Citrus Sinensis ID: 043483

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MECGFFNTCRAVIVFIWAALTLLIVHVASATNISIHVAASEIERQALLNSGWWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEcccccEEEEEccccccEEEEccccccccccccEEEccccEEEEcccccHHccccccEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccEEEEEEcccccEEEEEcccccccccccccccccccccEEEEEccccccccccHHHccccccEEEEccccccccc
Coil and Loop (DISEMBL)
mecgffntCRAVIVFIWAALTLLIVHVASATNISIHVAASEIERQALLnsgwwkdriphntsdhcgwvgitcdyegritdiglaeskikgelgrlnfscfpnlqyldlsnnnlsgsilsqigslsnlkyldldrnnlsge
Flexible Loop (DISEMBL)
MECGFFNTCRAVIVFIWAALTLLIVHVASATNISIHVAASEIERQALLNSGWWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQigslsnlkyldldrnnlsge
Low Complexity Region (SEG)
MECGFFNTCRAVIVFIWAALTLLIVHVASATNISIHVAASEIERQALLNSGWWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYldlsnnnlsgsilsqigslsnlKYLDLDRNNLSGE
Disordered region (IsUnstruct)
**CGFFNTCRAVIVFIWAALTLLIVHVASATNISIHVAASEIERQALLNSGWWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLD*********
Disordered Region (DISOPRED)
***GFFNTCRAVIVFIWAALTLLIVHVASATNISIH***SEIERQALLNSGWWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG*
Disordered Region (DISEMBL)
MECGFFNTCRAVIVFIWAALTLLIVHVASATNISIHVAASEIERQALLNSGWWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE
Disordered Region (DISPRO)
*ECGFFNTCRAVIVFIWAALTLLIVHVASATNISIHVAASEIERQALLNSGWWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNN****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MECGFFNTCRAVIVFIWAALTLLIVHVASATNISIHVAASEIERQALLNSGWWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
Q94F62	615	BRASSINOSTEROID INSENSITI	yes	no	0.528	0.120	0.413	3e-11
Q9LP24	1120	Probable leucine-rich rep	no	no	0.578	0.072	0.439	7e-11
Q8LPS5	601	Somatic embryogenesis rec	no	no	0.528	0.123	0.426	4e-10
Q9SKG5	620	Somatic embryogenesis rec	no	no	0.5	0.112	0.405	4e-09
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.621	0.079	0.351	4e-09
C0LGJ1	1106	Probable LRR receptor-lik	no	no	0.714	0.090	0.382	5e-09
Q9FHK7	640	Probable leucine-rich rep	no	no	0.814	0.178	0.345	1e-08
Q9LVM0	654	Probable inactive recepto	no	no	0.835	0.178	0.317	1e-08
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.571	0.076	0.414	2e-08
Q9SSL9	1123	Leucine-rich repeat recep	no	no	0.592	0.073	0.351	2e-08

>sp|Q94F62|BAK1_ARATH BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 65  CGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSL 124
           C W  +TC+ +  +T + L  + + G+L  +     PNLQYL+L +NN++G+I  Q+G+L
Sbjct: 57  CTWFHVTCNSDNSVTRVDLGNANLSGQL-VMQLGQLPNLQYLELYSNNITGTIPEQLGNL 115

Query: 125 SNLKYLDLDRNNLSG 139
           + L  LDL  NNLSG
Sbjct: 116 TELVSLDLYLNNLSG 130

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Controls the expression of genes associated with innate immunity in the absence of pathogens or elicitors. Involved in brassinosteroid (BR) signal transduction. Phosphorylates BRI1. May be involved in changing the equilibrium between plasma membrane-located BRI1 homodimers and endocytosed BRI1-BAK1 heterodimers. Interaction with MSBP1 stimulates the endocytosis of BAK1 and suppresses brassinosteroid signaling. Acts in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) via its interaction with FLS2 and the phosphorylation of BIK1. Involved in programmed cell death (PCD) control. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 60  NTSDHC-GWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSIL 118
           NTS  C  W G++C+  G I ++ L  + I+G      F    NL Y+DLS N LSG+I 
Sbjct: 60  NTSFSCTSWYGVSCNSRGSIEELNLTNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIP 119

Query: 119 SQIGSLSNLKYLDLDRNNLSGE 140
            Q G+LS L Y DL  N+L+GE
Sbjct: 120 PQFGNLSKLIYFDLSTNHLTGE 141

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPS5|SERK5_ARATH Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 65  CGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSL 124
           C W  +TC+ E  +T + L  + + GEL     +  PNLQYL+L NNN++G I  ++G L
Sbjct: 59  CSWFHVTCNTENSVTRLDLGSANLSGELVP-QLAQLPNLQYLELFNNNITGEIPEELGDL 117

Query: 125 SNLKYLDLDRNNLSG 139
             L  LDL  NN+SG
Sbjct: 118 MELVSLDLFANNISG 132

Serine/threonine-kinase of unknown function.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SKG5|SERK4_ARATH Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 9/79 (11%)

Query: 65  CGWVGITCDYEGRITDIGLAESKIKG----ELGRLNFSCFPNLQYLDLSNNNLSGSILSQ 120
           C W  +TC+ E ++T + L  +K+ G    ELG+L      NLQYL+L +NN++G I  +
Sbjct: 64  CTWFHVTCNPENKVTRVDLGNAKLSGKLVPELGQL-----LNLQYLELYSNNITGEIPEE 118

Query: 121 IGSLSNLKYLDLDRNNLSG 139
           +G L  L  LDL  N++SG
Sbjct: 119 LGDLVELVSLDLYANSISG 137

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 24/111 (21%)

Query: 53  WKDRIPHNTSDHCGWVGITCDYEGRITD-IGLAESKIKGELGR------------LNFSC 99
           WK+     T  +  W G+ CD  G + + + L+ S + G+LG             L+ + 
Sbjct: 52  WKENTSETTPCNNNWFGVICDLSGNVVETLNLSASGLSGQLGSEIGELKSLVTLDLSLNS 111

Query: 100 FP-----------NLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           F            +L+YLDLSNN+ SG +    GSL NL +L LDRNNLSG
Sbjct: 112 FSGLLPSTLGNCTSLEYLDLSNNDFSGEVPDIFGSLQNLTFLYLDRNNLSG 162

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGJ1|Y1743_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 51/102 (50%), Gaps = 2/102 (1%)

Query: 40  SEIERQALLNSGWWKDRIPHNTSDHCGWVGITCDYE-GRITDIGLAESKIKGELGRLNFS 98
           S +E +   N G + +    N    C W GI C  +  R+T I L +S I G L + NFS
Sbjct: 50  SYLESRNPQNRGLYTEWKMENQDVVCQWPGIICTPQRSRVTGINLTDSTISGPLFK-NFS 108

Query: 99  CFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
               L YLDLS N + G I   +    NLK+L+L  N L GE
Sbjct: 109 ALTELTYLDLSRNTIEGEIPDDLSRCHNLKHLNLSHNILEGE 150

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FHK7|Y5516_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g05160 OS=Arabidopsis thaliana GN=At5g05160 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 28/142 (19%)

Query: 15  FIWAALTLLIVHVASATNISIHVAASEIERQALLNSGWWKDRIPH--------NTSDHCG 66
           F+ A+   L++  A+A  +S  +A+ E   QALLN   +   +PH        N S    
Sbjct: 8   FVAASFFFLLL-AATAVLVSADLASDE---QALLN---FAASVPHPPKLNWNKNLSLCSS 60

Query: 67  WVGITCDYEG--------RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSIL 118
           W+GITCD           R+  +GL  S     LG+L+      L+ L L +N+L G++ 
Sbjct: 61  WIGITCDESNPTSRVVAVRLPGVGLYGSIPPATLGKLD-----ALKVLSLRSNSLFGTLP 115

Query: 119 SQIGSLSNLKYLDLDRNNLSGE 140
           S I SL +L+YL L  NN SGE
Sbjct: 116 SDILSLPSLEYLYLQHNNFSGE 137

Probable leucine-rich repeat receptor-like protein kinase.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LVM0|Y5830_ARATH Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 34/151 (22%)

Query: 4   GFFNTCRAVIVFIWAALTLLIVHVASATNISIHVAASEIERQALLNSGWWKDRIPH---- 59
           GF +TC    +F+            + T  S  +A    +RQALL    +   +PH    
Sbjct: 21  GFLSTCLVSFLFV------------TTTFCSYAIADLNSDRQALLA---FAASVPHLRRL 65

Query: 60  --NTSDHC--GWVGITCDYEG------RITDIGLAESKIKGELGRLNFSCFPNLQYLDLS 109
             N+++H    WVG+TC  +G      R+  IGL        LG+L      +L+ L L 
Sbjct: 66  NWNSTNHICKSWVGVTCTSDGTSVHALRLPGIGLLGPIPPNTLGKLE-----SLRILSLR 120

Query: 110 NNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
           +N LSG++   I SL +L Y+ L  NN SGE
Sbjct: 121 SNLLSGNLPPDIHSLPSLDYIYLQHNNFSGE 151

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 60  NTSDHC-GWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSIL 118
           NTS  C  W G+ C   G I  + L  + I+G      FS  PNL ++DLS N  SG+I 
Sbjct: 77  NTSSFCTSWYGVACSL-GSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTIS 135

Query: 119 SQIGSLSNLKYLDLDRNNLSGE 140
              G  S L+Y DL  N L GE
Sbjct: 136 PLWGRFSKLEYFDLSINQLVGE 157

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 11/94 (11%)

Query: 55  DRIPHNTSD----------HCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQ 104
           DR+P   +            C W GITCD    +  +    S++ G+LG        +LQ
Sbjct: 44  DRVPPQVTSTWKINASEATPCNWFGITCDDSKNVASLNFTRSRVSGQLGP-EIGELKSLQ 102

Query: 105 YLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            LDLS NN SG+I S +G+ + L  LDL  N  S
Sbjct: 103 ILDLSTNNFSGTIPSTLGNCTKLATLDLSENGFS 136

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
224065665	847	predicted protein [Populus trichocarpa]	0.692	0.114	0.51	7e-18
224110038	964	predicted protein [Populus trichocarpa]	0.692	0.100	0.5	7e-17
296082880	1188	unnamed protein product [Vitis vinifera]	0.957	0.112	0.390	7e-17
225452749	783	PREDICTED: probable LRR receptor-like se	0.871	0.155	0.419	1e-16
224065673	964	predicted protein [Populus trichocarpa]	0.692	0.100	0.49	1e-16
224110020	1048	predicted protein [Populus trichocarpa]	0.692	0.092	0.49	3e-16
359488981	757	PREDICTED: probable LRR receptor-like se	0.871	0.161	0.396	3e-15
357501751	799	Receptor kinase [Medicago truncatula] gi	0.9	0.157	0.358	4e-15
225452751	878	PREDICTED: probable leucine-rich repeat	0.871	0.138	0.404	5e-15
296087789	975	unnamed protein product [Vitis vinifera]	0.75	0.107	0.460	6e-15

>gi|224065665|ref|XP_002301910.1| predicted protein [Populus trichocarpa] gi|222843636|gb|EEE81183.1| predicted protein [Populus trichocarpa]

 Score = 95.1 bits (235), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/100 (51%), Positives = 62/100 (62%), Gaps = 3/100 (3%)

Query: 43  ERQALLNSGWWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAES--KIKGELGRLNFSCF 100
           E +ALL SGWW D   + TS  C W GI CD  G ITDI       K+  + G++NFSCF
Sbjct: 43  EGKALLESGWWSD-YRNLTSHRCKWTGIVCDRAGSITDISPPPEFLKVGNKFGKMNFSCF 101

Query: 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
            NL  L L+N+ LSGSI  QI  L  L+YL+L  NNL+GE
Sbjct: 102 SNLARLHLANHELSGSIPPQISILPQLRYLNLSSNNLAGE 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110038|ref|XP_002333164.1| predicted protein [Populus trichocarpa] gi|222835017|gb|EEE73466.1| predicted protein [Populus trichocarpa]

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 61/100 (61%), Gaps = 3/100 (3%)

Query: 43  ERQALLNSGWWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAES--KIKGELGRLNFSCF 100
           E +ALL SGWW D   + TS  C W GI CD  G IT I       K+  + G++NFSCF
Sbjct: 43  EGKALLESGWWSDY-SNLTSHRCKWTGIVCDGAGSITKISPPPEFLKVGNKFGKMNFSCF 101

Query: 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
            NL  L L+N+ LSGSI  QI  L  L+YL+L  NNL+GE
Sbjct: 102 SNLVRLHLANHELSGSIPPQISILPQLRYLNLSSNNLAGE 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082880|emb|CBI22181.3| unnamed protein product [Vitis vinifera]

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 86/146 (58%), Gaps = 12/146 (8%)

Query: 1   MECGFFNTCRAVIVFIWAAL-----TLLIVHVASATNISIHVAASEIERQALLNSGWWKD 55
           ++C       ++I+F    +     T++I+    A  IS   ++++ E +AL ++GWW  
Sbjct: 32  IDCAELKMASSIIIFTAVVVVTITSTMMIMLFPLANAISSPSSSTD-EAEALRSTGWW-- 88

Query: 56  RIPHNTSDHCGWVGITCDYEGRITDIGLAES-KIKGELGRLNFSCFPNLQYLDLSNNNLS 114
              ++TS HC W G+ C+  GR+T I L  S K  GEL +L+FS FP+L  L LS+  L+
Sbjct: 89  ---NSTSAHCHWDGVFCNNAGRVTGIALYGSGKELGELSKLDFSSFPSLVELSLSDCGLN 145

Query: 115 GSILSQIGSLSNLKYLDLDRNNLSGE 140
           GSI  QIG+L+ L YL L  NNL+GE
Sbjct: 146 GSIPHQIGTLTQLTYLSLGLNNLTGE 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452749|ref|XP_002277477.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 82/131 (62%), Gaps = 9/131 (6%)

Query: 11  AVIVFIWAALTLLIVHVASATNISIHVAASEIERQALLNSGWWKDRIPHNTSDHCGWVGI 70
            V+V I + + +++  +A+A +     ++S  E +AL ++GWW     ++TS HC W G+
Sbjct: 11  VVVVTITSTMMIMLFPLANAIS---SPSSSTDEAEALRSTGWW-----NSTSAHCHWDGV 62

Query: 71  TCDYEGRITDIGLAES-KIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKY 129
            C+  GR+T I L  S K  GEL +L+FS FP+L  L LS+  L+GSI  QIG+L+ L Y
Sbjct: 63  FCNNAGRVTGIALYGSGKELGELSKLDFSSFPSLVELSLSDCGLNGSIPHQIGTLTQLTY 122

Query: 130 LDLDRNNLSGE 140
           L L  NNL+GE
Sbjct: 123 LSLGLNNLTGE 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065673|ref|XP_002301914.1| predicted protein [Populus trichocarpa] gi|222843640|gb|EEE81187.1| predicted protein [Populus trichocarpa]

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 61/100 (61%), Gaps = 3/100 (3%)

Query: 43  ERQALLNSGWWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAES--KIKGELGRLNFSCF 100
           E +AL+ SGWW D   + TS  C W GI CD  G IT I       K+  + G++NFSCF
Sbjct: 43  EGKALVESGWWSD-YSNLTSHRCNWTGIVCDGAGSITKISPPPEFLKVGNKFGKMNFSCF 101

Query: 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
            NL  L L+N+ LSGSI  QI  L  L+YL+L  NNL+GE
Sbjct: 102 SNLVRLHLANHELSGSIPPQISILPQLRYLNLSSNNLAGE 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110020|ref|XP_002333160.1| predicted protein [Populus trichocarpa] gi|222835013|gb|EEE73462.1| predicted protein [Populus trichocarpa]

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 61/100 (61%), Gaps = 3/100 (3%)

Query: 43  ERQALLNSGWWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAES--KIKGELGRLNFSCF 100
           E +ALL SGWW D   + TS  C W GI CD  G IT+I       K+  + G++NFSCF
Sbjct: 43  EGKALLESGWWSDY-SNLTSHRCKWTGIVCDRAGSITEISPPPEFLKVGNKFGKMNFSCF 101

Query: 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
            NL  L L+N+ LSGSI  QI  L  L+YL+L  N L+GE
Sbjct: 102 SNLVRLHLANHELSGSIPHQISILPQLRYLNLSSNYLAGE 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488981|ref|XP_002275364.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 78/131 (59%), Gaps = 9/131 (6%)

Query: 11  AVIVFIWAALTLLIVHVASATNISIHVAASEIERQALLNSGWWKDRIPHNTSDHCGWVGI 70
             +V + + + +++  +A A +     ++S  E +AL ++GWW     ++TS HC W G+
Sbjct: 9   TAVVIVTSTMMMMLFSLAKAIS---SPSSSTDEAEALRSTGWW-----NSTSAHCHWDGV 60

Query: 71  TCDYEGRITDIGLAES-KIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKY 129
            C+  GR+T I L  S K  GEL +L FS FP+L  L+LS   L+GSI  QIG+L+ L  
Sbjct: 61  YCNNAGRVTGIALYGSGKELGELSKLEFSSFPSLVELNLSACGLNGSIPHQIGTLTQLTV 120

Query: 130 LDLDRNNLSGE 140
           L L  NNL+GE
Sbjct: 121 LSLHDNNLTGE 131

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501751|ref|XP_003621164.1| Receptor kinase [Medicago truncatula] gi|355496179|gb|AES77382.1| Receptor kinase [Medicago truncatula]

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 80/131 (61%), Gaps = 5/131 (3%)

Query: 11  AVIVFIWAALTLLIVHVASATNISIHVAASEIERQALLNSGWWKDRIPHNTSDHCGWVGI 70
           A+++  W    + I+ VA++ +  + +   E E QAL+NSGWW D   H  +  C W GI
Sbjct: 2   ALVIGAWTYFFIAIMSVAASKSSPLQL---EKEAQALVNSGWWNDFTNHAPT-RCQWPGI 57

Query: 71  TCDYEGRITDIGL-AESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKY 129
           TC+ EG IT+I L  E ++  + G+ +FS F NL +L+L+++ + G+I  ++ +LS L +
Sbjct: 58  TCNNEGSITNISLPPEIQLGDKFGKFHFSSFTNLVHLNLASHGIIGNIPFELATLSKLIF 117

Query: 130 LDLDRNNLSGE 140
           LD+  N++ G 
Sbjct: 118 LDVSSNDIEGH 128

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452751|ref|XP_002277606.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera]

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 80/131 (61%), Gaps = 9/131 (6%)

Query: 11  AVIVFIWAALTLLIVHVASATNISIHVAASEIERQALLNSGWWKDRIPHNTSDHCGWVGI 70
            V+V I + + +++  +A+A +     ++S  E +AL ++GWW     ++TS HC W G+
Sbjct: 11  VVVVTITSIMMIMLFSLANALS---SPSSSTDEAEALRSTGWW-----NSTSAHCNWDGV 62

Query: 71  TCDYEGRITDIGLAESKIK-GELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKY 129
            C+  GR+T I   +S  K GEL +L FS FP+L  L LS+  L+GSI  QIG+L+ L  
Sbjct: 63  YCNNAGRVTQIAFFDSGKKLGELSKLEFSSFPSLVELFLSDCGLNGSIPHQIGTLTQLII 122

Query: 130 LDLDRNNLSGE 140
           L L  NNL+GE
Sbjct: 123 LYLPLNNLTGE 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087789|emb|CBI35045.3| unnamed protein product [Vitis vinifera]

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 71/115 (61%), Gaps = 10/115 (8%)

Query: 26  HVASATNISIHVAASEIERQALLNSGWWK-DRIPHNTSDHCGWVGITCDYEGRITDIGLA 84
           HV  ++N       S++E++ALL SGWW  +    + SDHC W GITC+ EG +  +   
Sbjct: 32  HVHPSSN------QSQVEKEALLESGWWSGETDHDHDSDHCDWSGITCNEEGHVIAVYYR 85

Query: 85  ESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
            S   GEL +L FS FP+L+ +DL +  LSG I  QIGSL+ + YLDL RN LSG
Sbjct: 86  AS---GELSKLKFSSFPSLRTIDLHDGRLSGRIPHQIGSLTKVIYLDLSRNELSG 137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2020457	1166	BRL1 "BRI1 like" [Arabidopsis	0.285	0.034	0.4	3.6e-06
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.864	0.101	0.253	1.5e-05
TAIR|locus:2040471	601	SERK5 "somatic embryogenesis r	0.85	0.198	0.269	2.6e-05
TAIR|locus:2156992	946	AT5G49770 [Arabidopsis thalian	0.335	0.049	0.42	0.00016
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.207	0.024	0.448	0.00025

TAIR|locus:2020457 BRL1 "BRI1 like" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query:    65 CGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQ 104
             C W G++C  +GRI  + L  S + G L  +N +  PNLQ
Sbjct:    66 CSWRGVSCSDDGRIVGLDLRNSGLTGTLNLVNLTALPNLQ 105

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
 Identities = 33/130 (25%), Positives = 59/130 (45%)

Query:    11 AVIVFIWAALTL-LIVHVASATNISIHVAASEIERQALLNSGWWKDRIPHNTSDHCGWVG 69
             A+ +F++ + +   IV ++S T   I    S +E  +LL+S  W      +++ HC WVG
Sbjct:     6 ALFLFLFFSFSSSAIVDLSSETTSLISFKRS-LENPSLLSS--WN---VSSSASHCDWVG 59

Query:    70 ITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYXXXXXXXXXXXXXXXXXXXXXXKY 129
             +TC   GR+  + L    ++G++ +   S   NL+                       + 
Sbjct:    60 VTC-LLGRVNSLSLPSLSLRGQIPK-EISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQT 117

Query:   130 LDLDRNNLSG 139
             LDL  N+L+G
Sbjct:   118 LDLSGNSLTG 127

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2040471 SERK5 "somatic embryogenesis receptor-like kinase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
 Identities = 35/130 (26%), Positives = 52/130 (40%)

Query:    15 FIWAALTL-LIVHVASATNISIHVAASEIERQALLNSGWWKDRIPHN-TSDH---CGWVG 69
             FIW  L L  +  V   T +   +A      ++ L+SG   + I  +  + H   C W  
Sbjct:     9 FIWLILFLDFVSRVTGKTQVDALIAL-----RSSLSSGDHTNNILQSWNATHVTPCSWFH 63

Query:    70 ITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYXXXXXXXXXXXXXXXXXXXXXXKY 129
             +TC+ E  +T + L  + + GEL     +  PNLQY                        
Sbjct:    64 VTCNTENSVTRLDLGSANLSGELVP-QLAQLPNLQYLELFNNNITGEIPEELGDLMELVS 122

Query:   130 LDLDRNNLSG 139
             LDL  NN+SG
Sbjct:   123 LDLFANNISG 132

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

TAIR|locus:2156992 AT5G49770 [Arabidopsis thaliana (taxid:3702)]

 Score = 89 (36.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 21/50 (42%), Positives = 27/50 (54%)

Query:    45 QALLNSGWWKDRIPHNTSDHCG--WVGITCDYEGRITDIGLAESKIKGEL 92
             QAL N  W        +SD CG  WVGITC+ + R+  I L    +KG+L
Sbjct:    36 QALKNE-WDTLSKSWKSSDPCGTEWVGITCNNDNRVVSISLTNRNLKGKL 84

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 87 (35.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query:    64 HCGWVGITCDYEGRITDIGLAESKIKGEL 92
             HC W GITCD  G +  + L E +++G L
Sbjct:    60 HCNWTGITCDSTGHVVSVSLLEKQLEGVL 88

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_II000069 hypothetical protein (847 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	140
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-07
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	6e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.6 bits (160), Expect = 2e-13
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 61  TSDHCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQ 120
           ++D C W GITC+   R+  I L+   I G++    F   P +Q ++LSNN LSG I   
Sbjct: 54  SADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDD 112

Query: 121 IGSLS-NLKYLDLDRNNLSG 139
           I + S +L+YL+L  NN +G
Sbjct: 113 IFTTSSSLRYLNLSNNNFTG 132

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 8e-08
 Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 81  IGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
           I L+ + I+G +   +     +L+ LDLS N+ +GSI   +G L++L+ L+L+ N+LSG 
Sbjct: 447 INLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.2 bits (112), Expect = 6e-07
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 5/53 (9%)

Query: 88  IKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
           I  ELG++      +L+++ L  NNLSG I  +IG L++L +LDL  NNL+G 
Sbjct: 204 IPRELGQMK-----SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251

Length = 968

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 43.2 bits (103), Expect = 6e-07
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            NL+ LDLSNN ++   L  + +L NL+ LDL  N ++
Sbjct: 1   TNLETLDLSNNQITD--LPPLSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 8e-07
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 6/78 (7%)

Query: 67  WVGITCDYEGR-----ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQI 121
           W G  C ++       I  +GL    ++G +   + S   +LQ ++LS N++ G+I   +
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSL 462

Query: 122 GSLSNLKYLDLDRNNLSG 139
           GS+++L+ LDL  N+ +G
Sbjct: 463 GSITSLEVLDLSYNSFNG 480

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 78  ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137
           +  + L+E+K+ GE+     SC   L  LDLS+N LSG I +    +  L  LDL +N L
Sbjct: 501 LMQLKLSENKLSGEIPDELSSC-KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559

Query: 138 SGE 140
           SGE
Sbjct: 560 SGE 562

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 77  RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNN 136
           R+ ++ L+ ++  G + R        L  L LS N LSG I  ++ S   L  LDL  N 
Sbjct: 476 RLENLDLSRNQFSGAVPR-KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534

Query: 137 LSGE 140
           LSG+
Sbjct: 535 LSGQ 538

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 81  IGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
           + L ++   GEL    F+  P + +LD+SNNNL G I S+   + +L+ L L RN   G 
Sbjct: 409 VRLQDNSFSGELPS-EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 5/52 (9%)

Query: 88  IKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           I  E+G L      +L +LDL  NNL+G I S +G+L NL+YL L +N LSG
Sbjct: 228 IPYEIGGLT-----SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 20/43 (46%), Positives = 25/43 (58%)

Query: 98  SCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
           +  P LQ L L +N  SG I   +G  +NL  LDL  NNL+GE
Sbjct: 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 23/39 (58%), Positives = 24/39 (61%)

Query: 102 NLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
           NLQYL L  N LSG I   I SL  L  LDL  N+LSGE
Sbjct: 261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 5/54 (9%)

Query: 87  KIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
           KI   L  L      +L++L L++N L G I  ++G + +LK++ L  NNLSGE
Sbjct: 179 KIPNSLTNLT-----SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query: 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137
           PNL+ LDLS NNL+         L +L+ LDL  NNL
Sbjct: 24  PNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 4e-04
 Identities = 19/37 (51%), Positives = 22/37 (59%)

Query: 102 NLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           NL+ LDLSNN L+         L NLK LDL  NNL+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT 37

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
           F +L+ LDL  N L G I + + +L++L++L L  N L G+
Sbjct: 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ 203

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 77  RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNN 136
           ++  + L+ +++ G++   +FS  P L  LDLS N LSG I   +G++ +L  +++  N+
Sbjct: 524 KLVSLDLSHNQLSGQI-PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582

Query: 137 LSG 139
           L G
Sbjct: 583 LHG 585

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           P+LQ L L+ N   G +    GS   L+ LDL RN  SG
Sbjct: 452 PSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSG 489

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.66
PLN03150	623	hypothetical protein; Provisional	99.47
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.91
PLN03150	623	hypothetical protein; Provisional	98.86
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.62
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.55
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.48
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.79
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.74
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.64
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.55
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.53
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.36
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.34
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.34
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.22
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.21
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.18
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.12
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.97
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.69
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.55
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.54
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.49
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.49
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.41
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.41
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.38
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.14
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.12
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.95
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	95.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	95.81
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	95.07
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	95.05
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	94.76
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.72
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.65
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.54
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.42
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	94.21
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.03
smart00370	26	LRR Leucine-rich repeats, outliers.	93.95
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.95
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	93.6
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.04
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	92.91
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	92.06
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.76
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	91.4
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	90.92
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	90.65
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	88.91
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	87.36
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	87.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	86.96
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	86.6
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	85.22
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	83.73
KOG0473	326	consensus Leucine-rich repeat protein [Function un	80.57
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	80.5

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.66  E-value=4.5e-16  Score=135.11  Aligned_cols=105  Identities=30%  Similarity=0.465  Sum_probs=90.7

Q ss_pred             cchhhhhhHHHHHHHhcCCCCCCCCCCCCCCCCCccccccCCCCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCc
Q 043483           33 ISIHVAASEIERQALLNSGWWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNN  112 (140)
Q Consensus        33 ~~~~~~~l~~~~~~l~~~~~~~~~~w~~~~~~C~w~gv~C~~~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~  112 (140)
                      ++.|..++.++++.+.+ +.....+|....++|.|.||+|+..++|+.|+|+++++.|.++. .+..+++|++|++++|.
T Consensus        27 ~~~~~~~l~~~~~~~~~-~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~  104 (968)
T PLN00113         27 HAEELELLLSFKSSIND-PLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQ  104 (968)
T ss_pred             CHHHHHHHHHHHHhCCC-CcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCc
Confidence            33568899999999854 33446789877899999999999888999999999999998866 78999999999999999


Q ss_pred             cccccchhhc-CCCCCCEEeCcCCcCcC
Q 043483          113 LSGSILSQIG-SLSNLKYLDLDRNNLSG  139 (140)
Q Consensus       113 l~G~iP~~~~-~l~~L~~L~ls~N~lsG  139 (140)
                      +.|.+|..+. ++++|++|++++|+++|
T Consensus       105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~  132 (968)
T PLN00113        105 LSGPIPDDIFTTSSSLRYLNLSNNNFTG  132 (968)
T ss_pred             cCCcCChHHhccCCCCCEEECcCCcccc
Confidence            9999998765 89999999999998876

>PLN03150 hypothetical protein; Provisional

Probab=99.47  E-value=2e-13  Score=114.43  Aligned_cols=103  Identities=27%  Similarity=0.459  Sum_probs=65.1

Q ss_pred             cccchhhhhhHHHHHHHhcCCCCCCCCCCCCCCCC-----CccccccCC---C--CCeeEEecCCCCCccccCCccCCCC
Q 043483           31 TNISIHVAASEIERQALLNSGWWKDRIPHNTSDHC-----GWVGITCDY---E--GRITDIGLAESKIKGELGRLNFSCF  100 (140)
Q Consensus        31 ~~~~~~~~~l~~~~~~l~~~~~~~~~~w~~~~~~C-----~w~gv~C~~---~--~~v~~L~L~~~~l~g~l~~~~l~~l  100 (140)
                      +..+.|+.++...|+.+....   ..+|. + ++|     .|.||.|..   .  ..|+.|+|+++.+.|.+|. .+..+
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~---~~~W~-g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~-~i~~L  441 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPL---RFGWN-G-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN-DISKL  441 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCcc---cCCCC-C-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH-HHhCC
Confidence            445567888888888875432   13675 3 455     799999952   1  2477777777777776665 45555


Q ss_pred             CCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483          101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus       101 ~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      ++|+.|+|++|.+.|.+|+.++++++|+.|+|++|+++|
T Consensus       442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg  480 (623)
T PLN03150        442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG  480 (623)
T ss_pred             CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC
Confidence            556666665555555555555555555555555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.91  E-value=2e-09  Score=64.00  Aligned_cols=60  Identities=43%  Similarity=0.671  Sum_probs=53.1

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL  137 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l  137 (140)
                      +++.|++++|.+. .+++..|..+++|++|++++|.+...-|..|.++++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999998 56655799999999999999999966666899999999999999986

...

>PLN03150 hypothetical protein; Provisional

Probab=98.86  E-value=2.8e-09  Score=89.64  Aligned_cols=64  Identities=34%  Similarity=0.627  Sum_probs=60.6

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcCC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE  140 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG~  140 (140)
                      .+++.|+|++|.+.|.+|. .++.+++|+.|+|++|+++|.+|..++++++|++|+|++|+|+|.
T Consensus       442 ~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~  505 (623)
T PLN03150        442 RHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR  505 (623)
T ss_pred             CCCCEEECCCCcccCcCCh-HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccccc
Confidence            5789999999999999987 799999999999999999999999999999999999999999874

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.62  E-value=2.3e-08  Score=55.54  Aligned_cols=39  Identities=28%  Similarity=0.336  Sum_probs=28.8

Q ss_pred             hhhhhhHHHHHHHhcCCCCCCCCCCCC--CCCCCccccccC
Q 043483           35 IHVAASEIERQALLNSGWWKDRIPHNT--SDHCGWVGITCD   73 (140)
Q Consensus        35 ~~~~~l~~~~~~l~~~~~~~~~~w~~~--~~~C~w~gv~C~   73 (140)
                      .|..+|.++|+++..++...+.+|...  .++|+|.||+|+
T Consensus         3 ~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    3 QDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             HHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            578899999999987666778899865  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.55  E-value=1e-07  Score=53.21  Aligned_cols=37  Identities=41%  Similarity=0.643  Sum_probs=31.0

Q ss_pred             CCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483          101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus       101 ~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ++|++|++++|+++ .+|+.++++++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            47899999999999 68888999999999999999876

...

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.48  E-value=1.6e-07  Score=82.15  Aligned_cols=61  Identities=39%  Similarity=0.604  Sum_probs=30.0

Q ss_pred             eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      ++.|+|++|.+.|.+|. .+..+++|++|++++|.++|.+|..+..+++|+.||+++|+++|
T Consensus       501 L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  561 (968)
T PLN00113        501 LMQLKLSENKLSGEIPD-ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG  561 (968)
T ss_pred             cCEEECcCCcceeeCCh-HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence            33444444444444433 34445555555555555555555555555555555555555543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.79  E-value=1.2e-05  Score=64.12  Aligned_cols=62  Identities=27%  Similarity=0.336  Sum_probs=53.4

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeC-cCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDL-DRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~l-s~N~ls  138 (140)
                      ...++|+|..|.|+ .||+-.|..+++|+.|||++|+++-.-|.+|..+.+|..|-+ ++|+++
T Consensus        67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            36899999999999 677768999999999999999999888999999999877655 558764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.74  E-value=1.8e-05  Score=46.64  Aligned_cols=38  Identities=50%  Similarity=0.681  Sum_probs=33.0

Q ss_pred             CCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483          101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus       101 ~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      |+|++|++++|++...-+..|.++++|++|++++|.++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~   38 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT   38 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC
Confidence            57899999999999544457899999999999999886

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.72  E-value=3.2e-05  Score=55.55  Aligned_cols=59  Identities=36%  Similarity=0.549  Sum_probs=18.9

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhh-cCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~-~~l~~L~~L~ls~N~ls  138 (140)
                      .+++.|+|++|.+. .+.  .+..+++|+.|++++|.++ .+++.+ ..+++|++|++++|++.
T Consensus        42 ~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~  101 (175)
T PF14580_consen   42 DKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKIS  101 (175)
T ss_dssp             TT--EEE-TTS--S---T--T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---
T ss_pred             cCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCC
Confidence            35666677777666 232  2555666666666666666 343333 24666666666666653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.64  E-value=8.9e-06  Score=58.72  Aligned_cols=57  Identities=33%  Similarity=0.533  Sum_probs=37.9

Q ss_pred             eEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           79 TDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        79 ~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ..+++.+|.+. .+|. .+..++.|+.|+++-|++. ..|..||.++.|++|||++|+++
T Consensus        59 evln~~nnqie-~lp~-~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~  115 (264)
T KOG0617|consen   59 EVLNLSNNQIE-ELPT-SISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLN  115 (264)
T ss_pred             hhhhcccchhh-hcCh-hhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccc
Confidence            33444444444 2333 4666777777777777776 67777888888888888888775

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.55  E-value=9.7e-05  Score=41.04  Aligned_cols=40  Identities=35%  Similarity=0.606  Sum_probs=32.2

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccch
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILS  119 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~  119 (140)
                      .++.|++++|++. .+|+ .+.++++|+.|++++|.++ .+|+
T Consensus         2 ~L~~L~l~~N~i~-~l~~-~l~~l~~L~~L~l~~N~i~-~i~~   41 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPP-ELSNLPNLETLNLSNNPIS-DISP   41 (44)
T ss_dssp             T-SEEEETSSS-S-SHGG-HGTTCTTSSEEEETSSCCS-BEGG
T ss_pred             cceEEEccCCCCc-ccCc-hHhCCCCCCEEEecCCCCC-CCcC
Confidence            5788999999999 5665 5999999999999999998 4543

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.53  E-value=1.1e-05  Score=58.27  Aligned_cols=61  Identities=31%  Similarity=0.484  Sum_probs=54.5

Q ss_pred             CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ..+++.+.|+.|.++ .+|+ .+..+.+|+.|++.+|++. .+|..++.+++|+.|+++-|++.
T Consensus        32 ~s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~   92 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN   92 (264)
T ss_pred             hhhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh
Confidence            357899999999998 4555 6999999999999999999 79999999999999999988874

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.36  E-value=0.00015  Score=62.81  Aligned_cols=39  Identities=26%  Similarity=0.307  Sum_probs=33.3

Q ss_pred             CCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcCC
Q 043483          101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE  140 (140)
Q Consensus       101 ~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG~  140 (140)
                      .+|+.|++++|+++ .+|..+.++++|+.|+|++|.|+|.
T Consensus       422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence            35677788888887 7899999999999999999999873

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.34  E-value=0.00016  Score=51.88  Aligned_cols=58  Identities=31%  Similarity=0.530  Sum_probs=17.4

Q ss_pred             CCeeEEecCCCCCccccCCccCC-CCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFS-CFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~-~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+.+.|+|.++.++ .+.  .++ .+.+|+.|++++|.+. .++ .+..+++|++|++++|+++
T Consensus        19 ~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~   77 (175)
T PF14580_consen   19 VKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS   77 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---
T ss_pred             cccccccccccccc-ccc--chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC
Confidence            35788999999888 333  355 5789999999999999 454 4788999999999999986

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.34  E-value=7.6e-05  Score=59.95  Aligned_cols=80  Identities=25%  Similarity=0.290  Sum_probs=60.9

Q ss_pred             CCCCCCCCCCccccccCC---------------CCCeeEEecCCCCCccccC-----------------------CccCC
Q 043483           57 IPHNTSDHCGWVGITCDY---------------EGRITDIGLAESKIKGELG-----------------------RLNFS   98 (140)
Q Consensus        57 ~w~~~~~~C~w~gv~C~~---------------~~~v~~L~L~~~~l~g~l~-----------------------~~~l~   98 (140)
                      +|. +...|.+...+|-.               ..+++.++++.|.+.- +|                       +--+.
T Consensus       425 sfv-~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~  502 (565)
T KOG0472|consen  425 SFV-PLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLK  502 (565)
T ss_pred             ccc-hHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccccccccChHHhh
Confidence            455 55667666666621               1246778888887652 22                       11177


Q ss_pred             CCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           99 CFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        99 ~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      ++.+|..|||.+|.+. +||+.+++|++|++|++++|.|+-
T Consensus       503 nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr~  542 (565)
T KOG0472|consen  503 NMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFRQ  542 (565)
T ss_pred             hhhhcceeccCCCchh-hCChhhccccceeEEEecCCccCC
Confidence            8999999999999999 899999999999999999999873

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.22  E-value=0.00015  Score=60.68  Aligned_cols=61  Identities=21%  Similarity=0.308  Sum_probs=50.6

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+..|+|..|+++.. ..-.+.+|+.|+.|++++|.+....+..|...++|++|||++|+++
T Consensus       270 kme~l~L~~N~l~~v-n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~  330 (873)
T KOG4194|consen  270 KMEHLNLETNRLQAV-NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT  330 (873)
T ss_pred             ccceeecccchhhhh-hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence            567788888887732 2225888999999999999999888899999999999999999875

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.21  E-value=0.00019  Score=33.88  Aligned_cols=22  Identities=64%  Similarity=0.883  Sum_probs=18.3

Q ss_pred             CCcEEEccCCccccccchhhcCC
Q 043483          102 NLQYLDLSNNNLSGSILSQIGSL  124 (140)
Q Consensus       102 ~L~~L~l~~n~l~G~iP~~~~~l  124 (140)
                      +|++||+++|+++ .||+.|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            5889999999999 899887654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.18  E-value=7.8e-05  Score=63.04  Aligned_cols=60  Identities=33%  Similarity=0.422  Sum_probs=46.7

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ....|+|++|++. +||..-+.+|+.|-+|||++|++. .+|+.+..+..|++|+|++|.|.
T Consensus       127 n~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  127 NSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             CcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh
Confidence            3455667777665 455544778888889999999998 78888899999999999998763

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.12  E-value=9.5e-05  Score=51.51  Aligned_cols=62  Identities=26%  Similarity=0.400  Sum_probs=48.3

Q ss_pred             CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .-+++.++|++|.+.. +|+---..++.++.|++.+|.++ .+|.++..++.|+.|+++.|.|.
T Consensus        52 ~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             CceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence            4578889999998873 34312334557888999999998 78999999999999999998875

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.97  E-value=0.0003  Score=56.60  Aligned_cols=62  Identities=32%  Similarity=0.510  Sum_probs=47.0

Q ss_pred             cCCCCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483           72 CDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL  137 (140)
Q Consensus        72 C~~~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l  137 (140)
                      |..-.++-.+||..|.+. .+|. ++..+++|.+||+++|.+++ +|.++|++ .|+.|.+.+|.+
T Consensus       248 ~~~L~~l~vLDLRdNklk-e~Pd-e~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  248 LKHLNSLLVLDLRDNKLK-EVPD-EICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             hcccccceeeeccccccc-cCch-HHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCch
Confidence            334457777888888877 5565 68888888888888888884 77778888 788888887765

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.88  E-value=0.00038  Score=54.35  Aligned_cols=57  Identities=28%  Similarity=0.483  Sum_probs=37.2

Q ss_pred             eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ++.+||++|.++ .+-. ...-+|.++.|++++|.+. .+-. +..+.+|+.||||+|.++
T Consensus       286 LtelDLS~N~I~-~iDE-SvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QIDE-SVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             hhhccccccchh-hhhh-hhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH
Confidence            466777777766 2222 3555677777777777776 2322 666777777777777664

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.79  E-value=8e-05  Score=63.00  Aligned_cols=60  Identities=25%  Similarity=0.357  Sum_probs=42.8

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccc-cccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLS-GSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~-G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ++..|+|+.|.|+ .+|. .+++|+.|+.|++.+|+++ .-||+.||++.+|+++..++|.|.
T Consensus       269 ~lEtLNlSrNQLt-~LP~-avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE  329 (1255)
T KOG0444|consen  269 NLETLNLSRNQLT-VLPD-AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE  329 (1255)
T ss_pred             hhhhhccccchhc-cchH-HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence            3444555555555 3454 5788888888888888875 348888888888888888888764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.69  E-value=0.0011  Score=50.55  Aligned_cols=38  Identities=42%  Similarity=0.634  Sum_probs=17.8

Q ss_pred             CCCcEEEccCCccccc----cchhhcCCCCCCEEeCcCCcCc
Q 043483          101 PNLQYLDLSNNNLSGS----ILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus       101 ~~L~~L~l~~n~l~G~----iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ++|++|++++|.+.+.    ++..+..+++|++|++++|.++
T Consensus       193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            3555555555554422    2223344455555555555443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.55  E-value=0.02  Score=49.71  Aligned_cols=42  Identities=7%  Similarity=-0.059  Sum_probs=25.0

Q ss_pred             hhhccccchhhhhhHHHHHHHhcCCCCC--CCCCCCCCCCCCcc
Q 043483           27 VASATNISIHVAASEIERQALLNSGWWK--DRIPHNTSDHCGWV   68 (140)
Q Consensus        27 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~--~~~w~~~~~~C~w~   68 (140)
                      ..+......++..+.+..+.|..+++..  -..|....++|.-.
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~   98 (754)
T PRK15370         55 HPPETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILS   98 (754)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccC
Confidence            3344555666777777777776555421  23477677788543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.54  E-value=0.0012  Score=50.36  Aligned_cols=62  Identities=23%  Similarity=0.433  Sum_probs=37.8

Q ss_pred             CeeEEecCCCCCccc----cCCccCCCC-CCCcEEEccCCccccc----cchhhcCCCCCCEEeCcCCcCcC
Q 043483           77 RITDIGLAESKIKGE----LGRLNFSCF-PNLQYLDLSNNNLSGS----ILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~----l~~~~l~~l-~~L~~L~l~~n~l~G~----iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      +++.|+++++.+.+.    +.. .+..+ ++|+.|++++|.+++.    ++..+..+++|++|++++|.+++
T Consensus       109 ~L~~L~ls~~~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  179 (319)
T cd00116         109 SLQELKLNNNGLGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD  179 (319)
T ss_pred             cccEEEeeCCccchHHHHHHHH-HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence            466777776666521    111 23445 6777777777777743    33345566777788887777763

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.49  E-value=0.00099  Score=53.48  Aligned_cols=61  Identities=28%  Similarity=0.273  Sum_probs=31.9

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL  137 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l  137 (140)
                      .+++.|+|++|.+++.-+. .|..+..++.|.|..|++.-.--..|.++..|++|+|.+|++
T Consensus       274 ~~L~~lnlsnN~i~~i~~~-aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~i  334 (498)
T KOG4237|consen  274 PNLRKLNLSNNKITRIEDG-AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQI  334 (498)
T ss_pred             ccceEeccCCCccchhhhh-hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCee
Confidence            4778888888888743222 344444444444444444422222344445555555555544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.49  E-value=0.0003  Score=61.30  Aligned_cols=37  Identities=19%  Similarity=0.340  Sum_probs=17.0

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLS  114 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~  114 (140)
                      ++..|+|+.|.|. .+|+..+.++..|+.|+||+|+++
T Consensus       384 hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~  420 (1081)
T KOG0618|consen  384 HLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT  420 (1081)
T ss_pred             ceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh
Confidence            4556666666554 233323344444444444444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.41  E-value=0.0022  Score=54.00  Aligned_cols=60  Identities=30%  Similarity=0.492  Sum_probs=41.8

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccch-hhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILS-QIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~-~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+..|+|++|.++ .++.-.|..+.+|..|.|++|.++ .+|. .|.++++|+.|||.+|++.
T Consensus       174 ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  174 NIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             CceEEeecccccc-ccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccccee
Confidence            3455555555554 233334777888888888888888 5665 4666999999999888764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.41  E-value=0.0013  Score=52.20  Aligned_cols=58  Identities=36%  Similarity=0.537  Sum_probs=33.2

Q ss_pred             CeeEEecCCCCCccccCCccCCCCC-CCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFP-NLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL  137 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~-~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l  137 (140)
                      .++.+++.++.+. .+++ ....++ +|+.|++++|.+. .+|..+..++.|+.|++++|++
T Consensus       117 ~l~~L~l~~n~i~-~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886         117 NLTSLDLDNNNIT-DIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             ceeEEecCCcccc-cCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCchh
Confidence            4666666666665 3333 244442 5666666666666 4555556666666666666654

>PLN03210 Resistant to P

Probab=96.38  E-value=0.0067  Score=54.86  Aligned_cols=58  Identities=31%  Similarity=0.310  Sum_probs=39.8

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRN  135 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N  135 (140)
                      .+++.++|+++..-+.+|.  +..+++|+.|++++|..-..+|..++++++|+.|+++++
T Consensus       634 ~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c  691 (1153)
T PLN03210        634 TGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC  691 (1153)
T ss_pred             CCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence            3556666665543344443  667778888888777666678887888888888888764

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.14  E-value=0.00055  Score=59.70  Aligned_cols=56  Identities=30%  Similarity=0.449  Sum_probs=27.1

Q ss_pred             eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483           78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL  137 (140)
Q Consensus        78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l  137 (140)
                      ++.|+|+||.|. .+|. .+.+++.|+.|...+|++. .+| ++.+++.|+++|+|.|+|
T Consensus       409 LeeL~LSGNkL~-~Lp~-tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L  464 (1081)
T KOG0618|consen  409 LEELNLSGNKLT-TLPD-TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNL  464 (1081)
T ss_pred             hHHHhcccchhh-hhhH-HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchh
Confidence            444455555544 3332 3444555555555555554 344 445555555555555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.12  E-value=0.0023  Score=56.36  Aligned_cols=57  Identities=28%  Similarity=0.471  Sum_probs=30.5

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRN  135 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N  135 (140)
                      .++.|||++|.--+.+|. .+++|-+|++|+++...+. .+|..++++..|.+|++.++
T Consensus       572 ~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~  628 (889)
T KOG4658|consen  572 LLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVT  628 (889)
T ss_pred             ceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccc
Confidence            344555554433344444 4555555555555555555 55555555555555555443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.04  E-value=0.0098  Score=51.79  Aligned_cols=15  Identities=47%  Similarity=0.727  Sum_probs=10.1

Q ss_pred             CCCcEEEccCCcccc
Q 043483          101 PNLQYLDLSNNNLSG  115 (140)
Q Consensus       101 ~~L~~L~l~~n~l~G  115 (140)
                      ++|++|++++|++.+
T Consensus       302 ~~L~~LdLS~N~L~~  316 (788)
T PRK15387        302 PGLQELSVSDNQLAS  316 (788)
T ss_pred             cccceeECCCCcccc
Confidence            456777777777664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.95  E-value=0.0054  Score=48.63  Aligned_cols=59  Identities=39%  Similarity=0.609  Sum_probs=48.9

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .++.++++.|.+. .++. ++..+++|+.|++++|.+. .+|...+.++.|+.|++++|+++
T Consensus       141 nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~  199 (394)
T COG4886         141 NLKELDLSDNKIE-SLPS-PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS  199 (394)
T ss_pred             hcccccccccchh-hhhh-hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc
Confidence            6888888888877 3433 6889999999999999998 68887778999999999999875

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=95.87  E-value=0.012  Score=51.07  Aligned_cols=36  Identities=31%  Similarity=0.494  Sum_probs=24.0

Q ss_pred             CCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483          101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus       101 ~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      +.|+.|++++|++. .+|..+.  ++|++|++++|+|++
T Consensus       262 s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        262 SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT  297 (754)
T ss_pred             CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc
Confidence            35677777777777 4666543  467777777777753

>PLN03210 Resistant to P

Probab=95.81  E-value=0.012  Score=53.19  Aligned_cols=57  Identities=23%  Similarity=0.242  Sum_probs=40.0

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRN  135 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N  135 (140)
                      .++.|+|+++...+.+|. .++++++|+.|+++++..-+.+|..+ ++++|+.|++++|
T Consensus       779 sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c  835 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPS-SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC  835 (1153)
T ss_pred             cchheeCCCCCCccccCh-hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence            567777777776666666 67888888888888766555677654 5666666666654

syringae 6; Provisional

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=95.07  E-value=0.0014  Score=45.73  Aligned_cols=58  Identities=28%  Similarity=0.389  Sum_probs=50.0

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL  137 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l  137 (140)
                      .++.++|.+|.++ .+|. ++..++.|+.|++..|.+. ..|..+..+.+|..||...|..
T Consensus        78 t~t~lNl~~neis-dvPe-E~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPE-ELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             hhhhhhcchhhhh-hchH-HHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence            5788999999998 5666 6999999999999999999 6788888899999999877754

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=95.05  E-value=0.0067  Score=50.86  Aligned_cols=43  Identities=28%  Similarity=0.461  Sum_probs=36.5

Q ss_pred             cCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcCC
Q 043483           96 NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE  140 (140)
Q Consensus        96 ~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG~  140 (140)
                      ++..|+ |..||++.|++. .||-.|.+|+.|++|-|.+|.|..+
T Consensus       207 El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  207 ELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             HHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence            355444 788999999999 7999999999999999999998753

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=94.76  E-value=0.0062  Score=51.04  Aligned_cols=57  Identities=32%  Similarity=0.516  Sum_probs=37.0

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL  137 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l  137 (140)
                      ..+.++|+.|.++ .+|. +++.|+ |+.|-+++|+++ .+|.+++.+..|..||.+.|.+
T Consensus       122 ~lt~l~ls~NqlS-~lp~-~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei  178 (722)
T KOG0532|consen  122 ALTFLDLSSNQLS-HLPD-GLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI  178 (722)
T ss_pred             HHHHhhhccchhh-cCCh-hhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhh
Confidence            4566677777766 3444 566666 666777777766 5666666666677777766654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.72  E-value=0.042  Score=40.60  Aligned_cols=56  Identities=32%  Similarity=0.509  Sum_probs=26.9

Q ss_pred             eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhc-CCCCCCEEeCcCCcC
Q 043483           78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIG-SLSNLKYLDLDRNNL  137 (140)
Q Consensus        78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~-~l~~L~~L~ls~N~l  137 (140)
                      ...|||++|.+. .++  .|..+++|..|.+++|.++. |-+.+. .+++|..|.|++|.+
T Consensus        44 ~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   44 FDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             cceecccccchh-hcc--cCCCccccceEEecCCccee-eccchhhhccccceEEecCcch
Confidence            345556555554 111  24445555556666666553 222222 334455555555544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.65  E-value=0.024  Score=24.86  Aligned_cols=13  Identities=69%  Similarity=0.915  Sum_probs=5.5

Q ss_pred             CCcEEEccCCccc
Q 043483          102 NLQYLDLSNNNLS  114 (140)
Q Consensus       102 ~L~~L~l~~n~l~  114 (140)
                      +|+.|++++|+|.
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555544

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.54  E-value=0.018  Score=45.11  Aligned_cols=73  Identities=22%  Similarity=0.290  Sum_probs=48.5

Q ss_pred             CCCccccccC--CCCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccc-hhhcCCCCCCEEeCcCCcC
Q 043483           64 HCGWVGITCD--YEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSIL-SQIGSLSNLKYLDLDRNNL  137 (140)
Q Consensus        64 ~C~w~gv~C~--~~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP-~~~~~l~~L~~L~ls~N~l  137 (140)
                      ...|.-|.|-  .-.+++.|+|+.|.++..|...| ..+.+|+.|-|.+..+...-- ..+..++.++.|++|.|.+
T Consensus        83 iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen   83 ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             hccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            3446655553  45678888888888876655533 456677788777777764333 3356677888888888854

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.42  E-value=0.022  Score=44.56  Aligned_cols=63  Identities=33%  Similarity=0.404  Sum_probs=49.0

Q ss_pred             CCeeEEecCCCCCcc--ccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKG--ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g--~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+|..+||.+|.++.  .++. -+.++|+|+.|+++.|.+.-.|-..-..+.+|++|-|.+..|+.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w  135 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSW  135 (418)
T ss_pred             hhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCCh
Confidence            589999999999872  2222 27889999999999999986665443577889999988877754

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=94.21  E-value=0.024  Score=44.51  Aligned_cols=36  Identities=33%  Similarity=0.571  Sum_probs=29.4

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLS  114 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~  114 (140)
                      ..|+.++++.|++. .+.  .+..|++|+.|||++|.++
T Consensus       307 Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  307 PKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             cceeEEecccccee-eeh--hhhhcccceEeecccchhH
Confidence            57899999999987 333  3778889999999999876

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.03  E-value=0.013  Score=50.70  Aligned_cols=35  Identities=46%  Similarity=0.521  Sum_probs=20.9

Q ss_pred             CcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483          103 LQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus       103 L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      |+.|.+.+|.++- + ..+.++.+|+.||+++|-++|
T Consensus       234 L~~L~lrnN~l~t-L-~gie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  234 LQLLNLRNNALTT-L-RGIENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             heeeeecccHHHh-h-hhHHhhhhhhccchhHhhhhc
Confidence            4444444444431 1 135667888888888887765

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.95  E-value=0.053  Score=26.08  Aligned_cols=20  Identities=60%  Similarity=0.795  Sum_probs=15.9

Q ss_pred             CCCCcEEEccCCccccccchh
Q 043483          100 FPNLQYLDLSNNNLSGSILSQ  120 (140)
Q Consensus       100 l~~L~~L~l~~n~l~G~iP~~  120 (140)
                      +++|++|+|++|.+. .+|+.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            467899999999988 56764

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.95  E-value=0.053  Score=26.08  Aligned_cols=20  Identities=60%  Similarity=0.795  Sum_probs=15.9

Q ss_pred             CCCCcEEEccCCccccccchh
Q 043483          100 FPNLQYLDLSNNNLSGSILSQ  120 (140)
Q Consensus       100 l~~L~~L~l~~n~l~G~iP~~  120 (140)
                      +++|++|+|++|.+. .+|+.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            467899999999988 56764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=93.60  E-value=0.042  Score=44.19  Aligned_cols=59  Identities=32%  Similarity=0.352  Sum_probs=36.4

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ..++.+++.+|.|... .. .+..+++|++|++++|.+....+  +..++.|+.|++++|.++
T Consensus        95 ~~l~~l~l~~n~i~~i-~~-~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~  153 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKI-EN-LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS  153 (414)
T ss_pred             cceeeeeccccchhhc-cc-chhhhhcchheeccccccccccc--hhhccchhhheeccCcch
Confidence            4566777777777632 21 15667777777777777764322  455555666777666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.04  E-value=0.064  Score=40.74  Aligned_cols=35  Identities=46%  Similarity=0.599  Sum_probs=16.4

Q ss_pred             CCCCcEEEccCCccccccchh---hcCCCCCCEEeCcCCc
Q 043483          100 FPNLQYLDLSNNNLSGSILSQ---IGSLSNLKYLDLDRNN  136 (140)
Q Consensus       100 l~~L~~L~l~~n~l~G~iP~~---~~~l~~L~~L~ls~N~  136 (140)
                      +++|++++++.|++.-  +++   +..+.+|..||+.++.
T Consensus        90 ~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   90 APNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             CCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCC
Confidence            3555555555555541  221   2334445555554443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=92.91  E-value=0.054  Score=47.93  Aligned_cols=62  Identities=32%  Similarity=0.452  Sum_probs=47.5

Q ss_pred             CeeEEecCCCCC-ccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKI-KGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l-~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .++.+-+..|.. ...++...|..++.|+.|||++|.=-+.+|..++.+-+|++|++++..++
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~  608 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS  608 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc
Confidence            466666666541 11222223788999999999998888999999999999999999988764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=92.06  E-value=0.067  Score=43.03  Aligned_cols=58  Identities=34%  Similarity=0.407  Sum_probs=44.1

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+++.+++++|.|.. +.  .+..++.|+.|++++|.+.. ++ .+..++.|+.+++++|++.
T Consensus       118 ~~L~~L~ls~N~I~~-i~--~l~~l~~L~~L~l~~N~i~~-~~-~~~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  118 VNLQVLDLSFNKITK-LE--GLSTLTLLKELNLSGNLISD-IS-GLESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             hcchheecccccccc-cc--chhhccchhhheeccCcchh-cc-CCccchhhhcccCCcchhh
Confidence            467888999998873 22  36777779999999999883 33 3556888999999998865

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.76  E-value=0.046  Score=25.84  Aligned_cols=19  Identities=53%  Similarity=0.693  Sum_probs=10.4

Q ss_pred             CCCcEEEccCCccccccch
Q 043483          101 PNLQYLDLSNNNLSGSILS  119 (140)
Q Consensus       101 ~~L~~L~l~~n~l~G~iP~  119 (140)
                      ++|++|++++|.+++.-..
T Consensus         2 ~~L~~L~l~~n~i~~~g~~   20 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGAS   20 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHH
Confidence            4567777777776654443

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=91.40  E-value=0.25  Score=36.64  Aligned_cols=60  Identities=28%  Similarity=0.406  Sum_probs=29.1

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccc--cccchhhcCCCCCCEEeCcCCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLS--GSILSQIGSLSNLKYLDLDRNNL  137 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~--G~iP~~~~~l~~L~~L~ls~N~l  137 (140)
                      .++..|.|.+|+|.. |.+.--..+++|+.|.|.+|.+.  |.+-+ +..+++|++|.+-.|..
T Consensus        64 ~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv  125 (233)
T KOG1644|consen   64 PRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPV  125 (233)
T ss_pred             cccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCch
Confidence            355566666666652 22101222345666666666654  23322 44555555555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=90.92  E-value=0.041  Score=47.74  Aligned_cols=40  Identities=35%  Similarity=0.527  Sum_probs=25.9

Q ss_pred             CCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           97 FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        97 l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +.-++.|+.|+|++|++.. .- .+-.+++|++|||++|.|.
T Consensus       183 Lqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~  222 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR  222 (1096)
T ss_pred             HHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc
Confidence            4445667777777777763 22 4666777777777777664

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.65  E-value=0.17  Score=38.52  Aligned_cols=42  Identities=36%  Similarity=0.563  Sum_probs=33.2

Q ss_pred             CCCCCCCcEEEccCC--ccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           97 FSCFPNLQYLDLSNN--NLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        97 l~~l~~L~~L~l~~n--~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +-.|++|++|.++.|  ...+.++.-..++++|++|+++.|++.
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            556778889999999  666777766667799999999998864

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=88.91  E-value=0.39  Score=23.45  Aligned_cols=13  Identities=46%  Similarity=0.767  Sum_probs=7.4

Q ss_pred             CCCCEEeCcCCcC
Q 043483          125 SNLKYLDLDRNNL  137 (140)
Q Consensus       125 ~~L~~L~ls~N~l  137 (140)
                      ++|+.|++++|++
T Consensus         2 ~~L~~L~L~~NkI   14 (26)
T smart00365        2 TNLEELDLSQNKI   14 (26)
T ss_pred             CccCEEECCCCcc
Confidence            4555666666554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=87.36  E-value=0.34  Score=39.66  Aligned_cols=61  Identities=18%  Similarity=0.385  Sum_probs=36.0

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCcccc-ccchh-----hcCCCCCCEEeCcCCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSG-SILSQ-----IGSLSNLKYLDLDRNNL  137 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G-~iP~~-----~~~l~~L~~L~ls~N~l  137 (140)
                      .+++|||++|++--.--..-.+.|+.|+.|+++.+.+.. .+|+.     ...+++|++|++..|++
T Consensus       247 ~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  247 TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             HHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            567778877776421100125666777777777666642 23332     34567777777777765

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=87.10  E-value=0.55  Score=23.07  Aligned_cols=14  Identities=43%  Similarity=0.662  Sum_probs=9.4

Q ss_pred             CCCCEEeCcCCcCc
Q 043483          125 SNLKYLDLDRNNLS  138 (140)
Q Consensus       125 ~~L~~L~ls~N~ls  138 (140)
                      ++|++|||++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            45777777777663

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=86.96  E-value=0.19  Score=39.94  Aligned_cols=40  Identities=33%  Similarity=0.394  Sum_probs=19.4

Q ss_pred             CCCCCCcEEEccCCccccccchh----hcCCCCCCEEeCcCCcC
Q 043483           98 SCFPNLQYLDLSNNNLSGSILSQ----IGSLSNLKYLDLDRNNL  137 (140)
Q Consensus        98 ~~l~~L~~L~l~~n~l~G~iP~~----~~~l~~L~~L~ls~N~l  137 (140)
                      -..++|++++||.|.|.-.-++.    +.+++.|++|+|.+|.+
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl  132 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL  132 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence            33445555555555554333322    23455555555555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=86.60  E-value=0.33  Score=42.04  Aligned_cols=23  Identities=9%  Similarity=0.172  Sum_probs=17.4

Q ss_pred             ccccccCCCCCeeEEecCCCCCc
Q 043483           67 WVGITCDYEGRITDIGLAESKIK   89 (140)
Q Consensus        67 w~gv~C~~~~~v~~L~L~~~~l~   89 (140)
                      +....|.+-..+..||+++.+++
T Consensus       164 dF~~lc~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  164 DFSQLCASFPNLRSLDISGTNIS  186 (699)
T ss_pred             hHHHHhhccCccceeecCCCCcc
Confidence            44566766678899999988876

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=85.22  E-value=0.86  Score=35.54  Aligned_cols=41  Identities=34%  Similarity=0.475  Sum_probs=28.4

Q ss_pred             CCCCCCCcEEEccCCccccccchh----hcCCCCCCEEeCcCCcC
Q 043483           97 FSCFPNLQYLDLSNNNLSGSILSQ----IGSLSNLKYLDLDRNNL  137 (140)
Q Consensus        97 l~~l~~L~~L~l~~n~l~G~iP~~----~~~l~~L~~L~ls~N~l  137 (140)
                      +-++|+|+..+||.|.|.-..|+.    +++-+.|++|.+++|.+
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            556777777777777777666654    34566777777777765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=83.73  E-value=0.36  Score=39.58  Aligned_cols=62  Identities=34%  Similarity=0.358  Sum_probs=29.5

Q ss_pred             CeeEEecCCCCCccccCCc-cCCCCCCCcEEEccCCccccccchhh-cCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRL-NFSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~-~l~~l~~L~~L~l~~n~l~G~iP~~~-~~l~~L~~L~ls~N~ls  138 (140)
                      +|+.+||+.|-+..--+-. -..+|++|+.|+++.|.+.-.+.+.. .-++.|+.|.|+...|+
T Consensus       147 ~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls  210 (505)
T KOG3207|consen  147 NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS  210 (505)
T ss_pred             cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCC
Confidence            4555555555443110000 13455666666666666653333221 24555566666555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=80.57  E-value=0.029  Score=42.52  Aligned_cols=42  Identities=10%  Similarity=-0.088  Sum_probs=31.0

Q ss_pred             cCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           96 NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        96 ~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +++++..++.+++.+|..+ ..|.++++.++++++++-.|.|.
T Consensus        83 d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   83 DAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             hHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            4666667777777777777 67878888888888887776653

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=80.50  E-value=1.1  Score=21.94  Aligned_cols=13  Identities=38%  Similarity=0.621  Sum_probs=9.4

Q ss_pred             CCCEEeCcCCcCc
Q 043483          126 NLKYLDLDRNNLS  138 (140)
Q Consensus       126 ~L~~L~ls~N~ls  138 (140)
                      +|+.|++++|+|+
T Consensus         3 ~L~~L~vs~N~Lt   15 (26)
T smart00364        3 SLKELNVSNNQLT   15 (26)
T ss_pred             ccceeecCCCccc
Confidence            5677777777775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	140
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.7 bits (213), Expect = 1e-20
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 15/113 (13%)

Query: 38  AASEIERQALLNSGWWKDRIPH--------NTSDHCGWVGITCDYEGRITDIGLAESKIK 89
            +   E   L++   +KD +P         +  + C + G+TC  + ++T I L+   + 
Sbjct: 8   QSLYREIHQLIS---FKDVLPDKNLLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLN 63

Query: 90  GELGRLN--FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
                ++        L+ L LSN++++GS+ S     ++L  LDL RN+LSG 
Sbjct: 64  VGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGP 115

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 24/64 (37%), Positives = 32/64 (50%)

Query: 77  RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNN 136
            +  + LAE+K  GE+          L  LDLS N+  G++    GS S L+ L L  NN
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329

Query: 137 LSGE 140
            SGE
Sbjct: 330 FSGE 333

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.2 bits (152), Expect = 2e-12
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
                 LQ+LD+S N LSG     I + + LK L++  N   G 
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.8 bits (151), Expect = 3e-12
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 78  ITDIGLAESKIKGEL-GRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNN 136
           +  + L+ +   G +   L  +    LQ L L NN  +G I   + + S L  L L  N 
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 137 LSGE 140
           LSG 
Sbjct: 430 LSGT 433

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 4e-12
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 93  GRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
           G ++ S   NL++LD+S+NN S  I   +G  S L++LD+  N LSG+
Sbjct: 192 GDVDVSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGD 238

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 5e-12
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
           E+G +       L  L+L +N++SGSI  ++G L  L  LDL  N L G 
Sbjct: 651 EIGSMP-----YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 5e-12
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
              L+ L L  N L G I  ++  +  L+ L LD N+L+GE
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.9 bits (146), Expect = 1e-11
 Identities = 21/40 (52%), Positives = 24/40 (60%)

Query: 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
             L  L LS N LSG+I S +GSLS L+ L L  N L GE
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
            NL  L LSNN+ SG+I +++G   +L +LDL+ N  +G 
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.0 bits (141), Expect = 5e-11
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
           F    ++ +LD+S N LSG I  +IGS+  L  L+L  N++SG 
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 7e-11
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 77  RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLS-NLKYLDLDRN 135
            +  + L+ +   GEL          L+ LDLS N  SG +   + +LS +L  LDL  N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378

Query: 136 NLSGE 140
           N SG 
Sbjct: 379 NFSGP 383

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 7e-11
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 77  RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIG--SLSNLKYLDLDR 134
            +  + L+ ++  GEL     +   +L  LDLS+NN SG IL  +     + L+ L L  
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403

Query: 135 NNLSGE 140
           N  +G+
Sbjct: 404 NGFTGK 409

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 19/39 (48%), Positives = 23/39 (58%)

Query: 102 NLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
           NL ++ LSNN L+G I   IG L NL  L L  N+ SG 
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 18/45 (40%), Positives = 23/45 (51%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
                  L  LDLS+N L G I   + +L+ L  +DL  NNLSG 
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 7/41 (17%), Positives = 16/41 (39%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
                  ++++    G       +  ++ +LD+  N LSG 
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 93  GRLNFSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLSGE 140
           G +      +LQYL L+ N  +G I   + G+   L  LDL  N+  G 
Sbjct: 261 GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 101 PNLQYLDLSNNNLSGSI-LSQIGSLSNLKYLDLDRNNLSGE 140
             L+ L LS+NN SG + +  +  +  LK LDL  N  SGE
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
                 L++L +S N +SG +   +    NL++LD+  NN S  
Sbjct: 174 SDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTG 215

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
             L+ L L  N+L+G I S + + +NL ++ L  N L+GE
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 3e-10
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 97  FSCFPNLQYLDLSNNNLSGSI---LSQIGSLSNLKYLDLDRNNLSGE 140
                +L+ LDLS N++SG+             LK+L +  N +SG+
Sbjct: 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD 193

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 3e-09
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
             S    L+ L++S+N   G I      L +L+YL L  N  +GE
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGE 284

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
             +L +LDL+ N  +G+I + +   S      +  N ++G+
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGK 573

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 5/36 (13%), Positives = 10/36 (27%)

Query: 105 YLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
           +   +     G    Q+  LS     ++      G 
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 72.2 bits (178), Expect = 3e-16
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 42/140 (30%)

Query: 40  SEIERQALLNSGWWKDRIPH--------NTSDHC--GWVGITCDYEG---RITDIGLAES 86
           +  ++QALL     K  + +         T+D C   W+G+ CD +    R+ ++ L+  
Sbjct: 4   NPQDKQALLQ---IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60

Query: 87  KIKGE------------LGRLNFSCF--------------PNLQYLDLSNNNLSGSILSQ 120
            +               L  L                     L YL +++ N+SG+I   
Sbjct: 61  NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120

Query: 121 IGSLSNLKYLDLDRNNLSGE 140
           +  +  L  LD   N LSG 
Sbjct: 121 LSQIKTLVTLDFSYNALSGT 140

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.4 bits (150), Expect = 3e-12
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
               LN      L ++DLS N L G      GS  N + + L +N+L+ +
Sbjct: 193 TFANLN------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 60.2 bits (147), Expect = 6e-12
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
            NL  LDL NN + G++   +  L  L  L++  NNL GE
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 57.5 bits (140), Expect = 5e-11
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 102 NLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
           N Q + L+ N+L+  +  ++G   NL  LDL  N + G 
Sbjct: 222 NTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGT 259

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 57.2 bits (139), Expect = 8e-11
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNL-KYLDLDRNNLSGE 140
            +  L     PNL  +    N +SG+I    GS S L   + + RN L+G+
Sbjct: 144 SISSL-----PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.1 bits (131), Expect = 9e-10
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
            S       + +S N L+G I     +L NL ++DL RN L G+
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGD 212

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNN-LSG 139
              L  L++S NNL G I  Q G+L          N  L G
Sbjct: 267 LKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCG 306

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 83  LAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           L  ++I  EL    +    N+  + LS N       +    + +L+ L L R  L  
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 17/43 (39%), Positives = 21/43 (48%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           F    NL  LDLS+N LS + L     L NL+ L L  N +  
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 16/49 (32%), Positives = 21/49 (42%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
            L   NF+ +  L  LD+  N +S         L  LK L+L  N LS 
Sbjct: 39  RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 87

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           F+   NL  L L +N++     +      NL  LDL  N LS 
Sbjct: 93  FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           F    NL  LDLSNNN++      +  L  L+ LDL  NNL+
Sbjct: 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSI-LSQIGSLSNLKYLDLDRNNLSG 139
           FS   +L+ LDL  N +   +   +   L N+  + L  N    
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           F     L+ +DL  NNL+    S   +  +LK L+L +N ++ 
Sbjct: 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 8e-09
 Identities = 12/43 (27%), Positives = 18/43 (41%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
               P L+ L+L +N LS          +NL  L L  N++  
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 9e-09
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSG--SILSQIGSLSNLKYLDLDRNNLSG 139
           F+  P+LQ L L    L    S  S    L NL  LDL  NN++ 
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           F     L++L++ +N++ G   +    L NLKYL L  +  S 
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           F+  P L+Y  L  NN+       +  L N++YL+L R+    
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             N+  L+L++N L     +     S L  LD+  N +S 
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 99  CFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
            + NL  LDLS NNL+         L  L+Y  L+ NN+  
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 95  LNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
                  +L  L+L +N      +     L  LK +DL  NNL+ 
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 95  LNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
           L+     +L+ L+LS+N +         ++  L  L L+   L   
Sbjct: 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS 210

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 99  CFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
               L  L+L+ N +S         L +L+ LDL  N +  E
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIG---SLSNLKYLDLDRNNLSG 139
           F     L  L L+N  L  S+  ++    + ++++ L L  + LS 
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIG-SLSNLKYLDLDRNNLSG 139
           F+   +L+ L+L  N ++       G +  NL  LD+  N    
Sbjct: 580 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 6e-07
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 8/51 (15%)

Query: 97  FSCFPNLQYLDLSNNNLS--------GSILSQIGSLSNLKYLDLDRNNLSG 139
                 L+ LDL +NNL+        G  +  +  LS+L  L+L+ N    
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILS--QIGSLSNLKYLDLDRNNLSG 139
                NLQ L LSNN +         I + S+LK L+L  N +  
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIG----SLSNLKYLDLDRNNLSG 139
           F+   NL+YL LSN+  S   L+       + S L  L+L +N +S 
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 99  CFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           C  + +  D S+  L+  +   +   +N+  L+L  N L  
Sbjct: 2   CTVSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRR 39

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 101 PNLQYLDLSNNNLSGSILSQIGSL--SNLKYLDLDRNNLSG 139
            +++ L LSN+ LS +  +    L  +NL  LDL  NNL+ 
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 9/52 (17%)

Query: 97  FSCFPNLQYLDLSNN---------NLSGSILSQIGSLSNLKYLDLDRNNLSG 139
                N++YL+L  +         +L          L  L++L+++ N++ G
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 14/57 (24%), Positives = 23/57 (40%)

Query: 83  LAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
              S +K       F    NL YLD+S+ +   +       LS+L+ L +  N+   
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.4 bits (134), Expect = 4e-10
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 83  LAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           +A +  +       F+   NL +LDLS   L     +   SLS+L+ L++  NN   
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.4 bits (134), Expect = 4e-10
 Identities = 18/49 (36%), Positives = 22/49 (44%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
            LG  +F  FP LQ LDLS   +         SLS+L  L L  N +  
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           F+   +LQ L++S+NN           L++L+ LD   N++  
Sbjct: 490 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           +    +L  L L+ N +    L     LS+L+ L     NL+ 
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           FS   +LQ L     NL+      IG L  LK L++  N +  
Sbjct: 96  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 6e-09
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSI-LSQIGSLSNLKYLDLDRNNLSG 139
           NF     L++LD  ++NL      S   SL NL YLD+   +   
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 7e-09
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             + + LDLS N L         S   L+ LDL R  +  
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLSGE 140
           F+   +L+ L ++ N+   + L  I   L NL +LDL +  L   
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSL-SNLKYLDLDRNNLSG 139
           + C  +LQ LD S N++  S   ++    S+L +L+L +N+ + 
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 8e-08
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQ-IGSLSNLKYLDLDRNNLSG 139
                 L+ L++++N +    L +   +L+NL++LDL  N +  
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
                +     +L+YLDLS N +   + S    L  L++LD   +NL  
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ 410

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 97  FSCFPNLQYLDLSNNNLS--GSILSQIGSLSNLKYLDLDRNNLSG 139
               P+L++LDLS N LS  G         ++LKYLDL  N +  
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKY----LDLDRNNLSG 139
           FS   NL++LDLS+N +     + +  L  +      LDL  N ++ 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           F+C  N+    L +  +    +         ++L+L       
Sbjct: 278 FNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQ 318

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 6/69 (8%)

Query: 77  RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLS------GSILSQIGSLSNLKYL 130
            +  + L E + +G L + + S    L  L +    L+        I+     L+N+   
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 131 DLDRNNLSG 139
            L    +  
Sbjct: 288 SLVSVTIER 296

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 102 NLQYLDLSNNNLSGSILSQ-IGSLSNLKYLDLDRNNLSGE 140
            L  L L NN  S +++   I  L+ L+   L       E
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           + G+       +L+ L  ++N   G        L +L++LDL RN LS
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLS 360

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 102 NLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
            +  L L     SG +   IG L+ L+ L L  +    
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV 119

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             N+  ++LSNN +S        + S L  ++L  N L+ 
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 83  LAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           L    ++  L ++       L  L+   N L G + +  GS   L  L+L  N ++ 
Sbjct: 317 LKTFPVETSLQKM-----KKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE 367

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 5e-09
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 96  NFSCFPNLQYLDLSNNNL-SGSILSQIGSLSNLKYLDLDRNNLSG 139
           +      +Q + +  NNL +  + + +  +  L  L+   N L G
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG 344

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 5/45 (11%), Positives = 19/45 (42%)

Query: 95  LNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           L +    +L  +++ N      + + + +L  ++ +++  N    
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 9/55 (16%), Positives = 14/55 (25%), Gaps = 1/55 (1%)

Query: 86  SKIKGELGRL-NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           SK   +         F      D   N         I    +L  L +  N++  
Sbjct: 526 SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 7/50 (14%)

Query: 97  FSCFPNLQYLDLSNNNLSG-------SILSQIGSLSNLKYLDLDRNNLSG 139
           FS    L  ++L  N L+               +   L  +DL  N L+ 
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 95  LNFSCFPNLQYLDLSNNNLSGSILS-QIGSLSNLKYLDLDRNNLSG 139
            NF     L  +DL  N L+      +  +L  L  +DL  N+ S 
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 7/46 (15%)

Query: 101 PNLQYLDLSNNNLSG-------SILSQIGSLSNLKYLDLDRNNLSG 139
             +  +D S N +          +        N+  ++L  N +S 
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 5/49 (10%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             G         L  L+L+ N ++    +  G    ++ L    N L  
Sbjct: 348 AFGSE-----IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 13/57 (22%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNL--------SGSILSQIGSLSNLKYLDLDRNNLSG 139
            L  L     P +Q ++++ N              L+       ++ + +  NNL  
Sbjct: 268 FLKAL-----PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 7/52 (13%)

Query: 95  LNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYL------DLDRNNLSGE 140
              +  P L  +DLS N+ S    +Q  + S LK        D   N    E
Sbjct: 507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 9/47 (19%), Positives = 17/47 (36%)

Query: 92  LGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           + ++N    PN+  LD+ +N      LS +          L  +   
Sbjct: 578 IRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
            +  P+L  L + +N++   +  +I    N+  LD+  N    
Sbjct: 562 ITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNIS 601

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 6/69 (8%), Positives = 18/69 (26%), Gaps = 24/69 (34%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQ-------------------IGSLSNLKYLD 131
            + RL       L+   + N+      + +                     +L +L  ++
Sbjct: 201 AVMRL-----TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 132 LDRNNLSGE 140
           +       +
Sbjct: 256 VYNCPNLTK 264

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 7/52 (13%), Positives = 16/52 (30%)

Query: 88  IKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
            K  +       F +L    ++++    SI            +    NN++ 
Sbjct: 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 12/113 (10%), Positives = 29/113 (25%), Gaps = 34/113 (30%)

Query: 61  TSDHCGWV---GITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNN------ 111
             +   W    G++ +  GR+T + L      G +          L+ L L ++      
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD-AIGQLTELEVLALGSHGEKVNE 121

Query: 112 ----------------------NLSGSILSQIG--SLSNLKYLDLDRNNLSGE 140
                                 +   + +        S+L    ++ +     
Sbjct: 122 RLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 1e-09
 Identities = 8/43 (18%), Positives = 17/43 (39%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           +S   +L  ++L N      +   +  L  L+ L++  N    
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 5e-09
 Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 23/111 (20%)

Query: 38  AASEIERQALLN-------SGW-WKDRIPHNTSDHCGW-VGITCDYEGRITDIGLAESKI 88
           A    + +AL           W +     +NT     W      D  G    + L     
Sbjct: 265 AEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDL----- 319

Query: 89  KGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
               GR+          L L+     G +   IG L+ LK L    ++ + 
Sbjct: 320 -DNNGRV--------TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV 361

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 7/44 (15%), Positives = 16/44 (36%)

Query: 95  LNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           ++     N   + LS N +         + S +  + L  N ++
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
                 L  LD  +N +    L   G+   L  L LD N +  
Sbjct: 569 LQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEE 609

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 7/50 (14%)

Query: 97  FSCFPNLQYLDLSNNNLS-------GSILSQIGSLSNLKYLDLDRNNLSG 139
           F+    +  + LSNN ++               +   L  +DL  N L+ 
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSG-SILSQIGSLSNLKYLDLDRNNLSG 139
            +    ++ L  S+N L     +    S+  +  +D   N +  
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 14/63 (22%)

Query: 86  SKIKGELGRLNFSCFPNLQYLDLSNNNLSG---------SILSQIGSLSNLKYLDLDRNN 136
           +++   L  L     P LQ L+++ N              +     +   ++   +  NN
Sbjct: 505 TQLPDFLYDL-----PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 137 LSG 139
           L  
Sbjct: 560 LEE 562

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 95  LNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRN 135
              +  P L  +D+S N  S S  +Q  + S LK   +   
Sbjct: 747 FRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQ 786

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQI--GSLSNLKYLDLDRNNLSG 139
           N+     L  +DL  N L+ S+       +L  L  +D+  N  S 
Sbjct: 723 NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS 767

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 86  SKIKGELGRL-NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           S    +         F      D   N +     + I +  +L  L +  N++  
Sbjct: 766 SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 6/63 (9%), Positives = 17/63 (26%), Gaps = 19/63 (30%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQ-------------------IGSLSNLKYLDLDRNNL 137
                 LQ +  +N+  +   ++                      +L +L  ++L     
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 138 SGE 140
             +
Sbjct: 504 MTQ 506

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 91  ELGRLNFSCFPNLQYLDLSN-NNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           E+  +      +L+   + N  N    I   I  L+ L+ +    +  + 
Sbjct: 413 EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY 462

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 8/50 (16%), Positives = 13/50 (26%), Gaps = 5/50 (10%)

Query: 95  LNFSCFPNLQYLDLSNNNLSG-----SILSQIGSLSNLKYLDLDRNNLSG 139
            N      +  +D S N +       S         N   + L  N +  
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK 687

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            +  P+L  L + +N++   +  ++     L  LD+  N   
Sbjct: 802 ITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNI 840

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 15/57 (26%), Positives = 28/57 (49%)

Query: 83  LAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           LA +++K +  +  F     L+ L+LS++ L  S       L  L++L+L  N+   
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           F CF  LQ LDL+  +LS  + S +  LS LK L L  N    
Sbjct: 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN 315

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
            S    L++L      +S      + +   L+ L L  N++S 
Sbjct: 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 6e-08
 Identities = 12/49 (24%), Positives = 16/49 (32%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           +   L      +LQ L+LS N               L+ LDL    L  
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 13/49 (26%), Positives = 17/49 (34%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
            +    FS   NL +LDL+   +         S   L  L L  N L  
Sbjct: 47  TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF 95

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 83  LAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILS--QIGSLSNLKYLDLDRNNLSG 139
           +  +  + ELG        NL+ LDLS++++  S     Q+ +LS+L+ L+L  N    
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           F     L  L L+ N L     + +     LK+L   +  +S 
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGS---LSNLKYLDLDRNNLSG 139
           F   P LQ+L+L  N+     + +  S   L  L+ L L   +LS 
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 11/43 (25%), Positives = 17/43 (39%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
                 L+ L L +N++S   L +      LK LD   N +  
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSI-LSQIGSLSNLKYLDLDRNNLSG 139
           F   P L+ LDL+   L      S   +L  LK L+L  + L  
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQ-IGSLSNLKYLDLDRNNLSG 139
            L +++ S FP+L +L +  N     + +  + +L NL+ LDL  +++  
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           +      L+ L LS  +LS        SL  + ++DL  N L+ 
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 9/44 (20%), Positives = 14/44 (31%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
                 L+ L LS N           +  +L +L +  N    E
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             + + L+ S N L     +    L NL +LDL R  +  
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           F+    + ++DLS+N L+ S +  +  L  + YL+L  N++S 
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 9/44 (20%), Positives = 18/44 (40%)

Query: 95  LNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
               C  +++ ++L  +       +     S L+ LDL   +LS
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 92  LGRLNFSCFPNLQ--YLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           L   +     +L+  YL+L++N++S  + S +  LS  + ++L +N L  
Sbjct: 512 LTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLK--YLDLDRNNLSG 139
                 L+ LD  NN +       + SL       L+L+ N+++G
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 7e-09
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           F     LQ L++S+NNL     S    L +L  LD   N +  
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 13/57 (22%), Positives = 19/57 (33%)

Query: 83  LAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
              S +K       F     L YLD+S  N           L++L  L +  N+   
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 12/43 (27%), Positives = 18/43 (41%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           FS   +L+ L      L+      IG L  LK L++  N +  
Sbjct: 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 16/57 (28%), Positives = 24/57 (42%)

Query: 83  LAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           +A +  K       F+   NL +LDLS   L         +L  L+ L++  NNL  
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
            L   +FS F  LQ+LDLS   +          L +L  L L  N +  
Sbjct: 46  ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 8/43 (18%), Positives = 16/43 (37%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           +    +L  L L+ N +          L++L+ L      L+ 
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSI-LSQIGSLSNLKYLDLDRNNLSG 139
           NF     LQ+LD  ++ L      S   SL  L YLD+   N   
Sbjct: 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLSG 139
           F    +L  L ++ N+   + LS +  + +NL +LDL +  L  
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 92  LGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           L +      P L+ L L+ N    SI  +  +L +L YLDL RN LS 
Sbjct: 319 LKQFPTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSF 364

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             + + +DLS N L         + S L++LDL R  +  
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQ-IGSLSNLKYLDLDRNNLSG 139
                 L+ L++++N +    L     +L+NL ++DL  N +  
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           ++   +L  LD S N +  S         +L + +L  N+++
Sbjct: 517 YNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 95  LNFSCFPNLQYLDLSNNNLS--GSILSQIGSLSNLKYLDLDRNNLS 138
                 P+L YLDLS N LS  G         ++L++LDL  N   
Sbjct: 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 95  LNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
            +     +L++LDLS N     + +    L  L++LD   + L  
Sbjct: 370 YSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKR 413

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
               + F C  N+  + L+  ++    L  +      + L + R  L  
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQ 321

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLK----YLDLDRNNLS 138
           FS   NL ++DLS N +    ++ +  L         LD+  N + 
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 3/51 (5%)

Query: 92  LGRLNFSCF--PNLQYLDLSNNNLSGSILS-QIGSLSNLKYLDLDRNNLSG 139
           +  +    F    L  L L  N  S +I+   + +L+ L    L       
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 6/44 (13%), Positives = 16/44 (36%)

Query: 95  LNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +   C   +    L+  N     + +   L+N+  + L   ++ 
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.4 bits (124), Expect = 9e-09
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             +    L  L L+NN L    +  IG L+NL  L L +N+++ 
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             +    +  L+L  N+   S LS + +++ L YL +  + +  
Sbjct: 127 PLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKD 169

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 6e-07
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             +   +L  L L+ N +    +S + SL++L Y     N ++ 
Sbjct: 172 PIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD 213

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 9e-07
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             +    L +L++  N +S   ++ +  L+ LK L++  N +S 
Sbjct: 238 PLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
                  L+ L++ +N +S   +S + +LS L  L L+ N L  E
Sbjct: 260 AVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNE 302

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
                 NL+ L L+ +N+S   +S + +L+ +  L+L  N+   
Sbjct: 105 ALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS 146

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             S    L  L +  N ++   +S + +L+NL+ L L+ +N+S 
Sbjct: 83  PLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD 124

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             S    L YL ++ + +    ++ I +L++L  L L+ N +  
Sbjct: 150 PLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED 191

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
                NL  L LS N+++   +  + SLS +   D     + 
Sbjct: 307 IGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 6/44 (13%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             +   +L Y     N ++   ++ + +++ L  L +  N ++ 
Sbjct: 194 PLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITD 235

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
                 ++  L ++   ++   +  I  L+NL+YL+L+ N ++ 
Sbjct: 39  TQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITD 80

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 7e-06
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             +    L  L + NN ++   LS + +LS L +L++  N +S 
Sbjct: 216 PVANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 3/43 (6%), Positives = 13/43 (30%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             +         L   +++   +     L ++  L +    ++
Sbjct: 17  PDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 3e-08
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
                N++ LDLS N LS    + +   + L+ L+L  N L  
Sbjct: 30  RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            + F  L+ L+LS+N L       + SLS L+ LDL+ N + 
Sbjct: 54  LAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 92  LGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           + R++ S     + + L+NN ++       G  S ++YLDL  N + 
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 5e-07
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            F     + ++ L NN L   I   +    NL++ DL  N   
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 8e-07
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSG-SILSQIGSLSNLKYLDLDRNNLS 138
            L  L+  C   +QYLDL  N +   +      S   L++L+L  N + 
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 9e-07
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 98  SCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             F  L+ LDLS+N L+  +  +  S + + ++ L  N L 
Sbjct: 188 VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
              +   +++++L  ++ S   S  N+K LDL  N LS
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS 47

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +      L+ LDL+NN +      ++    +++ L    NN+S
Sbjct: 75  DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            +    L++L+L  N +    +      + LK LDL  N L+
Sbjct: 165 AASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           P+++ L  +NNN+S  +          K + L  N ++
Sbjct: 99  PSIETLHAANNNIS-RV--SCSRGQGKKNIYLANNKIT 133

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.8 bits (117), Expect = 7e-08
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
                N++ LDLS N LS    + +   + L+ L+L  N L 
Sbjct: 30  RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 92  LGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           + R++ S     + + L+NN ++       G  S ++YLDL  N + 
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            + F  L+ L+LS+N L       + SLS L+ LDL+ N + 
Sbjct: 54  LAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            F     + ++ L NN L   I   +    NL++ DL  N   
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSG-SILSQIGSLSNLKYLDLDRNNLS 138
            L  L+  C   +QYLDL  N +   +      S   L++L+L  N + 
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 98  SCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             F  L+ LDLS+N L+  +  +  S + + ++ L  N L 
Sbjct: 188 VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +      L+ LDL+NN +      ++    +++ L    NN+S
Sbjct: 75  DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
              +   +++++L  ++ S   S  N+K LDL  N LS
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS 47

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            +    L++L+L  N +    +      + LK LDL  N L+
Sbjct: 165 AASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA 204

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           F+   +L+ L ++ N+   + L  I   L NL +LDL +  L 
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 16/56 (28%), Positives = 26/56 (46%)

Query: 83  LAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +A +  +       F+   NL +LDLS   L     +   SLS+L+ L++  N L 
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
                +     +L+YLDLS N +  ++ S    L  L++LD   +NL 
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 96  NFSCFPNLQYLDLSNNNLSG-SILSQIGSLSNLKYLDLDRNNLS 138
           NF     L++LD  ++NL   S  S   SL NL YLD+   +  
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 18/48 (37%), Positives = 22/48 (45%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            LG  +F  FP LQ LDLS   +         SLS+L  L L  N + 
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           F    NL YLD+S+ +   +       LS+L+ L +  N+  
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +    +L  L L+ N +    L     LS+L+ L     NL+
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           FS   +LQ L     NL+      IG L  LK L++  N + 
Sbjct: 96  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 8e-06
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           F+   +LQ L++++N L          L++L+ + L  N   
Sbjct: 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 9e-06
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLS--GSILSQIGSLSNLKYLDLDRNNLS 138
           +    P+L++LDLS N LS  G         ++LKYLDL  N + 
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 97  FSCFPNLQYLDLSNNNL-SGSILSQIGSLSNLKYLDLDRNNLS 138
                 L+ L++++N + S  +     +L+NL++LDL  N + 
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             + + LDLS N L         S   L+ LDL R  + 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           + G+       +L+ L  ++N    +  S++  L +L++LDL RN LS
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGG-NAFSEVD-LPSLEFLDLSRNGLS 360

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKY----LDLDRNNLS 138
           FS   NL++LDLS+N +     + +  L  +      LDL  N ++
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137
           N S   +L  LD+S++    SIL++I +L  +  +DL  N  
Sbjct: 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 8/43 (18%), Positives = 19/43 (44%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             S   NL+ L +   +++   +  +  L++L  LD+  +   
Sbjct: 83  PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
                 N++ L ++N + +    + I  LSNL+ L +   +++ +
Sbjct: 61  GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSD 103

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             +  P +  +DLS N     I   + +L  LK L++  + + 
Sbjct: 131 KINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 2/45 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
                P L+ L++  + +       I     L  L      + G+
Sbjct: 154 PLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 10/50 (20%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 89  KGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +     +  +   +L Y+ L+N N++   L+ I    N+K L ++  + +
Sbjct: 32  QSSTANITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHAT 79

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
                NL  LD+S N     +         +++L+L    + 
Sbjct: 383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQ---IGSLSNLKYLDLDRNNLS 138
                +L++LDLS N +    L      G+  +L+ L L +N+L 
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            +G  +     NLQ L L ++ ++        SL +L++LDL  N+LS
Sbjct: 40  YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 9e-06
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           F    +L++LDLS+N+LS    S  G LS+LKYL+L  N   
Sbjct: 70  FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            P LQ L +S N L    L        L  + + RN L 
Sbjct: 450 LPRLQELYISRNKLK--TLPDASLFPVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 98  SCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
                ++ LDLS N ++      + + +NL+ L L  + ++
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137
           FP L  + +S N L          L++L+ + L  N  
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 9/58 (15%), Positives = 27/58 (46%)

Query: 81  IGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           + +   +   E+ R++F+   +L  L++   +L       + S+ ++ +L L  +  +
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQ-IGSLSNLKYLDLDRNNLS 138
           F    NLQ L + N      I       L++L  L++   +L 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 92  LGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +  +       L+ LD+SNNNL     S    L  L+ L + RN L 
Sbjct: 422 IRVVKTCIPQTLEVLDVSNNNLD----SFSLFLPRLQELYISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSG-SILSQIGSLSNLKYLDLDRNNL 137
           F    +L+YL+L  N      + S   +L+NL+ L +     
Sbjct: 94  FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 5/47 (10%), Positives = 17/47 (36%)

Query: 92  LGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +  L       ++ L +    L   + +    L  +K + ++ + + 
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.4 bits (110), Expect = 4e-07
 Identities = 11/40 (27%), Positives = 12/40 (30%), Gaps = 2/40 (5%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
              L  LDLS N L          L  +  L L  N    
Sbjct: 273 PAKLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGS-LSNLKYLDLDRNNLS 138
            +    LQ LDLS+N+L  +  +      S L  L+L    L 
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 83  LAESKIKGELGRLNFSC---FPNLQYLDLSNNN---LSGSILSQIGSLSNLKYLDLDRNN 136
           L+++   GE G ++  C   FP LQ L L N      SG   +   +   L+ LDL  N+
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239

Query: 137 LSG 139
           L  
Sbjct: 240 LRD 242

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 13/50 (26%), Positives = 18/50 (36%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
            L  L     P L+ L ++  +       Q+     L  LDL  N   GE
Sbjct: 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 87  KIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
            ++   G  +      L  L+LS   L   +   +   + L  LDL  N L  
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.3 bits (94), Expect = 7e-05
 Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 4/46 (8%)

Query: 97  FSCFPNLQYLDLSNNNLSGSI----LSQIGSLSNLKYLDLDRNNLS 138
              FP L  LDLS+N   G               L+ L L    + 
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
                 NL  ++ SNN L+   ++ + +L+ L  + ++ N ++ 
Sbjct: 63  GVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD 104

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             +   NL  L L NN ++   +  + +L+NL  L+L  N +S 
Sbjct: 107 PLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD 148

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 8e-07
 Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
                  L  + ++NN ++   ++ + +L+NL  L L  N ++ 
Sbjct: 85  PLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD 126

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 8e-07
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 95  LNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
              +    L+ LD+S+N +S   +S +  L+NL+ L    N +S 
Sbjct: 171 KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD 213

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             +   NL  LDL+NN +S   L+ +  L+ L  L L  N +S 
Sbjct: 238 TLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             S    LQ L   NN +S   +S + +L+N+ +L    N +S 
Sbjct: 326 PVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD 367

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
                 NL  L L+ N L    +  + SL+NL  LDL  N +S 
Sbjct: 216 PLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 257

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 8/45 (17%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
           + +   N+ +L   +N +S   L+ + +L+ +  L L+    +  
Sbjct: 348 SLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNA 390

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             +    L  L+L+ N L    +S I +L NL YL L  NN+S 
Sbjct: 282 PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD 323

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             S   NL YL L  NN+S   +S + SL+ L+ L    N +S 
Sbjct: 304 PISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             S    L  L L  N +S   +S +  L+ L  L+L+ N L  
Sbjct: 260 PLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 301

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 7e-06
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             +   NL+ L  +NN +S   ++ +G L+NL  L L+ N L  
Sbjct: 194 VLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 8e-06
 Identities = 6/45 (13%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 95  LNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           ++ +    +  L      +    +  +  L+NL  ++   N L+ 
Sbjct: 40  VSQTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTD 82

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
                 NL  L+LS+N +S   +S +  L++L+ L    N ++ 
Sbjct: 129 PLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTD 169

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 6/43 (13%), Positives = 11/43 (25%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             +         L   N++         L  +  L  DR  + 
Sbjct: 19  TDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK 59

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
             S   +LQ L   N       L  + +L+ L+ LD+  N +S 
Sbjct: 151 ALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD 191

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 6e-07
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           F    +LQ L L++N L+         L+ L+ L L+ N L+
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 9e-07
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           EL   NF   P + Y+DL  N+++         L  L+ LDL  N L+
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQ--IGSLSNLKYLDLDRNNLS 138
           F    +L  L L    LS ++L      +L  L  LDL +N + 
Sbjct: 93  FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 83  LAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQI-----GSLSNLKYLDLDRNNL 137
           L +++     G    S  P+L+ L L  N L  +  +++       LS+L+ L L+ N L
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

Query: 138 S 138
           +
Sbjct: 493 N 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 14/56 (25%), Positives = 21/56 (37%)

Query: 83  LAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           L        + +  F   PNL+ LDL ++ +          L +L  L L    LS
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS 110

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
            +   +F     LQ L+L +     +I  +   +L NL+ LDL  + + 
Sbjct: 38  TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           F    NLQ L+LS N L     S    L  + Y+DL +N+++
Sbjct: 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 9/44 (20%), Positives = 13/44 (29%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
                  + L LS N +     S    L  L+ L+L        
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 83  LAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           L+E++++           P+LQ L L+ N  S     Q      +L+ L L  N L 
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 10/40 (25%), Positives = 21/40 (52%)

Query: 99  CFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
              ++++LDLS+  +         +L +LK L+L  N ++
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.2 bits (94), Expect = 8e-05
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 5/42 (11%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           F     LQ LDL +N L+      I  + ++  + L  N L 
Sbjct: 358 FKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV 394

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.9 bits (108), Expect = 8e-07
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
                PN+  L L+ N L+   +  + +L NL +L LD N + 
Sbjct: 60  GIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIK 100

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
                P L+ L L NN +  + ++ +  L+ L  L L+ N +S
Sbjct: 126 GLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS 166

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 7e-06
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             +   NL +L L  N +    LS +  L  LK L L+ N +S
Sbjct: 82  PLTNLKNLGWLFLDENKIK--DLSSLKDLKKLKSLSLEHNGIS 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 8e-06
 Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             +   ++  +  +N+++    +  I  L N+  L L+ N L+
Sbjct: 38  TQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKLT 78

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +      L+ L L +N +  S ++ +  L  L+ L L  N ++
Sbjct: 104 SLKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT 144

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.2 bits (96), Expect = 3e-05
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             +    LQ L LS N++  S L  +  L NL  L+L      
Sbjct: 170 PLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 40.9 bits (95), Expect = 4e-05
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             S    L  L L +N +S   +  +  L+ L+ L L +N++S
Sbjct: 148 VLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 3/43 (6%), Positives = 15/43 (34%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
               F      +L   +++         L+++  +  + +++ 
Sbjct: 16  PDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK 56

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
                +L+ +   NN L    L ++ +L  L  +  D N L 
Sbjct: 211 PDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK 250

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 98  SCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
              P+L+++   NN L    L ++ +L  L  +  D N+L 
Sbjct: 170 DLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK 208

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           P L+YL +SNN L    L ++ + S LK +D+D N+L 
Sbjct: 131 PLLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLK 166

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 98  SCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
              P+L+ L  S N+L+  +     SL +L   + +   LS 
Sbjct: 88  ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD 128

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 98  SCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
              PNL YL+ S+N +     S      +L+ L++  N L 
Sbjct: 294 ELPPNLYYLNASSNEIR----SLCDLPPSLEELNVSNNKLI 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 98  SCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +  P L+ L  S N+L+  +        NLK L ++ N L 
Sbjct: 334 ALPPRLERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLR 370

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            S      +LD SNN L+ ++    G L+ L+ L L  N L 
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 92  LGRLNFSCFP-NLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           L    F C P  ++ LDL +N +  SI  Q+  L  L+ L++  N L 
Sbjct: 411 LTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 7e-06
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           EL   +      L+ L +S+N +    +S       L+YLDL  N L 
Sbjct: 35  ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 92  LGRLNFSCFPNLQYLDLSNNNL-SGSILSQIGSLSNLKYLDLDRNNLS 138
           L +++     NL++LDLS N   +  I  + G++S LK+L L   +L 
Sbjct: 81  LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 12/56 (21%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 83  LAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           ++++ +  +  + + S   +L  L++S+N L+ +I   +     +K LDL  N + 
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           F     L+YLDLS+N L    +S      NLK+LDL  N   
Sbjct: 65  FKFNQELEYLDLSHNKLVK--IS-CHPTVNLKHLDLSFNAFD 103

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.2 bits (94), Expect = 7e-05
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
                L++S N +S    S I SLS L+ L +  N + 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ 58

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
            +   +LQ LD+S N++S            +L  L++  N L+
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIG---SLSNLKYLDLDRNNLS 138
           N      L+ L L  N L   +         + +L+ LD+ +N++S
Sbjct: 343 NCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVS 387

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 7/42 (16%), Positives = 16/42 (38%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +  F N+   + + +      +     +S   +LD   N L+
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 83  LAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
                +K     L  +  P    L+L +  L      Q   LS+L+++ +D   L 
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM 117

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +  RL+     +LQ++ +    L   +   +   + L+ L L RN L 
Sbjct: 99  QAFRLS-----HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNN 136
              F  L+ L L+ N L  ++ + I SL+ L+ L +    
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP 161

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 6/49 (12%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDL-DRNNLS 138
            +  L       L+ LDL       +     G  + LK L L D +NL 
Sbjct: 224 AIHHLP-----KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 102 NLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           NLQ L L    +  S+ + I +L NLK L +  + LS
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 5/48 (10%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           ++ RL       L+ LDL        + S I  L     + +  +  +
Sbjct: 272 DIHRL-----TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 5/46 (10%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNN 136
             G         L+ L L + +   ++   I  L+ L+ LDL    
Sbjct: 248 IFGGR-----APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 7/123 (5%)

Query: 17  WAALTLLIVHVASATNISIHVAASEIERQALLNSGWWKDRIPHNTSDHCGWVGITCDYEG 76
           W  LT++++  A    +              ++       +    S       +      
Sbjct: 383 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP-MRAAYLDDLRSKFLLENSVLKMEYA 441

Query: 77  RITDIGLAESKIKGELGRL-NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRN 135
            +  + LA   +      L +      + +LDLS+N L  ++   + +L  L+ L    N
Sbjct: 442 DVRVLHLAHKDLT----VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN 496

Query: 136 NLS 138
            L 
Sbjct: 497 ALE 499

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.4 bits (104), Expect = 3e-06
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 96  NFSCFPNLQYLDLSNNNLSG-SILSQIGSLSNLKYLDLDRNNLS 138
             +  P LQ L L NN L   + +  + S   L  L+L  N+L 
Sbjct: 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             +    L+ L  S+N L    +  + +L  L+ L L  N L 
Sbjct: 481 ALAALRCLEVLQASDNALE--NVDGVANLPRLQELLLCNNRLQ 521

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 14/70 (20%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 77  RITDIGLAESKIKGELGR--LNFSCFPNLQYLDLSNNNLSGS----ILSQIGSLSNLKYL 130
            +  +G+ +++ +  +    L     P L+ +D+S   L+      +L  +  + +LK++
Sbjct: 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312

Query: 131 DLDRNNLSGE 140
           ++  N LS E
Sbjct: 313 NMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 39.9 bits (92), Expect = 8e-05
 Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 83  LAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGS---LSNLKYLDLDRNNLSG 139
             +  +       +   FPNL++L + +      ++        L  L+ +D+    L+ 
Sbjct: 234 GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293

Query: 140 E 140
           E
Sbjct: 294 E 294

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
                +     +L+YLDLS N +  ++ S    L  L++LD   +NL 
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 114

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIG---SLSNLKYLDLDRNNLS 138
           NF     L++LD  ++NL    +S+     SL NL YLD+   +  
Sbjct: 96  NFLGLEQLEHLDFQHSNL--KQMSEFSVFLSLRNLIYLDISHTHTR 139

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILS--QIGSLSNLKYLDLDRNNLS 138
           F     L  L LS+N LS            ++LKYLDL  N + 
Sbjct: 48  FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           F+   +L+ L ++ N+   + L  I   L NL +LDL +  L 
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 11/39 (28%), Positives = 15/39 (38%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             +   L+L +N L          L+ L  L L  N LS
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNL 137
           F    NL YLD+S+ +      + I   LS+L+ L +  N+ 
Sbjct: 122 FLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSF 162

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           F+   NL +LDLS   L   +      SLS+L+ L++  NN  
Sbjct: 171 FTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI--GSLSNLKYLDLDRNNLS 138
           + C  +LQ LD S N++  +   Q      S+L +L+L +N+ +
Sbjct: 219 YKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
            +    F    +L+ L L  N++   I       L++L  L+L  N L+
Sbjct: 89  MIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT 136

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           F    NL+YL+L   N+    +  +  L  L+ L++  N+  
Sbjct: 192 FEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFP 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           F+   +L  L+L +N L+  I S     LS L+ L L  N + 
Sbjct: 119 FNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE 160

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNN 136
           F     L+ L L NN +  SI S     + +L  LDL    
Sbjct: 143 FEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELK 182

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           F+  P+L  LDL        I       L NLKYL+L   N+ 
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             N +YL+L  NN+          L +L+ L L RN++ 
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 13/41 (31%), Positives = 17/41 (41%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137
           F    +L  L+L++NNLS         L  L  L L  N  
Sbjct: 262 FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           F    +L+ L + N+ +S    +    L++L  L+L  NNLS
Sbjct: 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 92  LGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +  +       L  L L +NNL+    + + +   L  +DL  N L 
Sbjct: 223 INVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 267

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
               P L+ LDLS+N+L   +         L+ L LD N++ 
Sbjct: 297 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 6e-06
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           F     L+ L +SNN L  ++      +  LK LDL  N+L 
Sbjct: 274 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 8e-06
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 92  LGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           L  ++ S  P+L + ++S N      LS +     ++ LD   N+++
Sbjct: 183 LTHVDLSLIPSLFHANVSYNL-----LSTLAIPIAVEELDASHNSIN 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
              +P L  +DLS N L   +      +  L+ L +  N L 
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           N   F  L+ L L +N++  ++  ++ +   LK L L  N+  
Sbjct: 319 NQPQFDRLENLYLDHNSIV-TL--KLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 5e-05
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           F   P L  L L  N+LS S+   I  +   L  L +  NNL 
Sbjct: 119 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE 160

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.7 bits (95), Expect = 6e-05
 Identities = 5/42 (11%), Positives = 15/42 (35%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
              F  ++ L+L++  +             ++ L +  N + 
Sbjct: 71  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.9 bits (93), Expect = 9e-05
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           F    +LQ L LS+N L+  +   +  + +L + ++  N LS
Sbjct: 167 FQATTSLQNLQLSSNRLT-HV--DLSLIPSLFHANVSYNLLS 205

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 9/42 (21%), Positives = 17/42 (40%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           F     L+ L++S+     ++        NL  L +   NL+
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 8e-06
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 77  RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRN 135
               + L +++IK  L +  F+ FP+L+ L+L+ N +S ++      +L NL+ L L  N
Sbjct: 33  ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSN 90

Query: 136 NLS 138
            L 
Sbjct: 91  RLK 93

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           F+   NL  LD+S N +   +L  +   L NLK L++  N+L 
Sbjct: 100 FTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV 141

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
               + LDL  N +      +  S  +L+ L+L+ N +S
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
                 L++L+LS N +S +I   +   L  L+ + L    L+
Sbjct: 244 VRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           FS   +L+ L L   NL+ SI ++    L  L  L L   N++
Sbjct: 148 FSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN 189

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 77  RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNN 136
           R+ +I L   ++   +    F     L+ L++S N L+    S   S+ NL+ L LD N 
Sbjct: 273 RLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331

Query: 137 LS 138
           L+
Sbjct: 332 LA 333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 97  FSCFP-NLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137
           F C P  ++ LDL NN +  SI   +  L  L+ L++  N L
Sbjct: 445 FRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 10/42 (23%), Positives = 18/42 (42%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
                +  +L+ + N  + S+     +L  L+ L L RN L 
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.0 bits (96), Expect = 5e-05
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           EL   + S    L+ L LS+N +            +L+YLD+  N L 
Sbjct: 66  ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 92  LGRLNFSCFPNLQYLDLSNNNL-SGSILSQIGSLSNLKYLDLDRNNLS 138
           L  ++     +L++LDLS N+     +  + G+L+ L +L L      
Sbjct: 112 LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 8/42 (19%), Positives = 18/42 (42%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +S F  +    LS ++     +    S S+  +L+  +N  +
Sbjct: 325 YSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 37.5 bits (87), Expect = 6e-04
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            ++  L+LS+N L+GS+   +     +K LDL  N + 
Sbjct: 428 ESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM 463

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 37.5 bits (87), Expect = 7e-04
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           P  + L LS N++S   +  I  LS L+ L L  N + 
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR 89

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 77  RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRN 135
               + L E++I+  +   +F    +L+ L LS N++  +I       L+NL  L+L  N
Sbjct: 65  NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122

Query: 136 NLS 138
            L+
Sbjct: 123 RLT 125

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.6 bits (103), Expect = 4e-06
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           F    NL+YL+L+  NL    +  +  L  L  LDL  N+LS
Sbjct: 181 FEGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           F+   NL  L+L +N L+ +I +     LS LK L L  N + 
Sbjct: 108 FNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE 149

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             N + L+L  N +    ++    L +L+ L L RN++ 
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           F+  P+L+ LDL        I       LSNL+YL+L   NL 
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.1 bits (94), Expect = 8e-05
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137
           F    +L  ++L++NNL+         L +L+ + L  N  
Sbjct: 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           F    +LQ L +  + +     +   +L +L  ++L  NNL+
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           N +    L  LDLS N+LS +I       L +L+ L + ++ + 
Sbjct: 202 NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ 244

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 95  LNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           L+ +    L +LD S+N L+  I   +  L+ L Y D   N L+
Sbjct: 206 LDLNQNIQLTFLDCSSNKLT-EI--DVTPLTQLTYFDCSVNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 92  LGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
              ++      L  LD  N++++   ++ I  L+ L  L    NN++
Sbjct: 33  TDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT 77

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 9e-06
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 95  LNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           L+ S  P L YL L+N  L+  +   +   + LK L     ++ 
Sbjct: 312 LDLSQNPKLVYLYLNNTELT-EL--DVSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 2/44 (4%)

Query: 95  LNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           L+ S    L+ L   N ++     S +G +  L           
Sbjct: 333 LDVSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            +  L+ S   NL YL   +N L+ ++   +  L+ L YL+ D N L+
Sbjct: 75  NITTLDLSQNTNLTYLACDSNKLT-NL--DVTPLTKLTYLNCDTNKLT 119

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
                  L  L  ++NN++ ++   +   +NL YL  D N L+
Sbjct: 59  GIEKLTGLTKLICTSNNIT-TL--DLSQNTNLTYLACDSNKLT 98

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 95  LNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           L+ S    L  L+   NN++  +   +     L +LD   N L+
Sbjct: 185 LDVSQNKLLNRLNCDTNNIT-KL--DLNQNIQLTFLDCSSNKLT 225

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           ++  L+ +    L  LD     ++  +   +     L YL L+   L+
Sbjct: 287 KIKELDVTHNTQLYLLDCQAAGIT-EL--DLSQNPKLVYLYLNNTELT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            L  ++ S    L  LD   N     +   +   + L  LD   N ++
Sbjct: 138 TLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 95  LNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           L+ +    L  LD S N ++   +SQ      L  L+ D NN++
Sbjct: 164 LDVTPQTQLTTLDCSFNKITELDVSQ---NKLLNRLNCDTNNIT 204

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +L  L+ +    L YL+   N L+   +SQ      L YL+  RN L+
Sbjct: 96  KLTNLDVTPLTKLTYLNCDTNKLTKLDVSQ---NPLLTYLNCARNTLT 140

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 95  LNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           ++ +    L Y D S N L+   +S    LS L  L   + +L 
Sbjct: 227 IDVTPLTQLTYFDCSVNPLTELDVST---LSKLTTLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 2/48 (4%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +L  ++ +    L Y           +   +   + L  LD     ++
Sbjct: 265 DLLEIDLTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT 310

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             L  L +  N L+  +   +  LS+   ++L+ N LS
Sbjct: 261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 98  SCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +  P L+ L++S N L+ S+      L  L        +L 
Sbjct: 78  ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP 117

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 37.6 bits (87), Expect = 6e-04
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             ++  L + +NNL+ S+ +       L+ L++  N L+
Sbjct: 60  PAHITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLT 94

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 37.2 bits (86), Expect = 9e-04
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 18/56 (32%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSL-----------------SNLKYLDLDRNNLS 138
            P LQ L +S+N L+ S+ +    L                 S L+ L +  N L+
Sbjct: 140 PPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA 194

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
               P L+ LDLS+N+L   +         L+ L LD N++ 
Sbjct: 291 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 92  LGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +  +       L  L L +NNL+    + + +   L  +DL  N L 
Sbjct: 217 INVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 261

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           F     L+ L +SNN L  ++      +  LK LDL  N+L 
Sbjct: 268 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            L  ++ S  P+L + ++S N      LS +     ++ LD   N+++
Sbjct: 176 RLTHVDLSLIPSLFHANVSYNL-----LSTLAIPIAVEELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           N   F  L+ L L +N++  ++  ++ +   LK L L  N+  
Sbjct: 313 NQPQFDRLENLYLDHNSIV-TL--KLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
              +P L  +DLS N L   +      +  L+ L +  N L 
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 5/42 (11%), Positives = 15/42 (35%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
              F  ++ L+L++  +             ++ L +  N + 
Sbjct: 65  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           F    +LQ L LS+N L+  +   +  + +L + ++  N LS
Sbjct: 161 FQATTSLQNLQLSSNRLT-HV--DLSLIPSLFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           F   P L  L L  N+LS S+   I  +   L  L +  NNL 
Sbjct: 113 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE 154

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 8e-06
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           N      L+ L+LS+N +SG +        NL +L+L  N + 
Sbjct: 59  NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 78  ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137
           + ++ L  S+            F  L++L   N  L  + ++ +  L+ LK L+L  N +
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSIANLPKLNKLKKLELSDNRV 76

Query: 138 SG 139
           SG
Sbjct: 77  SG 78

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 77  RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSG-SILSQIGSLSNLKYLDLDRN 135
           ++  + L+++++ G L  L   C PNL +L+LS N +   S +  +  L NLK LDL   
Sbjct: 65  KLKKLELSDNRVSGGLEVLAEKC-PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 8e-06
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
                 NL  L+L +N ++   L+ + +L+ +  L+L  N L 
Sbjct: 58  GVQYLNNLIGLELKDNQITD--LAPLKNLTKITELELSGNPLK 98

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             +   NLQYL + N  +S   L+ + +LS L  L  D N +S
Sbjct: 146 PLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
                  +  L+LS N L    +S I  L ++K LDL    ++
Sbjct: 80  PLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQIT 120

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             +   +++ LDL++  ++   ++ +  LSNL+ L LD N ++
Sbjct: 102 AIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQIT 142

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             +   NLQ L L  N ++   +S +  L+NL+YL +    +S
Sbjct: 124 PLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             +  PNL  + L NN +S   +S + + SNL  + L    ++
Sbjct: 190 PLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             +    L  L   +N +S   +S + SL NL  + L  N +S
Sbjct: 168 PLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.1 bits (94), Expect = 8e-05
 Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             +    +  L      ++   +  +  L+NL  L+L  N ++
Sbjct: 36  TQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQIT 76

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
                PN+  L L+ N L+   +  + +L NL +L LD N + 
Sbjct: 63  GIQYLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVK 103

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
                P L+ L L NN ++   ++ +  L+ L  L L+ N +S
Sbjct: 129 GLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +      L+ L L +N +  S ++ +  L  L+ L L  N ++
Sbjct: 107 SLKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT 147

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             S    L  L L +N +S   +  +  L+ L+ L L +N++S
Sbjct: 151 VLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             +   ++  +  +N+++    +  I  L N+  L L+ N L+
Sbjct: 41  TQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKLT 81

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             +    LQ L LS N++S   L  +  L NL  L+L      
Sbjct: 173 PLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             +   NL +L L  N +    LS +  L  LK L L+ N +S
Sbjct: 85  PLANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNGIS 125

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 3/43 (6%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +   F      +L   +++         L+++  +  + +++ 
Sbjct: 19  SDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK 59

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 78  ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNN 136
           +  + L+ + I  EL   +FS   +LQ+L +        I +     LS+L  L LD N 
Sbjct: 32  VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 137 LS 138
             
Sbjct: 91  FL 92

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQ--IGSLSNLKYLDLDRNNLS 138
           F+   NL+ L L+  NL G++LS      L++L+ L L  NN+ 
Sbjct: 99  FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           FS F +L+ L L+ N ++  I       L++L  L+L +N L 
Sbjct: 295 FSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG 336

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           F     L+ LDLS N++  ++  Q    L NLK L LD N L 
Sbjct: 343 FENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI--GSLSNLKYLDLDRNNLS 138
           F    +L+ L L +NN+   I       ++     LDL  N + 
Sbjct: 125 FKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVK 167

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
               F NL+ L LS+N +S   LS +  L+ L+ L ++RN L 
Sbjct: 58  GMQFFTNLKELHLSHNQISD--LSPLKDLTKLEELSVNRNRLK 98

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +      +Q  +  N+N+    L+ +   +NLK L L  N +S
Sbjct: 36  SQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSHNQIS 76

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +     NL+ L + NN L    +  +G LS L+ LDL  N ++
Sbjct: 123 SLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
                  L+ LDL  N ++      +  L  + ++DL      
Sbjct: 145 MLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
                 N    +L   +++   L     LS ++  + D +N+ 
Sbjct: 14  PDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ 54

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
              L  L L NN L       +  L NL+ L +  N L 
Sbjct: 105 SACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK 141

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            S  P L+ L L NN LS  + + +  L  L+ + L  NN++
Sbjct: 237 LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
              +  L  L L +N +   I +     L  L+ L LD N LS
Sbjct: 213 LLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS 254

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           F    +L  L L NN +S  I  +    L  L+ L + +N+L 
Sbjct: 74  FKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV 115

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           FS    LQ L +S N+L   I       S+L  L +  N + 
Sbjct: 98  FSPLRKLQKLYISKNHLV-EI--PPNLPSSLVELRIHDNRIR 136

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLK--YLDLDRNNLS 138
           ++ +  FS   N+  +++  N L  S     G+   LK  YL +    L+
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEP-GAFDGLKLNYLRISEAKLT 185

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 100 FPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
             +L  L + +N +   +   +   L N+  +++  N L 
Sbjct: 122 PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLE 160

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 99  CFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             P+   LDL NN++S         L +L  L L  N +S
Sbjct: 52  ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 6/49 (12%)

Query: 96  NFSCFPNLQYLDLSNNNLSG------SILSQIGSLSNLKYLDLDRNNLS 138
                  LQ + L  NN++         +      +    + L  N + 
Sbjct: 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 11/47 (23%), Positives = 16/47 (34%)

Query: 92  LGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           L  +       L  L L +N +    L  +   S L  L L  N + 
Sbjct: 184 LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            F     L+ L ++NN +         +L +L  L L  N+L 
Sbjct: 59  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 77  RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSG-SILSQIGSLSNLKYLDLDRN 135
           R+  + +  ++I   +G       P+L  L L+NN+L     L  + SL +L YL + RN
Sbjct: 65  RLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 98  SCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +       +D S+N +    L     L  LK L ++ N + 
Sbjct: 39  ATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNNRIC 77

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           N    P L+ L+LS N + G +      L NL +L+L  N L 
Sbjct: 66  NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.3 bits (92), Expect = 8e-05
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 78  ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137
           + ++ L   K          + F NL++L L N  L    +S +  L  LK L+L  N +
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLELSENRI 83

Query: 138 SG 139
            G
Sbjct: 84  FG 85

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           F     L Y+ +++ N++ +I    G   +L  L LD N ++
Sbjct: 167 FQGMKKLSYIRIADTNIT-TI--PQGLPPSLTELHLDGNKIT 205

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQ--IGSLSNLKYLDLDRNNLS 138
           F+    +  ++L  N L  S +       +  L Y+ +   N++
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
                NL  L LS N++S      + +  +L+ L L+ N L 
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 100 FPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
              LQ L +  N ++  +   +   L+ +  ++L  N L 
Sbjct: 120 PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK 158

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGS-LSNLKYLDLDRNNLS 138
           F    NL  L L NN +S  I     + L  L+ L L +N L 
Sbjct: 72  FKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK 113

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 92  LGRLNFSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           +  +     P+L  L L  N ++  + +     L+NL  L L  N++S
Sbjct: 183 ITTIPQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS 229

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           F+    L+ L LS N L   +         L+ L +  N ++
Sbjct: 96  FAPLVKLERLYLSKNQLK-EL--PEKMPKTLQELRVHENEIT 134

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            P+   LDL NN ++        +L NL  L L  N +S
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 6/49 (12%)

Query: 96  NFSCFPNLQYLDLSNNNLSG------SILSQIGSLSNLKYLDLDRNNLS 138
             +    +Q + L NNN+S                ++   + L  N + 
Sbjct: 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           FS   +L++LDLS N LS ++ S     LS+L +L+L  N   
Sbjct: 96  FSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK 137

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
                NLQ L L++N ++ +I      SL +L++LDL  N LS
Sbjct: 72  LQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS 113

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
              ++ LDLSNN ++    S +    NL+ L L  N ++
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN 89

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           F+    L+ LDLS+N    S+       L  L  L LDR  L 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
               Q + L  N +S    +   +  NL  L L  N L+
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA 69

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           F     LQYL L +N L  ++       L NL +L L  N +S
Sbjct: 125 FRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           F     L  L L    L   +   +   L+ L+YL L  N L 
Sbjct: 101 FHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ 142

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNN 136
           F    NL  L L +N L+  I +     L+ L+ LDL  N 
Sbjct: 52  FRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           F    NL +L L  N +S S+  +    L +L  L L +N ++
Sbjct: 149 FRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA 190

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           FS   +LQ L     NL+ S+ +   G L  LK L++  N + 
Sbjct: 96  FSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ 137

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           F  FP LQ LDLS   +  +I      SLS+L  L L  N + 
Sbjct: 48  FFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ 89

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
               P L  LDLS+N L  S+     +L  L  LD+  N L+
Sbjct: 73  DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
               P L  LD+S N L+ S+       L  L+ L L  N L 
Sbjct: 96  GQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 37.4 bits (87), Expect = 5e-04
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
              +  L  L+L    L  + L   G+L  L  LDL  N L 
Sbjct: 51  LMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ 90

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 37.0 bits (86), Expect = 7e-04
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
            +  P L+ L L+NNNL+  + + +   L NL  L L  N+L 
Sbjct: 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.2 bits (94), Expect = 7e-05
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
            +   NL  L LS+N+L+  I S+    + NL+YLDL  N+L 
Sbjct: 60  PTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 39.8 bits (93), Expect = 8e-05
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           F   PNL+YLDLS+N+L  ++   +   L  L+ L L  N++ 
Sbjct: 84  FVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 97  FSCFPNLQYLDLSNNNLS---GSILSQIGSLSNLKYLDLDRNNLS 138
           F     LQ L LS N +S     ++     L  L  LDL  N L 
Sbjct: 132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 4/39 (10%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
            P +  L+++ N L  S+        +L+YLD   N LS
Sbjct: 79  PPQITVLEITQNALI-SLPELPA---SLEYLDACDNRLS 113

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 3/47 (6%)

Query: 92  LGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
           +  L          L L+  NLS S+   +     +  L++ +N L 
Sbjct: 50  VSLLKECLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI 93

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 96  NFSCFPNLQYLDLSNNNLSG-SILSQIGSLSNLKYLDLDRN 135
                 NL+ L +SNN ++    + ++ +L  L+ L L  N
Sbjct: 110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS 138
             S     ++L LS NN+    +S +  + NL+ L L RN + 
Sbjct: 43  TLSTLKACKHLALSTNNI--EKISSLSGMENLRILSLGRNLIK 83

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           FS +  L+ +DLSNN +S  +       L +L  L L  N ++
Sbjct: 52  FSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           F    +L  L L  N ++  +   +   L +L+ L L+ N ++
Sbjct: 76  FQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSI-LSQIGSLSNLKYLDLDRNNLS 138
           +     NL  L + N      + L  +  L  L+ L + ++ L 
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLS 138
           F     + ++++ N      I       L  LK+L +    L 
Sbjct: 76  FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 47  LLNSGWWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYL 106
           LL+ G    R P +  D       +     R+  + L+ S I+        S    LQ L
Sbjct: 67  LLSQGVIAFRCPRSFMDQPLAEHFSP---FRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123

Query: 107 DLSNNNLSGSILSQIGSLSNLKYLDL 132
            L    LS  I++ +   SNL  L+L
Sbjct: 124 SLEGLRLSDPIVNTLAKNSNLVRLNL 149

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 77  RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRN 135
            +  I ++++ +   +    FS  P L  + +   N    I  +   +L NL+YL +   
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 136 NLS 138
            + 
Sbjct: 115 GIK 117

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 37.5 bits (87), Expect = 6e-04
 Identities = 11/60 (18%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 78  ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNN 136
             ++    +K++  + +  FS F +L+ +++S N++   I + +  +L  L  + +++ N
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.73
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.72
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.7
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.63
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.35
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.15
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.02
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.0
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.93
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.92
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.91
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.89
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.83
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.83
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.75
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.75
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.75
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.74
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.74
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.72
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.7
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.7
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.7
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.66
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.65
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.65
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.65
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.65
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.64
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.61
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.61
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.56
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.55
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.55
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.53
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.52
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.52
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.5
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.5
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.49
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.49
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.49
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.48
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.48
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.48
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.47
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.45
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.44
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.42
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.42
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.42
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.4
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.4
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.39
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.39
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.36
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.36
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.36
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.36
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.35
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.35
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.34
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.34
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.32
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.32
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.31
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.3
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.28
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.28
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.25
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.25
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.19
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.18
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.03
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.03
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.01
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.99
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.98
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.98
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.98
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.96
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.93
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.93
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.91
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.88
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.86
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.79
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.78
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.77
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.75
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.71
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.67
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.47
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.24
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.2
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.16
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.0
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.95
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.48
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.36
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.15
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	95.98
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.88
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	95.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	95.67
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.84
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	94.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	92.91
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.18
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	90.16
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	88.0
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	85.42
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	85.33
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	85.25
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	84.96
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	83.4

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.73  E-value=2e-18  Score=145.29  Aligned_cols=108  Identities=25%  Similarity=0.418  Sum_probs=91.5

Q ss_pred             hccccchhhhhhHHHHHHHhcCCCCCCCCCCCCCCCCCccccccCCCCCeeEEecCCCCCccc---cCC-----------
Q 043483           29 SATNISIHVAASEIERQALLNSGWWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGE---LGR-----------   94 (140)
Q Consensus        29 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~w~~~~~~C~w~gv~C~~~~~v~~L~L~~~~l~g~---l~~-----------   94 (140)
                      +++..+.|..++.++|+.+.++.  ..++|..+.+||.|.||+|+ .++|+.|+|+++++.|.   +++           
T Consensus         6 ~~~~~~~~~~all~~k~~~~~~~--~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l   82 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLPDKN--LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL   82 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCSCTT--SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred             cccCCHHHHHHHHHHHhhCCCcc--cccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence            33446668889999999887544  67899878899999999998 79999999999999886   321           


Q ss_pred             -----------ccCCCCCCCcEEEccCCccccccch--hhcCCCCCCEEeCcCCcCcC
Q 043483           95 -----------LNFSCFPNLQYLDLSNNNLSGSILS--QIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        95 -----------~~l~~l~~L~~L~l~~n~l~G~iP~--~~~~l~~L~~L~ls~N~lsG  139 (140)
                                 ..++.+++|++|+|++|.+.|.+|.  .++++++|++|++++|.++|
T Consensus        83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~  140 (768)
T 3rgz_A           83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF  140 (768)
T ss_dssp             ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEEC
T ss_pred             CCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCC
Confidence                       1588899999999999999999998  89999999999999998875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.72  E-value=7.9e-18  Score=128.28  Aligned_cols=105  Identities=27%  Similarity=0.446  Sum_probs=84.6

Q ss_pred             ccchhhhhhHHHHHHHhcCCCCCCCCCCCCCCCCC--ccccccCCC---CCeeEEecCCCCCcc--ccCCccCCCCCCCc
Q 043483           32 NISIHVAASEIERQALLNSGWWKDRIPHNTSDHCG--WVGITCDYE---GRITDIGLAESKIKG--ELGRLNFSCFPNLQ  104 (140)
Q Consensus        32 ~~~~~~~~l~~~~~~l~~~~~~~~~~w~~~~~~C~--w~gv~C~~~---~~v~~L~L~~~~l~g--~l~~~~l~~l~~L~  104 (140)
                      +.+.|..++.++|+++.++.  ...+|..+.++|.  |.||.|+..   ++|+.|+|+++++.|  .+|. .+.++++|+
T Consensus         3 c~~~~~~aL~~~k~~~~~~~--~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~   79 (313)
T 1ogq_A            3 CNPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SLANLPYLN   79 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG--GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GGGGCTTCS
T ss_pred             CCHHHHHHHHHHHHhcCCcc--cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh-hHhCCCCCC
Confidence            45667889999999986543  5678977788998  999999854   799999999999998  7776 678888888


Q ss_pred             EEEccC-CccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483          105 YLDLSN-NNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus       105 ~L~l~~-n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      +|++++ |.+.|.+|..++++++|++|++++|.++|
T Consensus        80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  115 (313)
T 1ogq_A           80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG  115 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE
T ss_pred             eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC
Confidence            888884 78887788777777777777777777754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.70  E-value=1.3e-17  Score=137.95  Aligned_cols=105  Identities=16%  Similarity=0.239  Sum_probs=93.1

Q ss_pred             cchhhhhhHHHHHHHhcCCCCCC-------CCCCCCCCCCCc---cccccCCCCCeeEEecCCCCCccccCCccCCCCCC
Q 043483           33 ISIHVAASEIERQALLNSGWWKD-------RIPHNTSDHCGW---VGITCDYEGRITDIGLAESKIKGELGRLNFSCFPN  102 (140)
Q Consensus        33 ~~~~~~~l~~~~~~l~~~~~~~~-------~~w~~~~~~C~w---~gv~C~~~~~v~~L~L~~~~l~g~l~~~~l~~l~~  102 (140)
                      ...|+.|+.+.++++....|...       .+|..+.++|.|   .||+|+..++|++|+|+++++.|.+|+ .++++++
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~-~l~~L~~  106 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD-AIGQLTE  106 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG-GGGGCTT
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh-HHhcCcc
Confidence            34478899999999888776533       379888999999   999998889999999999999999997 8999999


Q ss_pred             CcEEEccCC-----------------------------------------------------------------------
Q 043483          103 LQYLDLSNN-----------------------------------------------------------------------  111 (140)
Q Consensus       103 L~~L~l~~n-----------------------------------------------------------------------  111 (140)
                      |++|+|++|                                                                       
T Consensus       107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l  186 (636)
T 4eco_A          107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT  186 (636)
T ss_dssp             CCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTT
T ss_pred             ceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhh
Confidence            999999988                                                                       


Q ss_pred             -------ccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483          112 -------NLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus       112 -------~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                             +++| ||++++++++|++|+|++|.++|
T Consensus       187 ~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~  220 (636)
T 4eco_A          187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVA  220 (636)
T ss_dssp             TTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCG
T ss_pred             hhccccCCCcc-CCHHHhcccCCCEEECcCCcccc
Confidence                   4456 99999999999999999999987

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=3e-16  Score=134.44  Aligned_cols=107  Identities=19%  Similarity=0.266  Sum_probs=89.6

Q ss_pred             cccchhhhhhHHHHHHHhcCCCCCCCCCCCCCCC--CCc------------cccccCCCCCeeEEecCCCCCccccCCcc
Q 043483           31 TNISIHVAASEIERQALLNSGWWKDRIPHNTSDH--CGW------------VGITCDYEGRITDIGLAESKIKGELGRLN   96 (140)
Q Consensus        31 ~~~~~~~~~l~~~~~~l~~~~~~~~~~w~~~~~~--C~w------------~gv~C~~~~~v~~L~L~~~~l~g~l~~~~   96 (140)
                      +....|..++.++|+++.++.|.....|. ..++  |+|            .||.|+..++|+.|+|+++++.|.+|+ .
T Consensus       265 ~~~~~d~~ALl~~k~~l~~~~W~~~~~~~-~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~-~  342 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALDGKNWRYYSGTI-NNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD-A  342 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCCCCCSSC-SSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECG-G
T ss_pred             ccchHHHHHHHHHHHHcCCCCCCcCCCcc-cccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCch-H
Confidence            34456789999999998766443322232 2355  999            999999889999999999999999997 8


Q ss_pred             CCCCCCCcEEEc-cCCccccc-----------------------------------------------------------
Q 043483           97 FSCFPNLQYLDL-SNNNLSGS-----------------------------------------------------------  116 (140)
Q Consensus        97 l~~l~~L~~L~l-~~n~l~G~-----------------------------------------------------------  116 (140)
                      +++|++|++|+| ++|.+.|.                                                           
T Consensus       343 l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~  422 (876)
T 4ecn_A          343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR  422 (876)
T ss_dssp             GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCC
T ss_pred             HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccc
Confidence            999999999999 88876665                                                           


Q ss_pred             -----------------cchhhcCCCCCCEEeCcCCcCcC
Q 043483          117 -----------------ILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus       117 -----------------iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                                       ||+.++++++|++|+|++|+|+|
T Consensus       423 l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg  462 (876)
T 4ecn_A          423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY  462 (876)
T ss_dssp             CCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCG
T ss_pred             cchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCC
Confidence                             89999999999999999999987

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.35  E-value=4.2e-13  Score=102.83  Aligned_cols=105  Identities=12%  Similarity=0.054  Sum_probs=77.7

Q ss_pred             cccchhhhhhHHHHHHHhcCCCCCCCCC----CCCCCCCCccccccCC---------CCCeeEEecCCCCCccccCCccC
Q 043483           31 TNISIHVAASEIERQALLNSGWWKDRIP----HNTSDHCGWVGITCDY---------EGRITDIGLAESKIKGELGRLNF   97 (140)
Q Consensus        31 ~~~~~~~~~l~~~~~~l~~~~~~~~~~w----~~~~~~C~w~gv~C~~---------~~~v~~L~L~~~~l~g~l~~~~l   97 (140)
                      +...++..++.++|..+..+.......|    ....++|.|.|+.|+.         ..+|+.|+|+++++. .+|. .+
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~-~l  100 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD-QA  100 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS-CG
T ss_pred             ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh-hh
Confidence            3445578899999998865543334567    3467899999999952         368899999988887 5665 56


Q ss_pred             CCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           98 SCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        98 ~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .++++|++|++++|.+. .+|..++++++|++|++++|.++
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~  140 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR  140 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc
Confidence            77777777777777777 77777777777777777777765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.19  E-value=5.1e-11  Score=86.78  Aligned_cols=81  Identities=23%  Similarity=0.283  Sum_probs=60.1

Q ss_pred             CCCCCCCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCC
Q 043483           58 PHNTSDHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNL  127 (140)
Q Consensus        58 w~~~~~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L  127 (140)
                      |..+.+.|+|.+|.|...          ..++.|+|++|.+.+..+. .+..+++|++|++++|.+.+..+..+.++++|
T Consensus        12 ~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L   90 (229)
T 3e6j_A           12 ACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPG-VFDSLINLKELYLGSNQLGALPVGVFDSLTQL   90 (229)
T ss_dssp             CCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHH-HhhCccCCcEEECCCCCCCCcChhhcccCCCc
Confidence            444788999999999642          3678899999999875554 57777888888888888764333446777778


Q ss_pred             CEEeCcCCcCcC
Q 043483          128 KYLDLDRNNLSG  139 (140)
Q Consensus       128 ~~L~ls~N~lsG  139 (140)
                      ++|+|++|++++
T Consensus        91 ~~L~Ls~N~l~~  102 (229)
T 3e6j_A           91 TVLDLGTNQLTV  102 (229)
T ss_dssp             CEEECCSSCCCC
T ss_pred             CEEECCCCcCCc
Confidence            888887777764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.15  E-value=9.2e-11  Score=89.69  Aligned_cols=75  Identities=17%  Similarity=0.242  Sum_probs=65.1

Q ss_pred             CCCccccccCCC------------CCeeEEecCC-CCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEE
Q 043483           64 HCGWVGITCDYE------------GRITDIGLAE-SKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYL  130 (140)
Q Consensus        64 ~C~w~gv~C~~~------------~~v~~L~L~~-~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L  130 (140)
                      .|.|..|.|...            .+++.|+|++ |.|.+..+. .|..+++|+.|+|++|+|+|..|..|.++++|++|
T Consensus         7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L   85 (347)
T 2ifg_A            7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (347)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence            589999999754            2488999996 999865444 69999999999999999999888899999999999


Q ss_pred             eCcCCcCcC
Q 043483          131 DLDRNNLSG  139 (140)
Q Consensus       131 ~ls~N~lsG  139 (140)
                      +|++|+|++
T Consensus        86 ~l~~N~l~~   94 (347)
T 2ifg_A           86 NLSFNALES   94 (347)
T ss_dssp             ECCSSCCSC
T ss_pred             eCCCCccce
Confidence            999999986

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.12  E-value=1.4e-10  Score=80.89  Aligned_cols=76  Identities=24%  Similarity=0.288  Sum_probs=48.1

Q ss_pred             CCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeC
Q 043483           63 DHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDL  132 (140)
Q Consensus        63 ~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~l  132 (140)
                      ..|.|..+.|...          ..++.|+|++|.+.+..+. .+..+++|++|++++|++++..|..+.++++|++|+|
T Consensus         7 C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A            7 CSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPG-VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             CEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChh-hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            4466777777531          3567777777777754443 5666677777777777766544444566666666666


Q ss_pred             cCCcCcC
Q 043483          133 DRNNLSG  139 (140)
Q Consensus       133 s~N~lsG  139 (140)
                      ++|+|++
T Consensus        86 ~~N~l~~   92 (170)
T 3g39_A           86 NDNQLKS   92 (170)
T ss_dssp             CSSCCCC
T ss_pred             CCCccCE
Confidence            6666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.09  E-value=1.8e-10  Score=81.69  Aligned_cols=76  Identities=22%  Similarity=0.330  Sum_probs=40.7

Q ss_pred             CCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeC
Q 043483           63 DHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDL  132 (140)
Q Consensus        63 ~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~l  132 (140)
                      ..|.|..+.|...          ..++.|++++|.+.+..+...+..+++|++|++++|.+++.+|..+.++++|++|+|
T Consensus         6 C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A            6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            3456666666421          245666666666654322212455555555555555555555555555555555555


Q ss_pred             cCCcCc
Q 043483          133 DRNNLS  138 (140)
Q Consensus       133 s~N~ls  138 (140)
                      ++|+++
T Consensus        86 s~N~l~   91 (192)
T 1w8a_A           86 GENKIK   91 (192)
T ss_dssp             CSCCCC
T ss_pred             CCCcCC
Confidence            555554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.06  E-value=4.3e-10  Score=78.40  Aligned_cols=77  Identities=23%  Similarity=0.311  Sum_probs=46.7

Q ss_pred             CCCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEe
Q 043483           62 SDHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLD  131 (140)
Q Consensus        62 ~~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~  131 (140)
                      ...|.|.++.|...          ..++.|++++|.+.+. +...+..+++|++|++++|.+++..|..+.++++|++|+
T Consensus         4 ~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   82 (177)
T 2o6r_A            4 RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY   82 (177)
T ss_dssp             TCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence            34577888888532          3567777777777643 222356666666666666666644444456666666666


Q ss_pred             CcCCcCcC
Q 043483          132 LDRNNLSG  139 (140)
Q Consensus       132 ls~N~lsG  139 (140)
                      +++|.+++
T Consensus        83 l~~N~l~~   90 (177)
T 2o6r_A           83 LHENKLQS   90 (177)
T ss_dssp             CCSSCCCC
T ss_pred             CCCCCccc
Confidence            66666553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.05  E-value=4.5e-10  Score=80.11  Aligned_cols=78  Identities=23%  Similarity=0.328  Sum_probs=51.2

Q ss_pred             CCCCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEE
Q 043483           61 TSDHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYL  130 (140)
Q Consensus        61 ~~~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L  130 (140)
                      ....|.|.+|.|...          .+++.|+++++.+.+. +...+..+++|++|++++|.+.+..+..+.++++|++|
T Consensus         3 ~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   81 (208)
T 2o6s_A            3 SRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYL   81 (208)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEE
Confidence            345688999999642          2578888888888743 33245666777777777777664434445666666666


Q ss_pred             eCcCCcCcC
Q 043483          131 DLDRNNLSG  139 (140)
Q Consensus       131 ~ls~N~lsG  139 (140)
                      ++++|++++
T Consensus        82 ~Ls~n~l~~   90 (208)
T 2o6s_A           82 NLSTNQLQS   90 (208)
T ss_dssp             ECCSSCCCC
T ss_pred             ECCCCcCCc
Confidence            666666653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.02  E-value=2.6e-10  Score=95.96  Aligned_cols=62  Identities=31%  Similarity=0.566  Sum_probs=34.3

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .++.|+|++|.++|.+|. .+++++.|+.|+|++|.++|.||+.++++++|++|||++|+++|
T Consensus       633 ~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g  694 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG  694 (768)
T ss_dssp             CCCEEECCSSCCBSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             cccEEECcCCcccccCCH-HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence            455566666666655554 45555555555555555555555555555555555555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.00  E-value=9.2e-10  Score=79.68  Aligned_cols=79  Identities=28%  Similarity=0.329  Sum_probs=55.2

Q ss_pred             CCCCCCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCC
Q 043483           59 HNTSDHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLK  128 (140)
Q Consensus        59 ~~~~~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~  128 (140)
                      ++....|.|..+.|...          ..++.|++++|.+.+..+. .+..+++|++|++++|.+.+..|..|.++++|+
T Consensus         5 CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~   83 (220)
T 2v9t_B            5 CPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPG-AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN   83 (220)
T ss_dssp             SCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCC
T ss_pred             CCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHh-HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC
Confidence            33445578888888642          2578888888888754332 577777777777777777766677777777777


Q ss_pred             EEeCcCCcCc
Q 043483          129 YLDLDRNNLS  138 (140)
Q Consensus       129 ~L~ls~N~ls  138 (140)
                      +|+|++|+++
T Consensus        84 ~L~Ls~N~l~   93 (220)
T 2v9t_B           84 SLVLYGNKIT   93 (220)
T ss_dssp             EEECCSSCCC
T ss_pred             EEECCCCcCC
Confidence            7777777765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.94  E-value=2.6e-09  Score=74.85  Aligned_cols=61  Identities=26%  Similarity=0.292  Sum_probs=34.9

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .++.|+|++|.+.+..+. .+..+++|++|+|++|++++..+..+.++++|++|+|++|+++
T Consensus        34 ~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~   94 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPG-VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK   94 (174)
T ss_dssp             TCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCcEEEeCCCCccccCHH-HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence            456666666666654333 4556666666666666666433333455666666666666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.93  E-value=1.5e-09  Score=87.22  Aligned_cols=74  Identities=28%  Similarity=0.347  Sum_probs=46.0

Q ss_pred             CCCccccccCCC------------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEe
Q 043483           64 HCGWVGITCDYE------------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLD  131 (140)
Q Consensus        64 ~C~w~gv~C~~~------------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~  131 (140)
                      .|.|.|+ |+..            .+++.|+|++|.+.+..+. .+.++++|++|++++|.+.+..|..++++++|++|+
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence            4777776 6431            2577778887777754443 466666666666666666655555566666666666


Q ss_pred             CcCCcCcC
Q 043483          132 LDRNNLSG  139 (140)
Q Consensus       132 ls~N~lsG  139 (140)
                      +++|++++
T Consensus        81 Ls~n~l~~   88 (549)
T 2z81_A           81 LSDNHLSS   88 (549)
T ss_dssp             CTTSCCCS
T ss_pred             CCCCccCc
Confidence            66665553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.92  E-value=2.2e-09  Score=76.34  Aligned_cols=60  Identities=30%  Similarity=0.347  Sum_probs=31.5

Q ss_pred             eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ++.|+|++|.+++..+. .|..+++|++|+|++|.+++..|..|.++++|++|+|++|.++
T Consensus        56 L~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~  115 (193)
T 2wfh_A           56 LTLIDLSNNRISTLSNQ-SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS  115 (193)
T ss_dssp             CCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCEEECCCCcCCEeCHh-HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence            44444444444432221 3555556666666666665544445556666666666666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.91  E-value=2.4e-09  Score=77.52  Aligned_cols=77  Identities=17%  Similarity=0.251  Sum_probs=35.8

Q ss_pred             CCCCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEE
Q 043483           61 TSDHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYL  130 (140)
Q Consensus        61 ~~~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L  130 (140)
                      ....|.|..+.|...          ..++.|+|++|.+.+..+...+..+++|++|++++|.+++..|..+.++++|++|
T Consensus         7 ~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L   86 (220)
T 2v70_A            7 EKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI   86 (220)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence            334466666666431          2345666666666544322123444444444444444443333334444444444


Q ss_pred             eCcCCcC
Q 043483          131 DLDRNNL  137 (140)
Q Consensus       131 ~ls~N~l  137 (140)
                      +|++|++
T Consensus        87 ~Ls~N~l   93 (220)
T 2v70_A           87 LLTSNRL   93 (220)
T ss_dssp             ECCSSCC
T ss_pred             ECCCCcc
Confidence            4444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.89  E-value=2.6e-09  Score=81.81  Aligned_cols=61  Identities=28%  Similarity=0.324  Sum_probs=36.4

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +++.|++++|.+.+. +...+.++++|++|++++|.+.+..|..+.++++|++|++++|+++
T Consensus        53 ~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  113 (353)
T 2z80_A           53 AVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS  113 (353)
T ss_dssp             TCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             cCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence            566677777766643 2224566666666666666666555555666666666666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.86  E-value=3.6e-09  Score=74.97  Aligned_cols=63  Identities=27%  Similarity=0.380  Sum_probs=42.9

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|+|++|.+.+..+. .+..+++|++|++++|++++.+|..+..+++|++|++++|.+++
T Consensus        78 ~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           78 SHIQELQLGENKIKEISNK-MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TTCCEEECCSCCCCEECSS-SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            3566666666666654333 46677777777777777777777777777777777777777765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.83  E-value=2.9e-09  Score=78.12  Aligned_cols=61  Identities=21%  Similarity=0.310  Sum_probs=29.5

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .++.|+|+++.+.+..+. .+.++++|++|++++|.+.+..|..+.++++|++|++++|+++
T Consensus        36 ~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   96 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA   96 (251)
T ss_dssp             TCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             CCCEEEccCCCcCccCHh-HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc
Confidence            345555555555543222 3445555555555555555444444444455555555444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.83  E-value=5.1e-09  Score=77.57  Aligned_cols=77  Identities=22%  Similarity=0.289  Sum_probs=54.6

Q ss_pred             CCCCCccccccCCCC---------------------CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchh
Q 043483           62 SDHCGWVGITCDYEG---------------------RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQ  120 (140)
Q Consensus        62 ~~~C~w~gv~C~~~~---------------------~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~  120 (140)
                      .+.|.|.|+.|.+.+                     .++.|+|+++.+.+. +...+..+++|++|++++|.+....+..
T Consensus         2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~i~~~~   80 (270)
T 2o6q_A            2 EALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQTLPAGI   80 (270)
T ss_dssp             CCCBGGGTCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCSCCCTTT
T ss_pred             CccCCCCCCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccCeeChhh
Confidence            467888887775433                     345566666666532 2225788899999999999988544445


Q ss_pred             hcCCCCCCEEeCcCCcCcC
Q 043483          121 IGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus       121 ~~~l~~L~~L~ls~N~lsG  139 (140)
                      +.++++|++|++++|.+++
T Consensus        81 ~~~l~~L~~L~l~~n~l~~   99 (270)
T 2o6q_A           81 FKELKNLETLWVTDNKLQA   99 (270)
T ss_dssp             TSSCTTCCEEECCSSCCCC
T ss_pred             hcCCCCCCEEECCCCcCCc
Confidence            6889999999999998764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.75  E-value=2.1e-08  Score=69.77  Aligned_cols=64  Identities=19%  Similarity=0.169  Sum_probs=55.3

Q ss_pred             CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      ..+++.|+|++|.|.+. ++..+..+++|++|+|++|++++..|..+.++++|++|+|++|.+++
T Consensus        53 l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           53 LTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             cccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            35799999999999954 44358999999999999999997666679999999999999999875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.75  E-value=1.7e-08  Score=79.81  Aligned_cols=63  Identities=22%  Similarity=0.276  Sum_probs=47.9

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|+|++|++.+..+. .|.++++|++|++++|.+.+..|..+.++++|++|+|++|++++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~  137 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV  137 (452)
T ss_dssp             TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB
T ss_pred             CCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc
Confidence            3688899999988865444 67778888888888888877666777777778888777777653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.75  E-value=1.9e-08  Score=76.34  Aligned_cols=79  Identities=23%  Similarity=0.251  Sum_probs=66.2

Q ss_pred             CCCCCCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCC
Q 043483           59 HNTSDHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLK  128 (140)
Q Consensus        59 ~~~~~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~  128 (140)
                      ++....|.|..+.|...          .+++.|++++|.+.+..+. .+.++++|++|++++|.+.+..|..++++++|+
T Consensus        27 cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  105 (332)
T 2ft3_A           27 CPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ  105 (332)
T ss_dssp             CCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred             CCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHh-HhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence            33344578999988632          3689999999999865444 699999999999999999988899999999999


Q ss_pred             EEeCcCCcCc
Q 043483          129 YLDLDRNNLS  138 (140)
Q Consensus       129 ~L~ls~N~ls  138 (140)
                      +|++++|+++
T Consensus       106 ~L~L~~n~l~  115 (332)
T 2ft3_A          106 KLYISKNHLV  115 (332)
T ss_dssp             EEECCSSCCC
T ss_pred             EEECCCCcCC
Confidence            9999999876

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.74  E-value=2.2e-08  Score=71.08  Aligned_cols=61  Identities=25%  Similarity=0.337  Sum_probs=36.7

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .++.|+|++|.+. .+|. .+..+++|++|++++|.+++..|..|.++++|++|+|++|++++
T Consensus        32 ~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~   92 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC   92 (193)
T ss_dssp             TCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence            4566666666665 3443 46666666666666666665555556666666666666666553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.74  E-value=1.1e-08  Score=82.80  Aligned_cols=63  Identities=30%  Similarity=0.366  Sum_probs=49.9

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      ..++.|+|++|.|++ +++..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++
T Consensus        52 ~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~  114 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS  114 (635)
T ss_dssp             TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             cCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence            368999999999985 444368888888888888888886556678888888888888887753

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.72  E-value=1.4e-08  Score=76.04  Aligned_cols=77  Identities=30%  Similarity=0.398  Sum_probs=58.2

Q ss_pred             CCCCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccc--cccchhhcCCCCCC
Q 043483           61 TSDHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLS--GSILSQIGSLSNLK  128 (140)
Q Consensus        61 ~~~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~--G~iP~~~~~l~~L~  128 (140)
                      ....|.|.++.|...          .+++.|+|+++.+. .++...+.++++|++|++++|.+.  |.+|..+..+++|+
T Consensus         3 ~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~   81 (306)
T 2z66_A            3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK   81 (306)
T ss_dssp             TTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred             CCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccC
Confidence            345589999999742          37899999999988 455534788999999999999887  44466666777777


Q ss_pred             EEeCcCCcCc
Q 043483          129 YLDLDRNNLS  138 (140)
Q Consensus       129 ~L~ls~N~ls  138 (140)
                      +|++++|.++
T Consensus        82 ~L~Ls~n~i~   91 (306)
T 2z66_A           82 YLDLSFNGVI   91 (306)
T ss_dssp             EEECCSCSEE
T ss_pred             EEECCCCccc
Confidence            7777777654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.72  E-value=2e-08  Score=72.59  Aligned_cols=60  Identities=18%  Similarity=0.277  Sum_probs=26.4

Q ss_pred             eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ++.|+|++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|.++
T Consensus       107 L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          107 LKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            33444444444432222 3444444444444444444444444444444444444444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.70  E-value=4.1e-08  Score=74.36  Aligned_cols=77  Identities=25%  Similarity=0.287  Sum_probs=65.3

Q ss_pred             CCCCCCccccccCC----------CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEE
Q 043483           61 TSDHCGWVGITCDY----------EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYL  130 (140)
Q Consensus        61 ~~~~C~w~gv~C~~----------~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L  130 (140)
                      ....|.+..+.|..          ...++.|+|++|.+.+..+. .+.++++|++|++++|.+.+..|..++++++|++|
T Consensus        27 ~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            44567898888863          23688999999999865443 69999999999999999998889999999999999


Q ss_pred             eCcCCcCc
Q 043483          131 DLDRNNLS  138 (140)
Q Consensus       131 ~ls~N~ls  138 (140)
                      ++++|+++
T Consensus       106 ~Ls~n~l~  113 (330)
T 1xku_A          106 YLSKNQLK  113 (330)
T ss_dssp             ECCSSCCS
T ss_pred             ECCCCcCC
Confidence            99999876

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.70  E-value=2.3e-08  Score=78.48  Aligned_cols=61  Identities=25%  Similarity=0.321  Sum_probs=30.3

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccch-hhcCCCCCCEEeCcCCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILS-QIGSLSNLKYLDLDRNNL  137 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~-~~~~l~~L~~L~ls~N~l  137 (140)
                      .+++.|+|++|.+.+..+. .+.++++|++|++++|.+.+.+|+ .+.++++|++|++++|++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l   91 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF   91 (455)
T ss_dssp             TTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred             CccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence            3567777777777654333 344444444444444444444432 244444444444444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.70  E-value=7.6e-09  Score=78.40  Aligned_cols=62  Identities=23%  Similarity=0.374  Sum_probs=35.4

Q ss_pred             CCeeEEecCC-CCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAE-SKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~-~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+++.|++++ |.+.+.+|. .+.++++|++|++++|.+.|.+|..+.++++|++|++++|.++
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  138 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS  138 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             CCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC
Confidence            3566666663 666665554 4555555555555555555555555555555555555555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.66  E-value=5.7e-08  Score=76.56  Aligned_cols=61  Identities=26%  Similarity=0.333  Sum_probs=39.4

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .++.|+|++|.+.+..+. .+.++++|++|+|++|.+.+..|..|.++++|++|+|++|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~  125 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT  125 (440)
T ss_dssp             TCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred             CCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence            466777777777654333 5666666667776666666555556666666666666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.66  E-value=3.6e-08  Score=66.56  Aligned_cols=59  Identities=22%  Similarity=0.313  Sum_probs=27.2

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +++.|++++|.+.+.  . .+..+++|++|++++|.+.+.+|..+.++++|++|++++|.++
T Consensus        43 ~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~  101 (149)
T 2je0_A           43 ELEFLSTINVGLTSI--A-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK  101 (149)
T ss_dssp             TCCEEECTTSCCCCC--T-TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCC
T ss_pred             CCcEEECcCCCCCCc--h-hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCC
Confidence            444555555544432  1 3444444444444444444444444444444444444444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.65  E-value=6e-08  Score=67.79  Aligned_cols=64  Identities=19%  Similarity=0.212  Sum_probs=54.5

Q ss_pred             CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      ..+++.|+|++|.|.+ ++...+..+++|++|+|++|++.+..|..+.++++|++|+|++|.+..
T Consensus        56 l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           56 LVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            3579999999999996 444357899999999999999996555569999999999999999864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.65  E-value=4.2e-08  Score=75.65  Aligned_cols=79  Identities=23%  Similarity=0.267  Sum_probs=49.1

Q ss_pred             CCCCCCCCccccccCCC----------CCeeEEecCCCCCccccCCccCC-CCCCCcEEEccCCccccccchhhcCCCCC
Q 043483           59 HNTSDHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFS-CFPNLQYLDLSNNNLSGSILSQIGSLSNL  127 (140)
Q Consensus        59 ~~~~~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~-~l~~L~~L~l~~n~l~G~iP~~~~~l~~L  127 (140)
                      ++....|.+..+.|...          ..++.|+|++|.+.+..+. .+. .+++|++|+|++|.+.+..|..|.++++|
T Consensus        12 Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L   90 (361)
T 2xot_A           12 CPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL   90 (361)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CCCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCccChhhccCCCCC
Confidence            43445567777777531          2467788888887754332 344 66666666666666665555556666666


Q ss_pred             CEEeCcCCcCc
Q 043483          128 KYLDLDRNNLS  138 (140)
Q Consensus       128 ~~L~ls~N~ls  138 (140)
                      ++|+|++|+++
T Consensus        91 ~~L~Ls~N~l~  101 (361)
T 2xot_A           91 RYLDLSSNHLH  101 (361)
T ss_dssp             CEEECCSSCCC
T ss_pred             CEEECCCCcCC
Confidence            66666666654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.65  E-value=4.9e-08  Score=74.49  Aligned_cols=62  Identities=18%  Similarity=0.121  Sum_probs=41.3

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      +++.|+|++|++.+.+|. .+..+++|++|++++|.+.+.+|..++++++|++|++++|++.|
T Consensus       230 ~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  291 (328)
T 4fcg_A          230 KLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS  291 (328)
T ss_dssp             TCCEEECTTCTTCCBCCC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred             CCCEEECcCCcchhhhHH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence            455666666666655554 56667777777777777777777767777777777777766655

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.65  E-value=4.4e-08  Score=79.23  Aligned_cols=63  Identities=22%  Similarity=0.290  Sum_probs=49.2

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|+|++|.+.+..|. .|.++++|++|+|++|++++..|..+.++++|++||+++|++++
T Consensus       494 ~~L~~L~Ls~N~L~~l~~~-~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~  556 (635)
T 4g8a_A          494 RNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  556 (635)
T ss_dssp             TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred             cccCEEECCCCccCCcChH-HHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence            3577888888888765554 67888888888888888887777778888888888888888765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.65  E-value=6.3e-08  Score=69.93  Aligned_cols=63  Identities=29%  Similarity=0.321  Sum_probs=37.2

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|+|++|.+. .++...+..+++|++|++++|.+.+..|..+.++++|++|+|++|++++
T Consensus        80 ~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  142 (220)
T 2v9t_B           80 RSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT  142 (220)
T ss_dssp             SSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             cCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence            34555666666655 2333235566666666666666666555666666666666666666653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.64  E-value=7.4e-08  Score=66.86  Aligned_cols=63  Identities=22%  Similarity=0.222  Sum_probs=42.2

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|++++|.+++..+. .+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++
T Consensus        76 ~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           76 TKLTILYLHENKLQSLPNG-VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CccCEEECCCCCccccCHH-HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            4567777777777643332 46677777777777777774333345677777777777777765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.63  E-value=6.2e-08  Score=76.76  Aligned_cols=71  Identities=27%  Similarity=0.369  Sum_probs=49.6

Q ss_pred             ccccccCC----------CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCc
Q 043483           67 WVGITCDY----------EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNN  136 (140)
Q Consensus        67 w~gv~C~~----------~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~  136 (140)
                      |..|.|..          ...++.|+|++|.+.+..+. .|.++++|++|++++|.+.+..|..+.++++|++|+|++|+
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            45677753          23577888888888754443 57777777777777777777667777777777777777776


Q ss_pred             Cc
Q 043483          137 LS  138 (140)
Q Consensus       137 ls  138 (140)
                      ++
T Consensus        92 l~   93 (477)
T 2id5_A           92 LK   93 (477)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.61  E-value=5e-08  Score=79.28  Aligned_cols=62  Identities=21%  Similarity=0.165  Sum_probs=41.9

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ..++.|+|++|.+.+..+. .+.++++|++|++++|.+.+..|..|+++++|++|++++|+++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~   94 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI   94 (606)
T ss_dssp             TTCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS
T ss_pred             CcCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccc
Confidence            3577788888877754443 5666777777777777776666666666666776666666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.61  E-value=5.2e-08  Score=78.24  Aligned_cols=74  Identities=24%  Similarity=0.308  Sum_probs=58.3

Q ss_pred             CCccccccCCCCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhc-CCCCCCEEeCcCCcCcC
Q 043483           65 CGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIG-SLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        65 C~w~gv~C~~~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~-~l~~L~~L~ls~N~lsG  139 (140)
                      |...++.+.....++.|+|++|.+.+..|. .++.+++|++|++++|.+.+.+|..+. .+++|++|+|++|.+++
T Consensus       109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          109 NNISRVSCSRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             SCCCCEEECCCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CcCCCCCccccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            445556665556788889999988876554 688889999999999999988888775 78888888888888765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.61  E-value=9.3e-08  Score=64.50  Aligned_cols=61  Identities=28%  Similarity=0.446  Sum_probs=55.7

Q ss_pred             CCeeEEecCCCCCc-cccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIK-GELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~-g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.++++++.+. +.+|. .+..+++|++|++++|.+.+.  +.++++++|++|++++|.+++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~   78 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG   78 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS
T ss_pred             ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc
Confidence            57899999999998 78877 689999999999999999976  779999999999999999986

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.57  E-value=1.1e-07  Score=68.94  Aligned_cols=60  Identities=25%  Similarity=0.329  Sum_probs=32.5

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +++.|+|++|.+.+. +...+..+++|++|++++|.+. .+|..+.++++|++|++++|+++
T Consensus        89 ~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           89 QLTVLDLGTNQLTVL-PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             TCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred             CcCEEECCCCcCCcc-ChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence            455555555555532 2213455555555555555555 45555555555666666555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.57  E-value=5.9e-08  Score=80.18  Aligned_cols=64  Identities=13%  Similarity=0.232  Sum_probs=58.1

Q ss_pred             CCCeeEEecCCCCCccc-----------------cCCccCC--CCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCC
Q 043483           75 EGRITDIGLAESKIKGE-----------------LGRLNFS--CFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRN  135 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g~-----------------l~~~~l~--~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N  135 (140)
                      -.+++.|+|++|.++|.                 +|. .++  ++++|++|++++|.+.|.+|..++++++|++|++++|
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence            45789999999999985                 776 788  9999999999999999999999999999999999999


Q ss_pred             c-CcC
Q 043483          136 N-LSG  139 (140)
Q Consensus       136 ~-lsG  139 (140)
                      + ++|
T Consensus       284 ~~l~~  288 (636)
T 4eco_A          284 RGISG  288 (636)
T ss_dssp             TTSCH
T ss_pred             CCCcc
Confidence            8 876

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.56  E-value=7.7e-08  Score=66.15  Aligned_cols=61  Identities=33%  Similarity=0.439  Sum_probs=29.3

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccc-cchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGS-ILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~-iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +++.|++++|.+.+.+|. .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.++
T Consensus        72 ~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A           72 KLKKLELSENRIFGGLDM-LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             SCCEEEEESCCCCSCCCH-HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             CCCEEECcCCcCchHHHH-HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence            344455555555443322 233455555555555555532 1144555555555555555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.56  E-value=1.1e-07  Score=77.16  Aligned_cols=60  Identities=28%  Similarity=0.285  Sum_probs=28.5

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL  137 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l  137 (140)
                      +++.|+|++|.+.+..+. .+.++++|++|++++|.+.+..|..|+++++|++|++++|.+
T Consensus        33 ~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l   92 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSY-SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI   92 (606)
T ss_dssp             TCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CcCEEECCCCCcCEeChh-hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence            456666666665543322 344444444444444444443344444444444444444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.55  E-value=1.8e-07  Score=66.48  Aligned_cols=60  Identities=25%  Similarity=0.292  Sum_probs=25.0

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL  137 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l  137 (140)
                      +++.|++++|.+.+. +...+..+++|++|++++|.+.+..|..+.++++|++|++++|++
T Consensus        77 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  136 (208)
T 2o6s_A           77 SLTYLNLSTNQLQSL-PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL  136 (208)
T ss_dssp             TCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CcCEEECCCCcCCcc-CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence            344445554444422 111234444444444444444433333334444444444444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.55  E-value=1.6e-07  Score=68.68  Aligned_cols=62  Identities=26%  Similarity=0.328  Sum_probs=36.0

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      +++.|+|++|.+.+..+. .+..+++|++|++++|.+.+..|..+.++++|++|++++|++++
T Consensus        84 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  145 (251)
T 3m19_A           84 ELGTLGLANNQLASLPLG-VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS  145 (251)
T ss_dssp             TCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             cCCEEECCCCcccccChh-HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence            455555555555532222 35566666666666666664444445666666666666666653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.53  E-value=1.5e-07  Score=77.04  Aligned_cols=61  Identities=21%  Similarity=0.191  Sum_probs=38.2

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +++.|+|++|.+.+..+. .+..+++|++|++++|.+.+..|..++++++|++|+|++|.++
T Consensus        76 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  136 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS  136 (597)
T ss_dssp             CCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCcEEECCCCCCCCCChH-HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC
Confidence            355666666666654333 4666666777777766666655555666666666666666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.52  E-value=1.8e-07  Score=66.12  Aligned_cols=60  Identities=23%  Similarity=0.402  Sum_probs=47.3

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNN  136 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~  136 (140)
                      ..++.|++++|.+.+..+. .+..+++|++|++++|.+.+..|..++++++|++|++++|.
T Consensus        88 ~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A           88 SNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             TTCCEEEEECTTCBGGGSC-CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred             CCCCEEEeECCccCcccCh-hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence            4677888888888765554 67788888888888888887778888888888888888886

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.52  E-value=1.2e-07  Score=65.20  Aligned_cols=61  Identities=26%  Similarity=0.353  Sum_probs=54.4

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|++++|.+.+.  . .+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+++
T Consensus        49 ~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  109 (168)
T 2ell_A           49 VNLEFLSLINVGLISV--S-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD  109 (168)
T ss_dssp             GGCCEEEEESSCCCCC--S-SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS
T ss_pred             CCCCEEeCcCCCCCCh--h-hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc
Confidence            5789999999998864  3 68999999999999999998888888889999999999999876

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.52  E-value=1.8e-07  Score=75.70  Aligned_cols=62  Identities=24%  Similarity=0.314  Sum_probs=37.9

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+++.|+|++|.+.+..+. .+..+++|++|++++|.+++..|..|.++++|++||+++|+++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  113 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMP-DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ  113 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGG-GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             CCcCEEECCCCCccccChh-hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC
Confidence            4566666666666643322 4666666666666666666655566666666666666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.50  E-value=2.5e-07  Score=68.33  Aligned_cols=64  Identities=28%  Similarity=0.331  Sum_probs=54.8

Q ss_pred             CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      ..+++.|++++|.+.. ++...+..+++|++|++++|.+.+..+..+.++++|++|++++|++++
T Consensus        60 l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  123 (270)
T 2o6q_A           60 LTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS  123 (270)
T ss_dssp             CTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred             CCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe
Confidence            3579999999999984 444357899999999999999997666678999999999999999875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.50  E-value=1.6e-07  Score=76.95  Aligned_cols=60  Identities=25%  Similarity=0.351  Sum_probs=39.3

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCcccccc-chhhcCCCCCCEEeCcCCcCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSI-LSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~i-P~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      +++.|+|++|.+++ +|  .++.+++|+.|++++|.+++.+ |..++++++|++|+|++|.+++
T Consensus       487 ~L~~L~Ls~N~l~~-lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          487 CLEVLQASDNALEN-VD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             TCCEEECCSSCCCC-CG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCEEECCCCCCCC-Cc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            45566666666664 33  4666677777777777777655 6667777777777777776654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.49  E-value=1.9e-07  Score=79.33  Aligned_cols=62  Identities=23%  Similarity=0.196  Sum_probs=37.7

Q ss_pred             eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      ++.|+|++|.+.+.+++..+.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++
T Consensus        50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  111 (844)
T 3j0a_A           50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD  111 (844)
T ss_dssp             CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS
T ss_pred             CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc
Confidence            33334433333333323246667777777777777776667777777777777777777664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.49  E-value=2.7e-07  Score=68.42  Aligned_cols=59  Identities=27%  Similarity=0.226  Sum_probs=29.9

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNN  136 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~  136 (140)
                      .++.|+++++.+.+..+. .+..+++|++|++++|.+.+..|..+.++++|++|++++|.
T Consensus        33 ~l~~L~l~~n~i~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             TCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             CceEEEeeCCcCCccCHH-HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            455566666655532222 34555555555555555554444445555555555555553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.49  E-value=2e-07  Score=73.13  Aligned_cols=62  Identities=19%  Similarity=0.209  Sum_probs=28.6

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +++.|+|+++.+.+.+++..+..+++|++|++++|.+.+..|..++++++|++|++++|+++
T Consensus        55 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  116 (455)
T 3v47_A           55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD  116 (455)
T ss_dssp             TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCB
T ss_pred             cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCC
Confidence            34445555544444443323444444444444444444444444444444444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.48  E-value=1.6e-07  Score=76.96  Aligned_cols=61  Identities=23%  Similarity=0.316  Sum_probs=56.2

Q ss_pred             CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      ..+++.|+|++|.|. .+|. .++.+++|+.|+|++|.+++ +| .++++++|++|+|++|++++
T Consensus       462 l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~  522 (567)
T 1dce_A          462 LLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQ  522 (567)
T ss_dssp             GTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCS
T ss_pred             cccCcEeecCccccc-ccch-hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCC
Confidence            357999999999999 7777 79999999999999999997 78 89999999999999999986

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.48  E-value=1.5e-07  Score=68.16  Aligned_cols=62  Identities=19%  Similarity=0.259  Sum_probs=41.5

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCc-cccccchhhcCCCCCCEEeCcC-CcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNN-LSGSILSQIGSLSNLKYLDLDR-NNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~-l~G~iP~~~~~l~~L~~L~ls~-N~ls  138 (140)
                      ..++.|++++|.+.+. ++..+..+++|++|++++|. +++..|..+.++++|++|++++ |.++
T Consensus        31 ~~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~   94 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT   94 (239)
T ss_dssp             TTCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC
T ss_pred             CcccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee
Confidence            3677788888877743 33257777777777777775 6543334677777777777776 6664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.48  E-value=1.4e-07  Score=79.35  Aligned_cols=60  Identities=20%  Similarity=0.424  Sum_probs=36.1

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      +++.|+|++|.|. .+|. .++.+++|++|+|++|.++ .||..|+++++|++|+|++|.|+|
T Consensus       271 ~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          271 NLRVLDLSHNRLT-SLPA-ELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             TCCEEECTTSCCS-SCCS-SGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CCCEEeCcCCcCC-ccCh-hhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence            3455555555555 4444 4566666666666666665 566666666666666666666654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.47  E-value=3.5e-07  Score=67.71  Aligned_cols=61  Identities=21%  Similarity=0.282  Sum_probs=30.9

Q ss_pred             eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      ++.|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.|
T Consensus       159 L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  219 (272)
T 3rfs_A          159 LTELDLSYNQLQSLPEG-VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  219 (272)
T ss_dssp             CCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCEEECCCCCcCccCHH-HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence            44444444444422211 24555555555555555555444445555556666665555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.45  E-value=4.3e-07  Score=67.23  Aligned_cols=42  Identities=38%  Similarity=0.541  Sum_probs=20.6

Q ss_pred             CCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           97 FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        97 l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +..+++|++|++++|.+.+..|..++++++|++|++++|+++
T Consensus       129 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  170 (272)
T 3rfs_A          129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ  170 (272)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence            444455555555555555433333445555555555555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.44  E-value=4.3e-07  Score=72.54  Aligned_cols=64  Identities=19%  Similarity=0.251  Sum_probs=46.2

Q ss_pred             CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCcccc--ccchhhcCCCCCCEEeCcCCcCcC
Q 043483           75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSG--SILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G--~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      ...++.|++++|.+.+.+|. .+..+++|++|++++|.+.+  .+|..++++++|++|++++|.+++
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~  388 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY  388 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred             CCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence            35677788888887776555 57777777777777777775  566667777777777777777664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.43  E-value=2.8e-07  Score=73.62  Aligned_cols=62  Identities=23%  Similarity=0.280  Sum_probs=32.1

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+++.|+|++|.+.+..+. .+..+++|++|++++|.+.+..|..++++++|++||+++|+++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~   82 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTS-DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV   82 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHH-HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred             ccccEEECCCCcccccChh-hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence            3455555555555533222 3555555555555555555544555555555555555555543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.43  E-value=1.9e-07  Score=80.24  Aligned_cols=64  Identities=19%  Similarity=0.160  Sum_probs=57.9

Q ss_pred             CCCeeEEecCCCCCcc-----------------ccCCccCC--CCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCC
Q 043483           75 EGRITDIGLAESKIKG-----------------ELGRLNFS--CFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRN  135 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g-----------------~l~~~~l~--~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N  135 (140)
                      -.+++.|+|++|.++|                 .+|. .++  ++++|++|++++|.+.|.+|+.++++++|++|++++|
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            4578999999999998                 3776 677  9999999999999999999999999999999999999


Q ss_pred             c-CcC
Q 043483          136 N-LSG  139 (140)
Q Consensus       136 ~-lsG  139 (140)
                      + ++|
T Consensus       526 ~~lsg  530 (876)
T 4ecn_A          526 RGISA  530 (876)
T ss_dssp             TTSCH
T ss_pred             CCccc
Confidence            8 876

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.42  E-value=3.7e-07  Score=73.22  Aligned_cols=64  Identities=36%  Similarity=0.415  Sum_probs=52.7

Q ss_pred             CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      -.+++.|+|++|.+.+..+. .+..+++|++|++++|.+.+..|..++++++|++|++++|.+++
T Consensus        49 l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  112 (549)
T 2z81_A           49 CANLQVLILKSSRINTIEGD-AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT  112 (549)
T ss_dssp             CTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS
T ss_pred             CCcccEEECCCCCcCccChh-hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccc
Confidence            35788899999988865544 68888999999999999988777778889999999999888864

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.42  E-value=5.5e-07  Score=67.35  Aligned_cols=59  Identities=24%  Similarity=0.327  Sum_probs=22.7

Q ss_pred             eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483           78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL  137 (140)
Q Consensus        78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l  137 (140)
                      ++.|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|++
T Consensus       177 L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          177 LTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             CCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             CCEEECCCCCcCCcCHH-HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence            44444444444332222 233334444444444444333222333334444444444433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.42  E-value=4.3e-07  Score=69.97  Aligned_cols=61  Identities=21%  Similarity=0.214  Sum_probs=31.1

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +++.|+|++|.|.+..+. .|..+++|++|+|++|.+.+..|..|.++++|++|+|++|+++
T Consensus        89 ~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A           89 NLRYLDLSSNHLHTLDEF-LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             TCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCEEECCCCcCCcCCHH-HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence            455555555555432221 3455555555555555555444445555555555555555544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.41  E-value=5e-07  Score=67.00  Aligned_cols=61  Identities=26%  Similarity=0.232  Sum_probs=29.2

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +++.|++++|.+.+. +...+..+++|++|++++|.+.+..|..+.++++|++|++++|.++
T Consensus       154 ~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  214 (285)
T 1ozn_A          154 NLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (285)
T ss_dssp             TCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CccEEECCCCccccc-CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence            344444444444422 2212444555555555555555444555555555555555555544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.40  E-value=5e-07  Score=73.37  Aligned_cols=62  Identities=26%  Similarity=0.246  Sum_probs=41.1

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+++.|++++|.+.+..+. .+..+++|++|++++|.+.+.+|..+.++++|++|++++|+++
T Consensus       473 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          473 TNLTFLDLSKCQLEQISWG-VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             CCCCEEECCCCcCCccChh-hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            3556666666666654443 4666777777777777777766777777777777777777665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.40  E-value=4.7e-07  Score=66.86  Aligned_cols=61  Identities=21%  Similarity=0.285  Sum_probs=34.3

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +++.|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+.++++|++|++++|.++
T Consensus        53 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  113 (276)
T 2z62_A           53 ELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA  113 (276)
T ss_dssp             TCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             CCcEEECCCCcCCccCHH-HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCcc
Confidence            455555555555532222 3555666666666666666555555666666666666666554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.39  E-value=3.6e-07  Score=75.28  Aligned_cols=62  Identities=29%  Similarity=0.364  Sum_probs=35.3

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+++.|+|++|.+.+..+. .+.++++|++|++++|.+.+..|..++++++|++|++++|.++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   86 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS   86 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGG-GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC
T ss_pred             CCCcEEECCCCCCCCcCHH-HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC
Confidence            3566777777766643222 4555566666666666555555555555555555555555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.39  E-value=4.9e-07  Score=68.82  Aligned_cols=63  Identities=27%  Similarity=0.312  Sum_probs=52.6

Q ss_pred             CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      ..+++.|+|++|.|++..+. .|.++++|++|+|++|+|++..|..+..++ |+.|+|.+|.|..
T Consensus        55 l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           55 LGELRNLTIVKSGLRFVAPD-AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CCCCSEEECCSSCCCEECTT-GGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             ccCCCEEECCCCccceeCHH-HhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            46799999999999986655 689999999999999999964444455555 9999999999863

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.38  E-value=7.8e-07  Score=66.74  Aligned_cols=41  Identities=37%  Similarity=0.464  Sum_probs=16.3

Q ss_pred             CCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483           97 FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL  137 (140)
Q Consensus        97 l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l  137 (140)
                      +..+++|+.|++++|++++..+..+.++++|++|++++|++
T Consensus       144 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL  184 (290)
T ss_dssp             TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence            33344444444444444422112233444444444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.36  E-value=4.8e-07  Score=62.79  Aligned_cols=60  Identities=28%  Similarity=0.406  Sum_probs=30.5

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccch--hhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILS--QIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~--~~~~l~~L~~L~ls~N~ls  138 (140)
                      +++.|+|++|.+.+ +++..+..+++|++|++++|.+. .+|.  .+..+++|++|++++|.++
T Consensus        65 ~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           65 RLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             SCCEEECCSSCCCE-ECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             CCCEEECCCCcccc-cCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence            44555555555543 22212355555555555555553 3444  4555555666666555553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.36  E-value=2.4e-07  Score=77.93  Aligned_cols=60  Identities=32%  Similarity=0.441  Sum_probs=43.5

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+++.|+|++|.|+ .+|. .+..+++|++|+|++|.|+ .+|..++++++|++|+|++|.|+
T Consensus       247 ~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  306 (727)
T 4b8c_D          247 DFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT  306 (727)
T ss_dssp             CSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC
T ss_pred             CCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC
Confidence            35666666666666 5554 5777777888888888877 67777777888888888877764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.36  E-value=1.9e-07  Score=70.42  Aligned_cols=62  Identities=18%  Similarity=0.204  Sum_probs=46.3

Q ss_pred             CCeeEEecCCCCCccccCCccCCCC-----CCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCF-----PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l-----~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|+|++|.+.+. |. .+..+     ++|++|++++|.+.+..|..++++++|++|++++|++.|
T Consensus       121 ~~L~~L~Ls~N~l~~~-~~-~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  187 (312)
T 1wwl_A          121 PDLNILNLRNVSWATR-DA-WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG  187 (312)
T ss_dssp             CCCSEEEEESCBCSSS-SS-HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred             CCccEEEccCCCCcch-hH-HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence            4677777777777765 43 34444     788888888888887777788888888888888888654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.36  E-value=1.9e-07  Score=70.46  Aligned_cols=63  Identities=22%  Similarity=0.321  Sum_probs=52.6

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccc--cchhh--cCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGS--ILSQI--GSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~--iP~~~--~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|+|++|.+.+..+. .+..+++|++|++++|.+.|.  +|+.+  +++++|++|++++|++++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~  215 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCE-QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET  215 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTT-TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC
T ss_pred             CCCcEEEeeCCCCccchHH-HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc
Confidence            5789999999999865544 689999999999999998876  45555  889999999999999873

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.35  E-value=6.6e-07  Score=70.44  Aligned_cols=60  Identities=18%  Similarity=0.260  Sum_probs=32.1

Q ss_pred             eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ++.|+|++|.+.+..+. .+..+++|++|++++|.+.+..|..+.++++|++|+|++|+++
T Consensus       209 L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  268 (440)
T 3zyj_A          209 LDELDLSGNHLSAIRPG-SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT  268 (440)
T ss_dssp             CCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred             cCEEECCCCccCccChh-hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence            33444444444432222 4555555556666656555555555566666666666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.35  E-value=6e-07  Score=70.88  Aligned_cols=42  Identities=31%  Similarity=0.328  Sum_probs=21.7

Q ss_pred             CCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           97 FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        97 l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +..+++|++|++++|.+.+..|..+.++++|+.|+|++|+++
T Consensus       238 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence            444455555555555555444444555555555555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.35  E-value=8.3e-07  Score=71.30  Aligned_cols=62  Identities=19%  Similarity=0.267  Sum_probs=38.3

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      +++.|++++|.+.+..|. .+..+++|++|++++|.+++..|..+.++++|++|++++|.++|
T Consensus       471 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          471 NLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             TCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCEEECCCCccccCChh-hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            455556666655544343 46666666666666666666555556666666666666666655

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.35  E-value=9.4e-07  Score=66.27  Aligned_cols=62  Identities=21%  Similarity=0.195  Sum_probs=38.1

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      +++.|++++|.+.+..+. .+..+++|++|++++|++.+..|..+.++++|+.|++++|++++
T Consensus       101 ~L~~L~l~~N~l~~l~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G          101 ALTVLDVSFNRLTSLPLG-ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             TCCEEECCSSCCCCCCSS-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             CCCEEECCCCcCcccCHH-HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence            455666666666533222 46666777777777777765444456667777777777776653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.34  E-value=6.7e-07  Score=72.63  Aligned_cols=62  Identities=21%  Similarity=0.106  Sum_probs=34.7

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+++.|+|++|.+.+..|. .|.++++|++|++++|.+.+..|..++++++|++|++++|+++
T Consensus        57 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~  118 (606)
T 3t6q_A           57 INLTFLDLTRCQIYWIHED-TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS  118 (606)
T ss_dssp             TTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS
T ss_pred             ccceEEECCCCccceeChh-hccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc
Confidence            3455666666665543333 4555556666666666555555555555555555555555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.34  E-value=1.1e-06  Score=71.24  Aligned_cols=63  Identities=22%  Similarity=0.280  Sum_probs=37.1

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCcccc--ccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSG--SILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G--~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.+++++|.+.+.++. .+..+++|++|++++|.+++  .+|..+.++++|++|++++|++++
T Consensus       353 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~  417 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS  417 (562)
T ss_dssp             CCCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred             CCceEEECCCCccccchhh-hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence            4566666666666654444 45666666666666666654  344455566666666666665543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.34  E-value=8.9e-07  Score=65.33  Aligned_cols=63  Identities=25%  Similarity=0.265  Sum_probs=40.8

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|++++|.+.+..+. .+.++++|++|++++|.+.+..+..++++++|++|++++|.+++
T Consensus        76 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  138 (276)
T 2z62_A           76 SHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS  138 (276)
T ss_dssp             TTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred             cCCCEEECCCCccCccChh-hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence            4566777777776644333 46667777777777777765555456677777777777776653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.32  E-value=3.9e-07  Score=73.14  Aligned_cols=60  Identities=27%  Similarity=0.432  Sum_probs=44.8

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      +++.|+|++|.+.+..|. .+..+++|++|+|++|.+.+.+|  ++.+++|++|++++|.+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~   94 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE   94 (487)
T ss_dssp             GCCEEECCSSCCCCCCGG-GGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE
T ss_pred             CccEEEeeCCcCCCCCHH-HHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC
Confidence            678888888887764443 57788888888888888877655  7778888888887777653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.32  E-value=9.5e-07  Score=66.79  Aligned_cols=62  Identities=23%  Similarity=0.364  Sum_probs=41.6

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|++++|.+.+..+. .+..+++|++|++++|.+. .+|..+..+++|++|++++|++++
T Consensus       216 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          216 NNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             TTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             CCCCEEECCCCcCceeChh-hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence            3556666666666643332 4666777777777777777 677777777777777777777654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.31  E-value=3.1e-07  Score=75.48  Aligned_cols=73  Identities=22%  Similarity=0.296  Sum_probs=46.3

Q ss_pred             CCCCCCCC-----Ccccc-ccCCCCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEe
Q 043483           58 PHNTSDHC-----GWVGI-TCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLD  131 (140)
Q Consensus        58 w~~~~~~C-----~w~gv-~C~~~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~  131 (140)
                      |..+.++|     .|.|+ .|.. ++++.|+|+++++.+ +|. .+  +++|++|++++|.++ .+|   ..+++|++|+
T Consensus        36 W~~~~~~~~~~~~~~~~l~~C~~-~~L~~L~Ls~n~L~~-lp~-~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~  106 (571)
T 3cvr_A           36 WEKQALPGENRNEAVSLLKECLI-NQFSELQLNRLNLSS-LPD-NL--PPQITVLEITQNALI-SLP---ELPASLEYLD  106 (571)
T ss_dssp             HHTTCCTTCCHHHHHHHHHHHHH-TTCSEEECCSSCCSC-CCS-CC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred             HhccCCccccccchhhhcccccc-CCccEEEeCCCCCCc-cCH-hH--cCCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence            43355667     68998 6753 578888888888876 554 22  255666666666666 455   3455666666


Q ss_pred             CcCCcCcC
Q 043483          132 LDRNNLSG  139 (140)
Q Consensus       132 ls~N~lsG  139 (140)
                      +++|+|++
T Consensus       107 Ls~N~l~~  114 (571)
T 3cvr_A          107 ACDNRLST  114 (571)
T ss_dssp             CCSSCCSC
T ss_pred             ccCCCCCC
Confidence            66665553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.31  E-value=1.1e-06  Score=67.02  Aligned_cols=64  Identities=30%  Similarity=0.275  Sum_probs=50.5

Q ss_pred             CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      ..+++.|++++|.+.+..+. .+.++++|++|++++|.+++..+..++++++|++|++++|++++
T Consensus        75 l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (353)
T 2z80_A           75 CVNLQALVLTSNGINTIEED-SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT  138 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS
T ss_pred             CCCCCEEECCCCccCccCHh-hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc
Confidence            35788999999988865444 68888999999999999886444448888999999998888764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.30  E-value=7.3e-07  Score=67.57  Aligned_cols=62  Identities=27%  Similarity=0.432  Sum_probs=45.5

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|++++|.+.+..+. .+..+++|++|++++|.+. .+|..+.++++|++|++++|++++
T Consensus       217 ~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          217 SKLYRLGLGHNQIRMIENG-SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK  278 (332)
T ss_dssp             TTCSCCBCCSSCCCCCCTT-GGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred             CCCCEEECCCCcCCcCChh-HhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence            3566667777776654333 5777888888888888887 788778888888888888887764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.28  E-value=8.3e-07  Score=75.38  Aligned_cols=63  Identities=27%  Similarity=0.270  Sum_probs=43.1

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchh--hcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQ--IGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~--~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|+|++|.+.+..|. .+.++++|++|++++|.+.+.+|+.  ++++++|++|++++|.+++
T Consensus        73 ~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~  137 (844)
T 3j0a_A           73 PNLRILDLGSSKIYFLHPD-AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS  137 (844)
T ss_dssp             TTCCEEECTTCCCCEECTT-SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC
T ss_pred             CCCCEEECCCCcCcccCHh-HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc
Confidence            4567777777777655454 5777777777777777777666654  6777777777777776654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.28  E-value=9.6e-07  Score=70.95  Aligned_cols=63  Identities=27%  Similarity=0.373  Sum_probs=47.6

Q ss_pred             CCeeEEecCCCCCc-cccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIK-GELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~-g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|++++|.+. +.+|. .+..+++|++|++++|.+.+..|..+.++++|++|++++|++++
T Consensus       445 ~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  508 (570)
T 2z63_A          445 SSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS  508 (570)
T ss_dssp             TTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CcCcEEECcCCcCccccchh-hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence            35677777777776 45554 57778888888888888887777778888888888888887765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.28  E-value=8e-07  Score=62.73  Aligned_cols=62  Identities=19%  Similarity=0.342  Sum_probs=44.3

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|++++|.+.+..+. .+..+++|++|++++|.+.+.+| .+..+++|++|++++|.+++
T Consensus       112 ~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             TTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred             CCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC
Confidence            4678888888888765444 57777778888888777444566 47777777777777777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.27  E-value=8.3e-07  Score=61.57  Aligned_cols=59  Identities=24%  Similarity=0.317  Sum_probs=49.4

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchh-hcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQ-IGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~-~~~l~~L~~L~ls~N~ls  138 (140)
                      .+++.|++++|.+.+.  . .+..+++|++|++++|.+++ +|+. +..+++|++|++++|.++
T Consensus        42 ~~L~~L~Ls~N~l~~~--~-~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~  101 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL--D-GFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSLV  101 (176)
T ss_dssp             TCCSEEECCSSCCCEE--C-CCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEEECCSCCCC
T ss_pred             CCCCEEECCCCCCCcc--c-ccccCCCCCEEECCCCcccc-cCcchhhcCCCCCEEECCCCcCC
Confidence            3789999999999864  3 68889999999999999995 4544 589999999999999885

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.25  E-value=2e-06  Score=66.47  Aligned_cols=59  Identities=20%  Similarity=0.177  Sum_probs=25.3

Q ss_pred             eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483           78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL  137 (140)
Q Consensus        78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l  137 (140)
                      ++.|+++++.+.+..+. .+..+++|++|++++|.+.+..|..++++++|++|++++|.+
T Consensus        71 L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  129 (390)
T 3o6n_A           71 VELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL  129 (390)
T ss_dssp             CSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CcEEECCCCcccccChh-hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCcc
Confidence            34444444444322111 344444444444444444443333444444444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.25  E-value=9.9e-07  Score=66.36  Aligned_cols=59  Identities=20%  Similarity=0.329  Sum_probs=28.8

Q ss_pred             CeeEEecCCCCCccccCCccCCCC---CCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCF---PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l---~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      +++.|+|++|.+.+..|. .+..+   ++|++|++++|.++ .+|..+.  ++|++|++++|+++|
T Consensus       225 ~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNP-SAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             CCSSEECTTSCCCCCCCS-CCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred             CCCEEECCCCCCCccchh-hHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence            445555555555544332 23333   45555555555555 4454432  455555555555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.25  E-value=1.7e-06  Score=68.50  Aligned_cols=62  Identities=19%  Similarity=0.187  Sum_probs=38.3

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      +++.|+|++|.+.+..+. .+..+++|++|++++|.+.+..|..+.++++|++|++++|++++
T Consensus       249 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  310 (477)
T 2id5_A          249 YLRFLNLSYNPISTIEGS-MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT  310 (477)
T ss_dssp             TCCEEECCSSCCCEECTT-SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred             ccCeeECCCCcCCccChh-hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence            456666666666533222 46666666666666666666666666666666666666666653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.25  E-value=4e-07  Score=68.80  Aligned_cols=59  Identities=27%  Similarity=0.443  Sum_probs=31.4

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +++.|+|++|.+.+..+. .+..+++|++|++++|.+.+..|  +..+++|++|++++|+++
T Consensus        35 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~   93 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ   93 (317)
T ss_dssp             GCSEEECTTSCCCCCCHH-HHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE
T ss_pred             CCCEEECcCCccCcCCHH-HhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc
Confidence            455555555555543222 35555555555555555554433  555555555555555543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.24  E-value=6.8e-07  Score=67.27  Aligned_cols=39  Identities=23%  Similarity=0.276  Sum_probs=19.9

Q ss_pred             CCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483           99 CFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL  137 (140)
Q Consensus        99 ~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l  137 (140)
                      .+++|++|++++|.+.+..|..++++++|++|++++|++
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  181 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPG  181 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTT
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCC
Confidence            344555555555555444444455555555555555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.23  E-value=1.7e-06  Score=65.26  Aligned_cols=63  Identities=27%  Similarity=0.315  Sum_probs=43.3

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhh-cCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~-~~l~~L~~L~ls~N~lsG  139 (140)
                      ..++.|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++
T Consensus       120 ~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGB-CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCCCEEECCCCCCCCccch-hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence            3566777777777653332 57777788888888888877666665 367777777777777653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.22  E-value=2.2e-06  Score=70.11  Aligned_cols=63  Identities=29%  Similarity=0.320  Sum_probs=41.9

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|+|++|.+.+ +|+..+..+++|++|++++|.+.+..|..++++++|++|++++|.+++
T Consensus       123 ~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          123 PLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             TTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             CCCCEEEeeCCCCCC-CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            356666666666663 333235677777777777777777666667777777777777777654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.19  E-value=2.6e-06  Score=70.11  Aligned_cols=62  Identities=32%  Similarity=0.362  Sum_probs=33.8

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      +++.|+|++|.+.+..+. .+.++++|++|++++|.+.+..|..++++++|++|++++|.+++
T Consensus        98 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  159 (680)
T 1ziw_A           98 NLTELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA  159 (680)
T ss_dssp             TCSEEECCSSCCCCCCSC-TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred             CCCEEECCCCccCccChh-HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence            455555555555432222 45555666666666666655555555556666666666555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.18  E-value=1.2e-06  Score=67.09  Aligned_cols=74  Identities=22%  Similarity=0.324  Sum_probs=50.4

Q ss_pred             CCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccch-hhcCCCCCCE-E
Q 043483           63 DHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILS-QIGSLSNLKY-L  130 (140)
Q Consensus        63 ~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~-~~~~l~~L~~-L  130 (140)
                      ..|.+..|.|...          ..++.|+|++|.|+ .+|+-.|.++++|++|+|++|.+.+.+|+ .|.++++|+. +
T Consensus         7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l   85 (350)
T 4ay9_X            7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   85 (350)
T ss_dssp             SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred             cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence            3477888899531          36889999999988 45554688899999999999888766664 3455554443 3


Q ss_pred             eCcCCcC
Q 043483          131 DLDRNNL  137 (140)
Q Consensus       131 ~ls~N~l  137 (140)
                      +++.|++
T Consensus        86 ~~~~N~l   92 (350)
T 4ay9_X           86 IEKANNL   92 (350)
T ss_dssp             EEEETTC
T ss_pred             cccCCcc
Confidence            3333443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.16  E-value=1.5e-06  Score=65.10  Aligned_cols=61  Identities=25%  Similarity=0.416  Sum_probs=49.9

Q ss_pred             CCeeEEecCCCCCcc--ccCCccCCCCCCCcEEEccCCccccccchhhcCCC--CCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKG--ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLS--NLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g--~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~--~L~~L~ls~N~lsG  139 (140)
                      .+++.|+|++|.|.+  .++. .+..+++|+.|+|++|.+.+.  .++..+.  +|++|+|++|.+++
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             CCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            579999999999997  3443 467899999999999999975  3344444  99999999999975

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.16  E-value=4.3e-06  Score=64.56  Aligned_cols=63  Identities=29%  Similarity=0.319  Sum_probs=43.2

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|+|++|.+. .+|...+..+++|++|++++|.+.+..|..+.++++|++|++++|++++
T Consensus       117 ~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             CCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            35666777777666 3443235677777777777777776666667777777777777777654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.14  E-value=1.4e-06  Score=63.00  Aligned_cols=63  Identities=19%  Similarity=0.249  Sum_probs=43.2

Q ss_pred             CCeeEEecCCCC-CccccCCccCCCCCCCcEEEccC-CccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESK-IKGELGRLNFSCFPNLQYLDLSN-NNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~-l~g~l~~~~l~~l~~L~~L~l~~-n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|++++|. +. .+++..+..+++|++|++++ |.+++..|..+.++++|++|++++|.+++
T Consensus        55 ~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~  119 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM  119 (239)
T ss_dssp             TTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS
T ss_pred             CCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc
Confidence            467777777776 55 34433567777777777777 77775444567777777777777776654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.12  E-value=4.9e-06  Score=61.48  Aligned_cols=58  Identities=22%  Similarity=0.309  Sum_probs=39.4

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|+|++|.+.+. +  ++..+++|++|++++|.+.+ +|.. .. ++|++|++++|++++
T Consensus        63 ~~L~~L~L~~N~i~~~-~--~l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~  120 (263)
T 1xeu_A           63 TNLKELHLSHNQISDL-S--PLKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD  120 (263)
T ss_dssp             TTCCEEECCSSCCCCC-G--GGTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB
T ss_pred             CCCCEEECCCCccCCC-h--hhccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC
Confidence            4677777777777743 2  26777777777777777775 4442 23 777777777777764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.06  E-value=5.6e-06  Score=62.68  Aligned_cols=61  Identities=25%  Similarity=0.379  Sum_probs=43.6

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.+++++|.+.+. +  .+..+++|++|++++|.+.+..|..++++++|++|++++|.+++
T Consensus       265 ~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          265 TKLKMLNVGSNQISDI-S--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             TTCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred             CCcCEEEccCCccCCC-h--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence            3566666666666542 2  36677778888888888877777777888888888888887765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.03  E-value=2.4e-06  Score=64.77  Aligned_cols=61  Identities=20%  Similarity=0.228  Sum_probs=51.2

Q ss_pred             CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ..+++.+++++|.+.+..+. .+..+++|++|++++|.+.+..|  +..+++|++|++++|.++
T Consensus       286 l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          286 LSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCCCCEEECcCCcCCCcChh-HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            35799999999999876554 58899999999999999997666  899999999999999985

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.03  E-value=1.1e-05  Score=60.47  Aligned_cols=58  Identities=26%  Similarity=0.387  Sum_probs=28.0

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+++.|++++|.+.+. +  ++..+++|++|++++|.+.+ +| .+.++++|++|++++|+++
T Consensus        68 ~~L~~L~L~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~  125 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDI-K--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS  125 (291)
T ss_dssp             TTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC
T ss_pred             CCCCEEEccCCccCCC-c--ccccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCC
Confidence            3455666666655532 1  14455555555555555543 22 2444445555555444443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.01  E-value=9.4e-06  Score=60.75  Aligned_cols=40  Identities=30%  Similarity=0.500  Sum_probs=20.6

Q ss_pred             CCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           97 FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        97 l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +..+++|+.|++++|.+.+..|  +..+++|++|++++|.++
T Consensus       152 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            4445555555555555554322  555555555555555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.99  E-value=1.9e-06  Score=64.95  Aligned_cols=58  Identities=31%  Similarity=0.348  Sum_probs=32.4

Q ss_pred             CeeEEecCCCCCccc-cCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCC
Q 043483           77 RITDIGLAESKIKGE-LGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRN  135 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~-l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N  135 (140)
                      +++.|+++++.+.+. ++. .+..+++|++|++++|.+.+.+|..++++++|++|++++|
T Consensus        94 ~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B           94 RVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             CCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             CCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence            455555555555433 332 3455566666666666665555555666666666666655

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.98  E-value=1.9e-05  Score=62.80  Aligned_cols=56  Identities=25%  Similarity=0.371  Sum_probs=39.2

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .++.+++++|.+.+.    ++..+++|++|++++|++++ +|  ++.+++|++|++++|+++|
T Consensus       192 ~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          192 LLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             TCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred             CCCEEECcCCcCCee----ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence            455555666555532    46777778888888888876 66  6777888888888887765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.98  E-value=1.4e-05  Score=66.28  Aligned_cols=58  Identities=19%  Similarity=0.261  Sum_probs=46.7

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|+|++|.|. .+|.    .+++|++|++++|.++ .+|..+.++++|+.|+|++|.++|
T Consensus       241 ~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          241 SELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             TTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred             CcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence            35666666666665 2332    5678999999999999 889999999999999999999876

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.98  E-value=1.3e-05  Score=59.22  Aligned_cols=57  Identities=28%  Similarity=0.508  Sum_probs=33.8

Q ss_pred             eeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           78 ITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        78 v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      ++.|+|++|.+.+ ++  .+..+++|+.|++++|++++ +| .+..+++|++|++++|++++
T Consensus       108 L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A          108 LSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred             ccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcc
Confidence            4444444444443 11  35666677777777777764 33 46667777777777776654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.97  E-value=2.9e-07  Score=65.09  Aligned_cols=60  Identities=20%  Similarity=0.271  Sum_probs=44.7

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|++++|.+.+ +|  .+..+++|++|++++|.+. .+|..+..+++|++|++++|++++
T Consensus        48 ~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~  107 (198)
T 1ds9_A           48 KACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS  107 (198)
T ss_dssp             TTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC
T ss_pred             CCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc
Confidence            467888888888775 44  5677778888888888877 577766777777777777777664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.96  E-value=2.2e-05  Score=62.43  Aligned_cols=56  Identities=23%  Similarity=0.395  Sum_probs=26.9

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      +++.|++++|.+.+.    +++.+++|++|++++|.+.+ +|  ++++++|++|++++|++++
T Consensus        86 ~L~~L~Ls~N~l~~~----~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~  141 (457)
T 3bz5_A           86 NLTYLACDSNKLTNL----DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE  141 (457)
T ss_dssp             TCSEEECCSSCCSCC----CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC
T ss_pred             CCCEEECcCCCCcee----ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce
Confidence            344444444444431    24455555555555555554 33  4555555555555555443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.94  E-value=1.3e-05  Score=66.25  Aligned_cols=40  Identities=30%  Similarity=0.500  Sum_probs=21.0

Q ss_pred             CCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           97 FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        97 l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|+++
T Consensus       149 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          149 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            4445555555555555554333  555555555555555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.93  E-value=2.9e-07  Score=73.30  Aligned_cols=62  Identities=11%  Similarity=0.012  Sum_probs=29.1

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCC-------------CEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNL-------------KYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L-------------~~L~ls~N~lsG  139 (140)
                      .+++.++++++.+ |.+|. .++++++|++|++++|.+.|.+|+.++++++|             ++|++++|.++|
T Consensus        11 ~~L~~L~l~~n~l-~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~   85 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS   85 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred             ccchhhhcccCch-hhCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence            5678888888888 77876 68888888888888888888888888776643             666666666554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.93  E-value=1.1e-05  Score=60.67  Aligned_cols=62  Identities=23%  Similarity=0.202  Sum_probs=53.0

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccc-cchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGS-ILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~-iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.++++++.+.+..+.  +..+++|++|++++|.+.+. +|..+.++++|++|++++|.+++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~  132 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD  132 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH
T ss_pred             ccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH
Confidence            4678888888888766543  67899999999999999977 89899999999999999998864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.91  E-value=7.8e-07  Score=62.84  Aligned_cols=61  Identities=23%  Similarity=0.383  Sum_probs=51.6

Q ss_pred             CCeeEEecCCCCCccccCCc-----cCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRL-----NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~-----~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ..++.++++.+.+.|.+|.+     .+..+++|++|++++|.+.+ +| .+.++++|++|++++|.++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~   83 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK   83 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc
Confidence            46677777778888776642     37889999999999999997 88 8999999999999999876

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.88  E-value=2.1e-05  Score=59.17  Aligned_cols=56  Identities=27%  Similarity=0.427  Sum_probs=23.5

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL  137 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~l  137 (140)
                      +++.|++++|.+.+. +  ++..+++|++|++++|.+.+ +|+ +.++++|+.|++++|.+
T Consensus       130 ~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          130 NLQVLYLDLNQITNI-S--PLAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             TCCEEECCSSCCCCC-G--GGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCccCcC-c--cccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCcc
Confidence            455555555555432 1  13444444444444444442 222 34444444444444433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.88  E-value=2.3e-05  Score=58.98  Aligned_cols=59  Identities=25%  Similarity=0.438  Sum_probs=39.9

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|++++|.+.+ ++  ++..+++|++|++++|.+.+. |+ +.++++|++|++++|.+++
T Consensus       107 ~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~  165 (308)
T 1h6u_A          107 QSIKTLDLTSTQITD-VT--PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD  165 (308)
T ss_dssp             TTCCEEECTTSCCCC-CG--GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC
T ss_pred             CCCCEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC
Confidence            356777777777764 22  367777777777777777753 33 6777777777777777654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.86  E-value=2.7e-05  Score=61.61  Aligned_cols=59  Identities=19%  Similarity=0.314  Sum_probs=40.8

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|+|+++.+.+. +  ++..+++|++|++++|.+.+..|  ++++++|++|++++|.+++
T Consensus        68 ~~L~~L~Ls~n~l~~~-~--~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~  126 (466)
T 1o6v_A           68 NNLTQINFSNNQLTDI-T--PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD  126 (466)
T ss_dssp             TTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             cCCCEEECCCCccCCc-h--hhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC
Confidence            4677888888877743 2  26777777777777777775433  6777777777777776654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.82  E-value=9.9e-06  Score=64.42  Aligned_cols=40  Identities=33%  Similarity=0.401  Sum_probs=17.6

Q ss_pred             CCCCcEEEccCCcccc--ccchhhcCC-------------CCCCEEeCcCCcCcC
Q 043483          100 FPNLQYLDLSNNNLSG--SILSQIGSL-------------SNLKYLDLDRNNLSG  139 (140)
Q Consensus       100 l~~L~~L~l~~n~l~G--~iP~~~~~l-------------~~L~~L~ls~N~lsG  139 (140)
                      +++|++|++++|.+.|  .+|..++.+             ++|++||+++|+++|
T Consensus       356 l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          356 PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             CTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred             hhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence            5667777777777777  677766666             667777777777765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.82  E-value=4e-06  Score=69.53  Aligned_cols=35  Identities=31%  Similarity=0.360  Sum_probs=19.4

Q ss_pred             CCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483          100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus       100 l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +++|++|++++|.++ .+|.   .+++|++|++++|.++
T Consensus        80 l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           80 PPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT  114 (622)
T ss_dssp             CTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred             CCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence            455666666666655 3444   4455555555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.79  E-value=1e-05  Score=62.34  Aligned_cols=61  Identities=21%  Similarity=0.344  Sum_probs=28.1

Q ss_pred             CeeEEecCCCCCc----cccCCccCCCCCCCcEEEccCCccccc----cchhh--cCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIK----GELGRLNFSCFPNLQYLDLSNNNLSGS----ILSQI--GSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~----g~l~~~~l~~l~~L~~L~l~~n~l~G~----iP~~~--~~l~~L~~L~ls~N~ls  138 (140)
                      +++.|+|++|.++    +.++. .+..+++|++|++++|.+.+.    +|..+  +++++|++|+|++|.++
T Consensus       217 ~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          217 ELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             CccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence            3444444444443    22222 244455555555555555443    34444  22555555555555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.78  E-value=3.4e-05  Score=61.03  Aligned_cols=18  Identities=28%  Similarity=0.643  Sum_probs=7.9

Q ss_pred             hcCCCCCCEEeCcCCcCc
Q 043483          121 IGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus       121 ~~~l~~L~~L~ls~N~ls  138 (140)
                      +.++++|++|++++|+++
T Consensus       349 l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          349 LANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             GTTCTTCCEEECCSSCCC
T ss_pred             hccCCCCCEEeCCCCccC
Confidence            344444444444444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.77  E-value=8.9e-06  Score=62.74  Aligned_cols=63  Identities=22%  Similarity=0.361  Sum_probs=37.9

Q ss_pred             CCeeEEecCCCCCccc----cCCccC--CCCCCCcEEEccCCcccc----ccchhh-cCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGE----LGRLNF--SCFPNLQYLDLSNNNLSG----SILSQI-GSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~----l~~~~l--~~l~~L~~L~l~~n~l~G----~iP~~~-~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|+|++|.+.+.    ++. .+  +.+++|++|++++|.+.+    .+|..+ .++++|++|++++|.+++
T Consensus       244 ~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          244 PNLRELGLNDCLLSARGAAAVVD-AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHH-HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CCcCEEECCCCCCchhhHHHHHH-HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            3566666666666543    121 22  346666777777777666    466655 556667777777766664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.76  E-value=9.2e-06  Score=62.34  Aligned_cols=62  Identities=23%  Similarity=0.284  Sum_probs=45.6

Q ss_pred             CeeEEecCCCCCccccCCccCCCC-----CCCcEEEccCCccccccchhhc----CC-CCCCEEeCcCCcCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCF-----PNLQYLDLSNNNLSGSILSQIG----SL-SNLKYLDLDRNNLSG  139 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l-----~~L~~L~l~~n~l~G~iP~~~~----~l-~~L~~L~ls~N~lsG  139 (140)
                      +++.|+|++|.+.+..+. .+..+     ++|++|++++|.+++..+..+.    .+ ++|++|++++|.+++
T Consensus        52 ~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  123 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSD-ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS  123 (362)
T ss_dssp             TCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             ceeEEECcCCCCCHHHHH-HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence            788888888888754332 34443     8888899998888877776444    34 788999998888764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.75  E-value=2.5e-05  Score=64.17  Aligned_cols=35  Identities=26%  Similarity=0.280  Sum_probs=29.5

Q ss_pred             cEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483          104 QYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus       104 ~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      +.|++++|.++ .||..+.++++|++|+|++|.++|
T Consensus       210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence            78888888887 588888888999999999998875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.75  E-value=3.3e-05  Score=63.82  Aligned_cols=59  Identities=24%  Similarity=0.377  Sum_probs=49.2

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|+|++|.+.+..   ++..+++|+.|+|++|.+.+ +| .+..+++|+.|+|++|.+++
T Consensus       153 ~~L~~L~Ls~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          153 TKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             TTCSEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEEC
T ss_pred             CCCCEEECcCCcCCCch---hhccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcC
Confidence            46777777777777543   38899999999999999997 44 59999999999999998875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.74  E-value=1.7e-05  Score=59.41  Aligned_cols=42  Identities=38%  Similarity=0.490  Sum_probs=38.2

Q ss_pred             CCCCCCcEEEccCCcccc--ccchhhcCCCCCCEEeCcCCcCcC
Q 043483           98 SCFPNLQYLDLSNNNLSG--SILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        98 ~~l~~L~~L~l~~n~l~G--~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .++++|+.|+|++|.+.+  .+|..+..+++|+.|+|++|++++
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~  210 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  210 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence            358899999999999998  777888899999999999999986

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.71  E-value=3.2e-05  Score=59.11  Aligned_cols=65  Identities=22%  Similarity=0.246  Sum_probs=54.5

Q ss_pred             CCCeeEEecCCCCCccccCCccCCCCCCCcE-EEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           75 EGRITDIGLAESKIKGELGRLNFSCFPNLQY-LDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~-L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      -.+++.|+|++|.+.+.++...|.++++++. +.+..|++....|..+.++++|++|++++|++++
T Consensus        53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~  118 (350)
T 4ay9_X           53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  118 (350)
T ss_dssp             CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred             CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccccc
Confidence            3579999999999987777656888988775 6677899997667789999999999999998864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.67  E-value=1e-05  Score=62.13  Aligned_cols=63  Identities=19%  Similarity=0.269  Sum_probs=48.3

Q ss_pred             CCeeEEecCCCCCccccCCcc----CCCC-CCCcEEEccCCccccccchhhc----C-CCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLN----FSCF-PNLQYLDLSNNNLSGSILSQIG----S-LSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~----l~~l-~~L~~L~l~~n~l~G~iP~~~~----~-l~~L~~L~ls~N~lsG  139 (140)
                      ..++.|+|++|.+.+..+. .    +..+ ++|++|++++|.+++..+..+.    . .++|++|++++|.+++
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSD-ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             CCccEEECcCCcCChHHHH-HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence            6799999999998864332 2    3344 7899999999999877665543    3 3699999999998874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.47  E-value=2e-05  Score=61.68  Aligned_cols=63  Identities=19%  Similarity=0.241  Sum_probs=43.9

Q ss_pred             CCeeEEecCCCCCccccCCccCC-----CCCCCcEEEccCCcccc----ccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFS-----CFPNLQYLDLSNNNLSG----SILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~-----~l~~L~~L~l~~n~l~G----~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      ..++.|++++|.+.+..+. .+.     ..++|++|++++|.+++    .+|..+.++++|++|++++|++++
T Consensus       341 ~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          341 RFLLELQISNNRLEDAGVR-ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             SSCCEEECCSSBCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CCccEEEccCCccccccHH-HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            3566666666666532111 121     25688888888888886    788888888889999998888764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.24  E-value=9.3e-05  Score=57.85  Aligned_cols=62  Identities=29%  Similarity=0.410  Sum_probs=44.7

Q ss_pred             CeeEEecCCCCCcc----ccCCccCCCCCCCcEEEccCCccccccchhhc-----CCCCCCEEeCcCCcCcC
Q 043483           77 RITDIGLAESKIKG----ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIG-----SLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        77 ~v~~L~L~~~~l~g----~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~-----~l~~L~~L~ls~N~lsG  139 (140)
                      +++.|+|++|.+..    .++. .+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  156 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA  156 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             ceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence            68888888888773    3333 477888888888888888765554433     25678888888888764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.20  E-value=0.00092  Score=44.42  Aligned_cols=56  Identities=18%  Similarity=0.157  Sum_probs=40.4

Q ss_pred             EEecCCCCCc-cccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           80 DIGLAESKIK-GELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        80 ~L~L~~~~l~-g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .++.++++|+ ..+|.   .--++|+.|+|++|+|+..-+..|..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~---~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT---AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCS---CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCC---CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5566677765 23332   22246899999999999543445788999999999999764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.16  E-value=0.00012  Score=59.05  Aligned_cols=63  Identities=24%  Similarity=0.188  Sum_probs=48.3

Q ss_pred             CCeeEEecCCCCCccc-cCCccCCCCCCCcEEEccCCccccc-cchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGE-LGRLNFSCFPNLQYLDLSNNNLSGS-ILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~-l~~~~l~~l~~L~~L~l~~n~l~G~-iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|+++++++++. ++. .+..+++|++|++++|.+++. ++..+.++++|++|++++|++++
T Consensus       463 ~~L~~L~L~~n~l~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          463 PNVRWMLLGYVGESDEGLME-FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             TTCCEEEECSCCSSHHHHHH-HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             ccceEeeccCCCCCHHHHHH-HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            4588888888887752 222 357789999999999998765 44445789999999999999875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.00  E-value=0.00026  Score=54.93  Aligned_cols=42  Identities=24%  Similarity=0.246  Sum_probs=23.6

Q ss_pred             CCCCCCCcEEEccCCcccc----ccchhhcCCCCCCEEeCcCCcCc
Q 043483           97 FSCFPNLQYLDLSNNNLSG----SILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        97 l~~l~~L~~L~l~~n~l~G----~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +...+.|+.|+|++|.++.    .++..+...++|++|||++|.++
T Consensus       207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            3444566666666666653    23334445566666666666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.95  E-value=0.00029  Score=54.67  Aligned_cols=61  Identities=18%  Similarity=0.264  Sum_probs=34.4

Q ss_pred             CeeEEecCCCCCccc----cCCccCCCCCCCcEEEccCCcccc----ccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGE----LGRLNFSCFPNLQYLDLSNNNLSG----SILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~----l~~~~l~~l~~L~~L~l~~n~l~G----~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .++.|+|++|.+...    ++. .+...+.|++|+|++|.+..    .++..+...++|++|+|++|.++
T Consensus       156 ~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          156 QITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             CCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             ccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            455555555555321    111 13455667777777777653    23445566667777777777664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.48  E-value=0.0013  Score=45.99  Aligned_cols=62  Identities=18%  Similarity=0.293  Sum_probs=30.4

Q ss_pred             CCeeEEecCCCCCccc----cCCccCCCCCCCcEEEccCCccccc----cchhhcCCCCCCEEeC--cCCcCc
Q 043483           76 GRITDIGLAESKIKGE----LGRLNFSCFPNLQYLDLSNNNLSGS----ILSQIGSLSNLKYLDL--DRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~----l~~~~l~~l~~L~~L~l~~n~l~G~----iP~~~~~l~~L~~L~l--s~N~ls  138 (140)
                      ..++.|+|++|.+...    +.. .+...+.|++|+|++|.+...    +...+...+.|++|+|  ++|.++
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~-~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             CCcCEEECcCCCCChHHHHHHHH-HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence            4566666666665421    111 123334555566666555532    3334445555555655  455543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.36  E-value=0.00073  Score=54.39  Aligned_cols=38  Identities=8%  Similarity=0.119  Sum_probs=16.8

Q ss_pred             CCCCcEEEccCCccc----cccchhhcCCCCCCEEeCcCCcC
Q 043483          100 FPNLQYLDLSNNNLS----GSILSQIGSLSNLKYLDLDRNNL  137 (140)
Q Consensus       100 l~~L~~L~l~~n~l~----G~iP~~~~~l~~L~~L~ls~N~l  137 (140)
                      +++|++|++++|.++    +.++..+.++++|++|++++|.+
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~  232 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI  232 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence            344444444444443    23333334445555555544443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.15  E-value=0.0019  Score=45.09  Aligned_cols=62  Identities=13%  Similarity=0.183  Sum_probs=48.4

Q ss_pred             CCeeEEecCCCCCccc----cCCccCCCCCCCcEEEc--cCCccccc----cchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGE----LGRLNFSCFPNLQYLDL--SNNNLSGS----ILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~----l~~~~l~~l~~L~~L~l--~~n~l~G~----iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ..++.|+|++|.+...    +.. .+...+.|++|++  ++|.+...    +...+...+.|++|++++|.+.
T Consensus        93 ~~L~~L~L~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           93 NTLKSLNVESNFISGSGILALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCcCEEECcCCcCCHHHHHHHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            4799999999998742    122 3667788999999  88999854    4455667799999999999874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.12  E-value=0.0096  Score=44.74  Aligned_cols=54  Identities=17%  Similarity=0.289  Sum_probs=26.4

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccc-hhhcCCCCCC-EEeCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSIL-SQIGSLSNLK-YLDLD  133 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP-~~~~~l~~L~-~L~ls  133 (140)
                      .++.++|++|++. .+|...|.++++|+.+++++| +. .|+ ..|.++++|+ .++++
T Consensus       227 ~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~  282 (329)
T 3sb4_A          227 NLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELP  282 (329)
T ss_dssp             TCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEEC
T ss_pred             CCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEc
Confidence            4556666655554 344434555555555555554 33 222 2344455554 44444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=95.98  E-value=0.0012  Score=53.14  Aligned_cols=38  Identities=11%  Similarity=0.166  Sum_probs=16.4

Q ss_pred             CCCCcEEEccCCccccccchhh-cCCCCCCEEeCcCCcC
Q 043483          100 FPNLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNL  137 (140)
Q Consensus       100 l~~L~~L~l~~n~l~G~iP~~~-~~l~~L~~L~ls~N~l  137 (140)
                      +++|++|++++|.+++..+..+ .++++|++|++++|.+
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            3444444444444443333322 3344444444444443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.88  E-value=0.0012  Score=51.13  Aligned_cols=38  Identities=24%  Similarity=0.468  Sum_probs=16.6

Q ss_pred             CCCCcEEEccCCccccccchhhc---CCCCCCEEeCcCCcC
Q 043483          100 FPNLQYLDLSNNNLSGSILSQIG---SLSNLKYLDLDRNNL  137 (140)
Q Consensus       100 l~~L~~L~l~~n~l~G~iP~~~~---~l~~L~~L~ls~N~l  137 (140)
                      +++|++|+|.+|.+.+..+..+.   .+++|++|+|+.|.+
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence            44555555554444433332221   244444444444444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=95.68  E-value=0.0018  Score=52.06  Aligned_cols=35  Identities=20%  Similarity=0.243  Sum_probs=17.2

Q ss_pred             CCeeEEecCCCCCccccCCccCC-CCCCCcEEEccCC
Q 043483           76 GRITDIGLAESKIKGELGRLNFS-CFPNLQYLDLSNN  111 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~-~l~~L~~L~l~~n  111 (140)
                      .+++.|+|+++.+.+.... .+. .+++|++|+++++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEESC
T ss_pred             CCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCCCc
Confidence            4567777777666543211 121 3444444444444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=95.67  E-value=0.013  Score=44.05  Aligned_cols=60  Identities=20%  Similarity=0.326  Sum_probs=39.6

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCc-EEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQ-YLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~-~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+++.|+|+++ +. .++...|.++++|+ .+++++ .+.-.-+..|.++++|+.++++.|.++
T Consensus       250 ~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          250 KYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             TTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred             CCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence            35777777765 44 45555677777787 777776 555333356777778888877766653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.84  E-value=0.027  Score=37.18  Aligned_cols=38  Identities=18%  Similarity=0.214  Sum_probs=32.3

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLS  114 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~  114 (140)
                      ..++.|+|++|.|+ .++...|..+++|+.|+|.+|.+.
T Consensus        31 ~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           31 VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            36899999999998 465546889999999999999875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=94.01  E-value=0.036  Score=38.80  Aligned_cols=59  Identities=14%  Similarity=0.196  Sum_probs=36.3

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCc-cccccchhhcCC----CCCCEEeCcCC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNN-LSGSILSQIGSL----SNLKYLDLDRN  135 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~-l~G~iP~~~~~l----~~L~~L~ls~N  135 (140)
                      -.+++||+++..++.. +-..+..+++|+.|+|+++. ++..-=..+..+    ++|++|+|+++
T Consensus        61 ~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C  124 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC  124 (176)
T ss_dssp             CCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred             ceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence            4689999998887532 11136677788888887764 553322334443    35777777664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=92.91  E-value=0.036  Score=42.79  Aligned_cols=40  Identities=28%  Similarity=0.605  Sum_probs=27.2

Q ss_pred             CCCCCcEEEccCCccccc----cchhhcCCCCCCEEeCcCCcCc
Q 043483           99 CFPNLQYLDLSNNNLSGS----ILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        99 ~l~~L~~L~l~~n~l~G~----iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++
T Consensus       277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            466777888877777653    3444455677788888777764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.18  E-value=0.21  Score=35.42  Aligned_cols=60  Identities=18%  Similarity=0.245  Sum_probs=34.2

Q ss_pred             CCCeeEEecCCCCCccccCCcc----CCCCCCCcEEEccCCccccc----cchhhcCCCCCCEEeCcCC
Q 043483           75 EGRITDIGLAESKIKGELGRLN----FSCFPNLQYLDLSNNNLSGS----ILSQIGSLSNLKYLDLDRN  135 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g~l~~~~----l~~l~~L~~L~l~~n~l~G~----iP~~~~~l~~L~~L~ls~N  135 (140)
                      ...++.|+|++|.+...- ...    +..=+.|++|+|++|.+...    |-..+..-+.|++|+|++|
T Consensus        69 N~~L~~L~L~~n~igd~g-a~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSE-ARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             CSCCCEEECTTSCCBHHH-HTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCCcCEEEccCCCCChHH-HHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            346777777777765211 101    22335677777777777632    2233444556777777654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=90.16  E-value=0.74  Score=35.71  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=20.4

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLS  114 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~  114 (140)
                      .++.+.+.. .+. .++.-.|.++++|+.+++++|.+.
T Consensus       158 ~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~  193 (401)
T 4fdw_A          158 TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKIT  193 (401)
T ss_dssp             CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCS
T ss_pred             CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcce
Confidence            355555543 333 334335677777777777766555

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=88.00  E-value=0.91  Score=35.22  Aligned_cols=38  Identities=13%  Similarity=0.212  Sum_probs=18.4

Q ss_pred             cCCCCCCCcEEEccCCccc----cccc-hhhcCCCCCCEEeCc
Q 043483           96 NFSCFPNLQYLDLSNNNLS----GSIL-SQIGSLSNLKYLDLD  133 (140)
Q Consensus        96 ~l~~l~~L~~L~l~~n~l~----G~iP-~~~~~l~~L~~L~ls  133 (140)
                      .|.++++|+.+++.+|.+.    ..|+ ..|.++++|+.+++.
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence            4555566666665555443    0122 234455555555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=85.42  E-value=0.86  Score=32.23  Aligned_cols=39  Identities=21%  Similarity=0.409  Sum_probs=18.8

Q ss_pred             CCCCcEEEccCCcccc----ccchhhcCCCCCCEEeCcCCcCc
Q 043483          100 FPNLQYLDLSNNNLSG----SILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus       100 l~~L~~L~l~~n~l~G----~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      =+.|+.|+|++|.+..    .|-..+..-+.|++|+|++|.++
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            3455555555555542    12222333445555555555553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=85.33  E-value=0.73  Score=32.02  Aligned_cols=36  Identities=11%  Similarity=0.192  Sum_probs=29.3

Q ss_pred             CCCcEEEccCCccccccchhhcCCCCCCEEeCcCCc
Q 043483          101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNN  136 (140)
Q Consensus       101 ~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~  136 (140)
                      .+|+.||++++.++..=-..+.++++|+.|+|+++.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            369999999999875433457899999999999874

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=85.25  E-value=1.1  Score=33.79  Aligned_cols=36  Identities=17%  Similarity=0.166  Sum_probs=15.6

Q ss_pred             CCCCCCCcEEEccCCccccccc-hhhcCCCCCCEEeCc
Q 043483           97 FSCFPNLQYLDLSNNNLSGSIL-SQIGSLSNLKYLDLD  133 (140)
Q Consensus        97 l~~l~~L~~L~l~~n~l~G~iP-~~~~~l~~L~~L~ls  133 (140)
                      |..+++|+.+.+.++.+. .|+ ..|.++++|+.+++.
T Consensus       282 F~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          282 CSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECC
T ss_pred             cccccccccccccccccc-eehhhhhcCCCCCCEEEcC
Confidence            444444554444444443 222 234444444444443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=84.96  E-value=1.1  Score=34.23  Aligned_cols=37  Identities=22%  Similarity=0.314  Sum_probs=20.4

Q ss_pred             cCCCCCCCcEEEccCCccccccc-hhhcCCCCCCEEeCcC
Q 043483           96 NFSCFPNLQYLDLSNNNLSGSIL-SQIGSLSNLKYLDLDR  134 (140)
Q Consensus        96 ~l~~l~~L~~L~l~~n~l~G~iP-~~~~~l~~L~~L~ls~  134 (140)
                      .|.++++|+.+++..| +. .|+ .+|.++++|+.++++.
T Consensus       338 aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          338 SFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             TTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEG
T ss_pred             hccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECC
Confidence            4556666666666544 33 233 2456666666666644

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=83.40  E-value=2.5  Score=32.14  Aligned_cols=43  Identities=12%  Similarity=0.230  Sum_probs=27.7

Q ss_pred             cCCccCCCCCCCcEEEccCCccccccc-hhhcCCCCCCEEeCcCCc
Q 043483           92 LGRLNFSCFPNLQYLDLSNNNLSGSIL-SQIGSLSNLKYLDLDRNN  136 (140)
Q Consensus        92 l~~~~l~~l~~L~~L~l~~n~l~G~iP-~~~~~l~~L~~L~ls~N~  136 (140)
                      ++...|.++++|+.+.+..+ ++ .|+ .+|.++++|+.+++..|.
T Consensus       325 I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          325 ILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             ECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred             ehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence            34445777777777777644 44 343 357778888888776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	140
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.8 bits (112), Expect = 5e-08
 Identities = 18/92 (19%), Positives = 32/92 (34%)

Query: 49  NSGWWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDL 108
            +    +    + S +      +  +        +  +K              NL  LDL
Sbjct: 192 PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL 251

Query: 109 SNNNLSGSILSQIGSLSNLKYLDLDRNNLSGE 140
            NN + G++   +  L  L  L++  NNL GE
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.7 bits (109), Expect = 1e-07
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 2/86 (2%)

Query: 52  WWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNN 111
               +  H   +   +          +  + L  ++I G L +   +    L  L++S N
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFN 278

Query: 112 NLSGSILSQIGSLSNLKYLDLDRNNL 137
           NL G I  Q G+L          N  
Sbjct: 279 NLCGEI-PQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 34.7 bits (78), Expect = 0.002
 Identities = 25/112 (22%), Positives = 38/112 (33%), Gaps = 43/112 (38%)

Query: 40  SEIERQALLN-----------SGWWKDRIPHNTSDHCG--WVGITCDYEGRITDIGLAES 86
           +  ++QALL            S W        T+D C   W+G+ CD + +         
Sbjct: 4   NPQDKQALLQIKKDLGNPTTLSSWL------PTTDCCNRTWLGVLCDTDTQTY------- 50

Query: 87  KIKGELGRLNFSCFPNLQYLDLSNNNLSG--SILSQIGSLSNLKYLDLDRNN 136
                           +  LDLS  NL     I S + +L  L +L +   N
Sbjct: 51  ---------------RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 7e-08
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 52  WWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNN 111
                     +++             +T + L  + I         S    LQ L  +NN
Sbjct: 283 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANN 339

Query: 112 NLSGSILSQIGSLSNLKYLDLDRNNLSG 139
            +S   +S + +L+N+ +L    N +S 
Sbjct: 340 KVSD--VSSLANLTNINWLSAGHNQISD 365

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 2e-05
 Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRN 135
           + +   N+ +L   +N +S      + +L+ +  L L+  
Sbjct: 346 SLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 78  ITDIGLAESKIKGELGRLNF------SCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLD 131
            TD  LAE K+K  LG+ N       +    +  L      +    +  +  L+NL  ++
Sbjct: 16  FTDTALAE-KMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 72

Query: 132 LDRNNLSG 139
              N L+ 
Sbjct: 73  FSNNQLTD 80

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.7 bits (101), Expect = 2e-06
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 5/94 (5%)

Query: 52  WWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNN 111
                   +++            E  + D  L+       +   +      LQ L L  N
Sbjct: 224 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 283

Query: 112 NLSGSILSQIGS-----LSNLKYLDLDRNNLSGE 140
            +    +  + +     + +L +L+L+ N  S E
Sbjct: 284 EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 317

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-05
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 100 FPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNN 136
             +   L LS N L    L+ +   + L  L+LDR  
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 0.002
 Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 1/41 (2%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137
            +   NL  L L  N+L  +I         L +  L  N  
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 3e-05
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDL 132
            +  PNL  + L NN +S   +S + + SNL  + L
Sbjct: 191 LASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 9e-04
 Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 2/88 (2%)

Query: 52  WWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNN 111
                                     +T++                +    L  L   +N
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 112 NLSGSILSQIGSLSNLKYLDLDRNNLSG 139
            +S   +S + SL NL  + L  N +S 
Sbjct: 184 KISD--ISPLASLPNLIEVHLKNNQISD 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 3e-05
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 96  NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDL 132
             +    LQ L LS N++S   L  +  L NL  L+L
Sbjct: 173 PLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 207

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 4e-05
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 104 QYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           + L L++ +L+  +L  +  L  + +LDL  N L  
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA 34

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 1e-04
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 96  NFSCFPNLQYLDLSNNNL-SGSILSQIGSLSNLKYLDLDRNNLSGE 140
             +  P LQ L L NN L   + +  + S   L  L+L  N+L  E
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 8e-05
 Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 4/48 (8%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGS----LSNLKYLDLDRNNLSGE 140
                  Q + L +  L+ +    I S       L  L+L  N L   
Sbjct: 23  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV 70

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 1e-04
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 102 NLQYLDLSNNNLSGSILSQI-GSLSNLKYLDLDRNNLSGE 140
           ++Q LD+    LS +  +++   L   + + LD   L+  
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA 42

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 3e-04
 Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 4/93 (4%)

Query: 52  WWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNN 111
                     S     +                E     EL +        L+ L L++ 
Sbjct: 320 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 379

Query: 112 NLSGSILSQIGS----LSNLKYLDLDRNNLSGE 140
           ++S S  S + +      +L+ LDL  N L   
Sbjct: 380 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 4e-04
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGS-----LSNLKYLDLDRNNLSGE 140
                +L+ LDLSNN L  + + Q+          L+ L L     S E
Sbjct: 393 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 441

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 8e-05
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 98  SCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           +  P L+ L  S N+L+           NLK L ++ N L  
Sbjct: 301 ALPPRLERLIASFNHLA----EVPELPQNLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 2e-04
 Identities = 16/87 (18%), Positives = 24/87 (27%), Gaps = 4/87 (4%)

Query: 52  WWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNN 111
           +  D      S     V              L          R      P+L+ L++SNN
Sbjct: 235 YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN 294

Query: 112 NLSGSILSQIGSLSNLKYLDLDRNNLS 138
            L             L+ L    N+L+
Sbjct: 295 KLI----ELPALPPRLERLIASFNHLA 317

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 9e-05
 Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 2/87 (2%)

Query: 52  WWKDRIPHNTSDHCGWVGITCDYEGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNN 111
            ++  I     +    +        ++ ++ L+++    EL    F        LD+S  
Sbjct: 152 SFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 211

Query: 112 NLSGSILSQIGSLSNLKYLDLDRNNLS 138
            +       + +L  L+       NL 
Sbjct: 212 RIHSLPSYGLENLKKLRARST--YNLK 236

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.1 bits (87), Expect = 1e-04
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 101 PNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           P+   LDL NN ++        +L NL  L L  N +S 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.2 bits (82), Expect = 7e-04
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 91  ELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG 139
           E+   +F    NL  L L NN +S         L  L+ L L +N L  
Sbjct: 45  EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 93

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.0 bits (84), Expect = 3e-04
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 97  FSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYL 130
            +    L+ LD+S+N +S   +S +  L+NL+ L
Sbjct: 168 LANLTTLERLDISSNKVSD--ISVLAKLTNLESL 199

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 4e-04
 Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 94  RLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNL 137
              ++     + LDL    +   I +   +L     +D   N +
Sbjct: 11  AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	140
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.84
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.06
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.84
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.83
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.69
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.65
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.6
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.37
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.3
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.29
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.28
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.28
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.27
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.23
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.11
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.05
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.98
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.91
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.9
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.8
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.6
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.44
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.43
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.43
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.34
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.07
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.0
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	96.93
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.73
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	96.64
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.64
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.11
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	95.3
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.53
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	93.89
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	89.38
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	84.78

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.84  E-value=1.1e-21  Score=147.23  Aligned_cols=105  Identities=27%  Similarity=0.441  Sum_probs=92.1

Q ss_pred             ccchhhhhhHHHHHHHhcCCCCCCCCCCCCCCCC--CccccccCCC---CCeeEEecCCCCCcc--ccCCccCCCCCCCc
Q 043483           32 NISIHVAASEIERQALLNSGWWKDRIPHNTSDHC--GWVGITCDYE---GRITDIGLAESKIKG--ELGRLNFSCFPNLQ  104 (140)
Q Consensus        32 ~~~~~~~~l~~~~~~l~~~~~~~~~~w~~~~~~C--~w~gv~C~~~---~~v~~L~L~~~~l~g--~l~~~~l~~l~~L~  104 (140)
                      +.++|..++.++|+++.++.  .+++|..+.|||  .|.||+|+..   +||++|+|+++++.|  .+|+ .+++|++|+
T Consensus         3 c~~~e~~aLl~~k~~~~~~~--~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~-~l~~L~~L~   79 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SLANLPYLN   79 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG--GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GGGGCTTCS
T ss_pred             CCHHHHHHHHHHHHHCCCCC--cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCCh-HHhcCcccc
Confidence            35678899999999987653  477898788999  4999999853   479999999999998  4666 799999999


Q ss_pred             EEEccC-CccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483          105 YLDLSN-NNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus       105 ~L~l~~-n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      +|+|++ |++.|.||++|+++++|++|+|++|+++|
T Consensus        80 ~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~  115 (313)
T d1ogqa_          80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG  115 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE
T ss_pred             ccccccccccccccccccccccccchhhhccccccc
Confidence            999986 89999999999999999999999999875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.06  E-value=1.4e-10  Score=80.61  Aligned_cols=78  Identities=22%  Similarity=0.319  Sum_probs=48.6

Q ss_pred             CCCCCCccccccCCC----------CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEE
Q 043483           61 TSDHCGWVGITCDYE----------GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYL  130 (140)
Q Consensus        61 ~~~~C~w~gv~C~~~----------~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L  130 (140)
                      ....|.|..|.|+..          ..++.|+|++|.|++.++...|..+++|+.|++++|.+.+..+..+..+++|++|
T Consensus         4 ~~C~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L   83 (192)
T d1w8aa_           4 AMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             TTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCCEEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccccccee
Confidence            344577888888632          3678888888888765544345556666666666666655555555555555555


Q ss_pred             eCcCCcCc
Q 043483          131 DLDRNNLS  138 (140)
Q Consensus       131 ~ls~N~ls  138 (140)
                      ++++|+++
T Consensus        84 ~Ls~N~l~   91 (192)
T d1w8aa_          84 QLGENKIK   91 (192)
T ss_dssp             ECCSCCCC
T ss_pred             eecccccc
Confidence            55555543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.84  E-value=8.1e-10  Score=81.56  Aligned_cols=61  Identities=33%  Similarity=0.444  Sum_probs=33.3

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .++.+++.++.+.+.++  .+..+++|++|++++|+++|.+|+.++++++|++|||++|+|+|
T Consensus       222 ~l~~l~~~~~~l~~~~~--~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         222 NTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             CCSEEECCSSEECCBGG--GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             ccccccccccccccccc--ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccc
Confidence            34445555555544433  24555555555665555555555555555556666665555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=5.6e-09  Score=70.53  Aligned_cols=73  Identities=18%  Similarity=0.291  Sum_probs=57.2

Q ss_pred             CccccccCCC------------CCeeEEecCCCC-CccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeC
Q 043483           66 GWVGITCDYE------------GRITDIGLAESK-IKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDL  132 (140)
Q Consensus        66 ~w~gv~C~~~------------~~v~~L~L~~~~-l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~l  132 (140)
                      .+.+++|...            .++++|++.+++ +. .++...|.++++|+.|++++|+++..-|..|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            4667777531            367888887665 66 455546899999999999999999766777999999999999


Q ss_pred             cCCcCcC
Q 043483          133 DRNNLSG  139 (140)
Q Consensus       133 s~N~lsG  139 (140)
                      ++|+++.
T Consensus        88 s~N~l~~   94 (156)
T d2ifga3          88 SFNALES   94 (156)
T ss_dssp             CSSCCSC
T ss_pred             cCCCCcc
Confidence            9999863

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.72  E-value=1.4e-08  Score=74.38  Aligned_cols=78  Identities=26%  Similarity=0.310  Sum_probs=66.2

Q ss_pred             CCCCCCCccccccCC----------CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCE
Q 043483           60 NTSDHCGWVGITCDY----------EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKY  129 (140)
Q Consensus        60 ~~~~~C~w~gv~C~~----------~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~  129 (140)
                      +....|.|.+|.|..          ...++.|+|++|.++ .+++..|.++++|++|++++|.+....|..|.++++|++
T Consensus         5 p~~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~   83 (305)
T d1xkua_           5 PFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER   83 (305)
T ss_dssp             CTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CCCCEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCE
Confidence            355668899999964          246889999999998 455546899999999999999999777888999999999


Q ss_pred             EeCcCCcCc
Q 043483          130 LDLDRNNLS  138 (140)
Q Consensus       130 L~ls~N~ls  138 (140)
                      |++++|+++
T Consensus        84 L~l~~n~l~   92 (305)
T d1xkua_          84 LYLSKNQLK   92 (305)
T ss_dssp             EECCSSCCS
T ss_pred             ecccCCccC
Confidence            999999876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.69  E-value=1.4e-08  Score=70.29  Aligned_cols=62  Identities=27%  Similarity=0.413  Sum_probs=39.1

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+++.|+|++|.+.. +++..|.++++|++|+|++|++++..|..|..+++|++|+|++|.+.
T Consensus        78 ~~L~~L~Ls~N~l~~-l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          78 SHIQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TTCCEEECCSCCCCE-ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccceeeeccccccc-cCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            356666666666663 33324666777777777777776555555666777777777766654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=2.3e-08  Score=64.95  Aligned_cols=60  Identities=23%  Similarity=0.336  Sum_probs=52.0

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      ..++.|++++|.++ .+|+ .+..+++|+.|++++|.++. +| .+.++++|++|++++|+++.
T Consensus        20 ~~L~~L~ls~N~l~-~lp~-~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3          20 LLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             TTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCS
T ss_pred             CCCCEEECCCCccC-cchh-hhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCC
Confidence            47899999999998 5665 68999999999999999984 55 48999999999999999863

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=4.7e-08  Score=63.44  Aligned_cols=62  Identities=24%  Similarity=0.320  Sum_probs=51.6

Q ss_pred             CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCcccccc-chhhcCCCCCCEEeCcCCcCcC
Q 043483           75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSI-LSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~i-P~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      ..+++.+++++|.+.. ++  .+..+++|+++++++|++...- +..+.++++|++|++++|.++.
T Consensus        42 l~~L~~L~l~~N~i~~-l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          42 LRCLEVLQASDNALEN-VD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CTTCCEEECCSSCCCC-CG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             hhcccccccccccccc-cC--ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            3579999999999984 44  4899999999999999998432 2468899999999999999864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=3.6e-07  Score=65.78  Aligned_cols=61  Identities=20%  Similarity=0.169  Sum_probs=49.6

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ..+..+++++|++++..+. .+..+++|++|+|++|+++ .+|+.+..+++|+.|+|++|.+.
T Consensus       148 ~~l~~l~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         148 PKLEKLSLANNNLTELPAG-LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTCCEEECTTSCCSCCCTT-TTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccchhcccccccccccCcc-ccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            4577788888888854333 5888899999999999988 78888888899999999988764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=6.6e-07  Score=59.97  Aligned_cols=62  Identities=26%  Similarity=0.272  Sum_probs=52.5

Q ss_pred             CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ..+++.|+|++|.|+. +++..|..+++|++|+|++|+++ .+|+.+....+|+.|+|++|.|.
T Consensus        55 l~~L~~L~Ls~N~l~~-i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          55 LGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccccCcceeeccccCC-cccccccccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            4589999999999985 44447999999999999999999 67776655668999999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=6.5e-07  Score=64.77  Aligned_cols=61  Identities=26%  Similarity=0.232  Sum_probs=32.9

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +++.|++++|++.+. ++..+.++++|+++++++|++.+..|..|.++++|++||+++|+++
T Consensus       154 ~L~~L~l~~N~l~~l-~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         154 NLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             TCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             chhhcccccCccccc-chhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccc
Confidence            455566666665532 2224555555555555555555555555555555555555555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.28  E-value=5.7e-07  Score=65.48  Aligned_cols=60  Identities=23%  Similarity=0.371  Sum_probs=46.1

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .++.|+++++.+.+..+. .+.++++|++|+|++|.++ .+|+.+.++++|++|+|++|+++
T Consensus       196 ~l~~L~~s~n~l~~~~~~-~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         196 NLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             cccccccccccccccccc-cccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            456667777766643333 5778888889999888887 67888888889999999888875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=5.7e-07  Score=60.66  Aligned_cols=60  Identities=23%  Similarity=0.314  Sum_probs=48.7

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+++.|+|++|.+. .++  .+..+++|++|++++|.+....+..+..+++|++|++++|+++
T Consensus        41 ~~L~~L~Ls~N~i~-~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~  100 (162)
T d1a9na_          41 DQFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV  100 (162)
T ss_dssp             TCCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC
T ss_pred             ccCCEEECCCCCCC-ccC--CcccCcchhhhhcccccccCCCccccccccccccceecccccc
Confidence            56889999999988 444  4788999999999999998543444578999999999999875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=6.2e-07  Score=64.86  Aligned_cols=63  Identities=24%  Similarity=0.261  Sum_probs=56.9

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      ..++.+++.+|.+.+..|. .|..+++|++|++++|.+.+..|..++++++|++|++++|.+.+
T Consensus       177 ~~L~~l~l~~N~l~~i~~~-~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         177 HSLDRLLLHQNRVAHVHPH-AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccchhhhhhccccccChh-HhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            4689999999999976555 79999999999999999998888889999999999999998864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=7e-07  Score=60.20  Aligned_cols=61  Identities=28%  Similarity=0.389  Sum_probs=46.5

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccc--hhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSIL--SQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP--~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+++.|++++|.+.. +++..+..+++|+.|++++|++.. ++  ..+..+++|++|++++|.++
T Consensus        63 ~~L~~L~ls~N~i~~-l~~~~~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          63 RRLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             SSCCEEECCSSCCCE-ECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cchhhhhcccccccC-CCccccccccccccceeccccccc-cccccccccccccchhhcCCCccc
Confidence            578888899988874 433235678889999999998873 33  35778889999999988775

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=3e-06  Score=60.78  Aligned_cols=62  Identities=31%  Similarity=0.379  Sum_probs=52.2

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .++..+++++|.+.. +++..+..+++|+.+++++|++++..|..+..+++|++|||++|+|+
T Consensus       124 ~~l~~L~l~~n~l~~-l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         124 GELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             TTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccccce-eccccccccccchhcccccccccccCccccccccccceeecccCCCc
Confidence            467778888888773 44435788999999999999999877778999999999999999986

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.05  E-value=2.9e-06  Score=62.76  Aligned_cols=59  Identities=25%  Similarity=0.370  Sum_probs=45.4

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      ..++.++++++++.+. +  ++..+++|++|++++|++++ +| .++++++|++|++++|++++
T Consensus       307 ~~l~~L~ls~n~l~~l-~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         307 KNLTYLTLYFNNISDI-S--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             TTCSEEECCSSCCSCC-G--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCB
T ss_pred             cccCeEECCCCCCCCC-c--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCC
Confidence            4677788888888753 2  47788888888888888874 44 58888888888888888875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.98  E-value=6.6e-06  Score=60.77  Aligned_cols=59  Identities=20%  Similarity=0.389  Sum_probs=43.0

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|+|++|.+++ ++  ++.++++|++|++++|.+.+ +++ ++++++|+.|++++|.+++
T Consensus        66 ~nL~~L~Ls~N~l~~-l~--~l~~L~~L~~L~L~~n~i~~-i~~-l~~l~~L~~L~~~~~~~~~  124 (384)
T d2omza2          66 NNLTQINFSNNQLTD-IT--PLKNLTKLVDILMNNNQIAD-ITP-LANLTNLTGLTLFNNQITD  124 (384)
T ss_dssp             TTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred             CCCCEEeCcCCcCCC-Cc--cccCCccccccccccccccc-ccc-ccccccccccccccccccc
Confidence            467788888887774 22  37788888888888888875 333 7788888888888777664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.91  E-value=1.6e-05  Score=55.39  Aligned_cols=59  Identities=20%  Similarity=0.349  Sum_probs=45.6

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.++++++.+...   .++.++++|+.|++++|++.+ +|+ +.++++|++|++++|++++
T Consensus       151 ~~L~~L~l~~n~~~~~---~~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         151 TNLQYLSIGNAQVSDL---TPLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             TTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB
T ss_pred             cccccccccccccccc---hhhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCC
Confidence            4577888888777632   247888889999999998885 554 7888899999999888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.90  E-value=1.4e-05  Score=54.90  Aligned_cols=58  Identities=21%  Similarity=0.366  Sum_probs=41.2

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ..++.|++++|.+++. +  ++.++++|++|++++|.+. .+|+ +.+++.|+.|++++|.+.
T Consensus        62 ~nL~~L~Ls~N~l~~~-~--~l~~l~~L~~L~l~~n~~~-~~~~-l~~l~~L~~L~l~~~~~~  119 (199)
T d2omxa2          62 NNLTQINFSNNQLTDI-T--PLKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLTLFNNQIT  119 (199)
T ss_dssp             TTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCCC
T ss_pred             CCcCcCccccccccCc-c--cccCCcccccccccccccc-cccc-cccccccccccccccccc
Confidence            4677788888777742 2  3777788888888887776 3443 777888888888777654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.80  E-value=2.2e-05  Score=54.34  Aligned_cols=58  Identities=26%  Similarity=0.418  Sum_probs=47.7

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+++.|++++|.+.+ ++  ++..+++|++|++++|++++ +| .+.++++|+.|++++|.+.
T Consensus        68 ~~L~~L~L~~n~i~~-l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~  125 (210)
T d1h6ta2          68 PNVTKLFLNGNKLTD-IK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS  125 (210)
T ss_dssp             TTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC
T ss_pred             CCCCEEeCCCccccC-cc--ccccCccccccccccccccc-cc-ccccccccccccccccccc
Confidence            478899999998885 33  47889999999999999984 66 4888999999999988764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.68  E-value=4.4e-05  Score=52.24  Aligned_cols=58  Identities=24%  Similarity=0.480  Sum_probs=43.4

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      +++.+++++|.+.. ++  .+..+++|++|++.+|++++ +|+ ++++++|++|++++|+++.
T Consensus       129 ~L~~L~l~~n~l~~-~~--~l~~~~~L~~L~l~~n~l~~-l~~-l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         129 NLNRLELSSNTISD-IS--ALSGLTSLQQLNFSSNQVTD-LKP-LANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             TCSEEECCSSCCCC-CG--GGTTCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred             hhHHhhhhhhhhcc-cc--cccccccccccccccccccC-Ccc-ccCCCCCCEEECCCCCCCC
Confidence            56667777776652 22  37778888888888888885 443 8889999999999998764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=2e-05  Score=55.07  Aligned_cols=68  Identities=18%  Similarity=0.361  Sum_probs=48.2

Q ss_pred             CCccccccCC----------CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccch-hhcCCCCCCEEeCc
Q 043483           65 CGWVGITCDY----------EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILS-QIGSLSNLKYLDLD  133 (140)
Q Consensus        65 C~w~gv~C~~----------~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~-~~~~l~~L~~L~ls  133 (140)
                      |....|.|..          ...++.|++++|.+. .++...|.++++|++|++++|.+...+|+ .|.+++.++++++.
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            5666677742          136888999999887 45554688899999999998888766654 45666666666653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.60  E-value=6.8e-05  Score=51.72  Aligned_cols=57  Identities=28%  Similarity=0.376  Sum_probs=27.6

Q ss_pred             CeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           77 RITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        77 ~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      +++.|++++|.+++ ++  .+..+++|+.|++++|.+. .++ .+.++++|+.+++++|.++
T Consensus        91 ~L~~L~l~~n~i~~-l~--~l~~l~~L~~L~l~~~~~~-~~~-~l~~l~~l~~l~~~~n~l~  147 (210)
T d1h6ta2          91 NLGWLFLDENKVKD-LS--SLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT  147 (210)
T ss_dssp             TCCEEECCSSCCCC-GG--GGTTCTTCCEEECTTSCCC-CCG-GGGGCTTCCEEECCSSCCC
T ss_pred             cccccccccccccc-cc--ccccccccccccccccccc-ccc-ccccccccccccccccccc
Confidence            45555555555542 22  2445555555555555544 122 3445555555555555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.44  E-value=3.8e-06  Score=58.21  Aligned_cols=59  Identities=20%  Similarity=0.286  Sum_probs=42.4

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+++.|+|++|.+. .++  .+..+++|++|++++|.+. .+|.....+++|++|++++|+++
T Consensus        48 ~~L~~L~Ls~n~I~-~i~--~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~  106 (198)
T d1m9la_          48 KACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             TTCCEEECSEEEES-CCC--CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC
T ss_pred             cccceeECcccCCC-Ccc--cccCCccccChhhcccccc-ccccccccccccccccccccccc
Confidence            46788888888877 343  3677888888888888876 56655555566777777777765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=1.8e-05  Score=52.84  Aligned_cols=62  Identities=27%  Similarity=0.295  Sum_probs=47.6

Q ss_pred             CCeeEEecCCCCCccccCCc--cCCCCCCCcEEEccCCccccccch-hhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRL--NFSCFPNLQYLDLSNNNLSGSILS-QIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~--~l~~l~~L~~L~l~~n~l~G~iP~-~~~~l~~L~~L~ls~N~lsG  139 (140)
                      ..++.|+|++|.++. +..+  .+..+++|+.|++++|.++. +++ ...+..+|+.|++++|.++.
T Consensus        65 ~~L~~L~Ls~N~i~~-l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          65 PELLSLNLSNNRLYR-LDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             TTCCCCCCCSSCCCC-CSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             CCCCEeeCCCccccC-CchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCc
Confidence            578999999999984 3221  35678999999999999984 443 34455679999999998864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.43  E-value=0.00015  Score=50.23  Aligned_cols=60  Identities=22%  Similarity=0.387  Sum_probs=42.7

Q ss_pred             CCCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           75 EGRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      -.+++.|++++|.+.+. .  ++..+++|+++++++|.++ .++ .+.++++|++++++++...+
T Consensus        62 l~~L~~L~ls~n~i~~~-~--~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~  121 (227)
T d1h6ua2          62 LNNLIGLELKDNQITDL-A--PLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITD  121 (227)
T ss_dssp             CTTCCEEECCSSCCCCC-G--GGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCC
T ss_pred             CCCCcEeecCCceeecc-c--ccccccccccccccccccc-ccc-cccccccccccccccccccc
Confidence            35677888888877642 1  4777788888888888776 444 47778888888887776553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.34  E-value=0.00017  Score=52.05  Aligned_cols=54  Identities=28%  Similarity=0.348  Sum_probs=42.7

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+++.|+|++|.+. .+|.    .+++|+.|++++|+++ .+|..   +++|++|++++|+++
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR  337 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred             CCCCEEECCCCccC-cccc----ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC
Confidence            36788899888887 4543    3678999999999988 67753   567999999999886

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.24  E-value=0.00025  Score=51.09  Aligned_cols=55  Identities=24%  Similarity=0.294  Sum_probs=35.2

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCcC
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~lsG  139 (140)
                      .+++.|+|++|+|+ .+|.    .+.+|+.|++++|.++ .++.   -.+.|++|++++|.++.
T Consensus        58 ~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~-~l~~---lp~~L~~L~L~~n~l~~  112 (353)
T d1jl5a_          58 PHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLK-ALSD---LPPLLEYLGVSNNQLEK  112 (353)
T ss_dssp             TTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCS-CCCS---CCTTCCEEECCSSCCSS
T ss_pred             CCCCEEECCCCCCc-cccc----chhhhhhhhhhhcccc-hhhh---hcccccccccccccccc
Confidence            46777777777776 4443    1356777777777766 3332   12358888888887753

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.07  E-value=3e-05  Score=53.47  Aligned_cols=41  Identities=32%  Similarity=0.486  Sum_probs=36.5

Q ss_pred             cCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           96 NFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        96 ~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      .+..+++|++|++++|.++ .++ .+.++++|++|++++|+++
T Consensus        43 sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~   83 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK   83 (198)
T ss_dssp             HHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC
T ss_pred             HHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc
Confidence            3788999999999999998 566 4899999999999999875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00034  Score=48.44  Aligned_cols=63  Identities=22%  Similarity=0.356  Sum_probs=51.8

Q ss_pred             CCeeEEecCCCCCccccCCccCCCCCCCcEEEcc-CCccccccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGELGRLNFSCFPNLQYLDLS-NNNLSGSILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~l~~~~l~~l~~L~~L~l~-~n~l~G~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ..++.|++++|.+...++...+..++.++++++. .|++....|..+.++++|+++++++|.+.
T Consensus        53 ~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          53 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             TTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             chhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhc
Confidence            4789999999988776666568889999998876 46777766777899999999999998875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00014  Score=52.38  Aligned_cols=58  Identities=31%  Similarity=0.328  Sum_probs=36.7

Q ss_pred             CCeeEEecCCCCCccc-cCCccCCCCCCCcEEEccCCccccccchhhcCCCCCCEEeCcC
Q 043483           76 GRITDIGLAESKIKGE-LGRLNFSCFPNLQYLDLSNNNLSGSILSQIGSLSNLKYLDLDR  134 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~-l~~~~l~~l~~L~~L~l~~n~l~G~iP~~~~~l~~L~~L~ls~  134 (140)
                      .+++.++++++.+... +.. .+..+++|++|+++++.+++..+..++++++|++|++++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~-l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCCEEECCCCccCHHHHHH-HHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            3566777776655432 111 255667777777777777666666677777777777766

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00014  Score=48.37  Aligned_cols=42  Identities=38%  Similarity=0.456  Sum_probs=35.8

Q ss_pred             CCCCCCCcEEEccCCcccc--ccchhhcCCCCCCEEeCcCCcCc
Q 043483           97 FSCFPNLQYLDLSNNNLSG--SILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        97 l~~l~~L~~L~l~~n~l~G--~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ...+++|++|++++|+++.  .++..+..+++|+.||+++|.++
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            3568899999999999985  34566788999999999999986

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00013  Score=54.29  Aligned_cols=62  Identities=19%  Similarity=0.358  Sum_probs=36.0

Q ss_pred             CeeEEecCCCCCcc----ccCCccCCCCCCCcEEEccCCccccc----cchhhc-CCCCCCEEeCcCCcCcC
Q 043483           77 RITDIGLAESKIKG----ELGRLNFSCFPNLQYLDLSNNNLSGS----ILSQIG-SLSNLKYLDLDRNNLSG  139 (140)
Q Consensus        77 ~v~~L~L~~~~l~g----~l~~~~l~~l~~L~~L~l~~n~l~G~----iP~~~~-~l~~L~~L~ls~N~lsG  139 (140)
                      +.+.|+|++++++-    .++. .+..+++|++|+|++|.++..    +...+. ...+|++|++++|+++.
T Consensus        28 ~l~~L~L~~~~i~~~~~~~l~~-~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~   98 (460)
T d1z7xw1          28 QCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG   98 (460)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred             CCCEEEeCCCCCCHHHHHHHHH-HHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccc
Confidence            45566666666541    1111 255677788888888877521    122222 23468888888887753

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0016  Score=46.63  Aligned_cols=59  Identities=24%  Similarity=0.316  Sum_probs=42.2

Q ss_pred             CCeeEEecCCC-CCccccCCccCCCCCCCcEEEccC-CccccccchhhcCCCCCCEEeCcCC
Q 043483           76 GRITDIGLAES-KIKGELGRLNFSCFPNLQYLDLSN-NNLSGSILSQIGSLSNLKYLDLDRN  135 (140)
Q Consensus        76 ~~v~~L~L~~~-~l~g~l~~~~l~~l~~L~~L~l~~-n~l~G~iP~~~~~l~~L~~L~ls~N  135 (140)
                      .+++.|+++++ .+++.... .+.++++|++|++++ +.+++.....++++++|+.|+++++
T Consensus       175 ~~L~~L~L~~~~~itd~~~~-~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         175 PNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccCCCchhhh-hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            35778888764 35543333 577788888888887 5677666667888888888888765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00034  Score=51.89  Aligned_cols=62  Identities=19%  Similarity=0.277  Sum_probs=44.7

Q ss_pred             CCeeEEecCCCCCccc----cCCccC-CCCCCCcEEEccCCcccc----ccchhhcCCCCCCEEeCcCCcCc
Q 043483           76 GRITDIGLAESKIKGE----LGRLNF-SCFPNLQYLDLSNNNLSG----SILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        76 ~~v~~L~L~~~~l~g~----l~~~~l-~~l~~L~~L~l~~n~l~G----~iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ..++.|+|++|.+...    +.. .+ ...+.|++|++++|.++.    .++..+..+++|++||+++|+++
T Consensus       340 ~~L~~L~Ls~N~i~~~g~~~l~~-~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         340 RFLLELQISNNRLEDAGVRELCQ-GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHH-HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             cchhhhheeeecccCcccchhhh-hhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            4688899988887632    111 12 245678999999999874    35556777889999999999875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.11  E-value=0.0017  Score=47.33  Aligned_cols=42  Identities=26%  Similarity=0.345  Sum_probs=20.5

Q ss_pred             CCCCCCCcEEEccCCccccccch----hhcC--CCCCCEEeCcCCcCc
Q 043483           97 FSCFPNLQYLDLSNNNLSGSILS----QIGS--LSNLKYLDLDRNNLS  138 (140)
Q Consensus        97 l~~l~~L~~L~l~~n~l~G~iP~----~~~~--l~~L~~L~ls~N~ls  138 (140)
                      +...++|++|++++|.+++.-..    .+.+  .+.|++||+++|+++
T Consensus       239 l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             ccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            44455566666666655533221    1221  245566666666543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.30  E-value=0.0048  Score=44.73  Aligned_cols=38  Identities=29%  Similarity=0.435  Sum_probs=20.8

Q ss_pred             CCCcEEEccCCccccc----cchhh-cCCCCCCEEeCcCCcCc
Q 043483          101 PNLQYLDLSNNNLSGS----ILSQI-GSLSNLKYLDLDRNNLS  138 (140)
Q Consensus       101 ~~L~~L~l~~n~l~G~----iP~~~-~~l~~L~~L~ls~N~ls  138 (140)
                      +.|++|++++|.++..    +...+ .++++|++|++++|.|.
T Consensus       273 ~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         273 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             CCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            4566666666666532    22223 24556666666666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.53  E-value=0.025  Score=36.98  Aligned_cols=64  Identities=20%  Similarity=0.250  Sum_probs=45.2

Q ss_pred             CCCeeEEecCCCCCccccC-Cc--cCCCCCCCcEEEccCCccccc----cchhhcCCCCCCEEeCcCCcCc
Q 043483           75 EGRITDIGLAESKIKGELG-RL--NFSCFPNLQYLDLSNNNLSGS----ILSQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g~l~-~~--~l~~l~~L~~L~l~~n~l~G~----iP~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ...++.|+|+++.+...-. .+  .+..-+.|+.|++++|.+...    +-..+...+.|++|++++|.+.
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence            4578999999988863211 11  144567899999999998743    2234667788999999988643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.89  E-value=0.023  Score=37.20  Aligned_cols=62  Identities=13%  Similarity=0.136  Sum_probs=41.8

Q ss_pred             CCCeeEEecCCCCCcccc-CCc--cCCCCCCCcEEEccCCcccc-------ccchhhcCCCCCCEEeCcCCc
Q 043483           75 EGRITDIGLAESKIKGEL-GRL--NFSCFPNLQYLDLSNNNLSG-------SILSQIGSLSNLKYLDLDRNN  136 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g~l-~~~--~l~~l~~L~~L~l~~n~l~G-------~iP~~~~~l~~L~~L~ls~N~  136 (140)
                      ...++.|+|++|.+...- ..+  .+..-+.|++|++++|.+..       .+...+..-+.|+.|+++.+.
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            356889999998886421 000  26666789999998886542       134455667888999887764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=89.38  E-value=0.21  Score=31.95  Aligned_cols=63  Identities=17%  Similarity=0.281  Sum_probs=40.9

Q ss_pred             CCCeeEEecCCCCCccccCC-c--cCCCCCCCcEEEccCCccccc----cchhhcCCCCCCEEeC--cCCcC
Q 043483           75 EGRITDIGLAESKIKGELGR-L--NFSCFPNLQYLDLSNNNLSGS----ILSQIGSLSNLKYLDL--DRNNL  137 (140)
Q Consensus        75 ~~~v~~L~L~~~~l~g~l~~-~--~l~~l~~L~~L~l~~n~l~G~----iP~~~~~l~~L~~L~l--s~N~l  137 (140)
                      ..+++.|+|+++.+...... +  .+...+.++.+++++|.+...    +-..+...+.|+.++|  +.|.+
T Consensus        45 n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i  116 (166)
T d1io0a_          45 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPL  116 (166)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred             CCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcC
Confidence            45788899998887632110 0  145567888999988888643    2245667788887655  45554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=84.78  E-value=0.47  Score=30.19  Aligned_cols=64  Identities=11%  Similarity=0.176  Sum_probs=45.1

Q ss_pred             CCCeeEEecCC-CCCcccc-CCc--cCCCCCCCcEEEccCCccccccc----hhhcCCCCCCEEeCcCCcCc
Q 043483           75 EGRITDIGLAE-SKIKGEL-GRL--NFSCFPNLQYLDLSNNNLSGSIL----SQIGSLSNLKYLDLDRNNLS  138 (140)
Q Consensus        75 ~~~v~~L~L~~-~~l~g~l-~~~--~l~~l~~L~~L~l~~n~l~G~iP----~~~~~l~~L~~L~ls~N~ls  138 (140)
                      ...++.++|++ +.++... ..+  .+...++|+.|++++|.++..--    ..+...+.++.+++++|.++
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            45789999987 4454211 000  25678899999999999875322    34566789999999998875