC
Q 043480 236 ILNYYCDEVMLD------EAEKLV-MEMESCGI--------------------EPDVYSYNQLLKGLCN----S----NQ 280 (493)
Q Consensus 236 ll~~~~~~~~~~------~a~~~~-~~~~~~~~--------------------~~~~~~~~~l~~~~~~----~----~~ 280 (493)
+..+|.-.-..+ ....++ .+....+. ..+..+|..++..|.+ . .+
T Consensus 719 asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~ 798 (1238)
T KOG1127|consen 719 ASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKD 798 (1238)
T ss_pred HhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchh
Confidence 221111000000 000000 00111111 1123333333332222 1 12
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043480 281 LDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQ 360 (493)
Q Consensus 281 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 360 (493)
...|...+.+.++.... +...|+.|.-. ...|++.-+...|-+-.... +....+|..+...+....+++.|...|..
T Consensus 799 ~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 799 ACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred HHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHh
Confidence 23455555555543322 45556555443 44455555555554444332 22455666666666777778888888877
Q ss_pred HHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHH--HH--hCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH-----
Q 043480 361 MRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLD--MV--EQGITPDVISYNALINGLCKSSRVSEAMHLYEEM----- 431 (493)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--~~--~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~----- 431 (493)
.+... |.+...|-.....-...|+.-++..+|.- .. ..|--|...-|-+........|+.++-+...+.+
T Consensus 876 ~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 876 VQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred hhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 77654 45555555555545556666666666654 11 1233444444444444445566655544433333
Q ss_pred -----HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 432 -----QIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 432 -----~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 467 (493)
.. +.+-....|...+....+.+.+++|.....++.
T Consensus 955 al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 955 ALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 22 122246677777777777777777766665543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-08 Score=86.07 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=63.9
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHH----cC
Q 043480 274 GLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLR----EG 349 (493)
Q Consensus 274 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 349 (493)
.+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+. . +..+...+..++.. ..
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~-eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D-EDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S-CCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-CcHHHHHHHHHHHHHHhCch
Confidence 344455555555444321 13334444455555555555555555555443 1 22223333333222 12
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh-hHHHHHH
Q 043480 350 SSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRV-SEAMHLY 428 (493)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~ 428 (493)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+ +-++.+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 345555555554432 23444555555555555555555555555544332 22334444444444444444 3344444
Q ss_pred HHHHH
Q 043480 429 EEMQI 433 (493)
Q Consensus 429 ~~~~~ 433 (493)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.3e-06 Score=86.09 Aligned_cols=382 Identities=12% Similarity=0.013 Sum_probs=226.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHh
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (493)
+....+..+...|++.+|...+..+.... .-..........+...|+++.+..+++.+.......++.........+.
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 44555667778888888877665542211 0011122233445667888888888776632211222333334445556
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HhHH
Q 043480 91 EVKNFTLINILLDNMDKLALEVFHKMVSKGREPDV--VTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN----KACA 164 (493)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 164 (493)
..++++++...+... .+.+.... .+..+.. .....+...+...|++++|...+++....-...+. .+..
T Consensus 421 ~~g~~~~a~~~l~~a----~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 421 SQHRYSEVNTLLARA----EQELKDRN-IELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HCCCHHHHHHHHHHH----HHhccccC-cccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 778886665444322 11111100 0001111 12223345567899999999999988763111121 2345
Q ss_pred HHHHHHhccCchhHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHH
Q 043480 165 ALVVGLCGDGKVDLAYELTVGAMKGKV-----EFGVLIYNALISGFCRTGRIRRAMAIKSFMKWN----GCE--P-DLVT 232 (493)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~ 232 (493)
.+...+...|+++.|...+.+...... .....++..+...+...|+++.|...+++.... +.. + ....
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 566667789999999999888774211 111234556677788899999999988876542 211 1 1233
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCC--CCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-ChhhH----
Q 043480 233 YNAILNYYCDEVMLDEAEKLVMEMESCG--IEP--DVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR-DKVSY---- 303 (493)
Q Consensus 233 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~---- 303 (493)
+..+...+...|++++|...+++..... ..+ ....+..+...+...|+.+.|...+.......... ....+
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 4445566677899999999988875421 112 12334445667788999999999888875531111 11111
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH---hHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHhHH
Q 043480 304 -NTVIEAFCKGGQTRRAYKLFEGMRRRGIELDV---VTFTILIKAFLREGSSAMAEKLLNQMRGM----NLSP-DRILYT 374 (493)
Q Consensus 304 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~ 374 (493)
...+..+...|+.+.|..++............ .....+..++...|+.++|...++..... +... ...+..
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~ 735 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLI 735 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 11223445578899998887775542211111 11345666778899999999999887642 2222 224566
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhC
Q 043480 375 TIIDCLCKSREIGTAYGVFLDMVEQ 399 (493)
Q Consensus 375 ~l~~~~~~~~~~~~a~~~~~~~~~~ 399 (493)
.+..++...|+.++|...+.+..+.
T Consensus 736 ~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 736 LLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777888999999999999998865
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-07 Score=83.84 Aligned_cols=249 Identities=12% Similarity=0.046 Sum_probs=177.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH
Q 043480 204 GFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDK 283 (493)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 283 (493)
-+.+.|++.+|.-.|+...+.. |-+...|..|....+..++-..|+..+++..+.. +.+......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 4567888888888888888775 6677888888888888888888999888888764 4456777778888888888888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHH-----------HHHHHcCCHHHHHHHHHHHHH-cCCCcCHhHHHHHHHHHHHcCCH
Q 043480 284 AYMFMVKKMEAKGLRDKVSYNTVI-----------EAFCKGGQTRRAYKLFEGMRR-RGIELDVVTFTILIKAFLREGSS 351 (493)
Q Consensus 284 a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~ 351 (493)
|+..+.+-+...+.. ..+. ..+.....+....++|-++.. .+..+|+.....|.-.|--.|.+
T Consensus 372 Al~~L~~Wi~~~p~y-----~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKY-----VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCccc-----hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 988888887654321 0000 011111223344455555443 34346777788888888888999
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHH
Q 043480 352 AMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDV-ISYNALINGLCKSSRVSEAMHLYEE 430 (493)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (493)
++|...|+.+.... |.|..+||.|...++...+.++|+..|+++++. .|+. .+...|.-+|...|.+++|...|-.
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999888765 667788999998888888899999999998874 6663 4556677788889999999888876
Q ss_pred HHHc---------CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043480 431 MQIR---------GAHPDEVTFKLLIGGLVQEKKLELACRL 462 (493)
Q Consensus 431 ~~~~---------~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 462 (493)
.+.. ...++..+|.+|=.++.-.++.|-+.+.
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 5432 1112345777777666667776655444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.8e-05 Score=74.44 Aligned_cols=161 Identities=16% Similarity=0.096 Sum_probs=94.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 043480 300 KVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDC 379 (493)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (493)
+..|..+..+-.+.|...+|++-|-+. -|+..|..++....+.|.+++-.+.+...++..-.|.. =+.++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHH
Confidence 345666666666666666665544332 15556666666666777777666666665554333332 2456666
Q ss_pred HHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043480 380 LCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELA 459 (493)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 459 (493)
|++.+++.+-++++ .-||......+.+-|...|.++.|.-++.. ...|..|...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHH
Confidence 66666665544433 235655566666666666666666655543 33456666667777777766
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhchh
Q 043480 460 CRLWDQMMEKGFTLDKTVSAALIEAIHLQDA 490 (493)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 490 (493)
...-+++ .+..+|..+-.+|-..++
T Consensus 1240 VD~aRKA------ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1240 VDAARKA------NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred HHHhhhc------cchhHHHHHHHHHhchhh
Confidence 5554444 245677777777665544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-08 Score=85.33 Aligned_cols=146 Identities=21% Similarity=0.239 Sum_probs=61.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCCHh
Q 043480 312 KGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK----SREIG 387 (493)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 387 (493)
..|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.+ .| .+...+..++.. ...+.
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHH
Confidence 345555554444321 133344444445555555555555555554421 12 122222222211 12345
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 043480 388 TAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKL-ELACRLWDQM 466 (493)
Q Consensus 388 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 466 (493)
+|..+|+++.+. ..+++.+.+.+..++...|++++|..++++....+.. ++.++..++-+....|+. +.+.+.+.++
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 555555554433 3344444555555555555555555555554433211 344444444444444444 3344444444
Q ss_pred HH
Q 043480 467 ME 468 (493)
Q Consensus 467 ~~ 468 (493)
..
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-05 Score=83.27 Aligned_cols=306 Identities=12% Similarity=-0.014 Sum_probs=193.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCC--C----CCCH--HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCC----hh
Q 043480 129 TIVIDGLCKAKEFDKAVQAWEHMIENG--I----KPDN--KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFG----VL 196 (493)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~ 196 (493)
......+...|+++++...+......- . .+.. .....+...+...|+++.|...++.........+ ..
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 344555667899999999998775431 0 1111 1222334455678999999999988776321112 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHccCChHHHHHHHHHHHH----CCCCC---C
Q 043480 197 IYNALISGFCRTGRIRRAMAIKSFMKWNGC---EPD--LVTYNAILNYYCDEVMLDEAEKLVMEMES----CGIEP---D 264 (493)
Q Consensus 197 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~---~ 264 (493)
..+.+...+...|++++|...+++.....- .+. ..+...+...+...|++++|...+++... .+... .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 345566677789999999999888764210 111 23445556677889999999998887653 22111 1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--C--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-CHhHH-
Q 043480 265 VYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGL--R--DKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIEL-DVVTF- 338 (493)
Q Consensus 265 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~- 338 (493)
...+..+...+...|++++|...+.+....... + ....+..+.......|+++.|.+.+.......... ....+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 223445556677789999999988877653111 1 22334445667778899999999988875421111 11111
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHccCCHhHHHHHHHHHHhC----CCCCC-Hh
Q 043480 339 ----TILIKAFLREGSSAMAEKLLNQMRGMNLSPD---RILYTTIIDCLCKSREIGTAYGVFLDMVEQ----GITPD-VI 406 (493)
Q Consensus 339 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~ 406 (493)
...+..+...|+.+.|...+........... ...+..+..++...|++++|...+++.... |..++ ..
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 1122344567899999988877654221111 112345677788899999999999888753 32222 23
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 407 SYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
+...+..++...|+.++|...+.+..+.
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5566677888999999999999998764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.1e-06 Score=68.04 Aligned_cols=301 Identities=11% Similarity=0.021 Sum_probs=184.5
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhh-HHHHH
Q 043480 124 DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLI-YNALI 202 (493)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~ 202 (493)
++.-..-+...+...|++..|+.-|...++.+ +.+-.++..-...|...|+-.-|+.-+..+++. .||-.. --.-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 34444456667777888888888888877642 112334444455677778777777777777765 344221 12233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH----------------HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChh
Q 043480 203 SGFCRTGRIRRAMAIKSFMKWNGCEPDLV----------------TYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVY 266 (493)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 266 (493)
..+.+.|.++.|..=|+.+.+.. |+.. .....+..+...|+...++.....+.+.. +-+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 45677888888888888887663 2111 12233445566788888888888887754 45677
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHH----HH-
Q 043480 267 SYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFT----IL- 341 (493)
Q Consensus 267 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l- 341 (493)
.+..-..+|...|++..|+.-++........ +...+.-+-..+...|+.+.++...++..+. .||....- .+
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHH
Confidence 7777788888888888887777666554333 4455555666777788888888888877765 44443221 11
Q ss_pred --------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHH
Q 043480 342 --------IKAFLREGSSAMAEKLLNQMRGMNLSPDRI---LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNA 410 (493)
Q Consensus 342 --------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 410 (493)
+......+++.++.+-.+...+........ .+..+-.++...|.+.+|++.-.++++.. +.|..++..
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~d 346 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHH
Confidence 111233455666666666555543221122 23344445555666777777776666541 223566666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 043480 411 LINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
-..+|.-...++.|+.-|+...+.
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhc
Confidence 666666666777777777776664
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-05 Score=73.07 Aligned_cols=376 Identities=15% Similarity=0.102 Sum_probs=190.7
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhh--------------------CCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQ--------------------SNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQ 68 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 68 (493)
...|..+.......|++--|.+.|..+-+ .| .....-|..-...-.-.+++.+|..+|-
T Consensus 477 ~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~g-gdgt~fykvra~lail~kkfk~ae~ifl 555 (1636)
T KOG3616|consen 477 EAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIG-GDGTDFYKVRAMLAILEKKFKEAEMIFL 555 (1636)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhC-CCCchHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34477777777777777777777654321 11 1112223322222223345666666654
Q ss_pred HhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHH-----HHHHHHHHHHHhCCC-------CCCHhhHHHHHHHHh
Q 043480 69 QMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMD-----KLALEVFHKMVSKGR-------EPDVVTYTIVIDGLC 136 (493)
Q Consensus 69 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~a~~~~~~~~~~g~-------~~~~~~~~~l~~~~~ 136 (493)
+-- .-...+..|....+|++++.+.+..- +.-...++.+...|. +.+.---.+.|..|.
T Consensus 556 eqn---------~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~sdgd~laaiqlyi 626 (1636)
T KOG3616|consen 556 EQN---------ATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKESDGDGLAAIQLYI 626 (1636)
T ss_pred hcc---------cHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccccCccHHHHHHHH
Confidence 321 11223445555566665554433211 111222232222221 111112234567788
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 043480 137 KAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMA 216 (493)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 216 (493)
+.|.+..|.+.-..-.+ +..|......+..++.+..-++.|-.+|+++... ...+.+|-+..-+.+|.+
T Consensus 627 ka~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgdaf~kaie 695 (1636)
T KOG3616|consen 627 KAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGDAFGKAIE 695 (1636)
T ss_pred HcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHcccHHHHHHH
Confidence 88887777654422111 2235555555555555555556665555555421 111222222222222222
Q ss_pred HHHHHH----------------HCCCCCCH--------HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 043480 217 IKSFMK----------------WNGCEPDL--------VTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLL 272 (493)
Q Consensus 217 ~~~~~~----------------~~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 272 (493)
+-+-.- ..| ..|. ...-..+.+......|.+|+.+++.+.... .-..-|..+.
T Consensus 696 larfafp~evv~lee~wg~hl~~~~-q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~ia 772 (1636)
T KOG3616|consen 696 LARFAFPEEVVKLEEAWGDHLEQIG-QLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIA 772 (1636)
T ss_pred HHHhhCcHHHhhHHHHHhHHHHHHH-hHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHH
Confidence 211110 000 0000 011122334445667777888877776543 2334566677
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHH
Q 043480 273 KGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSA 352 (493)
Q Consensus 273 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 352 (493)
+.|...|+++.|.++|.+.- .++-.|.+|.+.|+++.|.++-++.. |.......|..-..-.-..|.+.
T Consensus 773 dhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~ 841 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFA 841 (1636)
T ss_pred HHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchh
Confidence 88888888888888775432 24556778888888888887766553 33445555666666666778887
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043480 353 MAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEM 431 (493)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 431 (493)
+|++++-.+. .|+ ..|..|-+.|..+...++..+-... .-..|...+..-+-..|+...|...|-+.
T Consensus 842 eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 842 EAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 7777764443 344 2355666777777666665543211 11233444555555666666666555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.6e-07 Score=87.44 Aligned_cols=244 Identities=10% Similarity=0.024 Sum_probs=162.5
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC-CCCc---ChhhHHHHHHHHhccCChhhHHHHH
Q 043480 27 QAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL-GFSL---TPFTYSRFISGLCEVKNFTLINILL 102 (493)
Q Consensus 27 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~ 102 (493)
.|.++ ++....+ |.+...|...+......++.++|+++.++++.. ++.. -...|.++++.--.-|.-
T Consensus 1443 saeDf-erlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~e------- 1513 (1710)
T KOG1070|consen 1443 SAEDF-ERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTE------- 1513 (1710)
T ss_pred CHHHH-HHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcH-------
Confidence 44443 3444433 667777888888888888888888888887764 1111 123455666555555543
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHH
Q 043480 103 DNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYEL 182 (493)
Q Consensus 103 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 182 (493)
+...++|+++.+. -..-..|..|...|.+.+.+++|.++|+.|.+. +......|...+..+.++++-+.|..+
T Consensus 1514 ----esl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~l 1586 (1710)
T KOG1070|consen 1514 ----ESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAAREL 1586 (1710)
T ss_pred ----HHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHH
Confidence 4566777777664 223456777888888888888888888888764 234667788888888888888888888
Q ss_pred HHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 043480 183 TVGAMKGKVE-FGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGI 261 (493)
Q Consensus 183 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 261 (493)
+.+.++.-.. -........+..-.+.|+.+.+..+|+...... |-....|+..++.-.+.|+.+.+..+|++....++
T Consensus 1587 L~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1587 LKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 8877765211 123344455555667788888888888877653 44567788888888888888888888888887776
Q ss_pred CCCh--hhHHHHHHHHHccCCHHHHHHH
Q 043480 262 EPDV--YSYNQLLKGLCNSNQLDKAYMF 287 (493)
Q Consensus 262 ~~~~--~~~~~l~~~~~~~~~~~~a~~~ 287 (493)
.|.. ..|...+..--+.|+-..+..+
T Consensus 1666 ~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1666 SIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred ChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 6543 4556666555555665544433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-06 Score=75.32 Aligned_cols=218 Identities=9% Similarity=-0.003 Sum_probs=149.6
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHhccCCCCcChhhHHHHHHH
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHS-RFDLVQFYYQQMHPLGFSLTPFTYSRFISG 88 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 88 (493)
.++..+-..+...+..++|+.+++.+++.+ |.+..+|+....++...| ++++++..++++++.+ +.+..+|+.....
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 445556666777889999999999999987 667778888877888887 5799999999998875 4555567665555
Q ss_pred HhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 043480 89 LCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVV 168 (493)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 168 (493)
+.+.+.... +.++..++++.+. .+-+..+|+....++...|+++++++.++++++.+.. +..+|+....
T Consensus 116 l~~l~~~~~---------~~el~~~~kal~~-dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~ 184 (320)
T PLN02789 116 AEKLGPDAA---------NKELEFTRKILSL-DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYF 184 (320)
T ss_pred HHHcCchhh---------HHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHH
Confidence 555554210 3457777788775 3457888999888888999999999999999987643 6677776665
Q ss_pred HHhcc---Cch----hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043480 169 GLCGD---GKV----DLAYELTVGAMKGKVEFGVLIYNALISGFCRT----GRIRRAMAIKSFMKWNGCEPDLVTYNAIL 237 (493)
Q Consensus 169 ~~~~~---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 237 (493)
.+... |.. +...+...+.+... +-+...|+-+...+... +...+|.+.+.+....+ +.+......++
T Consensus 185 vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~ 262 (320)
T PLN02789 185 VITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLL 262 (320)
T ss_pred HHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHH
Confidence 55443 222 34555555555544 45667777666666652 23455666666655543 44555566666
Q ss_pred HHHHc
Q 043480 238 NYYCD 242 (493)
Q Consensus 238 ~~~~~ 242 (493)
..|+.
T Consensus 263 d~~~~ 267 (320)
T PLN02789 263 DLLCE 267 (320)
T ss_pred HHHHh
Confidence 66654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-06 Score=84.29 Aligned_cols=238 Identities=9% Similarity=0.034 Sum_probs=182.0
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC-CCC---CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhh
Q 043480 227 EPDLVTYNAILNYYCDEVMLDEAEKLVMEMESC-GIE---PDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVS 302 (493)
Q Consensus 227 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 302 (493)
|.+...|-..|......++.++|.++.++++.. ++. --...|.++++.-...|.-+...++|+++.+... ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHHH
Confidence 556677888888888999999999999888743 111 1235677788777777888888888888877521 2345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHH
Q 043480 303 YNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNL-SPDRILYTTIIDCLC 381 (493)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 381 (493)
|..|...|.+.+..++|.++++.|.+. .......|...+..+.+..+-+.|..++.+..+.-. ..........+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 788888899999999999999999877 335777888889999999888999999988886421 123455666677778
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 043480 382 KSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD--EVTFKLLIGGLVQEKKLELA 459 (493)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a 459 (493)
+.|+.+++..+|+..+.. .+--...|+.+++.-.++|+.+.++.+|++....++.|- -..|...+..--..|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 889999999999988876 344567899999999999999999999999998888774 45667777766677887766
Q ss_pred HHHHHHHHH
Q 043480 460 CRLWDQMME 468 (493)
Q Consensus 460 ~~~~~~~~~ 468 (493)
..+=.++.+
T Consensus 1691 E~VKarA~E 1699 (1710)
T KOG1070|consen 1691 EYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHH
Confidence 666555543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.8e-05 Score=71.05 Aligned_cols=208 Identities=12% Similarity=0.085 Sum_probs=138.2
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhH
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTY 82 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (493)
+++|..+.+-..=+-...+.|+.++|..+++.....+ +.|..+...+-.+|.+.++.++|..+|++.... .|+....
T Consensus 37 kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell 113 (932)
T KOG2053|consen 37 KKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELL 113 (932)
T ss_pred HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHH
Confidence 3444444443333445678899999999998877665 557888888889999999999999999999876 4667777
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC-C---------HHHHHHHHHHHH
Q 043480 83 SRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAK-E---------FDKAVQAWEHMI 152 (493)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~-~---------~~~a~~~~~~~~ 152 (493)
..+..+|.+.+++..-. +.|++++.. .+.+...|-+++..+...- . ..-|.+.++.+.
T Consensus 114 ~~lFmayvR~~~yk~qQ-------kaa~~LyK~-----~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l 181 (932)
T KOG2053|consen 114 YHLFMAYVREKSYKKQQ-------KAALQLYKN-----FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLL 181 (932)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHh-----CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHh
Confidence 78888888888775443 556666652 3445555555665554321 1 224556666666
Q ss_pred HCC-CCCCHHhHHHHHHHHhccCchhHHHHHHH-HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043480 153 ENG-IKPDNKACAALVVGLCGDGKVDLAYELTV-GAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNG 225 (493)
Q Consensus 153 ~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 225 (493)
+.+ ..-+..-...-...+...|++++|.+++. ...+.....+...-+.-+..+...++|.+..++-.++...|
T Consensus 182 ~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 182 EKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred ccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 553 11122222222334556788999999984 33333334444555567788888999999999998888875
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-06 Score=80.39 Aligned_cols=232 Identities=13% Similarity=0.056 Sum_probs=176.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 043480 232 TYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFC 311 (493)
Q Consensus 232 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (493)
.-..+...+.+.|-...|..++++.. .|..++.+|...|+.++|..+..+..+ ..|++..|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence 33456667778888888888888764 466678889999999999888877776 3468888888877776
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHH
Q 043480 312 KGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYG 391 (493)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 391 (493)
...-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-....+..+.++++.|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 666677888877765432 11122222334789999999998887765 5677788888888899999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 043480 392 VFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGF 471 (493)
Q Consensus 392 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 471 (493)
.|....... +-+...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+-...+.|.+++|.+.+.++.....
T Consensus 541 aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 541 AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 999988752 3356789999999999999999999999999887 44788888888899999999999999999887521
Q ss_pred -CCCHHHHHHHHHH
Q 043480 472 -TLDKTVSAALIEA 484 (493)
Q Consensus 472 -~~~~~~~~~ll~~ 484 (493)
..|..+...++..
T Consensus 619 ~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 619 KYKDDEVLLIIVRT 632 (777)
T ss_pred hcccchhhHHHHHH
Confidence 1244444444443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-05 Score=74.67 Aligned_cols=267 Identities=13% Similarity=0.108 Sum_probs=165.0
Q ss_pred ChhhHHHHHH--HHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHH-HHHHHHHHHHHhC
Q 043480 43 FSIDYNRFIG--VLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMD-KLALEVFHKMVSK 119 (493)
Q Consensus 43 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~a~~~~~~~~~~ 119 (493)
|..+-..++. .|..-|+.+.|.+-.+-+. +...|..+.+.|.+..+.+-|.-.+..+. ....+.+++..+.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4555555653 4667788888877776653 23468888888888888877776666664 2234455555554
Q ss_pred CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHH
Q 043480 120 GREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYN 199 (493)
Q Consensus 120 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 199 (493)
|. ..=..+.-.....|.+++|+.+|.+-... ..|=..|-..|.|++|.++-+.--.. .-..+|.
T Consensus 799 ~~----e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy 862 (1416)
T KOG3617|consen 799 GE----EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYY 862 (1416)
T ss_pred Cc----chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHH
Confidence 32 11122233345679999999999988764 22334566789999998875432221 1234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 043480 200 ALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSN 279 (493)
Q Consensus 200 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 279 (493)
....-+...++.+.|++.|++.. .|-...+..|. .++...+.+.+.+ .|...|..........|
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~----~hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~G 926 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAG----VHAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVG 926 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcC----ChHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhccc
Confidence 66667777889999999998764 22222222222 1233333333333 34456666666667788
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 043480 280 QLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLN 359 (493)
Q Consensus 280 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 359 (493)
+++.|+.++..+.+ |-.++...|-.|+.++|-++-++-. |....-.+.+.|-..|++.+|...|.
T Consensus 927 emdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 927 EMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred chHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 88888887766654 4555666666777777766655432 44555566677777777777777766
Q ss_pred HHH
Q 043480 360 QMR 362 (493)
Q Consensus 360 ~~~ 362 (493)
+.+
T Consensus 992 rAq 994 (1416)
T KOG3617|consen 992 RAQ 994 (1416)
T ss_pred HHH
Confidence 554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.8e-07 Score=73.37 Aligned_cols=166 Identities=16% Similarity=0.034 Sum_probs=102.1
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCC
Q 043480 41 RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKG 120 (493)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g 120 (493)
|-|..+ ...-..+...|+-+.+..+........ +.+.......+....+.|++ ..|...|++....
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~-----------~~A~~~~rkA~~l- 129 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNF-----------GEAVSVLRKAARL- 129 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcch-----------HHHHHHHHHHhcc-
Confidence 334444 445556666666666666665543321 34444555566666677777 5555666666554
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHH
Q 043480 121 REPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNA 200 (493)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (493)
-++|...|+.+.-+|.+.|+++.|..-|.+..+.. .-+...++.+...+.-.|+.+.|..++......+ ..+..+-..
T Consensus 130 ~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~N 207 (257)
T COG5010 130 APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQN 207 (257)
T ss_pred CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHH
Confidence 45566677777777777777777777777666642 2244566666666677777777777776666553 335556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 043480 201 LISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 201 l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
+.......|+++.|.++...-.
T Consensus 208 LAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 208 LALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHhhcCChHHHHhhccccc
Confidence 6666777777777776655544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-05 Score=69.94 Aligned_cols=217 Identities=9% Similarity=0.000 Sum_probs=111.0
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH--HHHH
Q 043480 244 VMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSN-QLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQT--RRAY 320 (493)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~ 320 (493)
+..++|+.+...+.+.. +-+..+|+....++...| ++++++..+.++....+. +..+|+.....+.+.|.. ++++
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHH
Confidence 34444555554444422 112223333333333334 345555555555554332 333444333333333332 4455
Q ss_pred HHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc---CC----HhHHHHHH
Q 043480 321 KLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKS---RE----IGTAYGVF 393 (493)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~----~~~a~~~~ 393 (493)
..++.+.+...+ +..+|+....++...|+++++++.++.+.+.+ +.+...|+.....+.+. |. .++.....
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 566565555332 55566666666666666666666666666654 34445555544444333 21 23455555
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhc----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---------------
Q 043480 394 LDMVEQGITPDVISYNALINGLCKS----SRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEK--------------- 454 (493)
Q Consensus 394 ~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------------- 454 (493)
.+++... +-|...|+.+...+... ++..+|...+.+..+.++. +...+..|++.|+...
T Consensus 207 ~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~ 284 (320)
T PLN02789 207 IDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDTLAE 284 (320)
T ss_pred HHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence 5655542 33556666666666552 3345566666666553322 5666777777776532
Q ss_pred ---CHHHHHHHHHHH
Q 043480 455 ---KLELACRLWDQM 466 (493)
Q Consensus 455 ---~~~~a~~~~~~~ 466 (493)
..++|.++++.+
T Consensus 285 ~~~~~~~a~~~~~~l 299 (320)
T PLN02789 285 ELSDSTLAQAVCSEL 299 (320)
T ss_pred ccccHHHHHHHHHHH
Confidence 236677777777
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.4e-07 Score=75.78 Aligned_cols=186 Identities=9% Similarity=-0.023 Sum_probs=123.0
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChh--
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS---IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPF-- 80 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 80 (493)
+..+..+..++..+...|++++|...|+++.... |.++ ..+..+..++...|++++|...++++.+... .++.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchH
Confidence 4566778889999999999999999999998865 3333 4677788999999999999999999987642 1222
Q ss_pred -hHHHHHHHHhcc--------CChhhHHHHHHHHHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHH
Q 043480 81 -TYSRFISGLCEV--------KNFTLINILLDNMDKLALEVFHKMVSKGREPD-VVTYTIVIDGLCKAKEFDKAVQAWEH 150 (493)
Q Consensus 81 -~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 150 (493)
++..+..++... |+. +.|.+.|+.+... .|+ ...+..+..... ... .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~-----------~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~ 164 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAA-----------REAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------R 164 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHH-----------HHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------H
Confidence 344444444433 334 6677888887764 333 223322221100 000 0
Q ss_pred HHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043480 151 MIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKV--EFGVLIYNALISGFCRTGRIRRAMAIKSFMKWN 224 (493)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (493)
.. .....+...+...|+++.|...+....+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 165 ~~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 165 LA--------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 00 1112455567778888888888888776531 223467778888888888888888888877654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-06 Score=69.71 Aligned_cols=125 Identities=10% Similarity=0.147 Sum_probs=90.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HhcCC--hhHH
Q 043480 348 EGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGL-CKSSR--VSEA 424 (493)
Q Consensus 348 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~a 424 (493)
.++.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 556667777777766655 6777788888888888888888888888888763 33566777777654 56666 4788
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043480 425 MHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKT 476 (493)
Q Consensus 425 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 476 (493)
.+++++..+.+.. +...+..+...+...|++++|...|+++++. .+|+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~ 179 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVN 179 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCcc
Confidence 8888888775433 6777888888888888888888888888775 344443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.2e-06 Score=74.93 Aligned_cols=220 Identities=14% Similarity=0.090 Sum_probs=169.6
Q ss_pred CCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043480 158 PDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAIL 237 (493)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 237 (493)
|-...-..+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+..++ +|++.-|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333344556677788888899998888764 4667888899999999999888888774 88888888888
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHH
Q 043480 238 NYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTR 317 (493)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 317 (493)
+......-+++|.++.+..-.. .-..+.....+.+++.++.+.|+......+. ...+|-.+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhH
Confidence 8777777777787777664321 1122233344578899999999888876554 6677888888888899999
Q ss_pred HHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHH
Q 043480 318 RAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMV 397 (493)
Q Consensus 318 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 397 (493)
.|.+.|....... +-+...|+.+-.+|.+.++..+|...+.+..+.+ ..+...|...+....+.|.+++|.+.+.++.
T Consensus 537 ~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9999998887652 2356789999999999999999999999999877 5666777777777888999999999998887
Q ss_pred h
Q 043480 398 E 398 (493)
Q Consensus 398 ~ 398 (493)
+
T Consensus 615 ~ 615 (777)
T KOG1128|consen 615 D 615 (777)
T ss_pred H
Confidence 4
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.8e-06 Score=78.94 Aligned_cols=242 Identities=10% Similarity=0.078 Sum_probs=140.8
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
.|.+..++..|+..|...|++++|.++.+...+.. |.....|..++..+...+++.++..+ .+..
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------ 91 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLID------------ 91 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhh------------
Confidence 45677788888999989999999999998877764 44455555555567777776555554 2222
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACA 164 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 164 (493)
......++ .....+...+.. ..-+..++-.+..+|-+.|+.++|.++|+++++.. +-|..+.+
T Consensus 92 ---~~~~~~~~-----------~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLN 154 (906)
T PRK14720 92 ---SFSQNLKW-----------AIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVK 154 (906)
T ss_pred ---hcccccch-----------hHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHH
Confidence 22222222 111122222222 22244467778888888888888888888888876 34677888
Q ss_pred HHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 043480 165 ALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEV 244 (493)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 244 (493)
.+...|... ++++|.+++.++... +...+++..+.+++.++.... +.+...+..+++.....-
T Consensus 155 n~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHR 217 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhh
Confidence 888888877 888888877766542 555667777777777776542 222222222222111110
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 043480 245 MLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFC 311 (493)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (493)
|...-..++-.+-..|-..++++++..++..+++..+. |.....-++.+|.
T Consensus 218 ---------------~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 ---------------EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ---------------ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11122233334444555555666666666666655443 4444444444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.7e-05 Score=63.00 Aligned_cols=137 Identities=21% Similarity=0.226 Sum_probs=63.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----c
Q 043480 308 EAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK----S 383 (493)
Q Consensus 308 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 383 (493)
..|+..|++++|++..+... +......=+..+.+..+.+.|...++.|.+. .+..+.+.|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 34455555555555554411 1122222223334444555555555555542 233444444444432 2
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043480 384 REIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKK 455 (493)
Q Consensus 384 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 455 (493)
+.+.+|.-+|++|.++ .+|+..+.+....++...|++++|..+++........ ++.+...++-.-...|+
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGK 256 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCC
Confidence 2355555555555543 3455555555555555555555555555555544322 44444444443333443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.7e-06 Score=66.05 Aligned_cols=157 Identities=14% Similarity=0.044 Sum_probs=89.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 043480 306 VIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSRE 385 (493)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 385 (493)
+-..+...|+-+....+....... .+.|.......+....+.|++..|...+.+..... ++|...|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 334444455555555554443322 12244444445566666666666666666666554 5666666666666666666
Q ss_pred HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043480 386 IGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQ 465 (493)
Q Consensus 386 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 465 (493)
++.|..-|.+..+.. .-+...++.+.-.+.-.|+.+.|..++......+.. |..+-..+..+....|++++|..+...
T Consensus 150 ~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 150 FDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 666666666666541 223445566666666666666666666666554222 555555666666666666666655444
Q ss_pred H
Q 043480 466 M 466 (493)
Q Consensus 466 ~ 466 (493)
-
T Consensus 228 e 228 (257)
T COG5010 228 E 228 (257)
T ss_pred c
Confidence 3
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-08 Score=54.17 Aligned_cols=31 Identities=35% Similarity=0.663 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 436 AHPDEVTFKLLIGGLVQEKKLELACRLWDQM 466 (493)
Q Consensus 436 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 466 (493)
+.||..+|++||++|++.|++++|.+++++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3344444444444444444444444444433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4e-05 Score=62.02 Aligned_cols=87 Identities=10% Similarity=0.055 Sum_probs=40.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 043480 205 FCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYC----DEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQ 280 (493)
Q Consensus 205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 280 (493)
+.+..+++-|.+.+++|.+-. +..|.+.|..++. ..+.+.+|.-+|++|.+. .+|++.+.+....++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 344444555555555554321 3333333333332 233444555555555432 23555555555555555555
Q ss_pred HHHHHHHHHHHHHcC
Q 043480 281 LDKAYMFMVKKMEAK 295 (493)
Q Consensus 281 ~~~a~~~~~~~~~~~ 295 (493)
+++|..+++..+...
T Consensus 223 ~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 223 YEEAESLLEEALDKD 237 (299)
T ss_pred HHHHHHHHHHHHhcc
Confidence 555555555555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.4e-06 Score=69.68 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=41.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 410 ALINGLCKSSRVSEAMHLYEEMQIRGA-HP-DEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 410 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.+...+...|++.+|...+++..+... .| ....+..+..++...|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445567777888888888877766422 12 3567777778888888888888877777543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00021 Score=64.03 Aligned_cols=173 Identities=13% Similarity=0.120 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHH
Q 043480 316 TRRAYKLFEGMRRRGIELDVVTFTILIKAFLREG---SSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGV 392 (493)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 392 (493)
.+++..+++.....-..-+..+|..+...--..- ..+....+++++.......-..+|-.+++.-.+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3456666666554422223344444433222222 2556667777776533233345677888888888889999999
Q ss_pred HHHHHhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 043480 393 FLDMVEQGITP-DVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGF 471 (493)
Q Consensus 393 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 471 (493)
|.++.+.+..+ .+.++++++.-++ .+|.+-|.++|+--.+. +.-++.--...++-+...++-..|..+|++.+..++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999887777 6677778887555 67889999999987765 333455556788889999999999999999999866
Q ss_pred CCCH--HHHHHHHHHHhhchh
Q 043480 472 TLDK--TVSAALIEAIHLQDA 490 (493)
Q Consensus 472 ~~~~--~~~~~ll~~~~~~~~ 490 (493)
.+|. .+|...+.-=..-|+
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred ChhhhHHHHHHHHHHHHhccc
Confidence 6654 778877765444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.5e-08 Score=53.34 Aligned_cols=33 Identities=55% Similarity=1.097 Sum_probs=31.4
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043480 399 QGITPDVISYNALINGLCKSSRVSEAMHLYEEM 431 (493)
Q Consensus 399 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 431 (493)
+|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 478999999999999999999999999999986
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.4e-07 Score=71.52 Aligned_cols=156 Identities=8% Similarity=-0.003 Sum_probs=104.9
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCCh
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNF 95 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 95 (493)
+..|..-|+++......+.+... .. .+...++.+++...++..++.+ +.+...|..+...+...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~---~~---------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP---LH---------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc---cc---------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 46678888887765554333211 10 1112566677777777777665 66777888888888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HhccCC--HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc
Q 043480 96 TLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDG-LCKAKE--FDKAVQAWEHMIENGIKPDNKACAALVVGLCG 172 (493)
Q Consensus 96 ~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (493)
+.|...+++.... .+.+...+..+..+ +...|+ .++|.+++++..+.+. -+..++..+...+..
T Consensus 90 -----------~~A~~a~~~Al~l-~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~ 156 (198)
T PRK10370 90 -----------DNALLAYRQALQL-RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFM 156 (198)
T ss_pred -----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHH
Confidence 5666777777765 34466677777765 356666 4888888888887642 256777778888888
Q ss_pred cCchhHHHHHHHHHHhCCCCCChhhH
Q 043480 173 DGKVDLAYELTVGAMKGKVEFGVLIY 198 (493)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~ 198 (493)
.|++++|...|+.+.+.. +|+..-+
T Consensus 157 ~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 157 QADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 888888888888887765 4444433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4e-06 Score=64.14 Aligned_cols=91 Identities=10% Similarity=-0.121 Sum_probs=42.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043480 341 LIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR 420 (493)
Q Consensus 341 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (493)
....+...|++++|...|+...... +.+...|..+..++...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3344444455555555544444433 3344444444444444455555555555444432 2233444444444444455
Q ss_pred hhHHHHHHHHHHH
Q 043480 421 VSEAMHLYEEMQI 433 (493)
Q Consensus 421 ~~~a~~~~~~~~~ 433 (493)
+++|+..|+...+
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-06 Score=66.90 Aligned_cols=109 Identities=15% Similarity=0.007 Sum_probs=90.8
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
+|..+..+...+...|++++|...|+.+...+ |.+...|..+..++...|++++|...|++....+ +.++..+..+..
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~ 100 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGV 100 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 44456678899999999999999999999987 7789999999999999999999999999999876 667888999999
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTI 130 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 130 (493)
++...|++ +.|+..|+..... .+.+...|..
T Consensus 101 ~l~~~g~~-----------~eAi~~~~~Al~~-~p~~~~~~~~ 131 (144)
T PRK15359 101 CLKMMGEP-----------GLAREAFQTAIKM-SYADASWSEI 131 (144)
T ss_pred HHHHcCCH-----------HHHHHHHHHHHHh-CCCChHHHHH
Confidence 99999999 6677777877774 2334444433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.5e-05 Score=74.51 Aligned_cols=238 Identities=11% Similarity=0.060 Sum_probs=153.8
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHH
Q 043480 123 PDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN-KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNAL 201 (493)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (493)
.+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+...++.+.+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 35667888888888888999999888877665 3443 3344444455555554444333 33
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH
Q 043480 202 ISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQL 281 (493)
Q Consensus 202 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 281 (493)
+.......++.-+..+...+... .-+...+..+..+|.+.|+.+++..+++++.+.. +.++.+.+.+...|... ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 44444455554445555555543 3344567777888888888888888888888776 56777888888888877 88
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043480 282 DKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQM 361 (493)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 361 (493)
++|..++.++... +...+++..+.++|.++....+. +...+..+.+ .+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~----------------ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIER----------------KV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHH----------------HH
Confidence 8888877776553 55566788888888888876221 2222222222 22
Q ss_pred HhC-CCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 043480 362 RGM-NLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLC 416 (493)
Q Consensus 362 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 416 (493)
... +..--..++-.+...|-..++++++..+++.+++.. +-|......++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 211 122334455566667777888888888888888763 335566666777665
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.7e-05 Score=60.71 Aligned_cols=189 Identities=14% Similarity=0.100 Sum_probs=122.5
Q ss_pred ccCChHHHHHHHHHHHH---CC-CCCChh-hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH
Q 043480 242 DEVMLDEAEKLVMEMES---CG-IEPDVY-SYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQT 316 (493)
Q Consensus 242 ~~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 316 (493)
...+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++......+. +...-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhch
Confidence 35567788888877753 23 344433 3445555666778888888888777766532 222222222233446788
Q ss_pred HHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHH
Q 043480 317 RRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDM 396 (493)
Q Consensus 317 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 396 (493)
++|+++|+.+.+.+ +.|..++..-+...-..|..-+|++-+....+.- ..|...|..+...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888888765 3466666666666666777777777777766543 677888888888888888888888888887
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcC---ChhHHHHHHHHHHHc
Q 043480 397 VEQGITPDVISYNALINGLCKSS---RVSEAMHLYEEMQIR 434 (493)
Q Consensus 397 ~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~ 434 (493)
+-.. |.++..+..+...+.-.| +...+.+++.+..+.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 7542 334455555655554433 556677778777764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.2e-05 Score=73.85 Aligned_cols=132 Identities=10% Similarity=0.037 Sum_probs=65.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 043480 299 DKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIID 378 (493)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 378 (493)
+...+..|.....+.|.+++|+.+++...+.. +-+......+...+.+.+.+++|....++..... +.+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 34444555555555555555555555555431 1123334444455555555555555555555443 344444455555
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 379 CLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555421 22244455555555555555555555555544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.2e-05 Score=73.22 Aligned_cols=147 Identities=12% Similarity=0.022 Sum_probs=110.5
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHH
Q 043480 121 REPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD-NKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYN 199 (493)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 199 (493)
.+.+...+-.|.....+.|.+++|..+++...+. .|+ ......+...+.+.+++++|....+...... +.+.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 4556778888888888888888888888888876 444 5667777888888888888888888888765 44666777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 043480 200 ALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLL 272 (493)
Q Consensus 200 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 272 (493)
.+..++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|+...+.- .+....|+..+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 77788888888888888888888743 4457778888888888888888888888877542 24444444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00038 Score=61.76 Aligned_cols=159 Identities=15% Similarity=0.098 Sum_probs=121.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHh
Q 043480 308 EAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIG 387 (493)
Q Consensus 308 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 387 (493)
..+...|++++|+..++.+.+. .+-|+.........+...++..+|.+.++.+.... +......-.+..++.+.|++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChH
Confidence 3455678999999999998877 33466666777888899999999999999998764 333677778888999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 388 TAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 388 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 467 (493)
+|..++++.... .+-|+..|..|..+|...|+..++..-..+ .+...|+++.|...+..+.
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHH
Confidence 999999998876 466788999999999999988887764443 4667788899998888888
Q ss_pred HcC--CCCCHHHHHHHHHHHhh
Q 043480 468 EKG--FTLDKTVSAALIEAIHL 487 (493)
Q Consensus 468 ~~~--~~~~~~~~~~ll~~~~~ 487 (493)
+.. ..|+..-+...+.....
T Consensus 453 ~~~~~~~~~~aR~dari~~~~~ 474 (484)
T COG4783 453 QQVKLGFPDWARADARIDQLRQ 474 (484)
T ss_pred HhccCCcHHHHHHHHHHHHHHH
Confidence 762 23444444455554443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-06 Score=66.00 Aligned_cols=111 Identities=15% Similarity=0.068 Sum_probs=91.8
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhH
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTY 82 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (493)
...|.+......++..+...|++++|.+.|+.+...+ +.+...|..+...+...|++++|...+++.++.+ +.+...+
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~ 88 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPY 88 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHH
Confidence 4456677788889999999999999999999998876 6788889999999999999999999999998775 5567778
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhH
Q 043480 83 SRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTY 128 (493)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 128 (493)
..+..++...|++ +.|...|+...+. .|+...+
T Consensus 89 ~~la~~~~~~g~~-----------~~A~~~~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 89 FHAAECLLALGEP-----------ESALKALDLAIEI--CGENPEY 121 (135)
T ss_pred HHHHHHHHHcCCH-----------HHHHHHHHHHHHh--ccccchH
Confidence 8888899999999 6666777777764 3444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.5e-06 Score=63.12 Aligned_cols=98 Identities=13% Similarity=0.009 Sum_probs=58.6
Q ss_pred HHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043480 370 RILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGG 449 (493)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 449 (493)
......+...+...|++++|...++.+.+.+ +.+...+..+..++...|++++|...+++..+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3444455555566666666666666665542 3345556666666666666666666666665542 2245556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 043480 450 LVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~ 469 (493)
+...|++++|...+++.++.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00048 Score=60.38 Aligned_cols=462 Identities=13% Similarity=0.063 Sum_probs=260.6
Q ss_pred CccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChh
Q 043480 1 MIQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPF 80 (493)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (493)
.|+..|.|...|..|++-|..+|..++.+++++++...- |.-+.+|...+.+-....++.....+|.+.+... .+..
T Consensus 34 rIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ld 110 (660)
T COG5107 34 RIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLD 110 (660)
T ss_pred HhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHh
Confidence 377889999999999999999999999999999998753 5556678888888888899999999999998874 4566
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHh-CCCCCC-HhhHHHHHHHHh---------ccCCHHHHHHHHH
Q 043480 81 TYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVS-KGREPD-VVTYTIVIDGLC---------KAKEFDKAVQAWE 149 (493)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~-~g~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~ 149 (493)
.|...+....+.+..-....- ....++|+-... .++.|- ...|+..+..+- .+.+.+...+.|.
T Consensus 111 LW~lYl~YIRr~n~~~tGq~r-----~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 111 LWMLYLEYIRRVNNLITGQKR-----FKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred HHHHHHHHHHhhCcccccchh-----hhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 676666655444322111000 122233333332 234443 334544443221 2334666777888
Q ss_pred HHHHCCCCCCHHhHH------HHH-----HHHh--ccCchhHHHHHHHHHHh--CCC----CCChhhHHH----------
Q 043480 150 HMIENGIKPDNKACA------ALV-----VGLC--GDGKVDLAYELTVGAMK--GKV----EFGVLIYNA---------- 200 (493)
Q Consensus 150 ~~~~~~~~~~~~~~~------~l~-----~~~~--~~~~~~~a~~~~~~~~~--~~~----~~~~~~~~~---------- 200 (493)
+++...+..=...|. .=+ +-+. ..--+-.|...++++.. .|+ +.+..+++.
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 887643221111111 111 1111 11123456666665543 221 122233332
Q ss_pred -HHHHHHhcC-----C-H-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 043480 201 -LISGFCRTG-----R-I-RRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLL 272 (493)
Q Consensus 201 -l~~~~~~~~-----~-~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 272 (493)
.|..-..++ + . ....-++++...- +.-....|----..+...++-+.|....+. |++..+..-..+.
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~spsL~~~ls 340 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEMSPSLTMFLS 340 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccCCCchheeHH
Confidence 222211111 0 0 0111111111110 011222222222223344555555555443 3332222222333
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcC
Q 043480 273 KGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCK---GGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREG 349 (493)
Q Consensus 273 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 349 (493)
..|.-..+-+.....|++..+. ...--.++.+-+. .|+++.--+++-+-+. .=...|...+.+..+..
T Consensus 341 e~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~~ 411 (660)
T COG5107 341 EYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRKR 411 (660)
T ss_pred HHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHHh
Confidence 4444455555555555554431 0000001111111 1233222222211111 13456777888888888
Q ss_pred CHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHhcCChhHHHHH
Q 043480 350 SSAMAEKLLNQMRGMN-LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVIS-YNALINGLCKSSRVSEAMHL 427 (493)
Q Consensus 350 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~ 427 (493)
..+.|..+|.+..+.+ +.+++.++++++..++ .|+...|..+|+--+.. -||... -+..+.-+...++-+.|..+
T Consensus 412 Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraL 488 (660)
T COG5107 412 GLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARAL 488 (660)
T ss_pred hHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHH
Confidence 8999999999999887 5677888889888766 57888999999876654 344433 35566777788999999999
Q ss_pred HHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhchh
Q 043480 428 YEEMQIRGAHPD--EVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDA 490 (493)
Q Consensus 428 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 490 (493)
|+..+.. +..+ ..+|..+|.--..-|+...+..+-++|.+. .|...+...+.+-|...++
T Consensus 489 Fetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ik~d 550 (660)
T COG5107 489 FETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYAIKAD 550 (660)
T ss_pred HHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHhhhcc
Confidence 9976543 2223 678999999889999999999998888864 6666677666666665544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0001 Score=59.30 Aligned_cols=115 Identities=15% Similarity=0.104 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHH
Q 043480 107 KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGA 186 (493)
Q Consensus 107 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 186 (493)
+.|.++++.+++.+ |.|..++-.-+...-..|+.-+|++-+....+. +..|...|..+...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 44555555555542 344455554444444555555555555555543 3445566666666666666666666666655
Q ss_pred HhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 043480 187 MKGKVEFGVLIYNALISGFCRTG---RIRRAMAIKSFMKWN 224 (493)
Q Consensus 187 ~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 224 (493)
+-.. |.+...+..+...+.-.| +.+.+.++|.+..+.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5443 333444444444333322 345566666666654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00021 Score=63.24 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHhccCchhHHHHHHHH
Q 043480 107 KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD-NKACAALVVGLCGDGKVDLAYELTVG 185 (493)
Q Consensus 107 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 185 (493)
+.|+..++.++.. .+.|+..+......+.+.|+..+|.+.++++... .|+ ......+..++.+.|+..+|+.+++.
T Consensus 323 d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~ 399 (484)
T COG4783 323 DEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNR 399 (484)
T ss_pred chHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 4445555555553 3344445555556666666666666666666654 344 33444555666666666666666666
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 043480 186 AMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMES 258 (493)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (493)
..... +-++..|..|..+|...|+..++..-..+. +...|+++.|...+....+
T Consensus 400 ~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 400 YLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHH
Confidence 65544 445666666666666666666665544332 3345566666665555544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.2e-05 Score=58.84 Aligned_cols=125 Identities=12% Similarity=0.146 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCH--hhHHHHH
Q 043480 338 FTILIKAFLREGSSAMAEKLLNQMRGMNLSPD---RILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDV--ISYNALI 412 (493)
Q Consensus 338 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~ 412 (493)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+.+....|+. .....|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444443 4677777777777777643 233 223334556677788888888888888876422221 2344566
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 413 NGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQM 466 (493)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 466 (493)
..+...|++++|+..++..... ...+..+....++|.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7778888888888888664332 224556777888888888888888888765
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.7e-05 Score=69.35 Aligned_cols=121 Identities=11% Similarity=0.060 Sum_probs=76.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHH
Q 043480 50 FIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYT 129 (493)
Q Consensus 50 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 129 (493)
++..+...++++.|+.+++++.+.. |+ ....+++.+...++- .+|.+++++.+.. .+.+.....
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E-----------~~AI~ll~~aL~~-~p~d~~LL~ 238 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEE-----------VEAIRLLNEALKE-NPQDSELLN 238 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcH-----------HHHHHHHHHHHHh-CCCCHHHHH
Confidence 4445555677777777777776653 33 233455666555554 4555555555543 344555666
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHhccCchhHHHHHHHHHHh
Q 043480 130 IVIDGLCKAKEFDKAVQAWEHMIENGIKPD-NKACAALVVGLCGDGKVDLAYELTVGAMK 188 (493)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (493)
.....+.+.++++.|+++.+++.+. .|+ -.+|..|..+|...|+++.|+-.++.+.-
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 6666777777777777777777765 343 45777777777777777777777776653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.004 Score=59.70 Aligned_cols=422 Identities=13% Similarity=0.115 Sum_probs=232.1
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHH--HHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChh
Q 043480 19 LVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIG--VLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFT 96 (493)
Q Consensus 19 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 96 (493)
....+++.+|++..+.+.++. |+. .|..++. .+.+.|+.++|..+++.....+ ..|..+...+-.+|...++.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~- 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKL- 93 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhh-
Confidence 356689999999999988864 332 2444444 4578999999999888876655 33778888899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccC--
Q 043480 97 LINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDG-- 174 (493)
Q Consensus 97 ~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 174 (493)
+.|..++++... ..|+......+..+|.+-+++.+-.+.=-++-+. ++-+...+-.+++.+...-
T Consensus 94 ----------d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~ 160 (932)
T KOG2053|consen 94 ----------DEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFS 160 (932)
T ss_pred ----------hHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccC
Confidence 667788888876 4566666666777888877766544433333332 2223344444444433211
Q ss_pred --------chhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHccC
Q 043480 175 --------KVDLAYELTVGAMKGK-VEFGVLIYNALISGFCRTGRIRRAMAIKSF-MKWNGCEPDLVTYNAILNYYCDEV 244 (493)
Q Consensus 175 --------~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~ 244 (493)
-..-|.+.++.+.+.+ ..-+..-...-...+...|++++|++++.. ....-...+...-+.-+..+...+
T Consensus 161 ~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~ 240 (932)
T KOG2053|consen 161 ENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLN 240 (932)
T ss_pred CcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhc
Confidence 1234566677776644 111222222234455678889999999843 333323344445556677788889
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHH----------------HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 043480 245 MLDEAEKLVMEMESCGIEPDVYSYNQLLKGL----------------CNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIE 308 (493)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 308 (493)
++.+..++-.++...| +|. |...++.+ ...+..+...+...+..... ....|-+-+.
T Consensus 241 ~w~~l~~l~~~Ll~k~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~le 313 (932)
T KOG2053|consen 241 RWQELFELSSRLLEKG--NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLE 313 (932)
T ss_pred ChHHHHHHHHHHHHhC--Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHH
Confidence 9999999988888776 332 22222211 11222333333333322221 1111222222
Q ss_pred HHH---HcCCHHHHHHHHHHHHHcCCCc-------------CHhHHHHHHHHH------------------------HHc
Q 043480 309 AFC---KGGQTRRAYKLFEGMRRRGIEL-------------DVVTFTILIKAF------------------------LRE 348 (493)
Q Consensus 309 ~~~---~~~~~~~a~~~~~~~~~~~~~~-------------~~~~~~~l~~~~------------------------~~~ 348 (493)
+.. .-|+.+++.-.|-+- -|-.| +......++..+ ...
T Consensus 314 l~kr~~~~gd~ee~~~~y~~k--fg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~ 391 (932)
T KOG2053|consen 314 LDKRYKLIGDSEEMLSYYFKK--FGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLL 391 (932)
T ss_pred HHHHhcccCChHHHHHHHHHH--hCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHh
Confidence 222 235555543322111 11010 000111111111 112
Q ss_pred CC-----HHHHHHHHHHHH---hCC------CCCCHH---------hHHHHHHHHHccCCHhH---HHHHHHHHHhCCCC
Q 043480 349 GS-----SAMAEKLLNQMR---GMN------LSPDRI---------LYTTIIDCLCKSREIGT---AYGVFLDMVEQGIT 402 (493)
Q Consensus 349 ~~-----~~~a~~~~~~~~---~~~------~~~~~~---------~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~ 402 (493)
|. .+....++.+.. ++| .-|+.. +.+.+++.+.+.++... |+-+++..... -+
T Consensus 392 G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~ 470 (932)
T KOG2053|consen 392 GLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SP 470 (932)
T ss_pred hccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CC
Confidence 21 223333333222 122 122322 34567777777777653 33344443333 13
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 403 PDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 403 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
-|..+--.+++.|...|-+..|.++++.+.-+.+.-|..-| .+...+...|++..+...++...+.
T Consensus 471 hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh-~~~~~~~t~g~~~~~s~~~~~~lkf 536 (932)
T KOG2053|consen 471 HNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH-LIFRRAETSGRSSFASNTFNEHLKF 536 (932)
T ss_pred ccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH-HHHHHHHhcccchhHHHHHHHHHHH
Confidence 34455556788888888888888888888655566443333 2445666778888888888777654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.6e-05 Score=58.61 Aligned_cols=128 Identities=12% Similarity=0.157 Sum_probs=79.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcC--hhhHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS---IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLT--PFTYS 83 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~ 83 (493)
...|..++..+ ..++...+...++.+.... +.++ .....+...+...|++++|...|+........++ .....
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 34566666665 4788888888888887764 3332 2233345667778888888888888877642222 23445
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 043480 84 RFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHM 151 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 151 (493)
.+...+...|++ +.|+..++.... .......+......|.+.|++++|...|+..
T Consensus 90 ~LA~~~~~~~~~-----------d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQY-----------DEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCH-----------HHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 566667777777 444455544322 2233445556667777777777777777653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.7e-05 Score=66.17 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=53.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhH
Q 043480 309 AFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGT 388 (493)
Q Consensus 309 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 388 (493)
.+...++++.|.++++++.+.. |+ ....++..+...++..+|.+++.+..+.. +.+...+..-...+.+.++++.
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 3333444555555555554442 22 22234444444444445555554444332 3344444444444455555555
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043480 389 AYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEM 431 (493)
Q Consensus 389 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 431 (493)
|+.+.+++.+. .+-+..+|..|..+|...|+++.|+..++.+
T Consensus 253 AL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 253 ALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555555543 1222335555555555555555555444443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.4e-05 Score=56.58 Aligned_cols=88 Identities=9% Similarity=-0.035 Sum_probs=75.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
.-.+...+...|++++|.++|+.+...+ +.+..-|..+..++-..|++++|+..|......+ +.++..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3457777889999999999999999987 7777888889999999999999999999999887 5778888889999999
Q ss_pred cCChhhHHHH
Q 043480 92 VKNFTLINIL 101 (493)
Q Consensus 92 ~~~~~~a~~~ 101 (493)
.|+.+.|...
T Consensus 116 lG~~~~A~~a 125 (157)
T PRK15363 116 CDNVCYAIKA 125 (157)
T ss_pred cCCHHHHHHH
Confidence 9999554433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.17 E-value=4e-06 Score=46.19 Aligned_cols=34 Identities=50% Similarity=0.981 Sum_probs=30.8
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 043480 126 VTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD 159 (493)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 159 (493)
.+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999998887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.3e-05 Score=59.15 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=79.5
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRV--FSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
+.....+..++..+...|++++|...|+++.+.+..+ ....+..+..++.+.|++++|...+++.++.. +.+...+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 3556678889999999999999999999998754222 24678888999999999999999999998864 34566666
Q ss_pred HHHHHHhccCChhhHHHHHHHH---HHHHHHHHHHHHh
Q 043480 84 RFISGLCEVKNFTLINILLDNM---DKLALEVFHKMVS 118 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~---~~~a~~~~~~~~~ 118 (493)
.+..++...|+...+..-++.. .+.|.+.+++...
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 7777777776654333222111 1445555555544
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.2e-06 Score=45.70 Aligned_cols=33 Identities=36% Similarity=0.595 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 043480 126 VTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKP 158 (493)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 158 (493)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999998877
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.9e-06 Score=45.81 Aligned_cols=31 Identities=58% Similarity=1.065 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 043480 408 YNALINGLCKSSRVSEAMHLYEEMQIRGAHP 438 (493)
Q Consensus 408 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 438 (493)
|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 4444444444444444444444444444444
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0047 Score=53.84 Aligned_cols=176 Identities=13% Similarity=0.027 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHh
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (493)
........+.+..++..|+..+..+++.. |.+..-|.--+..+...|++++|.--.+.-++.. +..+......-+++.
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHL 128 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhh
Confidence 34556678889999999999999999986 5566667777778888899998887776666543 222334555555666
Q ss_pred ccCChhhHHHHHHHHH----HHHHHHHHHHHhCCC-CCCHhhHHHHH-HHHhccCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 043480 91 EVKNFTLINILLDNMD----KLALEVFHKMVSKGR-EPDVVTYTIVI-DGLCKAKEFDKAVQAWEHMIENGIKPDNKACA 164 (493)
Q Consensus 91 ~~~~~~~a~~~~~~~~----~~a~~~~~~~~~~g~-~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 164 (493)
..++..+|.+.++... ..++..++.+..... +|.-.+|-.+- .++.-.|+.++|...--..++.. ..+.....
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~ 207 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALY 207 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHH
Confidence 5665555544443211 122333333322211 12223333332 34555677777776665555542 11223332
Q ss_pred HHHHHHhccCchhHHHHHHHHHHhC
Q 043480 165 ALVVGLCGDGKVDLAYELTVGAMKG 189 (493)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (493)
.-..++.-.++.+.+...|++.+..
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~l 232 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRL 232 (486)
T ss_pred hcccccccccchHHHHHHHhhhhcc
Confidence 2233344556667777777766654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0012 Score=55.51 Aligned_cols=187 Identities=11% Similarity=0.068 Sum_probs=105.4
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhH---HHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDY---NRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
++..+-..+..+.+.|++++|++.|+.+.... |.+.... ..++.++.+.+++++|...+++.++..+......+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 34444456777888999999999999999875 4444443 3456788999999999999999998743322233333
Q ss_pred HHHHHhc--cC---------------ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 043480 85 FISGLCE--VK---------------NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQA 147 (493)
Q Consensus 85 ll~~~~~--~~---------------~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 147 (493)
.+.+.+. .+ +...+ ..|+..|+.+++. -|+. .-..+|...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~--------~~A~~~~~~li~~--yP~S-------------~ya~~A~~r 166 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHA--------RAAFRDFSKLVRG--YPNS-------------QYTTDATKR 166 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHH--------HHHHHHHHHHHHH--CcCC-------------hhHHHHHHH
Confidence 3333321 11 11111 3455555555553 2222 222333333
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 148 WEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGK--VEFGVLIYNALISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
+..+... =..--..+.+.|.+.|.+..|..-++.+++.- .+........++.+|...|..++|......+.
T Consensus 167 l~~l~~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 167 LVFLKDR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3222221 00111144555666666666666666666531 22233445556677777777777766665543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.9e-06 Score=44.57 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043480 442 TFKLLIGGLVQEKKLELACRLWDQMMEKGFTL 473 (493)
Q Consensus 442 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 473 (493)
+|+.++++|.+.|+++.|.++++.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44445555555555555555555554444443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00013 Score=62.93 Aligned_cols=129 Identities=14% Similarity=0.105 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc-cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 043480 337 TFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK-SREIGTAYGVFLDMVEQGITPDVISYNALINGL 415 (493)
Q Consensus 337 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 415 (493)
+|..++...-+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|..+|+..++. ++.+...|...+.-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34455555555555556666665555432 2233334333333222 34444566666655544 344555555555555
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 416 CKSSRVSEAMHLYEEMQIRGAHPD---EVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
...|+.+.|..+|++.... +.++ ...|...++--.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5566666666666665443 2211 23555555555566666666666655554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.3e-05 Score=53.12 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHh
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (493)
++..++..+...|++++|.+.++++.+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 46678889999999999999999998875 5556778888999999999999999999988765 445567888888888
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHh
Q 043480 91 EVKNFTLINILLDNMDKLALEVFHKMVS 118 (493)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~a~~~~~~~~~ 118 (493)
..|++ +.|...+.....
T Consensus 80 ~~~~~-----------~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKY-----------EEALEAYEKALE 96 (100)
T ss_pred HHHhH-----------HHHHHHHHHHHc
Confidence 88988 455555655543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00015 Score=57.50 Aligned_cols=106 Identities=11% Similarity=0.046 Sum_probs=79.0
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRV--FSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
...|..++..+...|++++|+..|+++......+ ...+|..+..++...|++++|+..+++..... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4567888889999999999999999998654222 23578888999999999999999999998763 33445566666
Q ss_pred HHHh-------ccCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 87 SGLC-------EVKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 87 ~~~~-------~~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
..+. ..|+++.|...+ ++|..++++....
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~----~~a~~~~~~a~~~ 149 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWF----DQAAEYWKQAIAL 149 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHH----HHHHHHHHHHHHh
Confidence 6666 667776666555 5566777777553
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00012 Score=54.31 Aligned_cols=99 Identities=10% Similarity=0.047 Sum_probs=78.3
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC--cChhhHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF---SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFS--LTPFTYS 83 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~ 83 (493)
+.++..++..+.+.|++++|.+.|+.+.+.. +.+ ...+..+..++.+.|++++|...|+.+...... ..+..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 3467788999999999999999999998764 222 346677889999999999999999999875322 1245677
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 84 RFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
.+..++...++. +.|...++++...
T Consensus 81 ~~~~~~~~~~~~-----------~~A~~~~~~~~~~ 105 (119)
T TIGR02795 81 KLGMSLQELGDK-----------EKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHhCCh-----------HHHHHHHHHHHHH
Confidence 788888899999 6667777777775
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00012 Score=65.57 Aligned_cols=123 Identities=14% Similarity=0.138 Sum_probs=80.3
Q ss_pred CCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhH
Q 043480 331 IELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM--NLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISY 408 (493)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 408 (493)
.+.+......++..+....+.+.+..++-+.+.. ....-..+..++++.|...|..+.+..+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3446666666777666666677777776666643 11122234457777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043480 409 NALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQE 453 (493)
Q Consensus 409 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 453 (493)
+.||+.+.+.|++..|.++...|...+...++.|+..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777766555555666666555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.08 E-value=8e-05 Score=64.21 Aligned_cols=144 Identities=12% Similarity=0.133 Sum_probs=106.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIR-HSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
+.+|..++++.-+.+..+.|+.+|+++++.+ ..+..+|...+..-.. .++.+.|..+|+...+. ++.+...|...+.
T Consensus 1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 3678999999999999999999999998654 4456666666666444 56666799999999876 4667788888899
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDV---VTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACA 164 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 164 (493)
.+...++. +.+..+|++.+.. .+++. ..|...+..-.+.|+.+.+..+.+++.+. .|+...+.
T Consensus 79 ~l~~~~d~-----------~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~ 144 (280)
T PF05843_consen 79 FLIKLNDI-----------NNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLE 144 (280)
T ss_dssp HHHHTT-H-----------HHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHH
T ss_pred HHHHhCcH-----------HHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHH
Confidence 99999988 6677888888765 33333 58999999999999999999999998875 34444444
Q ss_pred HHHH
Q 043480 165 ALVV 168 (493)
Q Consensus 165 ~l~~ 168 (493)
.+..
T Consensus 145 ~f~~ 148 (280)
T PF05843_consen 145 LFSD 148 (280)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 4443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00012 Score=65.51 Aligned_cols=124 Identities=14% Similarity=0.131 Sum_probs=98.5
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhH
Q 043480 260 GIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGL--RDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVT 337 (493)
Q Consensus 260 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 337 (493)
+.+.+......+++.+....+++.+..++.+....... .-+.+..++++.|.+.|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44567777888888888888888888888887765222 2345567899999999999999999999888999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc
Q 043480 338 FTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKS 383 (493)
Q Consensus 338 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (493)
++.++..+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988888766666667766666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0007 Score=51.11 Aligned_cols=89 Identities=10% Similarity=-0.051 Sum_probs=45.6
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043480 379 CLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLEL 458 (493)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 458 (493)
.+...|++++|..+|+-+.... +.+..-|-.|.-++-..|++++|+..+......++. |+..+..+..++...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHH
Confidence 3344555555555555555432 223344445555555555555555555555543321 45555555555555555555
Q ss_pred HHHHHHHHHHc
Q 043480 459 ACRLWDQMMEK 469 (493)
Q Consensus 459 a~~~~~~~~~~ 469 (493)
|.+.|+..+..
T Consensus 122 A~~aF~~Ai~~ 132 (157)
T PRK15363 122 AIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00049 Score=59.71 Aligned_cols=206 Identities=9% Similarity=0.081 Sum_probs=114.8
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhC----CCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHhccC----CCCcC-
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQS----NCRVF-SIDYNRFIGVLIRHSRFDLVQFYYQQMHPL----GFSLT- 78 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~- 78 (493)
...|...+..|-..|++++|.+.|.+..+. +-+.. ...|......+ +..++++|+..+++.... | .++
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G-~~~~ 112 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAG-RFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT--HHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcC-cHHH
Confidence 456888889999999999999999876432 21111 22233334444 444888888888877653 2 232
Q ss_pred -hhhHHHHHHHHhcc-CChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 043480 79 -PFTYSRFISGLCEV-KNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGI 156 (493)
Q Consensus 79 -~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 156 (493)
..++..+...|... ++++.|...+ ++|.++|+.--. ...-...+..+...+.+.|++++|.++|++....-.
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y----~~A~~~y~~e~~--~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYY----QKAAELYEQEGS--PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHH----HHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHH----HHHHHHHHHCCC--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 24566677777777 7887766666 344555543311 011234566777888888888888888888776432
Q ss_pred CC-----CH-HhHHHHHHHHhccCchhHHHHHHHHHHhCC--CCCC--hhhHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 043480 157 KP-----DN-KACAALVVGLCGDGKVDLAYELTVGAMKGK--VEFG--VLIYNALISGFCRT--GRIRRAMAIKSFMK 222 (493)
Q Consensus 157 ~~-----~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~--~~~~~a~~~~~~~~ 222 (493)
.. +. ..+...+-++...|+...|.+.++...... ...+ ......|+.++-.. ..+..++.-|+.+.
T Consensus 187 ~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 187 ENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp CHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred cccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 21 11 122334445556677777777777766432 1111 22334455555432 23555555555544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00021 Score=64.09 Aligned_cols=94 Identities=12% Similarity=0.037 Sum_probs=81.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhcc
Q 043480 13 RAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEV 92 (493)
Q Consensus 13 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 92 (493)
...+..+...|++++|++.|+++++.+ +.+...|..+..++...|++++|+..+++++... +.+...|..+..+|...
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 345778889999999999999999987 7778889999999999999999999999999875 45677888899999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 93 KNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 93 ~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
|++ +.|+..|++.+..
T Consensus 84 g~~-----------~eA~~~~~~al~l 99 (356)
T PLN03088 84 EEY-----------QTAKAALEKGASL 99 (356)
T ss_pred CCH-----------HHHHHHHHHHHHh
Confidence 999 6677778887774
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00055 Score=50.64 Aligned_cols=97 Identities=11% Similarity=0.015 Sum_probs=54.8
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 043480 373 YTTIIDCLCKSREIGTAYGVFLDMVEQGIT--PDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP--DEVTFKLLIG 448 (493)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~ 448 (493)
+...+..+...|++++|...+..+.+.... .....+..+..++...|+++.|...++.+....... ...++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 444555556666666666666666643110 012344456666666666666666666665532111 2445556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 043480 449 GLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~ 469 (493)
++.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.9e-05 Score=54.08 Aligned_cols=81 Identities=17% Similarity=0.175 Sum_probs=52.1
Q ss_pred cCCHhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043480 383 SREIGTAYGVFLDMVEQGIT-PDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACR 461 (493)
Q Consensus 383 ~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 461 (493)
.|+++.|+.+++++.+.... |+...+..+..+|.+.|++++|..++++ .+.+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46777888888887765321 1344455577788888888888888877 32211 134555566777888888888888
Q ss_pred HHHH
Q 043480 462 LWDQ 465 (493)
Q Consensus 462 ~~~~ 465 (493)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.3e-05 Score=49.82 Aligned_cols=59 Identities=20% Similarity=0.311 Sum_probs=52.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL 73 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (493)
.++..+.+.|++++|++.|+++++.. |.+...+..+..++...|++++|...|+++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36788999999999999999999987 778889999999999999999999999999875
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00044 Score=61.98 Aligned_cols=91 Identities=15% Similarity=0.035 Sum_probs=64.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 043480 342 IKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRV 421 (493)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 421 (493)
...+...|+++.|+..|+.+.+.. +.+...|..+..+|...|++++|...++++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 445556777777777777777655 4566677777777777777777777777777652 33556677777777777777
Q ss_pred hHHHHHHHHHHHc
Q 043480 422 SEAMHLYEEMQIR 434 (493)
Q Consensus 422 ~~a~~~~~~~~~~ 434 (493)
++|+..|++..+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777764
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.6e-05 Score=51.04 Aligned_cols=65 Identities=8% Similarity=0.077 Sum_probs=59.2
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHhccC
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHS-RFDLVQFYYQQMHPL 73 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 73 (493)
++.+|..++..+...|++++|+..|++.++.+ |.++..|..+..++...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 57889999999999999999999999999987 778889999999999999 799999999998764
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.9e-05 Score=54.00 Aligned_cols=80 Identities=10% Similarity=0.110 Sum_probs=58.6
Q ss_pred cCChhHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHH
Q 043480 22 AGLIDQAVHVFDEMTQSNCR-VFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINI 100 (493)
Q Consensus 22 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 100 (493)
+|+++.|+.+|+++.+..+. ++...+..+..++.+.|++++|..+++. .+.+ +.+......+..++...|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 68999999999999987632 2455566689999999999999999998 3332 2233455566899999999966665
Q ss_pred HHH
Q 043480 101 LLD 103 (493)
Q Consensus 101 ~~~ 103 (493)
.++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.1e-05 Score=49.91 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=53.1
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 19 LVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 19 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
+.+.|++++|+++|+++.+.. |.+...+..++.++.+.|++++|..+++++... .|+...|..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 357899999999999999986 778888999999999999999999999999887 4554444433
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.014 Score=51.62 Aligned_cols=438 Identities=14% Similarity=0.140 Sum_probs=229.6
Q ss_pred HHHHcCChhHHHHHHHHHhhCCCCCChhh------HHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHH--
Q 043480 18 NLVKAGLIDQAVHVFDEMTQSNCRVFSID------YNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGL-- 89 (493)
Q Consensus 18 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-- 89 (493)
.+.+++++.+|.++|.++-+.- ..++.. -+.++++|... +.+.-...+....+. .| ...|..+..+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 3467899999999999987753 333333 34566776543 444444444444443 23 33455555443
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHHHHHhC--CCC------------CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 043480 90 CEVKNFTLINILLDNMDKLALEVFHKMVSK--GRE------------PDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG 155 (493)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~--g~~------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (493)
-+.+.+..|. +.+....+. +.. +|...=+..+..+...|++.++..+++++...=
T Consensus 90 Y~~k~~~kal-----------~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 90 YKQKEYRKAL-----------QALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred HHhhhHHHHH-----------HHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3567775554 333333222 111 122333456778889999999999999987642
Q ss_pred C----CCCHHhHHHHHHHHhccCch--------hHHHHHHH-------HHHh------CCCCCChhhHHHHHHHHHhcC-
Q 043480 156 I----KPDNKACAALVVGLCGDGKV--------DLAYELTV-------GAMK------GKVEFGVLIYNALISGFCRTG- 209 (493)
Q Consensus 156 ~----~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~-------~~~~------~~~~~~~~~~~~l~~~~~~~~- 209 (493)
. .-+..+|+.++-.+.++--+ +-.-+.++ ++.. ..+.|.......++....-..
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~ 238 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK 238 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH
Confidence 2 35778888866655543111 11111111 1110 011222222222222211110
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHCCCCC----ChhhHHHHHHHHHccCCHHH
Q 043480 210 -RIRRAMAIKSFMKWNGCEPDLV-TYNAILNYYCDEVMLDEAEKLVMEMESCGIEP----DVYSYNQLLKGLCNSNQLDK 283 (493)
Q Consensus 210 -~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~ 283 (493)
+..--..+++.-...-+.|+.. ....+...+.. +.+++..+.+.+....+.+ -..+|..++....+.++...
T Consensus 239 e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~ 316 (549)
T PF07079_consen 239 ERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEE 316 (549)
T ss_pred hhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 0111111111112222333322 22333333333 5556666655554432211 23467777777888888888
Q ss_pred HHHHHHHHHHcCCCCChhh------HHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcC-HhH-HHHHHHHHHHcCC-
Q 043480 284 AYMFMVKKMEAKGLRDKVS------YNTVIEAFCK----GGQTRRAYKLFEGMRRRGIELD-VVT-FTILIKAFLREGS- 350 (493)
Q Consensus 284 a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~-~~~l~~~~~~~~~- 350 (493)
|...+.-...-.+... .+ -..+-+..+. ..+...-+.+|+.....++... .+. .-.-..-+-+.|.
T Consensus 317 a~q~l~lL~~ldp~~s-vs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~ 395 (549)
T PF07079_consen 317 AKQYLALLKILDPRIS-VSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQC 395 (549)
T ss_pred HHHHHHHHHhcCCcch-hhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCc
Confidence 8777665554433211 11 1112222221 1223344556666655533211 111 1112223445555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHH----HHHHc---cCCHhHHHHHHHHHHhCCCCCCHh----hHHHHHHH--HHh
Q 043480 351 SAMAEKLLNQMRGMNLSPDRILYTTII----DCLCK---SREIGTAYGVFLDMVEQGITPDVI----SYNALING--LCK 417 (493)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~--~~~ 417 (493)
-++|.++++.+.+.. +-|...-|.+. .+|.+ ...+.+-..+-+-+.+.|++|-.. .-|.|.++ +..
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 889999999988743 33443333332 22322 223444444444555678777543 34444433 456
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043480 418 SSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALI 482 (493)
Q Consensus 418 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 482 (493)
.|++.++.-.-..+.+ +.|++.+|..+.-.+....++++|..++..+ +|+..++++=+
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskv 532 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSKV 532 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHHH
Confidence 8999998876666655 6899999999999999999999999998876 67777666543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00032 Score=49.39 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=43.3
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043480 376 IIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKK 455 (493)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 455 (493)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++........ +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHh
Confidence 3444444555555555555554431 222234444455555555555555555555443211 33444555555555555
Q ss_pred HHHHHHHHHHHH
Q 043480 456 LELACRLWDQMM 467 (493)
Q Consensus 456 ~~~a~~~~~~~~ 467 (493)
++.|...++...
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0065 Score=52.78 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=40.3
Q ss_pred HHHcc-CCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----CHh-HHHHH
Q 043480 274 GLCNS-NQLDKAYMFMVKKMEAKGLRD-----KVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIEL-----DVV-TFTIL 341 (493)
Q Consensus 274 ~~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~~~l 341 (493)
.|... |+++.|++.|.+........+ ...+..+...+.+.|++++|.++|+++....... +.. .+...
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 555555555555443211000 1123344555666666666666666665432211 111 12222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 043480 342 IKAFLREGSSAMAEKLLNQMRG 363 (493)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~ 363 (493)
+-++...||...|.+.+++...
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 3344455666666666666654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00024 Score=58.89 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=52.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChhH
Q 043480 345 FLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD-VISYNALINGLCKSSRVSE 423 (493)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 423 (493)
..+.+++.+|+..|...++.. +.|.+.|..=..+|.+.|.++.|.+-.+..+.. .|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 344556666666666666554 445555555556666666666666655555543 222 3455666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHH
Q 043480 424 AMHLYEEMQIRGAHPDEVTF 443 (493)
Q Consensus 424 a~~~~~~~~~~~~~p~~~~~ 443 (493)
|++.|++.++ +.|+-.+|
T Consensus 168 A~~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHHHHhhhc--cCCCcHHH
Confidence 6666666555 34544443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0011 Score=55.34 Aligned_cols=101 Identities=10% Similarity=0.061 Sum_probs=80.7
Q ss_pred CCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHH
Q 043480 367 SPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSS---RVSEAMHLYEEMQIRGAHPDEVTF 443 (493)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~ 443 (493)
+-|...|..|...|...|+.+.|...|.+..+. -++|...+..+..++..+. ...++.++|+++...+.. |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 678888999999999999999999999988876 3556777777777666543 456788899998875433 78888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 444 KLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 444 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
..|...+...|++.+|...|+.|++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 88888899999999999999999875
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.015 Score=50.98 Aligned_cols=105 Identities=21% Similarity=0.246 Sum_probs=61.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHH
Q 043480 233 YNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCK 312 (493)
Q Consensus 233 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (493)
.+..+.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-..+... ..++..|...+.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3444555556666666666655443 36666666777777777777665443211 2355667777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHH
Q 043480 313 GGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKL 357 (493)
Q Consensus 313 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 357 (493)
.|+..+|..+...+ ++..-+..|.+.|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 77777766665551 113445556666666666544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00034 Score=48.78 Aligned_cols=74 Identities=15% Similarity=0.385 Sum_probs=38.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccC--------CHhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 043480 343 KAFLREGSSAMAEKLLNQMRGMNL-SPDRILYTTIIDCLCKSR--------EIGTAYGVFLDMVEQGITPDVISYNALIN 413 (493)
Q Consensus 343 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 413 (493)
..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+|+.|+..+++|+..+|+.++.
T Consensus 33 ~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~ 112 (120)
T PF08579_consen 33 NSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLG 112 (120)
T ss_pred HHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 333444566666666666666555 556666666655554321 12234455555555555555555555555
Q ss_pred HHH
Q 043480 414 GLC 416 (493)
Q Consensus 414 ~~~ 416 (493)
.+.
T Consensus 113 ~Ll 115 (120)
T PF08579_consen 113 SLL 115 (120)
T ss_pred HHH
Confidence 443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0023 Score=60.09 Aligned_cols=136 Identities=11% Similarity=0.003 Sum_probs=74.4
Q ss_pred CCcCHhHHHHHHHHHHH--c---CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC--------CHhHHHHHHHHHH
Q 043480 331 IELDVVTFTILIKAFLR--E---GSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSR--------EIGTAYGVFLDMV 397 (493)
Q Consensus 331 ~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~ 397 (493)
.+.+...|...+.+... . ++...|..+|++..+.. +.....|..+..++.... +...+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34455666666555432 1 22556666666666653 333344444333332211 1223333333333
Q ss_pred hC-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 398 EQ-GITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 398 ~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.. ..+.+...|..+.-.+...|++++|...++++... .|+...|..+...+...|+.++|...++++.+.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 21 12334455666655555667777777777777764 356667777777777777777777777777654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00095 Score=55.82 Aligned_cols=120 Identities=9% Similarity=0.127 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHH
Q 043480 25 IDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDN 104 (493)
Q Consensus 25 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 104 (493)
.+....-++.-+..+ |.|...|-.|..+|..+|++..|..-|.+..+.. .+++..+..+..++....+...-
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~t------ 209 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMT------ 209 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCccc------
Confidence 344444455555555 7888899999999999999999999999988874 56777777777666544322111
Q ss_pred HHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 043480 105 MDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG 155 (493)
Q Consensus 105 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (493)
.++..+|++++.. .+.|+.+...|...+...|++.+|...|+.|.+..
T Consensus 210 --a~a~~ll~~al~~-D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 210 --AKARALLRQALAL-DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred --HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 5788888888886 45577778888888999999999999999999863
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.1e-05 Score=41.09 Aligned_cols=31 Identities=42% Similarity=0.859 Sum_probs=26.4
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 043480 126 VTYTIVIDGLCKAKEFDKAVQAWEHMIENGI 156 (493)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 156 (493)
.+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3788899999999999999999999988763
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00059 Score=47.60 Aligned_cols=88 Identities=18% Similarity=0.273 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCC-CcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Q 043480 47 YNRFIGVLIRHSRFDLVQFYYQQMHPLGF-SLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDV 125 (493)
Q Consensus 47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~ 125 (493)
....|.-+...+++...-.+|+.+.+.|+ -|+..+|+.++.+.++..--. .-.+.-.-..+.+++.|+..+.+|+.
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~---~~ie~kl~~LLtvYqDiL~~~lKP~~ 104 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS---EDIENKLTNLLTVYQDILSNKLKPND 104 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc---hhHHHHHHHHHHHHHHHHHhccCCcH
Confidence 34456667777999999999999999998 899999999998887654322 11222225678899999988899999
Q ss_pred hhHHHHHHHHhc
Q 043480 126 VTYTIVIDGLCK 137 (493)
Q Consensus 126 ~~~~~l~~~~~~ 137 (493)
.+|+.++..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.014 Score=49.10 Aligned_cols=58 Identities=10% Similarity=0.002 Sum_probs=44.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 410 ALINGLCKSSRVSEAMHLYEEMQIRG--AHPDEVTFKLLIGGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 410 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 467 (493)
.+.+-|.+.|.+..|..-++.+.+.- .+........++.+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 44566888899999999898887642 22246777788899999999999988877664
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00093 Score=52.96 Aligned_cols=95 Identities=14% Similarity=0.058 Sum_probs=56.5
Q ss_pred HHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHH
Q 043480 370 RILYTTIIDCLCKSREIGTAYGVFLDMVEQGITP--DVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLL 446 (493)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l 446 (493)
...|..+...+...|++++|...+++.+.....| ...++..+..++...|++++|+..+++.... .| ....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 3445555666666677777777777776542121 1235666777777777777777777777653 22 34555555
Q ss_pred HHHHH-------hcCCHHHHHHHHHHH
Q 043480 447 IGGLV-------QEKKLELACRLWDQM 466 (493)
Q Consensus 447 ~~~~~-------~~g~~~~a~~~~~~~ 466 (493)
...+. ..|+++.|...+++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 55555 667766554444433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0013 Score=61.83 Aligned_cols=141 Identities=10% Similarity=-0.083 Sum_probs=92.5
Q ss_pred CCCChhhHHHHHHHHHh--cCC---hhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCC---h-hhHHHHHHHHHHHHH
Q 043480 40 CRVFSIDYNRFIGVLIR--HSR---FDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKN---F-TLINILLDNMDKLAL 110 (493)
Q Consensus 40 ~~~~~~~~~~l~~~~~~--~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~-~~a~~~~~~~~~~a~ 110 (493)
.+.+...|...+++... .++ ...|+.+|++.++.. +.....+..+..++..... . +... ..+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l-------~~a~ 404 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQL-------AALS 404 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHH-------HHHH
Confidence 46777888877766433 222 568888888888763 2233444443333322111 1 1111 2333
Q ss_pred HHHHHHHhC-CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhC
Q 043480 111 EVFHKMVSK-GREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKG 189 (493)
Q Consensus 111 ~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (493)
+...+.... ..+.+...|..+.......|++++|...+++....+ |+..+|..+...+...|+.++|.+.+.+....
T Consensus 405 ~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 405 TELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444443332 134455777777777777899999999999999874 68888999999999999999999999998876
Q ss_pred C
Q 043480 190 K 190 (493)
Q Consensus 190 ~ 190 (493)
.
T Consensus 483 ~ 483 (517)
T PRK10153 483 R 483 (517)
T ss_pred C
Confidence 4
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0026 Score=50.64 Aligned_cols=83 Identities=11% Similarity=0.027 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 043480 337 TFTILIKAFLREGSSAMAEKLLNQMRGMNLSPD--RILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALING 414 (493)
Q Consensus 337 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 414 (493)
.+..+...+...|++++|...|++..+....+. ...+..+...+...|++++|...+.+.++.. +-+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444555555666666666655554321111 2345555555555555555555555555431 1133344444444
Q ss_pred HHhcCC
Q 043480 415 LCKSSR 420 (493)
Q Consensus 415 ~~~~g~ 420 (493)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 544444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.9e-05 Score=40.69 Aligned_cols=29 Identities=34% Similarity=0.605 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043480 442 TFKLLIGGLVQEKKLELACRLWDQMMEKG 470 (493)
Q Consensus 442 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 470 (493)
+|+.++++|.+.|++++|.+++++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34555555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00037 Score=57.83 Aligned_cols=102 Identities=14% Similarity=0.189 Sum_probs=84.3
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCCh
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNF 95 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 95 (493)
..-..+.+++.+|+..|.++++.+ |.|++-|.--..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 345678899999999999999987 7788888889999999999999999999998865 44567999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043480 96 TLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVI 132 (493)
Q Consensus 96 ~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 132 (493)
..|++.|++.+. +.|+-.+|-.=+
T Consensus 166 -----------~~A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 166 -----------EEAIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred -----------HHHHHHHHhhhc--cCCCcHHHHHHH
Confidence 566677777776 567666554433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00021 Score=46.51 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=38.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043480 416 CKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAAL 481 (493)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 481 (493)
...|++++|+++|+++....+. +...+..++.+|.+.|++++|.++++++... .|+...+..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 3456667777777776654322 5666666677777777777777777766654 4554444443
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.029 Score=49.12 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 043480 336 VTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGL 415 (493)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 415 (493)
.+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-..+... . -++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence 455666777788899998888877665 68999999999999999999988776432 1 1347799999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043480 416 CKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQ 465 (493)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 465 (493)
.+.|+..+|..++.++ + + ..-+..|.++|++.+|.+.--+
T Consensus 248 ~~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999988872 2 2 3456678888888888766433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.016 Score=44.72 Aligned_cols=132 Identities=15% Similarity=0.101 Sum_probs=80.3
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCC
Q 043480 41 RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKG 120 (493)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g 120 (493)
.|++..-..+..++.+.|++.+|...|++...--+..|+.....+.++....+++ ..|...++++.+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~-----------A~a~~tLe~l~e~~ 154 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF-----------AAAQQTLEDLMEYN 154 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH-----------HHHHHHHHHHhhcC
Confidence 3555555566777777777777777777776654556666677777777777777 44455555554431
Q ss_pred C-CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHH
Q 043480 121 R-EPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVG 185 (493)
Q Consensus 121 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 185 (493)
. -.++.+...+.+.+...|.+.+|...|+..... -|+..........+.++|+.+++..-+..
T Consensus 155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 0 012234445566777777777777777777764 45555544445555666666655544333
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0038 Score=45.45 Aligned_cols=107 Identities=16% Similarity=0.164 Sum_probs=69.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHhccCchhHHHHHHHHHHhCCCC--CChhhHHHHHHHHH
Q 043480 131 VIDGLCKAKEFDKAVQAWEHMIENGIKPD--NKACAALVVGLCGDGKVDLAYELTVGAMKGKVE--FGVLIYNALISGFC 206 (493)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 206 (493)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667778889999999998888776544 345666777788888888888888887764211 12222223344566
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043480 207 RTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYC 241 (493)
Q Consensus 207 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 241 (493)
..|+.++|++.+-.... ++...|..-|..|+
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 77888888877766552 33335555555543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00036 Score=44.91 Aligned_cols=57 Identities=18% Similarity=0.238 Sum_probs=35.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 412 INGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
...+...|++++|...|+++.+.... +...+..+..++...|++++|..+++++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44566666777777777776665321 5666666666677777777777777666643
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0021 Score=51.11 Aligned_cols=86 Identities=23% Similarity=0.360 Sum_probs=53.4
Q ss_pred CHhHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc----------------CCHhHHHHH
Q 043480 334 DVVTFTILIKAFLR-----EGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKS----------------REIGTAYGV 392 (493)
Q Consensus 334 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~ 392 (493)
+..+|..++..|.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+. .+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44445445444432 344555555555555555555666666655555331 234567888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 043480 393 FLDMVEQGITPDVISYNALINGLCKSS 419 (493)
Q Consensus 393 ~~~~~~~~~~p~~~~~~~l~~~~~~~g 419 (493)
+++|...|+-||..++..++..+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 888888888888888888888885544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.063 Score=50.47 Aligned_cols=195 Identities=10% Similarity=0.044 Sum_probs=101.2
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHH----------HHHhcCChhHHHHHHHHhccCC
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIG----------VLIRHSRFDLVQFYYQQMHPLG 74 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~a~~~~~~~~~~~ 74 (493)
..|.|.+|..|+......-.++.|...|-+... -+....-..+-. .-.--|++++|.++|-++-++.
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 467888999888888888888888887765432 111211111111 1122478888888888875542
Q ss_pred CCcChhhHHHHHHHHhccCChhhHHHHHHHHH-----HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 043480 75 FSLTPFTYSRFISGLCEVKNFTLINILLDNMD-----KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWE 149 (493)
Q Consensus 75 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 149 (493)
+ .+....+.|++-...+++..-- +.-...|+.+-. ...+...|......|...|+.+.-.+.+-
T Consensus 765 L---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~--~fa~~~~We~A~~yY~~~~~~e~~~ecly 833 (1189)
T KOG2041|consen 765 L---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGE--TFAEMMEWEEAAKYYSYCGDTENQIECLY 833 (1189)
T ss_pred h---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccchHhHHHHHH
Confidence 1 2233344444432222221100 111222222221 11233445555566666666554433332
Q ss_pred HHHH--------CCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 150 HMIE--------NGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFM 221 (493)
Q Consensus 150 ~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 221 (493)
.+.. ..++-+....-.+..++.+.|.-++|.+.|-+... | ...+..|...++|.+|.++-+..
T Consensus 834 ~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 834 RLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 2211 12344556666677777777777777766544321 1 12345566667777777665554
Q ss_pred H
Q 043480 222 K 222 (493)
Q Consensus 222 ~ 222 (493)
.
T Consensus 905 ~ 905 (1189)
T KOG2041|consen 905 Q 905 (1189)
T ss_pred c
Confidence 3
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00042 Score=45.88 Aligned_cols=58 Identities=9% Similarity=0.027 Sum_probs=53.5
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG 74 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (493)
...|.+.++++.|+++++.+...+ |.++..|.....++...|++++|...|+...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467899999999999999999987 7788899999999999999999999999999874
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0027 Score=55.16 Aligned_cols=271 Identities=12% Similarity=-0.031 Sum_probs=164.3
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHhcc--C--CC-CcChhhHHHHH
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFS----IDYNRFIGVLIRHSRFDLVQFYYQQMHP--L--GF-SLTPFTYSRFI 86 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~--~~-~~~~~~~~~ll 86 (493)
..-+++.|+...-+.+|+.+++.| .-|. .+|..+..+|.-.++|++|+++...=+. + |- .-....-..|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 356799999999999999999887 3333 3466667777788889999877533211 0 10 11122233455
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC--------------------HHHHHH
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKE--------------------FDKAVQ 146 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~ 146 (493)
..+-..|.+++|...-.+-.+-|.++=+++.+ ...+-.+..+|...|+ ++.|.+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e------~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLE------SRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhh------hHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 55666677877776555555555555555533 2334445566655442 344555
Q ss_pred HHHHHHH----CCCC-CCHHhHHHHHHHHhccCchhHHHHHHHHHHh----CCC-CCChhhHHHHHHHHHhcCCHHHHHH
Q 043480 147 AWEHMIE----NGIK-PDNKACAALVVGLCGDGKVDLAYELTVGAMK----GKV-EFGVLIYNALISGFCRTGRIRRAMA 216 (493)
Q Consensus 147 ~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 216 (493)
.|.+-++ .|-. .--.+|..|...|.-.|+++.|+...+.-+. .|- ......+..+..+++-.|+++.|.+
T Consensus 177 fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~e 256 (639)
T KOG1130|consen 177 FYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIE 256 (639)
T ss_pred HHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHH
Confidence 5543221 1100 0124566667777778999999887765443 221 1123467778888999999999998
Q ss_pred HHHHHHHCCC-----CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC----C-CCCChhhHHHHHHHHHccCCHHHHHH
Q 043480 217 IKSFMKWNGC-----EPDLVTYNAILNYYCDEVMLDEAEKLVMEMESC----G-IEPDVYSYNQLLKGLCNSNQLDKAYM 286 (493)
Q Consensus 217 ~~~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 286 (493)
.|+......+ .....+.-++.+.|.-..++++|+.++.+-... + ..-....+-++..+|...|..++|+.
T Consensus 257 hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 257 HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 8877543211 112233445667777777888888877663321 1 11234456678888888888888887
Q ss_pred HHHHHHH
Q 043480 287 FMVKKME 293 (493)
Q Consensus 287 ~~~~~~~ 293 (493)
+.+...+
T Consensus 337 fae~hl~ 343 (639)
T KOG1130|consen 337 FAELHLR 343 (639)
T ss_pred HHHHHHH
Confidence 7666554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0035 Score=45.62 Aligned_cols=87 Identities=7% Similarity=-0.089 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcC----hhhHHH
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF--SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLT----PFTYSR 84 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ 84 (493)
+...+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++..... |+ ......
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHH
Confidence 445678889999999999999999999875443 3345567788999999999999999998753 33 222233
Q ss_pred HHHHHhccCChhhHH
Q 043480 85 FISGLCEVKNFTLIN 99 (493)
Q Consensus 85 ll~~~~~~~~~~~a~ 99 (493)
+.-++...|+.++|.
T Consensus 81 ~Al~L~~~gr~~eAl 95 (120)
T PF12688_consen 81 LALALYNLGRPKEAL 95 (120)
T ss_pred HHHHHHHCCCHHHHH
Confidence 344667789995544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00055 Score=44.67 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=44.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 043480 404 DVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEK-KLELACRLWDQMME 468 (493)
Q Consensus 404 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 468 (493)
+..+|..+...+...|++++|+..|++..+.+.. +...|..+..++...| ++++|.+.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456677777777777777777777777765322 5667777777777777 57777777777765
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.039 Score=45.29 Aligned_cols=133 Identities=11% Similarity=0.061 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHH-----H
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTT-----I 376 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 376 (493)
.-+.++..+.-.|.+.-.+..+.+.++...+.++...+.+.+.-.+.||.+.|...|++..+..-..+....+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34556666667788888888999988887777888888888888889999999999997775322333333333 3
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 043480 377 IDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRG 435 (493)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (493)
...|.-.+++..|...+.++.... +.|+...|.-.-+..-.|+..+|++.++.|....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 334455677888888888887653 3355555555555566788999999999998753
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.055 Score=50.34 Aligned_cols=103 Identities=12% Similarity=0.200 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHH
Q 043480 316 TRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLD 395 (493)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 395 (493)
.+-+.++-+++... +..+...+...+.+...+..|.++|..|-+ ...+++.....+++.+|..+-++
T Consensus 732 ~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 732 VDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred HHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhh
Confidence 34444444444332 444555555555566667777777776643 23456666777788888777776
Q ss_pred HHhCCCCCCHh-----------hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 396 MVEQGITPDVI-----------SYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 396 ~~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
..+. .||.. -|...-.+|.++|+..+|.++++++..
T Consensus 799 hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 799 HPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred Cccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 6653 33322 133344567778888888888888754
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.026 Score=46.23 Aligned_cols=66 Identities=8% Similarity=0.087 Sum_probs=48.8
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF---SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG 74 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (493)
++..+-..+..+...|++++|++.|+.+...- |.+ ......++.++.+.|++++|...+++.++.-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44555567888899999999999999998763 322 3345567788999999999999999998763
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.071 Score=46.87 Aligned_cols=155 Identities=12% Similarity=0.023 Sum_probs=90.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHH-----------
Q 043480 273 KGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTIL----------- 341 (493)
Q Consensus 273 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----------- 341 (493)
.++.-.|++++|...-...++.... +......-..++...++.+.+...|++..+.+ |+...-...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHH
Confidence 3455667777776665555554221 21111111223334566677777777666542 332221111
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHh---hHHHHHH
Q 043480 342 --IKAFLREGSSAMAEKLLNQMRGM---NLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVI---SYNALIN 413 (493)
Q Consensus 342 --~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~ 413 (493)
..-..+.|++..|.+.+.+.+.. ++.++...|.....+..+.|+.++|+.--++..+. |.. .+..-..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~ 329 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRAN 329 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHH
Confidence 12235678888888888887753 34555666777777777888888888877777653 322 2222334
Q ss_pred HHHhcCChhHHHHHHHHHHHc
Q 043480 414 GLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 414 ~~~~~g~~~~a~~~~~~~~~~ 434 (493)
++...+++++|.+-++...+.
T Consensus 330 c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 566678888888888887654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.084 Score=46.10 Aligned_cols=257 Identities=14% Similarity=0.081 Sum_probs=160.3
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH----HHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGV----LIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
.++-.-.|+++.|.+-|+.|... +.+-..-+++ -.+.|..+.|.+.-++.-..- +--+..+...+...+.
T Consensus 127 AQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~ 200 (531)
T COG3898 127 AQAALLEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCA 200 (531)
T ss_pred HHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHh
Confidence 45556679999999999998753 2333332322 246788888988888876653 3335678888999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHh--hHHHHHHH---HhccCCHHHHHHHHHHHHHCCCCCCH-HhHHH
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVV--TYTIVIDG---LCKAKEFDKAVQAWEHMIENGIKPDN-KACAA 165 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 165 (493)
.|+|+.|+++.+... +..+ +.++.. .-..|+.+ -.-.-+...|.+.-.+..+ +.||. ..-..
T Consensus 201 ~gdWd~AlkLvd~~~--~~~v--------ie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~ 268 (531)
T COG3898 201 AGDWDGALKLVDAQR--AAKV--------IEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVV 268 (531)
T ss_pred cCChHHHHHHHHHHH--HHHh--------hchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHH
Confidence 999977776665432 1111 122221 11122211 1112456666665555554 35553 33344
Q ss_pred HHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHcc
Q 043480 166 LVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWN-GC-EPDLVTYNAILNYYCDE 243 (493)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~~ 243 (493)
....+.+.|++.++-.+++.+-+....|+. + .+..+.+.|+. ++.-++..... .+ +.+..+...+..+....
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence 567788999999999999998887544443 2 23344556652 22222222211 11 34556666777888889
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCC
Q 043480 244 VMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCN-SNQLDKAYMFMVKKMEAKGLR 298 (493)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~ 298 (493)
|++..|..--+.... ..|....|..|.+.-.. .|+-+++...+.+.......|
T Consensus 343 ~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 343 GEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred cchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 999888887777665 35788888887776554 499999999888888765444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0051 Score=46.80 Aligned_cols=83 Identities=10% Similarity=-0.096 Sum_probs=66.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCC
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKN 94 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 94 (493)
.+--+...|++++|..+|..+...+ +.+..-|..|..++...+++++|+..|......+ ..|+..+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 4555678899999999999988877 5667777888888999999999999999887665 3555556667889999999
Q ss_pred hhhHH
Q 043480 95 FTLIN 99 (493)
Q Consensus 95 ~~~a~ 99 (493)
.+.|.
T Consensus 121 ~~~A~ 125 (165)
T PRK15331 121 AAKAR 125 (165)
T ss_pred HHHHH
Confidence 95444
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.01 Score=47.34 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH
Q 043480 245 MLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQL 281 (493)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 281 (493)
+.+-|++++++|...|+-||..++..+++.+.+.+..
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 3466888888888888888888888888888776643
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0067 Score=51.48 Aligned_cols=99 Identities=11% Similarity=0.056 Sum_probs=74.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhccCC--CCcChhhHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF---SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG--FSLTPFTYS 83 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 83 (493)
...|......+.+.|++++|+..|+.+++.. |.+ +..+..+...|...|++++|...|+.+.+.. .+..+..+.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 3456666666678899999999999999875 333 3577888999999999999999999998752 122345566
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 84 RFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
.+..++...|+. +.|..+|+.++..
T Consensus 222 klg~~~~~~g~~-----------~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDT-----------AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCH-----------HHHHHHHHHHHHH
Confidence 667778889999 5566666666653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0049 Score=47.48 Aligned_cols=73 Identities=19% Similarity=0.313 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHH
Q 043480 407 SYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK-----GFTLDKTVSAA 480 (493)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~ 480 (493)
+...++..+...|++++|..+.+.+....+. |...|..++.+|...|+...|.++|+++.+. |+.|+..+-..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 3455666677788888888888888775322 6778888888888888888888888777543 77777766443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.014 Score=49.49 Aligned_cols=96 Identities=13% Similarity=0.060 Sum_probs=58.7
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDV----ISYNALINGLCKSSRVSEAMHLYEEMQIRGAH--PDEVTFKL 445 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~ 445 (493)
.|...+..+.+.|++++|...|+.+++. .|+. ..+..+..+|...|++++|...|+.+.+.... .....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444445557777777777777764 2322 35556666777777777777777777653211 12445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 446 LIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 446 l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
++..+...|+.+.|.++++.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566666777777777777777664
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0012 Score=50.89 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC-----CCCcChhh
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL-----GFSLTPFT 81 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 81 (493)
+...++..+...|+++.|+.+.+.+...+ |.+...|..++.++...|+..+|.+.|+++.+. |+.|++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 45667778888999999999999999987 888889999999999999999999999888643 77777754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.096 Score=43.11 Aligned_cols=142 Identities=13% Similarity=0.109 Sum_probs=105.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHH----
Q 043480 267 SYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILI---- 342 (493)
Q Consensus 267 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 342 (493)
+.+.++..+.-.|.+.-....+.+.++..+..++.....+++.-.+.|+.+.|...|+...+..-..+..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4556677777788888889999999988777788888889999999999999999999887654445555554443
Q ss_pred -HHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHH
Q 043480 343 -KAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNAL 411 (493)
Q Consensus 343 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 411 (493)
..|...+++..|...+.++...+ +.++...|.-.-+..-.|+..+|.+.++.|.+. .|...+-+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 34556788888999898888765 455555555444555579999999999999986 4554444433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.004 Score=41.10 Aligned_cols=55 Identities=16% Similarity=0.057 Sum_probs=29.9
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 414 GLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 414 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.|.+.+++++|.++++++...++. +...+......+.+.|++++|.+.+++..+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 445555555555555555553222 4555555555555555666665555555543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.18 Score=47.23 Aligned_cols=264 Identities=15% Similarity=0.114 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHH---------HHhhCCCCCChhhHHHHHHHHHhcCCh--hHHHHHHHHhccCCCCcCh
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFD---------EMTQSNCRVFSIDYNRFIGVLIRHSRF--DLVQFYYQQMHPLGFSLTP 79 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~ 79 (493)
.+..=+-.|..+|.+++|.++-- .+-.. ..+.-.++..-.+|.+-++. -+.+.-++++.++|-.|+.
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~ 635 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND 635 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence 34444455677777777754321 00000 01111233333445444433 3444455666667755766
Q ss_pred hhHHHHHHHHhccCChhhHHHHHHHH--HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC--C
Q 043480 80 FTYSRFISGLCEVKNFTLINILLDNM--DKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN--G 155 (493)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~ 155 (493)
.. +...++-.|++.+|..++.+- ...|+++|..|... . ...-+...|..++-..+.++-.+- +
T Consensus 636 iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF---------D-~aQE~~~~g~~~eKKmL~RKRA~WAr~ 702 (1081)
T KOG1538|consen 636 LL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF---------D-YAQEFLGSGDPKEKKMLIRKRADWARN 702 (1081)
T ss_pred HH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH---------H-HHHHHhhcCChHHHHHHHHHHHHHhhh
Confidence 43 334566678886666655442 24455555544321 1 233444455544444433322111 1
Q ss_pred C-CCCHHhHHHHHHHHhccCchhHHHHHHHH------HHhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043480 156 I-KPDNKACAALVVGLCGDGKVDLAYELTVG------AMKGKV---EFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNG 225 (493)
Q Consensus 156 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 225 (493)
+ +|. .....+...|+.++|..+..+ +.+.+. ..+..+...+...+.+...+.-|-++|.+|-.
T Consensus 703 ~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-- 775 (1081)
T KOG1538|consen 703 IKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-- 775 (1081)
T ss_pred cCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--
Confidence 1 121 122333444555555443211 000000 11222222333333344445555666655542
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 043480 226 CEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNT 305 (493)
Q Consensus 226 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 305 (493)
...+.......+++++|..+-+...+ +.|| +|....+.++...++++|.+
T Consensus 776 -------~ksiVqlHve~~~W~eAFalAe~hPe--~~~d--Vy~pyaqwLAE~DrFeEAqk------------------- 825 (1081)
T KOG1538|consen 776 -------LKSLVQLHVETQRWDEAFALAEKHPE--FKDD--VYMPYAQWLAENDRFEEAQK------------------- 825 (1081)
T ss_pred -------HHHHhhheeecccchHhHhhhhhCcc--cccc--ccchHHHHhhhhhhHHHHHH-------------------
Confidence 12345555666677776666555443 1222 22233333344444444433
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 043480 306 VIEAFCKGGQTRRAYKLFEGMRRR 329 (493)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~ 329 (493)
+|.+.|+-.+|..+++++...
T Consensus 826 ---AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 826 ---AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred ---HHHHhcchHHHHHHHHHhhhh
Confidence 445556666677777666543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.078 Score=41.14 Aligned_cols=129 Identities=16% Similarity=0.087 Sum_probs=79.3
Q ss_pred CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCC---CCCCHhhH
Q 043480 332 ELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQG---ITPDVISY 408 (493)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~ 408 (493)
.|+...--.+..+....|+..+|...|++...--+..|....-.+.++....+++..|...++.+.+.. -.|| ..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 355555556666777777777777777776654455666666677777777777777777777766542 1222 33
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043480 409 NALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWD 464 (493)
Q Consensus 409 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 464 (493)
-.+.+.+...|.+..|..-|+...+. -|+...-......+.+.|+.+++..-+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 44566677777777777777777664 3444443344455666666555544333
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.015 Score=42.90 Aligned_cols=84 Identities=13% Similarity=0.089 Sum_probs=48.4
Q ss_pred CHHhHHHHHHHHHccCCHhHHHHHHHHHHhC---------------CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 369 DRILYTTIIDCLCKSREIGTAYGVFLDMVEQ---------------GITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
|..++..++.++++.|+.+....+++..-.- ...|+..+..+++.+|+..|++..|+++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3456777777778888877777777655311 1234555555555666555666666665555532
Q ss_pred -cCCCCCHHHHHHHHHHHHh
Q 043480 434 -RGAHPDEVTFKLLIGGLVQ 452 (493)
Q Consensus 434 -~~~~p~~~~~~~l~~~~~~ 452 (493)
.+++.+..+|..|+.-+..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHH
Confidence 3444455555555544433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.11 Score=42.63 Aligned_cols=49 Identities=10% Similarity=0.002 Sum_probs=30.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 043480 411 LINGLCKSSRVSEAMHLYEEMQIRGAHP--DEVTFKLLIGGLVQEKKLELA 459 (493)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a 459 (493)
+...|.+.|.+..|..-++.+++.-... .......++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 4566777788888888777776642111 134556667777777776644
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.24 Score=46.07 Aligned_cols=132 Identities=11% Similarity=0.064 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGL 89 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 89 (493)
..|..++.---...+.+.+..+++.++.. .|.----|......-.+.|..+.+.++|++.+.. ++.+...|...+.-+
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFL 123 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 34444554444444556677777777754 2333334556666666788889999999988763 566666776666555
Q ss_pred hc-cCChhhHHHHHHHHHHHHHHHHHHHHhC-CC-CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 90 CE-VKNFTLINILLDNMDKLALEVFHKMVSK-GR-EPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 90 ~~-~~~~~~a~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
.. .|+.+ ...+.|+..... |. -.+...|...|..-..++++.....+|++.++.
T Consensus 124 ~n~~~d~~-----------~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 124 KNNNGDPE-----------TLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred hccCCCHH-----------HHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 44 34442 334444444432 21 124456888888888888899999999988874
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0065 Score=52.95 Aligned_cols=133 Identities=12% Similarity=0.003 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----HhCCC-CCCHHhHHHHHHHHHccCCHhHHHHHHHHHH----hCCC-CCCHh
Q 043480 337 TFTILIKAFLREGSSAMAEKLLNQM----RGMNL-SPDRILYTTIIDCLCKSREIGTAYGVFLDMV----EQGI-TPDVI 406 (493)
Q Consensus 337 ~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~p~~~ 406 (493)
.|..+...|.-.|+++.|+...+.- ++.|- ......+..+..++.-.|+++.|.+.|+... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4556666666778899888765432 22221 1234577888899999999999999887654 2221 22345
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 407 SYNALINGLCKSSRVSEAMHLYEEMQI----RG-AHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
..-+|...|.-..++++|+.++.+-.. .+ ..-....+.+|..++...|..+.|..+.+..++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 566788888888899999988876422 11 1125678889999999999999999998887765
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00055 Score=46.01 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=43.9
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhC----CC-CC-ChhhHHHHHHHHHhcCChhHHHHHHHHhc
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQS----NC-RV-FSIDYNRFIGVLIRHSRFDLVQFYYQQMH 71 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 71 (493)
.-..+|+.+...|.+.|++++|++.|+++.+. |. .+ ...++..+..++...|++++|++.+++..
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566788888888888888888888876642 11 11 14456667777777888888877777654
|
... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0015 Score=37.90 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFI 51 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 51 (493)
|.++..+...|.+.|++++|+++|+++++.. |.|+..|..+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La 42 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALA 42 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhh
Confidence 3467788888888888888888888888876 66666666554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.3 Score=46.62 Aligned_cols=113 Identities=13% Similarity=0.134 Sum_probs=87.6
Q ss_pred cCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043480 333 LDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALI 412 (493)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 412 (493)
...-+.+--+.-+...|+-.+|.++-.+.+ -|+...|..-+.+++..+++++-+++-+... .+.-|....
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 344455666667778899999999888777 6899999999999999999988777655443 246688889
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043480 413 NGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWD 464 (493)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 464 (493)
.+|.+.|+.++|.+++-+.... . -...+|.+.|++.+|.+.--
T Consensus 752 e~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHH
Confidence 9999999999999998775331 1 46778889999888876543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.33 Score=45.99 Aligned_cols=212 Identities=9% Similarity=-0.009 Sum_probs=95.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCC
Q 043480 41 RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKG 120 (493)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g 120 (493)
.|.+..|..+...-...-.++-|...|-+... -+.......|-..+++.-+..+....+.+. ++|.+++-++-+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~f-eeaek~yld~dr-- 762 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEF-EEAEKLYLDADR-- 762 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcch-hHhhhhhhccch--
Confidence 46677888877766666666667666655543 223322222222222111111100111110 333333333321
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHH
Q 043480 121 REPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG-IKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYN 199 (493)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 199 (493)
-...+..+.+.|++-...++++.--... -..-..++..+...+.....|++|.+.+..... ..
T Consensus 763 -------rDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e 826 (1189)
T KOG2041|consen 763 -------RDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TE 826 (1189)
T ss_pred -------hhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hH
Confidence 1223444555566555555443211100 000123455555555555555555555544321 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 043480 200 ALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSN 279 (493)
Q Consensus 200 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 279 (493)
..+.++.+..++++-..+.+.+ +.+....-.+..++.+.|.-++|.+.+-+... | ...+..|...+
T Consensus 827 ~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~Ln 892 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELN 892 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHH
Confidence 2344444444444443333332 44455555666777777777777665543221 1 12344555666
Q ss_pred CHHHHHHHH
Q 043480 280 QLDKAYMFM 288 (493)
Q Consensus 280 ~~~~a~~~~ 288 (493)
++.+|.++-
T Consensus 893 QW~~avela 901 (1189)
T KOG2041|consen 893 QWGEAVELA 901 (1189)
T ss_pred HHHHHHHHH
Confidence 666665543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.29 Score=43.87 Aligned_cols=411 Identities=13% Similarity=0.116 Sum_probs=223.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH--HHhcCChhHHHHHHHHhccC--CCC----------
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGV--LIRHSRFDLVQFYYQQMHPL--GFS---------- 76 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~--~~~---------- 76 (493)
..+.++++|.- ++++.....+.+..+.. + ...|..+..+ +-+.+.+.+|++.+..-... +..
T Consensus 48 l~grilnAffl-~nld~Me~~l~~l~~~~-~--~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~ 123 (549)
T PF07079_consen 48 LGGRILNAFFL-NNLDLMEKQLMELRQQF-G--KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ 123 (549)
T ss_pred HhhHHHHHHHH-hhHHHHHHHHHHHHHhc-C--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence 34566777765 56677666666666643 2 3445555544 45788999998887766543 211
Q ss_pred --cChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc--------CCHHHHHH
Q 043480 77 --LTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKA--------KEFDKAVQ 146 (493)
Q Consensus 77 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--------~~~~~a~~ 146 (493)
+|...-+..+.++...|.+.+++.+++++ +..+..+....+..+|+.++-.+++. ...+-+.+
T Consensus 124 l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i-------~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pd 196 (549)
T PF07079_consen 124 LFSDFFLDEIEAHSLIETGRFSEGRAILNRI-------IERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPD 196 (549)
T ss_pred HhhHHHHHHHHHHHHHhcCCcchHHHHHHHH-------HHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChH
Confidence 12223355667888999998888666543 44444444667888999866555543 11111222
Q ss_pred HH-------HHHHHC------CCCCCHHhHHHHHHHHhcc--CchhHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCC
Q 043480 147 AW-------EHMIEN------GIKPDNKACAALVVGLCGD--GKVDLAYELTVGAMKGKVEFGVL-IYNALISGFCRTGR 210 (493)
Q Consensus 147 ~~-------~~~~~~------~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 210 (493)
.| ++|... .+.|.......++....-. .+..--.+++......-+.|+.. +...+...+.+ +
T Consensus 197 yYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~ 274 (549)
T PF07079_consen 197 YYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--D 274 (549)
T ss_pred HHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--C
Confidence 22 222211 1233333334443333221 12222223333322322334332 22334444433 4
Q ss_pred HHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHH-------HHHHHHHc-c
Q 043480 211 IRRAMAIKSFMKWNGC----EPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYN-------QLLKGLCN-S 278 (493)
Q Consensus 211 ~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~-~ 278 (493)
.+++..+-+.+....+ +.=..+|..++....+.++...|.+.+..+.-. .|+...-. .+-+..+. .
T Consensus 275 ~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD 352 (549)
T PF07079_consen 275 PEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDD 352 (549)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcch
Confidence 5555555554443321 122457888888999999999999988877653 24332211 11222221 1
Q ss_pred C---CHHHHHHHHHHHHHcCCCCChhhHHHHH---HHHHHcCC-HHHHHHHHHHHHHcCCCcCHhHHHHHH----HHHH-
Q 043480 279 N---QLDKAYMFMVKKMEAKGLRDKVSYNTVI---EAFCKGGQ-TRRAYKLFEGMRRRGIELDVVTFTILI----KAFL- 346 (493)
Q Consensus 279 ~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~- 346 (493)
. +...-+.+|......... .......++ .-+-+.|. -++|+++++.+.+-. +-|...-+.+. .+|.
T Consensus 353 ~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~q 430 (549)
T PF07079_consen 353 ESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQ 430 (549)
T ss_pred HHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHH
Confidence 1 122223334333332211 111112222 23444555 788999999888641 22333333322 2232
Q ss_pred --HcCCHHHHHHHHHHHHhCCCCCCHH----hHHHHHHH--HHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 043480 347 --REGSSAMAEKLLNQMRGMNLSPDRI----LYTTIIDC--LCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKS 418 (493)
Q Consensus 347 --~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 418 (493)
....+..-..+-+-+.+.|++|-.. .-|.+.++ +...|++..+.-.-.-+.+ +.|++.+|..+.-++...
T Consensus 431 aLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~ 508 (549)
T PF07079_consen 431 ALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMEN 508 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHH
Confidence 2344555666666667788776443 34444443 3467899988766555554 689999999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHH
Q 043480 419 SRVSEAMHLYEEMQIRGAHPDEVTFKL 445 (493)
Q Consensus 419 g~~~~a~~~~~~~~~~~~~p~~~~~~~ 445 (493)
.++++|..++..+ +|+..+++.
T Consensus 509 k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 509 KRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred hhHHHHHHHHHhC-----CCchhhHHH
Confidence 9999999999884 566666554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.005 Score=55.11 Aligned_cols=69 Identities=9% Similarity=-0.140 Sum_probs=58.4
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS---IDYNRFIGVLIRHSRFDLVQFYYQQMHPL 73 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (493)
..|.++..++.+..+|.+.|++++|+..|++.++.+ |.+. .+|..+..+|...|+.++|+..+++.++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457788899999999999999999999999998876 3333 35888999999999999999999998874
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0074 Score=40.42 Aligned_cols=63 Identities=22% Similarity=0.216 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 406 ISYNALINGLCKSSRVSEAMHLYEEMQIR--GAH---PD-EVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
.+++.+...|...|++++|+..|++..+. ... |+ ..++..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666667777777777777777766432 011 11 45666677777777777777777777653
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.15 Score=39.10 Aligned_cols=88 Identities=9% Similarity=-0.026 Sum_probs=61.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 043480 344 AFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSE 423 (493)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 423 (493)
-+...|++++|..+|.-+.-.+ +.+..-|..|..++-..++++.|...|......+. -|+..+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 3456788888888888777655 45566677777777777888888888877665432 244444556777778888888
Q ss_pred HHHHHHHHHH
Q 043480 424 AMHLYEEMQI 433 (493)
Q Consensus 424 a~~~~~~~~~ 433 (493)
|+..|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 8888877766
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.046 Score=40.29 Aligned_cols=82 Identities=15% Similarity=0.084 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHH---------------hCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHh-C
Q 043480 336 VTFTILIKAFLREGSSAMAEKLLNQMR---------------GMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVE-Q 399 (493)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~ 399 (493)
.++..++.++++.|+.+....+++..- .....|+..+..+++.+|+..|++..|.++++.+.+ .
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344455555555555555555444332 123468888999999999999999999999988874 4
Q ss_pred CCCCCHhhHHHHHHHHHh
Q 043480 400 GITPDVISYNALINGLCK 417 (493)
Q Consensus 400 ~~~p~~~~~~~l~~~~~~ 417 (493)
+++.+..+|..|+.-...
T Consensus 83 ~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 677777888888875443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.42 Score=42.59 Aligned_cols=78 Identities=6% Similarity=-0.070 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHc---cCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 043480 198 YNALISGFCRTGRIRRAMAIKSFMKWNG---CEPDLVTYNAILNYYCD---EVMLDEAEKLVMEMESCGIEPDVYSYNQL 271 (493)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 271 (493)
...++-+|....+++...++.+.+.... +......-....-++.+ .|+.++|.+++..+....-.+++.++..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3345555666666666666666666431 11111212223333444 66677777776665444445566666655
Q ss_pred HHHH
Q 043480 272 LKGL 275 (493)
Q Consensus 272 ~~~~ 275 (493)
.+.|
T Consensus 224 GRIy 227 (374)
T PF13281_consen 224 GRIY 227 (374)
T ss_pred HHHH
Confidence 5443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.14 Score=37.29 Aligned_cols=139 Identities=11% Similarity=0.154 Sum_probs=79.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHH
Q 043480 312 KGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYG 391 (493)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 391 (493)
-.|..++..++..+..... +..-++.++--....-+-+-..+.++.+-+ -.| ...+|++.....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFD----------is~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFD----------ISKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-----------GGG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcC----------chhhcchHHHHH
Confidence 3567777777777766542 344444444333333333333333333322 111 123455555544
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 043480 392 VFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGF 471 (493)
Q Consensus 392 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 471 (493)
.+-.+- .+...+...+..+...|+-+.-.++...+.+ +-.+++.....+..+|.+.|+..++.+++.++.+.|+
T Consensus 78 C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 443321 2344566777888889999999999988865 3467899999999999999999999999999999886
Q ss_pred C
Q 043480 472 T 472 (493)
Q Consensus 472 ~ 472 (493)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.16 Score=36.90 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=20.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCC
Q 043480 344 AFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQG 400 (493)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 400 (493)
.....|..+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.++-+.|
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3333444444444444443322 3344444444444444444444444444444433
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.5 Score=42.37 Aligned_cols=115 Identities=17% Similarity=0.312 Sum_probs=84.2
Q ss_pred HhHHHHHHHHHccCCHhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHH
Q 043480 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQG-ITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTF-KLLIG 448 (493)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~ 448 (493)
.+|-..+..-.+..-++.|..+|-++.+.| +.+++.++++++.-+ ..|+...|.++|+--... .||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456667777777788999999999999888 677888889888755 468899999999987664 3454444 56677
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhch
Q 043480 449 GLVQEKKLELACRLWDQMMEKGFTLD--KTVSAALIEAIHLQD 489 (493)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~ 489 (493)
-+...++-+.|..+|+..+.+ +..+ ..+|...+.-=..-|
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G 516 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVG 516 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhc
Confidence 888899999999999977653 2223 456666665444433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.028 Score=50.50 Aligned_cols=99 Identities=11% Similarity=0.008 Sum_probs=72.7
Q ss_pred CCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 043480 367 SPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDV----ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVT 442 (493)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 442 (493)
+.+...++.+..+|...|++++|...|++.++. .|+. .+|..+..+|...|+.++|+..+++..+.+ .| .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 556788999999999999999999999999986 5553 358999999999999999999999998842 11 2
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHHHHHcCC
Q 043480 443 FKLLIG--GLVQEKKLELACRLWDQMMEKGF 471 (493)
Q Consensus 443 ~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~ 471 (493)
|..+.. .+....+.++..++++.+.+-|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 221111 11122344567777777777664
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.45 Score=41.81 Aligned_cols=116 Identities=10% Similarity=0.040 Sum_probs=64.4
Q ss_pred HcCChhHHHHHHHHHhhCCCCCChhhHHHHHH--HHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHH----HhccCC
Q 043480 21 KAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIG--VLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISG----LCEVKN 94 (493)
Q Consensus 21 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~~~ 94 (493)
..|+-..|+++-.+..+. +..|......++. +-.-.|+++.|.+-|+.|.. ++.+-..=+++ -.+.|+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhccc
Confidence 346777777776655432 2333444444443 33446888888888888865 22222222222 234566
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 95 FTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 95 ~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
.+.| ...-++.... -+.-...+...+...+..|+++.|+++.+.-+..
T Consensus 170 reaA-----------r~yAe~Aa~~-Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 170 REAA-----------RHYAERAAEK-APQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHH-----------HHHHHHHHhh-ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 6333 3333333332 1223567777788888888888888888766543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.3 Score=39.87 Aligned_cols=91 Identities=15% Similarity=-0.019 Sum_probs=52.0
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHH
Q 043480 163 CAALVVGLCGDGKVDLAYELTVGAMKG----KVEFG-VLIYNALISGFCRTGRIRRAMAIKSFMKWNG---CEPDLVTYN 234 (493)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 234 (493)
+....+.+.+..++++|-..+.+-... .--++ -..|...|-.+....++..|.+.++...+.+ -+.+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 444455566666666665544432211 00111 1235556666777778888888888754432 234566777
Q ss_pred HHHHHHHccCChHHHHHHHH
Q 043480 235 AILNYYCDEVMLDEAEKLVM 254 (493)
Q Consensus 235 ~ll~~~~~~~~~~~a~~~~~ 254 (493)
.|+.+| ..|+.+++..++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHh-ccCCHHHHHHHHc
Confidence 777766 5677777666554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.76 Score=42.94 Aligned_cols=381 Identities=9% Similarity=0.015 Sum_probs=198.9
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH-hcCChhHHHHHHHHhccC-CC-CcChhh
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLI-RHSRFDLVQFYYQQMHPL-GF-SLTPFT 81 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~-~~~~~~ 81 (493)
.|.--..|...+..=.+-|..+.+.++|++..+. +|.+...|......+. ..|+.+.....|+.+... |. -.....
T Consensus 75 yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~l 153 (577)
T KOG1258|consen 75 YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPL 153 (577)
T ss_pred CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHH
Confidence 3344445566666667889999999999998875 6788888888776544 567888888999988764 21 123346
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh---cc------CCHHHHHHHHHHHH
Q 043480 82 YSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLC---KA------KEFDKAVQAWEHMI 152 (493)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~---~~------~~~~~a~~~~~~~~ 152 (493)
|...+.---.++++.. ...+++++++. ....|+..-.-|. .. ..++++.++-....
T Consensus 154 Wdkyie~en~qks~k~-----------v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~ 218 (577)
T KOG1258|consen 154 WDKYIEFENGQKSWKR-----------VANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVA 218 (577)
T ss_pred HHHHHHHHhccccHHH-----------HHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHH
Confidence 7777777777778844 44555555432 1112221111111 11 11222222221111
Q ss_pred HC----CCCCCHHhHHHHHHHHh-ccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--
Q 043480 153 EN----GIKPDNKACAALVVGLC-GDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNG-- 225 (493)
Q Consensus 153 ~~----~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 225 (493)
.. -..+.......-+.-.. ..+..+++........ ...-..+............++.-.+..
T Consensus 219 ~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~~~~~kr~~fE~~IkrpYf 287 (577)
T KOG1258|consen 219 ERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSEEEEEKRWGFEEGIKRPYF 287 (577)
T ss_pred hhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhHhHHHHHHhhhhhcccccc
Confidence 10 00011111111111110 1111222222111111 011112222333334444444443321
Q ss_pred -----CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh
Q 043480 226 -----CEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDK 300 (493)
Q Consensus 226 -----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 300 (493)
.+++..+|..-+..-...|+.+.+.-+++...-. +..-...|-..+.-....|+.+-+..++....+......+
T Consensus 288 hvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~ 366 (577)
T KOG1258|consen 288 HVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP 366 (577)
T ss_pred ccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc
Confidence 1334567888888888889999888888887521 1112234444455555558888887776665554333222
Q ss_pred hhHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCcCHhH-HHHHHHHHHHcCCHHHHH---HHHHHHHhCCCCCCHHhHHH
Q 043480 301 VSYNTVIEAF-CKGGQTRRAYKLFEGMRRRGIELDVVT-FTILIKAFLREGSSAMAE---KLLNQMRGMNLSPDRILYTT 375 (493)
Q Consensus 301 ~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~ 375 (493)
. ...+-..+ -..|++..|..+++.+...- |+..- -..-+....+.|+.+.+. .++...... ..+..+...
T Consensus 367 ~-i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~ 441 (577)
T KOG1258|consen 367 I-IHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEK 441 (577)
T ss_pred H-HHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHH
Confidence 2 22222222 33578999999999888763 44322 222233445677777776 333333321 122222222
Q ss_pred HHHH-----HHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 043480 376 IIDC-----LCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSS 419 (493)
Q Consensus 376 l~~~-----~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 419 (493)
+.-- +.-.++.+.|..++.++.+. ++++...|..+++.....+
T Consensus 442 l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 442 LYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 2221 23357888899999998886 6777788888887766555
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.53 Score=40.86 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=79.0
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCChhhHHH-------HHHHHHhcC-ChhHHHHHHHHhccC--------CCCcCh---
Q 043480 19 LVKAGLIDQAVHVFDEMTQSNCRVFSIDYNR-------FIGVLIRHS-RFDLVQFYYQQMHPL--------GFSLTP--- 79 (493)
Q Consensus 19 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--- 79 (493)
..++|+++.|..++.++.......++..... ++......+ +++.|..++++..+. ...++.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 4678999999999998876431222222222 233334556 888887777776543 112332
Q ss_pred --hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 80 --FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 80 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
.++..++.++...+..+.. ++|..+++.+... .+-.+..+..-+..+.+.++.+.+.+.+.+|+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~--------~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESV--------EKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHH--------HHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3556666777766666433 4567777777554 2223555555666777778888888888888875
|
It is also involved in sporulation []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.29 Score=42.44 Aligned_cols=232 Identities=11% Similarity=0.026 Sum_probs=132.2
Q ss_pred HhcCChhHHHHHHHHhccCC--CCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCC-CCCCHhhHHHH
Q 043480 55 IRHSRFDLVQFYYQQMHPLG--FSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKG-REPDVVTYTIV 131 (493)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l 131 (493)
..+.+.++|+..|.+-+..- ......++..+..+.+..|.++.+. ..|....+...+.. ..---.+|..+
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL-------~~a~sqi~~a~~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML-------KFAVSQIDTARELEDSDFLLEAYLNL 89 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666665554420 0112235556666667777665554 23333322222210 00113456667
Q ss_pred HHHHhccCCHHHHHHHHHHHHHC-CCCC---CHHhHHHHHHHHhccCchhHHHHHHHHHHhCC-----CCCChhhHHHHH
Q 043480 132 IDGLCKAKEFDKAVQAWEHMIEN-GIKP---DNKACAALVVGLCGDGKVDLAYELTVGAMKGK-----VEFGVLIYNALI 202 (493)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~ 202 (493)
.+++-+.-++.+++.+-+.-... |..| .-.....+..++...+.++.+++.|+...+.. ......++..|-
T Consensus 90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg 169 (518)
T KOG1941|consen 90 ARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLG 169 (518)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence 77777777777777766655432 2222 11334456677777788888888888876522 122345778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHH-----HHHHHHHccCChHHHHHHHHHHH----HCCCCC-ChhhH
Q 043480 203 SGFCRTGRIRRAMAIKSFMKW----NGCEPDLVTYN-----AILNYYCDEVMLDEAEKLVMEME----SCGIEP-DVYSY 268 (493)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~ 268 (493)
+.|.+..++++|.-...+... .++..=..-|. .+.-++...|....|.+..++.. ..|-.+ .....
T Consensus 170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 888888998888766555432 22211111222 23345566777777777776654 333222 12334
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH
Q 043480 269 NQLLKGLCNSNQLDKAYMFMVKKME 293 (493)
Q Consensus 269 ~~l~~~~~~~~~~~~a~~~~~~~~~ 293 (493)
..+.+.|...|+.+.|+.-|+.++.
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHH
Confidence 5667888889999999888887765
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.45 Score=39.46 Aligned_cols=80 Identities=14% Similarity=0.237 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhh---HHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSID---YNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
..|+ =+..-.+.|++++|.+.|+.+.... |.++.+ ...++-++-+.++++.|+...++.+..-+......|...|
T Consensus 36 ~LY~-~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 36 ELYN-EGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3454 4455678899999999999998764 555444 3445567789999999999999998875444444566666
Q ss_pred HHHhc
Q 043480 87 SGLCE 91 (493)
Q Consensus 87 ~~~~~ 91 (493)
.+++.
T Consensus 114 kgLs~ 118 (254)
T COG4105 114 KGLSY 118 (254)
T ss_pred HHHHH
Confidence 66653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.3 Score=45.88 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=21.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhh
Q 043480 448 GGLVQEKKLELACRLWDQMMEK---GFTLDKTVSAALIEAIHL 487 (493)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~ 487 (493)
+++.+.++...-...+...... ...+|......++.+.+.
T Consensus 423 Ng~~~~~~~~l~~~~~~~l~~~~~~~~~~De~~l~~lL~g~~l 465 (468)
T PF10300_consen 423 NGFPRMPKEELEIKSLLELEESKNSEEDPDERALRHLLKGACL 465 (468)
T ss_pred hccccCChHHHHHHHHHHHHhcccccCCccHHHHHHHHHHHHh
Confidence 4444444433332344444332 245788888888877553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.16 Score=36.81 Aligned_cols=87 Identities=14% Similarity=-0.035 Sum_probs=65.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChh---hHHHHHHHHhc
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPF---TYSRFISGLCE 91 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~ 91 (493)
-..+....|+++.|++.|.+.+..- |..++.||.-..++.-+|+.++|+.=+++.++..-..+.. .|..-...|..
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3567889999999999999998874 7778999999999999999999999999998763222322 23333344666
Q ss_pred cCChhhHHHHH
Q 043480 92 VKNFTLINILL 102 (493)
Q Consensus 92 ~~~~~~a~~~~ 102 (493)
.|+.+.|+.-|
T Consensus 128 ~g~dd~AR~DF 138 (175)
T KOG4555|consen 128 LGNDDAARADF 138 (175)
T ss_pred hCchHHHHHhH
Confidence 78885544333
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.68 Score=41.34 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 443 FKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 443 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
+.+++.++.-.|+++.|.+..++|.+.
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 344555555666666666666666554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.23 Score=43.85 Aligned_cols=97 Identities=18% Similarity=0.051 Sum_probs=68.1
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 043480 125 VVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISG 204 (493)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (493)
..+++.+..++.+.+++..|++..++.+..+ ++|...+..-..++...|+++.|+..|+.+.+.. +-|-.+-+.++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4467778888888889999998888888765 4577888888888888888888888888888764 3344455555555
Q ss_pred HHhcCCHHH-HHHHHHHHHH
Q 043480 205 FCRTGRIRR-AMAIKSFMKW 223 (493)
Q Consensus 205 ~~~~~~~~~-a~~~~~~~~~ 223 (493)
-.+.....+ ..++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 444444333 3556666653
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.96 Score=41.30 Aligned_cols=427 Identities=9% Similarity=0.028 Sum_probs=205.5
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH-HHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGV-LIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
.+++.|+..|...+..+-+.+.+.+.-.+|.+|+... |.++..|-.-..- +-.+.+++.|..+|.+.++.+ +.++..
T Consensus 99 ~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~L 176 (568)
T KOG2396|consen 99 NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKL 176 (568)
T ss_pred HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHH
Confidence 4677899999999988888888999999999999885 7778888766644 444556899999999988765 445555
Q ss_pred HHHHHHHHhccCC-hhhHHHHHHHH-------HHHHHHHHHHHHhCCCCCCHh--hHHHHH---HHHhccCCHHHH-HHH
Q 043480 82 YSRFISGLCEVKN-FTLINILLDNM-------DKLALEVFHKMVSKGREPDVV--TYTIVI---DGLCKAKEFDKA-VQA 147 (493)
Q Consensus 82 ~~~ll~~~~~~~~-~~~a~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~--~~~~l~---~~~~~~~~~~~a-~~~ 147 (493)
|...++.-..--. ...-...++.. .+.....+.. ..++.. .+..-- ..........+- ..+
T Consensus 177 w~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~-----~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i 251 (568)
T KOG2396|consen 177 WKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWIN-----YANSVDIIKGAVKSVELSVAEKFDFLKELQKNI 251 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHh-----hccchhhhhcchhhcchHHHHHHHHHHHHHHHH
Confidence 5554443211000 00000000000 0000000000 000110 000000 000000000000 011
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043480 148 WEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCE 227 (493)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (493)
.+.+... .+.++.++.. .|.+.++-.......+ +...-....-..+.+....+|+...+. .
T Consensus 252 ~d~~~~~-~~~np~~~~~------------laqr~l~i~~~tdl~~----~~~~~~~~~~~~k~s~~~~v~ee~v~~--l 312 (568)
T KOG2396|consen 252 IDDLQSK-APDNPLLWDD------------LAQRELEILSQTDLQH----TDNQAKAVEVGSKESRCCAVYEEAVKT--L 312 (568)
T ss_pred HHHHhcc-CCCCCccHHH------------HHHHHHHHHHHhhccc----hhhhhhchhcchhHHHHHHHHHHHHHH--h
Confidence 1222211 1112222222 2222222222111111 111111111112233344666666654 5
Q ss_pred CCHHHHHHHHHHHHccC------ChHHHHHHHHHHHHCC-C-CCChhhHHHHHHHHHccCCHHH-HHHHHHHHHHcCCCC
Q 043480 228 PDLVTYNAILNYYCDEV------MLDEAEKLVMEMESCG-I-EPDVYSYNQLLKGLCNSNQLDK-AYMFMVKKMEAKGLR 298 (493)
Q Consensus 228 ~~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~ 298 (493)
|+...|+..|..|...- .+.....+++.....+ . +.....|..+.-.+.......+ |..+..+... .
T Consensus 313 ~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~----~ 388 (568)
T KOG2396|consen 313 PTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFR----D 388 (568)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhc----c
Confidence 66666777776665332 3334444555444332 2 2234455555555555544332 2222222222 2
Q ss_pred ChhhHHHHHHHHHHcC-CHH-HHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCC-HHHH--HHHHHHHHhCCCCCCHHh-
Q 043480 299 DKVSYNTVIEAFCKGG-QTR-RAYKLFEGMRRRGIELDVVTFTILIKAFLREGS-SAMA--EKLLNQMRGMNLSPDRIL- 372 (493)
Q Consensus 299 ~~~~~~~l~~~~~~~~-~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a--~~~~~~~~~~~~~~~~~~- 372 (493)
+...|..-++...+.. +++ .-.+++......-..+....|+... .|+ .... ..++....+.+ .|+..+
T Consensus 389 s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl 462 (568)
T KOG2396|consen 389 SGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVTL 462 (568)
T ss_pred hHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceeeh
Confidence 4445554444444221 221 1122233333321122222232222 222 1111 12333334443 344443
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--hcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHH
Q 043480 373 YTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLC--KSSRVSEAMHLYEEMQI-RGAHPDEVTFKLLIGG 449 (493)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~ 449 (493)
-+.++..+...|-.+.|...+..+... .+|+...|..++..-. .+-+...+..+++.|.. .| .|+..|...+.-
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKE 539 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHh
Confidence 366777788888899999999998876 4667777777765322 12237778888888854 45 578888888877
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 043480 450 LVQEKKLELACRLWDQMME 468 (493)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~ 468 (493)
-...|..+.+-.++-++.+
T Consensus 540 e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 540 ELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hccCCCcccccHHHHHHHH
Confidence 7788888888887777765
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.22 Score=41.56 Aligned_cols=97 Identities=19% Similarity=0.191 Sum_probs=66.3
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CC-CHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGI--TPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGA-HP-DEVTFKLLI 447 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p-~~~~~~~l~ 447 (493)
.|+.-+.. .+.|++..|...|...++... .-....+-.|..++...|++++|..+|..+.+.-. .| -+..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 56655544 456778888888888886521 11123444577888888888888888888765422 12 256777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 043480 448 GGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
....+.|+.++|..+|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8888888888888888888774
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.6 Score=38.24 Aligned_cols=208 Identities=13% Similarity=0.082 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 043480 45 IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPD 124 (493)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~ 124 (493)
..|..-..+|....++++|...+.+..+. ...|...|. |...+ ++|.-+.+++.. .+--
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh--------------AAKay----EqaamLake~~k--lsEv 90 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH--------------AAKAY----EQAAMLAKELSK--LSEV 90 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH--------------HHHHH----HHHHHHHHHHHH--hHHH
Confidence 34555566777777888887777766432 122222221 11111 344444555543 1222
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHH--CCCCCCH--HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHH
Q 043480 125 VVTYTIVIDGLCKAKEFDKAVQAWEHMIE--NGIKPDN--KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNA 200 (493)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (493)
+..|+.....|..+|.++.|-..+++.-+ .++.|+. ..|..-+......++...|.+++. .
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~g---------------k 155 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYG---------------K 155 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHH---------------H
Confidence 44667777788888888888777776542 2345553 233333334444444444444443 3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHCC---CCCChhhHHHHH
Q 043480 201 LISGFCRTGRIRRAMAIKSFMKWN----GCEPDL-VTYNAILNYYCDEVMLDEAEKLVMEMESCG---IEPDVYSYNQLL 272 (493)
Q Consensus 201 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~ 272 (493)
.-..+.+...+++|-..+.+-... .--++. ..|...|-.+....++..|...++.-.+.+ -+.+..+...|+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 344566666666654443332211 112232 345566667777889999999999865543 234566777788
Q ss_pred HHHHccCCHHHHHHHHH
Q 043480 273 KGLCNSNQLDKAYMFMV 289 (493)
Q Consensus 273 ~~~~~~~~~~~a~~~~~ 289 (493)
.+| ..|+.+++..++.
T Consensus 236 ~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHh-ccCCHHHHHHHHc
Confidence 776 4577777766543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.11 Score=45.72 Aligned_cols=79 Identities=9% Similarity=-0.012 Sum_probs=43.0
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCC---CC-----------CChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSN---CR-----------VFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~---~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
...|.+.|++..|..-|+++...= .. .-...++.+..++.+.+.+.+|++..++.+..+ ++|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 457888899999999888865420 00 011223334444555555555555555555444 444444
Q ss_pred HHHHHHHHhccCCh
Q 043480 82 YSRFISGLCEVKNF 95 (493)
Q Consensus 82 ~~~ll~~~~~~~~~ 95 (493)
.-.-.+++...+++
T Consensus 294 LyRrG~A~l~~~e~ 307 (397)
T KOG0543|consen 294 LYRRGQALLALGEY 307 (397)
T ss_pred HHHHHHHHHhhccH
Confidence 44445555555555
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.38 Score=38.54 Aligned_cols=165 Identities=16% Similarity=0.046 Sum_probs=95.5
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcCh--hhH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTP--FTY 82 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 82 (493)
.|.-+.+||.|.--+...|+++.|.+.|+...+.++..+-...|.-|. +---|+++-|.+-+...-+.+ +.|+ ..|
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LW 172 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDD-PNDPFRSLW 172 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcC-CCChHHHHH
Confidence 456678888888888899999999999999988774443333333332 334688888887777766653 3333 223
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-----
Q 043480 83 SRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIK----- 157 (493)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----- 157 (493)
..+.. ..-++..|. ..+.++... ...+.+.|+.+--.+.+ +. ...+++++....-.
T Consensus 173 LYl~E---~k~dP~~A~----------tnL~qR~~~--~d~e~WG~~iV~~yLgk---iS-~e~l~~~~~a~a~~n~~~A 233 (297)
T COG4785 173 LYLNE---QKLDPKQAK----------TNLKQRAEK--SDKEQWGWNIVEFYLGK---IS-EETLMERLKADATDNTSLA 233 (297)
T ss_pred HHHHH---hhCCHHHHH----------HHHHHHHHh--ccHhhhhHHHHHHHHhh---cc-HHHHHHHHHhhccchHHHH
Confidence 32222 233443222 233333332 22233444433222222 11 12344444432110
Q ss_pred -CCHHhHHHHHHHHhccCchhHHHHHHHHHHhCC
Q 043480 158 -PDNKACAALVVGLCGDGKVDLAYELTVGAMKGK 190 (493)
Q Consensus 158 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 190 (493)
.=..||..+...+...|+.++|..+|+-.+..+
T Consensus 234 e~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 234 EHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 113678889999999999999999999888654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.21 Score=41.70 Aligned_cols=91 Identities=14% Similarity=0.144 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHhccCCC--CcChhhHHHH
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS---IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF--SLTPFTYSRF 85 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l 85 (493)
.|+.-+. +.+.|++.+|...|...++.. |.+. ..+..|...+...|++++|...|..+.+.-. +--+..+..|
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 5765555 667788999999999999874 4443 4466788999999999999999999987631 2234667778
Q ss_pred HHHHhccCChhhHHHHHH
Q 043480 86 ISGLCEVKNFTLINILLD 103 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~ 103 (493)
..+..+.|+.+.|+..++
T Consensus 222 g~~~~~l~~~d~A~atl~ 239 (262)
T COG1729 222 GVSLGRLGNTDEACATLQ 239 (262)
T ss_pred HHHHHHhcCHHHHHHHHH
Confidence 888889999955443333
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.42 Score=41.09 Aligned_cols=153 Identities=9% Similarity=-0.051 Sum_probs=94.5
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhh--H--HHHHHHHHHcCCHH
Q 043480 242 DEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVS--Y--NTVIEAFCKGGQTR 317 (493)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~--~~l~~~~~~~~~~~ 317 (493)
..|++.+|-..++++.+. .|.|...+...-.+|.-.|+.+.-...+++++..-. ++... | ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn-~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN-ADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC-CCCcHHHHHHHHHHhhHHHhccch
Confidence 466777777777777654 456666677777778888888877777777766411 23322 2 22233445678888
Q ss_pred HHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHhHHHHHHHHHccCCHhHHHHHHH
Q 043480 318 RAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM---NLSPDRILYTTIIDCLCKSREIGTAYGVFL 394 (493)
Q Consensus 318 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 394 (493)
+|++.-++..+-+ +.|...-.+....+-..|++.++.+...+-... +.-.-...|-...-.+...+.++.|+.+|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888887777654 336666667777777778888877766543321 101111233344445566678888888887
Q ss_pred HHH
Q 043480 395 DMV 397 (493)
Q Consensus 395 ~~~ 397 (493)
.-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 644
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.2 Score=40.70 Aligned_cols=152 Identities=7% Similarity=-0.015 Sum_probs=95.8
Q ss_pred hhHHHHHHHHhccC-CCCcC-hhhHHHHHHHHhcc---C--ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043480 60 FDLVQFYYQQMHPL-GFSLT-PFTYSRFISGLCEV---K--NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVI 132 (493)
Q Consensus 60 ~~~a~~~~~~~~~~-~~~~~-~~~~~~ll~~~~~~---~--~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 132 (493)
.+.|..+|.+.... ...|+ ...|..+..++... | +.+.+. ..|.+..++.++.+ +.|..+...+.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~-------~~a~~~A~rAveld-~~Da~a~~~~g 345 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAA-------QKALELLDYVSDIT-TVDGKILAIMG 345 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHH-------HHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 46778888888722 22343 34444444443322 1 222222 56777777777763 55777777777
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHhccCchhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCC
Q 043480 133 DGLCKAKEFDKAVQAWEHMIENGIKPD-NKACAALVVGLCGDGKVDLAYELTVGAMKGKV-EFGVLIYNALISGFCRTGR 210 (493)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 210 (493)
.+..-.++++.|..+|++....+ || ..++........-.|+.++|.+.++...+..+ .....+....+..|+.++
T Consensus 346 ~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~- 422 (458)
T PRK11906 346 LITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP- 422 (458)
T ss_pred HHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-
Confidence 77788888999999999988763 44 45666666667778999999999998776531 112233334444666554
Q ss_pred HHHHHHHHHHHH
Q 043480 211 IRRAMAIKSFMK 222 (493)
Q Consensus 211 ~~~a~~~~~~~~ 222 (493)
.++|.++|-+-.
T Consensus 423 ~~~~~~~~~~~~ 434 (458)
T PRK11906 423 LKNNIKLYYKET 434 (458)
T ss_pred hhhhHHHHhhcc
Confidence 577777665433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.38 Score=44.48 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=28.4
Q ss_pred CHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043480 159 DNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWN 224 (493)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (493)
+...|..|......+|+++.|.+.|.+..+ +..|+-.|.-.|+.+...++.+.....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 444555555555555555555555554432 344444555555555555555544444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.36 Score=44.69 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=37.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 043480 334 DVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALIN 413 (493)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 413 (493)
+...|..|.......|+++-|++.|.+... +..++-.|...|+.+.-.++.+.....| -++....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~ 410 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQ 410 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHH
Confidence 444555555555555555555555544432 3344444455555555544444444432 1233333
Q ss_pred HHHhcCChhHHHHHHHH
Q 043480 414 GLCKSSRVSEAMHLYEE 430 (493)
Q Consensus 414 ~~~~~g~~~~a~~~~~~ 430 (493)
++...|+.++..+++.+
T Consensus 411 ~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 411 AALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHT-HHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 44444555554444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.31 Score=36.45 Aligned_cols=83 Identities=8% Similarity=0.121 Sum_probs=60.1
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS---IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
++..+-.-+....+.|++++|++.|+.+..+- |.+. ..-..++.++.+.+++++|...+++.++..+.....-|..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 34444456777888999999999999998863 4433 3455677889999999999999999998864433445555
Q ss_pred HHHHHhc
Q 043480 85 FISGLCE 91 (493)
Q Consensus 85 ll~~~~~ 91 (493)
.+.+++.
T Consensus 88 Y~~gL~~ 94 (142)
T PF13512_consen 88 YMRGLSY 94 (142)
T ss_pred HHHHHHH
Confidence 5555544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.098 Score=44.31 Aligned_cols=78 Identities=14% Similarity=0.188 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhcc-----CCCCcChhhHHH
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHP-----LGFSLTPFTYSR 84 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 84 (493)
.++..++..+...|+++.+...+++....+ |.+...|..++.+|.+.|+...|+..|+++.+ .|+.|.+.+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 357788999999999999999999999997 88899999999999999999999999998866 377787777666
Q ss_pred HHHH
Q 043480 85 FISG 88 (493)
Q Consensus 85 ll~~ 88 (493)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.83 Score=41.62 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=108.4
Q ss_pred HHHHHHHHHc-----CCHHHHHHHHHHHHHc-CCCcC-HhHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCC
Q 043480 304 NTVIEAFCKG-----GQTRRAYKLFEGMRRR-GIELD-VVTFTILIKAFLR---------EGSSAMAEKLLNQMRGMNLS 367 (493)
Q Consensus 304 ~~l~~~~~~~-----~~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~ 367 (493)
..++.+.... ...+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.+.-+...+.+ +
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~ 335 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-T 335 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-C
Confidence 5555554432 2356788889888722 23444 4445555544432 123456777777788877 7
Q ss_pred CCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHH
Q 043480 368 PDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD-VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD---EVTF 443 (493)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~ 443 (493)
.|+.....+..+....++++.|...|++.... .|| ..+|......+..+|+.++|.+.+++..+. .|. ..+.
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~ 411 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVI 411 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHH
Confidence 88888888888888889999999999999986 455 456666666777899999999999998774 453 4445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 444 KLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 444 ~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
...++.|+..+ .++|.+++-+-.+
T Consensus 412 ~~~~~~~~~~~-~~~~~~~~~~~~~ 435 (458)
T PRK11906 412 KECVDMYVPNP-LKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHcCCc-hhhhHHHHhhccc
Confidence 55566777665 6778777765443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.70 E-value=2.3 Score=41.62 Aligned_cols=180 Identities=13% Similarity=0.070 Sum_probs=105.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhcc
Q 043480 13 RAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEV 92 (493)
Q Consensus 13 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 92 (493)
..-+....+..-++-|+.+.+.-.... ..-.......+..+.+.|++++|...|-+.+..- .|. .++.-|...
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~-d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDE-DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHHHhcCH
Confidence 345667777788888887766532111 1112234445566778899999999888876531 222 223333322
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc
Q 043480 93 KNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCG 172 (493)
Q Consensus 93 ~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (493)
... ..-...++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|..- .-....+..+.+
T Consensus 411 q~I-----------knLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~ 475 (933)
T KOG2114|consen 411 QRI-----------KNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRK 475 (933)
T ss_pred HHH-----------HHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHH
Confidence 222 4455677778777655 55566678899999999888777665544 22211 113344555556
Q ss_pred cCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 173 DGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
.+-.++|.-+-..... +...... .+-..+++++|++.+..+.
T Consensus 476 snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 476 SNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred hChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 6666666655433322 2223222 3445678888888887764
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.024 Score=32.73 Aligned_cols=41 Identities=10% Similarity=0.073 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 45 IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
.+|..+..+|.+.|++++|.++|+++++.. +.|+..+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhh
Confidence 467889999999999999999999999875 45555555443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.36 Score=35.13 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=23.6
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 381 CKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
+..|+++.|++.|.+.+.. .+-....||.-..++.-.|+.++|+.=+++..+
T Consensus 54 aE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3444445555444444433 122334444444444444555554444444433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.67 E-value=1.3 Score=38.55 Aligned_cols=133 Identities=8% Similarity=0.152 Sum_probs=66.9
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHh--cC----ChhHHHHHHHHhccCCC---CcChhhHHHHHHHHhccCChhhH
Q 043480 28 AVHVFDEMTQSNCRVFSIDYNRFIGVLIR--HS----RFDLVQFYYQQMHPLGF---SLTPFTYSRFISGLCEVKNFTLI 98 (493)
Q Consensus 28 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a 98 (493)
.+.+++.+.+.|...+..+|.+....... .. ....+..+|+.|.+... .++...+..++.. ...+.+.-
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l 158 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEEL 158 (297)
T ss_pred HHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHH
Confidence 44566667777666665444443222222 12 23567777777766532 2333444444332 33333332
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHhccCC--HHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 043480 99 NILLDNMDKLALEVFHKMVSKGREPDVV--TYTIVIDGLCKAKE--FDKAVQAWEHMIENGIKPDNKACAALVVG 169 (493)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (493)
. +....+++.+...|+..+.. ....++........ ..++.++++.+.+.|+++....|..+.-.
T Consensus 159 ~-------~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 159 A-------ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred H-------HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 2 55666777777666554332 22233322222222 33666777777777766665555544433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.2 Score=42.58 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=47.7
Q ss_pred HHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHHHH
Q 043480 370 RILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI-----RGAHPDEVTFK 444 (493)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~ 444 (493)
..++..++..+...|+.+.+...+++++... +-+...|..++.+|.+.|+...|+..++++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3455666666666666666666666666553 33556666666666666666666666666532 45566555555
Q ss_pred HHHHH
Q 043480 445 LLIGG 449 (493)
Q Consensus 445 ~l~~~ 449 (493)
.+..+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.3 Score=37.68 Aligned_cols=144 Identities=16% Similarity=0.098 Sum_probs=85.6
Q ss_pred HHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH
Q 043480 168 VGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLD 247 (493)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 247 (493)
......|++.+|...|....... +-+...--.+..+|...|+.+.|..++..+....-.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34456778888888888777654 33455566677888888888888888887764421222222223344444444444
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHHcC
Q 043480 248 EAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAK-GLRDKVSYNTVIEAFCKGG 314 (493)
Q Consensus 248 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 314 (493)
+...+-+..-.. +.|...-..+...+...|+.+.|.+.+-.++... ...|...-..+++.+.-.|
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444444432 2355666667777777888888877776666542 2234445555555555444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.012 Score=31.68 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=21.3
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHH
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAV 29 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 29 (493)
|+..|.|+.+|+.+...|...|++++|+
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4566777888888888888888887775
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.68 Score=39.85 Aligned_cols=154 Identities=11% Similarity=0.030 Sum_probs=109.8
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHH----HHHHHHHHcCCH
Q 043480 276 CNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFT----ILIKAFLREGSS 351 (493)
Q Consensus 276 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~ 351 (493)
.-.|+..+|-..++++++..+. |..+++..-.++...|+.+.....++++... ..++...|+ ...-++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467778888888888887664 8888888888899999999888888888755 233443332 333345578999
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 043480 352 AMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQ---GITPDVISYNALINGLCKSSRVSEAMHLY 428 (493)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 428 (493)
++|++.-++..+.+ +.|...-.+..+.+-..|++.++.++..+-... +.-.-...|-...-.+...+.++.|+.+|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999988888876 677777788888888889999998877665432 11111223444445566678999999999
Q ss_pred HHHH
Q 043480 429 EEMQ 432 (493)
Q Consensus 429 ~~~~ 432 (493)
++-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7653
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.83 Score=34.73 Aligned_cols=124 Identities=15% Similarity=0.098 Sum_probs=55.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 043480 340 ILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSS 419 (493)
Q Consensus 340 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 419 (493)
.++..+...+.......+++.+.+.+ ..+....+.++..|++.. .......+.. .++......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444455555555555555444 244445555555555432 2222222221 112223334555555555
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043480 420 RVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQE-KKLELACRLWDQMMEKGFTLDKTVSAALIEAIH 486 (493)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 486 (493)
-++++..++.++.. .. ..+..+... ++++.|.++..+- .+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~-----~~----~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN-----FK----DAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC-----HH----HHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 55555555555422 11 122222222 5555555555542 24556665555543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.34 E-value=2.6 Score=39.80 Aligned_cols=36 Identities=8% Similarity=0.038 Sum_probs=16.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 043480 340 ILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTI 376 (493)
Q Consensus 340 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 376 (493)
.+...+....++++|...|..+.+.+ ..+..+|..+
T Consensus 310 El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 310 ELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 33444444555555555555555433 2333344333
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.59 Score=35.03 Aligned_cols=83 Identities=6% Similarity=0.069 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCC--CcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 043480 45 IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF--SLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGRE 122 (493)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~ 122 (493)
..+..-.....+.|++++|.+.|+.+..+-. +-...+...++.++.+.+++ ..|...+++.++....
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y-----------~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDY-----------EEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCH-----------HHHHHHHHHHHHhCCC
Confidence 3344445566788999999999999877621 22335566788888899999 5666777777765332
Q ss_pred CCHhhHHHHHHHHhcc
Q 043480 123 PDVVTYTIVIDGLCKA 138 (493)
Q Consensus 123 ~~~~~~~~l~~~~~~~ 138 (493)
....-|...+.+++.-
T Consensus 80 hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYY 95 (142)
T ss_pred CCCccHHHHHHHHHHH
Confidence 2234555555555443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.022 Score=30.57 Aligned_cols=32 Identities=9% Similarity=0.249 Sum_probs=26.4
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 043480 32 FDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQ 64 (493)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 64 (493)
|+++++.+ |.++..|+.+..+|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56667766 788889999999999999998886
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.13 E-value=2 Score=37.32 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=13.5
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 043480 448 GGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~ 467 (493)
..+.+.+++++|..+++-..
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34556777888877777554
|
It is also involved in sporulation []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.9 Score=36.72 Aligned_cols=141 Identities=16% Similarity=0.087 Sum_probs=76.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHH
Q 043480 310 FCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTA 389 (493)
Q Consensus 310 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 389 (493)
....|++.+|..+|......... +......+..+|...|+.+.|..++..+...--.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34556666777767666655322 34455566666777777777777776654321111122222334444444444444
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC
Q 043480 390 YGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR--GAHPDEVTFKLLIGGLVQEK 454 (493)
Q Consensus 390 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g 454 (493)
..+-++.-.. +-|...-..+...+...|+.++|.+.+-.+.+. |.. |...-..++..+.-.|
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 4444444432 225555556666777777777777766555443 222 4555555555555555
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.057 Score=29.47 Aligned_cols=26 Identities=8% Similarity=0.102 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHh
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMT 36 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 36 (493)
+|..|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777743
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.04 E-value=3.9 Score=40.19 Aligned_cols=145 Identities=14% Similarity=0.073 Sum_probs=87.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
....+..+.+.|++++|..-|-+.+..- .|+ .++.-|....+..+.-.+++.+.+.|. .+...-..|+.+|.+
T Consensus 371 ~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiK 443 (933)
T KOG2114|consen 371 HRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIK 443 (933)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHH
Confidence 3344556678899999999887776542 332 356666777778888888999988884 445556788999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVV--TYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVG 169 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (493)
.++.+.. ++.++.+. ...+ -....+..+.+.+-.++|.-+-.+... ....... .
T Consensus 444 lkd~~kL---------------~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---l 499 (933)
T KOG2114|consen 444 LKDVEKL---------------TEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---L 499 (933)
T ss_pred hcchHHH---------------HHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---H
Confidence 9998433 23333211 1111 244455566666666666554433322 1222222 2
Q ss_pred HhccCchhHHHHHHHHHH
Q 043480 170 LCGDGKVDLAYELTVGAM 187 (493)
Q Consensus 170 ~~~~~~~~~a~~~~~~~~ 187 (493)
+-..|++++|.+.+..+.
T Consensus 500 le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 500 LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHhcCHHHHHHHHhcCC
Confidence 334567777777766653
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.90 E-value=1.9 Score=35.92 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=33.8
Q ss_pred ccCChHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 043480 242 DEVMLDEAEKLVMEMESCGI--EPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFC 311 (493)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (493)
+.|++++|.+.|+.+.+... +-...+.-.++-++.+.++++.|+..+++.+...+......|-..|.+++
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 45555666665555553320 11223333444455556666666666655555544444344444444433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.87 E-value=1.4 Score=38.45 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 443 FKLLIGGLVQEKKLELACRLWDQM 466 (493)
Q Consensus 443 ~~~l~~~~~~~g~~~~a~~~~~~~ 466 (493)
...+.+.|...|+.+.|+.-|+.+
T Consensus 249 ~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 249 LLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHhcccHhHHHHHHHHH
Confidence 334445555555555555555444
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.73 Score=35.95 Aligned_cols=116 Identities=13% Similarity=0.144 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh----------hHHHHHHHHhccCCCCcC-hhhHHHHHHHHhccC
Q 043480 25 IDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRF----------DLVQFYYQQMHPLGFSLT-PFTYSRFISGLCEVK 93 (493)
Q Consensus 25 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~ 93 (493)
++.|++.++.....+ |.|...++.-..++....++ ++|+.-|++.+.. .|+ ..++..+..++...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 567788887766666 77787777766666554332 3444445555443 454 356677777776554
Q ss_pred ----ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 043480 94 ----NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG 155 (493)
Q Consensus 94 ----~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (493)
+..+|...+ ++|.+.|+.... .+|+...|+.-+... ++|-+++.++.+.+
T Consensus 84 ~l~~d~~~A~~~F----~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 84 FLTPDTAEAEEYF----EKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HH---HHHHHHHH----HHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred hhcCChHHHHHHH----HHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 334444444 778888988888 588889999888765 34667777776654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.78 E-value=1.4 Score=33.81 Aligned_cols=52 Identities=19% Similarity=0.068 Sum_probs=24.6
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 043480 347 REGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQ 399 (493)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 399 (493)
..++.+.+..+++.+.-.. |-....-..-...+...|++.+|..+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4455666666665555432 111111122222344556666666666665543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.76 E-value=4.6 Score=39.67 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=43.2
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-------hhHHHHHHHHhccCCCCcChh
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSR-------FDLVQFYYQQMHPLGFSLTPF 80 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~ 80 (493)
+..+| ++|--+.|+|++++|.++..+.... .......+-..+..+....+ -+....-|++..+.....|++
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 34456 5777899999999999999555443 24445667777777766533 235666677666553323553
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.39 Score=40.16 Aligned_cols=103 Identities=19% Similarity=0.303 Sum_probs=52.3
Q ss_pred ChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhH
Q 043480 299 DKVSYNTVIEAFCKG-----GQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILY 373 (493)
Q Consensus 299 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 373 (493)
|-.+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|+..+-+-. +.|.. ++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n-vf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN-VF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-HH
Confidence 455555555555432 344444445555666666666666666655442211 01110 11
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043480 374 TTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR 420 (493)
Q Consensus 374 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (493)
..+.--|- .+-+-+.+++++|...|+-||..+-..|+.++.+.+-
T Consensus 129 Q~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11111111 1223466777777777777777777777777765553
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.69 E-value=1.5 Score=33.68 Aligned_cols=86 Identities=12% Similarity=-0.064 Sum_probs=55.6
Q ss_pred cchhhHHHHH---HHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 7 AQRLIYRAQI---SNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 7 ~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
.+..+.+.|+ ..-.+.++.+++..+++.+.-.. |..+..-..-...++.+|+|.+|+.+|+++.... |....-.
T Consensus 5 C~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~k 81 (160)
T PF09613_consen 5 CSDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAK 81 (160)
T ss_pred CcHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHH
Confidence 3444555554 44567799999999999988754 3333333444567889999999999999987653 3333333
Q ss_pred HHHHHH-hccCCh
Q 043480 84 RFISGL-CEVKNF 95 (493)
Q Consensus 84 ~ll~~~-~~~~~~ 95 (493)
.|+..| ...++.
T Consensus 82 ALlA~CL~~~~D~ 94 (160)
T PF09613_consen 82 ALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHHHcCCh
Confidence 444333 344443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.6 Score=33.11 Aligned_cols=125 Identities=12% Similarity=0.116 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc
Q 043480 304 NTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKS 383 (493)
Q Consensus 304 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (493)
..++..+...+.+......++.+...+. .+....+.++..|++.. ..+....+.. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3445555555566666666666655542 35555666666665442 2222233221 11222233455555556
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043480 384 REIGTAYGVFLDMVEQGITPDVISYNALINGLCKS-SRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 384 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 451 (493)
+-++++..++.++-. +...+..+... ++++.|.+++.+- .++..|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 666666666655421 12222223323 5666666655541 14556666655554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.89 Score=38.16 Aligned_cols=106 Identities=20% Similarity=0.190 Sum_probs=62.2
Q ss_pred CCHHhHHHHHHHHhc-----cCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043480 158 PDNKACAALVVGLCG-----DGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVT 232 (493)
Q Consensus 158 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 232 (493)
.|..+|...+..+.. .+.++-....+..|.+.|+..|..+|+.|+..+-+..- .|.. .
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n-v 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN-V 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-H
Confidence 355666666555532 34455555556666666666666666666655433211 1111 1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHH
Q 043480 233 YNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLD 282 (493)
Q Consensus 233 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 282 (493)
+....-.|-+ +-+-++.++++|...|+-||..+-..+++++.+.+-.-
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccH
Confidence 1111112221 23457888999999999999999999999988877543
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.33 E-value=2.6 Score=37.50 Aligned_cols=88 Identities=3% Similarity=-0.077 Sum_probs=68.2
Q ss_pred ccccCcchhhHHHHHHHHHHcCC------------hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGL------------IDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQ 69 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 69 (493)
++..|.|..+|..++..--..-. .+.-+.+++++++.+ +.+...+..++..+.+..+.++..+.+++
T Consensus 12 v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~ 90 (321)
T PF08424_consen 12 VRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEE 90 (321)
T ss_pred HHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 45678899999998865544322 456678899999886 67888888899999999899999999999
Q ss_pred hccCCCCcChhhHHHHHHHHhc
Q 043480 70 MHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 70 ~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
++... +-+...|...+.....
T Consensus 91 ~l~~~-~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 91 LLFKN-PGSPELWREYLDFRQS 111 (321)
T ss_pred HHHHC-CCChHHHHHHHHHHHH
Confidence 98874 4467778777766554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.13 Score=27.98 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 442 TFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 442 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
+|..|...|.+.|++++|.+++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888553
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.94 E-value=2.1 Score=32.34 Aligned_cols=67 Identities=9% Similarity=-0.032 Sum_probs=48.3
Q ss_pred cchhhHHHHHHH---HHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 043480 7 AQRLIYRAQISN---LVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG 74 (493)
Q Consensus 7 ~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (493)
.+..+.+.|+.. -...++++++..+++.+.-.. |.....-..-...+...|+|.+|..+|++..+.+
T Consensus 5 Cs~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 5 CSNRLLGGLIEVLMYALRSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 344555555544 456799999999999988754 3333333444567889999999999999998764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.9 Score=36.12 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF--SIDYNRFIGVLIRHSRFDLVQFYYQQMHPL 73 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (493)
..+..++..|.+.|+.+.|++.|.++.+....+. ...+..++++....+++..+.....+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4577899999999999999999999887643322 445677888889999999998888887654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.17 Score=26.96 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCC
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSN 39 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 39 (493)
.++..+...|...|++++|++.|+++.+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 456667777777777777777777776643
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.66 E-value=2.7 Score=32.77 Aligned_cols=134 Identities=15% Similarity=0.156 Sum_probs=81.1
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccC--chhHHHHHHHHH
Q 043480 109 ALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDG--KVDLAYELTVGA 186 (493)
Q Consensus 109 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~ 186 (493)
-.+..+.+...+++|+...+..++..+.+.|++... ..++..++-+|.......+-.+.... -..-+.+++.++
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 346666777778899999999999999999987654 44555566677666665554333221 122333333333
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 043480 187 MKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMES 258 (493)
Q Consensus 187 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (493)
. ..+..+++.+...|++-+|+++.+...... ......++.+....+|...-..+++-...
T Consensus 89 ~--------~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 G--------TAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h--------hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 135566778888888888888877653221 12223455555566665555555555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.18 Score=26.89 Aligned_cols=30 Identities=10% Similarity=0.146 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCC
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSN 39 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 39 (493)
.+|..++..|...|++++|+..|+++++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 456777777777788888888777777654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.57 E-value=6.1 Score=36.55 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHccCCHhHHHHHHHHHHh
Q 043480 340 ILIKAFLREGSSAMAEKLLNQMRGMNLS-PDRILYTTIIDCLCKSREIGTAYGVFLDMVE 398 (493)
Q Consensus 340 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 398 (493)
.+..++-+.|+.++|.+.++++.+.... ....+...|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3444445566666666666666543211 1223445566666666666666666665543
|
The molecular function of this protein is uncertain. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.56 E-value=3.8 Score=34.20 Aligned_cols=199 Identities=16% Similarity=0.042 Sum_probs=90.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHH-H
Q 043480 267 SYNQLLKGLCNSNQLDKAYMFMVKKMEA-KGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIK-A 344 (493)
Q Consensus 267 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 344 (493)
.+......+...+.+..+...+...... ........+......+...+++..+.+.+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3334444444444455444444444331 111123333334444444444555555555554432221 111111111 4
Q ss_pred HHHcCCHHHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCh
Q 043480 345 FLREGSSAMAEKLLNQMRGMNL--SPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITP-DVISYNALINGLCKSSRV 421 (493)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 421 (493)
+...|+++.+...+........ ......+......+...++.+.+...+....+.. +. ....+..+...+...+++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccH
Confidence 5555566666665555543110 0122222333333445556666666666665541 22 244455555556666666
Q ss_pred hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 422 SEAMHLYEEMQIRGAHPD-EVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 422 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
+.|...+...... .|+ ...+..+...+...+..+.+...+.+..+.
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666553 222 333444444444555566666666655543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.50 E-value=2.9 Score=32.61 Aligned_cols=133 Identities=14% Similarity=0.172 Sum_probs=58.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 043480 216 AIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAK 295 (493)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 295 (493)
++++.+.+.+++|+...+..+++.+.+.|.+..... +...++-+|.......+-.+.. ....+.++--+|...-
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHh
Confidence 444455555666666666666666666666544333 2333333444333333222211 1222222222222210
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043480 296 GLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMR 362 (493)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 362 (493)
...+..+++.+...|++-+|.++.+..... +......++.+..+.+|...-..+++-..
T Consensus 89 ----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 89 ----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 012344455555566666666555544221 11222344455455555544444444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.26 Score=42.37 Aligned_cols=57 Identities=9% Similarity=0.041 Sum_probs=47.8
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL 73 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (493)
..-|.++|.+++|+.+|....... |.+++.+..-..+|.+...+..|..-.+..+..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL 160 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 456889999999999999988865 668899998999999999998888777766543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.17 E-value=12 Score=38.73 Aligned_cols=104 Identities=16% Similarity=0.148 Sum_probs=53.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCC
Q 043480 343 KAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVI--SYNALINGLCKSSR 420 (493)
Q Consensus 343 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~ 420 (493)
..+...+.+++|--.|+..-+ ....+.+|..+|++.+|..+..++... -+.. +-..|+.-+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHccc
Confidence 333445556665555543322 123455666677777777776665431 1111 22456666667777
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 421 VSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQM 466 (493)
Q Consensus 421 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 466 (493)
+-+|-++..+..+. |. -.+..|++...|++|.++....
T Consensus 1015 h~eAa~il~e~~sd---~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD---PE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred chhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 77777777666542 11 1223344444555555554433
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=93.06 E-value=1.3 Score=30.32 Aligned_cols=45 Identities=9% Similarity=0.146 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043480 388 TAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQ 432 (493)
Q Consensus 388 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 432 (493)
+..+-++.+....+.|++.+..+.+++|.+.+|+..|.++|+-..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444455544555555555555555555555555555555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.73 E-value=8.3 Score=35.74 Aligned_cols=83 Identities=11% Similarity=0.085 Sum_probs=58.6
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGIT-PDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD-EVTFKLLIGG 449 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~ 449 (493)
+=..+..++.+.|+.++|.+.++++.+.... .+..+...|+.++...+.+.++..++.+..+...+.+ ..+|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 3345777778899999999999999864211 2345677899999999999999999999865433222 4456655433
Q ss_pred HHhcC
Q 043480 450 LVQEK 454 (493)
Q Consensus 450 ~~~~g 454 (493)
....+
T Consensus 341 aRav~ 345 (539)
T PF04184_consen 341 ARAVG 345 (539)
T ss_pred HHhhc
Confidence 33333
|
The molecular function of this protein is uncertain. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.71 E-value=11 Score=36.90 Aligned_cols=319 Identities=12% Similarity=0.063 Sum_probs=169.6
Q ss_pred HhccCCHHHHHHHHHHHH--------HCCCCCCHHhHHH-----HHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHH
Q 043480 135 LCKAKEFDKAVQAWEHMI--------ENGIKPDNKACAA-----LVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNAL 201 (493)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (493)
+.+..++++-..+...+. ..|++.+..-|.. ++.-+...+.+..|+++-..+...-.. ...+|...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHH
Confidence 344555665555444432 3466666655543 466677778888888887666532111 15566667
Q ss_pred HHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC----CChhhHHHHHHH
Q 043480 202 ISGFCRTGR---IRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIE----PDVYSYNQLLKG 274 (493)
Q Consensus 202 ~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~ 274 (493)
..-+.+..+ -+.+..+-+++... . -+..+|..+.+.....|+.+-|..+++.=...+.. .+..-+...+.-
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~k 555 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKK 555 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHH
Confidence 777776632 22233333333322 2 34456777777777888988888877653222100 112223334444
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCC-----------ChhhHHHHHH---------HHHHcCCHHHHHHHHH--HHHH-cCC
Q 043480 275 LCNSNQLDKAYMFMVKKMEAKGLR-----------DKVSYNTVIE---------AFCKGGQTRRAYKLFE--GMRR-RGI 331 (493)
Q Consensus 275 ~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~---------~~~~~~~~~~a~~~~~--~~~~-~~~ 331 (493)
....|+.+-...++..+.+.-... ....|.-+++ .|....+. .+..-|. .... .-+
T Consensus 556 aies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~ 634 (829)
T KOG2280|consen 556 AIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNH-QALASFHLQASYAAETI 634 (829)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccch-hhhhhhhhhhhhhhhhh
Confidence 555666655555544443321100 0001111111 01111111 1111110 0000 001
Q ss_pred CcCHhHHHHHHHHHHHcCCHH----------HHHHHHHHHHh-CCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCC
Q 043480 332 ELDVVTFTILIKAFLREGSSA----------MAEKLLNQMRG-MNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQG 400 (493)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 400 (493)
.+-.........++.+..... +-+.+.+.+.. .+..-...+.+--+.-+...|+..+|.++-.+..
T Consensus 635 ~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--- 711 (829)
T KOG2280|consen 635 EGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--- 711 (829)
T ss_pred cccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC---
Confidence 111222333444444433311 11222222222 2323344455666667777899999988887765
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 401 ITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 401 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 467 (493)
-||-..|..=+.+++..+++++-+++-+... ++.-|.....+|.+.|+.++|.+++.+..
T Consensus 712 -ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 712 -IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred -CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 5688888888999999999998877666543 24556778899999999999999988773
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.6 Score=30.32 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 388 TAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 388 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444445555555556666666666666666666666666665543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.66 E-value=14 Score=38.24 Aligned_cols=131 Identities=11% Similarity=0.174 Sum_probs=58.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhh-CC--CCCChhhHHHHHHHHHhcCC-hhHHHHHHHHhccCCCCcChh--hHHHHHH
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQ-SN--CRVFSIDYNRFIGVLIRHSR-FDLVQFYYQQMHPLGFSLTPF--TYSRFIS 87 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~ll~ 87 (493)
+.+.-+++++++.+|.++..+-+- .+ ...++..+..-+.++.++-+ .+-...++-.+...++..+.. ++.+-.+
T Consensus 682 a~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k~ 761 (1265)
T KOG1920|consen 682 AKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGKQ 761 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhccccccccce
Confidence 456777888888888776654321 11 11223334444445555433 333333344443222211110 1111111
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC--CHHHHHHHHHHHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAK--EFDKAVQAWEHMIE 153 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 153 (493)
.|......+ +-.....+.......+ ..|+ .-...+|..|.+.+ .++.++....+...
T Consensus 762 ~~~~r~~~d-------~kv~~vc~~vr~~l~~-~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 762 VYMSRDPYD-------NKVNSVCDAVRNALER-RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred eEEeccchh-------hHHHHHHHHHHHHHhh-cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 222222221 1112223333333333 3455 45556778888877 66777777666664
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.61 E-value=6.6 Score=34.34 Aligned_cols=128 Identities=10% Similarity=0.218 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCCCcCHhHHHHHHHHHHH--c----CCHHHHHHHHHHHHhCCC---CCCHHhHHHHHHHHHccCC---
Q 043480 318 RAYKLFEGMRRRGIELDVVTFTILIKAFLR--E----GSSAMAEKLLNQMRGMNL---SPDRILYTTIIDCLCKSRE--- 385 (493)
Q Consensus 318 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~--- 385 (493)
+...+++.|.+.|..-+..++.+....... . ....++..+++.|++... .++...+..++.. ...+
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344555666666655555444332222211 1 123455666666665321 1223333333322 2222
Q ss_pred -HhHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043480 386 -IGTAYGVFLDMVEQGITPDVI--SYNALINGLCKSSR--VSEAMHLYEEMQIRGAHPDEVTFKLLI 447 (493)
Q Consensus 386 -~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~ 447 (493)
.+.++.+|+.+.+.|+..+-. ....++..+..... ...+.++++.+.+.|+++....|..+.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 234555566665555543322 12222221111111 234555666666666666555555444
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.27 Score=28.17 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=21.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCC
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSN 39 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 39 (493)
.|+.+|...|+.+.|+++++++...+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47888888888888888888888654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.47 E-value=3.6 Score=35.33 Aligned_cols=104 Identities=12% Similarity=0.107 Sum_probs=62.9
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhh
Q 043480 191 VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNG---CEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYS 267 (493)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 267 (493)
.+.+..+...++..-....+++.+..++-++.... ..|+...+ .+++.+ ..-++++++.++..=...|+-||.++
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 34444444555555555666777777666665321 11221111 222222 22356677777777777888888888
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 043480 268 YNQLLKGLCNSNQLDKAYMFMVKKMEAKG 296 (493)
Q Consensus 268 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 296 (493)
++.+++.+.+.+++.+|..+...++.+..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 88888888888888888777766665433
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.25 Score=24.47 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHH
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFD 33 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~ 33 (493)
....+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44556677777777777776664
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.91 E-value=9.4 Score=34.55 Aligned_cols=192 Identities=10% Similarity=0.030 Sum_probs=102.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCC--------CcChhhHHHHH
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF--------SLTPFTYSRFI 86 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~ll 86 (493)
.+.+..+.|+++...+......... ++...+..+... ..++++++....+.+...-. ......|..++
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~--~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDS--PEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCC--hhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4677889999999666665554322 334444444433 78999998888888765310 01111222222
Q ss_pred HHHhccCChhhHHHHHHHH---H---HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 043480 87 SGLCEVKNFTLINILLDNM---D---KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN 160 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~---~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 160 (493)
.. ....+.+++..+.... . ....+.++.-... ..++...|..++..-. -++..+ .......
T Consensus 80 ~l-q~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~-~~~~~~~~~~il~~R~---------~~l~~~--~~~~~~~ 146 (352)
T PF02259_consen 80 KL-QQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPN-MQDDFSVWEPILSLRR---------LVLSLI--LLPEELA 146 (352)
T ss_pred HH-hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHH---------HHHhcc--cchhHHH
Confidence 21 1222333333332111 1 1222222222221 3445555555543210 011101 1122345
Q ss_pred HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 161 KACAALVVGLCGDGKVDLAYELTVGAMKGKVEF---GVLIYNALISGFCRTGRIRRAMAIKSFMKW 223 (493)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 223 (493)
.++..+...+.+.|.++.|...+..+....... .+.+.-.-+...-..|+..+|+..++....
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677888888888999999998888887643111 334444556667778888888888877776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=91.85 E-value=1.6 Score=29.88 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043480 422 SEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEA 484 (493)
Q Consensus 422 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 484 (493)
=++.+-++.+...++.|++.+..+.+++|.+.+|+..|.++++-.+.+. ..+..+|..+++-
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lqe 85 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQE 85 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHHH
Confidence 3455555566666666677777777777777777777777776665331 1133345544443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.80 E-value=2 Score=34.23 Aligned_cols=96 Identities=11% Similarity=0.059 Sum_probs=68.7
Q ss_pred HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHH--H
Q 043480 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD--VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFK--L 445 (493)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~--~ 445 (493)
..+..+...|.+.|+.+.|.+.|.++.+....|. ...+-.+++.....|++..+...+.+....--.+ |...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5788999999999999999999999988644433 3456778888889999999999988875431122 222222 2
Q ss_pred HH--HHHHhcCCHHHHHHHHHHH
Q 043480 446 LI--GGLVQEKKLELACRLWDQM 466 (493)
Q Consensus 446 l~--~~~~~~g~~~~a~~~~~~~ 466 (493)
.. -.+...|++..|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 22 3345678888888877665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.69 E-value=5.2 Score=31.13 Aligned_cols=133 Identities=11% Similarity=0.066 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH-H--
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSID-YNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR-F-- 85 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l-- 85 (493)
..|..-++ ..+.|..++|+.-|..+.+.|...=++. ...........|+-..|...|.++-.....|.+.--.. |
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 33443333 4566788888888888877663322221 12233456677888888888888766543343321111 1
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 86 ISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
.-.+...|.+ ++...-.+.+...|.+--...-..|.-+-.+.|++..|...|..+...
T Consensus 139 a~lLvD~gsy-----------~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 139 AYLLVDNGSY-----------DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHhccccH-----------HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1123345555 333344444444333333445556666667777777777777777654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.66 E-value=14 Score=35.97 Aligned_cols=152 Identities=16% Similarity=0.088 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHH--HH-HHccCCHHHHHHHHHHHHHc----CCCCChhhHHHHHHHHHHcC----
Q 043480 246 LDEAEKLVMEMESCGIEPDVYSYNQLL--KG-LCNSNQLDKAYMFMVKKMEA----KGLRDKVSYNTVIEAFCKGG---- 314 (493)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~---- 314 (493)
...+.+.++...+.|.. ........+ .+ +....+.+.|+..|..+... .....+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 34566666666655421 111111111 11 33455666666666666541 00012333444445554432
Q ss_pred -CHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH--ccCCHhHHH
Q 043480 315 -QTRRAYKLFEGMRRRGIELDVVTFTILIKAFLR-EGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLC--KSREIGTAY 390 (493)
Q Consensus 315 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~ 390 (493)
+...|..++......|.+ +....-..+..... ..+...|..+|...-+.| .+....+..++.... ...+...|.
T Consensus 307 ~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred ccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 344455555555554422 22222221111111 134455555555555544 222222222211111 122455555
Q ss_pred HHHHHHHhCC
Q 043480 391 GVFLDMVEQG 400 (493)
Q Consensus 391 ~~~~~~~~~~ 400 (493)
.++.+..+.|
T Consensus 385 ~~~k~aA~~g 394 (552)
T KOG1550|consen 385 AYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHcc
Confidence 5555555554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.71 Score=24.40 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 442 TFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 442 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
.+..+...+...|++++|.+.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445555566666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.58 E-value=5.4 Score=31.06 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=22.5
Q ss_pred ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043480 242 DEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKME 293 (493)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 293 (493)
..|.++......+.+...+-+.-...-..|.-+-.+.|++..|...|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4444444444444443333222222333344444455555555555554444
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.51 E-value=5.6 Score=34.27 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=49.5
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHH
Q 043480 334 DVVTFTILIKAFLREGSSAMAEKLLNQMRGMN---LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNA 410 (493)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 410 (493)
...+...++..-.....++.++..+-.++... ..|+... ..+++.+. .-+.++++.++..=+..|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 34444444444444455566655555544310 0111111 11222222 2345566666666666666666666666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 043480 411 LINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
+|+.+.+.+++.+|.++...|..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 66666666666666666655544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.45 E-value=7.4 Score=32.40 Aligned_cols=86 Identities=20% Similarity=0.107 Sum_probs=39.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChh
Q 043480 345 FLREGSSAMAEKLLNQMRGMNLSP-DRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD-VISYNALINGLCKSSRVS 422 (493)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 422 (493)
+...++.+.+...+....+.. +. ....+..+...+...++++.+...+...... .|+ ...+..+...+...+..+
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 253 (291)
T COG0457 177 LEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYE 253 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHH
Confidence 334445555555554444432 12 2344444445555555555555555555543 222 223333333333444556
Q ss_pred HHHHHHHHHHH
Q 043480 423 EAMHLYEEMQI 433 (493)
Q Consensus 423 ~a~~~~~~~~~ 433 (493)
.+...+.+...
T Consensus 254 ~~~~~~~~~~~ 264 (291)
T COG0457 254 EALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHH
Confidence 66665555554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.82 Score=24.23 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 442 TFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 442 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
+|..+..++...|++++|...++++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 444555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.56 Score=26.30 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhh
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQ 37 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 37 (493)
.+++.|...|...|++++|+++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566777777777777777777776653
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=91.04 E-value=3.9 Score=28.47 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 423 EAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 423 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
+..+-++.+...++.|++.+..+.+++|.+..++..|.++++..+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555555666666666666666666666666666665554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=91.01 E-value=3.7 Score=37.48 Aligned_cols=124 Identities=10% Similarity=0.052 Sum_probs=77.4
Q ss_pred HHHHHHcCCHHHHHHHHHHH-HHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 043480 307 IEAFCKGGQTRRAYKLFEGM-RRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSRE 385 (493)
Q Consensus 307 ~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 385 (493)
|.--...|+...|.+-+... ....-.|+.. ......+...|+++.+...+....+. +.....+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 34444567776665544444 4332233333 33334456788888888887766542 23455677788888888888
Q ss_pred HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 386 IGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 386 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
++.|..+-..|+...+. +...........-..|-++++.-.|++....
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 88888888888866544 3343333333344567788888888887664
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.99 E-value=2.3 Score=34.39 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=51.8
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRG--AHPDEVTFKLLIGG 449 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~ 449 (493)
+.+..+..+.+.+.+.+++...+.-++.. +-|...-..++..++-.|++++|..-++-.-... ..+-..+|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455667777888888888888777653 3355566677888888899998887777664421 22345666666654
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=90.75 E-value=18 Score=35.76 Aligned_cols=118 Identities=9% Similarity=0.023 Sum_probs=71.5
Q ss_pred ccCCHHHHHHHHHHHHHCC-CCCCH--HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 043480 137 KAKEFDKAVQAWEHMIENG-IKPDN--KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRR 213 (493)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 213 (493)
...+.+.|..++....... ..+.. .....+.......+..+++...+...... ..+......-+......++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHH
Confidence 3456788888888875432 22222 22333333333333356666666665433 2244555556666678899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 043480 214 AMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEME 257 (493)
Q Consensus 214 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 257 (493)
+...+..|.... .-...-.-=+.+++...|+.++|...|+.+.
T Consensus 331 ~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 988888886542 2222333345566666899999999998874
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.46 E-value=10 Score=32.37 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHH
Q 043480 408 YNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK-----GFTLDKTVS 478 (493)
Q Consensus 408 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~ 478 (493)
++...+.|..+|.+.+|.++.++....+ +.+...+..|+..+...||--.|.+-++++.+. |+..|..+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 4555678889999999999999998753 228888999999999999977777777766543 777666554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.88 Score=25.48 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 440 EVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
..+++.|...|...|++++|..++++..+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356777888888888888888888887653
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.08 E-value=14 Score=33.39 Aligned_cols=63 Identities=13% Similarity=0.056 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 043480 301 VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIEL---DVVTFTILIKAFLREGSSAMAEKLLNQMRG 363 (493)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 363 (493)
.+|..+...+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|...++...+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666666666666665533111 223333334444556666666666665554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.69 Score=26.52 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=12.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 043480 446 LIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 446 l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555554
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.90 E-value=3.9 Score=32.12 Aligned_cols=115 Identities=14% Similarity=0.163 Sum_probs=61.2
Q ss_pred hhHHHHHHHHhccCCCCcChhhHHHHHHHH---hccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHH
Q 043480 60 FDLVQFYYQQMHPLGFSLTPFTYSRFISGL---CEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDV-VTYTIVIDGL 135 (493)
Q Consensus 60 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~ 135 (493)
++.|.+.++.....+ +.|...++.-..++ +...+..++..++ ++|+.-|++.+. +.|+. .++..+..+|
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~mi----edAisK~eeAL~--I~P~~hdAlw~lGnA~ 79 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMI----EDAISKFEEALK--INPNKHDALWCLGNAY 79 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHH----HHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHH----HHHHHHHHHHHh--cCCchHHHHHHHHHHH
Confidence 455666666644444 45555444444444 3444445555555 677888888877 45543 4555566665
Q ss_pred hccC----C-------HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhC
Q 043480 136 CKAK----E-------FDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKG 189 (493)
Q Consensus 136 ~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 189 (493)
...+ + |++|.+.|++.... .|+...|..-+.... .|-+++.++.+.
T Consensus 80 ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 80 TSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 5433 2 45555555555554 678888877776653 344555555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.62 E-value=9.5 Score=30.72 Aligned_cols=73 Identities=14% Similarity=0.093 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCCHHHHH
Q 043480 142 DKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKG---KVEFGVLIYNALISGFCRTGRIRRAM 215 (493)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~ 215 (493)
+.|.+.|-.+...+.--++.....+...|. ..+.+++..++..+++. +-.+|+..+..|++.+.+.++++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 556666666655544434444444444443 45666666666666542 22556777777777777777776663
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.53 E-value=10 Score=30.88 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 441 VTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.||-.|.+-+...|+.++|..+|+-+...
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 44555566666666666666666666543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.33 E-value=1 Score=23.77 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhC
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQS 38 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 38 (493)
.+|..+...|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677788888888888888888887764
|
... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.88 E-value=8.6 Score=29.18 Aligned_cols=19 Identities=5% Similarity=0.130 Sum_probs=9.6
Q ss_pred HccCCHhHHHHHHHHHHhC
Q 043480 381 CKSREIGTAYGVFLDMVEQ 399 (493)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~ 399 (493)
...|++++|..+|+++.+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 4445555555555555443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.50 E-value=26 Score=34.19 Aligned_cols=274 Identities=15% Similarity=0.081 Sum_probs=155.9
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHH----H-HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHcc
Q 043480 176 VDLAYELTVGAMKGKVEFGVLIYNALIS----G-FCRTGRIRRAMAIKSFMKW-------NGCEPDLVTYNAILNYYCDE 243 (493)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~ 243 (493)
...+...++...+.+ +...-..+.. + +....+.+.|+.+|+.+.. .+ .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456788888877765 2222222222 2 3356789999999988876 44 233455566666654
Q ss_pred C-----ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHH----c
Q 043480 244 V-----MLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCN-SNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCK----G 313 (493)
Q Consensus 244 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 313 (493)
. +.+.|..++....+.|. |+.......+..... ..+...|.++|..+-..+. ...+-.+..+|.. .
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcC
Confidence 3 56778888888888774 444443333332222 2467889999988887653 2333333333322 2
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH-HHH---Hc----cCC
Q 043480 314 GQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTII-DCL---CK----SRE 385 (493)
Q Consensus 314 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~----~~~ 385 (493)
.+...|..++.+....|. |...--...+..+.. +.++.+...+..+...+.. ...+-...+ ... .. ..+
T Consensus 378 r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccc
Confidence 467889999998888873 232222222333333 6777777666666665532 222222111 111 11 124
Q ss_pred HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHH
Q 043480 386 IGTAYGVFLDMVEQGITPDVISYNALINGLCKS----SRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQ----EKKLE 457 (493)
Q Consensus 386 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 457 (493)
...+...+.+....| +......+...|..- .+++.|...+......+ ......+...+.. .. +.
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LH 526 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hH
Confidence 566777777777655 444555555544432 35778888888877654 3333344433332 23 68
Q ss_pred HHHHHHHHHHHcC
Q 043480 458 LACRLWDQMMEKG 470 (493)
Q Consensus 458 ~a~~~~~~~~~~~ 470 (493)
.|.+++++..+.+
T Consensus 527 ~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 527 LAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHhcC
Confidence 8888888887653
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=88.33 E-value=4.1 Score=27.98 Aligned_cols=34 Identities=18% Similarity=0.086 Sum_probs=16.1
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhC
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQS 38 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 38 (493)
.|.|...-..++..+...|++++|++.+-++.+.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3444444445555555555555555555544443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.11 E-value=12 Score=30.05 Aligned_cols=90 Identities=18% Similarity=0.181 Sum_probs=60.9
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChh-----hHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHh
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSI-----DYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (493)
..-+.++|++++|..-|.++++.- |+... .|..-..++.+.+.++.|+.-..+.++.+ +....+...-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHH
Confidence 345778999999999999998874 33222 24444567889999999999998888765 223334444455677
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHh
Q 043480 91 EVKNFTLINILLDNMDKLALEVFHKMVS 118 (493)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~a~~~~~~~~~ 118 (493)
+...+ +.|++-+..+..
T Consensus 180 k~ek~-----------eealeDyKki~E 196 (271)
T KOG4234|consen 180 KMEKY-----------EEALEDYKKILE 196 (271)
T ss_pred hhhhH-----------HHHHHHHHHHHH
Confidence 77777 445555555555
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.96 E-value=17 Score=31.58 Aligned_cols=137 Identities=12% Similarity=0.047 Sum_probs=77.7
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC-CHhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043480 334 DVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSR-EIGTAYGVFLDMVEQGITPDVISYNALI 412 (493)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 412 (493)
+...-...+.++.+.++. .+...+-.+.+ .++..+-...+.++...+ +...+...+..++. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 444445556666666653 44444444443 344444444455555442 23355555555553 34556666677
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043480 413 NGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIH 486 (493)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 486 (493)
.++.+.|+ ..++..+-+..+. ++ .....+.++...|+. +|...+..+.+. .||..+...-+.+|.
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~---~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKK---GT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcC---Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 77777777 4455555555443 22 234567777777774 577777777753 457777777666664
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.96 E-value=1.8 Score=22.77 Aligned_cols=29 Identities=17% Similarity=0.043 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 441 VTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.+|..+...|...|++++|.+.+++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677778888888888888888887753
|
... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.78 E-value=12 Score=30.16 Aligned_cols=73 Identities=15% Similarity=0.003 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043480 387 GTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR---GAHPDEVTFKLLIGGLVQEKKLELAC 460 (493)
Q Consensus 387 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~ 460 (493)
+.|...|-.+...+.--++.....|...| ...|.+++++++-+..+. +-.+|+..+..|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44444444444443332333333333322 244555555555554331 12345556666666666666655553
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.61 E-value=25 Score=33.62 Aligned_cols=148 Identities=13% Similarity=0.125 Sum_probs=80.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 043480 208 TGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMF 287 (493)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 287 (493)
.|+++.|..++..+. ....+.++..+-+.|..++|+++- +|+.. -.....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHH
Confidence 455665555433322 223344455555566655554432 22211 12233456777777655
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 043480 288 MVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLS 367 (493)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 367 (493)
..+. .+..-|..|.++....+++..|.+.|..... |..|+-.+...|+.+....+-....+.| .
T Consensus 660 a~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~ 723 (794)
T KOG0276|consen 660 AVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-K 723 (794)
T ss_pred HHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-c
Confidence 4332 2555677777777777777777777665442 3455556666677666666655555555 3
Q ss_pred CCHHhHHHHHHHHHccCCHhHHHHHHHH
Q 043480 368 PDRILYTTIIDCLCKSREIGTAYGVFLD 395 (493)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 395 (493)
.|... .+|...|+++++.+++..
T Consensus 724 ~N~AF-----~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 NNLAF-----LAYFLSGDYEECLELLIS 746 (794)
T ss_pred cchHH-----HHHHHcCCHHHHHHHHHh
Confidence 33222 234456777777766644
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.60 E-value=0.98 Score=23.59 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=12.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 043480 446 LIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 446 l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
+..++.+.|++++|.+.++++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44445555555555555555554
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.56 E-value=3.7 Score=33.24 Aligned_cols=78 Identities=12% Similarity=0.108 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCC--CCcChhhHHHHHHHH
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG--FSLTPFTYSRFISGL 89 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~ 89 (493)
.+..++.+.+.+.+.+|+...+.-.+.. |.+...-..++..++-.|+|++|..-++-.-+.. ..+...+|..++.+-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 4456788899999999999999888775 6677777888899999999999987777665432 234456777777654
Q ss_pred h
Q 043480 90 C 90 (493)
Q Consensus 90 ~ 90 (493)
.
T Consensus 83 a 83 (273)
T COG4455 83 A 83 (273)
T ss_pred H
Confidence 3
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.04 E-value=1.1 Score=23.35 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhC
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQS 38 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 38 (493)
+-.++.++.+.|++++|.+.|+++.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345667777777777777777777664
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.97 E-value=5.7 Score=34.62 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=59.8
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHH
Q 043480 51 IGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTI 130 (493)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 130 (493)
..-|.++|.|++|+..|...+... +.|+.++..-..+|.+...+..| ..-....+..+ ..-+..|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~A-----------E~DC~~AiaLd-~~Y~KAYSR 170 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQA-----------EEDCEAAIALD-KLYVKAYSR 170 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHH-----------HHhHHHHHHhh-HHHHHHHHH
Confidence 345778999999999999988763 34888888888899998888433 33333332220 111334444
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 043480 131 VIDGLCKAKEFDKAVQAWEHMIENGIKPD 159 (493)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 159 (493)
-+.+-...|...+|.+=++..++. .|+
T Consensus 171 R~~AR~~Lg~~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 171 RMQARESLGNNMEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHhh--Ccc
Confidence 444445556666676666666654 455
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.68 E-value=20 Score=34.17 Aligned_cols=134 Identities=17% Similarity=0.070 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHH
Q 043480 266 YSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAF 345 (493)
Q Consensus 266 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (493)
...+.+.+.+.+.|-.++|+++- +|+.. -.....+.|+++.|.++..+.. +..-|..|..+.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 34556677777777777776542 12211 1223456788888888776553 667799999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 043480 346 LREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAM 425 (493)
Q Consensus 346 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 425 (493)
...+++..|.+.|..... |..|+-.+...|+-+....+-....+.|. . |....+|...|+++++.
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-N-----NLAFLAYFLSGDYEECL 741 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHH
Confidence 999999999999987764 45677777778887766666666666552 2 33344677889999999
Q ss_pred HHHHHHH
Q 043480 426 HLYEEMQ 432 (493)
Q Consensus 426 ~~~~~~~ 432 (493)
+++..-.
T Consensus 742 ~lLi~t~ 748 (794)
T KOG0276|consen 742 ELLISTQ 748 (794)
T ss_pred HHHHhcC
Confidence 8887653
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.65 E-value=17 Score=29.22 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=51.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC-----HHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHh
Q 043480 344 AFLREGSSAMAEKLLNQMRGMNLSPD-----RILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD-VISYNALINGLCK 417 (493)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 417 (493)
-+...|++++|..-|......- ++. ...|..-..++.+.+.++.|..--.+.++.+ |+ ......-..+|.+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 3556777777777777776542 222 1234444455666677777777666666643 22 2222233445666
Q ss_pred cCChhHHHHHHHHHHHc
Q 043480 418 SSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 418 ~g~~~~a~~~~~~~~~~ 434 (493)
...+++|+.=++++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 67777777777777664
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.52 E-value=9.6 Score=27.80 Aligned_cols=46 Identities=9% Similarity=0.153 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 388 TAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 388 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
+..+-++.+....+.|++.....-+++|.+.+|+..|.++|+-+..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4445555555666667777777777777777777777777776654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.11 E-value=42 Score=33.28 Aligned_cols=189 Identities=14% Similarity=0.106 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhh-CCCCCC--hhhHHHHHHHHH-hcCChhHHHHHHHHhccCCCCcChh-----hHHHHHHHHhccCChh
Q 043480 26 DQAVHVFDEMTQ-SNCRVF--SIDYNRFIGVLI-RHSRFDLVQFYYQQMHPLGFSLTPF-----TYSRFISGLCEVKNFT 96 (493)
Q Consensus 26 ~~A~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~ 96 (493)
..|++.++.+.+ ..++|. ..++..++..+. ...+++.|...+++.+...-.++.. +...+++.+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 346777777763 333332 334555666665 6789999999999886543233221 2233445555555442
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHH-HHHHhccCCHHHHHHHHHHHHHCC---CCCCHHhHHHHHHHHh-
Q 043480 97 LINILLDNMDKLALEVFHKMVSKGREPDVVTYTIV-IDGLCKAKEFDKAVQAWEHMIENG---IKPDNKACAALVVGLC- 171 (493)
Q Consensus 97 ~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~- 171 (493)
|...+++. ++.++. .+..+-...|..+ +..+...+++..|++.++.+.... ..|-..++..++.+..
T Consensus 118 -a~~~l~~~----I~~~~~---~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~ 189 (608)
T PF10345_consen 118 -ALKNLDKA----IEDSET---YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLH 189 (608)
T ss_pred -HHHHHHHH----HHHHhc---cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence 44333221 111211 2222233344444 333334489999999998887532 2333444555554443
Q ss_pred -ccCchhHHHHHHHHHHhCC---------CCCChhhHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 043480 172 -GDGKVDLAYELTVGAMKGK---------VEFGVLIYNALISGFC--RTGRIRRAMAIKSFMK 222 (493)
Q Consensus 172 -~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 222 (493)
..+..+++.+..+.+.... ..|...+|..+++.++ ..|+++.+...++++.
T Consensus 190 l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 190 LRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455666766666653311 1334556666666544 5677767766655553
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=85.03 E-value=46 Score=33.62 Aligned_cols=195 Identities=16% Similarity=0.094 Sum_probs=106.4
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChh-------hHHHHHH-HHHHcCCHHHHHHHHHHHHHc----CCCcCHhHHHHHH
Q 043480 275 LCNSNQLDKAYMFMVKKMEAKGLRDKV-------SYNTVIE-AFCKGGQTRRAYKLFEGMRRR----GIELDVVTFTILI 342 (493)
Q Consensus 275 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 342 (493)
.....++++|..++.+....-+.++.. .++.+-. .....|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888877776654443222 2333322 233468888888888877654 2234556677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH---HhHHHHHH--HHHccCCH--hHHHHHHHHHHhCC--CCC----CHhhHH
Q 043480 343 KAFLREGSSAMAEKLLNQMRGMNLSPDR---ILYTTIID--CLCKSREI--GTAYGVFLDMVEQG--ITP----DVISYN 409 (493)
Q Consensus 343 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~--~~~~~~~~--~~a~~~~~~~~~~~--~~p----~~~~~~ 409 (493)
.+..-.|++++|..+.+...+..-.-+. ..|..+.. .+...|.. .+.+..+....... -.| -..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7888899999999888776653112222 23333322 23455632 23333333333210 011 123444
Q ss_pred HHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 410 ALINGLCKS-SRVSEAMHLYEEMQIRGAHPDEVTF--KLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 410 ~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.+..++.+. +...++..-++-.......|-...+ ..|+......|+.+.|...+.++...
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 455555442 2223333333333333233322222 36778888899999999998888776
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=84.81 E-value=25 Score=30.32 Aligned_cols=115 Identities=16% Similarity=0.267 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHH-cCCCcCHhHHHHHHHHHHH-cC-CHHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHHccCCHhHHHH
Q 043480 316 TRRAYKLFEGMRR-RGIELDVVTFTILIKAFLR-EG-SSAMAEKLLNQMRG-MNLSPDRILYTTIIDCLCKSREIGTAYG 391 (493)
Q Consensus 316 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 391 (493)
.-+|+++|+.... ..+-.|......+++.... .+ ....-.++.+-+.. .+-.++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3445555542211 1233355555555555444 11 22222233333332 2235666666677777777777777777
Q ss_pred HHHHHHhC-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 043480 392 VFLDMVEQ-GITPDVISYNALINGLCKSSRVSEAMHLYEE 430 (493)
Q Consensus 392 ~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (493)
++...... +..-|...|..+++.-...||..-...+.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 77666544 4445666677777777777776665555554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=84.74 E-value=26 Score=30.51 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=12.2
Q ss_pred CHhhHHHHHHHHhccCCH----HHHHHHHHHH
Q 043480 124 DVVTYTIVIDGLCKAKEF----DKAVQAWEHM 151 (493)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~----~~a~~~~~~~ 151 (493)
|...-...+.+++..|+. +++...+..+
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 333334444444444442 3444445444
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.67 E-value=0.37 Score=36.82 Aligned_cols=129 Identities=15% Similarity=0.068 Sum_probs=75.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043480 341 LIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR 420 (493)
Q Consensus 341 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (493)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++.. +..-...++..|.+.|-
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555666777777777777776554566777777888887777667766666511 11223455666777777
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhchhc
Q 043480 421 VSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDAA 491 (493)
Q Consensus 421 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 491 (493)
++++.-++.++-...- .+..+...++++.|.++..+ .++..+|..+++.|...++.
T Consensus 86 ~~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCcc
Confidence 7777776666432110 11123444555555533322 24578888888888776653
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.51 E-value=51 Score=33.74 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=21.0
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh
Q 043480 135 LCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLC 171 (493)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (493)
|......+-+...++.+....-.++....+.++..|+
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 4445566666666666665444445555555555554
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=83.08 E-value=2.7 Score=21.15 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhC
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQS 38 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 38 (493)
+|..+...+...|+++.|...|++..+.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4555666666667777777766666543
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=82.65 E-value=21 Score=30.46 Aligned_cols=86 Identities=8% Similarity=-0.003 Sum_probs=46.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH--
Q 043480 201 LISGFCRTGRIRRAMAIKSFMKWN--GCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLC-- 276 (493)
Q Consensus 201 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 276 (493)
-|.+++..++|.+++...-+--+. .++|. ....-|-.|.+.+.+..+.++-.......-..+...|..++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 467777777777776654333221 22333 333334446677777777776666665432233334555555443
Q ss_pred ---ccCCHHHHHHHH
Q 043480 277 ---NSNQLDKAYMFM 288 (493)
Q Consensus 277 ---~~~~~~~a~~~~ 288 (493)
-.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 356666665544
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.61 E-value=19 Score=29.89 Aligned_cols=118 Identities=13% Similarity=0.046 Sum_probs=70.8
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHhcCChh
Q 043480 345 FLREGSSAMAEKLLNQMRGMNLSPDR-ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVIS-YNALINGLCKSSRVS 422 (493)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~ 422 (493)
|.....++.|...+.+.+.. .|+. .-|+.=+.++.+..+++.+..--.+.++. .||..- .-.+..++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 44455677777776666654 3554 44556666677777777777666666653 455432 333445556677788
Q ss_pred HHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 423 EAMHLYEEMQI----RGAHPDEVTFKLLIGGLVQEKKLELACRLWDQM 466 (493)
Q Consensus 423 ~a~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 466 (493)
+|+..+.+..+ ..+.|-......|..+=...=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 88888877632 334444555666665555555556666666655
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.50 E-value=0.97 Score=34.50 Aligned_cols=84 Identities=10% Similarity=0.051 Sum_probs=53.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 043480 131 VIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGR 210 (493)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 210 (493)
++..+.+.+.+....++++.+...+...+....+.++..|++.++.+...++++... ..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence 566677778888888888888866555567777888888888877777776655211 1222345666666666
Q ss_pred HHHHHHHHHHH
Q 043480 211 IRRAMAIKSFM 221 (493)
Q Consensus 211 ~~~a~~~~~~~ 221 (493)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666665554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.05 E-value=12 Score=27.36 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 424 AMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 424 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
..+-+..+...++.|++.+...-+++|.+.+|+..|.++++-++.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344444555555666666666666666666666666666655543
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.04 E-value=32 Score=29.60 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=56.9
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH-----HcCCCCCHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQ-----IRGAHPDEVTF 443 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~ 443 (493)
+++.....|..+|.+.+|.++.++.+... +.+...+-.|+..+...||--.+.+.++++. +.|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 45667778899999999999999999863 5677888899999999999888988888873 34666654443
|
|
| >PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.98 E-value=7.2 Score=22.90 Aligned_cols=34 Identities=12% Similarity=0.268 Sum_probs=22.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043480 450 LVQEKKLELACRLWDQMMEKGFTLDKTVSAALIE 483 (493)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 483 (493)
..+.|-.+++..++++|.+.|+..+...+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666677777777777777777776666654
|
This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=81.74 E-value=5.2 Score=26.37 Aligned_cols=46 Identities=9% Similarity=0.064 Sum_probs=27.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 043480 417 KSSRVSEAMHLYEEMQIRGAHPD--EVTFKLLIGGLVQEKKLELACRL 462 (493)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 462 (493)
...+.+.|+..|+...+.-..|. -.++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777766655433321 34455566667777776665554
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=81.56 E-value=59 Score=32.27 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=40.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHc---
Q 043480 202 ISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCG-IEPDVYSYNQLLKGLCN--- 277 (493)
Q Consensus 202 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 277 (493)
...+.-.|++|.|.+.+-.. .+...+.+++...+..|.-.+-.+... ..+.... -.|.+.-+..++..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 45566789999999987762 222556666665555443222211111 2222111 01222556777777765
Q ss_pred cCCHHHHHHHHHHHHHc
Q 043480 278 SNQLDKAYMFMVKKMEA 294 (493)
Q Consensus 278 ~~~~~~a~~~~~~~~~~ 294 (493)
..+...|.+++--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 45777887777655543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.49 E-value=1.1e+02 Score=35.22 Aligned_cols=317 Identities=11% Similarity=0.035 Sum_probs=154.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNC--RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
.+..+-.+++.+.+|+-.+++-..... ......+-.+...|...++++...-+...-.. .|+ .+.. +.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~~q-il~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LYQQ-ILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HHHH-HHHHHh
Confidence 566778888889999888887311100 11122233344478888888887777764111 232 2332 334556
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHH-HHHHH
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAA-LVVGL 170 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 170 (493)
.|++ +.|...|+.+.+. .++...+++-++......|.++.++-..+-.... ..+....++. =+.+-
T Consensus 1462 ~g~~-----------~da~~Cye~~~q~-~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaa 1528 (2382)
T KOG0890|consen 1462 SGNW-----------ADAAACYERLIQK-DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAA 1528 (2382)
T ss_pred hccH-----------HHHHHHHHHhhcC-CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHH
Confidence 6777 6777888888875 2334667777777777777787777755555443 1222233332 23344
Q ss_pred hccCchhHHHHHHHHHHhCCCCCChhhHHH--HHHHHHhc--CCHHHHHHHHHHHHHCC--------CCC-CHHHHHHHH
Q 043480 171 CGDGKVDLAYELTVGAMKGKVEFGVLIYNA--LISGFCRT--GRIRRAMAIKSFMKWNG--------CEP-DLVTYNAIL 237 (493)
Q Consensus 171 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~--~~~~~a~~~~~~~~~~~--------~~~-~~~~~~~ll 237 (493)
.+.++++....... .. +...|.. +.....+. .+.-.-.+..+.+.+.- ..- -...|..++
T Consensus 1529 W~l~qwD~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~ 1601 (2382)
T KOG0890|consen 1529 WRLSQWDLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILM 1601 (2382)
T ss_pred hhhcchhhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHH
Confidence 66777777666544 11 2222222 22222222 11111112222222111 010 012233333
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCC------hhhHHHHHHHHHccCCHHHHHHHHHHHHHcC------CCCChhhHHH
Q 043480 238 NYYCDEVMLDEAEKLVMEMESCGIEPD------VYSYNQLLKGLCNSNQLDKAYMFMVKKMEAK------GLRDKVSYNT 305 (493)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ 305 (493)
....-. +.....+... +..++ ..-|..-+..-....+..+-+-.+++..-.. ...-...|-.
T Consensus 1602 kLH~l~----el~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLq 1675 (2382)
T KOG0890|consen 1602 KLHLLL----ELENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQ 1675 (2382)
T ss_pred HHHHHH----HHHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHH
Confidence 222111 1111111111 11121 1222222221111111222222222221111 1112345667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 043480 306 VIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN 365 (493)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 365 (493)
..+.....|+++.|...+-...+.+ -+..+-..+...-..|+...|..+++...+..
T Consensus 1676 sAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1676 SARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 7777777899998887776666654 22445556666777899999999988887543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=81.31 E-value=65 Score=32.64 Aligned_cols=222 Identities=14% Similarity=0.067 Sum_probs=115.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHH-HHHccCChHHHHHHHHHHHHC----CCCCChhhHHHHHH
Q 043480 206 CRTGRIRRAMAIKSFMKWNGCEPDLV-------TYNAILN-YYCDEVMLDEAEKLVMEMESC----GIEPDVYSYNQLLK 273 (493)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 273 (493)
....++.+|..+..++...-..|+.. .++.+-. .....|+++++.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 35678889988888876542222221 2333221 223578889999888887643 12234455666677
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHH-----HHHHHcCCHH--HHHHHHHHHHHcC---CC---cCHhHHHH
Q 043480 274 GLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVI-----EAFCKGGQTR--RAYKLFEGMRRRG---IE---LDVVTFTI 340 (493)
Q Consensus 274 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~--~a~~~~~~~~~~~---~~---~~~~~~~~ 340 (493)
+..-.|++++|..+.....+....-+...+.... ..+...|+.. +.+..+....... .+ +-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7778899999988887776643333443332222 2234456322 2233333332221 11 12233444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC--CCCCH--H--hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC----CHhhHHH
Q 043480 341 LIKAFLREGSSAMAEKLLNQMRGMN--LSPDR--I--LYTTIIDCLCKSREIGTAYGVFLDMVEQGITP----DVISYNA 410 (493)
Q Consensus 341 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~--~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~ 410 (493)
+..++.+ .+.+..-...-.+.+ ..|.. . .+..++......|+++.|...+.++......+ +..+-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555544 333222222111111 12222 2 22366777788999999999988887543222 2222222
Q ss_pred HHH--HHHhcCChhHHHHHHHH
Q 043480 411 LIN--GLCKSSRVSEAMHLYEE 430 (493)
Q Consensus 411 l~~--~~~~~g~~~~a~~~~~~ 430 (493)
.+. .....|+.+.+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 222 23356787777776665
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.08 E-value=31 Score=29.72 Aligned_cols=78 Identities=15% Similarity=0.028 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHh
Q 043480 409 NALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQEKKLELACRLWDQMMEK-GFTLDKTVSAALIEAIH 486 (493)
Q Consensus 409 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~ 486 (493)
+.+-.+|.+.++++.|+++.+.+... .| ++.-+.--.-.|.+.|.+..|..=++..++. .-.|+.......+..+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 44555667777777777777777764 34 4555666666777777777777777777655 44566666666666655
Q ss_pred hc
Q 043480 487 LQ 488 (493)
Q Consensus 487 ~~ 488 (493)
..
T Consensus 263 ~~ 264 (269)
T PRK10941 263 QK 264 (269)
T ss_pred hc
Confidence 43
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=80.67 E-value=49 Score=30.77 Aligned_cols=126 Identities=14% Similarity=0.110 Sum_probs=75.8
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCCh
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNF 95 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 95 (493)
|.--...|++-.|-+-+..++.. .+.++..-..........|+|+.+.+.+...-.. +.....+...+++.....+++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 44556667777775544444433 2445554444555677789999998888766432 344556777888888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 043480 96 TLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG 155 (493)
Q Consensus 96 ~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (493)
+.|...-.-|....++ +...........-..|-++++.-.|+++...+
T Consensus 374 -----------~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 374 -----------REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred -----------HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 4455555555544332 22332222333344567888888888876543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.30 E-value=66 Score=32.05 Aligned_cols=103 Identities=11% Similarity=0.149 Sum_probs=59.5
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccC
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRV--FSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVK 93 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 93 (493)
+.-+.+.+.+++|+++.+.....- +. ....+..++..+...|++++|-...-.|.. .+...|..-+..+...+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~-~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNE-ERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCc-cccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcccc
Confidence 455677788888888776554421 11 234566777777778888888777777753 34445555555555555
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 043480 94 NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCK 137 (493)
Q Consensus 94 ~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 137 (493)
+.. .++.-+.......+...|..++..+..
T Consensus 438 ~l~--------------~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLT--------------DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccc--------------hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 442 222222221122355677777776665
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 92.6 bits (228), Expect = 6e-20
Identities = 29/230 (12%), Positives = 72/230 (31%), Gaps = 4/230 (1%)
Query: 247 DEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTV 306
A L P +LL+ LD + +A+ +
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 307 IEAFCKGGQTRRAYKLFEGMRRR---GIELDVVTFTILIKAFLREGSSAMAEKLLNQMRG 363
+ Q A+ L + L + + ++ + R+G+ +L ++
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 364 MNLSPDRILYTTIIDCLCKS-REIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVS 422
L+PD + Y + C+ + ++ GT M ++G+ + L++ +++ +
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 423 EAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFT 472
+ + P V L+ + + +L +
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCL 303
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 84.9 bits (208), Expect = 2e-17
Identities = 34/268 (12%), Positives = 91/268 (33%), Gaps = 6/268 (2%)
Query: 110 LEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVG 169
L+ +M + E +T + ++ +K+ ++ + P + A L+
Sbjct: 44 LKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTR--QAPESPWEEQLARLLQE 101
Query: 170 LCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKW---NGC 226
G +D+ + + ++ A T ++ A +
Sbjct: 102 APGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK 161
Query: 227 EPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYM 286
L YNA++ + + E ++ ++ G+ PD+ SY L+ + +Q
Sbjct: 162 LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221
Query: 287 FMVKKMEAKGL-RDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAF 345
+++M +GL + ++ + + +K+ V + L++
Sbjct: 222 RCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281
Query: 346 LREGSSAMAEKLLNQMRGMNLSPDRILY 373
+ KL ++ + ++ L+
Sbjct: 282 YAKDGRVSYPKLHLPLKTLQCLFEKQLH 309
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.8 bits (156), Expect = 3e-11
Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 3/182 (1%)
Query: 311 CKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDR 370
K Q R +L ++ + T ++ R S MA L + R SP
Sbjct: 33 DKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWE 92
Query: 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHL--- 427
++ + + ++ A + ++ A HL
Sbjct: 93 EQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVV 152
Query: 428 YEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHL 487
+ + + + ++ G ++ + + + + G T D AA ++ +
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212
Query: 488 QD 489
QD
Sbjct: 213 QD 214
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.0 bits (133), Expect = 2e-08
Identities = 23/199 (11%), Positives = 54/199 (27%), Gaps = 15/199 (7%)
Query: 35 MTQSNCRVFSIDYNRFIGVLIRHSRFDLVQ---FYYQQMHPLGFSLTPFTYSRFISGLCE 91
+Q+ F + + L + LT Y+ + G
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQA-WEH 150
F K + V + G PD+++Y + + + + ++ E
Sbjct: 178 QGAF-----------KELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 151 MIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGR 210
M + G+K A L+ + +++ + + L+
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286
Query: 211 IRRAMAIKSFMKWNGCEPD 229
+ +K C +
Sbjct: 287 RVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.2 bits (118), Expect = 1e-06
Identities = 30/276 (10%), Positives = 68/276 (24%), Gaps = 21/276 (7%)
Query: 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSID---YNRFIGVLIRHSR 59
+L Q+ A + + A H+ + + YN + R
Sbjct: 121 AQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA 180
Query: 60 FDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSK 119
F + + + G + +Y+ + + D +M +
Sbjct: 181 FKELVYVLFMVKDAGLTPDLLSYAAALQCMGR----------QDQDAGTIERCLEQMSQE 230
Query: 120 GREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLA 179
G + + +++ +A + P + L+ +
Sbjct: 231 GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSY 290
Query: 180 YELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNY 239
+L + + F ++ L S C + + K L
Sbjct: 291 PKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLR-------- 342
Query: 240 YCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGL 275
E L A + + +S L L
Sbjct: 343 DQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLL 378
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.3 bits (171), Expect = 8e-13
Identities = 76/516 (14%), Positives = 151/516 (29%), Gaps = 137/516 (26%)
Query: 1 MIQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS-IDYNRFIGVLIRHSR 59
M + G + Y+ +S A + + +M +S + S + + I S
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS---ILSKEEIDHIIMSKDAVSG 63
Query: 60 ----FDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHK 115
F + ++ +F+ + N+ + M + E
Sbjct: 64 TLRLFWTLLSKQEE-----------MVQKFVEEVLR-INYKFL------MSPIKTE---- 101
Query: 116 MVSKGREPDVVTYTIVIDGLCKAKE-FDK-AVQAWEHM--IENGIKPDNKACAALVVGLC 171
+ Y D L + F K V + + + A L+ G+
Sbjct: 102 --QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 172 GDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLV 231
G GK +A ++ C + +++ M K F W +
Sbjct: 160 GSGKTWVALDV-----------------------CLSYKVQCKMDFKIF--W-------L 187
Query: 232 TYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQL-DKAYMFMVK 290
N E +L+ +KL+ +++ +S N L + + + +
Sbjct: 188 NLK---NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL----RIHSIQAELRRLLKS 240
Query: 291 KMEAKGLR--DKVSYNTVIEAF---CKGGQTRRAYKLFE---GMRRRGIELD--VVTFT- 339
K L V AF CK T R ++ + I LD +T T
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 340 -----ILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK---SREIGTAYG 391
+L+K + L ++ N P +II + + +
Sbjct: 301 DEVKSLLLKYL-----DCRPQDLPREVLTTN--P---RRLSIIAESIRDGLATWDNWKH- 349
Query: 392 VFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEV--TFKLLIGG 449
V D + I S N L +E +++ + + P LL
Sbjct: 350 VNCDKLTTIIE---SSLNVL--------EPAEYRKMFDRLSV---FPPSAHIPTILL--- 392
Query: 450 LVQEKKLELACRLWDQMMEK--GFTLDKTVSAALIE 483
+W +++ ++K +L+E
Sbjct: 393 ----------SLIWFDVIKSDVMVVVNKLHKYSLVE 418
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 493 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.89 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.77 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.75 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.73 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.71 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.71 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.71 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.7 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.69 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.69 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.69 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.69 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.67 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.67 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.66 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.64 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.63 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.62 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.6 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.6 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.58 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.58 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.58 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.57 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.56 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.55 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.54 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.53 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.51 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.51 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.49 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.45 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.44 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.43 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.42 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.41 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.4 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.38 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.37 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.34 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.34 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.33 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.25 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.25 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.23 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.22 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.2 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.19 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.19 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.19 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.18 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.18 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.17 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.15 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.15 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.14 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.12 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.11 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.08 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.06 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.06 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.05 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.04 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.04 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.03 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.02 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.01 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.01 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.01 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.99 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.99 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.95 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.92 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.91 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.9 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.9 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.87 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.86 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.86 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.85 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.83 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.83 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.81 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.81 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.8 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.8 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.79 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.78 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.78 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.78 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.76 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.76 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.75 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.74 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.74 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.73 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.73 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.72 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.71 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.71 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.71 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.7 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.67 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.66 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.66 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.66 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.65 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.64 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.64 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.63 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.62 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.61 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.61 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.59 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.59 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.58 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.58 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.58 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.56 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.56 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.55 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.55 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.53 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.5 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.49 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.45 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.44 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.43 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.39 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.37 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.37 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.34 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.33 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.32 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.32 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.3 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.29 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.27 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.24 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.24 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.22 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.22 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.21 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.19 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.19 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.18 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.17 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.13 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.11 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.09 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.08 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.07 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.05 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.04 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.96 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.92 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.86 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.86 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.85 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.83 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.79 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.78 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.76 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.74 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.55 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.46 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.45 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.36 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.36 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.35 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.28 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.24 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.2 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.17 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.09 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.0 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.91 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.81 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.77 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.76 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.68 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.58 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.49 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.46 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.45 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.41 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.33 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.15 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.1 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.03 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.47 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.97 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 94.29 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.1 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.98 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.33 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.84 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.98 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.78 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.59 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.53 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.37 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.21 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.06 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.73 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 90.13 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 89.67 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.62 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 87.55 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.49 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 86.77 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 85.88 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 85.23 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 84.99 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.94 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 84.8 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.62 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 82.23 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 80.26 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-42 Score=331.78 Aligned_cols=454 Identities=11% Similarity=0.028 Sum_probs=393.2
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
++...|+.++..|.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+|+++... ++++.+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 67788999999999999999999999999864 467789999999999999999999999998754 68899999999
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC---------------CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSK---------------GREPDVVTYTIVIDGLCKAKEFDKAVQAWEHM 151 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 151 (493)
.+|.+.|++ ++|+++|+++... |.+++..+|+.++.+|.+.|++++|++.|++|
T Consensus 158 ~~~~~~g~~-----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 158 FCLVKLYDW-----------QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp HHHHHTTCH-----------HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhH-----------HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999 5555666532111 23446889999999999999999999999999
Q ss_pred HHCCCCCCHHhHHHH--------------------------------------HHHHhccCchhHHHHHHHHHHhCCCCC
Q 043480 152 IENGIKPDNKACAAL--------------------------------------VVGLCGDGKVDLAYELTVGAMKGKVEF 193 (493)
Q Consensus 152 ~~~~~~~~~~~~~~l--------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 193 (493)
.+.+.. +...+..+ +..|.+.|++++|.++|+++.+. ++
T Consensus 227 ~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~ 303 (597)
T 2xpi_A 227 LMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EK 303 (597)
T ss_dssp HHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GG
T ss_pred HHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--Cc
Confidence 986421 33333322 44566789999999999998865 57
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 043480 194 GVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLK 273 (493)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 273 (493)
+..+++.++..|.+.|++++|.++|+++...+ +.+..++..++..+...|++++|..+++.+.+.. +.+..++..++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 89999999999999999999999999999775 5578889999999999999999999999998653 567889999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHH
Q 043480 274 GLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAM 353 (493)
Q Consensus 274 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 353 (493)
+|.+.|++++|...|.++....+. +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999886543 78899999999999999999999999999874 3478899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhC----CCCCC--HhhHHHHHHHHHhcCChhHHHHH
Q 043480 354 AEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQ----GITPD--VISYNALINGLCKSSRVSEAMHL 427 (493)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 427 (493)
|.++|+.+.+.. +.+..+|+.++..|.+.|++++|..+|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.
T Consensus 460 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 460 ANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999998865 568899999999999999999999999999875 66777 78999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 428 YEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAI 485 (493)
Q Consensus 428 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 485 (493)
++++.+.+ +.+..+|..++.+|.+.|++++|.+.++++++.. +.+...+..+...|
T Consensus 539 ~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 539 LNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 99998864 2389999999999999999999999999999862 33455665555444
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=318.78 Aligned_cols=446 Identities=12% Similarity=0.017 Sum_probs=374.2
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhH
Q 043480 19 LVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLI 98 (493)
Q Consensus 19 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 98 (493)
+.+.|.+..+...+..+. .++...|+.++..+.+.|++++|+.+|+++... .|+..++..++.+|...|++
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~--- 133 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDY--- 133 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCH---
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcH---
Confidence 445566666766666542 356888999999999999999999999999854 67888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC---------------CCCCCHHhH
Q 043480 99 NILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN---------------GIKPDNKAC 163 (493)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~ 163 (493)
+.|+.+|+.+.. .+++..+++.++.+|.+.|++++|+++|+++... +.+++..++
T Consensus 134 --------~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (597)
T 2xpi_A 134 --------ARAKCLLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMC 203 (597)
T ss_dssp --------HHHHHHHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHH
T ss_pred --------HHHHHHHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHH
Confidence 666777777754 4678999999999999999999999999953321 223467899
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHH--------------------------------------HHHHH
Q 043480 164 AALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNA--------------------------------------LISGF 205 (493)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------------------------l~~~~ 205 (493)
..++.+|.+.|++++|.+.|+++.+.+ +.+...+.. ++..|
T Consensus 204 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 282 (597)
T 2xpi_A 204 YLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKT 282 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764 223333332 24556
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHH
Q 043480 206 CRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAY 285 (493)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 285 (493)
.+.|++++|.++|+++... +++..+++.++..|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|.
T Consensus 283 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
T 2xpi_A 283 SHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLY 359 (597)
T ss_dssp TTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHH
T ss_pred cCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHH
Confidence 6788999999999999865 6899999999999999999999999999998765 457889999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 043480 286 MFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN 365 (493)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 365 (493)
.++.++....+ .+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+.+.+.+
T Consensus 360 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 360 LISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999987654 478899999999999999999999999998863 3368899999999999999999999999999876
Q ss_pred CCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--
Q 043480 366 LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR----GAHPD-- 439 (493)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-- 439 (493)
+.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+
T Consensus 438 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 438 -QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp -TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred -ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 5688999999999999999999999999999863 457899999999999999999999999999775 66787
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhchhcc
Q 043480 440 EVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDAAN 492 (493)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 492 (493)
..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..+..+|...|+++
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPG 567 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHH
Confidence 8899999999999999999999999999874 557899999999999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-30 Score=234.62 Aligned_cols=383 Identities=14% Similarity=0.063 Sum_probs=236.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCC
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKN 94 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 94 (493)
++..+.+.|++++|++.++++.+.+ |.+...+..+...+...|++++|...++..++.. +.+..+|..+..++...|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4566777788888888887777765 5556666666777777777777777777776653 4456666777777777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccC
Q 043480 95 FTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDG 174 (493)
Q Consensus 95 ~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (493)
+ ++|++.|+++... .+.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|
T Consensus 83 ~-----------~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 149 (388)
T 1w3b_A 83 L-----------QEAIEHYRHALRL-KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALG 149 (388)
T ss_dssp H-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTS
T ss_pred H-----------HHHHHHHHHHHHc-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcc
Confidence 6 4445555555543 23344556666666666677777766666666542 112233444444444555
Q ss_pred chhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 043480 175 KVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVM 254 (493)
Q Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 254 (493)
++++|.+.|+++.... +.+..+|..+...+...|++++|...|+
T Consensus 150 ~~~~A~~~~~~al~~~------------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 193 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQ------------------------------------PNFAVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp CHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC------------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555444432 2234444445555555555555555555
Q ss_pred HHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC
Q 043480 255 EMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELD 334 (493)
Q Consensus 255 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 334 (493)
++.+.+ +.+...+..+...+...|++++|...+.+.....+. +..++..+...+...|++++|.+.|+++.+.++ .+
T Consensus 194 ~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~ 270 (388)
T 1w3b_A 194 KAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HF 270 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SC
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CC
Confidence 554432 223444555555555566666666666555554332 455566666666666666666666666666532 24
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 043480 335 VVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALING 414 (493)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 414 (493)
..++..+...+.+.|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+. .+.+..++..+..+
T Consensus 271 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~ 348 (388)
T 1w3b_A 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASV 348 (388)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHH
Confidence 5566677777777777777777777776654 556677777777777777777777777777764 23456677777777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 043480 415 LCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQEKK 455 (493)
Q Consensus 415 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 455 (493)
+.+.|++++|...++++.+. .| +...|..+...+...|+
T Consensus 349 ~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 349 LQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 77777777777777777764 34 56777777777666553
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-30 Score=232.72 Aligned_cols=354 Identities=12% Similarity=0.012 Sum_probs=275.3
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 043480 125 VVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISG 204 (493)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (493)
...+..+...+...|++++|...++...+.. +.+..++..+...+...|++++|...|+++.... +.+...|..+..+
T Consensus 33 ~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 110 (388)
T 1w3b_A 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAA 110 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence 3344444445555555555555555554432 2344555555555555555555555555555432 3344556667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHH
Q 043480 205 FCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKA 284 (493)
Q Consensus 205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 284 (493)
+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 188 (388)
T 1w3b_A 111 LVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp HHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777776653 3345566777788888899999999999988753 44678899999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 043480 285 YMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM 364 (493)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 364 (493)
...|+++....+. +...+..+...+...|++++|...+++.....+ .+..++..+...+...|++++|...|+.+.+.
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 189 IHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999987654 677899999999999999999999999988743 36788999999999999999999999999987
Q ss_pred CCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 043480 365 NLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFK 444 (493)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 444 (493)
. +.+..+|..+...+.+.|++++|...++++++. .+.+..++..+...+...|++++|...++++.+.. +.+..++.
T Consensus 267 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 343 (388)
T 1w3b_A 267 Q-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHS 343 (388)
T ss_dssp C-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 5 567889999999999999999999999999986 35678899999999999999999999999998753 23688999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhch
Q 043480 445 LLIGGLVQEKKLELACRLWDQMMEKGFTL-DKTVSAALIEAIHLQD 489 (493)
Q Consensus 445 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ 489 (493)
.++.++.+.|++++|...++++.+. .| +...+..+-..+...|
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 344 NLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 9999999999999999999999974 44 4677777776665544
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=246.70 Aligned_cols=187 Identities=16% Similarity=0.253 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCC---------HHHHHHHHHHHHhCCCCCCHHh
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGS---------SAMAEKLLNQMRGMNLSPDRIL 372 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 372 (493)
.++.+|.+|++.|++++|+++|++|.+.|++||..||+.+|.+|++.+. .+.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3555566666666666666666666666666666666666666654432 4556666666666666666666
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043480 373 YTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQ 452 (493)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 452 (493)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 043480 453 EKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQ 488 (493)
Q Consensus 453 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 488 (493)
.|++++|.+++++|.+.|..|+..|++.++..++..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 666666666666666666666666666666665543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=240.73 Aligned_cols=215 Identities=17% Similarity=0.210 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 043480 213 RAMAIKSFMKWNGCEPDL-VTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKK 291 (493)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 291 (493)
.+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|.+.+....+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 344555666666555443 346777778888888888888888887777778888888887777765543211
Q ss_pred HHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 043480 292 MEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRI 371 (493)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 371 (493)
...+..++|.++|++|...|+.||..||+.++.+|++.|++++|.++|++|.+.|+.||..
T Consensus 81 -------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ 141 (501)
T 4g26_A 81 -------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR 141 (501)
T ss_dssp -------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred -------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Confidence 1123356777888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 451 (493)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|+.++|.+++++|.+.|..|+..||+.++..+.
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888877776
Q ss_pred hc
Q 043480 452 QE 453 (493)
Q Consensus 452 ~~ 453 (493)
..
T Consensus 222 s~ 223 (501)
T 4g26_A 222 SE 223 (501)
T ss_dssp SH
T ss_pred cC
Confidence 53
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-26 Score=219.00 Aligned_cols=441 Identities=11% Similarity=-0.008 Sum_probs=284.4
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
....+..++..+.+.|++++|+..|+++.+.+ |++..|..++.++...|++++|+..++++++.+ +.+..++..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 45678889999999999999999999999976 588999999999999999999999999998875 566788999999
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALV 167 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 167 (493)
++...|++ +.|+..|+++...+ +++......++..+........+.+.+..+...+..|+......-.
T Consensus 82 ~~~~~g~~-----------~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 149 (514)
T 2gw1_A 82 ANEGLGKF-----------ADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK 149 (514)
T ss_dssp HHHHTTCH-----------HHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------
T ss_pred HHHHHhhH-----------HHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh
Confidence 99999999 67778888888764 3455555555554444433333333333222221111111111000
Q ss_pred HHHhccCchhHHHHHHHHHHhCCC---------CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC----
Q 043480 168 VGLCGDGKVDLAYELTVGAMKGKV---------EFGVLIYNALISGFCR---TGRIRRAMAIKSFMKW-----NGC---- 226 (493)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~---- 226 (493)
..............+...+..... +.+...+......+.. .|++++|...++++.. ..-
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 229 (514)
T 2gw1_A 150 ERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNED 229 (514)
T ss_dssp -------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTC
T ss_pred HHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccc
Confidence 000011111111111111111000 1123333334444443 6777777777777766 210
Q ss_pred ----CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhh
Q 043480 227 ----EPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVS 302 (493)
Q Consensus 227 ----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 302 (493)
+.+...+..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...+.++....+. +...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 306 (514)
T 2gw1_A 230 EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSV 306 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHH
T ss_pred cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHH
Confidence 1224456666677777777777777777777654 33666777777777777777777777777765443 5566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 043480 303 YNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK 382 (493)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (493)
+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 307 YYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHH
Confidence 777777777778888888887777765332 55667777777777788888888777777643 4455677777777777
Q ss_pred cCCHhHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043480 383 SREIGTAYGVFLDMVEQGIT-PD----VISYNALINGLCK---SSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEK 454 (493)
Q Consensus 383 ~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 454 (493)
.|++++|...++++.+.... ++ ...+..+..++.. .|++++|...++++.+... .+..++..+..++.+.|
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhc
Confidence 78888888877777653111 11 2267777777777 7888888888877766532 25677777777888888
Q ss_pred CHHHHHHHHHHHHHc
Q 043480 455 KLELACRLWDQMMEK 469 (493)
Q Consensus 455 ~~~~a~~~~~~~~~~ 469 (493)
++++|...++++.+.
T Consensus 464 ~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 464 DIDEAITLFEESADL 478 (514)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888888877765
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-25 Score=211.15 Aligned_cols=431 Identities=12% Similarity=0.057 Sum_probs=262.4
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
....+..++..+.+.|++++|++.|+++.+.+ |.++..|..++.++...|++++|++.|+++++.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 45678889999999999999999999999986 7788999999999999999999999999998875 567788999999
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC------CCCCCHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN------GIKPDNK 161 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~ 161 (493)
++...|++ +.|+..|+.+ .. .|+ .....+..+...+....|...++.+... ...|+..
T Consensus 102 ~~~~~g~~-----------~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 165 (537)
T 3fp2_A 102 ANESLGNF-----------TDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT 165 (537)
T ss_dssp HHHHHTCH-----------HHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH
T ss_pred HHHHcCCH-----------HHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh
Confidence 99999999 5566666522 21 222 1222234445556667888888887653 1223332
Q ss_pred hHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChh-hHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCH--
Q 043480 162 ACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVL-IYNALISGFCR--------TGRIRRAMAIKSFMKWNGCEPDL-- 230 (493)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-- 230 (493)
.. ..+....+.+.+...+...... .+... ....+...+.. .+++++|..+++++.+.. +.+.
T Consensus 166 ~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~ 238 (537)
T 3fp2_A 166 SL----ASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPL 238 (537)
T ss_dssp HH----HHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH
T ss_pred HH----HHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchh
Confidence 22 2223333333333222221111 11111 11222222111 135666666666666542 2222
Q ss_pred -----HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 043480 231 -----VTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNT 305 (493)
Q Consensus 231 -----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 305 (493)
.++..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...+.++....+. +..++..
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 315 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYH 315 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHH
Confidence 234445555666667777777777666543 44566666666666777777777777766665443 5556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 043480 306 VIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSRE 385 (493)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 385 (493)
+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|+
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGD 393 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCC
Confidence 66667777777777777776666532 244566666666677777777777777666543 4445566666666777777
Q ss_pred HhHHHHHHHHHHhCCC-----CCCHhhHHHHHHHHHhc----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 386 IGTAYGVFLDMVEQGI-----TPDVISYNALINGLCKS----------SRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGL 450 (493)
Q Consensus 386 ~~~a~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 450 (493)
+++|...++++.+... ......+..+..++... |++++|...++++.+... .+..++..+..+|
T Consensus 394 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLK 472 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 7777777766654310 00111233334455555 777777777777665422 2566666677777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 043480 451 VQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~ 469 (493)
...|++++|.+.++++.+.
T Consensus 473 ~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 473 LQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh
Confidence 7777777777777776664
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-25 Score=204.21 Aligned_cols=308 Identities=11% Similarity=0.008 Sum_probs=227.9
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
+...|.++..+..++..|.+.|++++|+.+|+++.+.+ |.+...|..++.++...|++++|+..|+++++.+ +.+..+
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 96 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAA 96 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 56678899999999999999999999999999999875 7788999999999999999999999999999875 556788
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCH---hhHHHH------------HHHHhccCCHHHHHH
Q 043480 82 YSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDV---VTYTIV------------IDGLCKAKEFDKAVQ 146 (493)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------~~~~~~~~~~~~a~~ 146 (493)
+..+..++...|++ +.|...|+++.... +.+. ..+..+ ...+...|++++|++
T Consensus 97 ~~~l~~~~~~~g~~-----------~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 97 RLQRGHLLLKQGKL-----------DEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHHHHHHHHTTCH-----------HHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHcCCH-----------HHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999 67778888887752 2234 555555 444888899999999
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043480 147 AWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGC 226 (493)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 226 (493)
.|+++.+.. +.+..++..+..++...|++++|...|+.+.+.. +.+..++..+...|...|++++|+..|+++....
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 241 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD- 241 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999988753 3467788888889999999999999998887654 4567888888888889999999999998887653
Q ss_pred CCCHHHHHHH------------HHHHHccCChHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHccCCHHHHHHHHH
Q 043480 227 EPDLVTYNAI------------LNYYCDEVMLDEAEKLVMEMESCGIEPD-----VYSYNQLLKGLCNSNQLDKAYMFMV 289 (493)
Q Consensus 227 ~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~ 289 (493)
+.+...+..+ ...+...|++++|...++.+.+.. |+ ...+..+..++.+.|++++|...+.
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344444433 555666666666666666665532 32 2245555566666666666666666
Q ss_pred HHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043480 290 KKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRR 329 (493)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (493)
++....+. +...|..+..+|...|++++|...++++.+.
T Consensus 320 ~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 320 EVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 65554322 4555666666666666666666666666553
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-24 Score=200.02 Aligned_cols=372 Identities=10% Similarity=-0.018 Sum_probs=295.8
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCC
Q 043480 111 EVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGK 190 (493)
Q Consensus 111 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 190 (493)
..+...... .+.+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+.+.+..
T Consensus 13 ~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 13 LGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 344444443 35567889999999999999999999999998763 4478899999999999999999999999999875
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHccCChHHHHHHHHH
Q 043480 191 VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDL---VTYNAI------------LNYYCDEVMLDEAEKLVME 255 (493)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~ 255 (493)
+.+..++..+..+|.+.|++++|...|+++.... +.+. ..+..+ ...+...|++++|...++.
T Consensus 91 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 91 -MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4568889999999999999999999999999764 3334 555555 3448889999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH
Q 043480 256 MESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDV 335 (493)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 335 (493)
+.+.. +.+...+..+..+|.+.|++++|...|.++....+. +..++..+...+...|++++|...|+.+..... .+.
T Consensus 169 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~ 245 (450)
T 2y4t_A 169 ILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHK 245 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred HHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChH
Confidence 98754 457788999999999999999999999999887543 788899999999999999999999999987632 244
Q ss_pred hHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 043480 336 VTFTIL------------IKAFLREGSSAMAEKLLNQMRGMNLSPD----RILYTTIIDCLCKSREIGTAYGVFLDMVEQ 399 (493)
Q Consensus 336 ~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 399 (493)
..+..+ ...+...|++++|...|+.+.+.. +.+ ...+..+...+.+.|++++|...++++++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 444444 788999999999999999998753 223 457888999999999999999999999875
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHH------------HHHhcC-----CHHHHHH
Q 043480 400 GITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIG------------GLVQEK-----KLELACR 461 (493)
Q Consensus 400 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~------------~~~~~g-----~~~~a~~ 461 (493)
. +.+..+|..+..+|...|++++|...++++.+. .| +...+..+.. .|...| +.+++.+
T Consensus 325 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~ 401 (450)
T 2y4t_A 325 E-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIK 401 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHH
T ss_pred C-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHH
Confidence 2 446889999999999999999999999999885 45 5777777763 344445 5677888
Q ss_pred HHHH-HHHc--CCCCC-------HHHHHHHHHHHhhchhccC
Q 043480 462 LWDQ-MMEK--GFTLD-------KTVSAALIEAIHLQDAANK 493 (493)
Q Consensus 462 ~~~~-~~~~--~~~~~-------~~~~~~ll~~~~~~~~~~k 493 (493)
.+++ .++. ...|+ ...+..+..+|...++.+|
T Consensus 402 ~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 402 AYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 8887 4432 11122 2377788888887777653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-24 Score=202.58 Aligned_cols=409 Identities=10% Similarity=-0.054 Sum_probs=294.2
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
|++.+|..++.+|.+.|++++|+..|+++.+.+ |.+...|..++.++...|++++|...|+++...+ +++......++
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 114 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPML 114 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHH
Confidence 589999999999999999999999999999986 7778899999999999999999999999998876 44555555555
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC---------C
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGI---------K 157 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~ 157 (493)
..+...... ..+.+.+..+...+..|+...+..-...............+...+..... +
T Consensus 115 ~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (514)
T 2gw1_A 115 ERNLNKQAM-----------SKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDES 183 (514)
T ss_dssp HHHHHHHHH-----------HHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSS
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCC
Confidence 444332222 12222222221111111111111111111111111111111111111111 1
Q ss_pred CCHHhHHHHHHHHhc---cCchhHHHHHHHHHHh-----CCC--------CCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 158 PDNKACAALVVGLCG---DGKVDLAYELTVGAMK-----GKV--------EFGVLIYNALISGFCRTGRIRRAMAIKSFM 221 (493)
Q Consensus 158 ~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 221 (493)
.+...+......+.. .|++++|...|+++.+ ... +.+..++..+...+...|++++|...++++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 263 (514)
T 2gw1_A 184 NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKA 263 (514)
T ss_dssp CHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 123444444444443 7889999998888877 311 223567778888999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh
Q 043480 222 KWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKV 301 (493)
Q Consensus 222 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 301 (493)
.... |+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+.+.....+. +..
T Consensus 264 l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 339 (514)
T 2gw1_A 264 IELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIF 339 (514)
T ss_dssp HHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSH
T ss_pred HhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHH
Confidence 8764 337888888899999999999999999988754 456778888899999999999999999999887654 667
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHhHHHH
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNL-SPD----RILYTTI 376 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l 376 (493)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+... .++ ...+..+
T Consensus 340 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 418 (514)
T 2gw1_A 340 PYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK 418 (514)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 88888899999999999999999998763 33667888899999999999999999998876421 111 3378889
Q ss_pred HHHHHc---cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 377 IDCLCK---SREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 377 ~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
...+.. .|++++|...++++.+.. +.+..++..+..++...|++++|...|+++.+.
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999 999999999999998763 446778889999999999999999999999885
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-22 Score=191.96 Aligned_cols=451 Identities=11% Similarity=0.022 Sum_probs=308.9
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
++..|.++.++..++.+|.+.|++++|++.|+++.+.+ |.+...+..++.++...|++++|+..|+.+ .. .|+..
T Consensus 52 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~--~~~~~- 126 (537)
T 3fp2_A 52 IELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVL-SL--NGDFD- 126 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C---------
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hc--CCCCC-
Confidence 34567899999999999999999999999999999987 778889999999999999999999999744 33 23221
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 043480 82 YSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKG--REPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD 159 (493)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 159 (493)
...+..+...+.. ..|...++.+.... ..+........+..+....+.+.+...+...... .+.
T Consensus 127 -~~~~~~~~~~~~~-----------~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 192 (537)
T 3fp2_A 127 -GASIEPMLERNLN-----------KQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTA 192 (537)
T ss_dssp ------CHHHHHHH-----------HHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSS
T ss_pred -hHHHHHHHHHHHH-----------HHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc--ccH
Confidence 1122223333333 55667777775431 0111112223344455566666665554443322 222
Q ss_pred HH-hHHHHHHHHhc--------cCchhHHHHHHHHHHhCCCCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 160 NK-ACAALVVGLCG--------DGKVDLAYELTVGAMKGKVEFG-------VLIYNALISGFCRTGRIRRAMAIKSFMKW 223 (493)
Q Consensus 160 ~~-~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 223 (493)
.. ....+...+.. .|++++|..+++.+.+.. +.+ ..++..+...+...|++++|...++++..
T Consensus 193 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~ 271 (537)
T 3fp2_A 193 YALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271 (537)
T ss_dssp HHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 22 22223322222 257889999999998764 222 23466777888899999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhH
Q 043480 224 NGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSY 303 (493)
Q Consensus 224 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 303 (493)
. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...+.++....+. +...+
T Consensus 272 ~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~ 347 (537)
T 3fp2_A 272 L--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPY 347 (537)
T ss_dssp H--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHH
T ss_pred c--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 6 5668888899999999999999999999998764 456788999999999999999999999999987654 66788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHhHHHHHH
Q 043480 304 NTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN-----LSPDRILYTTIID 378 (493)
Q Consensus 304 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~ 378 (493)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. .......+.....
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 899999999999999999999998874 3467788999999999999999999999987532 1112223445556
Q ss_pred HHHcc----------CCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043480 379 CLCKS----------REIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIG 448 (493)
Q Consensus 379 ~~~~~----------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 448 (493)
.+... |++++|...++++.+.. +.+...+..+..+|...|++++|...|++..+.... +..... .+
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~-~~- 502 (537)
T 3fp2_A 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART-MDEKLQ-AT- 502 (537)
T ss_dssp HHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CHHHHH-HH-
T ss_pred HHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHH-HH-
Confidence 67777 99999999999999863 446788999999999999999999999999885322 222222 11
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhch
Q 043480 449 GLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQD 489 (493)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 489 (493)
.+.++...-..+. +.+.....+..++..++..|
T Consensus 503 ------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~~ 535 (537)
T 3fp2_A 503 ------TFAEAAKIQKRLR--ADPIISAKMELTLARYRAKG 535 (537)
T ss_dssp ------HHHHHHHHHHHHH--TC------------------
T ss_pred ------hHHHHHHHHHhcc--ccHHHHHHHhhHHHHHhhcc
Confidence 1233334434442 22334555666666666554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-20 Score=178.09 Aligned_cols=430 Identities=10% Similarity=0.031 Sum_probs=290.8
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
++..|.|..+|..++. +.+.|++++|+.+|+++.+.. |.+...|..++..+.+.|++++|..+|++++... |+...
T Consensus 6 l~~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~l 81 (530)
T 2ooe_A 6 LEENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDL 81 (530)
T ss_dssp HHHCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHH
T ss_pred hhhCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHH
Confidence 4567889999999998 588999999999999999985 7888899999999999999999999999999874 67777
Q ss_pred HHHHHHHH-hccCChhhHHHHHHHHHHHHHHHHHHHHhC-CCCC-CHhhHHHHHHHHhc---------cCCHHHHHHHHH
Q 043480 82 YSRFISGL-CEVKNFTLINILLDNMDKLALEVFHKMVSK-GREP-DVVTYTIVIDGLCK---------AKEFDKAVQAWE 149 (493)
Q Consensus 82 ~~~ll~~~-~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~-g~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~ 149 (493)
|..++... ...|+.+.|. +.+..+|+..... |..| +...|...+....+ .|+++.|..+|+
T Consensus 82 w~~~~~~~~~~~~~~~~a~-------~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~ 154 (530)
T 2ooe_A 82 WKCYLSYVRETKGKLPSYK-------EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ 154 (530)
T ss_dssp HHHHHHHHHHHTTTSTTHH-------HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchhhHH-------HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHH
Confidence 77777533 4567777766 3445566665543 4433 56678877776654 688999999999
Q ss_pred HHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------HH
Q 043480 150 HMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFM------KW 223 (493)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~ 223 (493)
+.++....+....|..........|. ..+.. ++. .+.+++..|..++... ..
T Consensus 155 ~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~ 212 (530)
T 2ooe_A 155 RGCVNPMINIEQLWRDYNKYEEGINI-HLAKK-------------------MIE--DRSRDYMNARRVAKEYETVMKGLD 212 (530)
T ss_dssp HHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHH-------------------HHH--TTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhchhhhHHHHHHHHHHHHHhhch-hHHHH-------------------HHH--HhhHHHHHHHHHHHHHHHHHHHhc
Confidence 99873111111222222111100010 00001 110 0123345555544442 11
Q ss_pred CC---CCCC--------HHHHHHHHHHHHcc----CCh----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-------
Q 043480 224 NG---CEPD--------LVTYNAILNYYCDE----VML----DEAEKLVMEMESCGIEPDVYSYNQLLKGLCN------- 277 (493)
Q Consensus 224 ~~---~~~~--------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 277 (493)
.. ++|+ ...|...+...... ++. ..+..+|+++.... +.++..|...+..+.+
T Consensus 213 ~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 213 RNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp SSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhh
Confidence 11 2333 23454444333221 222 36677787777642 4567777777777665
Q ss_pred cCCHH-------HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-H-hHHHHHHHHHHHc
Q 043480 278 SNQLD-------KAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELD-V-VTFTILIKAFLRE 348 (493)
Q Consensus 278 ~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~ 348 (493)
.|+++ +|..++++......+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHh
Confidence 67776 88888888876322336777888888888888999999999888875 333 2 4777888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 043480 349 GSSAMAEKLLNQMRGMNLSPDRILYTTIIDC-LCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHL 427 (493)
Q Consensus 349 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 427 (493)
|+.++|..+|+...+.. +.+...|...+.. +...|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|..+
T Consensus 370 ~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 88999999998888753 2233333332222 335788999999999888752 33577888888888888999999999
Q ss_pred HHHHHHcCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 428 YEEMQIRGA-HP--DEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 428 ~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
|++....+. .| ....|...+......|+.+.+..+.+++.+.
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999887532 22 2457888888888889999999988888765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.8e-21 Score=172.12 Aligned_cols=330 Identities=11% Similarity=0.016 Sum_probs=216.5
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
|+..+..++..+.+.|++++|+..|+++.+.+ |.++..+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 56788899999999999999999999999886 6778899999999999999999999999998874 456788999999
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCC---CCHhhHHHH------------HHHHhccCCHHHHHHHHHHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGRE---PDVVTYTIV------------IDGLCKAKEFDKAVQAWEHMI 152 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~ 152 (493)
++...|++ +.|...+++..... + .+...+..+ ...+...|++++|++.++++.
T Consensus 80 ~~~~~~~~-----------~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 147 (359)
T 3ieg_A 80 LLLKQGKL-----------DEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL 147 (359)
T ss_dssp HHHHHTCH-----------HHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCh-----------HHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999 67778888887742 2 244445444 456667777777777777776
Q ss_pred HCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043480 153 ENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVT 232 (493)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 232 (493)
+.. +.+..++..+...+...|++++|...++.+.... +.+..++..+...+...|++++|...+++..+.. +.+...
T Consensus 148 ~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 224 (359)
T 3ieg_A 148 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRC 224 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHH
Confidence 543 2355666666666666777777777766666553 4455666666666666666666666666665542 222222
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHH
Q 043480 233 YNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDK----VSYNTVIE 308 (493)
Q Consensus 233 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~ 308 (493)
+..+... . .......+...+.+.|++++|...+.+.....+. +. ..+..+..
T Consensus 225 ~~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 225 FAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICH 280 (359)
T ss_dssp HHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHH
Confidence 2211000 0 0001112244455666666666666666554433 22 12334556
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 043480 309 AFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCL 380 (493)
Q Consensus 309 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (493)
++...|++++|...++...+.. +.+...+..+...+...|++++|...|+.+.+.. +.+...+..+..+.
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 6666666666666666666552 2255666666666666777777777777666654 34455555555444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-20 Score=170.21 Aligned_cols=335 Identities=12% Similarity=0.065 Sum_probs=230.5
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 043480 124 DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALIS 203 (493)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 203 (493)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45567777788888888888888888887753 3356777778888888888888888888877654 345667777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 043480 204 GFCRTGRIRRAMAIKSFMKWNGCE---PDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQ 280 (493)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 280 (493)
.+...|++++|...++++.+.. + .+...+..+..... ...+..+...+...|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 8888888888888888877652 2 23333333321100 0112233456666777
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043480 281 LDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQ 360 (493)
Q Consensus 281 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 360 (493)
+++|...+.++....+. +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.
T Consensus 136 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777777665443 55666677777777777777777777776653 33566677777777777777777777777
Q ss_pred HHhCCCCCCHHhHH------------HHHHHHHccCCHhHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCChhHH
Q 043480 361 MRGMNLSPDRILYT------------TIIDCLCKSREIGTAYGVFLDMVEQGITPDV----ISYNALINGLCKSSRVSEA 424 (493)
Q Consensus 361 ~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a 424 (493)
..+.. +.+...+. .+...+...|++++|...++++.+.. +.+. ..+..+..++...|++++|
T Consensus 214 a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 214 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 76643 33333332 23566788899999999999888753 2223 2344577888889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhchhc
Q 043480 425 MHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLD-KTVSAALIEAIHLQDAA 491 (493)
Q Consensus 425 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~ 491 (493)
...+++..+... .+..++..+..++...|++++|...++++.+. .|+ ...+..+..+....+..
T Consensus 292 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~ 356 (359)
T 3ieg_A 292 IRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLLKQS 356 (359)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHh
Confidence 999999887532 27888889999999999999999999999865 444 56667776666555443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-19 Score=169.19 Aligned_cols=418 Identities=9% Similarity=0.058 Sum_probs=289.3
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHH
Q 043480 32 FDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALE 111 (493)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~ 111 (493)
|++.++.+ |.+...|..++. +.+.|++++|..+|+++++.. +.+...|..++..+.+.|++ +.|..
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~-----------~~a~~ 67 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNY-----------DKVEK 67 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCH-----------HHHHH
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCH-----------HHHHH
Confidence 55666665 778889999998 478999999999999998864 56677899999999999999 67788
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHH-hccCCHHHHHH----HHHHHHHC-CCCC-CHHhHHHHHHHHhc---------cCc
Q 043480 112 VFHKMVSKGREPDVVTYTIVIDGL-CKAKEFDKAVQ----AWEHMIEN-GIKP-DNKACAALVVGLCG---------DGK 175 (493)
Q Consensus 112 ~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~ 175 (493)
+|++.+.. .|+...|..++... ...|+++.|.+ +|++.... |..| +...|...+..... .|+
T Consensus 68 ~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 145 (530)
T 2ooe_A 68 LFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR 145 (530)
T ss_dssp HHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred HHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH
Confidence 88888875 46777888777533 45677777665 77776543 4444 45566666655443 678
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 043480 176 VDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVME 255 (493)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 255 (493)
++.|..+|++.+..........|..........+. .+...++. ...+++..|..++..
T Consensus 146 ~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~ 203 (530)
T 2ooe_A 146 ITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKE 203 (530)
T ss_dssp HHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHH
Confidence 88888898888873111111222222111111110 01111111 123456666666655
Q ss_pred H------HHCC---CCCC--------hhhHHHHHHHHHcc----CCH----HHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 043480 256 M------ESCG---IEPD--------VYSYNQLLKGLCNS----NQL----DKAYMFMVKKMEAKGLRDKVSYNTVIEAF 310 (493)
Q Consensus 256 ~------~~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (493)
. .+.. ++|+ ...|...+...... ++. .++...|++++...+. ++..|..++..+
T Consensus 204 ~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~ 282 (530)
T 2ooe_A 204 YETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYL 282 (530)
T ss_dssp HHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 2 2221 2343 24555555433322 233 4778889999887554 778888888887
Q ss_pred HH-------cCCHH-------HHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HhHHH
Q 043480 311 CK-------GGQTR-------RAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDR-ILYTT 375 (493)
Q Consensus 311 ~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 375 (493)
.+ .|+++ +|..+|++..+.-.+.+...+..++..+.+.|++++|..+|+.+.+.. +.+. ..|..
T Consensus 283 ~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~ 361 (530)
T 2ooe_A 283 EQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQ 361 (530)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHH
T ss_pred HHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHH
Confidence 75 68887 899999999863234467888999999999999999999999999863 2333 58999
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043480 376 IIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALING-LCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEK 454 (493)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 454 (493)
++..+.+.|++++|..+|++.++.. +.+...|...+.. +...|++++|..+|++..+... .+...|..++..+.+.|
T Consensus 362 ~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g 439 (530)
T 2ooe_A 362 YMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLN 439 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999762 2233333332222 3468999999999999987532 26899999999999999
Q ss_pred CHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHhhchhc
Q 043480 455 KLELACRLWDQMMEKG-FTLD--KTVSAALIEAIHLQDAA 491 (493)
Q Consensus 455 ~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~ 491 (493)
+.++|..++++++..+ ..|+ ..+|...+......|+.
T Consensus 440 ~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 440 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp CHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred CHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999863 3332 45888777776666653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-20 Score=167.66 Aligned_cols=289 Identities=11% Similarity=-0.002 Sum_probs=154.1
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
..+.++.++..++..+...|++++|+++|+++.+.+ |.+...+..++.++...|++++|...++++.+.. +.++..+.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 345555556666666666666666666666666554 4445555555566666666666666666665543 33445555
Q ss_pred HHHHHHhccC-ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHh
Q 043480 84 RFISGLCEVK-NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKA 162 (493)
Q Consensus 84 ~ll~~~~~~~-~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 162 (493)
.+...+...| ++ +.|...|++.... .+.+...|..+...+...|++++|++.|+++.+.. +.+..+
T Consensus 95 ~l~~~~~~~~~~~-----------~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 161 (330)
T 3hym_B 95 AVGCYYLMVGHKN-----------EHARRYLSKATTL-EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLP 161 (330)
T ss_dssp HHHHHHHHSCSCH-----------HHHHHHHHHHHTT-CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHH
T ss_pred HHHHHHHHhhhhH-----------HHHHHHHHHHHHh-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHH
Confidence 5555555555 55 4444555555443 22234455555555666666666666665555432 112333
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 043480 163 CAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCD 242 (493)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 242 (493)
+..+...+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~al~~~------------------------------------~~~~~~~~~l~~~~~~ 205 (330)
T 3hym_B 162 MLYIGLEYGLTNNSKLAERFFSQALSIA------------------------------------PEDPFVMHEVGVVAFQ 205 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC------------------------------------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------------------------CCChHHHHHHHHHHHH
Confidence 4444444444555555555544444432 3334444445555555
Q ss_pred cCChHHHHHHHHHHHHCC--------CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC
Q 043480 243 EVMLDEAEKLVMEMESCG--------IEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGG 314 (493)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 314 (493)
.|++++|...++.+.+.. .+....++..+...+...|++++|...+.+.....+. +...+..+...+...|
T Consensus 206 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g 284 (330)
T 3hym_B 206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMG 284 (330)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhc
Confidence 555555555555443321 1223445566666666666666666666666655433 4555666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCcCHhHHHHHHHHH
Q 043480 315 QTRRAYKLFEGMRRRGIELDVVTFTILIKAF 345 (493)
Q Consensus 315 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (493)
++++|.+.+++..+.. +.+...+..+..++
T Consensus 285 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 285 NFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 6666666666665542 22445555555555
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.1e-18 Score=158.30 Aligned_cols=397 Identities=12% Similarity=0.022 Sum_probs=309.9
Q ss_pred hHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc----cCChhh
Q 043480 26 DQAVHVFDEMTQSNCRVFSIDYNRFIGVLIR----HSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE----VKNFTL 97 (493)
Q Consensus 26 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~ 97 (493)
..+++.++...+. .++..+..+...|.. .+++++|...|++..+.| ++..+..|...|.. .+++
T Consensus 24 ~~~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~-- 95 (490)
T 2xm6_A 24 NVNLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDY-- 95 (490)
T ss_dssp -CCHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH--
T ss_pred hHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH--
Confidence 3446666666554 357778888888888 899999999999998754 56677788888887 7888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc-
Q 043480 98 INILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCK----AKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCG- 172 (493)
Q Consensus 98 a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 172 (493)
++|.+.|++....| +...+..+...|.. .+++++|++.|++..+.| +..++..+...|..
T Consensus 96 ---------~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g 160 (490)
T 2xm6_A 96 ---------AQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEG 160 (490)
T ss_dssp ---------HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 56677777777654 66777778888887 789999999999998875 66778888888876
Q ss_pred ---cCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---
Q 043480 173 ---DGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCR----TGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCD--- 242 (493)
Q Consensus 173 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--- 242 (493)
.++.++|.+.|++..+.+ +...+..+...|.. .++.++|.++|++..+.+ +...+..+...|..
T Consensus 161 ~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g 234 (490)
T 2xm6_A 161 DGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIG 234 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 789999999999998864 67788888888888 899999999999998765 56677777777775
Q ss_pred -cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc----
Q 043480 243 -EVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCN----SNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKG---- 313 (493)
Q Consensus 243 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 313 (493)
.+++++|...|+...+.+ +...+..+..+|.. .++.++|...|++..+. .+...+..+...|...
T Consensus 235 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~~~~g~ 308 (490)
T 2xm6_A 235 VTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ---GNSDGQYYLAHLYDKGAEGV 308 (490)
T ss_dssp SCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHCBTTB
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCC
Confidence 789999999999988754 45566677777777 88999999999998865 3566777888888887
Q ss_pred -CCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCC
Q 043480 314 -GQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREG---SSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK----SRE 385 (493)
Q Consensus 314 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 385 (493)
+++++|...|++..+.+ +...+..+...|...| +.++|..+|+...+. .+...+..+...|.. .++
T Consensus 309 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 309 AKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCC
T ss_pred cCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCC
Confidence 89999999999998875 4566777777777756 789999999999875 356788888888888 789
Q ss_pred HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHH
Q 043480 386 IGTAYGVFLDMVEQGITPDVISYNALINGLCK----SSRVSEAMHLYEEMQIRGAH-P-DEVTFKLLIGGLVQEKKLELA 459 (493)
Q Consensus 386 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~a 459 (493)
+++|...|++..+.| +...+..|...|.. .+++++|...|++..+.+.. | +......+...+.. +.+.+
T Consensus 383 ~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a 457 (490)
T 2xm6_A 383 EQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQA 457 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHH
T ss_pred HHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHH
Confidence 999999999999875 56778888888887 89999999999999887643 2 34444444433332 33444
Q ss_pred HHHHHHHHH
Q 043480 460 CRLWDQMME 468 (493)
Q Consensus 460 ~~~~~~~~~ 468 (493)
.+...+..+
T Consensus 458 ~~~a~~~~~ 466 (490)
T 2xm6_A 458 ELLSQQYIE 466 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-18 Score=158.38 Aligned_cols=355 Identities=11% Similarity=0.052 Sum_probs=299.0
Q ss_pred CcchhhHHHHHHHHHH----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHhccCCCCc
Q 043480 6 GAQRLIYRAQISNLVK----AGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIR----HSRFDLVQFYYQQMHPLGFSL 77 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 77 (493)
+.++..+..+...|.. .+++++|++.|++..+.| ++..+..+...|.. .+++++|...|++..+.+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 4578888899999998 899999999999998864 46778889999998 899999999999998864
Q ss_pred ChhhHHHHHHHHhc----cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHH
Q 043480 78 TPFTYSRFISGLCE----VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCK----AKEFDKAVQAWE 149 (493)
Q Consensus 78 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 149 (493)
++..+..|...|.. .+++ ++|+..|++....| +...+..+...|.. .+++++|++.|+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~-----------~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDK-----------AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCH-----------HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCH-----------HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 56677778888877 6788 66777777777654 56778888888887 789999999999
Q ss_pred HHHHCCCCCCHHhHHHHHHHHhc----cCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 043480 150 HMIENGIKPDNKACAALVVGLCG----DGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCR----TGRIRRAMAIKSFM 221 (493)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 221 (493)
+..+.| +..++..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++.
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 999874 67888888888887 899999999999999865 56677888888886 78999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc-----CCHHHHHHHHHHHH
Q 043480 222 KWNGCEPDLVTYNAILNYYCD----EVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNS-----NQLDKAYMFMVKKM 292 (493)
Q Consensus 222 ~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~ 292 (493)
.+.+ +...+..+...+.. .++.++|...|+...+.| ++..+..+...|... +++++|...+.+..
T Consensus 250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 8765 45666677777777 899999999999998754 456777788888877 89999999999998
Q ss_pred HcCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhCC
Q 043480 293 EAKGLRDKVSYNTVIEAFCKGG---QTRRAYKLFEGMRRRGIELDVVTFTILIKAFLR----EGSSAMAEKLLNQMRGMN 365 (493)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 365 (493)
+.+ +...+..+...|...| ++++|.+.|++..+.+ +...+..+...|.. .+++++|...|+...+.+
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 863 5677888888888766 7899999999998874 67788888888888 899999999999999865
Q ss_pred CCCCHHhHHHHHHHHHc----cCCHhHHHHHHHHHHhCCC
Q 043480 366 LSPDRILYTTIIDCLCK----SREIGTAYGVFLDMVEQGI 401 (493)
Q Consensus 366 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 401 (493)
+...+..+...|.. .+++++|...|++..+.+.
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 56778888888887 8999999999999998753
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.9e-20 Score=162.72 Aligned_cols=285 Identities=11% Similarity=0.002 Sum_probs=143.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 043480 194 GVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLK 273 (493)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 273 (493)
+...+..+...+...|++++|.++++++.... +.+...+..++..+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 33344444444555555555555555544432 2233334444444455555555555555554432 223444445555
Q ss_pred HHHccC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHH
Q 043480 274 GLCNSN-QLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSA 352 (493)
Q Consensus 274 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 352 (493)
.+...| ++++|...|.++....+. +...|..+...+...|++++|...++++.+.... +...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 555555 555555555555544322 3444555555555555555555555555544221 3344444555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCC--------CCCCHhhHHHHHHHHHhcCChhHH
Q 043480 353 MAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQG--------ITPDVISYNALINGLCKSSRVSEA 424 (493)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~a 424 (493)
+|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+..++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 5555555555443 3445555555555555566666655555555320 022234555555566666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 425 MHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAI 485 (493)
Q Consensus 425 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 485 (493)
...+++..+.... +...+..+..++...|++++|.+.++++.+.. +.+...+..+..++
T Consensus 256 ~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 6666665553211 45555556666666666666666666555431 22344444444444
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-20 Score=165.88 Aligned_cols=267 Identities=10% Similarity=-0.047 Sum_probs=187.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 043480 196 LIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGL 275 (493)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (493)
..+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555555666666666666555543 3445555555555556666666666665555443 23455555555566
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHH-H--------------HHHHHHHcCCHHHHHHHHHHHHHcCCCc-CHhHHH
Q 043480 276 CNSNQLDKAYMFMVKKMEAKGLRDKVSYN-T--------------VIEAFCKGGQTRRAYKLFEGMRRRGIEL-DVVTFT 339 (493)
Q Consensus 276 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 339 (493)
...|++++|...+.++....+.. ...+. . .+..+...|++++|...++++.+..+.. +..++.
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 66666666666666555543321 11111 0 1233337889999999999998764332 577888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 043480 340 ILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSS 419 (493)
Q Consensus 340 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 419 (493)
.+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++++.. +.+..++..+..+|...|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCC
Confidence 99999999999999999999988764 5678899999999999999999999999998763 446788999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 420 RVSEAMHLYEEMQIRGAHP----------DEVTFKLLIGGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 467 (493)
++++|...++++.+..... ...+|..+..+|...|++++|..++++.+
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 9999999999986642221 27889999999999999999998887554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-19 Score=161.85 Aligned_cols=312 Identities=13% Similarity=0.002 Sum_probs=188.8
Q ss_pred HcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHH-HHHHhccCCCC-c--ChhhHHHHHHHHhccCChh
Q 043480 21 KAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQF-YYQQMHPLGFS-L--TPFTYSRFISGLCEVKNFT 96 (493)
Q Consensus 21 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~-~--~~~~~~~ll~~~~~~~~~~ 96 (493)
..+.++.+...|+.+...+ |+ .+...|++++|+. .|++....... | +...+..+...+...|++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~- 80 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRD--AE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDL- 80 (368)
T ss_dssp --------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCH-
T ss_pred CcccHHHHHHHHHHHHcCC--ch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCH-
Confidence 3445555555555554433 11 2233456666666 66655543211 1 234455666666666766
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCch
Q 043480 97 LINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKV 176 (493)
Q Consensus 97 ~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (493)
+.|+..|+++... .+.+..++..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++
T Consensus 81 ----------~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 148 (368)
T 1fch_A 81 ----------PNAVLLFEAAVQQ-DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 148 (368)
T ss_dssp ----------HHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred ----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCH
Confidence 4555566666554 23455666666666777777777777777666543 23556666666667777777
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHH---------------HHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 043480 177 DLAYELTVGAMKGKVEFGVLIYNA---------------LISGFCRTGRIRRAMAIKSFMKWNGCEP--DLVTYNAILNY 239 (493)
Q Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~ 239 (493)
++|...++.+..... .+...+.. .+..+...|++++|...++++.... +. +..++..+...
T Consensus 149 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~ 226 (368)
T 1fch_A 149 RQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVL 226 (368)
T ss_dssp HHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHH
Confidence 777777776665431 12222211 1233337788888888888887763 22 47778888888
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHH
Q 043480 240 YCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRA 319 (493)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 319 (493)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+.++....+. +...+..+..++...|++++|
T Consensus 227 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 227 FNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHH
Confidence 888888888888888887653 345677888888888888888888888888876543 667788888888888888888
Q ss_pred HHHHHHHHHcCCCc----------CHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 043480 320 YKLFEGMRRRGIEL----------DVVTFTILIKAFLREGSSAMAEKLLNQ 360 (493)
Q Consensus 320 ~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 360 (493)
...|+++.+..... ...++..+..++...|+.++|..++..
T Consensus 305 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 305 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 88888877642211 157788888888888998888887763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=164.01 Aligned_cols=269 Identities=10% Similarity=-0.072 Sum_probs=201.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 043480 194 GVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLK 273 (493)
Q Consensus 194 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 273 (493)
+...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34456677777777777777777777777654 5566777777777777888888888887777653 345667777777
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCC---------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cCHhHHHHHHH
Q 043480 274 GLCNSNQLDKAYMFMVKKMEAKGLR---------DKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIE-LDVVTFTILIK 343 (493)
Q Consensus 274 ~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 343 (493)
+|...|++++|...+.++....+.. ....+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 7888888888888877777643220 1122344577888889999999999999887433 15788889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH
Q 043480 344 AFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSE 423 (493)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 423 (493)
.+...|++++|...++.+.+.. +.+..+|..+..+|...|++++|...++++++.. +.+..++..+..+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999988765 5678899999999999999999999999998763 3457889999999999999999
Q ss_pred HHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 424 AMHLYEEMQIRGAH-----------PDEVTFKLLIGGLVQEKKLELACRLWDQM 466 (493)
Q Consensus 424 a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 466 (493)
|...++++.+.... .+..+|..+..++...|+.+.+.++.++-
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 99999998664211 13678999999999999999988877653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-19 Score=162.38 Aligned_cols=235 Identities=8% Similarity=-0.079 Sum_probs=171.4
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
+...+..++..+.+.|++++|++.|+++.+.+ |.+..+|..++.++...|++++|+..|+++++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44558899999999999999999999999986 7788999999999999999999999999998875 556889999999
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCC----------HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPD----------VVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIK 157 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (493)
++...|+++. |+..++++.... +.+ ...+..+...+...|++++|++.|+++.+....
T Consensus 142 ~~~~~g~~~~-----------A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 209 (365)
T 4eqf_A 142 SYTNTSHQQD-----------ACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD 209 (365)
T ss_dssp HHHHTTCHHH-----------HHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCS
T ss_pred HHHccccHHH-----------HHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC
Confidence 9999999954 555555555431 111 223334577888888888888888888875321
Q ss_pred -CCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043480 158 -PDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAI 236 (493)
Q Consensus 158 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 236 (493)
++..++..+...+...|++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++.... +.+..++..+
T Consensus 210 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (365)
T 4eqf_A 210 MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNL 287 (365)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHH
Confidence 146677777777777788888888777777654 4456677777777777777777777777776653 4446667777
Q ss_pred HHHHHccCChHHHHHHHHHHHH
Q 043480 237 LNYYCDEVMLDEAEKLVMEMES 258 (493)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~ 258 (493)
...+...|++++|...++++.+
T Consensus 288 ~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 288 GISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777777654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-17 Score=153.16 Aligned_cols=401 Identities=11% Similarity=-0.039 Sum_probs=246.6
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhccC--------CCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHH
Q 043480 41 RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL--------GFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEV 112 (493)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~ 112 (493)
+.....||.+..++...|++++|++.|++.++. ..+....+|+.+..+|...|++++|...++ +++++
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~----ka~~i 123 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVD----KVKHV 123 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHH----HHHHH
Confidence 344667999999999999999999999987652 112345678899999999999987776663 34444
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH---HhccCchhHHHHHHHHHH
Q 043480 113 FHKMVSKGREPDVVTYTIVIDGLCK--AKEFDKAVQAWEHMIENGIKPDNKACAALVVG---LCGDGKVDLAYELTVGAM 187 (493)
Q Consensus 113 ~~~~~~~g~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~ 187 (493)
..............++.....++.. .+++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+++..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al 202 (472)
T 4g1t_A 124 CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI 202 (472)
T ss_dssp HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH
T ss_pred hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 4443322112234566666555544 457999999999998763 2234455554444 345677888999998888
Q ss_pred hCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 043480 188 KGKVEFGVLIYNALISGFCR----TGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEP 263 (493)
Q Consensus 188 ~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 263 (493)
+.. +.+..++..+...+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.. +.
T Consensus 203 ~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 279 (472)
T 4g1t_A 203 RLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PN 279 (472)
T ss_dssp HHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred hcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CC
Confidence 754 4455666666555544 456788999999887764 6677888889999999999999999999988753 34
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHH
Q 043480 264 DVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIK 343 (493)
Q Consensus 264 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 343 (493)
+..++..+..+|...+....+ .. ...........+..+.|...++....... .+..++..+..
T Consensus 280 ~~~~~~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~ 342 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILAS 342 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHH
Confidence 555666666555322111100 00 00000111112345778888888776643 35667788888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHH--hHHHHHH-HHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043480 344 AFLREGSSAMAEKLLNQMRGMNLSPDRI--LYTTIID-CLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR 420 (493)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (493)
.+...|++++|...|++..+....+... .+..+.. .....|++++|...|++.++. .|+...... .
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~ 411 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------M 411 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------H
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------H
Confidence 8889999999999998888765333221 2223322 234678899999999988875 454332222 2
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHH
Q 043480 421 VSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKG-FTLDKTVS 478 (493)
Q Consensus 421 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ 478 (493)
...+.+++++....++ .+..+|..+..+|...|++++|.+.++++++.+ ..|+...|
T Consensus 412 ~~~l~~~~~~~l~~~p-~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKNG-ADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 2345566666665432 267889999999999999999999999998863 33444433
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-18 Score=153.71 Aligned_cols=234 Identities=12% Similarity=-0.007 Sum_probs=148.2
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
.+...+..++..+...|++++|+.+|+++.+.+ |.+...+..++.++...|++++|...++++.+.. +.+..++..+.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 355667889999999999999999999999876 6788889999999999999999999999998875 55778899999
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHH--------------HH-HHhccCCHHHHHHHHHHH
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIV--------------ID-GLCKAKEFDKAVQAWEHM 151 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~ 151 (493)
.++...|++ +.|++.++++.... +.+...+..+ .. .+...|++++|.+.++++
T Consensus 97 ~~~~~~~~~-----------~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 97 VSHTNEHNA-----------NAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164 (327)
T ss_dssp HHHHHTTCH-----------HHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCH-----------HHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH
Confidence 999999999 66667777777652 2233334333 11 245555666666666665
Q ss_pred HHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 043480 152 IENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLV 231 (493)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 231 (493)
.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+..
T Consensus 165 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 241 (327)
T 3cv0_A 165 LEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVR 241 (327)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHH
Confidence 5442 2234455555555555555555555555554432 2234444445555555555555555555544432 22344
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHH
Q 043480 232 TYNAILNYYCDEVMLDEAEKLVMEME 257 (493)
Q Consensus 232 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 257 (493)
.+..+...+...|++++|...++.+.
T Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 242 VMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44444444444444444444444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-18 Score=152.49 Aligned_cols=283 Identities=11% Similarity=0.078 Sum_probs=132.7
Q ss_pred HcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHH
Q 043480 21 KAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINI 100 (493)
Q Consensus 21 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 100 (493)
+.|++++|.+.++++.. +.+|..++.++.+.|++++|++.|.+ .+|+..|..++.++...|++
T Consensus 15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~----- 77 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNW----- 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCH-----
Confidence 66889999999999832 35899999999999999999999965 35777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHH
Q 043480 101 LLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAY 180 (493)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 180 (493)
++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..++..++..|...|.+++|.
T Consensus 78 ------EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~ 142 (449)
T 1b89_A 78 ------EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAK 142 (449)
T ss_dssp ---------------------------------------CHHHHTTTTT-------CC----------------CTTTHH
T ss_pred ------HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 5555655555442 4457788889999999999999988874 367789999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 043480 181 ELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCG 260 (493)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 260 (493)
..|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......
T Consensus 143 ~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~----- 202 (449)
T 1b89_A 143 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH----- 202 (449)
T ss_dssp HHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----
T ss_pred HHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----
Confidence 999976 47999999999999999999999988 2789999999999999999999554443
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCc------
Q 043480 261 IEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRR-GIEL------ 333 (493)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------ 333 (493)
+...+.-...++..|.+.|.+++|..+++..+... ..-...|+-+.-.|++- ++++.++.++...+. +++|
T Consensus 203 L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~ 280 (449)
T 1b89_A 203 IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAE 280 (449)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHH
T ss_pred HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 23444445678899999999999999999988765 33566777777777764 344444444443322 2222
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHH
Q 043480 334 DVVTFTILIKAFLREGSSAMAEKL 357 (493)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~a~~~ 357 (493)
+...|..+...|...++++.|...
T Consensus 281 ~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 281 QAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHH
Confidence 456788888889999999988764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.6e-17 Score=151.34 Aligned_cols=381 Identities=10% Similarity=-0.094 Sum_probs=250.8
Q ss_pred CcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 76 SLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGRE-PDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 76 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
......|+.+...+...|++++|.+.+ ++|++++......... ....+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~----~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i 123 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECL----RKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV 123 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHH----HHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 344567899999999999998888777 4566666655432223 34578999999999999999999999887642
Q ss_pred -----C-CCC-CHHhHHHHHHHHhc--cCchhHHHHHHHHHHhCCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHH
Q 043480 155 -----G-IKP-DNKACAALVVGLCG--DGKVDLAYELTVGAMKGKVEFGVLIYNALISG---FCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 155 -----~-~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~ 222 (493)
+ ..+ ...++..+..++.. .+++++|...|++..+.. +.+...+..+..+ +...++.++|++.+++..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al 202 (472)
T 4g1t_A 124 CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI 202 (472)
T ss_dssp HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH
T ss_pred hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 1 111 24556555555544 457899999999988764 3345555555444 334567778888888877
Q ss_pred HCCCCCCHHHHHHHHHHHH----ccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 043480 223 WNGCEPDLVTYNAILNYYC----DEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR 298 (493)
Q Consensus 223 ~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 298 (493)
+.. +.+...+..+...+. ..+++++|...+++..... +.+...+..+...|...|++++|...+.++....+.
T Consensus 203 ~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~- 279 (472)
T 4g1t_A 203 RLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN- 279 (472)
T ss_dssp HHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-
T ss_pred hcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-
Confidence 654 445666655554444 3467788888888887654 456777888888999999999999999998887654
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 043480 299 DKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIID 378 (493)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 378 (493)
+..++..+..+|...+... ... ............+..+.|...++...+.. +.+...+..+..
T Consensus 280 ~~~~~~~lg~~y~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~ 342 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQV---------MNL-------RENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILAS 342 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh---------hhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHH
Confidence 5566666655553221110 000 00001111112334678889998888765 566678889999
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCCHh--hHHHHHH-HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043480 379 CLCKSREIGTAYGVFLDMVEQGITPDVI--SYNALIN-GLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKK 455 (493)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 455 (493)
.+...|++++|...|++.++....|... .+..+.. .....|++++|+..+++..+. .|+...... .
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~ 411 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------M 411 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------H
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------H
Confidence 9999999999999999999864333221 2333332 335789999999999999884 454332222 2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhchhccC
Q 043480 456 LELACRLWDQMMEKGFTLDKTVSAALIEAIHLQDAANK 493 (493)
Q Consensus 456 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~k 493 (493)
...+.+++++.++.+ +.+..++..+-..|...|+.++
T Consensus 412 ~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~ 448 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQ 448 (472)
T ss_dssp HHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 344556666666543 4567888999889988887653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-18 Score=152.11 Aligned_cols=266 Identities=9% Similarity=-0.047 Sum_probs=180.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 043480 197 IYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLC 276 (493)
Q Consensus 197 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 276 (493)
.+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 33444445555555555555555554432 3344455555555555555555555555554432 234445555555555
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHH
Q 043480 277 NSNQLDKAYMFMVKKMEAKGLRDKVSYNTV--------------IE-AFCKGGQTRRAYKLFEGMRRRGIELDVVTFTIL 341 (493)
Q Consensus 277 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 341 (493)
..|++++|...+.++....+. +...+..+ .. .+...|++++|.+.++++.+... .+...+..+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 178 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASL 178 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHH
Confidence 555555555555555544322 12222221 22 25667888899999988887643 367788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 043480 342 IKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRV 421 (493)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 421 (493)
...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 889999999999999999888765 5667888999999999999999999999988753 44677888999999999999
Q ss_pred hHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 422 SEAMHLYEEMQIRGAHP-----------DEVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 422 ~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
++|.+.++++.+....+ +..++..+..++...|++++|..++++.++
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999987653221 477888999999999999999998876543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-15 Score=147.17 Aligned_cols=403 Identities=13% Similarity=0.109 Sum_probs=285.7
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCR---VFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
.||.--...+++|+..|.+.+|+++++++.-.+ . .+....+.++..-.+. +..+..+..++.-.. ...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~-s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~ 1053 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDN-SVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAP 1053 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCC-CcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHH
Confidence 344455678899999999999999999998432 2 2345566666555555 444555554444211 123
Q ss_pred HHHHHHhccCChhhHHHHHHHHH----------------HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 043480 84 RFISGLCEVKNFTLINILLDNMD----------------KLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQA 147 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~----------------~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 147 (493)
.+...+...|.+++|..++++.. ++|.++.++. -+..+|..+..++...|++++|++.
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 34555666666666666665543 3333333322 2467888899999999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043480 148 WEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCE 227 (493)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (493)
|.+. -|...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.+++++..... + .
T Consensus 1128 YiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1128 YIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred HHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence 8653 377788889999999999999999998877754 33344446888899998888544332 1 4
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 043480 228 PDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVI 307 (493)
Q Consensus 228 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 307 (493)
++...+..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+..+|..+.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence 56677778888999999999999999885 37888999999999999999988876 3668888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc--CC
Q 043480 308 EAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKS--RE 385 (493)
Q Consensus 308 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~ 385 (493)
.+|...|++..|......+ ..++..+..++..|.+.|.+++|+++++...... +-....|+.+...|++. ++
T Consensus 1258 ~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHH
Confidence 8898999988888766543 2366777889999999999999999998888665 55667787777777664 34
Q ss_pred HhHHHHHHHHHHhCCCCC------CHhhHHHHHHHHHhcCChhHHHHHH-------------HHHHHcCCCCCHHHHHHH
Q 043480 386 IGTAYGVFLDMVEQGITP------DVISYNALINGLCKSSRVSEAMHLY-------------EEMQIRGAHPDEVTFKLL 446 (493)
Q Consensus 386 ~~~a~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~-------------~~~~~~~~~p~~~~~~~l 446 (493)
..++.++|..-.. ++| +...|..+...|.+.|+++.|.... +..... ..|+..|...
T Consensus 1332 lmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyyka 1407 (1630)
T 1xi4_A 1332 MREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRA 1407 (1630)
T ss_pred HHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHH
Confidence 5556666554332 222 4677999999999999999988322 222211 2367777777
Q ss_pred HHHHHhcC---------------CHHHHHHHHH
Q 043480 447 IGGLVQEK---------------KLELACRLWD 464 (493)
Q Consensus 447 ~~~~~~~g---------------~~~~a~~~~~ 464 (493)
+.-|...+ |++.+.+++.
T Consensus 1408 i~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1408 IQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 77777666 6666666655
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-17 Score=147.43 Aligned_cols=333 Identities=11% Similarity=0.115 Sum_probs=160.5
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
+++.+|..|+.++.+.|++++|++.|.+. +|...|..++..+...|++++|+..++..++. .+++.+.+.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 45679999999999999999999999653 56778999999999999999999988877764 56678899999
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAAL 166 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (493)
.+|.+.|++. .+.++++ .|+..+|+.+...|...|++++|...|..+ ..|..+
T Consensus 102 ~~Y~Klg~l~-----------e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~L 154 (449)
T 1b89_A 102 FALAKTNRLA-----------ELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 154 (449)
T ss_dssp -------CHH-----------HHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHH
T ss_pred HHHHHhCCHH-----------HHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHH
Confidence 9999999994 4444442 467789999999999999999999999976 479999
Q ss_pred HHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 043480 167 VVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVML 246 (493)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 246 (493)
+.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++.....++..|.+.|.+
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCH
Confidence 99999999999999999988 27889999999999999999996655442 33444456788999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc--CCHHHHHHHHHHHHHcCC----CCChhhHHHHHHHHHHcCCHHHHH
Q 043480 247 DEAEKLVMEMESCGIEPDVYSYNQLLKGLCNS--NQLDKAYMFMVKKMEAKG----LRDKVSYNTVIEAFCKGGQTRRAY 320 (493)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~ 320 (493)
+++..+++...... +-....|+-+.-+|++- +++.+.++.|...+...+ ..+...|..+...|...++++.|.
T Consensus 224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 224 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 99999999988654 44566777776666653 455555555543221100 014567889999999999999886
Q ss_pred HHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHH
Q 043480 321 KLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLD 395 (493)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 395 (493)
. .|.++ +++...-..+.....+..+.+--.+...-..+. .| ..++.++.++...=|..++..++++
T Consensus 303 ~---tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p--~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 303 I---TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp H---HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred H---HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CH--HHHHHHHHHHHhccCcHHHHHHHHH
Confidence 5 34443 233333334444445555555444433333321 22 2356666666555555555555543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-15 Score=148.00 Aligned_cols=377 Identities=12% Similarity=0.072 Sum_probs=210.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhccCC--CCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCC
Q 043480 44 SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG--FSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGR 121 (493)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~ 121 (493)
+.--...+++|...|.+.+|+++++++...+ ++.+...-+.++.+..+. +.. +..+...++.
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~-----------Rv~eyI~kLd---- 1048 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRT-----------RVMEYINRLD---- 1048 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-Chh-----------hHHHHHHHhh----
Confidence 3344567788889999999999999998442 113344555566665555 332 2222333221
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHH
Q 043480 122 EPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNAL 201 (493)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (493)
......+...+...|.+++|..+|++... .....+.++. ..+++++|.++.+++. +..+|..+
T Consensus 1049 ---~~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqL 1111 (1630)
T 1xi4_A 1049 ---NYDAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQL 1111 (1630)
T ss_pred ---hccHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHH
Confidence 11123355666667777777777776421 1122222222 4566666666666442 35566667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH
Q 043480 202 ISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQL 281 (493)
Q Consensus 202 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 281 (493)
..++...|++++|.+.|.+. .|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|.+.+++
T Consensus 1112 AKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1112 AKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRL 1183 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCH
Confidence 77777777777777766543 355666666777777777777777776655533 3333333466666666666
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043480 282 DKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQM 361 (493)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 361 (493)
++... | +. .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.++..
T Consensus 1184 eele~-f---I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1184 AELEE-F---IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHH-H---Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 64322 2 11 124445555666666677777777666663 25666666666677777766666654
Q ss_pred HhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 043480 362 RGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEV 441 (493)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 441 (493)
.+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-+..
T Consensus 1248 ------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~g 1315 (1630)
T 1xi4_A 1248 ------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMG 1315 (1630)
T ss_pred ------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhH
Confidence 23356666666666666666666554432 2244455566666666666666666666655432 11344
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHhhchhc
Q 043480 442 TFKLLIGGLVQE--KKLELACRLWDQMMEKGFTL------DKTVSAALIEAIHLQDAA 491 (493)
Q Consensus 442 ~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~~~~ 491 (493)
.|+-+...|.+. ++..++.+.|..-. ++++ +...|..++.-|.+.|++
T Consensus 1316 mftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~ 1371 (1630)
T 1xi4_A 1316 MFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEY 1371 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccH
Confidence 554454444443 33334443333221 2222 344555555555555544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-17 Score=142.01 Aligned_cols=253 Identities=11% Similarity=0.008 Sum_probs=124.8
Q ss_pred HHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChh
Q 043480 17 SNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFT 96 (493)
Q Consensus 17 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 96 (493)
+.....|++..|+..++.....++.+.......+.++|...|+++.|+..++.. -+|+..++..+...+...++.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~- 81 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR- 81 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH-
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH-
Confidence 344455666666666655544321111223344455666666666666544331 134445555555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCc
Q 043480 97 LINILLDNMDKLALEVFHKMVSKGREP-DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGK 175 (493)
Q Consensus 97 ~a~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (493)
+.|++.++++...+..| +...+..+...+...|++++|++.+++ +.+..++..++..+.+.|+
T Consensus 82 ----------~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~ 145 (291)
T 3mkr_A 82 ----------DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDR 145 (291)
T ss_dssp ----------HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTC
T ss_pred ----------HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCC
Confidence 44555555555543222 344444455556666666666666554 2344555555555555566
Q ss_pred hhHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 043480 176 VDLAYELTVGAMKGKVEFGVLIY---NALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKL 252 (493)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 252 (493)
+++|.+.++.+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...
T Consensus 146 ~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 146 LDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666655555555432 221111 111222223355555555555555442 44455555555555555555555555
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCCHHH-HHHHHHHHHHc
Q 043480 253 VMEMESCGIEPDVYSYNQLLKGLCNSNQLDK-AYMFMVKKMEA 294 (493)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 294 (493)
++++.+.. +.++.++..++..+...|+.++ +..+++++...
T Consensus 223 l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 223 LQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 55554432 2344455555555555555443 33444444444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-17 Score=142.13 Aligned_cols=249 Identities=11% Similarity=0.017 Sum_probs=143.8
Q ss_pred ccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 043480 172 GDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEK 251 (493)
Q Consensus 172 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 251 (493)
..|++..|+..++.+..............+..+|...|+++.|+..++.. -+|+..++..+...+...++.++|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 44555555555544433211111223334455666666666666544331 24555566666666666666666666
Q ss_pred HHHHHHHCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 043480 252 LVMEMESCGIEP-DVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRG 330 (493)
Q Consensus 252 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 330 (493)
.++.+...+..| +...+..+...+...|++++|+..+.+ ..+...+..++..+.+.|++++|.+.|+.+.+..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 666666554323 344455555666666666666666655 2355566666666777777777777777766653
Q ss_pred CCcCHhHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhh
Q 043480 331 IELDVVTF---TILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVIS 407 (493)
Q Consensus 331 ~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 407 (493)
|+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++++.. +-+..+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 332111 112222233466777777777776653 5566677777777777777777777777766642 335566
Q ss_pred HHHHHHHHHhcCChhH-HHHHHHHHHHc
Q 043480 408 YNALINGLCKSSRVSE-AMHLYEEMQIR 434 (493)
Q Consensus 408 ~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 434 (493)
+..++..+...|+.++ +.++++++.+.
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 6777777777777654 45677776664
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-17 Score=135.20 Aligned_cols=201 Identities=11% Similarity=-0.020 Sum_probs=139.7
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
+|+++..+..+...+.+.|++++|+..|+++++.+ |.++..+..+..++.+.|++++|+..|++.++.. +.+...+..
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 78 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV 78 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 58899999999999999999999999999999987 7888999999999999999999999999999875 556678888
Q ss_pred HHHHHhcc-----------CChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043480 85 FISGLCEV-----------KNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIE 153 (493)
Q Consensus 85 ll~~~~~~-----------~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (493)
+..++... |++ ++|+..+++.++. .+.+...+..+..++...|++++|++.|++..+
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~-----------~~A~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYL-----------EQALSVLKDAERV-NPRYAPLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHH-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCH-----------HHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 88888777 666 4555666666554 233556666677777777777777777777766
Q ss_pred CCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 154 NGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
.. .+...+..+..++...|++++|...|+...+.. +.+...+..+...+...|++++|...+++..
T Consensus 147 ~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 147 LE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred cc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 55 466666666666777777777777776666543 3345556666666666666666666665543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-14 Score=134.72 Aligned_cols=145 Identities=8% Similarity=0.115 Sum_probs=111.3
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC---hhHHHHHHHHhccCC-CCc
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSR---FDLVQFYYQQMHPLG-FSL 77 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~ 77 (493)
|...|.|...|..++..+.+.+.++.|+.+|+++... .|.+...|...+....+.|+ ++.+..+|++.+... .+|
T Consensus 59 l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~ 137 (679)
T 4e6h_A 59 IEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNN 137 (679)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCC
T ss_pred HHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCC
Confidence 4567899999999999999999999999999999988 48888899999999999999 999999999999874 138
Q ss_pred ChhhHHHHHHHHhccCCh----hhHHHHHHHHHHHHHHHHHHHHh-CCC-CC-CHhhHHHHHHHHhc---------cCCH
Q 043480 78 TPFTYSRFISGLCEVKNF----TLINILLDNMDKLALEVFHKMVS-KGR-EP-DVVTYTIVIDGLCK---------AKEF 141 (493)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~a~~~~~~~~~-~g~-~~-~~~~~~~l~~~~~~---------~~~~ 141 (493)
++..|...+......++. +.+. +...++|+..+. .|. .+ +...|...+..... ++++
T Consensus 138 sv~LW~~Yl~f~~~~~~~~~~~~~~r-------~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 138 DLSLWLSYITYVRKKNDIITGGEEAR-------NIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CHHHHHHHHHHHHHHSCSTTTHHHHH-------HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccchhH-------HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 888888888766665554 2333 445567776554 355 44 35688888765442 3457
Q ss_pred HHHHHHHHHHHHC
Q 043480 142 DKAVQAWEHMIEN 154 (493)
Q Consensus 142 ~~a~~~~~~~~~~ 154 (493)
+.+..+|++.+..
T Consensus 211 ~~~R~iy~raL~i 223 (679)
T 4e6h_A 211 QYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhC
Confidence 8889999998863
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-15 Score=141.13 Aligned_cols=347 Identities=12% Similarity=0.023 Sum_probs=201.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh---hHHHHHHHHhccCCCCcChhhHHHHHHHHh
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRF---DLVQFYYQQMHPLGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (493)
.++..+.+.|++++|+++|+++.+.| ++..+..+...+...|+. ++|...|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 46788899999999999999998765 344566677777778888 8999999998753 5566677766454
Q ss_pred ccC-----ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHH---HHHHHHHHHHHCCCCCCHHh
Q 043480 91 EVK-----NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFD---KAVQAWEHMIENGIKPDNKA 162 (493)
Q Consensus 91 ~~~-----~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~ 162 (493)
..+ ++ ++|+..|++....|. ...+..|...|...+..+ .+.+.+......| +...
T Consensus 81 ~~~~~~~~~~-----------~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a 143 (452)
T 3e4b_A 81 AKPGATEAEH-----------HEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEA 143 (452)
T ss_dssp TC--CCHHHH-----------HHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTH
T ss_pred hCCCCCCcCH-----------HHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHH
Confidence 444 33 667788888877653 336777777777665443 3445555555443 3456
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043480 163 CAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTG---RIRRAMAIKSFMKWNGCEPDLVTYNAILNY 239 (493)
Q Consensus 163 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 239 (493)
...+...|...+.++.+........+.-...+...+..+...|...| +.++|++.|++....| +++...+..+...
T Consensus 144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~ 222 (452)
T 3e4b_A 144 GLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARV 222 (452)
T ss_dssp HHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
Confidence 66777777777755544443222222111223347777778888888 7888888888888777 5566655566666
Q ss_pred HHcc----CChHHHHHHHHHHHHCCCCCChhhHHHHHHH-H--HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHH
Q 043480 240 YCDE----VMLDEAEKLVMEMESCGIEPDVYSYNQLLKG-L--CNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCK 312 (493)
Q Consensus 240 ~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (493)
|... +++++|...|+... . -++..+..+... + ...+++++|...|.+..+.+ +...+..+...|.
T Consensus 223 y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 223 LGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY- 294 (452)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-
T ss_pred HhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-
Confidence 6544 67788888887776 2 344555555555 3 45677777777777777653 5556666666665
Q ss_pred cC-----CHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc-
Q 043480 313 GG-----QTRRAYKLFEGMRRRGIELDVVTFTILIKAFLR----EGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK- 382 (493)
Q Consensus 313 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 382 (493)
.| ++++|.+.|++.. .| +......+...|.. ..+.++|..+|+...+.|. + .....+...|..
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~G 367 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-N--SADFAIAQLFSQG 367 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-T--THHHHHHHHHHSC
T ss_pred cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-H--HHHHHHHHHHHhC
Confidence 34 7777777777666 32 44555555555544 3367777777777666542 2 233444444442
Q ss_pred ---cCCHhHHHHHHHHHHhCC
Q 043480 383 ---SREIGTAYGVFLDMVEQG 400 (493)
Q Consensus 383 ---~~~~~~a~~~~~~~~~~~ 400 (493)
..+..+|...|+...+.|
T Consensus 368 ~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 368 KGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTBCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHCC
Confidence 346667777776666655
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.9e-18 Score=161.82 Aligned_cols=138 Identities=15% Similarity=0.198 Sum_probs=114.7
Q ss_pred CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhH
Q 043480 332 ELDVVTFTILIKAFLREGSSAMAEKLLNQMRG---MNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISY 408 (493)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 408 (493)
..-..||+++|.+|++.|++++|.++|+.|.+ .|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34567899999999999999999999988764 477899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043480 409 NALINGLCKSSRV-SEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLD 474 (493)
Q Consensus 409 ~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 474 (493)
+++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++.++++ .-++.|+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 9999999999885 78889999999999999999999888766554 333444444 2255554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-15 Score=129.40 Aligned_cols=225 Identities=12% Similarity=0.045 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--C----hhhHH
Q 043480 231 VTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR--D----KVSYN 304 (493)
Q Consensus 231 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~ 304 (493)
..+..+...+...|++++|...++.+.+.. .+...+..+..++...|++++|...+.+.....+.. + ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344555555666666666666666665544 455566666666666666666666666655533221 1 45566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 043480 305 TVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSR 384 (493)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 384 (493)
.+...+...|++++|.+.|++..+.. |+. ..+...|++++|...++.+.+.. +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 67777777777777777777777652 332 34556677888888888877654 445667778888888888
Q ss_pred CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043480 385 EIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWD 464 (493)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 464 (493)
++++|...++++++.. +.+..++..+..++...|++++|...++++.+... .+...+..+..++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888888753 44677788888888888888888888888877532 257888888888888888888888888
Q ss_pred HHHHc
Q 043480 465 QMMEK 469 (493)
Q Consensus 465 ~~~~~ 469 (493)
++.+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88765
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-18 Score=162.02 Aligned_cols=151 Identities=14% Similarity=0.173 Sum_probs=125.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 043480 299 DKVSYNTVIEAFCKGGQTRRAYKLFEGMRR---RGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTT 375 (493)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 375 (493)
-..+|+++|++|++.|++++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999988764 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCC-HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC------HHHHHHHHH
Q 043480 376 IIDCLCKSRE-IGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD------EVTFKLLIG 448 (493)
Q Consensus 376 l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~ 448 (493)
+|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. ..++.++++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999998 478999999999999999999999998765544 344444444 3344443 444455666
Q ss_pred HHHhcC
Q 043480 449 GLVQEK 454 (493)
Q Consensus 449 ~~~~~g 454 (493)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.7e-16 Score=126.95 Aligned_cols=199 Identities=15% Similarity=0.017 Sum_probs=130.5
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHH
Q 043480 263 PDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILI 342 (493)
Q Consensus 263 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 342 (493)
++...+..+...+.+.|++++|...|++.+...+. +...+..+...+...|++++|+..+++..+..+ .+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 44455555556666666666666666666555443 555566666666666666666666666665532 2455556666
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHH
Q 043480 343 KAFLRE-----------GSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNAL 411 (493)
Q Consensus 343 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 411 (493)
.++... |++++|...++...+.. +.+...+..+..++...|++++|...|++.++.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 88888888888888765 5567788888888888888888888888888765 577888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 412 INGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 467 (493)
..++...|++++|+..+++..+..+. +...+..+..++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888899998888888775322 67888888888888888888888887764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-13 Score=129.34 Aligned_cols=443 Identities=12% Similarity=0.066 Sum_probs=308.2
Q ss_pred ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCC---hhhHHH
Q 043480 24 LIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKN---FTLINI 100 (493)
Q Consensus 24 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~ 100 (493)
...+-+..|++.+..+ |.|...|..++..+...+.++.+..+|++++.. .+.....|...+..-.+.++ +
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~----- 119 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDA----- 119 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCH-----
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchH-----
Confidence 4556677788888877 789999999999999999999999999999886 36677788888888888877 7
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHhccCCH--------HHHHHHHHHHHH-CCC-CCC-HHhHHHHHH
Q 043480 101 LLDNMDKLALEVFHKMVSKG-REPDVVTYTIVIDGLCKAKEF--------DKAVQAWEHMIE-NGI-KPD-NKACAALVV 168 (493)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~ 168 (493)
+.+.++|++.+... .+|++..|...+....+.++. +.+.++|+..+. .|. .++ ...|...+.
T Consensus 120 ------~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~ 193 (679)
T 4e6h_A 120 ------AVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLH 193 (679)
T ss_dssp ------HHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 67788999998862 148888998888766655543 344578887664 365 554 456666655
Q ss_pred HHh---------ccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-------------cCCHHHHHHHHHHHHH--C
Q 043480 169 GLC---------GDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCR-------------TGRIRRAMAIKSFMKW--N 224 (493)
Q Consensus 169 ~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~--~ 224 (493)
... ..++++.+..+|..++......-..+|......-.. ..+++.|...+.++.. .
T Consensus 194 f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~ 273 (679)
T 4e6h_A 194 FLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITK 273 (679)
T ss_dssp HHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 433 234577889999999863222122333322111111 1223445555544322 1
Q ss_pred CC----C-----------C-----C---HHHHHHHHHHHHccC-------ChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 043480 225 GC----E-----------P-----D---LVTYNAILNYYCDEV-------MLDEAEKLVMEMESCGIEPDVYSYNQLLKG 274 (493)
Q Consensus 225 ~~----~-----------~-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (493)
++ + | + ...|...+..--..+ ..+.+..+|+++... ++..+..|...+..
T Consensus 274 ~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~ 352 (679)
T 4e6h_A 274 GLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANY 352 (679)
T ss_dssp TCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHH
T ss_pred hHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 11 1 1 0 133444444333222 123456678887764 35578888888888
Q ss_pred HHccCCHHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------CcC----------
Q 043480 275 LCNSNQLDKAY-MFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGI---------ELD---------- 334 (493)
Q Consensus 275 ~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~---------- 334 (493)
+...|+.+.|. .++.+.....+ .+...|-..+....+.|++++|.++|+.+..... .|+
T Consensus 353 ~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~ 431 (679)
T 4e6h_A 353 QGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431 (679)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence 88899998996 99999987654 3666677788888899999999999999886410 121
Q ss_pred --HhHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHcc-CCHhHHHHHHHHHHhCCCCCCHhhHHH
Q 043480 335 --VVTFTILIKAFLREGSSAMAEKLLNQMRGM-NLSPDRILYTTIIDCLCKS-REIGTAYGVFLDMVEQGITPDVISYNA 410 (493)
Q Consensus 335 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~ 410 (493)
...|...+....+.|+.+.|..+|....+. + ......|...+..-.+. ++.+.|..+|+..++. .+-+...|..
T Consensus 432 ~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~ 509 (679)
T 4e6h_A 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINK 509 (679)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHH
Confidence 235777777777889999999999999875 2 23344554444444444 4589999999999986 4556677788
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 411 LINGLCKSSRVSEAMHLYEEMQIRGAHP--DEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAI 485 (493)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 485 (493)
.+......|+.+.|..+|++.......+ ....|...++.-.+.|+.+.+.++.+++.+. .|+......+..-|
T Consensus 510 y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 510 YLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 8888888999999999999998864322 3578888888889999999999999999986 45555555555444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-15 Score=138.38 Aligned_cols=379 Identities=12% Similarity=0.034 Sum_probs=252.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhH
Q 043480 49 RFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTY 128 (493)
Q Consensus 49 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 128 (493)
.+...+.+.|++++|.++|++..+.| ++..+..|...+...|+.... ++|+..|++.... ++..+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~--------~~A~~~~~~A~~~----~~~A~ 72 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQI--------KQAEATYRAAADT----SPRAQ 72 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------------------CH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCH--------HHHHHHHHHHHhC----CHHHH
Confidence 36677889999999999999998765 333445555566666655211 3566677766542 56667
Q ss_pred HHHHHHHhccC-----CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhH---HHHHHHHHHhCCCCCChhhHHH
Q 043480 129 TIVIDGLCKAK-----EFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDL---AYELTVGAMKGKVEFGVLIYNA 200 (493)
Q Consensus 129 ~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~ 200 (493)
..+...+...+ ++++|+..|++..+.|. ...+..+...|...+..+. +.+.+......+ +......
T Consensus 73 ~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~ 146 (452)
T 3e4b_A 73 ARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLA 146 (452)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHH
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHH
Confidence 77777555554 78999999999998763 3377777877776665443 455555554433 4566777
Q ss_pred HHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 043480 201 LISGFCRTGRI----RRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEV---MLDEAEKLVMEMESCGIEPDVYSYNQLLK 273 (493)
Q Consensus 201 l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 273 (493)
+...|...+.+ +.+..+++... ..++..+..+...|...| +.++|...|+...+.| +++...+..+..
T Consensus 147 Lg~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~ 221 (452)
T 3e4b_A 147 QVLLYRTQGTYDQHLDDVERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVAR 221 (452)
T ss_dssp HHHHHHHHTCGGGGHHHHHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHH
Confidence 88888887754 44444554444 233347788888888899 9999999999999887 455555566777
Q ss_pred HHHcc----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHH
Q 043480 274 GLCNS----NQLDKAYMFMVKKMEAKGLRDKVSYNTVIEA-F--CKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFL 346 (493)
Q Consensus 274 ~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (493)
+|... +++++|...|.+.. . .++..+..+... + ...+++++|.+.|++..+.| +...+..+...|.
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY 294 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 77655 79999999999987 2 366677777776 4 45899999999999999876 6667777777776
Q ss_pred HcC-----CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 043480 347 REG-----SSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK----SREIGTAYGVFLDMVEQGITPDVISYNALINGLCK 417 (493)
Q Consensus 347 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 417 (493)
.| ++++|...|+... +-+...+..+...|.. ..++++|...|++..+.| +......|...|..
T Consensus 295 -~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 295 -EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQ 366 (452)
T ss_dssp -HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHS
T ss_pred -cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHh
Confidence 55 9999999999877 3456677777777766 348999999999999876 34456667776664
Q ss_pred ----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 418 ----SSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 418 ----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
..+.++|...|+...+.|.. +.......+......++..+|.++.++..+.
T Consensus 367 G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 367 GKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp CTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 46899999999999887632 2222222222233345677777777776654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-15 Score=135.10 Aligned_cols=252 Identities=10% Similarity=0.030 Sum_probs=192.5
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHHhccCCCCcChhh
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSR-FDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
...|.+..+|..+...+.+.|++++|++.|+++++.+ |.+...|+.+..++...|+ +++|+..|+++++.. +.+..+
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a 168 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQV 168 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHH
Confidence 3456677889999999999999999999999999987 7778899999999999996 999999999999875 556788
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 043480 82 YSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNK 161 (493)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (493)
|..+..++...|++ +.|+..|++++.. .+.+...|..+..++...|++++|++.|+++++... .+..
T Consensus 169 ~~~~g~~~~~~g~~-----------~eAl~~~~kal~l-dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~ 235 (382)
T 2h6f_A 169 WHHRRVLVEWLRDP-----------SQELEFIADILNQ-DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNS 235 (382)
T ss_dssp HHHHHHHHHHHTCC-----------TTHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHHHHHHccCH-----------HHHHHHHHHHHHh-CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHH
Confidence 99999999999999 5566777777775 355788899999999999999999999999998642 3678
Q ss_pred hHHHHHHHHhc-cCchhHH-----HHHHHHHHhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHH
Q 043480 162 ACAALVVGLCG-DGKVDLA-----YELTVGAMKGKVEFGVLIYNALISGFCRTG--RIRRAMAIKSFMKWNGCEPDLVTY 233 (493)
Q Consensus 162 ~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~ 233 (493)
+|..+..++.. .|..++| +..+++.+... +-+...|+.+...+...| ++++|++.+.++ +. .+.+...+
T Consensus 236 a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al 312 (382)
T 2h6f_A 236 VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLI 312 (382)
T ss_dssp HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHH
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHH
Confidence 88888888888 5665777 47777777654 445677777777777777 577888877777 33 25566677
Q ss_pred HHHHHHHHccC---------ChHHHHHHHHHH-HHCCCCCChhhHHHHHH
Q 043480 234 NAILNYYCDEV---------MLDEAEKLVMEM-ESCGIEPDVYSYNQLLK 273 (493)
Q Consensus 234 ~~ll~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~ 273 (493)
..+...|.+.| ..++|..+++.+ .+.. +.....|..+..
T Consensus 313 ~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~ 361 (382)
T 2h6f_A 313 AFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGR 361 (382)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 77777777653 247788888777 4432 222334444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-15 Score=127.07 Aligned_cols=225 Identities=12% Similarity=0.038 Sum_probs=158.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC--CCC----hhhHH
Q 043480 196 LIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGI--EPD----VYSYN 269 (493)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 269 (493)
..+..+...+...|++++|...|+++.+.. .+...+..+...+...|++++|...++.+.+... .++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555666666666666666666666554 5555666666666666666666666666554320 111 35666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcC
Q 043480 270 QLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREG 349 (493)
Q Consensus 270 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 349 (493)
.+...+...|++++|...+.+.....+. ...+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch---------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 6777777777777777777777765332 234555677888888888877653 235566777888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 043480 350 SSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYE 429 (493)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (493)
++++|...++.+.+.. +.+...+..+...+...|++++|...++++++.. +.+...+..+..++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888887755 5567888888888888899999999888888753 4457778888888888999999998888
Q ss_pred HHHHc
Q 043480 430 EMQIR 434 (493)
Q Consensus 430 ~~~~~ 434 (493)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88664
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.2e-14 Score=120.97 Aligned_cols=227 Identities=11% Similarity=-0.047 Sum_probs=174.6
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHhccCCCCcChh
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIR----HSRFDLVQFYYQQMHPLGFSLTPF 80 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 80 (493)
.|.++.++..+...|...|++++|++.|+++.+. .+...+..+...+.. .+++++|...|++..+.+ ++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 75 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 75 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH
Confidence 4677888899999999999999999999999883 345678888888998 999999999999998864 667
Q ss_pred hHHHHHHHHhc----cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHH
Q 043480 81 TYSRFISGLCE----VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCK----AKEFDKAVQAWEHMI 152 (493)
Q Consensus 81 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 152 (493)
.+..+...+.. .+++ ++|+..|++....+ +..++..+...|.. .+++++|++.|++..
T Consensus 76 a~~~lg~~~~~g~~~~~~~-----------~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNT-----------NKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCH-----------HHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCH-----------HHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 78888888888 8888 56667777776653 67788888888888 888999999998888
Q ss_pred HCCCCCCHHhHHHHHHHHhc----cCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 043480 153 ENGIKPDNKACAALVVGLCG----DGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCR----TGRIRRAMAIKSFMKWN 224 (493)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 224 (493)
+.+ +..++..+...+.. .+++++|...|+...+.+ +...+..+...|.. .+++++|...|++..+.
T Consensus 142 ~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 142 DLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred hcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 765 55667777777776 788888888888877753 45666677777777 77888888888777766
Q ss_pred CCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHCC
Q 043480 225 GCEPDLVTYNAILNYYCD----EVMLDEAEKLVMEMESCG 260 (493)
Q Consensus 225 ~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 260 (493)
+ +...+..+...|.. .+++++|...++...+.+
T Consensus 216 ~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 216 E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 4 25556666666766 777777777777776654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.6e-15 Score=122.70 Aligned_cols=208 Identities=11% Similarity=-0.054 Sum_probs=153.7
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhH
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTY 82 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (493)
+..|.++.++..++..+...|++++|++.|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 79 (225)
T 2vq2_A 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEIN 79 (225)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHH
Confidence 4567788899999999999999999999999998875 6677888888999999999999999999988764 4566778
Q ss_pred HHHHHHHhcc-CChhhHHHHHHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 043480 83 SRFISGLCEV-KNFTLINILLDNMDKLALEVFHKMVSKGREP-DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN 160 (493)
Q Consensus 83 ~~ll~~~~~~-~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 160 (493)
..+..++... |++ +.|...++++...+..| +...+..+...+...|++++|++.|+++.+.. +.+.
T Consensus 80 ~~l~~~~~~~~~~~-----------~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 147 (225)
T 2vq2_A 80 NNYGWFLCGRLNRP-----------AESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFP 147 (225)
T ss_dssp HHHHHHHHTTTCCH-----------HHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHHHhcCcH-----------HHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCc
Confidence 8888888888 888 55666666666532222 35677778888888888888888888887653 2246
Q ss_pred HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043480 161 KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWN 224 (493)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (493)
..+..+...+...|++++|...++.+.......+...+..+...+...|+.+.+..+++.+...
T Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 148 PAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 6667777777777777777777777665431145555666666666777777777777666543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.69 E-value=9.3e-15 Score=124.58 Aligned_cols=201 Identities=11% Similarity=-0.051 Sum_probs=112.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISG 88 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 88 (493)
+.++..++..+...|++++|++.|+++.+.+ +.+...+..+..++...|++++|...++++.+.. +.+...+..+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556666666666666666666666666654 4455566666666666666666666666665543 3345555566666
Q ss_pred HhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 043480 89 LCEVKNFTLINILLDNMDKLALEVFHKMVSKGREP-DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALV 167 (493)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 167 (493)
+...|++ +.|++.++++...+..| +...+..+...+...|++++|.+.|++..+.. +.+..++..+.
T Consensus 115 ~~~~g~~-----------~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la 182 (252)
T 2ho1_A 115 LYEQKRY-----------EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMA 182 (252)
T ss_dssp HHHTTCH-----------HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred HHHHhHH-----------HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 6666666 44445555554421222 34455555566666666666666666655542 12344555555
Q ss_pred HHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043480 168 VGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWN 224 (493)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (493)
..+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 55555555555555555555432 233444445555555555555555555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-14 Score=125.01 Aligned_cols=229 Identities=12% Similarity=0.089 Sum_probs=113.5
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHHcC
Q 043480 237 LNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRD--KVSYNTVIEAFCKGG 314 (493)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~ 314 (493)
...+...|++++|...++.+.+.. +.+...+..+..++...|++++|+..+.+.......++ ...|..+...+...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 334444444555555444444432 12233444444455555555555555555444211111 112445555555555
Q ss_pred CHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHH
Q 043480 315 QTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFL 394 (493)
Q Consensus 315 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 394 (493)
++++|.+.|++..+... .+...+..+...+...|++++|...++...+.. +.+...+..+...+...+++++|...++
T Consensus 89 ~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554422 234455555555566666666666665555443 3444455555522222346666666666
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCC---hhHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 043480 395 DMVEQGITPDVISYNALINGLCKSSR---VSEAMHLYEEMQIRG-AHPD------EVTFKLLIGGLVQEKKLELACRLWD 464 (493)
Q Consensus 395 ~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~ 464 (493)
++++.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..+...|...|++++|.+.++
T Consensus 167 ~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 167 KVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 665542 2234455555555555555 555666665554321 0122 2455556666666666666666666
Q ss_pred HHHHc
Q 043480 465 QMMEK 469 (493)
Q Consensus 465 ~~~~~ 469 (493)
++++.
T Consensus 246 ~al~~ 250 (272)
T 3u4t_A 246 NILAL 250 (272)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.1e-15 Score=127.82 Aligned_cols=234 Identities=14% Similarity=0.018 Sum_probs=146.7
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChh----hHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPF----TYS 83 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~ 83 (493)
|+.++...+..+...|++++|++.|+++.+.+ |.+...+..+..++...|++++|+..++++.+.+ +++. +|.
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~ 78 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFE 78 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHH
Confidence 45566778888999999999999999998876 5667788888889999999999999999988742 3332 367
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhH
Q 043480 84 RFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKAC 163 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 163 (493)
.+..++...|++ +.|+..|++.... .+.+..++..+...|...|++++|++.|++..+.. +.+..++
T Consensus 79 ~lg~~~~~~~~~-----------~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~ 145 (272)
T 3u4t_A 79 YYGKILMKKGQD-----------SLAIQQYQAAVDR-DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVF 145 (272)
T ss_dssp HHHHHHHHTTCH-----------HHHHHHHHHHHHH-STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHH
T ss_pred HHHHHHHHcccH-----------HHHHHHHHHHHhc-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHH
Confidence 777888888888 5555666666554 23455677777778888888888888887777652 2244555
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHH
Q 043480 164 AALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGR---IRRAMAIKSFMKWNG-CEPD------LVTY 233 (493)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~ 233 (493)
..+...+...+++++|.+.|+.+.+.. +.+...+..+...+...++ +++|...+++..+.. -.|+ ...+
T Consensus 146 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 224 (272)
T 3u4t_A 146 YELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN 224 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 555523333346666666666666543 2234445555555555554 444555555444321 0111 1234
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHH
Q 043480 234 NAILNYYCDEVMLDEAEKLVMEMES 258 (493)
Q Consensus 234 ~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (493)
..+...|...|++++|...++++.+
T Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 225 EYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444455555555555555444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-13 Score=116.21 Aligned_cols=221 Identities=11% Similarity=-0.004 Sum_probs=111.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 043480 232 TYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCN----SNQLDKAYMFMVKKMEAKGLRDKVSYNTVI 307 (493)
Q Consensus 232 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 307 (493)
.+..+...+...|++++|...|+...+ +.+...+..+...|.. .+++++|...|.+....+ +...+..+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 333444444444444444444444444 1223334444444444 445555555554444432 344444444
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 043480 308 EAFCK----GGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLR----EGSSAMAEKLLNQMRGMNLSPDRILYTTIIDC 379 (493)
Q Consensus 308 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (493)
..|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 45554 555555555555555442 34445555555555 555555555555555433 33444445555
Q ss_pred HHc----cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043480 380 LCK----SREIGTAYGVFLDMVEQGITPDVISYNALINGLCK----SSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 380 ~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 451 (493)
|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+...|.
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 544 555666666666555542 33445555555555 566666666666655532 2445555555555
Q ss_pred h----cCCHHHHHHHHHHHHHcC
Q 043480 452 Q----EKKLELACRLWDQMMEKG 470 (493)
Q Consensus 452 ~----~g~~~~a~~~~~~~~~~~ 470 (493)
. .+++++|.+.+++..+.|
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHHcC
Confidence 5 566666666666665543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-15 Score=126.35 Aligned_cols=202 Identities=14% Similarity=0.100 Sum_probs=113.6
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
..+..|..++..+...|++++|+..|+++.+.+ +.+...+..++..+...|++++|+..++++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345566677777777777777777777777764 5566677777777777777777777777776653 34556666667
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAAL 166 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (493)
.++...|++ +.|++.++++.+. .+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+
T Consensus 99 ~~~~~~~~~-----------~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 165 (243)
T 2q7f_A 99 NVYVVKEMY-----------KEAKDMFEKALRA-GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQF 165 (243)
T ss_dssp HHHHHTTCH-----------HHHHHHHHHHHHH-TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHhccH-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 777777777 4445555555544 23355666666677777777777777777766542 2245555666
Q ss_pred HHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043480 167 VVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWN 224 (493)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (493)
...+...|++++|...++.+.... +.+..++..+...|...|++++|...++++.+.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666666666666666655543 234445555555666666666666666655544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-13 Score=118.10 Aligned_cols=199 Identities=12% Similarity=0.009 Sum_probs=120.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHH
Q 043480 267 SYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFL 346 (493)
Q Consensus 267 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (493)
.+..+...+...|++++|...+.++....+. +...+..+...+...|++++|.+.++++.+... .+...+..+...+.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHH
Confidence 3444444555555555555555555544322 444555555566666666666666666555432 24555666666666
Q ss_pred HcCCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 043480 347 REGSSAMAEKLLNQMRGMNL-SPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAM 425 (493)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 425 (493)
..|++++|...++.+.+.+. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666665211 2244556666666777777777777777766542 234566667777777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 426 HLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 426 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
..++++.+... .+...+..+...+...|++++|.+.++++.+.
T Consensus 196 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 196 QYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777765422 25666667777777777777777777777664
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-13 Score=115.62 Aligned_cols=212 Identities=9% Similarity=-0.039 Sum_probs=142.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHH
Q 043480 265 VYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKA 344 (493)
Q Consensus 265 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (493)
...+..+...+...|++++|...+.++....+. +...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 445555666666666666666666666665432 45566666677777777777777777776653 2355666777777
Q ss_pred HHHc-CCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChh
Q 043480 345 FLRE-GSSAMAEKLLNQMRGMNLSP-DRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVS 422 (493)
Q Consensus 345 ~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 422 (493)
+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+..++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 7777 77777777777777622122 35667777777777888888888888777652 334667777777888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043480 423 EAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAAL 481 (493)
Q Consensus 423 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 481 (493)
+|...++++.+.....+...+..+...+...|+.+.|..+++.+.+. .|+......+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~ 221 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 88888888766533135666777777777888888888888877654 3544444333
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-14 Score=125.81 Aligned_cols=245 Identities=10% Similarity=-0.064 Sum_probs=129.8
Q ss_pred CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHH
Q 043480 209 GRIRRAMAIKSFMKWNGC---EPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAY 285 (493)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 285 (493)
|++++|+..++++.+... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 445555555555554321 1123444555555555555555555555555432 234455555555666666666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 043480 286 MFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN 365 (493)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 365 (493)
..+.++....+. +...+..+...+...|++++|...++++.+.. |+.......+..+...|++++|...++......
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 666665554332 44555666666666666666666666666542 232233333334455566667766665555432
Q ss_pred CCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCC---CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 043480 366 LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGIT---PDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVT 442 (493)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 442 (493)
+++...+ .++..+...++.++|...+.+..+.... .+...+..+..+|...|++++|...|+++.+. .|+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN-- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--
Confidence 2333333 3455555666666666666666543110 01356666777777777777777777777664 2321
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 043480 443 FKLLIGGLVQEKKLELACRLW 463 (493)
Q Consensus 443 ~~~l~~~~~~~g~~~~a~~~~ 463 (493)
+.....++...|++++|.+.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 222344556666666666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=6.7e-15 Score=127.29 Aligned_cols=249 Identities=10% Similarity=-0.061 Sum_probs=157.9
Q ss_pred HHHcCChhHHHHHHHHHhhCCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCCh
Q 043480 19 LVKAGLIDQAVHVFDEMTQSNC---RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNF 95 (493)
Q Consensus 19 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 95 (493)
+...|++++|++.|+++.+... +.+..+|..++..+...|++++|...|+++.+.. +.+..++..+..++...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 3445788888888888887531 2345677778888888888888888888888764 45677788888888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCc
Q 043480 96 TLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGK 175 (493)
Q Consensus 96 ~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (493)
+.|+..|++.... .+.+..++..+...+...|++++|.+.|+++.+. .|+.......+..+...|+
T Consensus 94 -----------~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~ 159 (275)
T 1xnf_A 94 -----------DAAYEAFDSVLEL-DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLD 159 (275)
T ss_dssp -----------HHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHC
T ss_pred -----------HHHHHHHHHHHhc-CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcC
Confidence 5555666666654 3345677888888888888888888888888775 3444444444444456677
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCChHHHHHH
Q 043480 176 VDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCE---PDLVTYNAILNYYCDEVMLDEAEKL 252 (493)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~ 252 (493)
+++|...+....... +++...+ .++..+...++.++|...+++....... .+...+..+...+...|++++|...
T Consensus 160 ~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 237 (275)
T 1xnf_A 160 EKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237 (275)
T ss_dssp HHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777776666543 2233333 3555666666777777777766543210 0134555666666666666666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 043480 253 VMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFM 288 (493)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 288 (493)
++.+.+.. |+. +.....++...|++++|+..+
T Consensus 238 ~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 238 FKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 66666532 221 122233444455555554443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-13 Score=122.64 Aligned_cols=227 Identities=8% Similarity=0.027 Sum_probs=107.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 043480 233 YNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQ-LDKAYMFMVKKMEAKGLRDKVSYNTVIEAFC 311 (493)
Q Consensus 233 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (493)
|..+...+...|++++|+..++.+.+.. +.+...|..+..++...|+ +++|+..|.+++...+. +...|..+..++.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 3333344444444444444444444432 2233444444444444443 55555555555444332 4444555555555
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc-cCCHhHH-
Q 043480 312 KGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK-SREIGTA- 389 (493)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a- 389 (493)
..|++++|+..|+++.+.... +...|..+..++...|++++|+..++.+.+.. +.+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence 555555555555555544222 44445555555555555555555555555443 3344555555555554 3333444
Q ss_pred ----HHHHHHHHhCCCCCCHhhHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--------C
Q 043480 390 ----YGVFLDMVEQGITPDVISYNALINGLCKSS--RVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEK--------K 455 (493)
Q Consensus 390 ----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------~ 455 (493)
+..+++.++.. +-+...|..+...+...| ++++|++.++++ +. -..+...+..++.+|.+.| +
T Consensus 256 ~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 256 LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 34555555431 223445555555555544 455555555554 21 1114555555555555542 1
Q ss_pred -HHHHHHHHHHH
Q 043480 456 -LELACRLWDQM 466 (493)
Q Consensus 456 -~~~a~~~~~~~ 466 (493)
+++|.++++++
T Consensus 333 ~~~~A~~~~~~l 344 (382)
T 2h6f_A 333 ILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 35555555555
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.5e-14 Score=119.54 Aligned_cols=192 Identities=15% Similarity=0.146 Sum_probs=70.6
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH
Q 043480 237 LNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQT 316 (493)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 316 (493)
...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+.++....+. +...+..+...+...|++
T Consensus 30 a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 107 (243)
T 2q7f_A 30 MGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYVVKEMY 107 (243)
T ss_dssp ------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHhccH
Confidence 333334444444444444443321 122333333334444444444444444443333221 333333344444444444
Q ss_pred HHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHH
Q 043480 317 RRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDM 396 (493)
Q Consensus 317 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 396 (493)
++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++
T Consensus 108 ~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 108 KEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444443332 1133333344444444444444444444443322 223333444444444444444444444444
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 397 VEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 397 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
.+.. +.+..++..+..++...|++++|...++++.+
T Consensus 186 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 186 TEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 3321 12233344444444444444444444444433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-14 Score=133.51 Aligned_cols=246 Identities=13% Similarity=0.021 Sum_probs=158.2
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHhccC----CCC
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF----SIDYNRFIGVLIRHSRFDLVQFYYQQMHPL----GFS 76 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~ 76 (493)
.+.....+......+...|++++|+..|+++.+.+ +.+ ...|..+...+...|++++|...++++... +..
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 34556677888999999999999999999999875 444 356888889999999999999999987653 111
Q ss_pred -cChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC---------------
Q 043480 77 -LTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKE--------------- 140 (493)
Q Consensus 77 -~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~--------------- 140 (493)
....++..+...+...|+++.|...++ +++++...... ......++..+...|...|+
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~----~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 157 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQ----RHLDISRELND--KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE 157 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHHHHhccc--ccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence 224577888899999999987776663 33333333310 11124578888889999999
Q ss_pred -----HHHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHhccCchhHHHHHHHHHHhCCC-----CCChhhHHHHHHHH
Q 043480 141 -----FDKAVQAWEHMIEN----GIKP-DNKACAALVVGLCGDGKVDLAYELTVGAMKGKV-----EFGVLIYNALISGF 205 (493)
Q Consensus 141 -----~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~ 205 (493)
+++|++.+++.... +..| ...++..+...+...|++++|...+++..+... .....++..+...|
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 88888888776542 1111 124566666677777777777777766654210 00122555566666
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHHHHH
Q 043480 206 CRTGRIRRAMAIKSFMKWNGC-EPD----LVTYNAILNYYCDEVMLDEAEKLVMEME 257 (493)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 257 (493)
...|++++|...+++...... .++ ..++..+...+...|++++|...++...
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 666666666666665543210 001 2344445555555555555555555543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-14 Score=133.66 Aligned_cols=244 Identities=13% Similarity=0.027 Sum_probs=155.1
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHhccC----C-CCc
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS----IDYNRFIGVLIRHSRFDLVQFYYQQMHPL----G-FSL 77 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~ 77 (493)
.....+..+...+...|++++|+..|+++.+.+ +.+. ..|..+...+...|++++|...++++++. + .+.
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 344556678889999999999999999999875 4444 46888899999999999999999988764 1 123
Q ss_pred ChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC-----------------
Q 043480 78 TPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKE----------------- 140 (493)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~----------------- 140 (493)
...++..+...+...|+++.|...+++ +++++..... .+....++..+...|...|+
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~----al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCER----HLTLARQLGD--RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH----HHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHH----HHHHHHHhhc--hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 456788888999999999888777643 3344433310 12235578888899999999
Q ss_pred HHHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCC-----CChhhHHHHHHHHHhcCC
Q 043480 141 FDKAVQAWEHMIEN----GIKP-DNKACAALVVGLCGDGKVDLAYELTVGAMKGKVE-----FGVLIYNALISGFCRTGR 210 (493)
Q Consensus 141 ~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~ 210 (493)
+++|++.+++..+. +..+ ...++..+...+...|++++|...+++..+.... ....++..+...|...|+
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 88888888776542 1111 1235566666667777777777776666542100 011245555556666666
Q ss_pred HHHHHHHHHHHHHCCC---C--CCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 043480 211 IRRAMAIKSFMKWNGC---E--PDLVTYNAILNYYCDEVMLDEAEKLVMEME 257 (493)
Q Consensus 211 ~~~a~~~~~~~~~~~~---~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 257 (493)
+++|...+++...... . ....++..+...+...|++++|...+++..
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666555543210 0 012334444444555555555555554443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-14 Score=128.84 Aligned_cols=121 Identities=13% Similarity=-0.018 Sum_probs=66.7
Q ss_pred CHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-C
Q 043480 159 DNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFG----VLIYNALISGFCRTGRIRRAMAIKSFMKWN----GCEP-D 229 (493)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 229 (493)
....+......+...|++++|...|+++.+.. +.+ ..++..+...+...|++++|...+++.... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 44455566666677777777777777766643 112 245566666677777777777776665432 1111 1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHccCC
Q 043480 230 LVTYNAILNYYCDEVMLDEAEKLVMEMESCGI-EPD----VYSYNQLLKGLCNSNQ 280 (493)
Q Consensus 230 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~ 280 (493)
...+..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 33455555666666666666666666543210 011 2244455555555555
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-13 Score=111.40 Aligned_cols=169 Identities=14% Similarity=0.083 Sum_probs=137.2
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
+.++.+|..+...|.+.|++++|++.|+++++.+ |.++.+|..+..++.+.|++++|...+....... +.+...+..+
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 79 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYIL 79 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHH
Confidence 5678899999999999999999999999999987 7788889999999999999999999999987764 4556677777
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 043480 86 ISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAA 165 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (493)
...+...+++ +.+...+.+.... .+.+...+..+...+.+.|++++|++.|++..+.. +.+..++..
T Consensus 80 ~~~~~~~~~~-----------~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~ 146 (184)
T 3vtx_A 80 GSANFMIDEK-----------QAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQS 146 (184)
T ss_dssp HHHHHHTTCH-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHcCCH-----------HHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHH
Confidence 7888888888 5555666666654 34567788888888999999999999999888763 335677788
Q ss_pred HHHHHhccCchhHHHHHHHHHHhC
Q 043480 166 LVVGLCGDGKVDLAYELTVGAMKG 189 (493)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~ 189 (493)
+..++...|++++|.+.|++.++.
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhC
Confidence 888888888888888888887764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-14 Score=126.22 Aligned_cols=207 Identities=14% Similarity=0.035 Sum_probs=134.7
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHhccC----CC-CcC
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF----SIDYNRFIGVLIRHSRFDLVQFYYQQMHPL----GF-SLT 78 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~ 78 (493)
+...+......+...|++++|+..|+++.+.+ +.+ ...+..+...+...|++++|...+++.... +. +..
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 34456677889999999999999999999875 444 356788889999999999999999987653 11 123
Q ss_pred hhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHhccCC-----------------
Q 043480 79 PFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGRE-PDVVTYTIVIDGLCKAKE----------------- 140 (493)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~~~----------------- 140 (493)
..++..+...+...|+++.|...+++ ++++.... +.+ ....++..+...+...|+
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~----al~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQR----HLDISREL---NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH----HHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH----HHHHHHHh---cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 56778888999999999777765533 33333222 111 124477888888999999
Q ss_pred ---HHHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHhccCchhHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHh
Q 043480 141 ---FDKAVQAWEHMIEN----GIKP-DNKACAALVVGLCGDGKVDLAYELTVGAMKGKV-----EFGVLIYNALISGFCR 207 (493)
Q Consensus 141 ---~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~ 207 (493)
+++|.+.+++.... +..+ ...++..+...+...|++++|...+++..+... .....++..+...+..
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 235 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 88888888776532 1111 123455566666666777777666666553210 0011244455555555
Q ss_pred cCCHHHHHHHHHHHH
Q 043480 208 TGRIRRAMAIKSFMK 222 (493)
Q Consensus 208 ~~~~~~a~~~~~~~~ 222 (493)
.|++++|...+++..
T Consensus 236 ~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 236 LGEFETASEYYKKTL 250 (338)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.7e-14 Score=129.71 Aligned_cols=203 Identities=12% Similarity=0.029 Sum_probs=126.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHHcCC-----------------HHHHHHHHH
Q 043480 267 SYNQLLKGLCNSNQLDKAYMFMVKKMEAKG-----LRDKVSYNTVIEAFCKGGQ-----------------TRRAYKLFE 324 (493)
Q Consensus 267 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 324 (493)
.+..+...|...|++++|...+.+...... ......+..+...+...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 334444444455555555554444433210 0122345555555556666 666666665
Q ss_pred HHHHc----CC-CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHhHHHHHHHHHccCCHhHHHHHHH
Q 043480 325 GMRRR----GI-ELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNL-SPD----RILYTTIIDCLCKSREIGTAYGVFL 394 (493)
Q Consensus 325 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 394 (493)
+..+. +. ......+..+...+...|++++|...+++..+... .++ ...+..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 54331 11 11234666777778888888888888877764210 011 2367778888888899999988888
Q ss_pred HHHhCCC--C---CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043480 395 DMVEQGI--T---PDVISYNALINGLCKSSRVSEAMHLYEEMQIR----GAHP-DEVTFKLLIGGLVQEKKLELACRLWD 464 (493)
Q Consensus 395 ~~~~~~~--~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 464 (493)
+..+... . ....++..+...+...|++++|...+++.... +..+ ...++..+..+|...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8775310 0 11456777888888999999999998887542 1111 24577788889999999999999999
Q ss_pred HHHHc
Q 043480 465 QMMEK 469 (493)
Q Consensus 465 ~~~~~ 469 (493)
++.+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88865
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-12 Score=114.15 Aligned_cols=237 Identities=8% Similarity=0.004 Sum_probs=127.8
Q ss_pred CcchhhHHHHHHHHHHc----CCh----hHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-------cCCh-------hHH
Q 043480 6 GAQRLIYRAQISNLVKA----GLI----DQAVHVFDEMTQSNCRVFSIDYNRFIGVLIR-------HSRF-------DLV 63 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a 63 (493)
+.+...|...+..-.+. ++. ++|+.+|++++... |.++..|..++..+.. .|++ ++|
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A 83 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 83 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHH
Confidence 34556677777765443 233 67788888888765 6777788887777653 4665 677
Q ss_pred HHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCC-Hh-hHHHHHHHHhccCCH
Q 043480 64 QFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPD-VV-TYTIVIDGLCKAKEF 141 (493)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~-~~-~~~~l~~~~~~~~~~ 141 (493)
..+|++.++.-.+.+...|..++..+...|++ +.|..+|++.++. +|+ .. .|..++..+.+.|++
T Consensus 84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~-----------~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~ 150 (308)
T 2ond_A 84 ANIYERAISTLLKKNMLLYFAYADYEESRMKY-----------EKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGI 150 (308)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH-----------HHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCH
Confidence 77777776621133445666666666666666 4555666666553 332 32 566666666666667
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHh-ccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043480 142 DKAVQAWEHMIENGIKPDNKACAALVVGLC-GDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSF 220 (493)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 220 (493)
++|..+|++..+.. +++...+........ ..|+.+.|..+|+..++.. +.+...|..++..+.+.|+.++|..+|++
T Consensus 151 ~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 151 KSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp HHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77766666666542 122223322222211 2355555555555554432 22344444445555555555555555555
Q ss_pred HHHCC-CCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 043480 221 MKWNG-CEP--DLVTYNAILNYYCDEVMLDEAEKLVMEMES 258 (493)
Q Consensus 221 ~~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (493)
..... ++| ....|..++......|+.+.|..+++++.+
T Consensus 229 al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 229 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54431 222 233444444444444555555555444443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-12 Score=110.95 Aligned_cols=183 Identities=11% Similarity=0.040 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-Hh-HHHHHHHHHHHcCCHHHHHHHHH
Q 043480 282 DKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELD-VV-TFTILIKAFLREGSSAMAEKLLN 359 (493)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~ 359 (493)
++|...|++.+..-.+.+...|..++..+...|++++|.++|++..+. .|+ .. .|..++..+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 444444444444211123334444444444445555555555554443 121 21 44444444444555555555555
Q ss_pred HHHhCCCCCCHHhHHHHHHHHH-ccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CC
Q 043480 360 QMRGMNLSPDRILYTTIIDCLC-KSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRG-AH 437 (493)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~ 437 (493)
+..+.. +++...|........ ..|++++|..+|++.++.. +-+...|..++..+...|++++|..+|++..... +.
T Consensus 159 ~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 554432 222233322222211 1355555555555554431 2234444555555555555555555555554431 22
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 438 P--DEVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 438 p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
| +...|..++..+.+.|+.+.|..+++++.+
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 244455555555555555555555555544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.5e-14 Score=125.14 Aligned_cols=181 Identities=12% Similarity=0.061 Sum_probs=137.1
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhC-------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC---
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQS-------NCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL--- 73 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 73 (493)
..|.+..++..++..|...|++++|+.+|+++.+. +.+.....+..+...+...|++++|...+++++..
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35667788999999999999999999999998873 33555677888999999999999999999998764
Q ss_pred ---C-CCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 043480 74 ---G-FSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWE 149 (493)
Q Consensus 74 ---~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 149 (493)
+ .+....++..+...+...|+++.|...++ ++++..+.......+.....+..+...+...|++++|++.|+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~----~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK----RALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH----HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHH----HHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 13345678889999999999987776664 334444433222223345678888999999999999999999
Q ss_pred HHHHC------CCCC-CHHhHHHHHHHHhccCchhHHHHHHHHHHh
Q 043480 150 HMIEN------GIKP-DNKACAALVVGLCGDGKVDLAYELTVGAMK 188 (493)
Q Consensus 150 ~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (493)
+..+. +..| ...++..+...+...|++++|...++++.+
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 98764 1122 235667777788888888888888877764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-13 Score=122.87 Aligned_cols=266 Identities=14% Similarity=0.053 Sum_probs=156.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCC-CChhhHHHHHH
Q 043480 203 SGFCRTGRIRRAMAIKSFMKWNGCEPD----LVTYNAILNYYCDEVMLDEAEKLVMEMESC----GIE-PDVYSYNQLLK 273 (493)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~ 273 (493)
..+...|++++|...++++.+.. +.+ ...+..+...+...|++++|...++...+. +.. .....+..+..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 33444444444444444444332 111 123334444444455555555444443221 100 11233444555
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH
Q 043480 274 GLCNSNQLDKAYMFMVKKMEAKGL-RD----KVSYNTVIEAFCKGGQ--------------------TRRAYKLFEGMRR 328 (493)
Q Consensus 274 ~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~ 328 (493)
.+...|++++|...+.+....... .+ ..++..+...+...|+ +++|.+.+++...
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 555555555555555554432111 11 2245555566666666 6666666665543
Q ss_pred c----CC-CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----C-CCCHHhHHHHHHHHHccCCHhHHHHHHHHHHh
Q 043480 329 R----GI-ELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN----L-SPDRILYTTIIDCLCKSREIGTAYGVFLDMVE 398 (493)
Q Consensus 329 ~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 398 (493)
. +. ......+..+...+...|++++|...++...+.. . .....++..+...+...|++++|...+++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 11 1123456777778888889888888888776421 0 11123777888888899999999999988774
Q ss_pred C----CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 399 Q----GITP-DVISYNALINGLCKSSRVSEAMHLYEEMQIR----GAHP-DEVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 399 ~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
. +..+ ...++..+...+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...++++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3 1111 1456778888899999999999999887542 1111 255778889999999999999999999987
Q ss_pred c
Q 043480 469 K 469 (493)
Q Consensus 469 ~ 469 (493)
.
T Consensus 332 ~ 332 (338)
T 3ro2_A 332 I 332 (338)
T ss_dssp C
T ss_pred H
Confidence 5
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-12 Score=104.03 Aligned_cols=167 Identities=13% Similarity=0.066 Sum_probs=110.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 043480 299 DKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIID 378 (493)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 378 (493)
+...|..+...+...|++++|++.|++..+..+. +...+..+..++...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4455666666666667777777777766665322 55666666667777777777777776666544 445556666666
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043480 379 CLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLEL 458 (493)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 458 (493)
.+...++++.|...+.+..+.. +.+...+..+..++...|++++|++.|++..+..+. +..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 6677777777777777766542 334566667777777777777777777777664322 56777777777777777777
Q ss_pred HHHHHHHHHHc
Q 043480 459 ACRLWDQMMEK 469 (493)
Q Consensus 459 a~~~~~~~~~~ 469 (493)
|.+.++++++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777777653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-12 Score=118.63 Aligned_cols=230 Identities=12% Similarity=-0.061 Sum_probs=149.4
Q ss_pred HHHHHccCChHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC------ChhhHHH
Q 043480 237 LNYYCDEVMLDEAEKLVMEMESC----GIEP-DVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR------DKVSYNT 305 (493)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~ 305 (493)
...+...|++++|...+++..+. +.++ ...++..+...|...|+++.|...+.+........ ...+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34455566666666666666542 1011 12455566666666777777777666665532111 1235666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC----C-cCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHhHHH
Q 043480 306 VIEAFCKGGQTRRAYKLFEGMRRRGI----E-LDVVTFTILIKAFLREGSSAMAEKLLNQMRGM----NL-SPDRILYTT 375 (493)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 375 (493)
+...|...|++++|.+.+++..+... . ....++..+...|...|++++|...+++..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 77777778888888887777654311 0 11236777888888888888888888877651 22 334567788
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhC----CCCCCHhhHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 043480 376 IIDCLCKSREIGTAYGVFLDMVEQ----GITPDVISYNALINGLCKSSR---VSEAMHLYEEMQIRGAHP-DEVTFKLLI 447 (493)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~~~l~ 447 (493)
+...+...|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++. +..| ....+..+.
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 888888888988888888887643 111112335667777788888 66777777665 2223 355677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 043480 448 GGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
..|...|++++|...++++.+.
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 8999999999999999888764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-12 Score=116.15 Aligned_cols=294 Identities=6% Similarity=-0.108 Sum_probs=206.5
Q ss_pred HhccCCHHHHHHHHHHHHHC--CCCCCH--HhHHHHHHH--HhccCchhHHH-----------HHHHHHHhCCCCCChhh
Q 043480 135 LCKAKEFDKAVQAWEHMIEN--GIKPDN--KACAALVVG--LCGDGKVDLAY-----------ELTVGAMKGKVEFGVLI 197 (493)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 197 (493)
+.+.+++++|..+++++.+. .+..|. ..|..++.. ....+.++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 45689999999999988653 232333 333333322 12233344444 6666654321 11111
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC--CC--
Q 043480 198 ------YNALISGFCRTGRIRRAMAIKSFMKWN----GCEP-DLVTYNAILNYYCDEVMLDEAEKLVMEMESCG--IE-- 262 (493)
Q Consensus 198 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~-- 262 (493)
+......+...|++++|...+++.... +-.+ ...++..+...+...|++++|...+++..+.. ..
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222556778899999999999998764 1111 24578888899999999999999999876431 11
Q ss_pred --CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-C----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC
Q 043480 263 --PDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR-D----KVSYNTVIEAFCKGGQTRRAYKLFEGMRRR----GI 331 (493)
Q Consensus 263 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 331 (493)
....++..+...|...|++++|...+.+........ + ..++..+...|...|++++|.+.+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 123467788899999999999999999887642211 1 236888999999999999999999998762 23
Q ss_pred -CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHhHHHHHHHHHccCC---HhHHHHHHHHHHhCCCCC
Q 043480 332 -ELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM----NLSPDRILYTTIIDCLCKSRE---IGTAYGVFLDMVEQGITP 403 (493)
Q Consensus 332 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p 403 (493)
+....++..+...+...|++++|...++...+. +-+.....+..+...+...|+ +++|..++++. +..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 334667888999999999999999999987653 112223345678888888998 77777777665 2233
Q ss_pred -CHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 404 -DVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 404 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
....+..+...|...|++++|...+++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345677889999999999999999999854
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-12 Score=122.37 Aligned_cols=214 Identities=10% Similarity=-0.020 Sum_probs=151.9
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 043480 246 LDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQL-DKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFE 324 (493)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 324 (493)
++++...++...... +.+...+..+...+...|++ ++|+..|.++....+. +...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344455555444322 23556666666777777777 7777777777665443 56667777777777777777777777
Q ss_pred HHHHcCCCcCHhHHHHHHHHHHHc---------CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc--------CCHh
Q 043480 325 GMRRRGIELDVVTFTILIKAFLRE---------GSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKS--------REIG 387 (493)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 387 (493)
+..+.. |+...+..+...+... |++++|...+++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 777653 4556777777777777 88888888888877754 55677778888888777 8888
Q ss_pred HHHHHHHHHHhCCCC---CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043480 388 TAYGVFLDMVEQGIT---PDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWD 464 (493)
Q Consensus 388 ~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 464 (493)
+|...|++.++.. + .+...|..+..+|...|++++|...|++..+.... +...+..+..++...|++++|.+.+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888752 2 36777888888888888888888888888775322 57778888888888888888876554
Q ss_pred HH
Q 043480 465 QM 466 (493)
Q Consensus 465 ~~ 466 (493)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=6e-13 Score=123.92 Aligned_cols=212 Identities=8% Similarity=-0.110 Sum_probs=174.6
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHH
Q 043480 25 IDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRF-DLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLD 103 (493)
Q Consensus 25 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 103 (493)
+++|++.+++..... +.+...+..+..++...|++ ++|+..|++.++.. +.+..+|..+..++...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~-------- 153 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDV-------- 153 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH--------
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCH--------
Confidence 566777777776654 66788899999999999999 99999999998875 45678999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc---------CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcc-
Q 043480 104 NMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKA---------KEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGD- 173 (493)
Q Consensus 104 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 173 (493)
++|++.|++..+. .|+...+..+...+... |++++|++.|++..+.. +.+...+..+..++...
T Consensus 154 ---~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~ 227 (474)
T 4abn_A 154 ---TSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLY 227 (474)
T ss_dssp ---HHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 6777888888874 56678899999999999 99999999999998864 33578888888888888
Q ss_pred -------CchhHHHHHHHHHHhCCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 043480 174 -------GKVDLAYELTVGAMKGKVE---FGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDE 243 (493)
Q Consensus 174 -------~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 243 (493)
|++++|...|++..+.. + .+...|..+..+|...|++++|...|++..+.. +.+...+..+...+...
T Consensus 228 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 228 FNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFL 305 (474)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Confidence 88999999999888754 3 477788888888889999999999988887764 45666777777778777
Q ss_pred CChHHHHHHHH
Q 043480 244 VMLDEAEKLVM 254 (493)
Q Consensus 244 ~~~~~a~~~~~ 254 (493)
|++++|...+.
T Consensus 306 g~~~eAi~~~~ 316 (474)
T 4abn_A 306 SRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 87777776543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=119.94 Aligned_cols=179 Identities=13% Similarity=0.031 Sum_probs=134.3
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhccC-------CCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHH
Q 043480 41 RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL-------GFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVF 113 (493)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~ 113 (493)
+....++..+...+...|++++|..+++++.+. ..+....++..+..++...|+++.|...++ .+++.+
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~----~al~~~ 99 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLN----DALAIR 99 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH----HHHHHH
Confidence 445667888999999999999999999999873 224456778889999999999988877763 444444
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC------CCCC-CHHhHHHHHHHHhccCchhHHHHHHHHH
Q 043480 114 HKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN------GIKP-DNKACAALVVGLCGDGKVDLAYELTVGA 186 (493)
Q Consensus 114 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 186 (493)
+.......+....++..+...|...|++++|.+.|++..+. +..| ...++..+...+...|++++|.+.++++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44432222334668888999999999999999999998764 2122 3456777888888899999999888887
Q ss_pred HhC------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 187 MKG------K-VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKW 223 (493)
Q Consensus 187 ~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 223 (493)
... + .+....++..+...|...|++++|...++++..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 763 1 122345677788888888888888888888764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-12 Score=123.52 Aligned_cols=170 Identities=11% Similarity=0.053 Sum_probs=148.9
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
..|.++.+|+.|...|.+.|++++|++.|+++++.+ |.+...|+.+..+|.+.|++++|+..|++.++.. +.+..+|.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~ 81 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYS 81 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 457889999999999999999999999999999986 7778899999999999999999999999999875 45678999
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhH
Q 043480 84 RFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKAC 163 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 163 (493)
.+..++...|++ ++|++.|++.++. .+-+..+|+.+..+|...|++++|++.|++.++.. +-+...+
T Consensus 82 nLg~~l~~~g~~-----------~~A~~~~~kAl~l-~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~ 148 (723)
T 4gyw_A 82 NMGNTLKEMQDV-----------QGALQCYTRAIQI-NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAY 148 (723)
T ss_dssp HHHHHHHHTTCH-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred HHHHHHHHcCCH-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 999999999999 5666777777765 34467899999999999999999999999999863 2357889
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHh
Q 043480 164 AALVVGLCGDGKVDLAYELTVGAMK 188 (493)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~ 188 (493)
..+..++...|++++|.+.++++.+
T Consensus 149 ~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 149 CNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhhhhHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999998888764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.44 E-value=7.7e-11 Score=106.61 Aligned_cols=276 Identities=12% Similarity=-0.035 Sum_probs=164.1
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChh----hHHHHHHHHHhcCChhHHHHHHHHhccCCC-CcC----hh
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSI----DYNRFIGVLIRHSRFDLVQFYYQQMHPLGF-SLT----PF 80 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~ 80 (493)
.+.......+...|++++|+..+++........+.. .++.+...+...|++++|...+++...... ..+ ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 345566778889999999999999988865223222 456677888899999999999999876421 112 23
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCC--C-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 043480 81 TYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGRE--P-DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIK 157 (493)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (493)
++..+...+...|+++.|...+++ +++.... .+.+ | ....+..+...+...|++++|.+.+++.......
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~----al~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEK----AFQLINE---QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH----HHHHHHH---TTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH----HHHHHHH---hccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 356677888899999877765532 3333332 2222 2 3446677888899999999999999998754211
Q ss_pred --C--CHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043480 158 --P--DNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGV-LIYN-----ALISGFCRTGRIRRAMAIKSFMKWNGCE 227 (493)
Q Consensus 158 --~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (493)
+ ...++..+...+...|++++|...++........++. ..+. ..+..+...|++++|...+++.......
T Consensus 168 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 247 (373)
T 1hz4_A 168 YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 247 (373)
T ss_dssp SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT
T ss_pred cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCC
Confidence 1 1245566667777777777777777776542111111 1111 1223355677777777777666543211
Q ss_pred C---CHHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHHH
Q 043480 228 P---DLVTYNAILNYYCDEVMLDEAEKLVMEMESC----GIEPDV-YSYNQLLKGLCNSNQLDKAYMFMVKKM 292 (493)
Q Consensus 228 ~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 292 (493)
+ ....+..+...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+.+..
T Consensus 248 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 248 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1 1123444555566666666666666655321 111111 133333444445555555555544443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-11 Score=99.87 Aligned_cols=166 Identities=13% Similarity=0.072 Sum_probs=111.9
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
....+..++..+...|++++|++.|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34566677777888888888888888777664 5566777777777788888888888887777653 445666677777
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALV 167 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 167 (493)
.+...|++ +.|.+.++++... .+.+...+..+...+...|++++|.+.+++..+.. +.+..++..+.
T Consensus 85 ~~~~~~~~-----------~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 151 (186)
T 3as5_A 85 TYVQVQKY-----------DLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIA 151 (186)
T ss_dssp HHHHHTCH-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHhcCH-----------HHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHH
Confidence 77777777 4455555555544 33456666667777777777777777777776543 22455666666
Q ss_pred HHHhccCchhHHHHHHHHHHh
Q 043480 168 VGLCGDGKVDLAYELTVGAMK 188 (493)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~ 188 (493)
..+...|++++|...++.+.+
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 152 FSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-10 Score=103.64 Aligned_cols=297 Identities=14% Similarity=0.031 Sum_probs=167.4
Q ss_pred HHHHHHhccCchhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHH
Q 043480 165 ALVVGLCGDGKVDLAYELTVGAMKGKVEFGV----LIYNALISGFCRTGRIRRAMAIKSFMKWNGC-EPDL----VTYNA 235 (493)
Q Consensus 165 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ 235 (493)
.....+...|++++|...++.........+. .+++.+...+...|++++|...+++...... .++. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3444556678888888888877765422222 1445566677777888888887777654210 1121 22445
Q ss_pred HHHHHHccCChHHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----hhhHH
Q 043480 236 ILNYYCDEVMLDEAEKLVMEMESC----GIE--P-DVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRD----KVSYN 304 (493)
Q Consensus 236 ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~ 304 (493)
+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+.+......... ...+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 566677778888887777776532 211 1 123445566677777777777777777766433211 23455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH-hHHH-----HHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHhHHH
Q 043480 305 TVIEAFCKGGQTRRAYKLFEGMRRRGIELDV-VTFT-----ILIKAFLREGSSAMAEKLLNQMRGMNLSP---DRILYTT 375 (493)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ 375 (493)
.+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+ ....+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 6666677777777777777776543111111 1111 12233556777777777777666532111 1224455
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhC----CCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 376 IIDCLCKSREIGTAYGVFLDMVEQ----GITPDV-ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGL 450 (493)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 450 (493)
+...+...|++++|...+++..+. |..++. ..+..+..++...|+.++|...+++..... +. ......+
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~~~ 332 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFISHF 332 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHHHH
Confidence 666677777777777777766532 211122 244555666667777777777777765421 00 1122333
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 043480 451 VQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~ 469 (493)
...| +....+++.+...
T Consensus 333 ~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 333 VIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HTTH--HHHHHHHHHHHHT
T ss_pred HHcc--HHHHHHHHHHHhC
Confidence 4444 5556666666654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-10 Score=105.87 Aligned_cols=163 Identities=10% Similarity=0.095 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-cCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHH
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRR----GIE-LDVVTFTILIKAFLREGSSAMAEKLLNQMRG-----MNLSPDRI 371 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 371 (493)
+++.+...|...|++++|.+.+++..+. +.+ ....++..+...|...|++++|...++...+ .. +....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence 3444555555555555555555554431 111 1123455566666666666666666666554 22 23355
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCC----CCCCHhhHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCC-CHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQG----ITPDVISYNALINGLCKSSR---VSEAMHLYEEMQIRGAHP-DEVTF 443 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~ 443 (493)
++..+...+.+.|++++|...+++..+.. -+.....+..+...+...|+ +.+|+..+++. +..| ....+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHH
Confidence 66666666777777777777776666421 11112334444455555666 55565555552 1222 24455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 444 KLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 444 ~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
..+...|...|++++|...++++.+
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6677777777777777777777665
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-11 Score=101.60 Aligned_cols=208 Identities=10% Similarity=-0.010 Sum_probs=157.0
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
.+.|+..+..+...+.+.|++++|+..|+++.+.+++++...+..+..++...|++++|+..|++.++.. +.+..++..
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 81 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIG 81 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHH
Confidence 4567889999999999999999999999999998743788888889999999999999999999999875 446678899
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDV-------VTYTIVIDGLCKAKEFDKAVQAWEHMIENGIK 157 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (493)
+..++...|++ +.|+..+++.... .+.+. ..|..+...+...|++++|++.|++..+. .
T Consensus 82 l~~~~~~~~~~-----------~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~ 147 (228)
T 4i17_A 82 KSAAYRDMKNN-----------QEYIATLTEGIKA-VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--T 147 (228)
T ss_dssp HHHHHHHTTCH-----------HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--S
T ss_pred HHHHHHHcccH-----------HHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--C
Confidence 99999999999 6667777777764 23344 45888888999999999999999999986 4
Q ss_pred CC---HHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043480 158 PD---NKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYN 234 (493)
Q Consensus 158 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (493)
|+ ..++..+..++...|+ ..++.+.... ..+...|.... ....+.+++|+..+++..+.. +.+..+..
T Consensus 148 p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~ 218 (228)
T 4i17_A 148 SKKWKTDALYSLGVLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQ 218 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 54 4677777777765543 3344444332 22333343332 334566899999999998764 33444444
Q ss_pred HH
Q 043480 235 AI 236 (493)
Q Consensus 235 ~l 236 (493)
.+
T Consensus 219 ~l 220 (228)
T 4i17_A 219 MQ 220 (228)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.9e-11 Score=106.33 Aligned_cols=309 Identities=9% Similarity=-0.039 Sum_probs=214.9
Q ss_pred CCCCHhhHHHHHHHH--hccCCHHHHHHHHHHHHHC--CCCCCH--HhHHHHHHH--HhccCchhHHH---------HHH
Q 043480 121 REPDVVTYTIVIDGL--CKAKEFDKAVQAWEHMIEN--GIKPDN--KACAALVVG--LCGDGKVDLAY---------ELT 183 (493)
Q Consensus 121 ~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~--~~~~~~~~~a~---------~~~ 183 (493)
.-|+..+-+.+-..| ...+++++|.++++++... .+..|. ..|..++.. ....+.+..+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 445666666677777 8899999999999988653 222233 333333322 12234444444 666
Q ss_pred HHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHH
Q 043480 184 VGAMKGKVEFGV----LIYNALISGFCRTGRIRRAMAIKSFMKWNGC-EPD----LVTYNAILNYYCDEVMLDEAEKLVM 254 (493)
Q Consensus 184 ~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~ 254 (493)
+.+.....+.+. ..+......+...|++++|+..|++...... .++ ..++..+...|...|+++.|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 665442211111 1222344566789999999999999876421 122 4567788889999999999999999
Q ss_pred HHHHCC--CC---C-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHHcCCHHHHHHHH
Q 043480 255 EMESCG--IE---P-DVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGL-R----DKVSYNTVIEAFCKGGQTRRAYKLF 323 (493)
Q Consensus 255 ~~~~~~--~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~ 323 (493)
+..+.. .. + ...++..+...|...|++++|...+.+....... + ...++..+..+|...|++++|.+.+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 876431 11 1 2446778889999999999999999998764211 1 2346778889999999999999999
Q ss_pred HHHHH-----cCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHhHHHHHHHHHccCC---HhHHHH
Q 043480 324 EGMRR-----RGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM----NLSPDRILYTTIIDCLCKSRE---IGTAYG 391 (493)
Q Consensus 324 ~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~ 391 (493)
++... .. +....++..+...+...|++++|...++...+. +-+.....+..+...+...++ +.+|..
T Consensus 246 ~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99886 42 334677888999999999999999999988763 112233456666677777888 777777
Q ss_pred HHHHHHhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 392 VFLDMVEQGITP-DVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 392 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
.+++. +..| ....+..+...|...|++++|...|++..+
T Consensus 325 ~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 325 YFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77662 2222 234667888999999999999999999865
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.40 E-value=4.9e-11 Score=95.93 Aligned_cols=164 Identities=15% Similarity=0.083 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLC 381 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (493)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 45556667777788888888887776553 2356677777778888888888888888877654 456777778888888
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043480 382 KSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACR 461 (493)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 461 (493)
..|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+... .+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888887652 44667777888888888888888888888877532 267788888888888888888888
Q ss_pred HHHHHHHc
Q 043480 462 LWDQMMEK 469 (493)
Q Consensus 462 ~~~~~~~~ 469 (493)
.++++.+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88888764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-10 Score=97.10 Aligned_cols=207 Identities=8% Similarity=-0.007 Sum_probs=158.3
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHH
Q 043480 263 PDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILI 342 (493)
Q Consensus 263 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 342 (493)
.++..+......+...|++++|...|.+.+...+.++...+..+..++...|++++|++.+++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4667888888899999999999999999998876557777777899999999999999999999887433 667888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC---HhhHHHHH
Q 043480 343 KAFLREGSSAMAEKLLNQMRGMNLSPDR-------ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD---VISYNALI 412 (493)
Q Consensus 343 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~ 412 (493)
..+...|++++|...++...+.. +.+. ..|..+...+...|++++|...|+++++. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998764 4455 45788888888999999999999999875 454 46677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043480 413 NGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIE 483 (493)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 483 (493)
.+|... +..+++++...+ ..+...+.... ....+.+++|...++++.+. .|+......++.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~ 221 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 777654 344556665543 22444554443 34456789999999999986 565544444443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.1e-11 Score=116.06 Aligned_cols=164 Identities=11% Similarity=0.007 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 043480 301 VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCL 380 (493)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (493)
.+|+.+...+.+.|++++|++.|++..+... -+...+..+..++.+.|++++|+..|++..+.. +.+...|..+..+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3445555555555555555555555554421 134455555555555555555555555555443 33445555555555
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043480 381 CKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELAC 460 (493)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 460 (493)
...|++++|.+.|++.++.. +-+...|..+..+|...|++++|+..|++..+.... +...+..+..++...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHH
Confidence 55555555555555555432 223445555555555555555665555555553211 3555555555555555555555
Q ss_pred HHHHHHHH
Q 043480 461 RLWDQMME 468 (493)
Q Consensus 461 ~~~~~~~~ 468 (493)
+.++++++
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.34 E-value=6e-09 Score=96.88 Aligned_cols=382 Identities=9% Similarity=0.010 Sum_probs=182.7
Q ss_pred HcC-ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHH
Q 043480 21 KAG-LIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLIN 99 (493)
Q Consensus 21 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 99 (493)
+.| +++.|+.+|+.+...- |. |+++.+..+|++.+.. .|+...|...+....+.++. .
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~---~ 64 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQK---K 64 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC------
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCch---H
Confidence 456 4888888888887642 32 7899999999999885 57888888888777665531 1
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CC-CCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHhc
Q 043480 100 ILLDNMDKLALEVFHKMVSK-GR-EPDVVTYTIVIDGLCK----AKEFDKAVQAWEHMIENGIKPDN-KACAALVVGLCG 172 (493)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 172 (493)
+....+|+..+.. |. +.+...|...+..+.. +++.+.+..+|++.+.... .+. ..|..... +..
T Consensus 65 -------~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~-~~~~~lw~~Y~~-fE~ 135 (493)
T 2uy1_A 65 -------FKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPM-GSLSELWKDFEN-FEL 135 (493)
T ss_dssp --------CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCC-TTHHHHHHHHHH-HHH
T ss_pred -------HHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChh-hhHHHHHHHHHH-HHH
Confidence 3345566665543 43 3366788888876542 4678889999999987421 111 11211111 111
Q ss_pred cCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--C-----
Q 043480 173 DGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEV--M----- 245 (493)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~----- 245 (493)
......+..+..... +.+..|..+++.+...--..+...|...+..-...+ -
T Consensus 136 ~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~ 194 (493)
T 2uy1_A 136 ELNKITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPH 194 (493)
T ss_dssp HHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHH
T ss_pred HhccccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhh
Confidence 111111222211110 011122222222111000012223333332211110 0
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHH-HHHH
Q 043480 246 LDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAY-KLFE 324 (493)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~ 324 (493)
.+.+..+|+++... .+.++..|...+..+.+.|+.+.|..++.+.... +. +...|.. |......++.. .+.+
T Consensus 195 ~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~-~~~l~~~----y~~~~e~~~~~~~l~~ 267 (493)
T 2uy1_A 195 ESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SD-GMFLSLY----YGLVMDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-SSHHHHH----HHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-cHHHHHH----HHhhcchhHHHHHHHH
Confidence 12344455554432 1333444555555555555555555555555554 21 2222211 11111111111 1111
Q ss_pred HHHHc-----C---CCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc-CCHhHHHHHHHH
Q 043480 325 GMRRR-----G---IELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKS-REIGTAYGVFLD 395 (493)
Q Consensus 325 ~~~~~-----~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~ 395 (493)
..... + .......|...+....+.++.+.|..+|+.. +.. ..+...|...+..-... ++.+.|..+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 10000 0 0001233444555555566677777777776 321 22334443322222222 357777777777
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 396 MVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 396 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
.++. .+-+...|...+......|+.+.|..+|+++. .....|...+.--...|+.+.+.++++++.+
T Consensus 346 al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7654 22234445555665666677777777777752 1466666666666666777777777776664
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-11 Score=105.51 Aligned_cols=234 Identities=12% Similarity=-0.019 Sum_probs=160.6
Q ss_pred HHcCChhHHHHHHHHHhh-------CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC------C-CCcChhhHHHH
Q 043480 20 VKAGLIDQAVHVFDEMTQ-------SNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL------G-FSLTPFTYSRF 85 (493)
Q Consensus 20 ~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 85 (493)
...|++++|+..|+++.+ .+.+....++..+..++...|++++|+..++++++. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456788888888887665 233445677888999999999999999999998864 1 12345678889
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC------CCCC-
Q 043480 86 ISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN------GIKP- 158 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~- 158 (493)
..++...|+++.|...++ ++++.+++......+....++..+...|...|++++|.+.|++..+. +..|
T Consensus 92 ~~~~~~~g~~~~A~~~~~----~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCK----RALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHHTTTCHHHHHHHHH----HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHhccHHHHHHHHH----HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 999999999988877773 44445544433222334678889999999999999999999998764 1122
Q ss_pred CHHhHHHHHHHHhccCchhHHHHHHHHHHhC-------CCC-CChhhHHHHHHHHHhcCC------HHHHHHHHHHHHHC
Q 043480 159 DNKACAALVVGLCGDGKVDLAYELTVGAMKG-------KVE-FGVLIYNALISGFCRTGR------IRRAMAIKSFMKWN 224 (493)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~-~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~ 224 (493)
...++..+...+...|++++|...++++.+. ... .....+..+...+...+. +..+...++.....
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD 247 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC
Confidence 3567888999999999999999999988753 111 223334444333333332 22333333222211
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 043480 225 GCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMES 258 (493)
Q Consensus 225 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (493)
.+....++..+...+...|++++|...+++..+
T Consensus 248 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 248 -SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123345678889999999999999999998875
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-11 Score=106.35 Aligned_cols=236 Identities=14% Similarity=-0.005 Sum_probs=165.6
Q ss_pred HhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC------CCCC-CHH
Q 043480 89 LCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN------GIKP-DNK 161 (493)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~ 161 (493)
....|+++.|...+ ++|++.+++......+....++..+...|...|++++|+..|++..+. +-.| ...
T Consensus 11 ~~~~~~~~~A~~~~----~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (283)
T 3edt_B 11 SSGLVPRGSAVPLC----KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAA 86 (283)
T ss_dssp --CCSCSSSHHHHH----HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred cCCCCCHHHHHHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHH
Confidence 34578888888877 567777777765433445678999999999999999999999998754 2222 356
Q ss_pred hHHHHHHHHhccCchhHHHHHHHHHHhC------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CC
Q 043480 162 ACAALVVGLCGDGKVDLAYELTVGAMKG------K-VEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWN------G-CE 227 (493)
Q Consensus 162 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~ 227 (493)
++..+...+...|++++|.+.+.+.... . .+....++..+...|...|++++|...+++.... + .+
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 7888999999999999999999988764 1 1334667888999999999999999999998764 1 12
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHC-------CCCCC-hhhHHHHHHHHHccCCHH------HHHHHHHHHHH
Q 043480 228 PDLVTYNAILNYYCDEVMLDEAEKLVMEMESC-------GIEPD-VYSYNQLLKGLCNSNQLD------KAYMFMVKKME 293 (493)
Q Consensus 228 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~ 293 (493)
....++..+...+...|++++|...++++.+. ...+. ...+..+...+...+... .+...+.....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 23567888899999999999999999988753 11222 233333333333323222 22221111110
Q ss_pred cCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043480 294 AKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRR 329 (493)
Q Consensus 294 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (493)
.......++..+...|...|++++|...+++..+.
T Consensus 247 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 -DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11113456888999999999999999999988753
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.25 E-value=3.5e-08 Score=91.75 Aligned_cols=362 Identities=8% Similarity=-0.016 Sum_probs=210.0
Q ss_pred hcC-ChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 043480 56 RHS-RFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDG 134 (493)
Q Consensus 56 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 134 (493)
+.| +++.|..+|+.+... -|. +++ +.+..+|++.+.. .|+...|...+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~-----------e~~~~iferal~~--~ps~~LW~~Y~~f 56 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDY-----------RSLESLFGRCLKK--SYNLDLWMLYIEY 56 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCH-----------HHHHHHHHHHSTT--CCCHHHHHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCH-----------HHHHHHHHHHhcc--CCCHHHHHHHHHH
Confidence 456 377888888887664 233 556 6778889988874 5799999999887
Q ss_pred HhccCC-HHHHHHHHHHHHHC-CCCC-CHHhHHHHHHHHh----ccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 043480 135 LCKAKE-FDKAVQAWEHMIEN-GIKP-DNKACAALVVGLC----GDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCR 207 (493)
Q Consensus 135 ~~~~~~-~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (493)
..+.+. .+....+|+..+.. |..| +...|...+..+. ..++.+.+..+|+..+......-...|...... ..
T Consensus 57 ~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~ 135 (493)
T 2uy1_A 57 VRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-EL 135 (493)
T ss_dssp HHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HH
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HH
Confidence 777663 45677788887753 4333 5677777776654 346788899999999873211111122222111 11
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC--C-----
Q 043480 208 TGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSN--Q----- 280 (493)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~----- 280 (493)
..+...+.+++.+.. +.+..|..+++.+...--..+...|...+..-...+ -
T Consensus 136 ~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~ 194 (493)
T 2uy1_A 136 ELNKITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPH 194 (493)
T ss_dssp HHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHH
T ss_pred HhccccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhh
Confidence 112222333322211 123334444443332100013345555554432221 1
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHH-HHHHH
Q 043480 281 LDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMA-EKLLN 359 (493)
Q Consensus 281 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~ 359 (493)
.+.+..+|++++...+. .+..|...+..+.+.|+.+.|..+|++.... +.+...+. .|+.....++. ..+.+
T Consensus 195 ~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~ 267 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHH
Confidence 34567889998886554 6778888888888999999999999999987 33332222 22222111111 11221
Q ss_pred HHHhCC--------CCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-cCChhHHHHHHHH
Q 043480 360 QMRGMN--------LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCK-SSRVSEAMHLYEE 430 (493)
Q Consensus 360 ~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~ 430 (493)
...... ......+|...+....+.++.+.|..+|+++ .. ...+...|......-.. .++.+.|..+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 110000 0112356777788777788999999999999 32 12344455433322223 3479999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043480 431 MQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIE 483 (493)
Q Consensus 431 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 483 (493)
..+.- .-++..+...++.....|+.+.|..+++++. .....|...+.
T Consensus 346 al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~ 392 (493)
T 2uy1_A 346 GLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIE 392 (493)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHH
T ss_pred HHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 98753 2246667778888889999999998888862 23455555444
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.6e-10 Score=96.49 Aligned_cols=172 Identities=10% Similarity=0.051 Sum_probs=118.6
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhccCCC-C-cCh
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF---SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF-S-LTP 79 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~ 79 (493)
.+.++..+..++..+.+.|++++|+..|+++.+.. |.+ ...+..+..++.+.|++++|+..|++.++... . ..+
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 46677888899999999999999999999999875 444 67788899999999999999999999998632 1 224
Q ss_pred hhHHHHHHHHhc--------cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhH-----------------HHHHHH
Q 043480 80 FTYSRFISGLCE--------VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTY-----------------TIVIDG 134 (493)
Q Consensus 80 ~~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-----------------~~l~~~ 134 (493)
.++..+..++.. .|++ +.|+..|++++.. .+.+.... ..+...
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~-----------~~A~~~~~~~l~~-~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~ 157 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDT-----------RKAIEAFQLFIDR-YPNHELVDDATQKIRELRAKLARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHH-----------HHHHHHHHHHHHH-CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhH-----------HHHHHHHHHHHHH-CcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778877 8888 6667777777764 22233333 334556
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCC--CHHhHHHHHHHHhcc----------CchhHHHHHHHHHHhC
Q 043480 135 LCKAKEFDKAVQAWEHMIENGIKP--DNKACAALVVGLCGD----------GKVDLAYELTVGAMKG 189 (493)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 189 (493)
|.+.|++++|+..|+++++..... ....+..+..++... |++++|...|+.+.+.
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 666666666666666666542111 123455555555544 5555666666555543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.23 E-value=8.5e-09 Score=87.52 Aligned_cols=179 Identities=9% Similarity=0.026 Sum_probs=93.3
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043480 284 AYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGI-ELDVVTFTILIKAFLREGSSAMAEKLLNQMR 362 (493)
Q Consensus 284 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 362 (493)
++..|++....+ .++...+..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444454444332 22344444555666666666666666666654432 1244455556666666666666666666665
Q ss_pred hCCCCC-----CHHhHHHHHHHH--HccC--CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 363 GMNLSP-----DRILYTTIIDCL--CKSR--EIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 363 ~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 33 234444444442 2223 566666666666544 33322223333356666666666666665443
Q ss_pred cC-----C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 434 RG-----A---HP-DEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 434 ~~-----~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.. . .| |+.++..+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 0 12 45555455555555555 566666666653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.22 E-value=5.8e-10 Score=84.21 Aligned_cols=131 Identities=12% Similarity=0.199 Sum_probs=102.4
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGL 89 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 89 (493)
.+|..++..+...|++++|+++|+++.+.+ +.+...+..++..+...|++++|...++++...+ +.+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 356778888999999999999999988765 5667778888888888999999999999887764 44566777788888
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 90 CEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
...|++ +.|.+.++++... .+.+...+..+...+...|++++|...++++...
T Consensus 80 ~~~~~~-----------~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDY-----------DEAIEYYQKALEL-DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCH-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCH-----------HHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 888888 5555666666554 3445677777888888888888888888887764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.1e-10 Score=90.30 Aligned_cols=165 Identities=10% Similarity=-0.004 Sum_probs=124.7
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISG 88 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 88 (493)
...+..++..+.+.|++++|+..|+++.+.+ |.+...+..+..++...|++++|+..++++.... |++..+..+...
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~ 82 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKL 82 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHH
Confidence 3456778899999999999999999998876 6778889999999999999999999999998764 355433322211
Q ss_pred H-hccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHhHHHH
Q 043480 89 L-CEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKP-DNKACAAL 166 (493)
Q Consensus 89 ~-~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 166 (493)
. ...++. ..|+..+++.... .+.+...+..+...+...|++++|...|+++.+....+ +...+..+
T Consensus 83 ~~~~~~~~-----------~~a~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l 150 (176)
T 2r5s_A 83 ELHQQAAE-----------SPELKRLEQELAA-NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTF 150 (176)
T ss_dssp HHHHHHTS-----------CHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred HHHhhccc-----------chHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHH
Confidence 1 111111 2356677777764 34467888889999999999999999999998764332 34578888
Q ss_pred HHHHhccCchhHHHHHHHHHHh
Q 043480 167 VVGLCGDGKVDLAYELTVGAMK 188 (493)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~ 188 (493)
...+...|+.++|...|++.+.
T Consensus 151 ~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHH
Confidence 8888888999988888877653
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-09 Score=93.91 Aligned_cols=164 Identities=14% Similarity=0.109 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc-CHhHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCC-CC----H
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRR----GIEL-DVVTFTILIKAFLRE-GSSAMAEKLLNQMRGMNLS-PD----R 370 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~-~~----~ 370 (493)
+|+.+..+|...|++++|+..+++..+. |-.. -..++..+...|... |++++|...|++..+.... .+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 3444445555555555555555444332 1000 123556666677775 7777777777766542100 01 3
Q ss_pred HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCH------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----
Q 043480 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDV------ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD----- 439 (493)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----- 439 (493)
.++..+...+...|++++|...|++..+....... ..|..+..++...|++++|...+++..+. .|+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence 45677777778888888888888887765322111 14566677777788888888888877653 232
Q ss_pred -HHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 043480 440 -EVTFKLLIGGLV--QEKKLELACRLWDQMM 467 (493)
Q Consensus 440 -~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 467 (493)
...+..++.++. ..+++++|...++++.
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 113344555554 3466777777776654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.4e-10 Score=91.11 Aligned_cols=86 Identities=13% Similarity=0.034 Sum_probs=49.4
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHH----------------HHHHHHhcCChhHHHHHHHHhc
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNR----------------FIGVLIRHSRFDLVQFYYQQMH 71 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~ 71 (493)
+...+...+..+.+.|++++|+..|+++.+.+ |.++..|.. +..++.+.|++++|+..|++.+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455567778889999999999999988865 444444544 4444444444444444444444
Q ss_pred cCCCCcChhhHHHHHHHHhccCCh
Q 043480 72 PLGFSLTPFTYSRFISGLCEVKNF 95 (493)
Q Consensus 72 ~~~~~~~~~~~~~ll~~~~~~~~~ 95 (493)
+.. +.++..+..+..++...|++
T Consensus 82 ~~~-p~~~~~~~~lg~~~~~~g~~ 104 (208)
T 3urz_A 82 QKA-PNNVDCLEACAEMQVCRGQE 104 (208)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHC-CCCHHHHHHHHHHHHHcCCH
Confidence 432 22334444444444444444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=9.3e-10 Score=95.51 Aligned_cols=205 Identities=7% Similarity=-0.086 Sum_probs=137.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHhccCCC---Cc--Chh
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQS----NCRV-FSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF---SL--TPF 80 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~ 80 (493)
.|...+..|...|++++|+..|+++.+. +.++ ...+|+.+..+|...|++++|+..|++.++... .+ -..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5777888999999999999999987653 2122 256788899999999999999999998876421 11 135
Q ss_pred hHHHHHHHHhcc-CChhhHHHHHHHHHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 043480 81 TYSRFISGLCEV-KNFTLINILLDNMDKLALEVFHKMVSKGREPD-VVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKP 158 (493)
Q Consensus 81 ~~~~ll~~~~~~-~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 158 (493)
++..+...|... |+++.|...++ +|++++.. .+..+. ..+++.+...+.+.|++++|+..|++..+.....
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~----~Al~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYE----LAGEWYAQ---DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHH----HHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHH----HHHHHHHh---CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 788888889886 99976665553 33333321 111111 3568888899999999999999999988764322
Q ss_pred CH------HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCC-C---hhhHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 043480 159 DN------KACAALVVGLCGDGKVDLAYELTVGAMKGKVEF-G---VLIYNALISGFC--RTGRIRRAMAIKSFMK 222 (493)
Q Consensus 159 ~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 222 (493)
.. .++..+..++...|++++|...|++........ + ...+..++..+. ..+++++|+..|+.+.
T Consensus 192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 21 145667777888888888888888877642110 1 112333444443 3355667777666554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.6e-10 Score=110.11 Aligned_cols=171 Identities=6% Similarity=-0.147 Sum_probs=89.0
Q ss_pred HHcCChhHHHHHHHHHh--------hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 20 VKAGLIDQAVHVFDEMT--------QSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 20 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
...|++++|++.|+++. +.+ +.+...+..+..++...|++++|+..|+++++.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45566666666666655 332 4444555555556666666666666666655543 3344555555555556
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLC 171 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (493)
.|++ ++|++.|++..+. .+.+...|..+..++.+.|++++ ++.|++..+.+ +.+...+..+..++.
T Consensus 480 ~g~~-----------~~A~~~~~~al~l-~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~ 545 (681)
T 2pzi_A 480 TGDY-----------DSATKHFTEVLDT-FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARS 545 (681)
T ss_dssp HTCH-----------HHHHHHHHHHHHH-STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cCCH-----------HHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHH
Confidence 6665 4444555554443 22244555555555666666666 66665555542 123445555555555
Q ss_pred ccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 043480 172 GDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCR 207 (493)
Q Consensus 172 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (493)
..|++++|...|+++.+.. +.+...+..+..++..
T Consensus 546 ~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 546 AEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLS 580 (681)
T ss_dssp HTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC-
T ss_pred HcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHc
Confidence 5556655555555555432 2223344444444433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-08 Score=86.30 Aligned_cols=210 Identities=11% Similarity=-0.006 Sum_probs=94.9
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 043480 133 DGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIR 212 (493)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 212 (493)
+-..-.|.+..++.-...+ ....+.....-+.+++...|+++... ...|....+..+. .|...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la-~~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYV-QFLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHH-HHHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHH-HHhccc---
Confidence 3344567777777633222 11222334444556666666655310 1122222222222 222221
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 043480 213 RAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGI-EPDVYSYNQLLKGLCNSNQLDKAYMFMVKK 291 (493)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 291 (493)
|+..+++....+ +++..++..+..++...|++++|++++......+- .-+...+...+..+.+.|+.+.|.+.++++
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455555554443 34444444555555666666666666665544331 123344445555555566666666655555
Q ss_pred HHcCC---CCChhhHHHHHHHHH--HcC--CHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043480 292 MEAKG---LRDKVSYNTVIEAFC--KGG--QTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMR 362 (493)
Q Consensus 292 ~~~~~---~~~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 362 (493)
.+..+ ..+..+...+..++. ..| +..+|..+|+++... .|+..+...++.++.+.|++++|.+.++.+.
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44321 001223333333321 112 555555555555443 2232222233334555555555555555443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.5e-09 Score=87.52 Aligned_cols=138 Identities=7% Similarity=-0.050 Sum_probs=88.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043480 341 LIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR 420 (493)
Q Consensus 341 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (493)
+..++...|++++|...|+...+.. +.+...+..+..++...|++++|...|+++++.. +.+..++..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 6677777788888888887777655 5567777777777788888888888888877653 3356667777776655543
Q ss_pred --hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043480 421 --VSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEA 484 (493)
Q Consensus 421 --~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 484 (493)
.+.+...++.... ..|....+.....++...|++++|...++++++ +.|+......+.+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~i 199 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 3334444544432 222233344455666667788888888888774 46776655554443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.15 E-value=3.9e-09 Score=79.56 Aligned_cols=129 Identities=12% Similarity=0.153 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 043480 338 FTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCK 417 (493)
Q Consensus 338 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 417 (493)
+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4445555555666666666666655433 3345555556666666666666666666665542 3345556666666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 418 SSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 418 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.|++++|.+.++++.+... .+...+..++..+...|++++|...++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6777777777766665422 24566666666777777777777777666653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-09 Score=94.23 Aligned_cols=167 Identities=10% Similarity=-0.006 Sum_probs=121.9
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
|.+...+..++..+.+.|++++|+..|+++.+.+ |.+...+..+..++.+.|++++|...++++.... |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 5566677788888889999999999999888876 6677888888888999999999999998887763 444322222
Q ss_pred H-HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHhH
Q 043480 86 I-SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIK-PDNKAC 163 (493)
Q Consensus 86 l-~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 163 (493)
. ..+...++. +.|+..+++.... .+.+...+..+...+...|++++|++.|.++.+.... .+...+
T Consensus 191 ~~~~l~~~~~~-----------~~a~~~l~~al~~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 191 AQIELLXQAAD-----------TPEIQQLQQQVAE-NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp HHHHHHHHHTS-----------CHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred HHHHHHhhccc-----------CccHHHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 2 224445555 3455666666665 3556778888888888889999999888888875322 125677
Q ss_pred HHHHHHHhccCchhHHHHHHHHHH
Q 043480 164 AALVVGLCGDGKVDLAYELTVGAM 187 (493)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~ 187 (493)
..++..+...|+.++|...+++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 778888888888888877776654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.9e-09 Score=90.81 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--ChhhH
Q 043480 229 DLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPD---VYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLR--DKVSY 303 (493)
Q Consensus 229 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~ 303 (493)
+...+-.....+...|++++|...|+.+.+.. +.+ ...+..+..++.+.|++++|...|.+.+...+.. ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44445555555566666666666666665532 112 3445555556666666666666666665543321 12334
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHHc
Q 043480 304 NTVIEAFCK--------GGQTRRAYKLFEGMRRR 329 (493)
Q Consensus 304 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~ 329 (493)
..+..++.. .|++++|...|+++.+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 444555555 55555565555555544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.12 E-value=5.8e-09 Score=86.62 Aligned_cols=188 Identities=10% Similarity=-0.026 Sum_probs=121.4
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcCh--hh
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF---SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTP--FT 81 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 81 (493)
.++..+..++..+.+.|++++|+..|+++.+.. |.+ ...+..++.++.+.|++++|+..|+++++..+.... .+
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 356677788999999999999999999999864 222 356788889999999999999999999886422111 23
Q ss_pred HHHHHHHHhc------------------cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHH
Q 043480 82 YSRFISGLCE------------------VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDK 143 (493)
Q Consensus 82 ~~~ll~~~~~------------------~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 143 (493)
+..+..++.. .|++ ++|+..|+++++. .|-+...+.......
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~A~~~~~~~l~~-~P~~~~a~~a~~~l~-------- 140 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQA-----------RAAFSDFSKLVRG-YPNSQYTTDATKRLV-------- 140 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHH-----------HHHHHHHHHHHTT-CTTCTTHHHHHHHHH--------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHH-----------HHHHHHHHHHHHH-CcCChhHHHHHHHHH--------
Confidence 4444444443 2344 7788888888875 232333333221100
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043480 144 AVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEF--GVLIYNALISGFCRTGRIRRAMAIKSFM 221 (493)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 221 (493)
.+...+. .....+...+...|+++.|...|+.+++..... ....+..+..++.+.|++++|.+.++.+
T Consensus 141 --~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 141 --FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp --HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 0011110 112345566777778888888887777643111 1245667777888888888888888877
Q ss_pred HHCC
Q 043480 222 KWNG 225 (493)
Q Consensus 222 ~~~~ 225 (493)
...+
T Consensus 211 ~~~~ 214 (225)
T 2yhc_A 211 AANS 214 (225)
T ss_dssp HHCC
T ss_pred HhhC
Confidence 7663
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.3e-08 Score=84.21 Aligned_cols=227 Identities=9% Similarity=-0.011 Sum_probs=144.7
Q ss_pred HHHHHHHcCCh-hHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHhccCCCCcChhhHHHHHHHH--
Q 043480 15 QISNLVKAGLI-DQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHS--RFDLVQFYYQQMHPLGFSLTPFTYSRFISGL-- 89 (493)
Q Consensus 15 l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-- 89 (493)
.+.+..+.|.+ ++|+++++.++..+ |.+..+|+.-..++...| ++++++.+++.++..+ +.+..+|+.--..+
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHH
Confidence 34444556655 68999999999987 777888999999999988 9999999999999875 44555666655555
Q ss_pred --hcc---CChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHH--HHHHHHHHHHHCCCCCCHHh
Q 043480 90 --CEV---KNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFD--KAVQAWEHMIENGIKPDNKA 162 (493)
Q Consensus 90 --~~~---~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~ 162 (493)
... +++ +.++++++.+... .+.+..+|+.-..++.+.|.++ ++++.++++.+.... |..+
T Consensus 116 ~~~~l~~~~~~-----------~~EL~~~~~~l~~-~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sA 182 (306)
T 3dra_A 116 IMELNNNDFDP-----------YREFDILEAMLSS-DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSA 182 (306)
T ss_dssp HHHHTTTCCCT-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHhccccCCH-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHH
Confidence 444 555 5667777777775 4557778888877777788887 888888888876533 6667
Q ss_pred HHHHHHHHhccCc------hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHH
Q 043480 163 CAALVVGLCGDGK------VDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRR-AMAIKSFMKWNG--CEPDLVTY 233 (493)
Q Consensus 163 ~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~ 233 (493)
|+.....+...++ ++++++.+...+... +-|...|+-+-..+.+.|+... +....+++...+ -+.++..+
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH
Confidence 7766666555554 555555555555443 3355555555555544444222 223333332211 12234444
Q ss_pred HHHHHHHHccCChHHHHHHHHHHH
Q 043480 234 NAILNYYCDEVMLDEAEKLVMEME 257 (493)
Q Consensus 234 ~~ll~~~~~~~~~~~a~~~~~~~~ 257 (493)
..+...+.+.|+.++|.++++.+.
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHH
Confidence 444444445555555555555544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4e-10 Score=86.75 Aligned_cols=145 Identities=15% Similarity=0.015 Sum_probs=88.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCC
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKN 94 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 94 (493)
|..++...|++++|+..++...... |.++..+..+...|.+.|++++|++.|++.++.. +.++.+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 4455566677777777777776653 4445556667777777777777777777777664 4456677777777777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHH-HHHHHHCCCCCCHHhHHHHHHHHhcc
Q 043480 95 FTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQA-WEHMIENGIKPDNKACAALVVGLCGD 173 (493)
Q Consensus 95 ~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 173 (493)
+ +.|+..|++.++. .+-+..+|..+...|.+.|++++|.+. +++..+.. +-+..++......+...
T Consensus 81 ~-----------~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 81 T-----------DKAVECYRRSVEL-NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp H-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTC
T ss_pred h-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 7 4555666666554 233566677777777777777665544 46665542 12344444444444444
Q ss_pred C
Q 043480 174 G 174 (493)
Q Consensus 174 ~ 174 (493)
|
T Consensus 148 G 148 (150)
T 4ga2_A 148 G 148 (150)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.1e-08 Score=80.49 Aligned_cols=177 Identities=12% Similarity=0.059 Sum_probs=120.3
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcC----CHHHHHHHHH
Q 043480 284 AYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREG----SSAMAEKLLN 359 (493)
Q Consensus 284 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 359 (493)
|+..|.+..+. .++..+..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|..+|+
T Consensus 5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 44555555554 356666667777777777777777777777654 45556666666665 5 7778888887
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHc----cCCHhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHh----cCChhHHHHHHHH
Q 043480 360 QMRGMNLSPDRILYTTIIDCLCK----SREIGTAYGVFLDMVEQGIT-PDVISYNALINGLCK----SSRVSEAMHLYEE 430 (493)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 430 (493)
...+.+ +...+..+...|.. .+++++|...|++..+.|.. .+...+..|...|.. .+++++|+..|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 776643 45566667777765 67888888888888776421 015667777777777 7788888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCCC
Q 043480 431 MQIRGAHPDEVTFKLLIGGLVQE-K-----KLELACRLWDQMMEKGFT 472 (493)
Q Consensus 431 ~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~~ 472 (493)
..+. ..+...+..|...|... | ++++|..++++..+.|..
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 8765 23455667777777653 3 788888888888877643
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-08 Score=99.96 Aligned_cols=173 Identities=8% Similarity=-0.073 Sum_probs=114.4
Q ss_pred HccCCHHHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHH
Q 043480 276 CNSNQLDKAYMFMVKKM--------EAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLR 347 (493)
Q Consensus 276 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (493)
...|++++|+..+.+.. ...+ .+...+..+...+...|++++|.+.|++..+.+. .+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 56677777777777776 3322 2555666677777777777777777777776532 255667777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 043480 348 EGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHL 427 (493)
Q Consensus 348 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 427 (493)
.|++++|...|++..+.. +.+...+..+..++...|++++ ...|+++++.. +.+...|..+..++...|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777654 4456667777777777777777 77777777652 33556677777777777777777777
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 043480 428 YEEMQIRGAHPD-EVTFKLLIGGLVQEKK 455 (493)
Q Consensus 428 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 455 (493)
|++..+. .|+ ...+..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 7777653 343 5566666666655444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-09 Score=83.90 Aligned_cols=139 Identities=12% Similarity=0.014 Sum_probs=70.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHH
Q 043480 312 KGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYG 391 (493)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 391 (493)
..|++++|+..+....... +.+...+..+...|...|++++|+..|+...+.. +.+...|..+..+|...|++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 3445555555555544321 1123334445555555566666666665555543 3455555555555666666666666
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043480 392 VFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHL-YEEMQIRGAHPDEVTFKLLIGGLVQEK 454 (493)
Q Consensus 392 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g 454 (493)
.|++.++.. +-+..++..+...|...|++++|.+. +++..+..+. ++.+|......+...|
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 666555532 22345555555555555555544433 3555443211 4555555555544444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.6e-08 Score=81.80 Aligned_cols=187 Identities=9% Similarity=-0.026 Sum_probs=114.3
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH--hHHH
Q 043480 264 DVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRD--KVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDV--VTFT 339 (493)
Q Consensus 264 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 339 (493)
+...+..+...+.+.|++++|...|.++....+... ...+..+..++.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344555666778888888888888888887654322 345777778888888888888888888876433111 1344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCH-hh-----------
Q 043480 340 ILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDV-IS----------- 407 (493)
Q Consensus 340 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~----------- 407 (493)
.+..++...+.. .+ ..|..+...+...|++++|...|+++++. .|+. ..
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHH
Confidence 444444432100 00 00111111222334444555555544443 1221 11
Q ss_pred ------HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 408 ------YNALINGLCKSSRVSEAMHLYEEMQIRGAHP--DEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 408 ------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
...+...|...|++++|+..|+++.+..+.. ....+..+..++.+.|++++|.+.++.+...
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 1345667888999999999999998753221 1357888999999999999999999988875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.3e-08 Score=79.38 Aligned_cols=141 Identities=13% Similarity=0.014 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccC----chhHHHHHH
Q 043480 108 LALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDG----KVDLAYELT 183 (493)
Q Consensus 108 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 183 (493)
+|++.|++..+.| +..++..+...|...+++++|++.|++..+.| +..++..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 45555556666666666666666666665543 44555555555554 4 555555555
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHc----cCChHHHHHHHH
Q 043480 184 VGAMKGKVEFGVLIYNALISGFCR----TGRIRRAMAIKSFMKWNGCE-PDLVTYNAILNYYCD----EVMLDEAEKLVM 254 (493)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~ 254 (493)
+...+.+ +...+..+...|.. .+++++|+.+|++..+.+.. .++..+..+...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 5555432 33444444444444 44555555555555444310 013344444444444 444444444444
Q ss_pred HHHH
Q 043480 255 EMES 258 (493)
Q Consensus 255 ~~~~ 258 (493)
...+
T Consensus 154 ~A~~ 157 (212)
T 3rjv_A 154 GSSS 157 (212)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.03 E-value=7.5e-07 Score=76.48 Aligned_cols=216 Identities=9% Similarity=-0.022 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHH----HHc---CCHHH
Q 043480 248 EAEKLVMEMESCGIEPDVYSYNQLLKGLCNSN--QLDKAYMFMVKKMEAKGLRDKVSYNTVIEAF----CKG---GQTRR 318 (493)
Q Consensus 248 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~ 318 (493)
+|+..++.+...+ +-+...|+.--..+...+ ++++++..+..++...+. +..+|+.-...+ ... +++++
T Consensus 51 ~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 51 RALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 4444444444322 122333344334444444 555555555555544332 333333333222 223 45566
Q ss_pred HHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC------HhHHH
Q 043480 319 AYKLFEGMRRRGIELDVVTFTILIKAFLREGSSA--MAEKLLNQMRGMNLSPDRILYTTIIDCLCKSRE------IGTAY 390 (493)
Q Consensus 319 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~ 390 (493)
++++++.+.+...+ +...|+--...+.+.|.++ ++...++.+.+.+ +-|...|+.-...+...+. +++++
T Consensus 129 EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 129 EFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 66666666655332 5555555555555555555 6666666666544 4455555555555555554 66777
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH-HHHHHHHHHHcC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 391 GVFLDMVEQGITPDVISYNALINGLCKSSRVSE-AMHLYEEMQIRG-A-HPDEVTFKLLIGGLVQEKKLELACRLWDQMM 467 (493)
Q Consensus 391 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 467 (493)
+.+.+++... +-|...|+.+...+.+.|+..+ +..+.+++.+.+ . ..+...+..++++|.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7777776653 3466667766666666666443 444555554322 1 1266777777777777777777777777776
Q ss_pred H
Q 043480 468 E 468 (493)
Q Consensus 468 ~ 468 (493)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.6e-09 Score=82.93 Aligned_cols=159 Identities=11% Similarity=0.031 Sum_probs=77.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHccC
Q 043480 306 VIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDC-LCKSR 384 (493)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 384 (493)
....+...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+.. |+...+...... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 3344445555555555555544331 1134445555555555555555555555544332 132222211111 11112
Q ss_pred CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 043480 385 EIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQEKKLELACRLW 463 (493)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 463 (493)
....|...+++.++.. +.+...+..+..++...|++++|...|+++.+..+.+ +...+..+..++...|+.++|...+
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2233455565555531 2235555666666666666666666666665543322 2445566666666666666666666
Q ss_pred HHHHH
Q 043480 464 DQMME 468 (493)
Q Consensus 464 ~~~~~ 468 (493)
++.+.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.1e-09 Score=99.31 Aligned_cols=154 Identities=8% Similarity=-0.082 Sum_probs=101.2
Q ss_pred cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHH
Q 043480 22 AGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINIL 101 (493)
Q Consensus 22 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 101 (493)
.|++++|++.|+++.+.+ +.+...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~------ 73 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRH------ 73 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCH------
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH------
Confidence 467888888888887765 5667778888888888888888888888887764 44567777888888888888
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcc---CchhH
Q 043480 102 LDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGD---GKVDL 178 (493)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~ 178 (493)
++|.+.+++..+. .+.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+... |+.++
T Consensus 74 -----~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~ 146 (568)
T 2vsy_A 74 -----AEAAVLLQQASDA-APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDV 146 (568)
T ss_dssp -----HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred -----HHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHH
Confidence 5555666666554 34456778888888888888888888888887653 23566777788888887 88888
Q ss_pred HHHHHHHHHhCC
Q 043480 179 AYELTVGAMKGK 190 (493)
Q Consensus 179 a~~~~~~~~~~~ 190 (493)
|.+.+++..+.+
T Consensus 147 A~~~~~~al~~~ 158 (568)
T 2vsy_A 147 LSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC
Confidence 888888877654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-08 Score=87.46 Aligned_cols=165 Identities=12% Similarity=-0.005 Sum_probs=100.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHH-HHHH
Q 043480 300 KVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYT-TIID 378 (493)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~ 378 (493)
...+..+...+...|++++|...|++.....+. +...+..+...+...|++++|...++.+.... |+..... ....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 344455555666667777777777766665322 45566666666777777777777776665542 3333222 2222
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH
Q 043480 379 CLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQEKKLE 457 (493)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 457 (493)
.+...++.+.|...+++.++.. +.+...+..+...+...|++++|+..++++.+..... +...+..++..+...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 3445566666777777766542 3456666777777777777777777777776643221 2556777777777777777
Q ss_pred HHHHHHHHHHH
Q 043480 458 LACRLWDQMME 468 (493)
Q Consensus 458 ~a~~~~~~~~~ 468 (493)
+|...+++.+.
T Consensus 273 ~a~~~~r~al~ 283 (287)
T 3qou_A 273 ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 77776666543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.01 E-value=5.6e-09 Score=79.84 Aligned_cols=105 Identities=11% Similarity=-0.045 Sum_probs=92.9
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
+...|.++..+..+...+.+.|++++|++.|+++.+.+ |.++..|..+..++...|++++|+..|+++++.. +.++..
T Consensus 29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~ 106 (151)
T 3gyz_A 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTP 106 (151)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHH
T ss_pred hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHH
Confidence 44567788899999999999999999999999999987 7889999999999999999999999999999876 556788
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 82 YSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
|..+..++...|++ +.|+..|++.++.
T Consensus 107 ~~~lg~~~~~lg~~-----------~eA~~~~~~al~l 133 (151)
T 3gyz_A 107 VFHTGQCQLRLKAP-----------LKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHTTCH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCH-----------HHHHHHHHHHHHh
Confidence 99999999999999 5666777777764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2e-08 Score=96.15 Aligned_cols=155 Identities=10% Similarity=-0.033 Sum_probs=111.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHH
Q 043480 278 SNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKL 357 (493)
Q Consensus 278 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 357 (493)
.|++++|...+++.....+. +...+..+...+...|++++|.+.+++..+... .+...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47788888888888776543 677788888888899999999999998887643 3677888888888899999999999
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---CChhHHHHHHHHHHHc
Q 043480 358 LNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKS---SRVSEAMHLYEEMQIR 434 (493)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 434 (493)
+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99888765 5667888888888999999999999999888763 33567788888888888 8999999999988876
Q ss_pred CC
Q 043480 435 GA 436 (493)
Q Consensus 435 ~~ 436 (493)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 43
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.99 E-value=8.8e-09 Score=76.34 Aligned_cols=114 Identities=13% Similarity=0.051 Sum_probs=96.2
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
.|.....+......|.+.|++++|++.|+++++.+ |.++..|..+..++.+.|++++|+..|++.++.+ +.+...|..
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~ 86 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIR 86 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHH
Confidence 45667788999999999999999999999999987 7789999999999999999999999999999875 566788999
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVI 132 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 132 (493)
+..++...|++ +.|++.|++.++. .|.+...+..+.
T Consensus 87 lg~~~~~~~~~-----------~~A~~~~~~al~l-~P~~~~a~~~l~ 122 (126)
T 4gco_A 87 KAACLVAMREW-----------SKAQRAYEDALQV-DPSNEEAREGVR 122 (126)
T ss_dssp HHHHHHHTTCH-----------HHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred HHHHHHHCCCH-----------HHHHHHHHHHHHH-CcCCHHHHHHHH
Confidence 99999999999 6667777777774 233455555444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.8e-08 Score=86.01 Aligned_cols=130 Identities=11% Similarity=-0.051 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CC--CHH
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRR----GIEL-DVVTFTILIKAFLREGSSAMAEKLLNQMRGMNL---SP--DRI 371 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~ 371 (493)
.|+.+...|...|++++|+..|++.... |-.. ...++..+...|.. |++++|+..|++..+... .+ ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3444455555555555555555554322 1000 12345555555555 666666666665543210 00 134
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQ----GITPD-VISYNALINGLCKSSRVSEAMHLYEEMQ 432 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 432 (493)
++..+...|...|++++|...|++.++. +..+. ...+..+..++...|++++|...|++..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5666666667777777777777666542 11111 1244455555666677777777777766
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.92 E-value=9.3e-09 Score=89.89 Aligned_cols=193 Identities=10% Similarity=-0.066 Sum_probs=99.5
Q ss_pred cCChhHHHHHHHHHhhCCC------CCC----hhhHHHHHHHHHhcCChhHHHHHHHHhccCCC---Cc--ChhhHHHHH
Q 043480 22 AGLIDQAVHVFDEMTQSNC------RVF----SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF---SL--TPFTYSRFI 86 (493)
Q Consensus 22 ~g~~~~A~~~~~~~~~~~~------~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll 86 (493)
.|++++|.+++++..+... .++ ...|+..+..|...|++++|...|.+..+... .+ -..+|..+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5677788888877665321 111 11344555666667777777777766654310 00 123566666
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC---CC--CH
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREP-DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGI---KP--DN 160 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~ 160 (493)
.+|...|+++.|...++ +|++++... |.+. ...+++.+...|.. |++++|++.|++..+... .+ ..
T Consensus 84 ~~~~~~g~~~~A~~~~~----~Al~l~~~~---g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIE----KASVMYVEN---GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHTTCGGGGHHHHH----HHHHHHHTT---TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhCCCHHHHHHHHH----HHHHHHHHc---CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 66666677766665552 333333221 1111 13455666666666 777777777766554210 00 02
Q ss_pred HhHHHHHHHHhccCchhHHHHHHHHHHhCC----CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 161 KACAALVVGLCGDGKVDLAYELTVGAMKGK----VEFG-VLIYNALISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
.++..+...+...|++++|...|++..... ..+. ...+..+..++...|++++|...|++..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 345555556666666666666666555421 0000 1133444445555555555555555554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.91 E-value=9.4e-08 Score=78.53 Aligned_cols=130 Identities=8% Similarity=-0.046 Sum_probs=109.6
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISG 88 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 88 (493)
...+..++..+...|++++|++.|+++. +++...|..+..++...|++++|+..|++.++.. +.+...+..+..+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 4456778899999999999999999884 4578899999999999999999999999998875 5567889999999
Q ss_pred HhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCC----------------HhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 043480 89 LCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPD----------------VVTYTIVIDGLCKAKEFDKAVQAWEHMI 152 (493)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (493)
+...|++ +.|++.|++..... +.+ ...+..+..++...|++++|.+.|++..
T Consensus 81 ~~~~~~~-----------~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 81 YYQTEKY-----------DLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHTTCH-----------HHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcccH-----------HHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999 56667777776642 222 2678888999999999999999999999
Q ss_pred HCC
Q 043480 153 ENG 155 (493)
Q Consensus 153 ~~~ 155 (493)
+..
T Consensus 149 ~~~ 151 (213)
T 1hh8_A 149 SMK 151 (213)
T ss_dssp TTC
T ss_pred HcC
Confidence 863
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.90 E-value=5e-08 Score=83.86 Aligned_cols=198 Identities=10% Similarity=0.013 Sum_probs=132.3
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
|.+...+..++..+.+.|++++|+..|+++.+.+ |.+...|..+..++...|++++|+..+++.++.. +.+...+..+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4567788999999999999999999999999876 6688899999999999999999999999999875 5567889999
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 043480 86 ISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAA 165 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (493)
..++...|++++|. ..|++....+. .+...+...+....+ ...+. .+..........+......
T Consensus 79 g~~~~~~g~~~~A~-----------~~~~~al~l~p-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~ 142 (281)
T 2c2l_A 79 GQCQLEMESYDEAI-----------ANLQRAYSLAK-EQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSY 142 (281)
T ss_dssp HHHHHHTTCHHHHH-----------HHHHHHHHHHH-HTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHH
T ss_pred HHHHHHcCCHHHHH-----------HHHHHHHHhCc-cchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHH
Confidence 99999999995555 44444433210 011111111111111 11112 2222333333444444333
Q ss_pred HHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 043480 166 LVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRT-GRIRRAMAIKSFMKWN 224 (493)
Q Consensus 166 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 224 (493)
+... ..|+.++|.+.++...+.. +.+......+...+.+. +.+++|.++|.++.+.
T Consensus 143 l~~l--~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 143 LTRL--IAAERERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHH--HHHHHHHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHH--HHHHHHHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3332 2688899999888887653 23334444444445554 6688899999887653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.90 E-value=5.1e-07 Score=78.23 Aligned_cols=164 Identities=9% Similarity=-0.007 Sum_probs=120.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CcCHh----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHhHHH
Q 043480 306 VIEAFCKGGQTRRAYKLFEGMRRRGI-ELDVV----TFTILIKAFLREGSSAMAEKLLNQMRGMNLS-PD----RILYTT 375 (493)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 375 (493)
.+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...++.+.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788999999999988876422 12211 2334566666778999999999988873222 22 336888
Q ss_pred HHHHHHccCCHhHHHHHHHHHHh----C-CCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHH
Q 043480 376 IIDCLCKSREIGTAYGVFLDMVE----Q-GITPD-VISYNALINGLCKSSRVSEAMHLYEEMQIR----GAHPD-EVTFK 444 (493)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~ 444 (493)
+...|...|++++|...++++++ . +..+. ..++..+..+|...|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999884 1 11222 247788899999999999999999987542 22222 77889
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHc
Q 043480 445 LLIGGLVQEK-KLELACRLWDQMMEK 469 (493)
Q Consensus 445 ~l~~~~~~~g-~~~~a~~~~~~~~~~ 469 (493)
.+..++.+.| ++++|.+.+++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999 479999999988753
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.87 E-value=5.3e-08 Score=76.33 Aligned_cols=131 Identities=17% Similarity=0.152 Sum_probs=91.4
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
.+..+..++..+...|++++|...|+++.+.+ +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 34567778888888888888888888888765 5667778888888888888888888888887764 445667777777
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHH--HHHHHhccCCHHHHHHHHHHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTI--VIDGLCKAKEFDKAVQAWEHMI 152 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~ 152 (493)
++...|++ +.|...|++.... .+.+...+.. .+..+...|++++|++.+....
T Consensus 90 ~~~~~~~~-----------~~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKF-----------RAALRDYETVVKV-KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCH-----------HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccH-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77788887 4555666665554 2223444432 3333666777777777776654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=9.4e-07 Score=76.68 Aligned_cols=182 Identities=8% Similarity=-0.052 Sum_probs=126.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHhccCCCCcChhhHHHHHHHHh
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHS-RFDLVQFYYQQMHPLGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (493)
++.+-....+.+..++|+++++.++..+ |.+..+|+.-..++...| .+++++.+++.++... +.+..+|+.-..++.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 4433344444455578999999999987 777888998888888888 5999999999998875 566677777766666
Q ss_pred cc-C-ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHH--------HHHHHHHHHHHCCCCCCH
Q 043480 91 EV-K-NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFD--------KAVQAWEHMIENGIKPDN 160 (493)
Q Consensus 91 ~~-~-~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~ 160 (493)
.. + ++ +.++++++.+.+. .+.|..+|+.-..++.+.|.++ ++++.++++.+..+ -|.
T Consensus 135 ~l~~~~~-----------~~EL~~~~k~L~~-dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~ 201 (349)
T 3q7a_A 135 RISPQDP-----------VSEIEYIHGSLLP-DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNN 201 (349)
T ss_dssp HHCCSCC-----------HHHHHHHHHHTSS-CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCH
T ss_pred HhcCCCh-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCH
Confidence 65 5 55 5677888888775 3457777877666666666666 88888888887643 367
Q ss_pred HhHHHHHHHHhccCc-------hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 043480 161 KACAALVVGLCGDGK-------VDLAYELTVGAMKGKVEFGVLIYNALISGFCRTG 209 (493)
Q Consensus 161 ~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 209 (493)
.+|+.....+...++ ++++++.+.+.+... +-|...|+-+-..+.+.|
T Consensus 202 SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 202 SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 777777777766665 456666666665543 445556655544444444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=3.3e-08 Score=73.84 Aligned_cols=123 Identities=11% Similarity=0.067 Sum_probs=86.6
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
..+.+...+..++..+...|++++|+..|+++.... +.+...+..+..++...|++++|...+++..+.. +.+...+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 84 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYG 84 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHH
Confidence 445667778888888888888888888888887765 5567777788888888888888888888877653 34466677
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 043480 84 RFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKE 140 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 140 (493)
.+..++...|++ +.|...+++.... .+.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~-----------~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 85 RMGLALSSLNKH-----------VEAVAYYKKALEL-DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHTTCH-----------HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCH-----------HHHHHHHHHHHhc-CccchHHHHHHHHHHHHHhc
Confidence 777777777777 4555555555554 23345566666666655554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.85 E-value=2e-07 Score=76.58 Aligned_cols=127 Identities=9% Similarity=-0.096 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLC 381 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (493)
.+..+...+...|++++|.+.|++.. .|+...+..+...+...|++++|...++...+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556666777788888888777663 4566777777777778888888888887777654 456677777777777
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCCH----------------hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 382 KSREIGTAYGVFLDMVEQGITPDV----------------ISYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
..|++++|...+++..+.. +.+. ..+..+..++...|++++|...|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8888888888888777652 2122 56667777777777777777777777764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.83 E-value=9.1e-08 Score=70.70 Aligned_cols=116 Identities=11% Similarity=0.122 Sum_probs=94.6
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
+...+..++..+...|++++|++.|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 36788899999999999999999999999875 6678889999999999999999999999998765 556778889999
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCK 137 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 137 (493)
++...|++ +.|...++++... .+.+...+..+...+..
T Consensus 86 ~~~~~~~~-----------~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 86 AYYKQGDY-----------DEAIEYYQKALEL-DPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHTTCH-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCH-----------HHHHHHHHHHHHh-CCCcHHHHHHHHHHHHh
Confidence 99999999 5666777777664 23455566655555543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.3e-08 Score=72.58 Aligned_cols=89 Identities=16% Similarity=0.121 Sum_probs=59.1
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
.+.++..+..++..+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|+..++++.+.. +.+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 45566667777777777777777777777777654 4556666666677777777777777777766643 334555666
Q ss_pred HHHHHhccCCh
Q 043480 85 FISGLCEVKNF 95 (493)
Q Consensus 85 ll~~~~~~~~~ 95 (493)
+..++...|++
T Consensus 90 la~~~~~~~~~ 100 (133)
T 2lni_A 90 KAAALEAMKDY 100 (133)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHHhhH
Confidence 66666666666
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.7e-07 Score=72.22 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 043480 336 VTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGL 415 (493)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 415 (493)
..+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++.++.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345556666677777777777777776644 4566777777777777788888888887777652 33566777777778
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 043480 416 CKSSRVSEAMHLYEEMQIRGAHPDEVTFKLL--IGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
...|++++|...++++.+.... +...+..+ +..+...|++++|.+.++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888888887765322 44444333 3336677888888877776643
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-06 Score=75.54 Aligned_cols=168 Identities=10% Similarity=-0.003 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH-----hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCC--HH
Q 043480 302 SYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDV-----VTFTILIKAFLREGSSAMAEKLLNQMRGMNL---SPD--RI 371 (493)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 371 (493)
.+...+..+...|++++|.+.+....+....... ..+..+...+...|++++|...++...+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566677788888888888877665322111 1233455566778899999999888775321 122 45
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHh---C-CCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCC-CH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVE---Q-GITP--DVISYNALINGLCKSSRVSEAMHLYEEMQIRG----AHP-DE 440 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p-~~ 440 (493)
+++.+...|...|++++|...++++.+ . +..+ ...++..+..+|...|++++|+..+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788888999999999999999998872 2 1111 12578888889999999999999999875421 111 16
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHHc
Q 043480 441 VTFKLLIGGLVQEKKLELA-CRLWDQMMEK 469 (493)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 469 (493)
.+|..+..+|.+.|++++| ...++++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7788899999999999999 7777777643
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.2e-07 Score=68.73 Aligned_cols=97 Identities=13% Similarity=0.055 Sum_probs=64.9
Q ss_pred HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGL 450 (493)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 450 (493)
..+......|.+.|++++|...|++.++.. +.+...|..+..+|...|++++|+..+++.++.+.. +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 345556666677777777777777766642 335666667777777777777777777777664322 566677777777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 043480 451 VQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~ 469 (493)
...|++++|.+.++++++.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 7777777777777777764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=6.2e-08 Score=74.11 Aligned_cols=99 Identities=14% Similarity=-0.080 Sum_probs=57.0
Q ss_pred CHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043480 369 DRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIG 448 (493)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 448 (493)
+...+..+...+...|++++|...|+++++.. +.+...|..+..+|...|++++|+..|++....... +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 33445555555666666666666666665542 234555556666666666666666666666553221 4555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 043480 449 GLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~ 469 (493)
+|...|++++|...++++++.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666553
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-07 Score=80.76 Aligned_cols=171 Identities=8% Similarity=-0.020 Sum_probs=120.1
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh------hhHHHHHHHHHhcCChhHHHHHHHHhccCCC---CcC-
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS------IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF---SLT- 78 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~- 78 (493)
...+...+..+...|++++|.+.+++..+.. +... ..+..+...+...|++++|+..+++...... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 3445567888999999999999999888764 2222 2234456677888999999999999875421 111
Q ss_pred -hhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 043480 79 -PFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREP--DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG 155 (493)
Q Consensus 79 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (493)
..+++.+...|...|+++.|...++ +|+++++.. +..+ ...++..+...|...|++++|++.+++..+..
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~----kal~~~~~~---~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFE----QILKQLEAL---HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHHHHhc---CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4578889999999999976665553 333333321 1111 22588889999999999999999999876531
Q ss_pred ----CCC-CHHhHHHHHHHHhccCchhHH-HHHHHHHH
Q 043480 156 ----IKP-DNKACAALVVGLCGDGKVDLA-YELTVGAM 187 (493)
Q Consensus 156 ----~~~-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 187 (493)
... -..++..+..++...|++++| ...+++..
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 111 146677788888888888888 66666554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.78 E-value=5.2e-08 Score=74.10 Aligned_cols=93 Identities=10% Similarity=-0.082 Sum_probs=72.3
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhH
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTY 82 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (493)
...|.+...+..++..+.+.|++++|+..|+++...+ |.+...|..+..++...|++++|+..|++.+... +.++..+
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 89 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFP 89 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHH
Confidence 4455666777778888888888888888888888776 6677778888888888888888888888887765 4556677
Q ss_pred HHHHHHHhccCChhh
Q 043480 83 SRFISGLCEVKNFTL 97 (493)
Q Consensus 83 ~~ll~~~~~~~~~~~ 97 (493)
..+..++...|+++.
T Consensus 90 ~~lg~~~~~~g~~~~ 104 (142)
T 2xcb_A 90 FHAAECHLQLGDLDG 104 (142)
T ss_dssp HHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcCCHHH
Confidence 777788888888843
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.78 E-value=5.2e-06 Score=71.83 Aligned_cols=162 Identities=10% Similarity=0.049 Sum_probs=107.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cC----HhHHHHH
Q 043480 272 LKGLCNSNQLDKAYMFMVKKMEAKGLRDK-----VSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIE-LD----VVTFTIL 341 (493)
Q Consensus 272 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 341 (493)
+..+...|++++|...+.+........+. ..+..+...+...+++++|...+++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 55666777777777777777664322111 12233555555667888888888887763222 12 2257778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh----C-CCCC-CHHhHHHHHHHHHccCCHhHHHHHHHHHHhC----CCCCC-HhhHHH
Q 043480 342 IKAFLREGSSAMAEKLLNQMRG----M-NLSP-DRILYTTIIDCLCKSREIGTAYGVFLDMVEQ----GITPD-VISYNA 410 (493)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~ 410 (493)
...|...|++++|...++.+.+ . +..+ ...++..+...|...|++++|...+++.++. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 8888888888888888887763 1 1112 2236778888888889999998888887642 22222 567888
Q ss_pred HHHHHHhcCC-hhHHHHHHHHHHH
Q 043480 411 LINGLCKSSR-VSEAMHLYEEMQI 433 (493)
Q Consensus 411 l~~~~~~~g~-~~~a~~~~~~~~~ 433 (493)
+..++...|+ +++|...+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888884 5888888888753
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=6.7e-08 Score=73.94 Aligned_cols=105 Identities=11% Similarity=-0.029 Sum_probs=90.3
Q ss_pred ccccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 2 IQKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
+...|.+...+..+...+.+.|++++|+..|+++...+ |.+...|..+..++...|++++|+..|++++... +.++..
T Consensus 14 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~ 91 (148)
T 2vgx_A 14 NEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRF 91 (148)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHH
T ss_pred HcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchH
Confidence 34456778889999999999999999999999999886 7788999999999999999999999999998875 556788
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 82 YSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 82 ~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
+..+..++...|++ +.|+..|+.....
T Consensus 92 ~~~lg~~~~~~g~~-----------~~A~~~~~~al~~ 118 (148)
T 2vgx_A 92 PFHAAECLLQXGEL-----------AEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHTTCH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCH-----------HHHHHHHHHHHHH
Confidence 88999999999999 5566666666553
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.76 E-value=5.8e-08 Score=74.14 Aligned_cols=101 Identities=10% Similarity=0.034 Sum_probs=74.8
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCC
Q 043480 41 RVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKG 120 (493)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g 120 (493)
|.+...+..+...+.+.|++++|+..|++++... +.++..|..+..++...|++ +.|+..|++....
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~-----------~~Ai~~~~~al~l- 99 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQF-----------QQAADLYAVAFAL- 99 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccH-----------HHHHHHHHHHHhh-
Confidence 4455667777778888888888888888887765 45677777788888888888 5666677776664
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 121 REPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
.|.+...|..+..+|...|++++|+..|++..+.
T Consensus 100 ~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 100 GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445667777888888888888888888887775
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.76 E-value=8e-08 Score=84.94 Aligned_cols=124 Identities=15% Similarity=0.035 Sum_probs=66.5
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC---------------hhhHHHHHHHHHhcCChhHHHHHHHHhc
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF---------------SIDYNRFIGVLIRHSRFDLVQFYYQQMH 71 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 71 (493)
.+...+..+...|.+.|++++|+..|+++.+.. +.+ ...|..+..++.+.|++++|+..|++++
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556666666666666666666666666654 222 3455555555555555555555555555
Q ss_pred cCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHH
Q 043480 72 PLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKA 144 (493)
Q Consensus 72 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a 144 (493)
+.. +.+..++..+..++...|++ +.|+..|++..+. .+.+...+..+..++.+.|++++|
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~-----------~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDF-----------ELARADFQKVLQL-YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 543 33445555555555555555 3344444444443 222344555555555555555555
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-05 Score=69.68 Aligned_cols=229 Identities=9% Similarity=0.063 Sum_probs=108.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc-C-CHHHHH
Q 043480 209 GRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEV-MLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNS-N-QLDKAY 285 (493)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~ 285 (493)
+..++|+++++++...+ +-+...|+.--..+...| .+++++.+++.+.... +-+..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 33455555555555543 334444444444444444 3555555555555432 23334444433333333 3 444444
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 043480 286 MFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN 365 (493)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 365 (493)
..+.+++...+. +..+|+.-.-.+.+.|.++. .+ ...+.++++.++.+.+..
T Consensus 146 ~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~--------------~~-------------~~~~~eELe~~~k~I~~d 197 (349)
T 3q7a_A 146 EYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGR--------------IS-------------EAQWGSELDWCNEMLRVD 197 (349)
T ss_dssp HHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTC--------------CC-------------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhccccc--------------cc-------------hhhHHHHHHHHHHHHHhC
Confidence 444444443322 33333333322222222220 00 000125555555555543
Q ss_pred CCCCHHhHHHHHHHHHccCC-------HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh-----------------
Q 043480 366 LSPDRILYTTIIDCLCKSRE-------IGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRV----------------- 421 (493)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------------- 421 (493)
+-|...|+.....+.+.++ ++++++.+.+++... +-|...|+.+-..+.+.|+.
T Consensus 198 -p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~ 275 (349)
T 3q7a_A 198 -GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLN 275 (349)
T ss_dssp -TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC----
T ss_pred -CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCccccccccccccccccc
Confidence 3455555555555555444 456666666666542 33555565555555544443
Q ss_pred ---hHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 422 ---SEAMHLYEEMQIRG-----AHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 422 ---~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
........++...+ -.++...+..+++.|...|+.++|.++++.+.+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 276 PDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp ----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 12222222222211 0246778888888888888888888888887653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-07 Score=78.99 Aligned_cols=191 Identities=11% Similarity=-0.049 Sum_probs=107.0
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHH-------HHHHHhcCChhHHHHHHHHhccCCCCcCh---------
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRF-------IGVLIRHSRFDLVQFYYQQMHPLGFSLTP--------- 79 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------- 79 (493)
...+ ..++...|++.|.++.+.+ |-....|+.+ ..++.+.++..+++..+...... .|+.
T Consensus 14 ~~~~-~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g 89 (282)
T 4f3v_A 14 AVSM-LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGG 89 (282)
T ss_dssp HHHH-TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCT
T ss_pred Hhcc-cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCC
Confidence 3344 6899999999999999987 7778889888 67777777777887777776552 2321
Q ss_pred -------------hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 043480 80 -------------FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQ 146 (493)
Q Consensus 80 -------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 146 (493)
.....+..++...|++ ++|.+.|+.+... .|+......+...+.+.+++++|+.
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y-----------~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~ 156 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNY-----------ADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVID 156 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCH-----------HHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 1122334445555666 4444555544432 1222233344445556666666666
Q ss_pred HHHHHHHCCCCCC--HHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 147 AWEHMIENGIKPD--NKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFG--VLIYNALISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 147 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
.|+...... .|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.
T Consensus 157 ~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 157 QVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 665433321 110 22445555555556666666666655553322121 2233344445555555555555555555
Q ss_pred HC
Q 043480 223 WN 224 (493)
Q Consensus 223 ~~ 224 (493)
..
T Consensus 236 a~ 237 (282)
T 4f3v_A 236 TT 237 (282)
T ss_dssp HH
T ss_pred hc
Confidence 44
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-07 Score=69.65 Aligned_cols=95 Identities=14% Similarity=0.021 Sum_probs=82.8
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
|.+...+..+...+.+.|++++|+..|+++.+.+ |.+...|..+..++...|++++|+..+++.++.. +.+...+..+
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 78 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRK 78 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3466788899999999999999999999999986 7788999999999999999999999999999875 5567889999
Q ss_pred HHHHhccCChhhHHHHH
Q 043480 86 ISGLCEVKNFTLINILL 102 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~ 102 (493)
..++...|+++.|...+
T Consensus 79 g~~~~~~~~~~~A~~~~ 95 (126)
T 3upv_A 79 ATAQIAVKEYASALETL 95 (126)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHH
Confidence 99999999995554333
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.73 E-value=5.5e-07 Score=66.38 Aligned_cols=95 Identities=13% Similarity=0.174 Sum_probs=41.8
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 451 (493)
.+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|..+++++.+... .+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHH
Confidence 33444444444444444444444444321 22333444444444444444444444444443311 13444444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 043480 452 QEKKLELACRLWDQMME 468 (493)
Q Consensus 452 ~~g~~~~a~~~~~~~~~ 468 (493)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 44445555444444444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-07 Score=76.52 Aligned_cols=157 Identities=13% Similarity=0.004 Sum_probs=91.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCC-CCCHHhHHHHHHHHHccCCH
Q 043480 312 KGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRG----MNL-SPDRILYTTIIDCLCKSREI 386 (493)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~ 386 (493)
..|++++|.++++.+... .......+..+...+...|++++|...+++..+ .+. +.....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345666666644433321 222445566666666667777777666666553 111 12234566666777777777
Q ss_pred hHHHHHHHHHHhC----CCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--C-CC--CHHHHHHHHHHHHhcCC
Q 043480 387 GTAYGVFLDMVEQ----GITP--DVISYNALINGLCKSSRVSEAMHLYEEMQIRG--A-HP--DEVTFKLLIGGLVQEKK 455 (493)
Q Consensus 387 ~~a~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~p--~~~~~~~l~~~~~~~g~ 455 (493)
++|...+++..+. +-.| ....+..+...+...|++++|...+++..+.. . .+ ...++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777766542 1111 13346666777777788888877777764320 1 11 13345667777788888
Q ss_pred HHHHHHHHHHHHHc
Q 043480 456 LELACRLWDQMMEK 469 (493)
Q Consensus 456 ~~~a~~~~~~~~~~ 469 (493)
+++|.+.+++..+.
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877777654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.1e-07 Score=68.06 Aligned_cols=95 Identities=11% Similarity=0.046 Sum_probs=39.5
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 451 (493)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHHH
Confidence 33444444444444444444444444321 12333444444444444444444444444443211 13444444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 043480 452 QEKKLELACRLWDQMME 468 (493)
Q Consensus 452 ~~g~~~~a~~~~~~~~~ 468 (493)
..|++++|.+.++++.+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=3.3e-07 Score=68.26 Aligned_cols=115 Identities=12% Similarity=0.007 Sum_probs=48.6
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 451 (493)
.+..+...+...|+++.|...+++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHHH
Confidence 33344444444444444444444444321 22333444444444444444444444444443211 13444444444444
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhch
Q 043480 452 QEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQD 489 (493)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 489 (493)
..|++++|...++++.+.. +.+...+..+..++...|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 4444444444444444431 123334444444444333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.6e-07 Score=72.47 Aligned_cols=118 Identities=8% Similarity=0.128 Sum_probs=52.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHccCCH--hHH
Q 043480 313 GGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDC-LCKSREI--GTA 389 (493)
Q Consensus 313 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~a 389 (493)
.|++++|...++...+.. +.+...+..+...+...|++++|...|+...+.. +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 344455555555544432 1234444445555555555555555555444432 2334444444444 4444444 555
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 390 YGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 390 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
...++++++.. +.+...+..+..++...|++++|...++++.+
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555444431 22234444444444455555555555554444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-06 Score=73.74 Aligned_cols=196 Identities=10% Similarity=-0.051 Sum_probs=118.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhhHHHH-------HHHHHHcCCHHHHHHHHHHHHHcCCCcC---------------
Q 043480 277 NSNQLDKAYMFMVKKMEAKGLRDKVSYNTV-------IEAFCKGGQTRRAYKLFEGMRRRGIELD--------------- 334 (493)
Q Consensus 277 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 334 (493)
..++...|...|.++....+. ....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 456677777777776665443 44455544 2333333333344333333322 1111
Q ss_pred -------HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC--H
Q 043480 335 -------VVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD--V 405 (493)
Q Consensus 335 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~ 405 (493)
..........+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1122345556677888888888887776543 433355555557778888888888887665431 111 2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043480 406 ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD--EVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAA 480 (493)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 480 (493)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++... .|+...+..
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~a 246 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAA 246 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHH
Confidence 3566777788888888888888888775332243 346667777888888888888888888875 455443333
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-07 Score=80.37 Aligned_cols=96 Identities=15% Similarity=-0.011 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHH
Q 043480 266 YSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAF 345 (493)
Q Consensus 266 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (493)
..+..+...+...|++++|...|.+.+...+. +...|..+..++...|++++|...+++..+... .+...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 34444555555555555555555555554332 445555555555566666666666665555422 2445555555566
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 043480 346 LREGSSAMAEKLLNQMRG 363 (493)
Q Consensus 346 ~~~~~~~~a~~~~~~~~~ 363 (493)
...|++++|...|+...+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666655543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=8.8e-07 Score=65.58 Aligned_cols=97 Identities=12% Similarity=0.037 Sum_probs=66.4
Q ss_pred HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGL 450 (493)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 450 (493)
..+......+...|++++|...|++.++.. +.+...|..+..++...|++++|+..+++..+.+.. +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 445566666677777777777777776642 335666777777777777777777777777664322 566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 043480 451 VQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~ 469 (493)
...|++++|...++++++.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777777664
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=8.8e-07 Score=64.49 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=91.9
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
++..+..++..+...|++++|++.|+++.... |.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 45678889999999999999999999999876 6678889999999999999999999999998875 456778888999
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVID 133 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 133 (493)
++...|++ +.|...+++....+ +.+...+..+..
T Consensus 81 ~~~~~~~~-----------~~A~~~~~~~~~~~-~~~~~~~~~l~~ 114 (118)
T 1elw_A 81 ALEFLNRF-----------EEAKRTYEEGLKHE-ANNPQLKEGLQN 114 (118)
T ss_dssp HHHHTTCH-----------HHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HHHHHhhH-----------HHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 99999999 66778888877652 334445544433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.5e-05 Score=67.52 Aligned_cols=133 Identities=11% Similarity=0.060 Sum_probs=64.5
Q ss_pred HHcCChh-HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC----------hhHHHHHHHHhccCCCCcChhhHHHHHHH
Q 043480 20 VKAGLID-QAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSR----------FDLVQFYYQQMHPLGFSLTPFTYSRFISG 88 (493)
Q Consensus 20 ~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 88 (493)
.+.|.++ +|+++++.++..+ |.+..+|+.--.++...+. +++++.+++.++... +.+..+|+.-.-+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445554 5666666666665 4455555554444433332 345555555555443 3344445444444
Q ss_pred HhccCC--hhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC-HHHHHHHHHHHHHCCCCCCHHhHHH
Q 043480 89 LCEVKN--FTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKE-FDKAVQAWEHMIENGIKPDNKACAA 165 (493)
Q Consensus 89 ~~~~~~--~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (493)
+...+. + +.++.+++.+.+. .+.|..+|+.-..++...|. ++++++.++++.+..+ -|..+|+.
T Consensus 118 L~~l~~~~~-----------~~EL~~~~k~l~~-dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~ 184 (331)
T 3dss_A 118 LSRLPEPNW-----------ARELELCARFLEA-DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHY 184 (331)
T ss_dssp HHHCSSCCH-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHH
T ss_pred HhccCcccH-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHH
Confidence 444442 3 3444455555443 23344555555444444554 3555555555554432 24444444
Q ss_pred HH
Q 043480 166 LV 167 (493)
Q Consensus 166 l~ 167 (493)
..
T Consensus 185 R~ 186 (331)
T 3dss_A 185 RS 186 (331)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.5e-07 Score=66.77 Aligned_cols=101 Identities=11% Similarity=-0.053 Sum_probs=88.9
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCc--ChhhHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSL--TPFTYS 83 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~ 83 (493)
|.++.++..++..+...|++++|+..|+++.+.+ +.+...|..+..++...|++++|...+++..+.. +. +...+.
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 80 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWA 80 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHH
Confidence 5677888999999999999999999999999876 6678889999999999999999999999998874 34 578889
Q ss_pred HHHHHHhcc-CChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 84 RFISGLCEV-KNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 84 ~ll~~~~~~-~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
.+..++... |++ ++|++.+++....
T Consensus 81 ~l~~~~~~~~~~~-----------~~A~~~~~~~~~~ 106 (112)
T 2kck_A 81 AKADALRYIEGKE-----------VEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHTTCSSCS-----------HHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCH-----------HHHHHHHHHHhhc
Confidence 999999999 999 6777888888775
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.65 E-value=6.8e-07 Score=78.96 Aligned_cols=96 Identities=8% Similarity=-0.016 Sum_probs=60.9
Q ss_pred HHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043480 370 RILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGG 449 (493)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 449 (493)
...|..+..+|.+.|++++|...++++++.. +.+...|..+..+|...|++++|+..|+++.+.... +...+..+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 3566666666667777777777777766642 335566666667777777777777777776664222 56666666677
Q ss_pred HHhcCCHHHH-HHHHHHHH
Q 043480 450 LVQEKKLELA-CRLWDQMM 467 (493)
Q Consensus 450 ~~~~g~~~~a-~~~~~~~~ 467 (493)
+...|++++| ...++.|.
T Consensus 274 ~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777776666 34555554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.3e-07 Score=73.65 Aligned_cols=123 Identities=7% Similarity=0.171 Sum_probs=94.3
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHH-HhccCCh--
Q 043480 19 LVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISG-LCEVKNF-- 95 (493)
Q Consensus 19 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~-- 95 (493)
+...|++++|+..|++..+.+ |.+...|..+..++...|++++|...|+++.+.. +.++..+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 456789999999999988876 6778889999999999999999999999998765 4466777777777 7777886
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 043480 96 TLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG 155 (493)
Q Consensus 96 ~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (493)
+.| +..+++.... .+.+...+..+...+...|++++|...|++..+..
T Consensus 98 ~~A-----------~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQT-----------RAMIDKALAL-DSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHH-----------HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHH-----------HHHHHHHHHh-CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 544 4555555554 34467788888899999999999999999988763
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.1e-07 Score=69.01 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=86.5
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCC--CcC----h
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF--SLT----P 79 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~ 79 (493)
+.....+..+...+.+.|++++|++.|+++++.+ |.+...|+.+..+|...|++++|+..+++.++... .++ .
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 3456678899999999999999999999999986 77888999999999999999999999999987531 111 2
Q ss_pred hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHH
Q 043480 80 FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYT 129 (493)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 129 (493)
.+|..+..++...|++ +.|++.|++.+. ..|+.....
T Consensus 84 ~~~~~lg~~~~~~~~~-----------~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDL-----------SLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHHHHHHHHTTCH-----------HHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHHHHHHHHcCCH-----------HHHHHHHHHHHh--hCcCHHHHH
Confidence 3667777888888999 566677777665 345554443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.1e-07 Score=73.93 Aligned_cols=161 Identities=13% Similarity=-0.075 Sum_probs=108.2
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC----CC-CcChhhHHHHHHHHhccC
Q 043480 19 LVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL----GF-SLTPFTYSRFISGLCEVK 93 (493)
Q Consensus 19 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~ 93 (493)
....|++++|.+.++.+.. ++......+..+...+...|++++|...+++.+.. +. +....++..+...+...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3568999999996665544 33455778888999999999999999999998762 11 223467788888999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC---CCCC--HHhHHHH
Q 043480 94 NFTLINILLDNMDKLALEVFHKMVSKGREP--DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG---IKPD--NKACAAL 166 (493)
Q Consensus 94 ~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l 166 (493)
+++.|...++ +++++++ ..+..+ ....+..+...+...|++++|.+.+++..... ..+. ..++..+
T Consensus 81 ~~~~A~~~~~----~al~~~~---~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 81 NWDAARRCFL----EERELLA---SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp CHHHHHHHHH----HHHHHHH---HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHH----HHHHHHH---HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 9987776553 3334433 222122 24567888889999999999999998876421 0111 2234566
Q ss_pred HHHHhccCchhHHHHHHHHHH
Q 043480 167 VVGLCGDGKVDLAYELTVGAM 187 (493)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~ 187 (493)
...+...|++++|.+.+++..
T Consensus 154 a~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 154 GDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHH
Confidence 666777777777777666554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.4e-07 Score=70.37 Aligned_cols=104 Identities=8% Similarity=0.020 Sum_probs=90.4
Q ss_pred cccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhH
Q 043480 3 QKLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTY 82 (493)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (493)
...+.+...+..+...+.+.|++++|++.|+++++.+ +.+...|..+..++...|++++|+..|++.++.. +.+...|
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 82 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAW 82 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3456678889999999999999999999999999986 6788899999999999999999999999999875 5568889
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 83 SRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
..+..++...|++ +.|+..|++.+..
T Consensus 83 ~~lg~~~~~~g~~-----------~~A~~~~~~al~~ 108 (164)
T 3sz7_A 83 SRLGLARFDMADY-----------KGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHTTCH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCH-----------HHHHHHHHHHHHh
Confidence 9999999999999 5666777766664
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-06 Score=64.95 Aligned_cols=107 Identities=12% Similarity=0.173 Sum_probs=67.5
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGA--HPD----EVTFKL 445 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~~ 445 (493)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+++.++.+. .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556666667777777777777766642 33456666677777777777777777776654211 111 235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043480 446 LIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAAL 481 (493)
Q Consensus 446 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 481 (493)
+..++...|++++|.+.+++.++. .||+.+...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 677777777777777777777753 4666555443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.61 E-value=4.5e-07 Score=68.80 Aligned_cols=96 Identities=9% Similarity=-0.105 Sum_probs=53.1
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 451 (493)
.+..+...+...|++++|...|+++++.. +.+...|..+..++...|++++|+..|++....+.. ++..+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 34444555555566666666666555442 234455555555666666666666666665554221 4455555566666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 043480 452 QEKKLELACRLWDQMMEK 469 (493)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~ 469 (493)
..|++++|.+.++++++.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666665543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.2e-06 Score=66.86 Aligned_cols=97 Identities=11% Similarity=-0.064 Sum_probs=56.6
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 043480 335 VVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALING 414 (493)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 414 (493)
...+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|...+++.++.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4445555556666666666666666665543 3455556666666666666666666666665542 2235555566666
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 043480 415 LCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 415 ~~~~g~~~~a~~~~~~~~~ 433 (493)
|...|++++|...|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 6666666666666666554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.3e-06 Score=64.30 Aligned_cols=100 Identities=9% Similarity=-0.027 Sum_probs=64.8
Q ss_pred CCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043480 368 PDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLI 447 (493)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 447 (493)
.+...+..+...+...|++++|...|++.++.. +.+...|..+..++...|++++|...+++..+.+.. +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 445566666666666777777777776666542 334566666666677777777777777776664322 566666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 043480 448 GGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 448 ~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.++...|++++|...++++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777777777766654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-06 Score=65.41 Aligned_cols=116 Identities=11% Similarity=0.098 Sum_probs=71.9
Q ss_pred HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHHH
Q 043480 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGA--HPD----EVTFK 444 (493)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~ 444 (493)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666666677777777777666542 33555666666677777777777777776654321 112 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhch
Q 043480 445 LLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQD 489 (493)
Q Consensus 445 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 489 (493)
.+..++...|++++|.+.++++.+. .|+...+..+.......+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHH
Confidence 7777777777777777777777764 345555555555544433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.9e-07 Score=68.62 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=67.1
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCC--CcC----hh
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF--SLT----PF 80 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~ 80 (493)
..+..+..++..+...|++++|+..|+++.+.+ +.+...+..+...+...|++++|...++++..... .++ ..
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 345678888999999999999999999988875 66778888888899999999999999988876531 111 44
Q ss_pred hHHHHHHHHhccCCh
Q 043480 81 TYSRFISGLCEVKNF 95 (493)
Q Consensus 81 ~~~~ll~~~~~~~~~ 95 (493)
++..+..++...|++
T Consensus 81 ~~~~la~~~~~~~~~ 95 (131)
T 1elr_A 81 AYARIGNSYFKEEKY 95 (131)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccH
Confidence 555566666666666
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.8e-06 Score=64.94 Aligned_cols=97 Identities=8% Similarity=-0.020 Sum_probs=84.0
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
..+.++..+..++..+...|++++|+..|+++...+ +.+...|..+..++...|++++|...+++.++.. +.++..+.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 81 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHF 81 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHH
Confidence 456788899999999999999999999999999886 6778899999999999999999999999998875 55678899
Q ss_pred HHHHHHhccCChhhHHHHH
Q 043480 84 RFISGLCEVKNFTLINILL 102 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~ 102 (493)
.+..++...|+++.|...+
T Consensus 82 ~l~~~~~~~~~~~~A~~~~ 100 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANL 100 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHH
Confidence 9999999999995555433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.6e-06 Score=66.15 Aligned_cols=117 Identities=10% Similarity=-0.005 Sum_probs=92.5
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChh
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF---SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPF 80 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (493)
..+.+...+..++..+...|++++|++.|+++.+.. +.+ ...|..+..++...|++++|+..+++..+.. +.+..
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 100 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVK 100 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHH
Confidence 346678889999999999999999999999999875 333 6778889999999999999999999998864 44677
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 043480 81 TYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDG 134 (493)
Q Consensus 81 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 134 (493)
.+..+..++...|++ +.|...|++.... .+.+...+..+...
T Consensus 101 ~~~~~a~~~~~~~~~-----------~~A~~~~~~al~~-~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 101 ALYRRSQALEKLGRL-----------DQAVLDLQRCVSL-EPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHHTCH-----------HHHHHHHHHHHHH-CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCH-----------HHHHHHHHHHHHc-CCCcHHHHHHHHHH
Confidence 888899999999999 5666777777664 23344455444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-07 Score=76.72 Aligned_cols=131 Identities=9% Similarity=-0.049 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----------------HHhHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 043480 336 VTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPD----------------RILYTTIIDCLCKSREIGTAYGVFLDMVEQ 399 (493)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 399 (493)
..+..+...+...|++++|...|+...+.. +.+ ...+..+..+|...|++++|...+++.++.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344555556666666666666666666532 111 267777888888888888888888888875
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHc
Q 043480 400 GITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELAC-RLWDQMMEK 469 (493)
Q Consensus 400 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~ 469 (493)
. +.+...+..+..+|...|++++|...|++..+.... +...+..+..++...++.+++. ..+..+...
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC------------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 446677888888888888888888888888775322 6777777777777777776666 555555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=6.7e-07 Score=72.36 Aligned_cols=158 Identities=7% Similarity=-0.053 Sum_probs=83.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcCh---------------
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTP--------------- 79 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------- 79 (493)
.+......|++++|.+.|+...+.. +.....+..+...+...|++++|+..|++.++.. +.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHH
Confidence 3344445566666666655332221 2234455666666677777777777777766542 1121
Q ss_pred -hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 043480 80 -FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKP 158 (493)
Q Consensus 80 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 158 (493)
.++..+..++...|++ +.|+..+++.... .+.+...+..+..+|...|++++|++.|++..+.. +.
T Consensus 88 ~~~~~~la~~~~~~~~~-----------~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 154 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDY-----------PKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PN 154 (198)
T ss_dssp HHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHHHHHhcCH-----------HHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CC
Confidence 5666677777777777 4444555555543 33456677777777777777777777777776652 22
Q ss_pred CHHhHHHHHHHHhccCchhHHH-HHHHHHH
Q 043480 159 DNKACAALVVGLCGDGKVDLAY-ELTVGAM 187 (493)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~ 187 (493)
+...+..+..++...++.+++. ..+..+.
T Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 155 NLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHC----------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666555 4444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=4.3e-06 Score=60.72 Aligned_cols=95 Identities=9% Similarity=-0.001 Sum_probs=48.5
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 451 (493)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 34444445555555555555555554431 22344455555555555555555555555544321 13555555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 043480 452 QEKKLELACRLWDQMME 468 (493)
Q Consensus 452 ~~g~~~~a~~~~~~~~~ 468 (493)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=6.5e-07 Score=65.63 Aligned_cols=96 Identities=9% Similarity=-0.009 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGL 89 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 89 (493)
..+..++..+.+.|++++|+..|+++.+.+ |.+...|..+..++...|++++|+..|++.++.. +.+...+..+..++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 346678899999999999999999999986 7788999999999999999999999999999875 45677888999999
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHHHHHh
Q 043480 90 CEVKNFTLINILLDNMDKLALEVFHKMVS 118 (493)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~a~~~~~~~~~ 118 (493)
...|++ ++|+..+++.++
T Consensus 96 ~~~g~~-----------~~A~~~~~~al~ 113 (121)
T 1hxi_A 96 TNEHNA-----------NAALASLRAWLL 113 (121)
T ss_dssp HHHHHH-----------HHHHHHHHHHHC
T ss_pred HHcCCH-----------HHHHHHHHHHHH
Confidence 999999 566677777665
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00023 Score=61.56 Aligned_cols=235 Identities=6% Similarity=-0.029 Sum_probs=101.7
Q ss_pred hcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 043480 207 RTGR-IRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVM----------LDEAEKLVMEMESCGIEPDVYSYNQLLKGL 275 (493)
Q Consensus 207 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (493)
+.|. .++|+.+++.+...+ +-+...|+.--..+...+. ++++..+++.+.... +-+..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444 346677777776553 3344444433322222221 344444444444332 23444444444444
Q ss_pred HccC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHH
Q 043480 276 CNSN--QLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQ-TRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSA 352 (493)
Q Consensus 276 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 352 (493)
...+ .+++++..+.++....+. |..+|+.-.-.+...|. ++++++.++.+.+..+. |...|+-....+...+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 4444 245555555555544332 44444444444444444 34555555555444322 4444443333333221000
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-----------CCh
Q 043480 353 MAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKS-----------SRV 421 (493)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~ 421 (493)
.+ ++ ..-...+.++++++.+.+.+... +-|...|+.+-..+... +.+
T Consensus 197 ~~-------------~~--------~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l 254 (331)
T 3dss_A 197 DS-------------GP--------QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVL 254 (331)
T ss_dssp ---------------------------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHH
T ss_pred cc-------------cc--------ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHH
Confidence 00 00 00000023455555555555432 23444444333333332 345
Q ss_pred hHHHHHHHHHHHcCCCCC-HHHHHHHH---HHHHhcCCHHHHHHHHHHHHHc
Q 043480 422 SEAMHLYEEMQIRGAHPD-EVTFKLLI---GGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 422 ~~a~~~~~~~~~~~~~p~-~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
+++++.++++.+. .|| .-++..++ .+....|..+++...+.++.+.
T Consensus 255 ~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 255 QSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 6677777777663 343 22222221 1222356667777777777654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=9.5e-06 Score=61.75 Aligned_cols=99 Identities=10% Similarity=-0.030 Sum_probs=67.7
Q ss_pred CCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 043480 368 PDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD----VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTF 443 (493)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 443 (493)
.+...+..+...+...|++++|...|++.++. .|+ ...+..+..+|...|++++|+..+++..+.... +...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 34556666666777777777777777777664 344 456666777777777777777777777664222 56677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 444 KLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 444 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
..+..++...|++++|...++++++.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777777777777777764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.45 E-value=8.6e-06 Score=75.01 Aligned_cols=169 Identities=7% Similarity=-0.033 Sum_probs=105.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh----------------hhHHHHHHHHHhcCChhHHHHHHHHhccCCC
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS----------------IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF 75 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 75 (493)
--.-++.+.+.|++++|++.|..+.+....... ..+..++..|...|++++|.+.+..+...-.
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 334567789999999999999999886522111 1367788999999999999999998865311
Q ss_pred C-cCh----hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHH
Q 043480 76 S-LTP----FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREP-DVVTYTIVIDGLCKAKEFDKAVQAWE 149 (493)
Q Consensus 76 ~-~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 149 (493)
. ++. .+.+.+-..+...|+++.+...+.. +..... ..+..+ -..++..+...|...|++++|..+++
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 159 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEK----SIEFAK---REKRVFLKHSLSIKLATLHYQKKQYKDSLALIN 159 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHH----HHHHHH---HSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHH----HHHHHH---HhCccHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 1 111 1223333444556777666544432 222222 222222 24567778888888899999988888
Q ss_pred HHHHC--CCC--C-CHHhHHHHHHHHhccCchhHHHHHHHHHH
Q 043480 150 HMIEN--GIK--P-DNKACAALVVGLCGDGKVDLAYELTVGAM 187 (493)
Q Consensus 150 ~~~~~--~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 187 (493)
.+... +.. + ...++..++..|...|++++|...++...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 77542 111 1 12455555666666666666666665544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.44 E-value=4e-06 Score=60.20 Aligned_cols=95 Identities=11% Similarity=-0.072 Sum_probs=43.6
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP--DEVTFKLLIGG 449 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~ 449 (493)
.+..+...+...|++++|...+++.++.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 33444444444455555555554444431 2233444444444455555555555555544431 11 24444444555
Q ss_pred HHhc-CCHHHHHHHHHHHHH
Q 043480 450 LVQE-KKLELACRLWDQMME 468 (493)
Q Consensus 450 ~~~~-g~~~~a~~~~~~~~~ 468 (493)
+... |++++|.+.+++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 5555 555555555555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.2e-06 Score=61.55 Aligned_cols=96 Identities=8% Similarity=-0.024 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcC---hhhHHH
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFS---IDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLT---PFTYSR 84 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 84 (493)
.+..++..+.+.|++++|++.|+++.+.. |.+. ..+..+..++...|++++|...|+++.+.. +.+ +.++..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHH
Confidence 34557778888888888888888888765 3344 467777788888888888888888887754 222 455666
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
+..++...|++ +.|...|+.+...
T Consensus 82 la~~~~~~g~~-----------~~A~~~~~~~~~~ 105 (129)
T 2xev_A 82 LGLSQYGEGKN-----------TEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHTTCH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCH-----------HHHHHHHHHHHHH
Confidence 67777777777 4555566655553
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-06 Score=67.49 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=97.7
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC-c----
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCR-VF----SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFS-L---- 77 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~---- 77 (493)
...++..+...|...|++++|++.++++.+.... ++ ..++..+...+...|++++|...+++..+.... +
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 3567888999999999999999999988764211 11 136778889999999999999999998764101 1
Q ss_pred ChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043480 78 TPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGRE-PDVVTYTIVIDGLCKAKEFDKAVQAWEHMIE 153 (493)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (493)
....+..+..++...|+++.|...+++ +++..... +.+ ....++..+...+...|++++|.+.+++..+
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~----a~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLK----HLAIAQEL---KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH----HHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHc---cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 134677778888889999777755532 22322221 111 1234677777888888889888888887764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.7e-07 Score=87.04 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=94.5
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
+...+..++..+.+.|++++|++.|+++.+.. +.+...|..+..++.+.|++++|+..+++.++.. +.+..++..+..
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 82 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 82 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34445566677888899999999999998875 6678889999999999999999999999998875 456778888888
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHH--HhccCCHHHHHHHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDG--LCKAKEFDKAVQAWE 149 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 149 (493)
++...|++ ++|++.|++..+. .+.+...+..+..+ +.+.|++++|++.++
T Consensus 83 ~~~~~g~~-----------~eA~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 83 SNMALGKF-----------RAALRDYETVVKV-KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHTCH-----------HHHHHHHHHHHHH-STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHcCCH-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999 5556666666654 22344455555555 777888899988887
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=4.2e-06 Score=61.22 Aligned_cols=94 Identities=10% Similarity=-0.019 Sum_probs=62.4
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043480 373 YTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQ 452 (493)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 452 (493)
+..+...+.+.|++++|...+++.++.. +.+...|..+..++...|++++|+..+++..+.... +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3445556666777777777777776642 335666666777777777777777777777664322 56667777777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 043480 453 EKKLELACRLWDQMME 468 (493)
Q Consensus 453 ~g~~~~a~~~~~~~~~ 468 (493)
.|++++|...++++++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.4e-05 Score=70.23 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=15.7
Q ss_pred HHHHHccCChHHHHHHHHHHHHCC
Q 043480 237 LNYYCDEVMLDEAEKLVMEMESCG 260 (493)
Q Consensus 237 l~~~~~~~~~~~a~~~~~~~~~~~ 260 (493)
...+...|++++|++.|..+.+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~ 34 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKD 34 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC
Confidence 344566777777777777776543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.33 E-value=3e-06 Score=78.32 Aligned_cols=88 Identities=10% Similarity=0.077 Sum_probs=39.5
Q ss_pred hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 043480 80 FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD 159 (493)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 159 (493)
.+|..+..++.+.+++ +.|+..+++.+.. .+.+...|..+..+|...|++++|+..|++..+.. +.+
T Consensus 318 ~~~~nla~~~~~~g~~-----------~~A~~~~~~al~~-~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~ 384 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREY-----------TKAVECCDKALGL-DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQN 384 (457)
T ss_dssp HHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHhcCH-----------HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC
Confidence 3444455555555555 3333344443332 12234445555555555555555555555555432 112
Q ss_pred HHhHHHHHHHHhccCchhHHH
Q 043480 160 NKACAALVVGLCGDGKVDLAY 180 (493)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~ 180 (493)
..++..+..++...++.+++.
T Consensus 385 ~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 385 KAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444454455444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.5e-06 Score=63.32 Aligned_cols=86 Identities=9% Similarity=-0.037 Sum_probs=51.0
Q ss_pred cCCHhHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043480 383 SREIGTAYGVFLDMVEQG--ITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELAC 460 (493)
Q Consensus 383 ~~~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 460 (493)
.|++++|...|++.++.+ -+.+...+..+..+|...|++++|+..|++..+..+. +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 456666666666666542 1223445666666666677777777777766664322 4666666666777777777777
Q ss_pred HHHHHHHHc
Q 043480 461 RLWDQMMEK 469 (493)
Q Consensus 461 ~~~~~~~~~ 469 (493)
..++++++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777666654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.2e-05 Score=58.13 Aligned_cols=92 Identities=15% Similarity=0.010 Sum_probs=52.2
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 043480 376 IIDCLCKSREIGTAYGVFLDMVEQGITPDV---ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD---EVTFKLLIGG 449 (493)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~ 449 (493)
+...+...|++++|...|+++++.. +.+. ..+..+..++...|++++|...+++..+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3444555666666666666665531 1112 34555556666666666666666666554221 2 4555666666
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 043480 450 LVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~ 469 (493)
+...|++++|...++++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.4e-06 Score=78.79 Aligned_cols=134 Identities=10% Similarity=-0.015 Sum_probs=104.0
Q ss_pred HHHHHcCChhHHHHHHHHHhhC-----C--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC-----C--CCcChhhH
Q 043480 17 SNLVKAGLIDQAVHVFDEMTQS-----N--CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL-----G--FSLTPFTY 82 (493)
Q Consensus 17 ~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~ 82 (493)
..+..+|++++|+.++++.++. | .+....+++.++.+|..+|++++|..++++.++. | ++....++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4466889999999999887642 1 2233567888999999999999999999888653 2 22234678
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 83 SRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 83 ~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
+.|...|...|++++|..++ ++|+++++.....+.+....+.+.+-..+...+.+++|..+|.++++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~----~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMI----CKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHH----HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888 677888888765533333446677778888899999999999998763
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-05 Score=62.36 Aligned_cols=63 Identities=14% Similarity=0.058 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 406 ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
..|..+..+|.+.|++++|+..+++.++.+.. +...|..+..+|...|++++|...++++++.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 45666667777777777777777777664322 5667777777777777777777777777764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.27 E-value=6.9e-06 Score=73.35 Aligned_cols=85 Identities=8% Similarity=-0.037 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCC---------------CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSN---------------CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG 74 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (493)
..+..+...+.+.|++++|++.|+++++.. .+.+...|..+..++.+.|++++|+..++++++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346777888888888888888888877510 12233444445555555555555555555555432
Q ss_pred CCcChhhHHHHHHHHhccCCh
Q 043480 75 FSLTPFTYSRFISGLCEVKNF 95 (493)
Q Consensus 75 ~~~~~~~~~~ll~~~~~~~~~ 95 (493)
+.+..++..+..++...|++
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~ 323 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEY 323 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCH
T ss_pred -chhHHHHHHHHHHHHHccCH
Confidence 22344444445555555555
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.24 E-value=9.1e-06 Score=63.14 Aligned_cols=100 Identities=8% Similarity=-0.028 Sum_probs=83.1
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhC--------C---------CCCChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQS--------N---------CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQM 70 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 70 (493)
....+......+.+.|++++|+..|++++.. + .+.+...|..+..++.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3556788999999999999999999998875 1 0333467888999999999999999999999
Q ss_pred ccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 71 HPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 71 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
++.. +.++..|..+..++...|++ +.|+..|++....
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~-----------~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKL-----------DEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcH-----------HHHHHHHHHHHhc
Confidence 9875 56788899999999999999 5666777777664
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.24 E-value=9.1e-06 Score=62.92 Aligned_cols=133 Identities=14% Similarity=-0.015 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHhHHHHHHHHHccCCHhHHHHHHHHHHhC----CCCC-CHh
Q 043480 337 TFTILIKAFLREGSSAMAEKLLNQMRGMNL-SPD----RILYTTIIDCLCKSREIGTAYGVFLDMVEQ----GITP-DVI 406 (493)
Q Consensus 337 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~ 406 (493)
++..+...+...|++++|...++...+... .++ ..++..+...+...|++++|...+++..+. +.++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344455555556666666666555443210 011 135566666677777777777777766532 1111 134
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 407 SYNALINGLCKSSRVSEAMHLYEEMQIR----GAHP-DEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666777777888888888888776432 1111 2456777788888888888888888887653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.22 E-value=5.5e-05 Score=57.07 Aligned_cols=108 Identities=13% Similarity=-0.012 Sum_probs=71.4
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhCCCCCC-------------HhhHHHHHHHHHhcCChhHHHHHHHHHHHc-----C
Q 043480 374 TTIIDCLCKSREIGTAYGVFLDMVEQGITPD-------------VISYNALINGLCKSSRVSEAMHLYEEMQIR-----G 435 (493)
Q Consensus 374 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~ 435 (493)
......+.+.|++++|...|++.++. .|+ ...|..+..++.+.|++++|+..+++.++. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34444455556666666666665543 222 227777788888888888888888887763 1
Q ss_pred CCC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHH
Q 043480 436 AHP-DEVTF----KLLIGGLVQEKKLELACRLWDQMMEK-----GFTLDKTVSAALIE 483 (493)
Q Consensus 436 ~~p-~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~ 483 (493)
+.| +...| .....++...|++++|+..|++.++. |+.+........+.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 145 46677 78888888888888888888888764 55555555444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-05 Score=73.56 Aligned_cols=87 Identities=10% Similarity=0.001 Sum_probs=44.8
Q ss_pred HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 043480 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIGG 449 (493)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~ 449 (493)
..|..+..+|.+.|++++|...++++++.. +.+...|..+..+|...|++++|+..|+++.+. .| +...+..+..+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 445555555555555555555555555432 224455555555555555555555555555543 22 34455555555
Q ss_pred HHhcCCHHHHH
Q 043480 450 LVQEKKLELAC 460 (493)
Q Consensus 450 ~~~~g~~~~a~ 460 (493)
+.+.|+.+++.
T Consensus 395 ~~~~~~~~~a~ 405 (457)
T 1kt0_A 395 QKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.3e-06 Score=62.30 Aligned_cols=75 Identities=11% Similarity=0.012 Sum_probs=48.5
Q ss_pred HcCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChh
Q 043480 21 KAGLIDQAVHVFDEMTQSN--CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFT 96 (493)
Q Consensus 21 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 96 (493)
..|++++|+..|+++++.+ .|.+...+..+..++...|++++|+..|++.++.. +.++.++..+..++...|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHH
Confidence 3577777777777777753 24455667777777777777777777777777664 344666667777777777773
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.1e-05 Score=55.35 Aligned_cols=84 Identities=12% Similarity=0.113 Sum_probs=69.7
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
+.++..+..+...+.+.|++++|++.|+++.+.+ +.+...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l 83 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNL 83 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 4467789999999999999999999999999876 6678889999999999999999999999998864 3455566665
Q ss_pred HHHHhc
Q 043480 86 ISGLCE 91 (493)
Q Consensus 86 l~~~~~ 91 (493)
..++..
T Consensus 84 ~~~~~~ 89 (91)
T 1na3_A 84 GNAKQK 89 (91)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.19 E-value=4.4e-06 Score=58.70 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=61.4
Q ss_pred ccCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 043480 4 KLGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL 73 (493)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (493)
..|.++.++..+...|.+.|++++|++.|+++.+.+ |.+...|..+..++...|++++|+..|++.++.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 467899999999999999999999999999999987 667888999999999999999999999998764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.18 E-value=2.5e-05 Score=69.78 Aligned_cols=91 Identities=13% Similarity=0.018 Sum_probs=65.2
Q ss_pred CHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043480 369 DRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIG 448 (493)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 448 (493)
+...|..+..+|.+.|++++|...++++++.. +.+...+..+..+|...|++++|+..|+++.+.... +...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45667777777888888888888888887753 335667777778888888888888888887765322 5667777777
Q ss_pred HHHhcCCHHHHHH
Q 043480 449 GLVQEKKLELACR 461 (493)
Q Consensus 449 ~~~~~g~~~~a~~ 461 (493)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.17 E-value=5.3e-06 Score=76.99 Aligned_cols=119 Identities=12% Similarity=0.022 Sum_probs=59.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhH
Q 043480 309 AFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGT 388 (493)
Q Consensus 309 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 388 (493)
.+.+.|++++|.+.|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3445556666666666655542 2235555555555666666666666666555543 3445555555555555666666
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHH--HHhcCChhHHHHHHHH
Q 043480 389 AYGVFLDMVEQGITPDVISYNALING--LCKSSRVSEAMHLYEE 430 (493)
Q Consensus 389 a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 430 (493)
|...++++++.. +.+...+..+..+ +.+.|++++|++.+++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 666665555431 1122333333333 4455555555555543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00011 Score=55.03 Aligned_cols=112 Identities=10% Similarity=-0.058 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhHH
Q 043480 349 GSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCK----SSRVSEA 424 (493)
Q Consensus 349 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a 424 (493)
+++++|...|+...+.+ .+... +...|...+.+++|...|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45667777777777666 34433 5555666666777777777777764 55666677777766 6778888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 043480 425 MHLYEEMQIRGAHPDEVTFKLLIGGLVQ----EKKLELACRLWDQMMEKGF 471 (493)
Q Consensus 425 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 471 (493)
...|++..+.| ++..+..|...|.. .+++++|.+++++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88888777653 56677777777777 7788888888888877653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-05 Score=57.67 Aligned_cols=86 Identities=21% Similarity=0.167 Sum_probs=70.3
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcC-------h
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLT-------P 79 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~ 79 (493)
++...+..+...+.+.|++++|++.|+++.+.+ |.+...|..+..++...|++++|+..+++.++.. |+ .
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 78 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRS 78 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHH
Confidence 356788899999999999999999999999886 6788899999999999999999999999998864 33 3
Q ss_pred hhHHHHHHHHhccCCh
Q 043480 80 FTYSRFISGLCEVKNF 95 (493)
Q Consensus 80 ~~~~~ll~~~~~~~~~ 95 (493)
..+..+..++...|+.
T Consensus 79 ~~~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSV 94 (111)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhH
Confidence 4445555555555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.4e-06 Score=74.49 Aligned_cols=149 Identities=11% Similarity=0.057 Sum_probs=66.3
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
....+..+...+.+.|++++|+..|+++.... |+... +...++++++...+. ..+|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 44556777788888888888888888877653 22210 111222222222111 125566666
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHhHHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPD-NKACAAL 166 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 166 (493)
++...|++ +.|+..+++.+.. .+.+...|..+..+|...|++++|+..|++..+. .|+ ...+..+
T Consensus 239 ~~~~~g~~-----------~~A~~~~~~al~~-~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L 304 (338)
T 2if4_A 239 CLIKLKRY-----------DEAIGHCNIVLTE-EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRREL 304 (338)
T ss_dssp HHHTTTCC-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred HHHHcCCH-----------HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 66667776 4444555555443 2335566666667777777777777777766553 232 3333333
Q ss_pred HHH-HhccCchhHHHHHHHHHHhC
Q 043480 167 VVG-LCGDGKVDLAYELTVGAMKG 189 (493)
Q Consensus 167 ~~~-~~~~~~~~~a~~~~~~~~~~ 189 (493)
... ....+..+.+...|..+...
T Consensus 305 ~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 305 RALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC
Confidence 333 22334555666666666543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.08 E-value=3.2e-05 Score=58.31 Aligned_cols=93 Identities=9% Similarity=-0.096 Sum_probs=75.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCC------Chh-----hHHHHHHHHHhcCChhHHHHHHHHhccC----
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRV------FSI-----DYNRFIGVLIRHSRFDLVQFYYQQMHPL---- 73 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 73 (493)
...+......+.+.|++++|+..|+++++.++.. +.. .|+.+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3456778889999999999999999999865221 222 8899999999999999999999999886
Q ss_pred ---CCCcChhhH----HHHHHHHhccCChhhHHHHH
Q 043480 74 ---GFSLTPFTY----SRFISGLCEVKNFTLINILL 102 (493)
Q Consensus 74 ---~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~ 102 (493)
. +.+...| .....++...|++++|...+
T Consensus 91 ~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y 125 (159)
T 2hr2_A 91 GELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEF 125 (159)
T ss_dssp CCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHH
Confidence 4 3455677 88899999999996555444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00018 Score=67.99 Aligned_cols=130 Identities=11% Similarity=0.046 Sum_probs=70.0
Q ss_pred hHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC----------hhHHHHHHHHhccCCCCcChhhHHHHHHHHhccC--
Q 043480 26 DQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSR----------FDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVK-- 93 (493)
Q Consensus 26 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-- 93 (493)
++|++.++.+++.+ |.+..+|+.-..++...|+ +++++..++.+++.. +.+..+|+.-.-++.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 45577777777665 5555666666655555555 566666666665543 344455555555555555
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC-CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 043480 94 NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAK-EFDKAVQAWEHMIENGIKPDNKACAALVVGL 170 (493)
Q Consensus 94 ~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 170 (493)
++ +.+++.++++.+. .+-+..+|+.-..++.+.| .++++++.++++.+..+ -+..+|+.....+
T Consensus 124 ~~-----------~~el~~~~k~l~~-d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll 188 (567)
T 1dce_A 124 NW-----------ARELELCARFLEA-DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLL 188 (567)
T ss_dssp CH-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHH
T ss_pred cH-----------HHHHHHHHHHHhh-ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHH
Confidence 44 3444555555554 2334555555555555555 55556666555555432 2444454444433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0005 Score=65.06 Aligned_cols=170 Identities=8% Similarity=-0.042 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcC-
Q 043480 281 LDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQ----------TRRAYKLFEGMRRRGIELDVVTFTILIKAFLREG- 349 (493)
Q Consensus 281 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 349 (493)
.++|++.+.+++...+. +..+|+.--.++...|+ ++++++.++.+.+..++ +...|.--..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34556666666665443 44455554444444444 66666777766665433 5556666566666666
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC-CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---------
Q 043480 350 -SSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSR-EIGTAYGVFLDMVEQGITPDVISYNALINGLCKS--------- 418 (493)
Q Consensus 350 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------- 418 (493)
+++++...++.+.+.. +-+...|+.-...+.+.| .++++.+.+.++++.. +-|...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 5577777777776655 456666666666666666 6667777777666653 33556666555555442
Q ss_pred -----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043480 419 -----SRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKK 455 (493)
Q Consensus 419 -----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 455 (493)
+.++++++.++++....+. |...|..+...+.+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 3456677777776664322 56666666666666555
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.04 E-value=2e-05 Score=72.68 Aligned_cols=131 Identities=6% Similarity=-0.160 Sum_probs=92.0
Q ss_pred HHHhcCChhHHHHHHHHhccC-----C--CCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Q 043480 53 VLIRHSRFDLVQFYYQQMHPL-----G--FSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDV 125 (493)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~ 125 (493)
.+..+|++++|+.++++.++. | .+....+++.|...|...|++++|..++ +++++++++......+...
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~----~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYA----RRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHSCTTCHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHH----HHHHHHHHHHcCCCCHHHH
Confidence 355789999999999888753 2 1123467899999999999999999888 5667777777655333335
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHC-----CCC-CC-HHhHHHHHHHHhccCchhHHHHHHHHHH
Q 043480 126 VTYTIVIDGLCKAKEFDKAVQAWEHMIEN-----GIK-PD-NKACAALVVGLCGDGKVDLAYELTVGAM 187 (493)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 187 (493)
.+++.|...|...|++++|..+|++..+. |.. |+ ..+...+..++...+.+++|..++..+.
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999887642 311 11 1233344445555566666666665554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.96 E-value=8.2e-05 Score=53.66 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 389 AYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 389 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
|...|++.++.. +.+...+..+..++...|++++|+..+++..+.... +...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444431 223444555555555555555555555555443211 344555555555555555555555555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.92 E-value=3.6e-05 Score=67.91 Aligned_cols=149 Identities=12% Similarity=-0.023 Sum_probs=78.3
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 043480 126 VTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGF 205 (493)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (493)
..+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ..+|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 45666778888999999999999998764 344321 222333333332221 23667777788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHccCCHHHH
Q 043480 206 CRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKG-LCNSNQLDKA 284 (493)
Q Consensus 206 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a 284 (493)
.+.|++++|+..+++..... +.+...+..+..++...|++++|...|+...+.. +.+...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877654 4567777778888888888888888888876542 2233444444444 2334566677
Q ss_pred HHHHHHHHHcC
Q 043480 285 YMFMVKKMEAK 295 (493)
Q Consensus 285 ~~~~~~~~~~~ 295 (493)
...|.++....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 77777776653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00075 Score=50.37 Aligned_cols=110 Identities=13% Similarity=-0.099 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHH
Q 043480 140 EFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCR----TGRIRRAM 215 (493)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 215 (493)
++++|++.|++..+.| .|+.. +...|...+.++.|.+.|++..+.+ +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3445555555554443 11211 4444444444444555555544432 33444444444444 44555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHCC
Q 043480 216 AIKSFMKWNGCEPDLVTYNAILNYYCD----EVMLDEAEKLVMEMESCG 260 (493)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 260 (493)
++|++..+.| ++..+..+...|.. .+++++|...|+...+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555554433 33344444444444 445555555555544433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00012 Score=51.13 Aligned_cols=63 Identities=21% Similarity=0.117 Sum_probs=32.0
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043480 405 VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMME 468 (493)
Q Consensus 405 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (493)
...+..+..+|...|++++|+..|++..+.+.. +...|..+..+|...|++++|.+.+++.++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344445555555555555555555555443211 344555555555555555555555555544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.85 E-value=5.3e-05 Score=54.67 Aligned_cols=67 Identities=7% Similarity=-0.018 Sum_probs=36.7
Q ss_pred cCcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhcc
Q 043480 5 LGAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHP 72 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 72 (493)
.|.++.++..++..|...|++++|++.|+++.+.+ +.+...|..+..++...|++++|...|++..+
T Consensus 15 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 15 GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555543 34444555555555555555555555555543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=3.6e-05 Score=57.91 Aligned_cols=106 Identities=17% Similarity=0.167 Sum_probs=81.1
Q ss_pred HHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh----------hHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 043480 20 VKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRF----------DLVQFYYQQMHPLGFSLTPFTYSRFISGL 89 (493)
Q Consensus 20 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 89 (493)
-+.+.+++|++.+++..+.+ |.++..|+.+..++...+++ ++|+..|++.++.. +.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 45678999999999999987 88899999999999988875 49999999999875 45677889999999
Q ss_pred hccC----ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 043480 90 CEVK----NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVID 133 (493)
Q Consensus 90 ~~~~----~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 133 (493)
...| ++..+..-+ ++|++.|++.++ +.|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~----~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNF----DLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHH----HHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccH----HHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 8775 222222111 778889999888 5676665555544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=8e-05 Score=56.03 Aligned_cols=38 Identities=13% Similarity=-0.149 Sum_probs=19.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 043480 347 REGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSRE 385 (493)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 385 (493)
+.+.+++|...++...+.. +.+...|..+..++...++
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~ 51 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQ 51 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcc
Confidence 3344555555555555443 4455555555555555444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00042 Score=49.28 Aligned_cols=88 Identities=9% Similarity=-0.005 Sum_probs=51.5
Q ss_pred CHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-------HH
Q 043480 369 DRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPD-------EV 441 (493)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-------~~ 441 (493)
+...+..+...+...|++++|...|++.++.. +.+...+..+..++...|++++|+..+++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34455666666666777777777777666542 334556666666666777777777777766653 232 34
Q ss_pred HHHHHHHHHHhcCCHHHH
Q 043480 442 TFKLLIGGLVQEKKLELA 459 (493)
Q Consensus 442 ~~~~l~~~~~~~g~~~~a 459 (493)
.+..+..++...|+++.|
T Consensus 80 ~~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHhHhhh
Confidence 444444555544444433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0003 Score=48.06 Aligned_cols=69 Identities=9% Similarity=-0.044 Sum_probs=62.8
Q ss_pred cCcchhhHHHHHHHHHHcCC---hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 043480 5 LGAQRLIYRAQISNLVKAGL---IDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG 74 (493)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (493)
.|.|+.++..++.++...++ .++|..+|+++++.+ |.++.....+...+.+.|++++|+..|+++++..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 57899999999999976665 799999999999987 8888889999999999999999999999999875
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00035 Score=47.56 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=24.9
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 373 YTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
+..+...+...|++++|...+++.++.. +.+...+..+..++...|++++|...+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3334444444444444444444444321 12233344444444444444444444444433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.55 E-value=1.3e-05 Score=70.92 Aligned_cols=245 Identities=9% Similarity=0.106 Sum_probs=155.2
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
..|.+|+.|+.++.+.|...+|++.|-+ ..|+..|.-++.+..+.|++++-+..+.-.++. ..++..=+.|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi 123 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 123 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHH
Confidence 4678899999999999999999887633 245677889999999999999999999887765 45566678899
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC------------
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN------------ 154 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------ 154 (493)
-+|++.++..+.. +.+ ..||..-...+.+-|...|.++.|.-+|..+...
T Consensus 124 ~ayAk~~rL~elE---------------efl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~ 185 (624)
T 3lvg_A 124 FALAKTNRLAELE---------------EFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE 185 (624)
T ss_dssp HHHHTSCSSSTTT---------------STT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSG
T ss_pred HHHHhhCcHHHHH---------------HHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 9999998874321 111 2355555566666666666666666655443211
Q ss_pred --------CCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043480 155 --------GIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGC 226 (493)
Q Consensus 155 --------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 226 (493)
.-..+..||-.+-.+|...+.+.-|.-.--.++-.. .-...++..|...|.+++-+.+++.-....
T Consensus 186 yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglE- 259 (624)
T 3lvg_A 186 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLE- 259 (624)
T ss_dssp GGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence 012356778888888888887777765544444321 112235566777777777777777765332
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHH-HCCCC------CChhhHHHHHHHHHccCCHHHH
Q 043480 227 EPDLVTYNAILNYYCDEVMLDEAEKLVMEME-SCGIE------PDVYSYNQLLKGLCNSNQLDKA 284 (493)
Q Consensus 227 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~------~~~~~~~~l~~~~~~~~~~~~a 284 (493)
......|+.|.-.|++- ++++..+-++..- +.+++ -....|.-++-.|.+-.+++.|
T Consensus 260 rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 34556666666666654 3333333332211 11221 1234566666666666666655
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0032 Score=54.75 Aligned_cols=72 Identities=8% Similarity=-0.093 Sum_probs=44.3
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043480 402 TPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTV 477 (493)
Q Consensus 402 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 477 (493)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++.+. .|...+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 3455556655555555667777777776666643 56666666666666667777777766666654 444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0027 Score=55.22 Aligned_cols=150 Identities=9% Similarity=-0.067 Sum_probs=96.0
Q ss_pred CCCChhhHHHHHHHH--HhcCC---hhHHHHHHHHhccCCCCcChhhHHHHHHHHhcc---CChhhHHHHHHHHHHHHHH
Q 043480 40 CRVFSIDYNRFIGVL--IRHSR---FDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEV---KNFTLINILLDNMDKLALE 111 (493)
Q Consensus 40 ~~~~~~~~~~l~~~~--~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~a~~ 111 (493)
.|.+...|...+++. ...++ ..+|+.+|++.++.. +.....+..+.-++... +..... ....+ ..+.+
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~--~~~~l-~~a~~ 265 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEK--QLAAL-NTEID 265 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHH--HHHHH-HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchh--hHHHH-HHHHH
Confidence 466777888777553 33333 478889999988764 22334444444333211 111111 00110 22222
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCC
Q 043480 112 VFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKV 191 (493)
Q Consensus 112 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 191 (493)
....+ . ..+.+..+|..+...+...|++++|...+++.+..+ |+...+..+...+.-.|++++|.+.+.+....
T Consensus 266 a~~a~-~-~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL-- 339 (372)
T 3ly7_A 266 NIVTL-P-ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL-- 339 (372)
T ss_dssp HHHTC-G-GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHhc-c-cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 11111 1 235677888888877777899999999999999875 78888888888999999999999999998876
Q ss_pred CCChhhHH
Q 043480 192 EFGVLIYN 199 (493)
Q Consensus 192 ~~~~~~~~ 199 (493)
.|...+|.
T Consensus 340 ~P~~~t~~ 347 (372)
T 3ly7_A 340 RPGANTLY 347 (372)
T ss_dssp SCSHHHHH
T ss_pred CCCcChHH
Confidence 45555554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00099 Score=46.18 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=54.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNCRVFSI-DYNRFIGVLIRHSRFDLVQFYYQQMHPLG 74 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (493)
..+..+.+.|++++|++.|+++.+.+ +.+.. .|..+..++...|++++|+..|++.++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 46778899999999999999999876 66777 89999999999999999999999998875
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00065 Score=61.64 Aligned_cols=102 Identities=12% Similarity=0.036 Sum_probs=78.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCC-------CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC-----C--CCcCh
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSN-------CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL-----G--FSLTP 79 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~ 79 (493)
..+..+.++|++++|+.+++++++.. .+....+++.++.+|..+|++++|+.++++++.. | .+...
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 34566778899999999999987531 1223456888999999999999999999988753 2 12234
Q ss_pred hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 80 FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
.+++.|...|...|++++|..++ ++|+++++.....
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~----~~Al~i~~~~lG~ 407 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNL----RLAFDIMRVTHGR 407 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHH----HHHHHHHHHhcCC
Confidence 67889999999999999998888 6677888777543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00042 Score=62.81 Aligned_cols=94 Identities=3% Similarity=-0.177 Sum_probs=73.2
Q ss_pred hcCChhHHHHHHHHhccC-----C--CCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhH
Q 043480 56 RHSRFDLVQFYYQQMHPL-----G--FSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTY 128 (493)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 128 (493)
..|++++|+.++++.++. | .+....+++.|..+|...|++++|..++ +++++++++......+....++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~----~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYG----QKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHSCSSCHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHH----HHHHHHHHHHcCCCChHHHHHH
Confidence 357889999999887653 2 1122467889999999999999999888 5677778777654323234579
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHH
Q 043480 129 TIVIDGLCKAKEFDKAVQAWEHMIE 153 (493)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (493)
+.|...|..+|++++|+.+|++..+
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999999998764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00095 Score=60.57 Aligned_cols=99 Identities=10% Similarity=-0.002 Sum_probs=77.1
Q ss_pred HHHHHhcCChhHHHHHHHHhccCC---CCc----ChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 043480 51 IGVLIRHSRFDLVQFYYQQMHPLG---FSL----TPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREP 123 (493)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~ 123 (493)
+.-+..+|++++|+.++++.++.. +.| ...+++.+...|...|++++|..++ ++++++++.......+.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~----~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYG----TRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHH----HHHHHHHHHHSCSSCHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHH----HHHHHhHHHHcCCCChH
Confidence 445668899999999999987641 112 2467888999999999999999887 56677777775543233
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043480 124 DVVTYTIVIDGLCKAKEFDKAVQAWEHMIE 153 (493)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (493)
...+++.|...|...|++++|+.+|++..+
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345799999999999999999999988764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0073 Score=41.06 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=48.0
Q ss_pred CCCHhhHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 402 TPDVISYNALINGLCKSSR---VSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 402 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
+.+...+..+..++...++ .++|..++++..+.+.. +......+...+.+.|++++|...|+++++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4466667777777665544 67888888888775332 6777777778888888888888888888765
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00075 Score=61.13 Aligned_cols=94 Identities=9% Similarity=-0.033 Sum_probs=72.5
Q ss_pred HcCChhHHHHHHHHHhhC-----C--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC-----C--CCcChhhHHHHH
Q 043480 21 KAGLIDQAVHVFDEMTQS-----N--CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL-----G--FSLTPFTYSRFI 86 (493)
Q Consensus 21 ~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll 86 (493)
..|++++|+.++++.++. | .+....+++.+..+|..+|++++|..++++.++. | ++....+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357899999999987652 2 1223467888999999999999999999998753 2 222346789999
Q ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHh
Q 043480 87 SGLCEVKNFTLINILLDNMDKLALEVFHKMVS 118 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~ 118 (493)
..|...|++++|..++ ++|+++++....
T Consensus 390 ~~~~~qg~~~eA~~~~----~~Al~i~~~~lG 417 (433)
T 3qww_A 390 RLYMGLENKAAGEKAL----KKAIAIMEVAHG 417 (433)
T ss_dssp HHHHHTTCHHHHHHHH----HHHHHHHHHHTC
T ss_pred HHHHhccCHHHHHHHH----HHHHHHHHHHcC
Confidence 9999999999998888 567777777644
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0039 Score=46.35 Aligned_cols=91 Identities=15% Similarity=0.085 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 043480 387 GTAYGVFLDMVEQGITPDVISYNALINGLCKSS---RVSEAMHLYEEMQIRGAHP--DEVTFKLLIGGLVQEKKLELACR 461 (493)
Q Consensus 387 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~ 461 (493)
..+.+-|.+..+.|. ++..+...+..++++++ +.++++.+++...+.+ .| +...+..|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344555555555442 45555556666666666 4446666666665543 23 34555556666666667777777
Q ss_pred HHHHHHHcCCCCCHHHHHHH
Q 043480 462 LWDQMMEKGFTLDKTVSAAL 481 (493)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~l 481 (493)
.++.+++. .|+..--..+
T Consensus 93 y~~~lL~i--eP~n~QA~~L 110 (152)
T 1pc2_A 93 YVRGLLQT--EPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHH
Confidence 66666653 5554444433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.021 Score=47.54 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhCCCCCC---HhhHHHHHHHHhcc-----CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcc-Cchh
Q 043480 107 KLALEVFHKMVSKGREPD---VVTYTIVIDGLCKA-----KEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGD-GKVD 177 (493)
Q Consensus 107 ~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 177 (493)
..|...+++.++. .|+ -..|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 5777888888874 555 55888888889884 99999999999999864322467777888888884 9999
Q ss_pred HHHHHHHHHHhCCCC--CChhhHH
Q 043480 178 LAYELTVGAMKGKVE--FGVLIYN 199 (493)
Q Consensus 178 ~a~~~~~~~~~~~~~--~~~~~~~ 199 (493)
.+.+.+++.+..... |+....+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH
Confidence 999999999987655 5544444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0041 Score=43.52 Aligned_cols=69 Identities=3% Similarity=-0.191 Sum_probs=58.3
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCC------CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSN------CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLG 74 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (493)
.-++..+..|+..+.+.|++..|...|+.+.+.- ..+...++..+..++.+.|+++.|+..++++.+..
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3567788899999999999999999999987641 13456778899999999999999999999998763
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.062 Score=38.45 Aligned_cols=140 Identities=11% Similarity=0.040 Sum_probs=93.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHH
Q 043480 311 CKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAY 390 (493)
Q Consensus 311 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 390 (493)
.-.|..++..++..+..+. .+..-++.++--....-+-+-..+.++.+-+. .| ...+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHH
Confidence 3457777777777776654 24444555554444444444444444444321 11 13456666666
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043480 391 GVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKG 470 (493)
Q Consensus 391 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 470 (493)
..+-.+- .+...+...+..+...|+-+.-.+++..+.. +-+|++.....+..+|.+.|+..+|.+++.++.+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 5554432 2445667778888999999999999998644 356789999999999999999999999999999998
Q ss_pred CC
Q 043480 471 FT 472 (493)
Q Consensus 471 ~~ 472 (493)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 75
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.81 E-value=0.46 Score=47.01 Aligned_cols=272 Identities=11% Similarity=-0.014 Sum_probs=134.9
Q ss_pred HhccCchhHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C-----CCHHHHHHHHHHH
Q 043480 170 LCGDGKVDLAYELTVGAMKGKVEFGVL--IYNALISGFCRTGRIRRAMAIKSFMKWNGC--E-----PDLVTYNAILNYY 240 (493)
Q Consensus 170 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~ll~~~ 240 (493)
....|+.+++...+...+......+.. .-..+.-+....|..+++..++.......- . +....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 345566666666665544311011211 222233344555655567776666553210 0 1111122222233
Q ss_pred HccCC-hHHHHHHHHHHHHCCCCCChhh--HH--HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC
Q 043480 241 CDEVM-LDEAEKLVMEMESCGIEPDVYS--YN--QLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQ 315 (493)
Q Consensus 241 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~--~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 315 (493)
+-.|. -+++...+..+.... +... .. ++...+.-.|+.+....++..+.+.. ..+..-...+.-++...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 33332 234555555554421 2111 11 23334456677766666666655432 1122222233334446788
Q ss_pred HHHHHHHHHHHHHcCCCcCHhHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHH
Q 043480 316 TRRAYKLFEGMRRRGIELDVVTF--TILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVF 393 (493)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 393 (493)
.+.+..+.+.+... ..|....- ..+.-+|+..|+.....+++..+.+.. ..+..-...+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888888887754 12222222 233446677888888877888887642 233443344444455567777777777
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043480 394 LDMVEQGITPDVISYNALINGLCKSSRV-SEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 394 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 451 (493)
+.+.+.+ .|....-..+.-+....|+. .+++.++..+.. .+|..+-..-+-++.
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 6666543 44444334444444555554 567788888864 345444443333333
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.085 Score=52.72 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=13.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043480 335 VVTFTILIKAFLREGSSAMAEKLLNQM 361 (493)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 361 (493)
...|..+...+.+.++++.|++.|..+
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344444455555555555555544444
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.085 Score=37.78 Aligned_cols=58 Identities=12% Similarity=0.231 Sum_probs=23.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCC
Q 043480 342 IKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQG 400 (493)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 400 (493)
+......|..++-.+++..+.... +|++...-.+..+|.+.|+..+|.+++.++-+.|
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 333344444444444444432211 3344444444444444444444444444444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.022 Score=39.11 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=37.5
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 376 IIDCLCKSREIGTAYGVFLDMVEQGITPDVI-SYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 376 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
....+...|++++|...++++++.. +.+.. .+..+..++...|++++|...|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445566677777777777776642 22445 6666667777777777777777777664
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.032 Score=41.46 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC---CHhHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCChhHHHH
Q 043480 352 AMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSR---EIGTAYGVFLDMVEQGITP--DVISYNALINGLCKSSRVSEAMH 426 (493)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~ 426 (493)
..+.+.|....+.+ +++..+...+..++++.+ +.+++..+++...+.. .| +...+-.|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34455555555544 366666666666777766 4557777777776653 23 24455556666777777777777
Q ss_pred HHHHHHHc
Q 043480 427 LYEEMQIR 434 (493)
Q Consensus 427 ~~~~~~~~ 434 (493)
.++.+.+.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777763
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.041 Score=38.32 Aligned_cols=62 Identities=8% Similarity=-0.043 Sum_probs=29.0
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCC------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQG------ITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
-+-.+...+...|++..|...|+...+.- -.+...++..|..++.+.|+++.|..+++++.+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33444455555555555555555544320 012233444455555555555555555555544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.031 Score=46.59 Aligned_cols=94 Identities=11% Similarity=0.027 Sum_probs=53.5
Q ss_pred HhHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCH
Q 043480 386 IGTAYGVFLDMVEQGITPD---VISYNALINGLCKS-----SRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQE-KKL 456 (493)
Q Consensus 386 ~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~ 456 (493)
...|...+++.++. .|+ ...|..+...|... |+.++|.++|++.++.+..-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34555556666653 344 34556666666653 66667777776666642221355666666666663 666
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHH
Q 043480 457 ELACRLWDQMMEKGFT--LDKTVSAAL 481 (493)
Q Consensus 457 ~~a~~~~~~~~~~~~~--~~~~~~~~l 481 (493)
++|.+.+++.++.... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 6666666666665444 554444433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.045 Score=40.10 Aligned_cols=116 Identities=9% Similarity=0.108 Sum_probs=67.5
Q ss_pred CCCHHhHHHHHHHHHccCCH------hHHHHHHHHHHhCCCCCCHh-hHHHHHH------HHHhcCChhHHHHHHHHHHH
Q 043480 367 SPDRILYTTIIDCLCKSREI------GTAYGVFLDMVEQGITPDVI-SYNALIN------GLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~a~~~~~~~~~ 433 (493)
+.|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|...+. .+...+|.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34555555555555555665 5666667766654 455421 1111111 11234778888888888765
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 434 RGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAI 485 (493)
Q Consensus 434 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 485 (493)
.+-+- ...|.....--.+.|+.+.|.+++.+.+..+-+ +...+...++-+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~nl 138 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRNL 138 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHhh
Confidence 42222 677777777777788888888888888876533 344444444433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.1 Score=38.26 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 043480 314 GQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN 365 (493)
Q Consensus 314 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 365 (493)
+++++|.++|+.+.+.+-.- ...|......-.+.|+...|.+++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 45555555555554432121 3333333344445555555555555555444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0003 Score=62.49 Aligned_cols=187 Identities=14% Similarity=0.125 Sum_probs=89.6
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
.|+..|...+.+.-+.|.+++-++.+.-+++.. .++.+=+.++-+|++.++..+-.+++ . .||..-...+.
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl----~---~~N~A~iq~VG 151 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVG 151 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTT----S---CCSSSCTHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHH----c---CCCcccHHHHH
Confidence 466677788888888888888888887666543 33344456666777666654432221 1 23333334444
Q ss_pred HHHhccCChhhHHHHHHHHHH---HH-----HHHHHHHHhC-CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 043480 87 SGLCEVKNFTLINILLDNMDK---LA-----LEVFHKMVSK-GREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIK 157 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~---~a-----~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (493)
.-|...|.++.|.-++..+.. .| +.-|+..+.. .-..++.+|-.+-.+|...+.|.-|.-.=-.++-.
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh--- 228 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH--- 228 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---
Confidence 444444444333322222110 00 0000000000 01224556666666666666665554333333221
Q ss_pred CCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 043480 158 PDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRT 208 (493)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 208 (493)
|| -+..++..|-..|.+++-+.+++...... ......|+.|.-.|++-
T Consensus 229 ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 229 AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS
T ss_pred HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc
Confidence 11 12234444555566666666555554321 33445555555555543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.049 Score=38.90 Aligned_cols=82 Identities=15% Similarity=0.071 Sum_probs=44.7
Q ss_pred HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 043480 386 IGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSE---AMHLYEEMQIRGAHP--DEVTFKLLIGGLVQEKKLELAC 460 (493)
Q Consensus 386 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~ 460 (493)
+..+.+-|.+....|. |+..+--.+..++.++.+... ++.+++...+.+ .| +......|.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444444444332 455555555666666655444 666666655532 12 3344455556666666666666
Q ss_pred HHHHHHHHc
Q 043480 461 RLWDQMMEK 469 (493)
Q Consensus 461 ~~~~~~~~~ 469 (493)
+.++.+++.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.23 Score=37.93 Aligned_cols=98 Identities=12% Similarity=0.163 Sum_probs=50.4
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 043480 136 CKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAM 215 (493)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 215 (493)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|....+ +..+.-.|...|+.+...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3456666666665544 1455666666666666666666666655442 334444455555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 043480 216 AIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVM 254 (493)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 254 (493)
++-+.....| . ++.....+.-.|+++++.++|.
T Consensus 81 kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 81 KMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444333 1 2222233334555555555553
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.29 Score=48.84 Aligned_cols=98 Identities=9% Similarity=0.069 Sum_probs=54.2
Q ss_pred hccCCHHHHHH-HHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 043480 136 CKAKEFDKAVQ-AWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRA 214 (493)
Q Consensus 136 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 214 (493)
...+++++|.+ ++.. + |+......++..+.+.|.++.|.++.+. . ..-.......|+++.|
T Consensus 610 ~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHH
Confidence 34667777655 3311 1 1122235556666666777766654321 1 1112334556777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 043480 215 MAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEME 257 (493)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 257 (493)
.++.+.+ .+...|..+...+.+.++++.|++.|..+.
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 7664332 355667777777777777777777776654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.61 Score=35.66 Aligned_cols=99 Identities=12% Similarity=0.179 Sum_probs=53.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHH
Q 043480 311 CKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAY 390 (493)
Q Consensus 311 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 390 (493)
...|+++.|.++.+.+ .+...|..+.......|+++-|++.|..... +..+.-.|...|+.+.-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3456666666665544 1455666666666666666666666655542 334444445556655555
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 043480 391 GVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEE 430 (493)
Q Consensus 391 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (493)
.+-+.....| -++....++...|+++++.+++.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444332 133334445555666666666644
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.12 Score=36.84 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=67.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhH---HHHHHHHhccCCCCc--ChhhHHHHHHH
Q 043480 14 AQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDL---VQFYYQQMHPLGFSL--TPFTYSRFISG 88 (493)
Q Consensus 14 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~ll~~ 88 (493)
.++........+..+.+-|++....| .++..+-..+..+++++++... ++.+++...+.+ .| .......|.-+
T Consensus 6 ~~l~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 6 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHH
Confidence 34455555566777888888777766 5777777778889998887765 999999998864 23 34555667778
Q ss_pred HhccCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 89 LCEVKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
+.+.|++ ..|++.++.+++.
T Consensus 84 ~yklg~Y-----------~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 84 NYRLKEY-----------EKALKYVRGLLQT 103 (126)
T ss_dssp HHHTTCH-----------HHHHHHHHHHHHH
T ss_pred HHHhhhH-----------HHHHHHHHHHHHh
Confidence 9999999 5666777777663
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=94.29 E-value=2.9 Score=43.50 Aligned_cols=85 Identities=13% Similarity=0.103 Sum_probs=52.2
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHH
Q 043480 126 VTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN----KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNAL 201 (493)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (493)
.-|..++..+.+.+.++.+.++-....+...+.+. ..|..++..+...|++++|...+..+..... -..+...|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 45677777788888888888777666543211111 2456677777777888877777766655432 23455556
Q ss_pred HHHHHhcCCHH
Q 043480 202 ISGFCRTGRIR 212 (493)
Q Consensus 202 ~~~~~~~~~~~ 212 (493)
+...+..+..+
T Consensus 978 V~~lce~~~~~ 988 (1139)
T 4fhn_B 978 VNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHCCHH
T ss_pred HHHHHhCCChh
Confidence 55555555433
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.53 Score=41.98 Aligned_cols=56 Identities=13% Similarity=0.098 Sum_probs=27.8
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043480 375 TIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEM 431 (493)
Q Consensus 375 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 431 (493)
.++..+...|+++++...+..+... .+.+...|..+|.++.+.|+..+|++.|+++
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444455555555555554433 1334445555555555555555555555544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.15 Score=45.52 Aligned_cols=69 Identities=12% Similarity=0.106 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC-----CCCcChhh
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL-----GFSLTPFT 81 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 81 (493)
...++..+.+.|++++|+..+..+...+ |.+...|..++.++.+.|+..+|++.|+++.+. |+.|.+.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4456677778888888888888887775 677778888888888888888888888887552 77777654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.33 E-value=1.4 Score=31.70 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=47.4
Q ss_pred CCCHhhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043480 402 TPDVISYNALINGLCKSSRV---SEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVS 478 (493)
Q Consensus 402 ~p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 478 (493)
.|+..+--.+..++.++.+. .+++.+++.+.+.+..-....+..|.-++.+.|++++|.+..+.+++. .|+..-.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCHHH
Confidence 45555555566666666543 356777777765442113556666777777778888887777777753 5654443
Q ss_pred HH
Q 043480 479 AA 480 (493)
Q Consensus 479 ~~ 480 (493)
..
T Consensus 115 ~~ 116 (134)
T 3o48_A 115 GA 116 (134)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.37 Score=46.66 Aligned_cols=128 Identities=13% Similarity=-0.005 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCC-hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHHhccC------CCCc-Chh---
Q 043480 13 RAQISNLVKAGL-IDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSR-FDLVQFYYQQMHPL------GFSL-TPF--- 80 (493)
Q Consensus 13 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~~--- 80 (493)
..|+..+...|+ .+.|+.+|+++...++..+......++..+...++ --+|.+++.+.++. ...+ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 444554444555 47788888888776522221112223333322222 12445555444321 0111 110
Q ss_pred -------hHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 043480 81 -------TYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMI 152 (493)
Q Consensus 81 -------~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (493)
....=.+.+...|++ +.|+++-++.+.. .+-+..+|..|..+|...|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~-----------elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDY-----------ELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcH-----------HHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 111112334456666 4555555555554 34456778888888888888888887777764
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.98 E-value=1.9 Score=29.03 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 388 TAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 388 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555555555555555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.78 E-value=7.4 Score=35.35 Aligned_cols=256 Identities=9% Similarity=0.055 Sum_probs=136.5
Q ss_pred cCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH----Hcc
Q 043480 208 TGRIRRAMAIKSFMKWN-----GCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGL----CNS 278 (493)
Q Consensus 208 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 278 (493)
.++++.|++.+-.+.+. ...........++..|...++++...+.+..+.+..- ........+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~-qlk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHG-QLKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTT-TSHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhcC
Confidence 36788888776555432 2345567778888999999999988887766654321 1222333333322 222
Q ss_pred CCHHHHHHHHHHHHHcC-CCCC---------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-----HhHHHHHHH
Q 043480 279 NQLDKAYMFMVKKMEAK-GLRD---------KVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELD-----VVTFTILIK 343 (493)
Q Consensus 279 ~~~~~a~~~~~~~~~~~-~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~ 343 (493)
...+.... ......- .... ......|...+...|++.+|.+++..+...-...+ ...+...++
T Consensus 108 ~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 32222111 1111110 0001 11234567777888888888888888764311111 234566677
Q ss_pred HHHHcCCHHHHHHHHHHHHh----CCCCCC--HHhHHHHHHHHHccCCHhHHHHHHHHHHhC-CCCCCHhhHH----HHH
Q 043480 344 AFLREGSSAMAEKLLNQMRG----MNLSPD--RILYTTIIDCLCKSREIGTAYGVFLDMVEQ-GITPDVISYN----ALI 412 (493)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~----~l~ 412 (493)
.|...+++..|..++..+.. ...+|+ ...+...+..+...+++.+|...|.++.+. ...-+...+. .++
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v 265 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIV 265 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 78888888888888877642 221222 235566677777788888888877777542 0111222221 122
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHH
Q 043480 413 NGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQE--KKLELACRLWDQM 466 (493)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~ 466 (493)
.+..-.+....-..++.......--++...+..++.+|... .+++.+.+.++..
T Consensus 266 ~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 266 YFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 22222222222223333332221224567777777777653 4566655554433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.59 E-value=2.2 Score=28.81 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=53.2
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 420 RVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAI 485 (493)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 485 (493)
|.=+..+-++.+...++-|++.+....+++|.+.+|+..|.++++-.+.+- .....+|..+++-+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHHH
Confidence 455677888888888899999999999999999999999999999998763 23345677776654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.53 E-value=7.9 Score=35.18 Aligned_cols=244 Identities=12% Similarity=0.068 Sum_probs=126.7
Q ss_pred cCChHHHHHHHHHHHHC-----CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH----HHc
Q 043480 243 EVMLDEAEKLVMEMESC-----GIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAF----CKG 313 (493)
Q Consensus 243 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 313 (493)
.|+++.|.+.+..+.+. +...+......++..|...|+++...+.+..+....+. .......+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 36788888777666532 23445566777888888889888887766655543322 222223333322 222
Q ss_pred CCHHHHH--HHHHHHHH--cC-CCc---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCC---HHhHHHHHHHH
Q 043480 314 GQTRRAY--KLFEGMRR--RG-IEL---DVVTFTILIKAFLREGSSAMAEKLLNQMRG--MNLSPD---RILYTTIIDCL 380 (493)
Q Consensus 314 ~~~~~a~--~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~---~~~~~~l~~~~ 380 (493)
...+... .+.+.... .| +-. .......|...+...|++.+|..++..+.. .+..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2222111 11111110 00 111 111234566677778888888888887763 221111 23556667777
Q ss_pred HccCCHhHHHHHHHHHHh----CCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHH----HHHHHH
Q 043480 381 CKSREIGTAYGVFLDMVE----QGITPD--VISYNALINGLCKSSRVSEAMHLYEEMQIR-GAHPDEVTF----KLLIGG 449 (493)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~----~~l~~~ 449 (493)
...+++..|..+++++.. ....|+ ...+...+..+...+++.+|-+.|.++.+. ....|...+ ..++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 778888888888777642 211222 134556666667778888877777666431 111122222 222223
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 043480 450 LVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHL 487 (493)
Q Consensus 450 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 487 (493)
..-.+....-..++........-++...+..++++|..
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~ 305 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTT 305 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHh
Confidence 33333444444444444444333455666666666654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.37 E-value=1.2 Score=33.40 Aligned_cols=56 Identities=7% Similarity=-0.079 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCC-CCcCh-------hhHHHHHHHHhccCChhhHHHHH
Q 043480 47 YNRFIGVLIRHSRFDLVQFYYQQMHPLG-FSLTP-------FTYSRFISGLCEVKNFTLINILL 102 (493)
Q Consensus 47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~ 102 (493)
+..-+..+...|.|+.|+-+..-+.... ..|+. .++..+.+++...+++..|...+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y 86 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKY 86 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3334555666667776666665544321 11221 24455566666777775555544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.21 E-value=1.6 Score=42.36 Aligned_cols=49 Identities=12% Similarity=0.054 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhch
Q 043480 439 DEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAIHLQD 489 (493)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 489 (493)
+..-|..|.....+.+++++|.+.|+..+.. +-+...+..|++-|...+
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 5666889999999999999999999999975 568899999999997755
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.06 E-value=3.4 Score=30.11 Aligned_cols=74 Identities=18% Similarity=0.166 Sum_probs=44.4
Q ss_pred CCCHhhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043480 402 TPDVISYNALINGLCKSSRV---SEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTV 477 (493)
Q Consensus 402 ~p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 477 (493)
.|+..+--.+..++.++.+. .+++.+++.+...+..-.......|.-++.+.|++++|++..+.+++. .|+..-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHH
Confidence 45555555566666666543 356666766665432223455556666777777777777777777764 555433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.73 E-value=0.9 Score=34.14 Aligned_cols=89 Identities=7% Similarity=-0.099 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCC-CCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHhccCC--------
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSN-CRVFS-------IDYNRFIGVLIRHSRFDLVQFYYQQMHPLG-------- 74 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------- 74 (493)
++..-++.+...|.++.|+-+.+.+.... ..++. .++..+..++...|+|..|...|++.++..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45566888999999999999988765432 12221 145667789999999999999999863310
Q ss_pred ----------------CCcChhhHHHHHHHHhccCChhhHH
Q 043480 75 ----------------FSLTPFTYSRFISGLCEVKNFTLIN 99 (493)
Q Consensus 75 ----------------~~~~~~~~~~ll~~~~~~~~~~~a~ 99 (493)
...+...--.+..||.+.++++.|+
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai 142 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI 142 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence 0111234445778889999994443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=90.13 E-value=3.9 Score=29.32 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043480 388 TAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLI 447 (493)
Q Consensus 388 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 447 (493)
+..+-++.+....+.|++.+..+.+++|.+.+|+..|.++|+-...+ ..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34444555555556666666666666666666666666666666443 223344454444
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=89.67 E-value=4.3 Score=29.10 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=52.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 420 RVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAI 485 (493)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 485 (493)
|.=+..+-++.+...++-|++.+....+++|.+.+|+..|.++++-.+.+- .+...+|.-+++-+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqEl 132 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 132 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHHH
Confidence 334567777788888899999999999999999999999999999998862 33355677776654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.62 E-value=3.9 Score=29.37 Aligned_cols=68 Identities=7% Similarity=-0.014 Sum_probs=37.3
Q ss_pred CcchhhHHHHHHHHHHcCCh---hHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 043480 6 GAQRLIYRAQISNLVKAGLI---DQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL 73 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (493)
.+++.+-..++-++++..+. .+++.+++.+.+.++......+..+.-++.+.|++++|++..+.+++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34445555555556665543 345666666665442122333444555666667777777666666654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=87.55 E-value=2.2 Score=35.09 Aligned_cols=54 Identities=11% Similarity=0.146 Sum_probs=33.7
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 379 CLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
...+.|++++++.....-++.. +-|...=..|+..+|-.|+++.|.+-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3455666777766666666552 34555555666666777777777666666655
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.49 E-value=18 Score=37.71 Aligned_cols=148 Identities=11% Similarity=0.080 Sum_probs=97.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C--------------
Q 043480 304 NTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM----N-------------- 365 (493)
Q Consensus 304 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-------------- 365 (493)
..++..+...+..+.+.++..-. +.++...-.+..++...|++++|...|.+.... .
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34555666677777666544332 224444455667788889999998888764310 0
Q ss_pred ----CCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 043480 366 ----LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPD----VISYNALINGLCKSSRVSEAMHLYEEMQIRGAH 437 (493)
Q Consensus 366 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 437 (493)
...-..-|..++..+.+.+.++.+.++-...++...+-+ ...|..+.+++...|++++|-..+-.+.+...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 011123567788888888888888888877775421112 12578888999999999999998888876533
Q ss_pred CCHHHHHHHHHHHHhcCCHHH
Q 043480 438 PDEVTFKLLIGGLVQEKKLEL 458 (493)
Q Consensus 438 p~~~~~~~l~~~~~~~g~~~~ 458 (493)
-...+..|+..++..|..+.
T Consensus 970 -r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHH
T ss_pred -HHHHHHHHHHHHHhCCChhh
Confidence 35667777777776665443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.77 E-value=7.4 Score=28.37 Aligned_cols=67 Identities=13% Similarity=-0.013 Sum_probs=36.6
Q ss_pred CCCHHhHHHHHHHHHccCC---HhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 367 SPDRILYTTIIDCLCKSRE---IGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
.|+..+--.+..++.+..+ ..++..+++.+...+..-.....-.|.-++.+.|++++|.++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3555555555555555543 334566666665532111233344455566677777777777777666
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=85.88 E-value=31 Score=34.62 Aligned_cols=269 Identities=10% Similarity=0.010 Sum_probs=144.5
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHhccCchhHHHHHHHHHHhCCC-------CCChhhHHHH--HH
Q 043480 135 LCKAKEFDKAVQAWEHMIENGIKPDN--KACAALVVGLCGDGKVDLAYELTVGAMKGKV-------EFGVLIYNAL--IS 203 (493)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l--~~ 203 (493)
....|+.++++.+++.....+...+. ..=..+.-+....|..+++...+...+...- .+....-..+ ..
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44566677777766665532101122 2223333444555555567777776664221 0111111222 22
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHH--HHHHccC
Q 043480 204 GFCRTGRIRRAMAIKSFMKWNGCEPDLVTYN--AILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLL--KGLCNSN 279 (493)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~ 279 (493)
+|.-.++ +++.+.+..+.... .+...... .+...+.-.|+.+....++..+.+.. +..+...+. -++...|
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 2333344 45566666655432 11111122 23334556788888888888777632 333333333 3444678
Q ss_pred CHHHHHHHHHHHHHcCCCCChhh-HH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHH
Q 043480 280 QLDKAYMFMVKKMEAKGLRDKVS-YN---TVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAE 355 (493)
Q Consensus 280 ~~~~a~~~~~~~~~~~~~~~~~~-~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 355 (493)
+.+.+..+.+.+... .++.. |. ++.-+|+..|+.....++++.+... ...+......+.-++...|+.+.+.
T Consensus 539 ~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 539 RQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp CGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred ChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 888887777776653 23332 32 3345667788988887799888865 2223333333444455577777778
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHccCCH-hHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 043480 356 KLLNQMRGMNLSPDRILYTTIIDCLCKSREI-GTAYGVFLDMVEQGITPDVISYNALINGLC 416 (493)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 416 (493)
++++.+.+.+ .|....-..+.-+....|.. .++.+++..+.. .++..+-...+.++.
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 8887776654 56665555555555555554 578888888875 345544433443443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=85.23 E-value=17 Score=30.98 Aligned_cols=93 Identities=6% Similarity=-0.090 Sum_probs=46.7
Q ss_pred HHHHhcCChhHHHHH----HHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhh
Q 043480 52 GVLIRHSRFDLVQFY----YQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVT 127 (493)
Q Consensus 52 ~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 127 (493)
..+.+.|++..|-++ .+-..+.+.+++......++..+.....-+..+ ....+.|+..-.+.-.. ..-++..
T Consensus 61 ~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r---~~fi~~ai~WS~~~g~~-~~Gdp~L 136 (312)
T 2wpv_A 61 LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNL---KDVITGMNNWSIKFSEY-KFGDPYL 136 (312)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTH---HHHHHHHHHHHHHTSSC-TTCCHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchH---HHHHHHHHHHHhhcCCC-CCCCHHH
Confidence 345566666555443 333344466777777777777665543222111 00112222221111000 2235666
Q ss_pred HHHHHHHHhccCCHHHHHHHH
Q 043480 128 YTIVIDGLCKAKEFDKAVQAW 148 (493)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~ 148 (493)
...+...|.+.|++.+|..-|
T Consensus 137 H~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 137 HNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHH
Confidence 777777777777777776655
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.99 E-value=7.4 Score=35.19 Aligned_cols=62 Identities=6% Similarity=-0.132 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhcc
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSN--CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHP 72 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 72 (493)
+...++..|.+.|+++.|.+.|.++.... ...-...+-..++.+...+++..+...+.++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45678999999999999999999987642 233355677788889999999999988888754
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.94 E-value=18 Score=31.09 Aligned_cols=173 Identities=13% Similarity=0.077 Sum_probs=87.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHH----HHhccCCCCcChhhHHHHHH
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYY----QQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~ll~ 87 (493)
|..+..-|.+++++++|++++-. -...+.+.|+...|-++- +-..+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~---------------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS---------------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH---------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34444445555555555554332 223445566665544443 33444566777777777777
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALV 167 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 167 (493)
.+.....-+-.+ ....+.|+..-.+. .....-|+.....+...|.+.+++.+|..-| +. |-.++...+..++
T Consensus 103 L~~~~~~~~p~r---~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~--il--g~~~s~~~~a~mL 174 (336)
T 3lpz_A 103 CLRLFQPGEPVR---KRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHL--VL--GTKESPEVLARME 174 (336)
T ss_dssp HHTTSCTTCHHH---HHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH--TT--SCTTHHHHHHHHH
T ss_pred HHHhCCCCCcHH---HHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHH--Hh--cCCchHHHHHHHH
Confidence 776655422111 11113333332221 1113346667777778888888888887766 22 3233345665555
Q ss_pred HHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 168 VGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 168 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
.-+...+...++- .. ....+-.|...++...|..+++...
T Consensus 175 ~ew~~~~~~~e~d--------------lf-iaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 175 YEWYKQDESHTAP--------------LY-CARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHTSCGGGHH--------------HH-HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCccHH--------------HH-HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4443333222111 11 1122334556777777777666554
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.80 E-value=8.4 Score=34.82 Aligned_cols=98 Identities=12% Similarity=-0.066 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHh---CCCCCCHhh--H
Q 043480 336 VTFTILIKAFLREGSSAMAEKLLNQMRGM--NLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVE---QGITPDVIS--Y 408 (493)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~--~ 408 (493)
.+...+...|.+.|+++.|.+.+.++... +...-...+-.+++.+...+++..+...+.++.. .+-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35677888888889999999888888763 2233456777788888888888888888887753 222222211 1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 409 NALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 409 ~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
..-...+...+++..|.+.|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1112223456788888887777654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.62 E-value=2.1 Score=35.25 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=49.2
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 043480 16 ISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL 73 (493)
Q Consensus 16 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (493)
+....+.|++++|+.....-++.. |.|...-..++..++-.|+++.|.+-++...+.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345678899999999999988886 788888888999999999999999888887765
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=82.23 E-value=35 Score=32.46 Aligned_cols=116 Identities=9% Similarity=-0.002 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhH----HHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 043480 139 KEFDKAVQAWEHMIENGIKPDNKAC----AALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRA 214 (493)
Q Consensus 139 ~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 214 (493)
.+.+.|...+....... ..+.... ..+.......+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 47888988888876543 2233222 223333344453556666666655432 3333344455556678999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 043480 215 MAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMES 258 (493)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 258 (493)
...|+.|.... .....-.--+.+++...|+.++|..+|+.+.+
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99998886532 11233233445667778999999999988864
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.26 E-value=19 Score=28.11 Aligned_cols=56 Identities=21% Similarity=0.200 Sum_probs=40.3
Q ss_pred cCCHhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 043480 383 SREIGTAYGVFLDMVEQGITPD-VISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP 438 (493)
Q Consensus 383 ~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 438 (493)
.++..++.++|..|..+|+--. ...|......+...|++.+|..+|+..++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4446688888888877655433 4556777777778888888888888888776666
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 493 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.68 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.68 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.41 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.37 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.35 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.32 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.31 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.26 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.24 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.21 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.16 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.13 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.86 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.84 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.8 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.79 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.79 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.71 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.69 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.68 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.64 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.6 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.6 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.58 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.56 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.52 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.42 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.4 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.38 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.28 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.24 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.23 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.23 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.2 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.18 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.12 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.09 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.02 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.98 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.96 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.94 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.94 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.86 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.86 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.75 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.61 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.6 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.45 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.43 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.01 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.89 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.73 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.27 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.23 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.09 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.95 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.31 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.7 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.84 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.32 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=9.1e-24 Score=190.92 Aligned_cols=383 Identities=14% Similarity=0.049 Sum_probs=233.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCC
Q 043480 15 QISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKN 94 (493)
Q Consensus 15 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 94 (493)
++..+.+.|++++|++.|+++.+.. |.++..+..++.++.+.|++++|+..|+++++.. +.++.++..+..++...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 5667778888888888888888775 5667778888888888888888888888877654 3445666667777777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccC
Q 043480 95 FTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDG 174 (493)
Q Consensus 95 ~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (493)
+ ++|+..+...... .+.+...+..........+....+........... ................
T Consensus 83 ~-----------~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-- 147 (388)
T d1w3ba_ 83 L-----------QEAIEHYRHALRL-KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKA-- 147 (388)
T ss_dssp H-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHT--
T ss_pred c-----------ccccccccccccc-ccccccccccccccccccccccccccccccccccc-cccccccccccccccc--
Confidence 7 4445555555543 22233333334444444444444444444333322 1122222333333333
Q ss_pred chhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 043480 175 KVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVM 254 (493)
Q Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 254 (493)
.+....+...+....... +.+...+..+...+...|++++|...++
T Consensus 148 ---------------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 193 (388)
T d1w3ba_ 148 ---------------------------------LGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp ---------------------------------TSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ---------------------------------cchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHH
Confidence 444444444444433322 2233444444455555555555555555
Q ss_pred HHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC
Q 043480 255 EMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELD 334 (493)
Q Consensus 255 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 334 (493)
...+.. +.+...+..+...+...|++++|...+.+.....+. +...+..+...+.+.|++++|...|++..+..+ .+
T Consensus 194 ~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~ 270 (388)
T d1w3ba_ 194 KAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HF 270 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SC
T ss_pred HHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CC
Confidence 544432 223444555555566666666666666555554332 445555566666666777777777776665532 24
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 043480 335 VVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALING 414 (493)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 414 (493)
..++..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++.++.. +-+..++..+..+
T Consensus 271 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 348 (388)
T d1w3ba_ 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASV 348 (388)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5666677777777777777777777766644 5666777777777778888888888888777652 3345667777888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 043480 415 LCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQEKK 455 (493)
Q Consensus 415 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 455 (493)
|...|++++|+..|++..+. .| +..+|..+..+|.+.||
T Consensus 349 ~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 349 LQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 88888888888888887764 44 57778888888877775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.2e-23 Score=187.25 Aligned_cols=354 Identities=13% Similarity=0.030 Sum_probs=254.4
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 043480 125 VVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISG 204 (493)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (493)
...+..+...|.+.|++++|+..|++.++.. +.+..++..+..++...|++++|...+....... +.+..........
T Consensus 33 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 110 (388)
T d1w3ba_ 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAA 110 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccccccccccc-ccccccccccccc
Confidence 3344444444444444444444444444331 1123344444444444444444444444444332 1222222233333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHH
Q 043480 205 FCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKA 284 (493)
Q Consensus 205 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 284 (493)
....+....+........... .................+....+...+....... +.+...+..+...+...|+++.|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 188 (388)
T d1w3ba_ 111 LVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp HHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred ccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHH
Confidence 333333334444333333332 3344444455556667788888888887776543 44567788888999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 043480 285 YMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGM 364 (493)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 364 (493)
...+.+.....+. +...+..+...+...|++++|...++.....+. .+...+..+...+...|++++|...|+...+.
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 266 (388)
T d1w3ba_ 189 IHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999887654 677889999999999999999999999988743 46777888999999999999999999999887
Q ss_pred CCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHH
Q 043480 365 NLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTF 443 (493)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~ 443 (493)
. +.+..++..+...+...|++++|...++..... .+.+...+..+...+...|++++|+..+++..+. .| +..++
T Consensus 267 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 342 (388)
T d1w3ba_ 267 Q-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAH 342 (388)
T ss_dssp C-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 5 567889999999999999999999999998876 3567788999999999999999999999999875 44 68889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhchh
Q 043480 444 KLLIGGLVQEKKLELACRLWDQMMEKGFTLD-KTVSAALIEAIHLQDA 490 (493)
Q Consensus 444 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~ 490 (493)
..+..+|.+.|++++|...++++++. .|+ ...+..+..+|.+.|+
T Consensus 343 ~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 343 SNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999864 554 6788889888887664
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.9e-14 Score=125.55 Aligned_cols=229 Identities=12% Similarity=0.013 Sum_probs=141.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
....+..+.+.|++++|+..|+++++.+ |.++.+|..++.++...|++++|...|.+.++.. +.+...+..+..++..
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccc
Confidence 3467888999999999999999999987 7788899999999999999999999999998865 4567888889999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhh----------------HHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVT----------------YTIVIDGLCKAKEFDKAVQAWEHMIENG 155 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (493)
.|++ +.|.+.++..... .|+... ....+..+...+.+.+|.+.|.+..+..
T Consensus 100 ~~~~-----------~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~ 166 (323)
T d1fcha_ 100 ESLQ-----------RQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 166 (323)
T ss_dssp TTCH-----------HHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccc-----------cccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 9999 4555666666553 222111 0011112223344455555555544321
Q ss_pred -CCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043480 156 -IKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYN 234 (493)
Q Consensus 156 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (493)
-.++...+..+...+...|++++|...++...... +.+..+|..+...|...|++++|.+.|++..+.. +-+...+.
T Consensus 167 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~ 244 (323)
T d1fcha_ 167 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRY 244 (323)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHH
Confidence 11233444445555555555555555555554432 2234445555555555555555555555554432 23344455
Q ss_pred HHHHHHHccCChHHHHHHHHHHH
Q 043480 235 AILNYYCDEVMLDEAEKLVMEME 257 (493)
Q Consensus 235 ~ll~~~~~~~~~~~a~~~~~~~~ 257 (493)
.+..+|...|++++|+..|++..
T Consensus 245 ~lg~~~~~~g~~~~A~~~~~~al 267 (323)
T d1fcha_ 245 NLGISCINLGAHREAVEHFLEAL 267 (323)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555555544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=8.5e-14 Score=121.31 Aligned_cols=272 Identities=11% Similarity=-0.016 Sum_probs=170.0
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 043480 164 AALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDE 243 (493)
Q Consensus 164 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 243 (493)
......+...|++++|...|+.+++.. +.+..+|..+..++...|++++|...+++..+.. +-+...+..+...+...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 344555666677777777777766654 3355666666667777777777777776666543 34455666666666667
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 043480 244 VMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLF 323 (493)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 323 (493)
|++++|.+.++.+.... |+.............. .+.......+..+...+.+.++.+.+
T Consensus 101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhc--cchHHHHHhhhhhhhh-------------------cccccchhhHHHHHHhhHHHHHHHHH
Confidence 77777777666665532 2211110000000000 00000111122233445567777777
Q ss_pred HHHHHcCC-CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCC
Q 043480 324 EGMRRRGI-ELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGIT 402 (493)
Q Consensus 324 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 402 (493)
.+..+... .++...+..+...+...|++++|...++...... +.+...|..+...|...|++++|...++++++.. +
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 237 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-P 237 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-h
Confidence 77765432 2355667778888888899999999998887754 5567788888888999999999999999888752 3
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC----------CCCHHHHHHHHHHHHhcCCHHHHH
Q 043480 403 PDVISYNALINGLCKSSRVSEAMHLYEEMQIRGA----------HPDEVTFKLLIGGLVQEKKLELAC 460 (493)
Q Consensus 403 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~p~~~~~~~l~~~~~~~g~~~~a~ 460 (493)
-+..+|..+..+|...|++++|+..|++.++... ......|..+-.++...|+.+.+.
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3567788888899999999999999988765211 112345566666666666665543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=4.1e-11 Score=105.62 Aligned_cols=283 Identities=11% Similarity=-0.057 Sum_probs=183.9
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC-c----
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVF----SIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFS-L---- 77 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~---- 77 (493)
..+......+..+...|++++|++++++..+..+..+ ...++.+..++...|++++|+..|++..+.... +
T Consensus 10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 89 (366)
T d1hz4a_ 10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 89 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence 3445566668889999999999999999988652222 235677888999999999999999998764211 1
Q ss_pred ChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC-
Q 043480 78 TPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGI- 156 (493)
Q Consensus 78 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 156 (493)
....+..+...+...+++..+...+. .++.................+..+...+...|+++.+...+........
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~a~~~~~----~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (366)
T d1hz4a_ 90 ALWSLIQQSEILFAQGFLQTAWETQE----KAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 165 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhh
Confidence 12345666677888899977775553 2333333222111111223566677888999999999999988875421
Q ss_pred ---CCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCC--CC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043480 157 ---KPDNKACAALVVGLCGDGKVDLAYELTVGAMKGK--VE----FGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCE 227 (493)
Q Consensus 157 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (493)
.....++......+...++...+...+....... .. .....+..+...+...|++++|...+.........
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 245 (366)
T d1hz4a_ 166 YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 245 (366)
T ss_dssp SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT
T ss_pred hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccc
Confidence 1223445556666777788888877776655411 01 11234455666777788888888888776554221
Q ss_pred C---CHHHHHHHHHHHHccCChHHHHHHHHHHHH----CCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043480 228 P---DLVTYNAILNYYCDEVMLDEAEKLVMEMES----CGIEPD-VYSYNQLLKGLCNSNQLDKAYMFMVKKME 293 (493)
Q Consensus 228 ~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 293 (493)
. ....+..+...+...|++++|...++.... .+..|+ ...+..+...|...|++++|...+.+.+.
T Consensus 246 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 246 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 233455567777788888888888877652 222222 34556666777778888888777776654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=5.9e-11 Score=101.81 Aligned_cols=200 Identities=9% Similarity=0.008 Sum_probs=139.4
Q ss_pred CcchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHhccCCCCcChhhHHH
Q 043480 6 GAQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHS-RFDLVQFYYQQMHPLGFSLTPFTYSR 84 (493)
Q Consensus 6 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (493)
|....+++.+...+.+.+.+++|+++++.+++.+ |.+...|+....++...| ++++|+..++..++.. +-+..+|..
T Consensus 40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~ 117 (315)
T d2h6fa1 40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHH 117 (315)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHH
Confidence 3345677788888888899999999999999987 777888888888888766 4899999999888765 556778888
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 043480 85 FISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACA 164 (493)
Q Consensus 85 ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 164 (493)
+...+...|++ ++|++.++++++. .+.+...|..+...+...|++++|++.++++++.+. .+..+|+
T Consensus 118 ~~~~~~~l~~~-----------~eAl~~~~kal~~-dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~ 184 (315)
T d2h6fa1 118 RRVLVEWLRDP-----------SQELEFIADILNQ-DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWN 184 (315)
T ss_dssp HHHHHHHHTCC-----------TTHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHH
T ss_pred HhHHHHhhccH-----------HHHHHHHhhhhhh-hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHH
Confidence 88888888888 4556677777665 345678888888888888888888888888887642 2566676
Q ss_pred HHHHHHhccCc------hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 165 ALVVGLCGDGK------VDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 165 ~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
.+...+...+. +++|.+.+...++.. +.+...|+.+...+... ..+++...++...
T Consensus 185 ~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~ 246 (315)
T d2h6fa1 185 QRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQLL 246 (315)
T ss_dssp HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHH
T ss_pred HHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHHH
Confidence 66655544443 345555555555543 33444555444433322 2344444444443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=5.6e-10 Score=95.59 Aligned_cols=130 Identities=6% Similarity=-0.015 Sum_probs=62.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 043480 197 IYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEV-MLDEAEKLVMEMESCGIEPDVYSYNQLLKGL 275 (493)
Q Consensus 197 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (493)
+++.+...+.+.+.+++|+.+++++.+.. |-+...|+.....+...| ++++|...++...+.. +-+..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 33444444455555555555555555443 334444444444444433 3455555555544432 23344444444455
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 043480 276 CNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRR 329 (493)
Q Consensus 276 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (493)
.+.|++++|+..+.+++...+. +...|..+...+...|++++|++.++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 175 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555544332 4444444555555555555555555555444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.32 E-value=8.5e-10 Score=94.44 Aligned_cols=188 Identities=10% Similarity=0.033 Sum_probs=127.2
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 043480 280 QLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLN 359 (493)
Q Consensus 280 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 359 (493)
..+++..+|.+......+.+...|...+......|+++.|..+|+.+...........|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34666777777766544445666777777777778888888888877765333334456777777777788888888888
Q ss_pred HHHhCCCCCCHHhHHHHHHH-HHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CC
Q 043480 360 QMRGMNLSPDRILYTTIIDC-LCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRG-AH 437 (493)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~ 437 (493)
.+.+.. +.+...|...... +...|+.+.|..+|+.+++. .+.+...|..++..+...|+++.|+.+|++..... ..
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 777654 3344444443333 33457778888888887765 34456777777887788888888888888876643 23
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 438 P--DEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 438 p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
| ....|...+.--...|+.+.+..+.+++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 2456777777777778888888888877664
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.31 E-value=6.9e-10 Score=95.01 Aligned_cols=188 Identities=10% Similarity=0.073 Sum_probs=143.9
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 043480 245 MLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFE 324 (493)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 324 (493)
..+++..++++..+...+.+...+...+....+.|+++.|..+|.+++...+......|...+....+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45778888888876554556667777888888899999999999988876555445578888888888899999999999
Q ss_pred HHHHcCCCcCHhHHHHHHHH-HHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCC-CC
Q 043480 325 GMRRRGIELDVVTFTILIKA-FLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQG-IT 402 (493)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~ 402 (493)
.+.+.+.. +...|...... +...|+.+.|..+|+.+.+.. +.+...|...+..+...|+++.|..+|++.++.. ..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 98876433 33444333332 344688999999999988754 5678889999999999999999999999988753 23
Q ss_pred CC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 043480 403 PD--VISYNALINGLCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 403 p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (493)
|+ ...|...+..-...|+.+.+..+.+++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32 346888888777889999999999988653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=5.3e-09 Score=91.68 Aligned_cols=56 Identities=18% Similarity=0.089 Sum_probs=27.6
Q ss_pred HHHHhccCchhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043480 167 VVGLCGDGKVDLAYELTVGAMKGKVEFG----VLIYNALISGFCRTGRIRRAMAIKSFMK 222 (493)
Q Consensus 167 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (493)
...+...|++++|.+++++.++.....+ ..++..+...+...|++++|...+++..
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 78 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 78 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555666666666655554321111 1234444555555555555555555544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=7.3e-11 Score=98.71 Aligned_cols=84 Identities=12% Similarity=-0.042 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGL 89 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 89 (493)
.+|..+...|.+.|++++|+..|+++++.+ |.++.+|+.++.++.+.|++++|+..|+++++.. +.++.++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence 344455555555555555555555555544 4445555555555555555555555555555543 22334455555555
Q ss_pred hccCCh
Q 043480 90 CEVKNF 95 (493)
Q Consensus 90 ~~~~~~ 95 (493)
...|++
T Consensus 116 ~~~g~~ 121 (259)
T d1xnfa_ 116 YYGGRD 121 (259)
T ss_dssp HHTTCH
T ss_pred HHHhhH
Confidence 555555
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.21 E-value=5.5e-11 Score=103.55 Aligned_cols=145 Identities=10% Similarity=-0.021 Sum_probs=72.5
Q ss_pred ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----------cCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccC
Q 043480 24 LIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIR----------HSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVK 93 (493)
Q Consensus 24 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 93 (493)
..++|+++++++++.+ |.+...|+.....+.. .|++++|+.+++..++.. +.+...|..+..++...+
T Consensus 44 ~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 3467777777777665 4444455443333222 223456666666665543 334445555554544444
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHH-HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc
Q 043480 94 NFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTI-VIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCG 172 (493)
Q Consensus 94 ~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (493)
+.+. +.|+..+.+.... .+++...+.. ....+...+.++.|+..++.+.+... -+..++..+...+..
T Consensus 122 ~~~~---------~~a~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~ 190 (334)
T d1dcea1 122 EPNW---------ARELELCARFLEA-DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQ 190 (334)
T ss_dssp SCCH---------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHH
T ss_pred cccH---------HHHHHHHHHHHhh-CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3111 3444555555443 2233444332 23445555666666666666655432 245555555555555
Q ss_pred cCchhHHHH
Q 043480 173 DGKVDLAYE 181 (493)
Q Consensus 173 ~~~~~~a~~ 181 (493)
.|++++|..
T Consensus 191 ~~~~~~A~~ 199 (334)
T d1dcea1 191 LHPQPDSGP 199 (334)
T ss_dssp HSCCCCSSS
T ss_pred hcCHHHHHH
Confidence 555555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=1.4e-09 Score=90.65 Aligned_cols=195 Identities=10% Similarity=-0.080 Sum_probs=97.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHH
Q 043480 267 SYNQLLKGLCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFL 346 (493)
Q Consensus 267 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (493)
++..+..+|.+.|++++|+..|.+.+...+. ++.+|+.+..++...|++++|++.|++..+..+. +..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 3444455666666666666666666655443 5556666666666666666666666666655322 3445556666666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC----hh
Q 043480 347 REGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR----VS 422 (493)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----~~ 422 (493)
..|++++|...|+...+.. +.+......+...+...+..+.+..+....... .++...++ ++..+..... .+
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--chhhhhhh-HHHHHHHHHHHHHHHH
Confidence 6666666666666665543 233333333333344444444444444433332 11111111 1222211111 11
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 423 EAMHLYEEMQIRGAHP-DEVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 423 ~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.+...+..... ..| ...+|..+...+...|++++|.+.+++++..
T Consensus 193 ~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 193 RLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 11111111111 011 2345566677777777777777777777753
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=2.5e-10 Score=99.23 Aligned_cols=215 Identities=5% Similarity=-0.084 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHCCCCCChhhHH-HHHHHHHccCCHHHHH
Q 043480 209 GRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEV--MLDEAEKLVMEMESCGIEPDVYSYN-QLLKGLCNSNQLDKAY 285 (493)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~ 285 (493)
|.+++|+..++...+.. +.+...|..+...+...+ +++++...+..+.+.. +++...+. .....+...+.++.|+
T Consensus 87 ~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 87 ALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHH
Confidence 34455555555555442 334444444444443333 3555555555555432 22233332 2234444455555565
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 043480 286 MFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMN 365 (493)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 365 (493)
..+..++...+. +...|+.+...+...|++++|...+....+. .|+ .......+...+..+.+...+.......
T Consensus 165 ~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~ 238 (334)
T d1dcea1 165 AFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (334)
T ss_dssp HHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC
Confidence 555555554432 4555555555555555555443333222221 000 0111112222333333444444333322
Q ss_pred CCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 366 LSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
+++...+..+...+...|+..+|...+.+..+.. +.+..++..+..++...|++++|.+.++++.+
T Consensus 239 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 239 -AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp -CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred -cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2233333333344444444444444444444331 11233444444444455555555555555444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.86 E-value=5.9e-08 Score=81.86 Aligned_cols=207 Identities=7% Similarity=-0.101 Sum_probs=133.3
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhC-----CCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCC---C--cC
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQS-----NCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGF---S--LT 78 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~ 78 (493)
...|...+..|-.+|++++|.+.|+++.+. +.+....+|..+..+|.+.|++++|++.+++..+... . ..
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 116 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence 346889999999999999999999988653 1112245788889999999999999999998765311 1 11
Q ss_pred hhhHHHHHHHHh-ccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 043480 79 PFTYSRFISGLC-EVKNFTLINILLDNMDKLALEVFHKMVSKGREP-DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGI 156 (493)
Q Consensus 79 ~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 156 (493)
..++..+...|. ..|+++.|...+. +|.+++... +.++ ...++..+...+...|++++|++.|++......
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~~----~A~~l~~~~---~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~ 189 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCYE----LAGEWYAQD---QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHH----HHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHH----HHHHHHHhc---CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCc
Confidence 345556666664 4689977776663 334433322 2222 234678888999999999999999999876532
Q ss_pred CCCH------HhHHHHHHHHhccCchhHHHHHHHHHHhCCCC-CC---hhhHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 043480 157 KPDN------KACAALVVGLCGDGKVDLAYELTVGAMKGKVE-FG---VLIYNALISGFCRT--GRIRRAMAIKSFMK 222 (493)
Q Consensus 157 ~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~~--~~~~~a~~~~~~~~ 222 (493)
.... ..+...+..+...|+++.|...++...+.... ++ ......++.++... +.+++|+..|+.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred cchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 1111 12334455566778888888888887765311 11 12334455555442 34666666665444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=1.2e-07 Score=73.98 Aligned_cols=132 Identities=8% Similarity=-0.036 Sum_probs=101.8
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGL 89 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 89 (493)
..|+. ...+...|+++.|++.|+++ .++++.+|..+..++...|++++|+..|++.++.+ +.++..|..+..++
T Consensus 7 ~l~~~-g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~ 80 (192)
T d1hh8a_ 7 SLWNE-GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 80 (192)
T ss_dssp HHHHH-HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHH
Confidence 34553 77789999999999999876 35678889999999999999999999999999876 56678999999999
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHHHHHhCCC--------------CCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 90 CEVKNFTLINILLDNMDKLALEVFHKMVSKGR--------------EPD-VVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~--------------~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
...|+++.| ++.|++.+.... +++ ..++..+..++.+.|++++|.+.+......
T Consensus 81 ~~~g~~~~A-----------~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 81 YQTEKYDLA-----------IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHTTCHHHH-----------HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhhccHHHH-----------HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999555 455555443210 011 234556777888899999999999888876
Q ss_pred CCCC
Q 043480 155 GIKP 158 (493)
Q Consensus 155 ~~~~ 158 (493)
...+
T Consensus 150 ~~~~ 153 (192)
T d1hh8a_ 150 KSEP 153 (192)
T ss_dssp CCSG
T ss_pred CCCc
Confidence 4443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=1.8e-07 Score=72.98 Aligned_cols=85 Identities=8% Similarity=-0.053 Sum_probs=46.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhH
Q 043480 309 AFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGT 388 (493)
Q Consensus 309 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 388 (493)
.+...|+++.|++.|.++ .+|+..++..+..++...|++++|++.|++..+.+ +.+...|..+..+|.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence 344455555555555443 13344555555555555555555555555555544 4445555555555555555555
Q ss_pred HHHHHHHHHh
Q 043480 389 AYGVFLDMVE 398 (493)
Q Consensus 389 a~~~~~~~~~ 398 (493)
|...|++.++
T Consensus 89 A~~~~~kAl~ 98 (192)
T d1hh8a_ 89 AIKDLKEALI 98 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=9e-08 Score=67.86 Aligned_cols=106 Identities=12% Similarity=0.077 Sum_probs=89.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
+..-+..+.+.|++++|+..|+++++.+ |.++..|..+..++...|++++|+..+++.++.+ +.++..|..+..++..
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHH
Confidence 3456788999999999999999999987 8889999999999999999999999999999886 6788899999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIV 131 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 131 (493)
.|++ +.|+..|++..+. .+-+...+..+
T Consensus 84 ~~~~-----------~~A~~~~~~a~~~-~p~~~~~~~~l 111 (117)
T d1elwa_ 84 LNRF-----------EEAKRTYEEGLKH-EANNPQLKEGL 111 (117)
T ss_dssp TTCH-----------HHHHHHHHHHHTT-CTTCHHHHHHH
T ss_pred ccCH-----------HHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 9999 6777888888774 23344444433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.79 E-value=7.1e-08 Score=81.36 Aligned_cols=207 Identities=15% Similarity=-0.045 Sum_probs=108.3
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHH
Q 043480 27 QAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMD 106 (493)
Q Consensus 27 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 106 (493)
++.+++++..+.+ ++....+..+.. ...+++++|..+|.++ ...|...++++.|...+.
T Consensus 3 ~~~~~l~~aek~~-~~~~~~~~~~~~--~~~~~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~--- 61 (290)
T d1qqea_ 3 DPVELLKRAEKKG-VPSSGFMKLFSG--SDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL--- 61 (290)
T ss_dssp CHHHHHHHHHHHS-SCCCTHHHHHSC--CSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH---
T ss_pred CHHHHHHHHHHhc-CcchhHHHHhcC--CccccHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHH---
Confidence 4556666655554 333322221110 1223456666665543 456777788866665553
Q ss_pred HHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHC----CC-CCCHHhHHHHHHHHh-ccCchhHH
Q 043480 107 KLALEVFHKMVSKGREP-DVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN----GI-KPDNKACAALVVGLC-GDGKVDLA 179 (493)
Q Consensus 107 ~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~-~~~~~~~a 179 (493)
+|.++.... +.++ -..+|+.+..+|.+.|++++|++.|++..+. |. .....++..+...|. ..|++++|
T Consensus 62 -kA~~~~~~~---~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 137 (290)
T d1qqea_ 62 -KAADYQKKA---GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKA 137 (290)
T ss_dssp -HHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred -HHHHHHHHc---CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHH
Confidence 233333322 1222 2356777888888888888888888776542 10 011234444555553 34777777
Q ss_pred HHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----H-HHHHHHHHHHHccCChHH
Q 043480 180 YELTVGAMKG----KVEF-GVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPD-----L-VTYNAILNYYCDEVMLDE 248 (493)
Q Consensus 180 ~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-~~~~~ll~~~~~~~~~~~ 248 (493)
.+.+.+..+. +.++ ...++..+...+...|++++|+..|+++........ . ..+...+..+...|+++.
T Consensus 138 ~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 217 (290)
T d1qqea_ 138 IDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVA 217 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHH
Confidence 7777665431 1011 123455566666777777777777766655421111 0 112233334455666666
Q ss_pred HHHHHHHHHH
Q 043480 249 AEKLVMEMES 258 (493)
Q Consensus 249 a~~~~~~~~~ 258 (493)
|...++...+
T Consensus 218 A~~~~~~~~~ 227 (290)
T d1qqea_ 218 AARTLQEGQS 227 (290)
T ss_dssp HHHHHHGGGC
T ss_pred HHHHHHHHHH
Confidence 6666666554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.71 E-value=2.8e-05 Score=63.98 Aligned_cols=228 Identities=11% Similarity=-0.052 Sum_probs=121.7
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHhccCCCCcChhhHH
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIR----HSRFDLVQFYYQQMHPLGFSLTPFTYS 83 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (493)
||..+..|...+.+.|++++|++.|+++.+.| +...+..|...|.. ..++..|...++.....+ ++....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 57788889999999999999999999998865 45566667777765 567888888888877654 333333
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCC
Q 043480 84 RFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLC----KAKEFDKAVQAWEHMIENGIKPD 159 (493)
Q Consensus 84 ~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~ 159 (493)
.+...+......+... +.|...++.....|.. .....+...+. .......+...+...... .+
T Consensus 75 ~l~~~~~~~~~~~~~~-------~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~ 141 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNT-------NKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---ND 141 (265)
T ss_dssp HHHHHHHHTSSSCCCH-------HHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TC
T ss_pred ccccccccccccchhh-------HHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cc
Confidence 4433333221111111 5566666666665422 22222222222 234455666666665553 24
Q ss_pred HHhHHHHHHHHhc----cCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHH
Q 043480 160 NKACAALVVGLCG----DGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCR----TGRIRRAMAIKSFMKWNGCEPDLV 231 (493)
Q Consensus 160 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 231 (493)
...+..+...+.. ..+...+...+....+.+ +......+...|.. ..+.++|..+|++..+.| ++.
T Consensus 142 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~ 215 (265)
T d1ouva_ 142 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGG 215 (265)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred cchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHH
Confidence 4555555555543 233444445555444432 33333334333333 334555555555555443 233
Q ss_pred HHHHHHHHHHc----cCChHHHHHHHHHHHHCC
Q 043480 232 TYNAILNYYCD----EVMLDEAEKLVMEMESCG 260 (493)
Q Consensus 232 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 260 (493)
.+..|...|.. ..+.++|.+.|+...+.|
T Consensus 216 a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 216 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 33333333332 224445555555544433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=5e-07 Score=63.86 Aligned_cols=90 Identities=10% Similarity=0.021 Sum_probs=47.1
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 043480 377 IDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKL 456 (493)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 456 (493)
...+...|++++|...|.++++.. +.+...|..+..+|...|++++|+..+++..+.+.. +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCH
Confidence 334445555555555555555432 234445555555555555555555555555543221 455555555555555555
Q ss_pred HHHHHHHHHHHH
Q 043480 457 ELACRLWDQMME 468 (493)
Q Consensus 457 ~~a~~~~~~~~~ 468 (493)
++|...+++..+
T Consensus 88 ~~A~~~~~~a~~ 99 (117)
T d1elwa_ 88 EEAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=2.3e-07 Score=70.12 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
+......|.+.|++++|+..|+++++.+ |.+...|..+..++...|++++|+..|+++++.. +.+..+|..+..++..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 4456677888888888888888888876 6777888888888888888888888888887765 4556777888888888
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhC
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSK 119 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~ 119 (493)
.|++ +.|...+++....
T Consensus 91 ~g~~-----------~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 91 LGKF-----------RAALRDYETVVKV 107 (159)
T ss_dssp TTCH-----------HHHHHHHHHHHHH
T ss_pred cCCH-----------HHHHHHHHHHHHc
Confidence 8888 5555666666654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.64 E-value=7.5e-08 Score=76.31 Aligned_cols=94 Identities=9% Similarity=-0.010 Sum_probs=80.1
Q ss_pred cchhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHH
Q 043480 7 AQRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFI 86 (493)
Q Consensus 7 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 86 (493)
|+...+......|.+.|++++|+..|+++++.+ |.++..|..++.+|.+.|++++|+..|+++++.. +-++.+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 566667788999999999999999999999887 7888899999999999999999999999998864 44577888899
Q ss_pred HHHhccCChhhHHHHH
Q 043480 87 SGLCEVKNFTLINILL 102 (493)
Q Consensus 87 ~~~~~~~~~~~a~~~~ 102 (493)
.++...|+++.|...+
T Consensus 80 ~~~~~l~~~~~A~~~~ 95 (201)
T d2c2la1 80 QCQLEMESYDEAIANL 95 (201)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH
Confidence 9999999995554433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1.2e-06 Score=66.05 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=78.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 043480 340 ILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSS 419 (493)
Q Consensus 340 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 419 (493)
.....|.+.|++++|...|+.+.+.. +.+...|..+..+|...|++++|...|+++++.. +-+..+|..+..++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence 34556778888888888888888765 5677788888888888888888888888888753 335577888888888888
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043480 420 RVSEAMHLYEEMQIRGAHPDEVTFKLLIG 448 (493)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 448 (493)
++++|...+++....... +...+..+..
T Consensus 93 ~~~eA~~~~~~a~~~~p~-~~~~~~~l~~ 120 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPH-DKDAKMKYQE 120 (159)
T ss_dssp CHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 888888888888775322 4555444433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.60 E-value=9e-05 Score=60.85 Aligned_cols=114 Identities=11% Similarity=-0.042 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCh
Q 043480 350 SSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCK----SREIGTAYGVFLDMVEQGITPDVISYNALINGLCK----SSRV 421 (493)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 421 (493)
....+...+..... ..+...+..+...+.. ..+...+...++...+.| +......+...|.. ..++
T Consensus 125 ~~~~a~~~~~~~~~---~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 125 DFKKAVEYFTKACD---LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred hhHHHHHHhhhhhc---ccccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccch
Confidence 34444444444443 2334444445444443 334555566666655543 34444444444443 4566
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC
Q 043480 422 SEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQ----EKKLELACRLWDQMMEKGFT 472 (493)
Q Consensus 422 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 472 (493)
++|+..|++..+.| ++..+..|...|.+ ..+.++|.++++++.+.|..
T Consensus 199 ~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 199 KEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 67777777766653 45555566666654 23566677777777666543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.58 E-value=1.7e-07 Score=65.72 Aligned_cols=91 Identities=9% Similarity=-0.034 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHh
Q 043480 11 IYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLC 90 (493)
Q Consensus 11 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 90 (493)
.+..++..+.+.|++++|+..|+++++.+ |.++..|..+..++.+.|++++|+..|++.++.. +.+..++..+..++.
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 95 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHH
Confidence 34457888999999999999999999987 6789999999999999999999999999999875 566889999999999
Q ss_pred ccCChhhHHHHHH
Q 043480 91 EVKNFTLINILLD 103 (493)
Q Consensus 91 ~~~~~~~a~~~~~ 103 (493)
..|++++|.+.++
T Consensus 96 ~~g~~~~A~~~l~ 108 (112)
T d1hxia_ 96 NEHNANAALASLR 108 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHH
Confidence 9999955554443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.56 E-value=6.4e-07 Score=70.72 Aligned_cols=99 Identities=12% Similarity=-0.028 Sum_probs=85.3
Q ss_pred cCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043480 333 LDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALI 412 (493)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 412 (493)
|+...+......+.+.|++++|+..|....+.. |.+...|..+..+|.+.|++++|...|+++++.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 677778888889999999999999999888766 6788889999999999999999999999998752 33567888899
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 043480 413 NGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~ 433 (493)
.+|...|++++|+..|+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998865
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=3.5e-07 Score=64.86 Aligned_cols=105 Identities=13% Similarity=0.127 Sum_probs=58.3
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 043480 375 TIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR---VSEAMHLYEEMQIRGAHPD-EVTFKLLIGGL 450 (493)
Q Consensus 375 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 450 (493)
.++..+...+++++|.+.|++.++.+ +.+..++..+..++.+.++ +++|+.+++++...+..|+ ..++..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 44555555666666666666666543 3355566666666655433 3346666666655432222 23555666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043480 451 VQEKKLELACRLWDQMMEKGFTLDKTVSAALI 482 (493)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 482 (493)
.+.|++++|.+.|+++++. .|+..-...+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~--~P~~~~A~~l~ 112 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT--EPQNNQAKELE 112 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh--CcCCHHHHHHH
Confidence 6666666666666666653 45544333333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.42 E-value=1.6e-06 Score=60.63 Aligned_cols=91 Identities=10% Similarity=0.004 Sum_probs=64.4
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043480 375 TIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEK 454 (493)
Q Consensus 375 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 454 (493)
.+...+.+.|++++|...|++.++.. +-+...|..+..++.+.|++++|+..+++..+..+. +...+..+...|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCC
Confidence 34555667777777777777777653 235667777777777778888888877777764322 5777777777777788
Q ss_pred CHHHHHHHHHHHH
Q 043480 455 KLELACRLWDQMM 467 (493)
Q Consensus 455 ~~~~a~~~~~~~~ 467 (493)
++++|.+.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 8888877777653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=1.3e-06 Score=61.86 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=68.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC---HhHHHHHHHHHHhCCCCCC-HhhHHHHHHH
Q 043480 339 TILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSRE---IGTAYGVFLDMVEQGITPD-VISYNALING 414 (493)
Q Consensus 339 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~ 414 (493)
..++..+...+++++|++.|+...+.+ +.+..++..+..++.+.++ +++|..+++++++.+..|+ ..++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 346667777788888888888887766 6677777778877776554 4458888888776543333 2366777888
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 043480 415 LCKSSRVSEAMHLYEEMQIR 434 (493)
Q Consensus 415 ~~~~g~~~~a~~~~~~~~~~ 434 (493)
|.+.|++++|++.|+++.+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 88888888888888888774
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=7.3e-07 Score=64.18 Aligned_cols=63 Identities=10% Similarity=0.070 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPL 73 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (493)
..+..+...|.+.|++++|++.|+++++.+ |.+...|..+..+|.+.|++++|+..++++++.
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l 67 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh
Confidence 446678889999999999999999999987 678888999999999999999999999998764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.28 E-value=0.00073 Score=56.53 Aligned_cols=136 Identities=14% Similarity=0.136 Sum_probs=66.5
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCC
Q 043480 42 VFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGR 121 (493)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~ 121 (493)
|+..--..++..|.+.|.++.|..+|..+.. |..++.++.+.+++ +.|.+++.+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~-----------~~avd~~~k~----- 66 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEY-----------QAAVDGARKA----- 66 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCH-----------HHHHHHHHHH-----
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccH-----------HHHHHHHHHc-----
Confidence 3344444556666677777777777765532 55566666666666 3333333322
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHH
Q 043480 122 EPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNAL 201 (493)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (493)
.+..+|-.+...+.+......+ .+...+...+......++..|-..|.+++...++....... ..+...++.+
T Consensus 67 -~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L 139 (336)
T d1b89a_ 67 -NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 139 (336)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHH
T ss_pred -CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHH
Confidence 1455666666666665544332 22222233344555566666666677777776666655432 4455566667
Q ss_pred HHHHHhcC
Q 043480 202 ISGFCRTG 209 (493)
Q Consensus 202 ~~~~~~~~ 209 (493)
+..|++.+
T Consensus 140 ~~lyak~~ 147 (336)
T d1b89a_ 140 AILYSKFK 147 (336)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhC
Confidence 77666653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.24 E-value=4.2e-05 Score=56.61 Aligned_cols=79 Identities=9% Similarity=-0.103 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 043480 406 ISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLD-KTVSAALIEA 484 (493)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~ 484 (493)
.+|..+..+|.+.|++++|+..+++.++.++. +..+|..++.++...|++++|...+++.++. .|+ ..+...+-.+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 46677888888999999999999988875422 7888889999999999999999999998875 454 4444444444
Q ss_pred Hhh
Q 043480 485 IHL 487 (493)
Q Consensus 485 ~~~ 487 (493)
..+
T Consensus 145 ~~k 147 (153)
T d2fbna1 145 VNK 147 (153)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=4.1e-05 Score=57.85 Aligned_cols=82 Identities=7% Similarity=-0.040 Sum_probs=60.4
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043480 372 LYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLV 451 (493)
Q Consensus 372 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 451 (493)
+|+.+..+|.+.|++++|...++..++.. +.++.++..+..+|...|++++|+..|++..+.++. |..+...+..+..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 56667788888888999988888888763 346778888888888889999999999888875322 5666655555544
Q ss_pred hcCC
Q 043480 452 QEKK 455 (493)
Q Consensus 452 ~~g~ 455 (493)
+.+.
T Consensus 142 ~~~~ 145 (170)
T d1p5qa1 142 RIRR 145 (170)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.23 E-value=0.00097 Score=55.75 Aligned_cols=280 Identities=13% Similarity=0.049 Sum_probs=120.4
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 043480 124 DVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALIS 203 (493)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 203 (493)
|..--..+...|.+.|.++.|..+|..+.. +..++..+.+.++++.|.+.+.+.. +..+|..+..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~ 77 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCF 77 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHH
Confidence 333344455555566666666666653321 3444555555666666555554331 3445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH
Q 043480 204 GFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLCNSNQLDK 283 (493)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 283 (493)
.+.+......+. +.......++.....++..|-..|.+++...+++...... ..+...++.++.+|++.+. ++
T Consensus 78 ~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~k 150 (336)
T d1b89a_ 78 ACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QK 150 (336)
T ss_dssp HHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HH
T ss_pred HHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HH
Confidence 555555443321 1112223344444555566666666666666666554321 3344455555555555432 22
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 043480 284 AYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRG 363 (493)
Q Consensus 284 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 363 (493)
..+.+... . +......++..|.+.+-++++.-+ |.+.|.++.|..+. .+
T Consensus 151 l~e~l~~~---s---~~y~~~k~~~~c~~~~l~~elv~L----------------------y~~~~~~~~A~~~~---i~ 199 (336)
T d1b89a_ 151 MREHLELF---W---SRVNIPKVLRAAEQAHLWAELVFL----------------------YDKYEEYDNAIITM---MN 199 (336)
T ss_dssp HHHHHHHH---S---TTSCHHHHHHHHHTTTCHHHHHHH----------------------HHHTTCHHHHHHHH---HH
T ss_pred HHHHHHhc---c---ccCCHHHHHHHHHHcCChHHHHHH----------------------HHhcCCHHHHHHHH---HH
Confidence 22222111 1 111122333444444444444433 34444444333221 11
Q ss_pred CCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCH-----------hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043480 364 MNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDV-----------ISYNALINGLCKSSRVSEAMHLYEEMQ 432 (493)
Q Consensus 364 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~~~ 432 (493)
+ +++..-....+..+.+.++.+...++....++. .|+. ..-..++..+.+.++.......++...
T Consensus 200 ~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~ 275 (336)
T d1b89a_ 200 H--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQ 275 (336)
T ss_dssp S--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred c--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 1 111111222233333333333333333332221 1110 001334444555666666666666655
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043480 433 IRGAHPDEVTFKLLIGGLVQEKKLELACRLW 463 (493)
Q Consensus 433 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 463 (493)
..| +..+.+++...|...+|++.-.+.+
T Consensus 276 ~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 276 NHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp TTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 433 4578899999999999976644443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=1.8e-05 Score=56.66 Aligned_cols=94 Identities=11% Similarity=0.126 Sum_probs=52.2
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC-----HHHHHHHHH
Q 043480 375 TIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAH-PD-----EVTFKLLIG 448 (493)
Q Consensus 375 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~-----~~~~~~l~~ 448 (493)
.+...+...|++++|...|.+.++.+ +.+...+..+..+|...|++++|+..++++++.... +. ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666542 234555666666666666666666666665442110 00 234555556
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 043480 449 GLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~ 469 (493)
.+...+++++|.+.+++.+..
T Consensus 88 ~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 666666666666666666543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=2.1e-05 Score=59.51 Aligned_cols=112 Identities=12% Similarity=0.051 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHH
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGL 89 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 89 (493)
..+......+.+.|++++|+..|+++++.. +...... ..-......+ ...+|+.+..+|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~-~~~~~~~-------------~~~~~~~~~~-------~~~~~~nla~~y 72 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFS-------------NEEAQKAQAL-------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCC-------------SHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hhccccc-------------hHHHhhhchh-------HHHHHHHHHHHH
Confidence 345566778888999999999998887643 1111100 0000000000 112455566667
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 90 CEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
.+.|++ +.|+..++..+.. .|.++.+|..+..+|...|++++|+..|+...+.
T Consensus 73 ~k~~~~-----------~~A~~~~~~al~~-~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 73 LKLQAF-----------SAAIESCNKALEL-DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHTTCH-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hhhhhc-----------ccccchhhhhhhc-cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 777777 4455555555554 2335666766777777777777777777777664
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.18 E-value=4.2e-06 Score=61.50 Aligned_cols=127 Identities=16% Similarity=0.112 Sum_probs=88.1
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc----------CChhHHHHHHHHhccCCCCcChhhHHHHHHH
Q 043480 19 LVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRH----------SRFDLVQFYYQQMHPLGFSLTPFTYSRFISG 88 (493)
Q Consensus 19 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 88 (493)
|-+.+.+++|++.|+.+.+.+ |.++..+..+..++... +.+++|+..|+++++.+ +.+..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 456678999999999999997 88889999999888754 44578999999999875 5667888888888
Q ss_pred HhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 043480 89 LCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG 155 (493)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (493)
|...|+............+.|.+.|++.+. +.|+...+...+..+ .+|.+++.+..+.|
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 877654322222222222667778888777 455555555444333 45566666665544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=6.7e-07 Score=81.39 Aligned_cols=112 Identities=8% Similarity=-0.167 Sum_probs=51.6
Q ss_pred HHhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043480 160 NKACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNALISGFCRTGRIRRAMAIKSFMKWNGCEPDLVTYNAILNY 239 (493)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 239 (493)
...+..+...+.+.|+.+.|...+....... ...++..+...+...+++++|...|++..... |.+...|+.+...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence 3445555555666666666665554444311 12345556666666666777776666666553 4445666666666
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 043480 240 YCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKGLC 276 (493)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 276 (493)
+...|+..+|...|.+..... +|.+.++..|...+.
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 666677666666666666543 345555555555544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.09 E-value=0.0001 Score=55.85 Aligned_cols=125 Identities=15% Similarity=0.078 Sum_probs=84.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043480 341 LIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSR 420 (493)
Q Consensus 341 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (493)
........|++++|...|....... +.... .......-+...-..+... ....+..+..++...|+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence 3446677888998888888887642 11100 0001101111111111111 23467788889999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 043480 421 VSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMME-----KGFTLDKTVSAA 480 (493)
Q Consensus 421 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 480 (493)
+++|+..++++...... +...|..++.+|.+.|+..+|.+.|+++.+ .|+.|...+...
T Consensus 83 ~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred chHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 99999999999885432 899999999999999999999999998854 499998766443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=4.7e-06 Score=75.66 Aligned_cols=113 Identities=11% Similarity=-0.053 Sum_probs=46.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 043480 335 VVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALING 414 (493)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 414 (493)
...+..+...+.+.|+.+.|...+....... ....+..+...+...|++++|...|++..+.. +-+...|+.|...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence 3344445555555555555555554443211 12344555555555666666666666655541 2234556666666
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043480 415 LCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQ 452 (493)
Q Consensus 415 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 452 (493)
+...|+..+|...|.+..... .|.+.++..|...+.+
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 666666666666666655432 2345555555555443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.02 E-value=0.00011 Score=54.35 Aligned_cols=75 Identities=11% Similarity=-0.037 Sum_probs=60.2
Q ss_pred HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 043480 371 ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHP-DEVTFKLLIG 448 (493)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~ 448 (493)
.+|+.+..+|.+.|++++|+..++++++.. +.+..+|..+..++...|++++|+..|++..+. .| |..+...+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~~~~~l~~ 143 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYEL 143 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 467778888999999999999999998863 457788999999999999999999999999885 45 4555544433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=8e-05 Score=56.22 Aligned_cols=60 Identities=15% Similarity=0.092 Sum_probs=27.1
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 373 YTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 373 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
|..+..++.+.|++++|+..++++++.. +.+...|..+..++...|++++|+..|+++.+
T Consensus 80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 80 VLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 3334444444444444444444444432 22334444444444444444444444444444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.96 E-value=4.9e-05 Score=57.44 Aligned_cols=126 Identities=10% Similarity=0.016 Sum_probs=70.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhc
Q 043480 12 YRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCE 91 (493)
Q Consensus 12 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 91 (493)
+......+.+.|++++|++.|+++++.. + ........... .... +.....+..+..++.+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~-~-----------~~~~~~~~~~~-------~~~~-~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV-E-----------GSRAAAEDADG-------AKLQ-PVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-H-----------HHHHHSCHHHH-------GGGH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh-h-----------hhhhhhhhHHH-------HHhC-hhhHHHHHHHHHHHHh
Confidence 4455667778888888888887765421 0 00000000000 0000 2234456666677777
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 043480 92 VKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDNKACAALVVGL 170 (493)
Q Consensus 92 ~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 170 (493)
.|++ +.|+..++..++. .+.++.+|..+..++...|++++|++.|++..+.. +.+......+..+.
T Consensus 90 ~~~~-----------~~Ai~~~~~al~~-~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 90 MSDW-----------QGAVDSCLEALEI-DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 155 (169)
T ss_dssp TTCH-----------HHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hccc-----------chhhhhhhhhhhh-hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 7777 5556666666664 24456677777777777777777777777777653 12444444444443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.94 E-value=5.3e-06 Score=67.63 Aligned_cols=124 Identities=12% Similarity=0.028 Sum_probs=84.2
Q ss_pred HHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcC-hhhHHHHHHHHhccCCh
Q 043480 17 SNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLT-PFTYSRFISGLCEVKNF 95 (493)
Q Consensus 17 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~ 95 (493)
+-..+.|++++|+..+++.++.. |.+...+..++..++..|++++|...++...+.. |+ ...+..+...+...+..
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhcccc
Confidence 34567899999999999999987 8889999999999999999999999999998864 43 33333333333222221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 96 TLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 96 ~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
+.+..........+.+++...+......+...|+.++|.+.++++.+.
T Consensus 81 -----------~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 81 -----------KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp -----------HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111111111111112223344455566788889999999999998875
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.94 E-value=6.2e-05 Score=56.73 Aligned_cols=110 Identities=13% Similarity=0.086 Sum_probs=63.3
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCC---CCCChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHH
Q 043480 9 RLIYRAQISNLVKAGLIDQAVHVFDEMTQSN---CRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRF 85 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (493)
...+...+..+.+.|++.+|+..|++++..- ...+.. -......+ ...+|+.+
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~-----------------~~~~~~~~-------~~~~~~Nl 70 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK-----------------ESKASESF-------LLAAFLNL 70 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH-----------------HHHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh-----------------hhhhcchh-------HHHHHHhH
Confidence 3456677888999999999999998876421 000000 00000000 12244555
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 043480 86 ISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIEN 154 (493)
Q Consensus 86 l~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (493)
..++.+.|++ ..|+..++..+.. .+.+..+|..+..++...|++++|+..|++.++.
T Consensus 71 a~~~~~l~~~-----------~~Ai~~~~~al~l-~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 71 AMCYLKLREY-----------TKAVECCDKALGL-DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHTTCH-----------HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhc-----------ccchhhhhhhhhc-ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5666666666 4444455554443 3445666666666777777777777777776664
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.86 E-value=4.8e-05 Score=55.59 Aligned_cols=106 Identities=16% Similarity=0.145 Sum_probs=74.9
Q ss_pred HHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 043480 54 LIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVID 133 (493)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 133 (493)
|-+.+.+++|+..|+..++.. +.++.++..+..++...+++..+.+..+.. +.|+..|++.++. .|.+..+|..+..
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~-~~Ai~~~~kAl~l-~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMI-QEAITKFEEALLI-DPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHH-HHHHHHHHHHHHh-cchhhHHHhhHHH
Confidence 445667999999999999886 667788888888888777776655544433 6788899988886 3446778888888
Q ss_pred HHhccCC-----------HHHHHHHHHHHHHCCCCCCHHhHH
Q 043480 134 GLCKAKE-----------FDKAVQAWEHMIENGIKPDNKACA 164 (493)
Q Consensus 134 ~~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~ 164 (493)
+|...|+ +++|.+.|++..+. .|+...+.
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~ 123 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL 123 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHH
Confidence 8776543 45566666666653 34444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.86 E-value=0.00055 Score=51.32 Aligned_cols=77 Identities=14% Similarity=0.100 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 043480 337 TFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGL 415 (493)
Q Consensus 337 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 415 (493)
.|..+..+|.+.|++++|+..++...+.. +.+...|..+..++...|++++|...|+++++.. +.+..+...+-.+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34455566666677777777666666654 5566666666666777777777777777766642 22334444443333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.75 E-value=0.00086 Score=50.61 Aligned_cols=125 Identities=13% Similarity=0.052 Sum_probs=85.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 043480 305 TVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSR 384 (493)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 384 (493)
.........|++++|.+.|......-. .... .......-+...-..+. ......+..+...+...|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~r--G~~l--------~~~~~~~w~~~~r~~l~----~~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWR--GPVL--------DDLRDFQFVEPFATALV----EDKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCC--SSTT--------GGGTTSTTHHHHHHHHH----HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCc--cccc--------ccCcchHHHHHHHHHHH----HHHHHHHHHHHHHHHHCC
Confidence 344567789999999999999887511 1100 00000001111111111 122356778888899999
Q ss_pred CHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH-----HcCCCCCHHHHH
Q 043480 385 EIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQ-----IRGAHPDEVTFK 444 (493)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~~ 444 (493)
++++|...++++++.. +-+...|..++.+|...|+.++|++.|+++. +.|+.|...+-.
T Consensus 82 ~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 82 RASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred CchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 9999999999998863 5578889999999999999999999999873 468899876533
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=0.00011 Score=48.99 Aligned_cols=77 Identities=3% Similarity=-0.143 Sum_probs=59.6
Q ss_pred chhhHHHHHHHHHHcCChhHHHHHHHHHhhCCC-----CC-ChhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCcChhh
Q 043480 8 QRLIYRAQISNLVKAGLIDQAVHVFDEMTQSNC-----RV-FSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFT 81 (493)
Q Consensus 8 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (493)
++..+..+...+.+.|++++|+..|+++.+... .+ ...+++.+..++.+.|++++|+..++++++.. +-++.+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHH
Confidence 455667899999999999999999999876421 11 14568889999999999999999999999875 333444
Q ss_pred HHHH
Q 043480 82 YSRF 85 (493)
Q Consensus 82 ~~~l 85 (493)
++.+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.60 E-value=5.5e-05 Score=61.48 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=29.9
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 043480 347 REGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQ 399 (493)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 399 (493)
+.|++++|+..++...+.. |.+...+..+...++..|++++|...++...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455666666665555544 455555556666666666666666666655543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.45 E-value=0.0014 Score=48.19 Aligned_cols=93 Identities=15% Similarity=0.029 Sum_probs=63.9
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCC-CC----------CHhhHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCCCC-
Q 043480 377 IDCLCKSREIGTAYGVFLDMVEQGI-TP----------DVISYNALINGLCKSSRVSEAMHLYEEMQIR-----GAHPD- 439 (493)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~-~p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~p~- 439 (493)
...+...|++++|+..|++.++... .| ...+|+.+..+|...|++++|...+++..+. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3344556777777777777764210 01 1346777888888888888888888887542 11222
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043480 440 ----EVTFKLLIGGLVQEKKLELACRLWDQMMEK 469 (493)
Q Consensus 440 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (493)
...+..+..+|...|++++|...|+++++.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 235677888999999999999999998764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.43 E-value=0.00069 Score=50.02 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=46.0
Q ss_pred hhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 043480 80 FTYSRFISGLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREP---DVVTYTIVIDGLCKAKEFDKAVQAWEHMIE 153 (493)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (493)
.+|+.+..+|...|+++.|...+ +.++.++.+........ ....++.+..+|...|++++|++.|++..+
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~----~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSA----DKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhh----hhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888887666555 34445555443321111 123567788899999999999999988765
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.004 Score=41.01 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043480 407 SYNALINGLCKSSRVSEAMHLYEEMQI 433 (493)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (493)
++..+..++.+.|++++|+..++++++
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 344444444455555555555544444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.89 E-value=0.027 Score=39.61 Aligned_cols=83 Identities=11% Similarity=-0.012 Sum_probs=49.7
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cC
Q 043480 383 SREIGTAYGVFLDMVEQGITPDVISYNALINGLCK----SSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQ----EK 454 (493)
Q Consensus 383 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 454 (493)
..+.++|...+++..+.| ++.....|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..
T Consensus 36 ~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~ 109 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 109 (133)
T ss_dssp TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred ccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence 345666666776666654 33444444444443 345677777777776653 44555556555554 34
Q ss_pred CHHHHHHHHHHHHHcCC
Q 043480 455 KLELACRLWDQMMEKGF 471 (493)
Q Consensus 455 ~~~~a~~~~~~~~~~~~ 471 (493)
+.++|.+++++..+.|.
T Consensus 110 d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 67777777777776654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.73 E-value=0.038 Score=37.18 Aligned_cols=140 Identities=11% Similarity=0.039 Sum_probs=90.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHH
Q 043480 311 CKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAY 390 (493)
Q Consensus 311 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 390 (493)
.-.|..++..+++.+..+. .+..-|+.++--....-+-+.....++.+-+. .| ...++++....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHH
Confidence 3456667777777666654 24444555554444444555445554444331 11 12344444444
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043480 391 GVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKG 470 (493)
Q Consensus 391 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 470 (493)
..+-.+- .+...+...++.+..+|+-+.-.++.+.+.+. -+|++...-.+..+|.+.|...++.+++.++.+.|
T Consensus 77 ~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 4443321 23455667778888999999999998887663 57789999999999999999999999999999988
Q ss_pred CC
Q 043480 471 FT 472 (493)
Q Consensus 471 ~~ 472 (493)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 75
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.27 E-value=0.08 Score=35.58 Aligned_cols=58 Identities=12% Similarity=0.231 Sum_probs=23.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHhHHHHHHHHHHhCC
Q 043480 342 IKAFLREGSSAMAEKLLNQMRGMNLSPDRILYTTIIDCLCKSREIGTAYGVFLDMVEQG 400 (493)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 400 (493)
+.....+|.-+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++-+++.++-+.|
T Consensus 93 Ld~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 93 LDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 333344444444444444433322 3444444444444444444444444444444433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.23 E-value=0.1 Score=36.44 Aligned_cols=14 Identities=21% Similarity=-0.062 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHC
Q 043480 211 IRRAMAIKSFMKWN 224 (493)
Q Consensus 211 ~~~a~~~~~~~~~~ 224 (493)
.++|.++|++..+.
T Consensus 75 ~~~A~~~~~~aa~~ 88 (133)
T d1klxa_ 75 LRKAAQYYSKACGL 88 (133)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHHHHHHHhhhhcc
Confidence 44444444444433
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.39 Score=41.82 Aligned_cols=123 Identities=13% Similarity=0.085 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH--hcCChhHHHHHHHHhccCCCCcChhhHHHHHH
Q 043480 10 LIYRAQISNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLI--RHSRFDLVQFYYQQMHPLGFSLTPFTYSRFIS 87 (493)
Q Consensus 10 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 87 (493)
..| ..+.-..+.|+...+.++...+.. .| ...|...-..-. ......+...++++-... +.........+.
T Consensus 8 ~~y-~~a~~a~~~~~~~~~~~~~~~L~d--yp--L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~--P~~~~lr~~~l~ 80 (450)
T d1qsaa1 8 SRY-AQIKQAWDNRQMDVVEQMMPGLKD--YP--LYPYLEYRQITDDLMNQPAVTVTNFVRANPTL--PPARTLQSRFVN 80 (450)
T ss_dssp HHH-HHHHHHHHTTCHHHHHHHSGGGTT--ST--THHHHHHHHHHHTGGGCCHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHCCCHHHHHHHHhhhcC--CC--CHHHHHHHHHHhccccCCHHHHHHHHHHCCCC--hhHHHHHHHHHH
Confidence 344 456667888999999998888742 22 333443332222 233455555555443211 111222334455
Q ss_pred HHhccCChhhHHHHHHHHHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 043480 88 GLCEVKNFTLINILLDNMDKLALEVFHKMVSKGREPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENG 155 (493)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (493)
.+.+.+++. ..+ .... ..+.+...-.....+....|+.+.|......+-..|
T Consensus 81 ~L~~~~~w~-----------~~~----~~~~-~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 81 ELARREDWR-----------GLL----AFSP-EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHTTCHH-----------HHH----HHCC-SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHhccCHH-----------HHH----Hhcc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 666667662 211 1111 134455555667778888899888888877776554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.95 E-value=0.45 Score=41.38 Aligned_cols=344 Identities=9% Similarity=-0.013 Sum_probs=186.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCcChhhHHHHHHHHhccCChhhHHHHHHHHH-------HHHHHHHHHHHhCCC
Q 043480 49 RFIGVLIRHSRFDLVQFYYQQMHPLGFSLTPFTYSRFISGLCEVKNFTLINILLDNMD-------KLALEVFHKMVSKGR 121 (493)
Q Consensus 49 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~a~~~~~~~~~~g~ 121 (493)
..+..+.+.++++..+..+ .. .+.+...-.....+....|+...+...+...- +.+-.+|..+...|.
T Consensus 77 ~~l~~L~~~~~w~~~~~~~----~~-~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~ 151 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFS----PE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGK 151 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHC----CS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCHHHHHHhc----cC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Confidence 3456777888887655444 22 24455555567777888888876665444332 344445555554432
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHhccCchhHHHHHHHHHHhCCCCCChhhHHH
Q 043480 122 EPDVVTYTIVIDGLCKAKEFDKAVQAWEHMIENGIKPDN-KACAALVVGLCGDGKVDLAYELTVGAMKGKVEFGVLIYNA 200 (493)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (493)
.+...+-.-+......|++..|..+...+. ++. ......+..... ...+....... ..+......
T Consensus 152 -lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~-----~~~~~~~~a~~~l~~~---p~~~~~~~~~~-----~~~~~~~~~ 217 (450)
T d1qsaa1 152 -QDPLAYLERIRLAMKAGNTGLVTVLAGQMP-----ADYQTIASAIISLANN---PNTVLTFARTT-----GATDFTRQM 217 (450)
T ss_dssp -SCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-----GGGHHHHHHHHHHHHC---GGGHHHHHHHS-----CCCHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCChhhHHHHHhhCC-----hhHHHHHHHHHHHHhC---hHhHHHHHhcC-----CCChhhhHH
Confidence 333333334445555566666666554322 222 222222222222 22222221111 222222222
Q ss_pred HHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHccCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 043480 201 LISGFCR--TGRIRRAMAIKSFMKWNGCEPDLVTYNA----ILNYYCDEVMLDEAEKLVMEMESCGIEPDVYSYNQLLKG 274 (493)
Q Consensus 201 l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (493)
+..++.+ ..+.+.+..++....... ..+...+.. +.......+..+.+...+......+ .+.......+..
T Consensus 218 ~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~ 294 (450)
T d1qsaa1 218 AAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRM 294 (450)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHH
T ss_pred HHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHH
Confidence 3333332 357788888888876543 222222222 2223334566777877777766543 344445555666
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHhHHHHHHHHHHHcCCHHHH
Q 043480 275 LCNSNQLDKAYMFMVKKMEAKGLRDKVSYNTVIEAFCKGGQTRRAYKLFEGMRRRGIELDVVTFTILIKAFLREGSSAMA 354 (493)
Q Consensus 275 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 354 (493)
....+++..+...+..+... .........-+..++...|+.+.|...|...... ++ -|..+... +.|..-.
T Consensus 295 al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa~--~Lg~~~~- 365 (450)
T d1qsaa1 295 ALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAAQ--RIGEEYE- 365 (450)
T ss_dssp HHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHHH--HTTCCCC-
T ss_pred HHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHHH--HcCCCCC-
Confidence 67778998888887765432 1123344566778888999999999999988643 23 33333322 2222100
Q ss_pred HHHHHHHHhCCC--CCC-H---HhHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 043480 355 EKLLNQMRGMNL--SPD-R---ILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLY 428 (493)
Q Consensus 355 ~~~~~~~~~~~~--~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 428 (493)
+....+ .+. . ..-..-+..+...|....|...|..+... . +......+.....+.|.++.|+...
T Consensus 366 ------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~-~--~~~~~~~la~lA~~~g~~~~aI~a~ 436 (450)
T d1qsaa1 366 ------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQAT 436 (450)
T ss_dssp ------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC-C--CHHHHHHHHHHHHHCCChhHHHHHH
Confidence 000000 000 0 00112345567889999999999888764 2 4556667788888999999999887
Q ss_pred HHHH
Q 043480 429 EEMQ 432 (493)
Q Consensus 429 ~~~~ 432 (493)
.+..
T Consensus 437 ~~~~ 440 (450)
T d1qsaa1 437 IAGK 440 (450)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7663
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.31 E-value=0.18 Score=34.13 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=45.9
Q ss_pred CCHhhHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043480 403 PDVISYNALINGLCKSS---RVSEAMHLYEEMQIRGAHPD-EVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVS 478 (493)
Q Consensus 403 p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 478 (493)
|+..+--.+..+++++. +.++++.++++..+.+. .+ ...+..|.-+|.+.|++++|.+.++.+++. .|+..-.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p-~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcHHH
Confidence 44444445555565543 34567777777665421 12 345666667777777777777777777754 5555444
Q ss_pred HHHHHH
Q 043480 479 AALIEA 484 (493)
Q Consensus 479 ~~ll~~ 484 (493)
..+...
T Consensus 110 ~~L~~~ 115 (124)
T d2pqrb1 110 GALKSM 115 (124)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.70 E-value=0.19 Score=34.01 Aligned_cols=64 Identities=6% Similarity=-0.028 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHHcC---ChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 043480 9 RLIYRAQISNLVKAG---LIDQAVHVFDEMTQSNCRVF-SIDYNRFIGVLIRHSRFDLVQFYYQQMHPL 73 (493)
Q Consensus 9 ~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (493)
+.+....+-++++.. +.++++.+|+++.+.+ +.+ ...+..+.-+|.+.|++++|...++.+++.
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 334444555555543 4456677777766544 222 234455666677777777777777777664
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.84 E-value=0.91 Score=28.75 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043480 388 TAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLYEEMQ 432 (493)
Q Consensus 388 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 432 (493)
+..+-++.+....+.|++.+..+.+++|.+.+|+..|.++|+-..
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK 68 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 68 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444445555555555555555555555555555543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.32 E-value=1 Score=28.46 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=52.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043480 420 RVSEAMHLYEEMQIRGAHPDEVTFKLLIGGLVQEKKLELACRLWDQMMEKGFTLDKTVSAALIEAI 485 (493)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 485 (493)
|.=++.+-+..+...++.|++.+..+.+++|.+.+|+..|.++++..+.+. .++..+|.-+++-+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilqel 85 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 85 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHHHH
Confidence 455677788888888899999999999999999999999999999998762 23455676666544
|