Citrus Sinensis ID: 043503
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | 2.2.26 [Sep-21-2011] | |||||||
| Q94KE1 | 655 | Probable methyltransferas | no | no | 0.337 | 0.221 | 0.273 | 4e-06 | |
| Q94II3 | 600 | Probable methyltransferas | no | no | 0.223 | 0.16 | 0.308 | 6e-06 | |
| Q9ZW75 | 611 | Probable methyltransferas | no | no | 0.260 | 0.183 | 0.346 | 6e-06 | |
| Q8GYW9 | 603 | Probable methyltransferas | no | no | 0.274 | 0.195 | 0.345 | 2e-05 | |
| Q9C6S7 | 603 | Probable methyltransferas | no | no | 0.230 | 0.164 | 0.288 | 5e-05 | |
| A9MCZ2 | 269 | Ubiquinone/menaquinone bi | yes | no | 0.248 | 0.397 | 0.304 | 9e-05 | |
| Q8YDE4 | 269 | Ubiquinone/menaquinone bi | yes | no | 0.248 | 0.397 | 0.304 | 9e-05 | |
| C0RMK3 | 269 | Ubiquinone/menaquinone bi | yes | no | 0.248 | 0.397 | 0.304 | 9e-05 | |
| Q576Q0 | 269 | Ubiquinone/menaquinone bi | yes | no | 0.248 | 0.397 | 0.304 | 9e-05 | |
| Q2YJM4 | 269 | Ubiquinone/menaquinone bi | yes | no | 0.248 | 0.397 | 0.304 | 9e-05 |
| >sp|Q94KE1|PMTA_ARATH Probable methyltransferase PMT10 OS=Arabidopsis thaliana GN=At1g77260 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 16/161 (9%)
Query: 249 REKSRWLIDNGK------LDYGIDQVLSMKPLGTI----RIGLDIGGGTGTFAARMRERN 298
REK +++ G D +DQ+ M P T R+ LDIG G +F A + +RN
Sbjct: 229 REKDKFVFPGGGTQFIHGADQYLDQISQMIPDITFGSRTRVALDIGCGVASFGAFLMQRN 288
Query: 299 VTIITTS-LNLDGPFNSFIASRGLISM-HISVSQRLPFFENTLDIVHSMHVLSNWIPDSM 356
T ++ + ++ F RG+ +M + ++RL + + +++H NW D
Sbjct: 289 TTTLSVAPKDVHENQIQFALERGVPAMVAVFATRRLLYPSQSFEMIHCSRCRINWTRDDG 348
Query: 357 LEFTLYDIYRLLRPGGIF-WLDR-FFCFGSQLNETYVPMLD 395
+ L ++ R+LR GG F W + + L E + MLD
Sbjct: 349 I--LLLEVNRMLRAGGYFVWAAQPVYKHEDNLQEQWKEMLD 387
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q94II3|PMTL_ARATH Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
Query: 275 GTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFN-SFIASRGLIS-MHISVSQRL 332
GTIR +D G G ++ + +R + ++ + + F RG+ + + I +QRL
Sbjct: 191 GTIRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFALERGIPAILGIISTQRL 250
Query: 333 PFFENTLDIVHSMHVLSNWIPDSMLEFT---LYDIYRLLRPGGIFWL 376
PF N+ D+ H L W EF L +++R+LRPGG FW+
Sbjct: 251 PFPSNSFDMAHCSRCLIPWT-----EFGGVYLLEVHRILRPGG-FWV 291
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9ZW75|PMTJ_ARATH Probable methyltransferase PMT19 OS=Arabidopsis thaliana GN=At2g43200 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 12/124 (9%)
Query: 259 GKLDYGIDQVLSMKPL--GTIRIGLDIGGGTGTFAARMRERNVTIITTSL---NLDGPFN 313
G DY +D +LS+ PL G+IR LDIG G +F A + N I+T S+ ++
Sbjct: 195 GVKDY-VDVILSVLPLASGSIRTVLDIGCGVASFGAFLL--NYKILTMSIAPRDIHEAQV 251
Query: 314 SFIASRGLISM-HISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGG 372
F RGL +M + + +LP+ + D+VH L NW S L ++ R+LRP G
Sbjct: 252 QFALERGLPAMLGVLSTYKLPYPSRSFDMVHCSRCLVNWT--SYDGLYLMEVDRVLRPEG 309
Query: 373 IFWL 376
+W+
Sbjct: 310 -YWV 312
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8GYW9|PMT4_ARATH Probable methyltransferase PMT4 OS=Arabidopsis thaliana GN=At1g13860 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 63/133 (47%), Gaps = 15/133 (11%)
Query: 255 LIDNGKLDYGIDQVLSMKPLGT--------IRIGLDIGGGTGTFAARMRERNVT-IITTS 305
LI +G DY Q+ M LG+ IR LDIG G G+F A + NV I
Sbjct: 172 LIFDGVKDYAF-QIAEMIGLGSDTEFPQAGIRTVLDIGCGFGSFGAHLVSLNVMPICIAE 230
Query: 306 LNLDGPFNSFIASRGLISMHIS-VSQRLPFFENTLDIVHSMHVLSNW-IPDSMLEFTLYD 363
G RGL +M + S++LP+ + D+VH W I D+ML L +
Sbjct: 231 YETSGSQVQLALERGLPAMIGNFFSKQLPYPALSFDMVHCAQCGITWDIKDAML---LLE 287
Query: 364 IYRLLRPGGIFWL 376
+ R+L+PGG F L
Sbjct: 288 VDRVLKPGGYFVL 300
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C6S7|PMTK_ARATH Probable methyltransferase PMT20 OS=Arabidopsis thaliana GN=At1g31850 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 275 GTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFN-SFIASRGLIS-MHISVSQRL 332
GT+R +D G G ++ + +R + ++ + + F RG+ + + I +QRL
Sbjct: 197 GTVRTAIDTGCGVASWGGDLLDRGILSLSLAPRDNHEAQVQFALERGIPAILGIISTQRL 256
Query: 333 PFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376
PF N D+ H L W L +I+R++RPGG FW+
Sbjct: 257 PFPSNAFDMAHCSRCLIPWT--EFGGIYLLEIHRIVRPGG-FWV 297
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A9MCZ2|UBIE_BRUC2 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 18/125 (14%)
Query: 281 LDIGGGTGTFAARM-----RERNVTIITTSLNLDGPFNSFIASRGLISMHISV---SQRL 332
LD+ GGTG A R+ R+ +VTI+ + ++ G +GLI V ++ L
Sbjct: 86 LDVAGGTGDIAFRIVEVSGRQAHVTILDINGSMLGVGRERAIKKGLIDNLEFVEANAEEL 145
Query: 333 PFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVP 392
PF +N+ D + N +P ++ L + YR+L+PGG RF C + +E +P
Sbjct: 146 PFEDNSFDAYTIAFGIRN-VP--HIDKALSEAYRVLKPGG-----RFLCL--EFSEVELP 195
Query: 393 MLDRI 397
+LD++
Sbjct: 196 VLDKV 200
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Brucella canis (strain ATCC 23365 / NCTC 10854) (taxid: 483179) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q8YDE4|UBIE_BRUME Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 18/125 (14%)
Query: 281 LDIGGGTGTFAARM-----RERNVTIITTSLNLDGPFNSFIASRGLISMHISV---SQRL 332
LD+ GGTG A R+ R+ +VTI+ + ++ G +GLI V ++ L
Sbjct: 86 LDVAGGTGDIAFRIVEASGRQAHVTILDINGSMLGVGRERAIKKGLIDNLEFVEANAEEL 145
Query: 333 PFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVP 392
PF +N+ D + N +P ++ L + YR+L+PGG RF C + +E +P
Sbjct: 146 PFEDNSFDAYTIAFGIRN-VP--HIDKALSEAYRVLKPGG-----RFLCL--EFSEVELP 195
Query: 393 MLDRI 397
+LD++
Sbjct: 196 VLDKV 200
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) (taxid: 224914) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|C0RMK3|UBIE_BRUMB Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 18/125 (14%)
Query: 281 LDIGGGTGTFAARM-----RERNVTIITTSLNLDGPFNSFIASRGLISMHISV---SQRL 332
LD+ GGTG A R+ R+ +VTI+ + ++ G +GLI V ++ L
Sbjct: 86 LDVAGGTGDIAFRIVEASGRQAHVTILDINGSMLGVGRERAIKKGLIDNLEFVEANAEEL 145
Query: 333 PFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVP 392
PF +N+ D + N +P ++ L + YR+L+PGG RF C + +E +P
Sbjct: 146 PFEDNSFDAYTIAFGIRN-VP--HIDKALSEAYRVLKPGG-----RFLCL--EFSEVELP 195
Query: 393 MLDRI 397
+LD++
Sbjct: 196 VLDKV 200
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Brucella melitensis biotype 2 (strain ATCC 23457) (taxid: 546272) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q576Q0|UBIE_BRUAB Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Brucella abortus biovar 1 (strain 9-941) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 18/125 (14%)
Query: 281 LDIGGGTGTFAARM-----RERNVTIITTSLNLDGPFNSFIASRGLISMHISV---SQRL 332
LD+ GGTG A R+ R+ +VTI+ + ++ G +GLI V ++ L
Sbjct: 86 LDVAGGTGDIAFRIVEASGRQAHVTILDINGSMLGVGRERAIKKGLIDNLEFVEANAEEL 145
Query: 333 PFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVP 392
PF +N+ D + N +P ++ L + YR+L+PGG RF C + +E +P
Sbjct: 146 PFEDNSFDAYTIAFGIRN-VP--HIDKALSEAYRVLKPGG-----RFLCL--EFSEVELP 195
Query: 393 MLDRI 397
+LD++
Sbjct: 196 VLDKV 200
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Brucella abortus biovar 1 (strain 9-941) (taxid: 262698) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q2YJM4|UBIE_BRUA2 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Brucella abortus (strain 2308) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 18/125 (14%)
Query: 281 LDIGGGTGTFAARM-----RERNVTIITTSLNLDGPFNSFIASRGLISMHISV---SQRL 332
LD+ GGTG A R+ R+ +VTI+ + ++ G +GLI V ++ L
Sbjct: 86 LDVAGGTGDIAFRIVEASGRQAHVTILDINGSMLGVGRERAIKKGLIDNLEFVEANAEEL 145
Query: 333 PFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVP 392
PF +N+ D + N +P ++ L + YR+L+PGG RF C + +E +P
Sbjct: 146 PFEDNSFDAYTIAFGIRN-VP--HIDKALSEAYRVLKPGG-----RFLCL--EFSEVELP 195
Query: 393 MLDRI 397
+LD++
Sbjct: 196 VLDKV 200
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Brucella abortus (strain 2308) (taxid: 359391) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | ||||||
| 224129542 | 450 | predicted protein [Populus trichocarpa] | 0.981 | 0.937 | 0.722 | 0.0 | |
| 255556693 | 449 | ATRAD3, putative [Ricinus communis] gi|2 | 0.983 | 0.942 | 0.723 | 1e-177 | |
| 356555829 | 437 | PREDICTED: uncharacterized protein LOC10 | 0.953 | 0.938 | 0.671 | 1e-169 | |
| 357448323 | 459 | hypothetical protein MTR_2g028610 [Medic | 0.981 | 0.919 | 0.651 | 1e-164 | |
| 357448319 | 464 | hypothetical protein MTR_2g028590 [Medic | 0.979 | 0.907 | 0.646 | 1e-163 | |
| 224129550 | 326 | predicted protein [Populus trichocarpa] | 0.751 | 0.990 | 0.804 | 1e-162 | |
| 357143176 | 441 | PREDICTED: uncharacterized protein LOC10 | 0.967 | 0.943 | 0.554 | 1e-132 | |
| 357143173 | 452 | PREDICTED: uncharacterized protein LOC10 | 0.960 | 0.913 | 0.553 | 1e-130 | |
| 357167664 | 462 | PREDICTED: uncharacterized protein LOC10 | 0.972 | 0.904 | 0.515 | 1e-129 | |
| 242077967 | 490 | hypothetical protein SORBIDRAFT_07g00135 | 0.990 | 0.869 | 0.535 | 1e-128 |
| >gi|224129542|ref|XP_002328742.1| predicted protein [Populus trichocarpa] gi|222839040|gb|EEE77391.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/433 (72%), Positives = 359/433 (82%), Gaps = 11/433 (2%)
Query: 1 MLLLVILTNLLTIYIFTGPSFSLK---LNSYSNQLTLPLLNSTVLLSEFSSTKIELAASH 57
M +LVILTNLLT+YIFT PSF+ K L S N ++LPL + T LL E S+TK +LA SH
Sbjct: 26 MFVLVILTNLLTMYIFTSPSFNWKPFPLGS-KNHISLPLGDPTTLLDELSATKEQLAISH 84
Query: 58 GIIAELQQQLNSTNLLVQALLIELTREFVHPNEKVSGINLSAVMSKLSDDLTVGLPDEVK 117
+IAE ++LNSTNL V+ALL EL EK G + + L + DEV
Sbjct: 85 SLIAEFHKKLNSTNLFVEALLTELRSRQEGLTEKEKGSDPMKL-------LNAAMSDEVM 137
Query: 118 LAVGPHKLPLGYSPRMGSDEVIAPVGAGCSKFHDELLKYMTYDIGGECPVDDVFAQRLML 177
L VGPHKLPLGYSPRMGSDEV PVG C ++ +EL +YMTY++G ECPVDDVFAQRLML
Sbjct: 138 LVVGPHKLPLGYSPRMGSDEVYPPVGGACLRYQEELAQYMTYEVGRECPVDDVFAQRLML 197
Query: 178 KGCEPLPRRRCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKAPGF 237
KGCEPLPRRRC PKSP NYVEPT P SLW P +TSIIWDPY+CKSY+CLI+R+KAPG+
Sbjct: 198 KGCEPLPRRRCHPKSPANYVEPTPFPKSLWTTPPDTSIIWDPYTCKSYKCLIERRKAPGY 257
Query: 238 FDCKDCFDLQGREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER 297
FDCKDCFDL+GREKSRWL+DNG LDYGID+VL +P GTIRIG DIGGG+GTFAARM+ER
Sbjct: 258 FDCKDCFDLEGREKSRWLLDNGGLDYGIDEVLKTRPQGTIRIGFDIGGGSGTFAARMKER 317
Query: 298 NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSML 357
NVTIIT+S+NLDGPFNSFIASRGLIS+H+SVSQRLPFF+NTLDIVHSMHVLSNWIPD+ML
Sbjct: 318 NVTIITSSMNLDGPFNSFIASRGLISIHVSVSQRLPFFDNTLDIVHSMHVLSNWIPDAML 377
Query: 358 EFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMKLDRGVKKN 417
EFTLYDIYR+LRPGG+FWLDRFFC GSQLN+TYVPMLDR+GF+ LRWN GMKLDRG+ KN
Sbjct: 378 EFTLYDIYRVLRPGGLFWLDRFFCLGSQLNQTYVPMLDRVGFRNLRWNAGMKLDRGIDKN 437
Query: 418 EWYFSAVLEKPMT 430
EWYFSA+LEKPMT
Sbjct: 438 EWYFSALLEKPMT 450
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556693|ref|XP_002519380.1| ATRAD3, putative [Ricinus communis] gi|223541447|gb|EEF42997.1| ATRAD3, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 312/431 (72%), Positives = 364/431 (84%), Gaps = 8/431 (1%)
Query: 1 MLLLVILTNLLTIYIFTGPSFSLKL-NSYSNQLTLPLLNSTVLLSEFSSTKIELAASHGI 59
ML+LVILTNLLT+YIF GPS +LKL + +N + L +S +LL E +STK +LAAS +
Sbjct: 26 MLVLVILTNLLTVYIFAGPSLNLKLPGACTNHIPFTLWDSNILLRELNSTKEQLAASTLL 85
Query: 60 IAELQQQLNSTNLLVQALLIELTREFVHPNEKVSGINLSAVMSKLSDDLTVGLPDEVKLA 119
I++L Q+LNSTNLLV+ALLIELT H EK L+ + K D V DEV L+
Sbjct: 86 ISDLHQKLNSTNLLVEALLIELTSAQQH--EK-----LAQLPVKYPDVSGVDFSDEVTLS 138
Query: 120 VGPHKLPLGYSPRMGSDEVIAPVGAGCSKFHDELLKYMTYDIGGECPVDDVFAQRLMLKG 179
+GPHKLPLGYSPRMGSDEV AP GA C ++ ++L KYMTY++GG CPVDDVFAQRL+LKG
Sbjct: 139 IGPHKLPLGYSPRMGSDEVHAPAGAACLRYQEDLTKYMTYEVGGVCPVDDVFAQRLLLKG 198
Query: 180 CEPLPRRRCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKAPGFFD 239
CEPLPRRRC+P+SP NYVEPT +P+SLW P +TSIIWDPY+CKSY+CL++R+ PG+FD
Sbjct: 199 CEPLPRRRCRPRSPENYVEPTPLPNSLWATPPDTSIIWDPYTCKSYKCLVNRQNEPGYFD 258
Query: 240 CKDCFDLQGREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNV 299
CKDCF+LQGREK+RW+ DNG LDYGIDQVL KP GTIRIGLDIGGGTGTFAARM+ERN+
Sbjct: 259 CKDCFNLQGREKTRWMFDNGGLDYGIDQVLKSKPHGTIRIGLDIGGGTGTFAARMKERNI 318
Query: 300 TIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEF 359
TIIT+S+NLDGPFNSFIASRGLI +H+SVSQRLPFFENTLDIVHSMHVLSNWIPD+MLEF
Sbjct: 319 TIITSSMNLDGPFNSFIASRGLIPIHVSVSQRLPFFENTLDIVHSMHVLSNWIPDAMLEF 378
Query: 360 TLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMKLDRGVKKNEW 419
TLYDIYR+LRPGG+FWLD FFC GSQLNETY PMLD +GFKKLRWN G KLDRG+ KNEW
Sbjct: 379 TLYDIYRVLRPGGLFWLDHFFCTGSQLNETYTPMLDSVGFKKLRWNAGKKLDRGIHKNEW 438
Query: 420 YFSAVLEKPMT 430
YFSA+LEKPMT
Sbjct: 439 YFSALLEKPMT 449
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555829|ref|XP_003546232.1| PREDICTED: uncharacterized protein LOC100794863 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust.
Identities = 288/429 (67%), Positives = 347/429 (80%), Gaps = 19/429 (4%)
Query: 2 LLLVILTNLLTIYIFTGPSFSLKLNSYSNQLTLPLLNSTVLLSEFSSTKIELAASHGIIA 61
+LLVILTNL+TIYIFTGP L +S S + +S +L E +STK +L A+H +++
Sbjct: 28 ILLVILTNLVTIYIFTGPISFLYHSSTSPR------DSNSILMELNSTKAQLVATHSLLS 81
Query: 62 ELQQQLNSTNLLVQALLIELTREFVHPNEKVSGINLSAVMSKLSDDLTVGLPDEVKLAVG 121
EL +LNS+NLLVQALLI+LTR+ EK S SA +++S L VG DE+ A+G
Sbjct: 82 ELHHRLNSSNLLVQALLIDLTRQ----QEKQSN---SADQNQVS--LKVG-SDELSFALG 131
Query: 122 PHKLPLGYSPRMGSDEVIAPVGAGCSKFHDELLKYMTYDIGGECPVDDVFAQRLMLKGCE 181
PHKLP GYSPR+GSDE+ P GA C + H+EL +YM Y+IGGECP+DDV AQRLMLKGCE
Sbjct: 132 PHKLPFGYSPRIGSDEIHLPAGASCMRLHEELTQYMAYEIGGECPMDDVLAQRLMLKGCE 191
Query: 182 PLPRRRCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKAPGFFDCK 241
P PRRRC+PKSP NYVEPT +P+SLW P +TSI+WD Y+CKSYQCLIDRK PG +DCK
Sbjct: 192 PFPRRRCRPKSPTNYVEPTPLPESLWTTPPDTSIVWDAYACKSYQCLIDRKNKPGSYDCK 251
Query: 242 DCFDLQGREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTI 301
+CFDLQG EKS+W+ D+G LD+GIDQVL+ K +GT+R+GLDIGG TGTFAARMRERNV I
Sbjct: 252 NCFDLQGEEKSKWIFDDGGLDFGIDQVLATKAMGTVRVGLDIGGETGTFAARMRERNVII 311
Query: 302 ITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTL 361
IT++LNLDGPFN+ IASRGL+ MHIS+SQR PFF+NTLDIVHSM VLSNWIPD+MLEF L
Sbjct: 312 ITSTLNLDGPFNNIIASRGLVPMHISISQRFPFFDNTLDIVHSMDVLSNWIPDTMLEFVL 371
Query: 362 YDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMKLDRGVKKNEWYF 421
YD+YR+LRPGG+FWLD FFCFGSQLN+TYVPMLDRIGF +LRW+VG KLDR KN Y
Sbjct: 372 YDVYRVLRPGGLFWLDHFFCFGSQLNKTYVPMLDRIGFNRLRWHVGTKLDR---KNVLYI 428
Query: 422 SAVLEKPMT 430
SA++EKPMT
Sbjct: 429 SALMEKPMT 437
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357448323|ref|XP_003594437.1| hypothetical protein MTR_2g028610 [Medicago truncatula] gi|355483485|gb|AES64688.1| hypothetical protein MTR_2g028610 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 281/431 (65%), Positives = 344/431 (79%), Gaps = 9/431 (2%)
Query: 2 LLLVILTNLLTIYIFTGP-SFSLKLNSYSNQLTLPLLNSTVLLSEFSSTKIELAASHGII 60
++L+I TNL TIY+FTGP SF + +S S+ + +L E +STK +LAASH I+
Sbjct: 34 VMLIIFTNLFTIYMFTGPFSFMYRYSSMSSSDS------NSILQELNSTKAQLAASHTIL 87
Query: 61 AELQQQLNSTNLLVQALLIELTREFVHPNEKVSGINLSAVMSKLSDDLTVG-LPDEVKLA 119
+EL Q+LNSTNLLVQALLI+LTRE + +V L + K G L DE+ +A
Sbjct: 88 SELHQRLNSTNLLVQALLIDLTREQEKHSNRVDENPLIVKLGKDDSTTAAGSLSDELSIA 147
Query: 120 VGPHKLPLGYSPRMGSDEVIAPVGAGCSKFHDELLKYMTYDIGGECPVDDVFAQRLMLKG 179
+GPHKLP GYSP++GSDE+ +G C + ++EL +YMTYDIGGECPVD+V +Q L+LKG
Sbjct: 148 LGPHKLPYGYSPKIGSDEIHMTIGEACLRLNEELKQYMTYDIGGECPVDEVLSQGLILKG 207
Query: 180 CEPLPRRRCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKAPG-FF 238
CEPLPRRRC PKSP+NYVEPT +PDSLW P +TSIIW+PYSCKSYQCL+DRK PG +
Sbjct: 208 CEPLPRRRCHPKSPMNYVEPTPLPDSLWTTPPDTSIIWEPYSCKSYQCLVDRKNEPGNSY 267
Query: 239 DCKDCFDLQGREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERN 298
DCK CFDL+ EK +W+ D+G LD+GIDQVL+ K GTIRIGLDIGGG+GTFAARMRERN
Sbjct: 268 DCKGCFDLEKEEKIKWIFDDGGLDFGIDQVLATKAPGTIRIGLDIGGGSGTFAARMRERN 327
Query: 299 VTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLE 358
VT+IT++LNLDGPFN+ +ASRGLI MHIS+SQR PFFENTLDIVHSM V+ NW+PD+MLE
Sbjct: 328 VTVITSTLNLDGPFNNMVASRGLIPMHISISQRFPFFENTLDIVHSMDVIGNWMPDTMLE 387
Query: 359 FTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMKLDRGVKKNE 418
F LYDIYR+LRPGG+FWLD FFCFGSQLN+TYVPMLDR+GF KLRW+VGMKLD V+K+
Sbjct: 388 FVLYDIYRVLRPGGLFWLDHFFCFGSQLNKTYVPMLDRVGFNKLRWHVGMKLDPKVRKDV 447
Query: 419 WYFSAVLEKPM 429
W SA++EKPM
Sbjct: 448 WLISALMEKPM 458
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357448319|ref|XP_003594435.1| hypothetical protein MTR_2g028590 [Medicago truncatula] gi|355483483|gb|AES64686.1| hypothetical protein MTR_2g028590 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 278/430 (64%), Positives = 340/430 (79%), Gaps = 9/430 (2%)
Query: 3 LLVILTNLLTIYIFTGP-SFSLKLNSYSNQLTLPLLNSTVLLSEFSSTKIELAASHGIIA 61
+L+I TNL+TIY+FTGP SF K +S S + +L E +STK +LAASH I++
Sbjct: 40 MLIIFTNLVTIYMFTGPFSFMYKYSSMSPSDS------NSILQELNSTKAQLAASHTILS 93
Query: 62 ELQQQLNSTNLLVQALLIELTREFVHPNEKVSGINLSA-VMSKLSDDLTVGLPDEVKLAV 120
EL Q+LNSTNLLVQALLI+LTRE + L+A +++ S+ + DE+ +A+
Sbjct: 94 ELHQRLNSTNLLVQALLIDLTREQEKQSNHADKNTLTANLVNGDSNTAAATISDELGIAL 153
Query: 121 GPHKLPLGYSPRMGSDEVIAPVGAGCSKFHDELLKYMTYDIGGECPVDDVFAQRLMLKGC 180
GPHKLP YSP++GS E+ PVG C + H+EL +YMTYDIGGECPVDDV +Q L+LKGC
Sbjct: 154 GPHKLPFEYSPKIGSGEIYMPVGEACLRLHEELKQYMTYDIGGECPVDDVLSQGLILKGC 213
Query: 181 EPLPRRRCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKAPG-FFD 239
EPLPRRRC KS NYVEPT +PDSLW P +TS+IW+PYSCKSYQCL+DRK PG +D
Sbjct: 214 EPLPRRRCHSKSLTNYVEPTPLPDSLWMTPPDTSVIWEPYSCKSYQCLVDRKNEPGNSYD 273
Query: 240 CKDCFDLQGREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNV 299
CK CFDL+ EK +W+ D+G LD+GIDQVL+ K GTIRIGLDIGGGTGTFAARMRERNV
Sbjct: 274 CKSCFDLEKEEKIKWIFDDGGLDFGIDQVLATKAAGTIRIGLDIGGGTGTFAARMRERNV 333
Query: 300 TIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEF 359
TIIT++LNLDGPFN+ IASRGLISM+IS+SQR PFF+NTLDIVHS V+ NW+PD+M+EF
Sbjct: 334 TIITSTLNLDGPFNNMIASRGLISMYISISQRFPFFDNTLDIVHSRDVIGNWMPDTMVEF 393
Query: 360 TLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMKLDRGVKKNEW 419
LYDIYR+LRPGG+FWLD FFCF SQ+ +TYVPMLDR+GF KLRW+VGMK+D V+KN W
Sbjct: 394 VLYDIYRVLRPGGLFWLDHFFCFASQIKKTYVPMLDRVGFHKLRWHVGMKVDSVVQKNVW 453
Query: 420 YFSAVLEKPM 429
Y SA+LEKPM
Sbjct: 454 YISALLEKPM 463
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129550|ref|XP_002328744.1| predicted protein [Populus trichocarpa] gi|222839042|gb|EEE77393.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 260/323 (80%), Positives = 292/323 (90%)
Query: 108 LTVGLPDEVKLAVGPHKLPLGYSPRMGSDEVIAPVGAGCSKFHDELLKYMTYDIGGECPV 167
L + DEV L VGPHKLPLGYSPRMGSDEV PVG C ++ +EL +YMTY++G ECPV
Sbjct: 4 LNAAMSDEVMLVVGPHKLPLGYSPRMGSDEVYPPVGGACLRYQEELAQYMTYEVGRECPV 63
Query: 168 DDVFAQRLMLKGCEPLPRRRCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQC 227
DDVFAQRLMLKGCEPLPRRRC PKSP NYVEPT P SLW P +TSIIWDPY+CKSY+C
Sbjct: 64 DDVFAQRLMLKGCEPLPRRRCHPKSPANYVEPTPFPKSLWTTPPDTSIIWDPYTCKSYKC 123
Query: 228 LIDRKKAPGFFDCKDCFDLQGREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGT 287
LI+R+KAPG+FDCKDCFDL+GREKSRWL+DNG LDYGID+VL +P GTIRIG DIGGG+
Sbjct: 124 LIERRKAPGYFDCKDCFDLEGREKSRWLLDNGGLDYGIDEVLKTRPQGTIRIGFDIGGGS 183
Query: 288 GTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHV 347
GTFAARM+ERNVTIIT+S+NLDGPFNSFIASRGLIS+H+SVSQRLPFF+NTLDIVHSMHV
Sbjct: 184 GTFAARMKERNVTIITSSMNLDGPFNSFIASRGLISIHVSVSQRLPFFDNTLDIVHSMHV 243
Query: 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVG 407
LSNWIPD+MLEFTLYDIYR+LRPGG+FWLDRFFC GSQLN+TYVPMLDR+GF+ LRWN G
Sbjct: 244 LSNWIPDAMLEFTLYDIYRVLRPGGLFWLDRFFCLGSQLNQTYVPMLDRVGFRNLRWNAG 303
Query: 408 MKLDRGVKKNEWYFSAVLEKPMT 430
MKLDRG+ KNEWYFSA+LEKPMT
Sbjct: 304 MKLDRGIDKNEWYFSALLEKPMT 326
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357143176|ref|XP_003572829.1| PREDICTED: uncharacterized protein LOC100828000 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 240/433 (55%), Positives = 312/433 (72%), Gaps = 17/433 (3%)
Query: 1 MLLLVILTNLLTIYIFTGPSFSLKLNSYSNQLTLPLLNSTVL-LSEFSSTKIELAASHGI 59
++ LV++T + ++F+G S + + + S VL + + + + L+ASH
Sbjct: 23 VIFLVVVTATASAFLFSGGSSA----------NVRVWKSGVLSIRDRNIMQYALSASHDE 72
Query: 60 IAELQQQLNSTNLLVQALLIELTREFVHPNEKVSGINLSAVMSKLSDDLTVGLPDEVKLA 119
+ +LQ +L N LV+ LL + +E +G + + L EVKLA
Sbjct: 73 LVQLQDRLAKANSLVETLLGKQ----ADASEVATGAEEEQKLLATDELWRRRLTGEVKLA 128
Query: 120 VGPHKLPLGYSPRMGSDEVIAPVGAGCSKFHDELLKYMTYDIGGECPVDDVFAQRLMLKG 179
VGPHKLPLG++ +GSDE+ +G C +F +EL KYM Y+ GGECP D+ F QRLMLKG
Sbjct: 129 VGPHKLPLGFTHNLGSDELFPTLGQACHRFPEELEKYMNYEPGGECPSDESFGQRLMLKG 188
Query: 180 CEPLPRRRCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKAPGFFD 239
CEPLPRRRC+P+SP YV+PT +P SLW P +TSI+WD Y+CK+Y CL +R K G +D
Sbjct: 189 CEPLPRRRCRPRSPKGYVDPTPLPASLWALPPDTSIVWDAYTCKNYSCLENRGKISGHYD 248
Query: 240 CKDCFDLQ--GREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER 297
CKDCFDL+ GREK RWL D+G L Y ID VL+ +P GT+RIGLDIGGG+GTFAARMRER
Sbjct: 249 CKDCFDLRAGGREKVRWLSDDGALAYSIDAVLATRPTGTVRIGLDIGGGSGTFAARMRER 308
Query: 298 NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSML 357
VTI+TTS+N D PFN+FIASRGL+SMH+SV+ RLPFF+ TLD+VHSMHVLSNWIPD+ML
Sbjct: 309 GVTIVTTSMNFDAPFNNFIASRGLLSMHLSVAHRLPFFDGTLDVVHSMHVLSNWIPDAML 368
Query: 358 EFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMKLDRGVKKN 417
EFTL+DI+R+LRPGG+FWLD FFC G+Q+N TY PM DR+GF K+RWN G K+DRG++ +
Sbjct: 369 EFTLFDIHRVLRPGGLFWLDHFFCLGTQMNTTYAPMFDRVGFNKVRWNAGRKMDRGIEMD 428
Query: 418 EWYFSAVLEKPMT 430
EWY SA+LEKP T
Sbjct: 429 EWYLSALLEKPKT 441
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357143173|ref|XP_003572828.1| PREDICTED: uncharacterized protein LOC100827692 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 238/430 (55%), Positives = 308/430 (71%), Gaps = 17/430 (3%)
Query: 8 TNLLTIYIFTGPSFSLKLNSYSNQLTLPLLNSTVL-LSEFSSTKIELAASHGIIAELQQQ 66
TN+ ++ +F+G S ++ + + T+ + NS L + + + LAASH + L
Sbjct: 33 TNIASVLLFSGRSSTVGVCLGEHDWTVRIGNSGKLSFRDLNIMEYALAASHAELVHLHDH 92
Query: 67 LNSTNLLVQALLIELTREFVHPNEKVSGINLSAVMSKLSDDLTVG-----LPDEVKLAVG 121
L+ N LV+ALL + + N++A + T G L E+KLAVG
Sbjct: 93 LDKANTLVEALL----------GNRANASNMAATKVEQKQAPTEGFWQRKLTGELKLAVG 142
Query: 122 PHKLPLGYSPRMGSDEVIAPVGAGCSKFHDELLKYMTYDIGGECPVDDVFAQRLMLKGCE 181
PHKLP G++ +GSDE+ +G C +F DEL +YM Y GECP D+ AQ+LMLKGCE
Sbjct: 143 PHKLPFGFTRNLGSDELFPAMGQACHRFQDELEQYMNYKPLGECPSDEWSAQQLMLKGCE 202
Query: 182 PLPRRRCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKAPGFFDCK 241
PLPRRRC+P+SP+ YVEPT +P SLW P +TSI+WD Y+CK+Y CL++R K G +DCK
Sbjct: 203 PLPRRRCRPRSPLGYVEPTPLPASLWTIPPDTSILWDAYTCKNYSCLVNRGKTKGHYDCK 262
Query: 242 DCFDL-QGREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVT 300
DCFDL GREK RWL +G LDY ID VL+ +P GT+RIGLDIGGG+GTFAARMRER VT
Sbjct: 263 DCFDLLGGREKDRWLHGDGALDYSIDAVLATRPNGTVRIGLDIGGGSGTFAARMREREVT 322
Query: 301 IITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFT 360
++TTS+N DGPFNSFIASRGL+ +++S+ RLPFF+ TLDIVHSMHVLSNWIPD +LEFT
Sbjct: 323 VVTTSMNFDGPFNSFIASRGLVPIYLSIGHRLPFFDGTLDIVHSMHVLSNWIPDMILEFT 382
Query: 361 LYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMKLDRGVKKNEWY 420
L+DIYR+LRPGG+FWLD FFC G+Q+N TYVPM +R+GF K+ WN G KLDRG++ +EWY
Sbjct: 383 LFDIYRVLRPGGLFWLDHFFCLGNQMNTTYVPMFNRVGFNKVWWNAGRKLDRGIELDEWY 442
Query: 421 FSAVLEKPMT 430
SA+LEKP T
Sbjct: 443 LSALLEKPRT 452
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357167664|ref|XP_003581273.1| PREDICTED: uncharacterized protein LOC100830081 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 222/431 (51%), Positives = 309/431 (71%), Gaps = 13/431 (3%)
Query: 1 MLLLVILTNLLTIYIFTGPSFSLKLNSYSNQLTLPLLNSTVLLSEFSSTKIELAASHGII 60
ML +VI+TN ++Y+F+G S SL L + + L +ST LL + ++T+ L+ + +
Sbjct: 44 MLFVVIVTNFFSVYLFSGASLSLNLPESAPSIHL--WDSTALLRDLNATRDALSLARAEL 101
Query: 61 AELQQQLNSTNLLVQALLIELTREFVHPNEKVSGINLSAVMSKLSDDLTVGLPDEVKLAV 120
+ ++ Q +++LL+ ++L +L VH + + + + + S E+KLA+
Sbjct: 102 SLVRAQCGTSSLLLDSVLSKLGA--VHGEDAPAAKDFNGWPEEPSG--------ELKLAI 151
Query: 121 GPHKLPLGYSPRMGSDEVIAPVGAGCSKFHDELLKYMTYDIGGECPVDDVFAQRLMLKGC 180
PH+LP G+S G+DE+ +G C F ++L KYMTY+ CP D+ A +L LKGC
Sbjct: 152 EPHRLPHGFSVNFGTDELFPGLGFACRNFQEDLTKYMTYNASAACPDDEALALQLTLKGC 211
Query: 181 EPLPRRRCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKA-PGFFD 239
EPLPRRRCKP+SP YVEP +P+SLW PA+T++ W PY+CK+Y CL+DR ++ G +D
Sbjct: 212 EPLPRRRCKPRSPARYVEPKPLPESLWSIPADTTVNWTPYTCKNYTCLVDRARSRGGSYD 271
Query: 240 CKDCFDLQGREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNV 299
CKDCFDL G+E+ RWL DNG + ID VL +P GT+RIGLDIGGGTGTFAARMRERNV
Sbjct: 272 CKDCFDLAGKERRRWLTDNGGPGFSIDGVLRSRPPGTVRIGLDIGGGTGTFAARMRERNV 331
Query: 300 TIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEF 359
T++TT+L+LD PFN F+ASRGL+ + +S++QRLPF + LDIVHSM VLSN +PD++LEF
Sbjct: 332 TVVTTTLDLDAPFNRFVASRGLLPLQLSLAQRLPFADGVLDIVHSMKVLSNSVPDAVLEF 391
Query: 360 TLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMKLDRGVKKNEW 419
L+D+YR+LRPGG+FWLD FFC G+QLN TYVP++DR+GF++LRW KLD G ++NEW
Sbjct: 392 ALFDVYRVLRPGGVFWLDHFFCLGTQLNATYVPIIDRVGFRRLRWKESRKLDLGAERNEW 451
Query: 420 YFSAVLEKPMT 430
Y SA+LEKPMT
Sbjct: 452 YISALLEKPMT 462
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242077967|ref|XP_002443752.1| hypothetical protein SORBIDRAFT_07g001350 [Sorghum bicolor] gi|241940102|gb|EES13247.1| hypothetical protein SORBIDRAFT_07g001350 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 240/448 (53%), Positives = 309/448 (68%), Gaps = 22/448 (4%)
Query: 1 MLLLVILTNLLTIYIFTGPSFSLKLNSYSNQ-LTLPLLNSTVLLSEFSSTKIELAASHGI 59
MLLL++LTN +I IF+G +L + + + S LL E + T + +AASH
Sbjct: 43 MLLLLVLTNAASILIFSGAGTALHAHVRRHYPAVVHAWPSAKLLRELNVTGLAMAASHAE 102
Query: 60 IAELQQQLNSTNLLVQALLIELTREFVHPNEKVSGINLSAVMSKLSDDLTVGLPDEVKLA 119
+ +L +L + N +++A+L + H E A L L DE+KLA
Sbjct: 103 VVDLSGRLTAANKVLEAILG--GKAAKHDMEAAREEQREAAAGGLWQQRDQHLGDELKLA 160
Query: 120 VGPHKLP------LGYSPRMGSDEVIAP-VGAGCSKFHDELLKYMTYDIGGECPVDDVFA 172
VGPHKLP G G DEV+ P +G C ++ DEL +YM Y +GGECP D+ A
Sbjct: 161 VGPHKLPHRRLMIGGAGGGGGGDEVMFPALGQACHRYRDELERYMNYTVGGECPSDEASA 220
Query: 173 QRLMLKGCEPLPRRRCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRK 232
QRLMLKGCEPLPRRRC+P++P YVEPT +P SLW P +TSI+WD Y+CK+Y CL++R
Sbjct: 221 QRLMLKGCEPLPRRRCRPRTPAGYVEPTPLPASLWAIPPDTSIVWDAYTCKTYGCLVNRG 280
Query: 233 KAPGFFDCKDCFDLQGREKSRWLI------------DNGKLDYGIDQVLSMKPLGTIRIG 280
KA G +DCKDCFDL+GREK RW+ + LDY ID VL + P G++RIG
Sbjct: 281 KAKGSYDCKDCFDLRGREKHRWVRRRKGEKDDDADDERNSLDYTIDGVLGLLPRGSVRIG 340
Query: 281 LDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLD 340
+DIGGG+GTFAARMRER VT++TTS+N DGPFNSFIASRGL+ MH+SV+ RLPF + TLD
Sbjct: 341 VDIGGGSGTFAARMRERGVTVVTTSMNFDGPFNSFIASRGLVPMHLSVASRLPFSDGTLD 400
Query: 341 IVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFK 400
+VHSMHVLS+WIPD+MLE L+D+YR+LRPGG+FWLD FFC G+QL+ TY+PM DRIGF
Sbjct: 401 LVHSMHVLSSWIPDAMLESALFDVYRVLRPGGVFWLDHFFCLGTQLDATYLPMFDRIGFN 460
Query: 401 KLRWNVGMKLDRGVKKNEWYFSAVLEKP 428
KLRWN G KLDRG++ +EWY SA+L+KP
Sbjct: 461 KLRWNAGRKLDRGIQMDEWYISALLQKP 488
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | ||||||
| TAIR|locus:2079812 | 463 | AT3G05390 [Arabidopsis thalian | 0.718 | 0.667 | 0.437 | 1.1e-74 | |
| TAIR|locus:2164491 | 414 | AT5G40830 [Arabidopsis thalian | 0.818 | 0.850 | 0.407 | 3e-69 | |
| TAIR|locus:2125028 | 659 | AT4G01240 [Arabidopsis thalian | 0.718 | 0.468 | 0.436 | 6.3e-69 | |
| TAIR|locus:2086543 | 410 | AT3G27230 [Arabidopsis thalian | 0.813 | 0.853 | 0.406 | 4e-67 | |
| TAIR|locus:2019312 | 378 | AT1G29790 [Arabidopsis thalian | 0.632 | 0.719 | 0.397 | 3.3e-56 | |
| TAIR|locus:2041031 | 611 | AT2G43200 [Arabidopsis thalian | 0.4 | 0.281 | 0.304 | 3.8e-06 | |
| TAIR|locus:2195955 | 655 | AT1G77260 [Arabidopsis thalian | 0.388 | 0.254 | 0.280 | 1.5e-05 | |
| TAIR|locus:2134756 | 600 | ERD3 "early-responsive to dehy | 0.241 | 0.173 | 0.336 | 7.6e-05 | |
| TAIR|locus:2202805 | 616 | AT1G26850 [Arabidopsis thalian | 0.416 | 0.290 | 0.273 | 7.9e-05 | |
| TAIR|locus:2063078 | 589 | AT2G40280 [Arabidopsis thalian | 0.420 | 0.307 | 0.255 | 0.00016 |
| TAIR|locus:2079812 AT3G05390 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 727 (261.0 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 139/318 (43%), Positives = 207/318 (65%)
Query: 112 LPDEVKLAVGPHKLPLGYSPRMGSDEVIAPVGAGCSKFHDELLKYMTYDIGGECPVDDVF 171
L +E++ + P + +G G++ V +G C+ EL KYM YD+G C D
Sbjct: 150 LIEEIRQYITPKENRVGKINMFGTERVYNTIGHACALMKMELEKYMDYDVGAYCDDDWNL 209
Query: 172 AQRLMLKGCEPLPRRRCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDR 231
AQ+LML GC+PLPRRRC ++ + Y +P + +SLW+ P + ++ W Y C+++ CL +
Sbjct: 210 AQKLMLNGCDPLPRRRCLTRASMTYQKPYPINESLWKLPDDRNVRWGNYQCRNFACLSSK 269
Query: 232 KKAPGFFDCKDCFDLQGREKSRWLIDNGKL-DYGIDQVLSMKPLGTIRIGLDIGGGTGTF 290
G+ C CF+++ +EK +W+ ++ L D+ I+ VL +KP IRIGLD G GTGTF
Sbjct: 270 NPKRGYTKCSGCFEME-KEKDKWVKNSSLLVDFMIEDVLRVKP-SEIRIGLDYGVGTGTF 327
Query: 291 AARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSN 350
AARMRE+NVTI+TT+LNL PFN IA RGLI ++IS++QRLPFF+NT+D++H+ ++
Sbjct: 328 AARMREKNVTIVTTALNLGAPFNEMIALRGLIPLYISLNQRLPFFDNTMDMIHTTGLMDG 387
Query: 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMKL 410
WI +++F LYD R+LRPGG+ W+DRFFC L++ Y+ M + +KK +W + K
Sbjct: 388 WIDLLLMDFVLYDWDRVLRPGGLLWIDRFFCKKKDLDD-YMYMFLQFRYKKHKWAISPK- 445
Query: 411 DRGVKKNEWYFSAVLEKP 428
K+E Y SA+LEKP
Sbjct: 446 ----SKDEVYLSALLEKP 459
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| TAIR|locus:2164491 AT5G40830 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 149/366 (40%), Positives = 219/366 (59%)
Query: 67 LNSTNL-LVQALLIELTREFVHPNEKVSGINLSAVMSKLSDDLTVGLPDEVKLAVGPHKL 125
L+S N+ LV L + RE + ++ + + + D +P E+KL + H+L
Sbjct: 56 LHSNNVSLVSQHLSLILREIDSSHHTLTQMEKQIIGYESLDLSQQEVPQELKLFLQQHQL 115
Query: 126 PLGYSPRMGSDEVIAPVGAGCSKFHDELLKYMTYDIGGECPVDDVFAQRLMLKGCEPLPR 185
PLG R G +++A VG C D L +YM+Y++ +CP D AQ+L+L+ CEPLPR
Sbjct: 116 PLGKDSRTGITQMVASVGHSCEMSLDLLSQYMSYNVFEKCPDDWSLAQKLILRACEPLPR 175
Query: 186 RRCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKAPGFFDCKDCFD 245
RRC K+ V+ PDSLW +S+ W CKS++CL +K + DC CFD
Sbjct: 176 RRCLAKT-VHKPGLALFPDSLWRPVGNSSVNWSGLGCKSFECLKGKKLSR---DCVGCFD 231
Query: 246 LQ-GREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITT 304
L EK R++ NGK D+ ID VL + G IRIG DI G+GTFAARM E+NV II+
Sbjct: 232 LATSHEKDRFVKVNGKTDFLIDDVLDLGD-GKIRIGFDISSGSGTFAARMAEKNVNIISN 290
Query: 305 SLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS--MLEFTLY 362
+LN+D PF+ FIA+RG+ + +S+ QRLPF++N D++H+ + L + + LEF ++
Sbjct: 291 TLNIDAPFSEFIAARGIFPLFMSLDQRLPFYDNVFDLIHASNGLDLAVSNKPEKLEFLMF 350
Query: 363 DIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMKLDRGVKKNEWYFS 422
D+ R+L+PGG+FWLD F+C + +++R G+KKL+W VG K D V + S
Sbjct: 351 DLDRILKPGGLFWLDNFYCGNDEKKRVLTRLIERFGYKKLKWVVGEKTDAEV-----FLS 405
Query: 423 AVLEKP 428
AVL+KP
Sbjct: 406 AVLQKP 411
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| TAIR|locus:2125028 AT4G01240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
Identities = 142/325 (43%), Positives = 202/325 (62%)
Query: 114 DEVK--LAVGPHKLPLGYSPRMGSDEVIAPVGAGCSKFHDELLKYMTYDIGGECPVDDVF 171
+E+K + + P++L G MG++ +G C +L +YM YD+G C D
Sbjct: 336 EEIKKYIKIKPNRL--GKQNFMGANGTFTSIGHACFAMKKDLEEYMDYDVGEICNDDWRL 393
Query: 172 AQRLMLKGCEPLPRRRCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDR 231
AQ+LM+ GC+PLPRRRC + P Y +P + +SLW+ P ++ W Y CK++ CL
Sbjct: 394 AQKLMVHGCDPLPRRRCFSRGPQLYHKPFPINESLWKLPDNRNVRWGQYKCKNFACLASN 453
Query: 232 KKA-PGFFDCKDCFDLQGREKSRWL----ID---NGKLDYGIDQVLSMKPLGTIRIGLDI 283
A GFF C DCF+L E RWL ID N D+ I +VL +KP G IRIGLD
Sbjct: 454 TTARKGFFKCTDCFNLTHHESPRWLNRGEIDPETNQTADFSIAEVLEIKP-GEIRIGLDF 512
Query: 284 GGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVH 343
GTGTFAARMRE+NVTI++ ++NL PFN IA RGL+ ++++V+QRLPFF++TLD++H
Sbjct: 513 SIGTGTFAARMREQNVTIVSATINLGAPFNEMIALRGLVPLYLTVNQRLPFFDSTLDMIH 572
Query: 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403
+ L WI +L+F L+D R+LRPGG+ W+D FFC +++ Y+ + ++K +
Sbjct: 573 TTRFLDGWIDLILLDFVLFDWDRVLRPGGLLWIDGFFCLKEDVSD-YMEAFKALRYRKHK 631
Query: 404 WNVGMKLDRGVKKNEWYFSAVLEKP 428
W V K D+ K E +FSAVLEKP
Sbjct: 632 WVVVPKKDKDDK--EVFFSAVLEKP 654
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| TAIR|locus:2086543 AT3G27230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
Identities = 147/362 (40%), Positives = 211/362 (58%)
Query: 68 NSTNLLVQALLIELTREFVHPNEKVSGINLSAVMSKLSDDLTVGLPDEVKLAVGPHKLPL 127
N+ +L+ Q L + L RE K++ + + + D + E+KL + H+LPL
Sbjct: 59 NNISLVSQHLSLIL-REIDSSQRKLAQMEKQMLGYESIDISRPNIVPELKLFLQRHQLPL 117
Query: 128 GYSPRMGSDEVIAPVGAGCSKFHDELLKYMTYDIGGECPVDDVFAQRLMLKGCEPLPRRR 187
G R G E+++ VG C K D L +YM+Y + CP D Q+L+L+ CEPLPRRR
Sbjct: 118 GKDSRTGITEMVSSVGHSCGKSTDLLSQYMSYKVFDRCPDDWSLGQKLILRACEPLPRRR 177
Query: 188 CKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKAPGFFDCKDCFDLQ 247
C K+ V + + PDSLW + S+ W CKS+ CL +K + +C CFDL
Sbjct: 178 CLAKT-VQKQDLSKSPDSLWRSVSNKSVNWSGLGCKSFDCLKGKKLSK---ECVGCFDL- 232
Query: 248 GREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLN 307
G EK R++ GK D+ ID VL + G IRIG DI GG+GTFAARM E+NVT+IT +LN
Sbjct: 233 GVEKDRFVKVKGKNDFLIDDVLGLGS-GKIRIGFDISGGSGTFAARMAEKNVTVITNTLN 291
Query: 308 LDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRL 367
PF+ FIA+RGL + +S+ R PF +N D++H+ L LEF ++D+ R+
Sbjct: 292 NGAPFSEFIAARGLFPLFLSLDHRFPFLDNVFDLIHASSGLDVEGKAEKLEFLMFDLDRV 351
Query: 368 LRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMKLDRGVKKNEWYFSAVLEK 427
L+P G+FWLD F+C + + M++R G+KKL+W +G K D V Y SAVL+K
Sbjct: 352 LKPRGLFWLDNFYCANDEKKKELTRMIERFGYKKLKWVIGEKADAQV-----YLSAVLQK 406
Query: 428 PM 429
P+
Sbjct: 407 PV 408
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| TAIR|locus:2019312 AT1G29790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 117/294 (39%), Positives = 183/294 (62%)
Query: 139 IAPVGAGCSKFHDELLKYMTYDIGGECPVDDVFAQRLMLKGCEPLPRRRCKPKSPVNYVE 198
++P+ + C + D L +YM Y CP D ++L+L+GC PLPRRRC ++P N
Sbjct: 102 LSPIASACHNYPDLLHEYMNYTPFSLCPSDTDLVEKLILRGCHPLPRRRCFSRTPRN--- 158
Query: 199 PTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKAPGFFDCKDCFDLQ-GREKSRWLID 257
P+ DS KP E++++W YSCKS+ CLI + F D FDL + KS++
Sbjct: 159 PS---DS---KP-ESNVLWSYYSCKSFDCLITK-----FSDLG--FDLSLEKSKSQFSAY 204
Query: 258 NGKLDYGIDQVLSM-KPLGTI-RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSF 315
+LD I Q+L + K ++ R+G+D+GGGTG+FAA M+ RNVT++TT++N + P++
Sbjct: 205 KSELDLPISQLLQIAKSANSVLRLGIDVGGGTGSFAAAMKARNVTVLTTTMNFNAPYSEA 264
Query: 316 IASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFW 375
+A RGL+ +H+ + QRLP F+ +D+V ++ WIP +++EF +D+ R+LR GG W
Sbjct: 265 VAMRGLVPLHVPLQQRLPVFDGVVDLVRCGRAVNRWIPVTVMEFFFFDLDRILRGGGYLW 324
Query: 376 LDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMKLDRGVKKNEWYFSAVLEKPM 429
LDRFF L Y PM+ ++G+KK++W V K D K E + +A+L+KP+
Sbjct: 325 LDRFFSKKVDLENVYAPMIGKLGYKKVKWAVANKADS--KHGEVFLTALLQKPV 376
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| TAIR|locus:2041031 AT2G43200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 60/197 (30%), Positives = 89/197 (45%)
Query: 187 RCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKAPGFFDCK-DCFD 245
RC P Y P P+S K A W + ++ L + KK + + D F
Sbjct: 134 RCLVPKPTGYKTPFPWPES--RKYA-----W--FRNVPFKRLAELKKTQNWVRLEGDRFV 184
Query: 246 LQGREKSRWLIDNGKLDYGIDQVLSMKPL--GTIRIGLDIGGGTGTFAARMRERNVTIIT 303
G S G DY +D +LS+ PL G+IR LDIG G +F A + N I+T
Sbjct: 185 FPGGGTS---FPGGVKDY-VDVILSVLPLASGSIRTVLDIGCGVASFGAFLL--NYKILT 238
Query: 304 TSL---NLDGPFNSFIASRGLISM-HISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEF 359
S+ ++ F RGL +M + + +LP+ + D+VH L NW L
Sbjct: 239 MSIAPRDIHEAQVQFALERGLPAMLGVLSTYKLPYPSRSFDMVHCSRCLVNWTSYDGLY- 297
Query: 360 TLYDIYRLLRPGGIFWL 376
L ++ R+LRP G +W+
Sbjct: 298 -LMEVDRVLRPEG-YWV 312
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| TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 134 (52.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 55/196 (28%), Positives = 91/196 (46%)
Query: 249 REKSRWLIDNGKLDY--G----IDQVLSMKP---LGT-IRIGLDIGGGTGTFAARMRERN 298
REK +++ G + G +DQ+ M P G+ R+ LDIG G +F A + +RN
Sbjct: 229 REKDKFVFPGGGTQFIHGADQYLDQISQMIPDITFGSRTRVALDIGCGVASFGAFLMQRN 288
Query: 299 VTIITTSLNLDGPFNS--FIASRGLISM-HISVSQRLPFFENTLDIVHSMHVLSNWIPDS 355
T ++ + D N F RG+ +M + ++RL + + +++H NW D
Sbjct: 289 TTTLSVAPK-DVHENQIQFALERGVPAMVAVFATRRLLYPSQSFEMIHCSRCRINWTRDD 347
Query: 356 MLEFTLYDIYRLLRPGGIF-WLDR-FFCFGSQLNETYVPMLDRIGFKKLRWNVGMKLDRG 413
+ L ++ R+LR GG F W + + L E + MLD ++ W +
Sbjct: 348 GI--LLLEVNRMLRAGGYFVWAAQPVYKHEDNLQEQWKEMLDLTN--RICWEL------- 396
Query: 414 VKKNEWYFSAVLEKPM 429
+KK E Y AV KP+
Sbjct: 397 IKK-EGYI-AVWRKPL 410
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| TAIR|locus:2134756 ERD3 "early-responsive to dehydration 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 39/116 (33%), Positives = 59/116 (50%)
Query: 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSL----NLDGPFNSFIASRGL 321
D + MK GTIR +D G G ++ + +R I+T SL N + F RG+
Sbjct: 183 DLIPEMKD-GTIRTAIDTGCGVASWGGDLLDRG--ILTVSLAPRDNHEAQVQ-FALERGI 238
Query: 322 IS-MHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376
+ + I +QRLPF N+ D+ H L W + L +++R+LRPGG FW+
Sbjct: 239 PAILGIISTQRLPFPSNSFDMAHCSRCLIPWTEFGGVY--LLEVHRILRPGG-FWV 291
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| TAIR|locus:2202805 AT1G26850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 56/205 (27%), Positives = 87/205 (42%)
Query: 180 CEPLPRR-RCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKAPGFF 238
C P + C +P YV P + W K + + PY+ Y+ L K +
Sbjct: 120 CAPENEKLHCLIPAPKGYVTPFS-----WPKSRD----YVPYANAPYKALTVEKAIQNWI 170
Query: 239 DCK-DCFDLQGREKSRWLIDNGKLDYGIDQVLSMKPL--GTIRIGLDIGGGTGTFAARMR 295
+ D F G G Y IDQ+ S+ P+ GT+R LD G G ++ A +
Sbjct: 171 QYEGDVFRFPGGGTQ---FPQGADKY-IDQLASVIPMENGTVRTALDTGCGVASWGAYLW 226
Query: 296 ERNVTIITTSLNLDGPFN-SFIASRGLISMHISV--SQRLPFFENTLDIVHSMHVLSNW- 351
RNV ++ + F RG+ ++ I V + +LP+ D+ H L W
Sbjct: 227 SRNVRAMSFAPRDSHEAQVQFALERGVPAV-IGVLGTIKLPYPTRAFDMAHCSRCLIPWG 285
Query: 352 IPDSMLEFTLYDIYRLLRPGGIFWL 376
D M L ++ R+LRPGG +W+
Sbjct: 286 ANDGMY---LMEVDRVLRPGG-YWI 306
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| TAIR|locus:2063078 AT2G40280 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 51/200 (25%), Positives = 93/200 (46%)
Query: 182 PLPRRRCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKAPGFFDCK 241
P P +C P NY P VP W P +IW Y + L++ KK + +
Sbjct: 118 PEPSPKCLLPLPDNYKPP--VP---W--PKSRDMIW--YDNVPHPKLVEYKKEQNWVKKE 168
Query: 242 DCFDL--QGREKSRWLIDNGKLDYGIDQVL-SMKPLGTIRIGLDIGGGTGTFAARMRERN 298
F + G + ++ + + +++ I++ L S+K IR+ LD+G G +F + +++
Sbjct: 169 GEFLVFPGGGTQFKFGVTH-YVEF-IEKALPSIKWGKNIRVVLDVGCGVASFGGSLLDKD 226
Query: 299 VTIITTSLNLDGPFN-SFIASRGL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSM 356
V ++ + + F RG+ ++ + +Q+L F N D++H +W D
Sbjct: 227 VITMSFAPKDEHEAQIQFALERGIPATLSVIGTQQLTFPSNAFDLIHCARCRVHWDADGG 286
Query: 357 LEFTLYDIYRLLRPGGIF-W 375
L ++ R+LRPGG F W
Sbjct: 287 KP--LLELNRVLRPGGFFIW 304
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.86.249.1 | hypothetical protein (386 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 430 | |||
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-10 | |
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 2e-09 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 9e-06 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 1e-05 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 0.003 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 0.003 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-10
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 281 LDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLD 340
LD+G GTG A + R +T ++L + R + ++ LPF + + D
Sbjct: 1 LDVGCGTGLLAEALARRGGARVT-GVDLSPEMLALARKRAPRKFVVGDAEDLPFPDESFD 59
Query: 341 IVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376
+V S VL + +PD E L +I R+L+PGG +
Sbjct: 60 VVVSSLVL-HHLPD--PERALREIARVLKPGGKLVI 92
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Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 23/130 (17%)
Query: 258 NGKLDYGIDQVLSMKPL----GTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFN 313
+G Y ID + M P G +R LD+G G +F A + R+V +T S P +
Sbjct: 96 HGADAY-IDFLAQMIPDIAWGGRVRTALDVGCGVASFGAYLLSRDV--LTMSF---APKD 149
Query: 314 S------FIASRGLISMHISV--SQRLPFFENTLDIVHSMHVLSNW-IPDSMLEFTLYDI 364
F RG+ +M + V ++RLP+ + D+ H L W D +L L ++
Sbjct: 150 VHEAQVQFALERGVPAM-LGVLGTRRLPYPSRSFDMAHCSRCLIPWHANDGIL---LLEV 205
Query: 365 YRLLRPGGIF 374
R+LRPGG F
Sbjct: 206 DRVLRPGGYF 215
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This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 9e-06
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 17/97 (17%)
Query: 280 GLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFEN 337
LDIG GTG +RER +VT + S F+ F A
Sbjct: 26 VLDIGCGTGILLRLLRERGFDVTGVDPSPAAVLIFSLFDA------------PDPAVLAG 73
Query: 338 TLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIF 374
D++ + VL +PD + LL+PGG+
Sbjct: 74 KYDLITAFEVL-EHLPDPPALLQ--QLRELLKPGGVL 107
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This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-05
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 281 LDIGGGTGTFAARMRERNVTIITTSLNLDGPF-----NSFIASRGLISMHISVSQRLPFF 335
LDIG GTGT + E + T +++ A L ++ + +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 336 E--NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIF 374
+ D+V + +VL + D L ++ RLL+PGG+
Sbjct: 61 LDPGSFDVVVASNVLH-HLAD--PRAVLRNLRRLLKPGGVL 98
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Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 9/98 (9%)
Query: 281 LDIGGGTGTFAARMRER-----NVTIITTSLN-LDGPFNSFIASRGLISMHISVSQRLPF 334
LD+G G G A + R V I S L + + LPF
Sbjct: 24 LDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPF 83
Query: 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGG 372
+ + D V S VL + D L +I R+LRPGG
Sbjct: 84 PDGSFDAVRSDRVLQ-HLED--PARALAEIARVLRPGG 118
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Length = 241 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.003
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 281 LDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFI--ASRGLISMHISVSQ----RLPF 334
LD+G GTG A + + T +++ A+ L++ ++ V + LP
Sbjct: 3 LDLGCGTGALALALASGPGARV-TGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61
Query: 335 FE-NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381
+ D++ S L + + + F L + RLL+PGG+ L
Sbjct: 62 EADESFDVIISDPPLH-HLVEDLARF-LEEARRLLKPGGVLVLTLVLA 107
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There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.73 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.66 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.66 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.65 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.64 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.6 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.59 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.59 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.58 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.55 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.55 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.54 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.53 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.53 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.51 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.5 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.5 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.48 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.47 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.47 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.46 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.46 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.42 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.42 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.41 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.41 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.41 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.41 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.41 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.41 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.4 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.38 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.38 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.38 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.36 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.36 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.36 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.35 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.35 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.35 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.35 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.34 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.31 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.3 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.29 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.29 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.28 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.28 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.27 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.27 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.26 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.25 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.25 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.25 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.24 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.24 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.23 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.23 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.23 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.23 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.23 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.23 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.22 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.21 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.2 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.18 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.17 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.16 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.15 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.15 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.14 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.14 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.13 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.13 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.12 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.12 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.11 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.11 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.1 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.09 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.09 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.09 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.07 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.07 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.07 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.05 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.04 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.03 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.03 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.02 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.01 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.99 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.99 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.99 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.98 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.98 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.98 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.97 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.96 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.95 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.94 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.94 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.94 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.93 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.93 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.93 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.9 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.9 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.88 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.87 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.86 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.86 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.85 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.85 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.84 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.83 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.8 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.79 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.78 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.77 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.77 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.74 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.74 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.73 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.72 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.7 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.66 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.65 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.64 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.62 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.62 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.62 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.61 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.61 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.59 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.56 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.56 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.56 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.54 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.53 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.53 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.49 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.49 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.47 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.46 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.44 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.44 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.43 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.42 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.41 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.38 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.37 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.37 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.36 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.33 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.31 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.27 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.25 | |
| PLN02366 | 308 | spermidine synthase | 98.24 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.22 | |
| PLN02476 | 278 | O-methyltransferase | 98.18 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.17 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.16 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.16 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.16 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.15 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.14 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.13 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.12 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.12 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.1 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.1 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.08 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.04 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.03 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.02 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.98 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.96 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.94 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.94 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.93 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.84 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.82 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.81 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.8 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.8 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.79 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.79 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.79 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.76 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.74 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.74 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.58 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.58 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.58 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.55 | |
| PLN02823 | 336 | spermine synthase | 97.55 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.54 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.51 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.5 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.5 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.5 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.43 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.4 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.39 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.36 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.36 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.26 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.19 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.19 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.17 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.1 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.09 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.08 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.02 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.01 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 96.98 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.95 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.91 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.89 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.85 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.85 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.73 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.72 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 96.69 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.65 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.59 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.55 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.55 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.49 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.45 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 96.36 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.29 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 96.22 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.18 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.14 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 96.13 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.09 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.04 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.93 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 95.91 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 95.86 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 95.77 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 95.33 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 95.28 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 95.17 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 95.12 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 95.03 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 94.82 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.81 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 94.77 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 94.41 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 94.34 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 94.24 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 94.15 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 93.34 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 93.26 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 93.14 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 93.12 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.06 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 93.03 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 92.75 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 92.56 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 92.4 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 92.29 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 91.84 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 91.34 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 91.28 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 91.11 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 91.1 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 90.45 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 89.69 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 89.49 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 89.36 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 88.87 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 88.77 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 87.98 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 87.61 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 87.43 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 86.95 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 86.73 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 86.25 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 84.57 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 84.25 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 83.1 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 83.0 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 82.71 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 82.62 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 81.84 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 81.24 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 80.83 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 80.7 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 80.47 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 80.11 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=309.70 Aligned_cols=210 Identities=31% Similarity=0.484 Sum_probs=170.6
Q ss_pred HHHHcCCCCC-CCCccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccchhhhhhhccCCCCccCCccccccccccc
Q 043503 174 RLMLKGCEPL-PRRRCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKAPGFFDCKDCFDLQGREKS 252 (430)
Q Consensus 174 ~l~~~~c~pl-prrrC~~~~p~~y~~P~pwP~s~w~~p~d~~~~W~~y~c~~~~~l~~~k~~~g~~~C~~cFd~~~~e~~ 252 (430)
+.+||||||. ++.+|++|+|++|+.|+|||+|+ +++| |+|++|+.|++.|..|+| +..+++
T Consensus 22 ~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SR-------d~iW--~~Nvph~~L~~~K~~qnW---------v~~~gd 83 (506)
T PF03141_consen 22 EHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSR-------DYIW--YANVPHTKLAEEKADQNW---------VRVEGD 83 (506)
T ss_pred cEeeccCcCCCCCCccccCCCccCCCCCCCCccc-------ceee--ecccCchHHhhhcccccc---------eeecCC
Confidence 5688999984 66699999999999999999998 8999 899999999999999999 566777
Q ss_pred ceeecCCchhH------HHHHHHcc----CCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEec-CCChhHHHHHHhcCC
Q 043503 253 RWLIDNGKLDY------GIDQVLSM----KPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSL-NLDGPFNSFIASRGL 321 (430)
Q Consensus 253 ~~~~~~~~~~~------~id~lL~~----~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdi-D~s~~~le~a~~rg~ 321 (430)
.+.|+++...| +++++... ..++.+|++||+|||+|+|+++|.++++.++.+.+ |.++...++|.+||+
T Consensus 84 ~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGv 163 (506)
T PF03141_consen 84 KFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGV 163 (506)
T ss_pred EEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCc
Confidence 77777655443 35544433 35689999999999999999999999998877655 355678899999998
Q ss_pred eeEEEc-ccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc---C---cHHHHHHHH
Q 043503 322 ISMHIS-VSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS---Q---LNETYVPML 394 (430)
Q Consensus 322 i~~~~~-d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~---~---~~~~~~~ll 394 (430)
..++.. ..++|||++++||+|||++|+..|.+++ ..+|.|++|+|||||+||++..-.... + ....+..+.
T Consensus 164 pa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~ 241 (506)
T PF03141_consen 164 PAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLA 241 (506)
T ss_pred chhhhhhccccccCCccchhhhhcccccccchhcc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHH
Confidence 655543 4799999999999999999999999874 579999999999999999987665421 1 223466667
Q ss_pred HHcCCEEEE
Q 043503 395 DRIGFKKLR 403 (430)
Q Consensus 395 ~~~Gfk~l~ 403 (430)
+..-++.+.
T Consensus 242 ~~lCW~~va 250 (506)
T PF03141_consen 242 KSLCWKKVA 250 (506)
T ss_pred HHHHHHHhe
Confidence 777766554
|
; GO: 0008168 methyltransferase activity |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.4e-17 Score=154.91 Aligned_cols=101 Identities=23% Similarity=0.390 Sum_probs=88.9
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcCC------eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGL------ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~------i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||+|||||.++..+++. ..+|+++ |+++.|++.++++-. +.|+++|++.|||+|++||+|.+++.++
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g~g~v~~~--D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVGTGEVVGL--DISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcCCceEEEE--ECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 45699999999999999998 3678887 888999999988721 8899999999999999999999999996
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
+ +++ .+.+|+|++|||||||.+++.+|....
T Consensus 131 n-v~d--~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 131 N-VTD--IDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred c-CCC--HHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 6 666 899999999999999999988877543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-16 Score=125.64 Aligned_cols=91 Identities=35% Similarity=0.583 Sum_probs=77.9
Q ss_pred EEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCC---eeEEEcccccCCCCCCceeEEEEccchhhcCCchh
Q 043503 281 LDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGL---ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 281 LDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
||+|||+|.++..++++ +.+|+++ |+++.+++.++++.. +.+..+|.+.+|+++++||+|++..++++ .++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~--D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-~~~-- 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGI--DISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHH-LED-- 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEE--ES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGG-SSH--
T ss_pred CEecCcCCHHHHHHHhccCCEEEEE--eCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceee-ccC--
Confidence 89999999999999999 8999998 777889998887633 66999999999999999999999999965 444
Q ss_pred HHHHHHHHHHhccCCcEEEE
Q 043503 357 LEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 357 l~~~L~ei~RvLrPGG~lvl 376 (430)
...++.++.|+|||||++++
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 89999999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-16 Score=149.94 Aligned_cols=102 Identities=26% Similarity=0.405 Sum_probs=78.0
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc------CCeeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR------GLISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r------g~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||||.++..++++ +.+|+++ |+++.|++.++++ ..+.++++|++.+|+++++||+|.|++.+
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~~v~~v--D~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fgl 126 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNGKVVGV--DISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGL 126 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS---EEEEE--ES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-G
T ss_pred CEEEEeCCChHHHHHHHHHHCCCccEEEEe--cCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhH
Confidence 35699999999999999886 3688888 8889999998865 24899999999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS 384 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~ 384 (430)
++ .++ ....++|++|+|||||.+++.+|.....
T Consensus 127 rn-~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 127 RN-FPD--RERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp GG--SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred Hh-hCC--HHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 76 555 7889999999999999999888775443
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.9e-16 Score=161.76 Aligned_cols=134 Identities=21% Similarity=0.277 Sum_probs=119.3
Q ss_pred CCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 272 KPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 272 ~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
+..+++|+|+|+..|.|.||++|.+..+.|+.+.+...++.+..+.+||++..++..++.+++.+++||+||+.+++..+
T Consensus 361 i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~ 440 (506)
T PF03141_consen 361 IKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLY 440 (506)
T ss_pred ccccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhh
Confidence 45678999999999999999999999999998877778899999999999999999999999999999999999999888
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEeccc
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMK 409 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~~k 409 (430)
...+.+..+|.||+|+|||||+++|-+.. +....+..++....++...+.....
T Consensus 441 ~~rC~~~~illEmDRILRP~G~~iiRD~~----~vl~~v~~i~~~lrW~~~~~d~e~g 494 (506)
T PF03141_consen 441 KDRCEMEDILLEMDRILRPGGWVIIRDTV----DVLEKVKKIAKSLRWEVRIHDTEDG 494 (506)
T ss_pred cccccHHHHHHHhHhhcCCCceEEEeccH----HHHHHHHHHHHhCcceEEEEecCCC
Confidence 88889999999999999999999996533 3557788899999998877665443
|
; GO: 0008168 methyltransferase activity |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-15 Score=144.74 Aligned_cols=99 Identities=23% Similarity=0.271 Sum_probs=84.9
Q ss_pred cEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChhHHHHHHhcC---------CeeEEEcccccCCCCCCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGPFNSFIASRG---------LISMHISVSQRLPFFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~~le~a~~rg---------~i~~~~~d~~~lpf~d~sfDlV~~~ 345 (430)
.+|||+|||+|.++..++++ + .+|+++ |+++.|++.|+++. .+.++++|++.+|+++++||+|+++
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~~V~gv--D~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDGKVMGL--DFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 45699999999999999886 3 588888 78899999887541 3788999999999999999999999
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
.++++ .++ ...++.++.|+|||||++++.++..
T Consensus 153 ~~l~~-~~d--~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 153 YGLRN-VVD--RLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred ccccc-CCC--HHHHHHHHHHHcCcCcEEEEEECCC
Confidence 99954 565 7889999999999999999987664
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-14 Score=145.37 Aligned_cols=125 Identities=18% Similarity=0.313 Sum_probs=100.3
Q ss_pred CccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccc
Q 043503 276 TIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHV 347 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~ 347 (430)
...+|||||||+|.++..++++ +.+|+++ |+++.|++.++++ + .+.++++|+..+|+++++||+|++..+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gv--D~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGI--TLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEE--ECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 3456799999999999999987 8899998 6678887766543 3 378999999999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC----cC-----------------------cHHHHHHHHHHcCCE
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG----SQ-----------------------LNETYVPMLDRIGFK 400 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~----~~-----------------------~~~~~~~ll~~~Gfk 400 (430)
++| +++ ...++.++.|+|||||.|++.++.... .. ..+++..+++++||.
T Consensus 196 ~~h-~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 196 GEH-MPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred hhc-cCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCC
Confidence 866 555 678999999999999999987653210 00 134688899999999
Q ss_pred EEEEE
Q 043503 401 KLRWN 405 (430)
Q Consensus 401 ~l~~~ 405 (430)
.++..
T Consensus 273 ~v~~~ 277 (340)
T PLN02244 273 DIKTE 277 (340)
T ss_pred eeEee
Confidence 87654
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-14 Score=139.24 Aligned_cols=138 Identities=18% Similarity=0.248 Sum_probs=107.8
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCCCce
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFENTL 339 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d~sf 339 (430)
.+.++..+......+|||||||+|..+..+++. +++|+++ |+++.+++.++++ ..+.+..+|+...|+++++|
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~gi--D~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGV--DICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEE--ECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 455555444334456799999999999999876 7899988 7788998888765 24888899998889999999
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC------------------cHHHHHHHHHHcCCEE
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ------------------LNETYVPMLDRIGFKK 401 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~------------------~~~~~~~ll~~~Gfk~ 401 (430)
|+|++..++.| .+......+++++.++|||||+|++.++...... ....|.++++.+||+.
T Consensus 119 D~V~s~~~l~h-~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 197 (263)
T PTZ00098 119 DMIYSRDAILH-LSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQN 197 (263)
T ss_pred EEEEEhhhHHh-CCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCe
Confidence 99999888866 4433478999999999999999999886542210 1256888999999998
Q ss_pred EEEE
Q 043503 402 LRWN 405 (430)
Q Consensus 402 l~~~ 405 (430)
+...
T Consensus 198 v~~~ 201 (263)
T PTZ00098 198 VVAK 201 (263)
T ss_pred eeEE
Confidence 8765
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-14 Score=138.10 Aligned_cols=111 Identities=25% Similarity=0.426 Sum_probs=93.0
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCC-eeEEEcccccCCCCCCceeEEE
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGL-ISMHISVSQRLPFFENTLDIVH 343 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~-i~~~~~d~~~lpf~d~sfDlV~ 343 (430)
.+.++..++.....+|||+|||+|.++..+++.+.+|+++ |+++.|++.++++.. ..++++|++.+|+++++||+|+
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~--D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~ 108 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTAL--DLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAW 108 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEE--ECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEE
Confidence 3444454554445668999999999999999889999988 778999999988753 5788899999999999999999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
++.++ +|.++ ...++.++.|+|+|||.++++.+.
T Consensus 109 s~~~l-~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 109 SNLAV-QWCGN--LSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred ECchh-hhcCC--HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 98887 67877 789999999999999999998755
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5e-14 Score=136.88 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=102.7
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEE
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVH 343 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~ 343 (430)
..++..++.....+|||+|||+|.++..++++ +.+|+++ |+++.|++.+++++ +.++++|++.++ ++++||+|+
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gv--D~s~~~~~~a~~~~-~~~~~~d~~~~~-~~~~fD~v~ 94 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEAL--DSSPEMVAAARERG-VDARTGDVRDWK-PKPDTDVVV 94 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHhcC-CcEEEcChhhCC-CCCCceEEE
Confidence 34444444334456799999999999999988 6788888 77899999998775 688899988775 568999999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc----------------------cC--------cCcHHHHHHH
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC----------------------FG--------SQLNETYVPM 393 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~----------------------~~--------~~~~~~~~~l 393 (430)
++.++ ||+++ ...++.++.++|||||++++..+.. .. ....+.+..+
T Consensus 95 ~~~~l-~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 171 (255)
T PRK14103 95 SNAAL-QWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAEL 171 (255)
T ss_pred Eehhh-hhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHH
Confidence 99988 56776 7889999999999999998852110 00 0023568889
Q ss_pred HHHcCCEEEEEEe
Q 043503 394 LDRIGFKKLRWNV 406 (430)
Q Consensus 394 l~~~Gfk~l~~~~ 406 (430)
++++||.+..+..
T Consensus 172 l~~aGf~v~~~~~ 184 (255)
T PRK14103 172 LTDAGCKVDAWET 184 (255)
T ss_pred HHhCCCeEEEEee
Confidence 9999998665554
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.4e-14 Score=141.57 Aligned_cols=123 Identities=16% Similarity=0.135 Sum_probs=101.1
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
.+|||||||+|.++..+++.|.+|+++ |+++.+++.|+++ + .+.+++++++.+++++++||+|+|..+++|
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~~V~GI--D~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGATVTGV--DAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCCEEEEE--eCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 367999999999999999889999988 7788998888754 1 378899999999888899999999999976
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeeccc--------------------cCc------CcHHHHHHHHHHcCCEEEEE
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC--------------------FGS------QLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~--------------------~~~------~~~~~~~~ll~~~Gfk~l~~ 404 (430)
+++ ...++.++.++|||||.++++.+-. .+. -..+++..+++++||++...
T Consensus 211 -v~d--~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 211 -VAN--PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred -cCC--HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 555 6789999999999999999875321 111 02467999999999998875
Q ss_pred E
Q 043503 405 N 405 (430)
Q Consensus 405 ~ 405 (430)
.
T Consensus 288 ~ 288 (322)
T PLN02396 288 A 288 (322)
T ss_pred e
Confidence 3
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.8e-14 Score=135.60 Aligned_cols=135 Identities=24% Similarity=0.371 Sum_probs=102.8
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCC-CCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLP-FFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lp-f~d 336 (430)
++.++..++. ...+|||+|||+|.++..+++++.+|+++ |+++.|++.|+++ | .+.+++++.+.++ +++
T Consensus 34 ~~~~l~~l~~-~~~~vLDiGcG~G~~a~~la~~g~~v~~v--D~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 34 LDRLLAELPP-RPLRVLDAGGGEGQTAIKLAELGHQVILC--DLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHHHhcCC-CCCEEEEeCCCchHHHHHHHHcCCEEEEE--ECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 3455554442 23467999999999999999999999988 7788998887764 3 2678888887764 567
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC------------------------------cCc
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG------------------------------SQL 386 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~------------------------------~~~ 386 (430)
++||+|++..+++ |+++ ...++.++.++|||||++++..+-... .-.
T Consensus 111 ~~fD~V~~~~vl~-~~~~--~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 187 (255)
T PRK11036 111 TPVDLILFHAVLE-WVAD--PKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLD 187 (255)
T ss_pred CCCCEEEehhHHH-hhCC--HHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCC
Confidence 8999999999985 4655 678999999999999999875322100 012
Q ss_pred HHHHHHHHHHcCCEEEEEE
Q 043503 387 NETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 387 ~~~~~~ll~~~Gfk~l~~~ 405 (430)
.+++..+++++||+++.+.
T Consensus 188 ~~~l~~~l~~aGf~~~~~~ 206 (255)
T PRK11036 188 PEQVYQWLEEAGWQIMGKT 206 (255)
T ss_pred HHHHHHHHHHCCCeEeeee
Confidence 3678889999999988644
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-13 Score=127.94 Aligned_cols=124 Identities=15% Similarity=0.221 Sum_probs=92.5
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+|||+|||+|.++..++++|.+|+++ |+++.+++.++++ +. +.+.+.|...+++ +++||+|+|+.+++ +
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gv--D~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~-~ 107 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAW--DKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYDFILSTVVLM-F 107 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEE--eCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcCEEEEecchh-h
Confidence 345999999999999999999999998 7778888776543 33 6777888877776 46799999998884 4
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeeccccCc-------C---cHHHHHHHHHHcCCEEEEEEec
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-------Q---LNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-------~---~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
.+......++.++.++|+|||++++..++.... . ...++.+.++ ||+++.....
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~ 171 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNED 171 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCC
Confidence 555468899999999999999976544442211 1 1234666665 8998876543
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=137.57 Aligned_cols=126 Identities=24% Similarity=0.228 Sum_probs=97.6
Q ss_pred ccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHH--hc-----CCeeEEEcccccCCCCCCceeEEEEccch
Q 043503 277 IRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIA--SR-----GLISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~--~r-----g~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.++|||||||+|.++..+++.|. .|+|+ |+++.++..+. .+ ..+.+..++++.+|+ +++||+|+|..++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~Gi--D~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGI--DPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 35679999999999999999864 58887 77777765322 11 237888999999998 7899999999999
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC--------------------cHHHHHHHHHHcCCEEEEEEecc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ--------------------LNETYVPMLDRIGFKKLRWNVGM 408 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~--------------------~~~~~~~ll~~~Gfk~l~~~~~~ 408 (430)
+| ..+ ...++.+++++|+|||.++++.+...+.. ....+..+++++||+.++.....
T Consensus 200 ~H-~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 200 YH-RRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred hc-cCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCC
Confidence 65 555 77899999999999999998765432111 12467889999999998876443
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-13 Score=128.94 Aligned_cols=98 Identities=23% Similarity=0.335 Sum_probs=80.9
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.++..+++. +.+|+++ |+++.+++.++++ + .+.++.+|...+++++++||+|++..++
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGL--DFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGL 124 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccc
Confidence 46799999999999999876 3688888 6678888777654 2 3788889998888888999999998888
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
+ +.++ ...++.++.|+|+|||++++.++.
T Consensus 125 ~-~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 125 R-NVPD--YMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred c-cCCC--HHHHHHHHHHHcCcCeEEEEEECC
Confidence 4 4565 678999999999999999886543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=122.59 Aligned_cols=118 Identities=24% Similarity=0.372 Sum_probs=90.9
Q ss_pred ccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchh
Q 043503 277 IRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
..+|||+|||+|.++..+++.+.+++++ |+++.+++. ........+....+.++++||+|+|+.+++| +++
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~~~~g~--D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~-~~d-- 93 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAKRGFEVTGV--DISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEH-LPD-- 93 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHHTTSEEEEE--ESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGG-SSH--
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCEEEEE--ECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhh-ccc--
Confidence 3457999999999999999999999998 666777666 2233333333444567899999999999955 666
Q ss_pred HHHHHHHHHHhccCCcEEEEeeccccC-----------cC---------cHHHHHHHHHHcCCEEEE
Q 043503 357 LEFTLYDIYRLLRPGGIFWLDRFFCFG-----------SQ---------LNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 357 l~~~L~ei~RvLrPGG~lvl~~f~~~~-----------~~---------~~~~~~~ll~~~Gfk~l~ 403 (430)
...+|.++.++|||||+++++.+.... .. ..+.+..+++++||++++
T Consensus 94 ~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 889999999999999999998776311 00 235688899999998875
|
... |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.6e-13 Score=141.26 Aligned_cols=135 Identities=21% Similarity=0.338 Sum_probs=104.8
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc--C---CeeEEEcccccCCCCCCce
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR--G---LISMHISVSQRLPFFENTL 339 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r--g---~i~~~~~d~~~lpf~d~sf 339 (430)
+.++.........+|||||||+|.++..+++. +.+|+++ |+++.+++.|+++ + .+.+.++|+...++++++|
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gv--DiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGI--DLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEE--ECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 33444333333456799999999999999886 7889988 6778888888654 2 3788999998888888999
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc-----------------CcHHHHHHHHHHcCCEEE
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-----------------QLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-----------------~~~~~~~~ll~~~Gfk~l 402 (430)
|+|+|..++.| +++ ...++.+++|+|||||.+++.++..... ...+.+.++++++||+.+
T Consensus 334 D~I~s~~~l~h-~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i 410 (475)
T PLN02336 334 DVIYSRDTILH-IQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDV 410 (475)
T ss_pred EEEEECCcccc-cCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeee
Confidence 99999989865 555 7789999999999999999987653211 023457889999999988
Q ss_pred EEE
Q 043503 403 RWN 405 (430)
Q Consensus 403 ~~~ 405 (430)
...
T Consensus 411 ~~~ 413 (475)
T PLN02336 411 IAE 413 (475)
T ss_pred eee
Confidence 653
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.8e-13 Score=133.17 Aligned_cols=140 Identities=21% Similarity=0.164 Sum_probs=100.8
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHH---h----cCCeeEEEcccccCCCCCC
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIA---S----RGLISMHISVSQRLPFFEN 337 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~---~----rg~i~~~~~d~~~lpf~d~ 337 (430)
+.++..+.....++|||+|||+|.++..++..|. .|+|+ |+++.|+..+. . ...+.+...+.+.++.. .
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~Gi--DpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~ 187 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGI--DPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-Y 187 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-C
Confidence 3444433323335679999999999999998875 57777 77887775432 1 13367777888888754 4
Q ss_pred ceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC--------------------cHHHHHHHHHHc
Q 043503 338 TLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ--------------------LNETYVPMLDRI 397 (430)
Q Consensus 338 sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~--------------------~~~~~~~ll~~~ 397 (430)
+||+|+|+.++.| .++ ...+|.+++|+|||||.|++..+...+.. ....+...++++
T Consensus 188 ~FD~V~s~gvL~H-~~d--p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~a 264 (314)
T TIGR00452 188 AFDTVFSMGVLYH-RKS--PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKV 264 (314)
T ss_pred CcCEEEEcchhhc-cCC--HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHC
Confidence 8999999999966 455 77899999999999999998765432211 124567889999
Q ss_pred CCEEEEEEeccccc
Q 043503 398 GFKKLRWNVGMKLD 411 (430)
Q Consensus 398 Gfk~l~~~~~~k~~ 411 (430)
||+.++......+.
T Consensus 265 GF~~V~i~~~~~tt 278 (314)
T TIGR00452 265 GFENFRILDVLKTT 278 (314)
T ss_pred CCeEEEEEeccCCC
Confidence 99999877554443
|
Known examples to date are restricted to the proteobacteria. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.8e-13 Score=128.25 Aligned_cols=117 Identities=24% Similarity=0.357 Sum_probs=92.5
Q ss_pred cEEEEEcCCccHHHHHHHHc--C------CEEEEEecCCChhHHHHHHhcC----C-----eeEEEcccccCCCCCCcee
Q 043503 278 RIGLDIGGGTGTFAARMRER--N------VTIITTSLNLDGPFNSFIASRG----L-----ISMHISVSQRLPFFENTLD 340 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g------~~Vv~vdiD~s~~~le~a~~rg----~-----i~~~~~d~~~lpf~d~sfD 340 (430)
-.+||++||||.+|..+.+. . .+|+.+ |++++|+..+++|. + +.++++|++.|||++++||
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~--Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D 179 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVL--DINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD 179 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccccCCCCceEEEE--eCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence 45699999999999999887 2 577777 77899998877662 2 7889999999999999999
Q ss_pred EEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEE
Q 043503 341 IVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 341 lV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
+....+.+++|. + .++.|+|++|||||||+|.+.+|-..+. +.+..++...-|+++
T Consensus 180 ~yTiafGIRN~t-h--~~k~l~EAYRVLKpGGrf~cLeFskv~~---~~l~~fy~~ysf~Vl 235 (296)
T KOG1540|consen 180 AYTIAFGIRNVT-H--IQKALREAYRVLKPGGRFSCLEFSKVEN---EPLKWFYDQYSFDVL 235 (296)
T ss_pred eEEEecceecCC-C--HHHHHHHHHHhcCCCcEEEEEEcccccc---HHHHHHHHhhhhhhh
Confidence 999999998865 4 7899999999999999999887764331 334444444444443
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=131.91 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=99.1
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc---CCeeEEEcccccCCCCCCceeEEEEccchhhcC
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR---GLISMHISVSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r---g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
.+|||+|||+|.++..+++. +.+|+++ |.++.|++.++++ ..+.++.+|.+.+++++++||+|+++.++++ .
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~~~VtgV--D~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~-~ 191 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDAKNVTIL--DQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEY-W 191 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhh-C
Confidence 45799999999999988875 5688887 7788998888775 2378899999999999999999999988855 5
Q ss_pred CchhHHHHHHHHHHhccCCcEEEEeeccccC-------------cCcHHHHHHHHHHcCCEEEEEEe
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG-------------SQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~-------------~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
++ ....++++.|+|+|||.+++.+..... ....+++.++++++||+.+++..
T Consensus 192 ~d--~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 192 PD--PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CC--HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 55 567999999999999999875432110 11246788999999999888764
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-13 Score=130.46 Aligned_cols=96 Identities=24% Similarity=0.395 Sum_probs=82.0
Q ss_pred EEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCCCceeEEEEccchhhcCCc
Q 043503 280 GLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 280 VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d 354 (430)
|||+|||-|.++..||+.|+.|+++ |+++.+++.|+.+ |. +.+.+...+.+....++||+|+|+.+++| .++
T Consensus 63 vLDvGCGgG~Lse~mAr~Ga~Vtgi--D~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH-v~d 139 (243)
T COG2227 63 VLDVGCGGGILSEPLARLGASVTGI--DASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH-VPD 139 (243)
T ss_pred EEEecCCccHhhHHHHHCCCeeEEe--cCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc-cCC
Confidence 4999999999999999999999998 7789989888754 33 55777777777765689999999999987 666
Q ss_pred hhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 355 SMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
.+.+++.+.+.+||||.+++++.-
T Consensus 140 --p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 140 --PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred --HHHHHHHHHHHcCCCcEEEEeccc
Confidence 778999999999999999987643
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-13 Score=113.33 Aligned_cols=97 Identities=22% Similarity=0.309 Sum_probs=77.5
Q ss_pred EEEEEcCCccHHHHHHHH--cCCEEEEEecCCChhHHHHHHhc-------CCeeEEEccc-ccCCCCCCceeEEEEcc-c
Q 043503 279 IGLDIGGGTGTFAARMRE--RNVTIITTSLNLDGPFNSFIASR-------GLISMHISVS-QRLPFFENTLDIVHSMH-V 347 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~--~g~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~-~~lpf~d~sfDlV~~~~-~ 347 (430)
+|||+|||+|.++..+++ .+.+|+++ |+++.+++.++++ ..+.++++|+ .... ....||+|++.. +
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGARVVGV--DISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-FLEPFDLVICSGFT 80 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSEEEEE--ESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-TSSCEEEEEECSGS
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCEEEEE--eCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-cCCCCCEEEECCCc
Confidence 459999999999999999 59999998 6678888877765 2389999999 3333 345699999988 5
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+.++.+.+....++..+.+.|+|||++++..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5434433457889999999999999999864
|
... |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=127.60 Aligned_cols=124 Identities=25% Similarity=0.418 Sum_probs=97.8
Q ss_pred cEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|..+..+++. + .+|+++ |+++.|++.++++ + .+.++.+|++.+++++++||+|+++.++
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gv--D~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGV--DMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVI 156 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEE--CCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcc
Confidence 45699999999988777665 3 468887 7788999888764 2 3778889999999888999999998887
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc-------------------CcHHHHHHHHHHcCCEEEEEEe
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-------------------QLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-------------------~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
++.++ ...++.++.|+|||||+|++.++...+. ...+++.+++++.||..+....
T Consensus 157 -~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 157 -NLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred -cCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 45666 6789999999999999999987653321 1234688899999999876543
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.9e-13 Score=129.07 Aligned_cols=146 Identities=18% Similarity=0.163 Sum_probs=101.1
Q ss_pred cEEEEEcCCccHHHHHHHHc----CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER----NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~----g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~ 346 (430)
.+|||+|||+|..+..+++. +.+++++ |+++.|++.++++ + .+.++++|+..++++ .+|+|+++.
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gv--D~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAI--DNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEE--eCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 45699999999999888772 6788888 7889999888765 2 388899999888764 489999988
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC-c----HHHHHHHHHHcCCEEEEEEe-------cccccCCC
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-L----NETYVPMLDRIGFKKLRWNV-------GMKLDRGV 414 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-~----~~~~~~ll~~~Gfk~l~~~~-------~~k~~~g~ 414 (430)
++++ +++.....++.+++++|||||.|++.+.+..... . .+.+.......||....+.. ......-.
T Consensus 134 ~l~~-l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~ 212 (247)
T PRK15451 134 TLQF-LEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVE 212 (247)
T ss_pred HHHh-CCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHH
Confidence 8854 5554578899999999999999999875533222 1 22344445556776432211 11112233
Q ss_pred chhHHHhHhhccCC
Q 043503 415 KKNEWYFSAVLEKP 428 (430)
Q Consensus 415 ~~~~~~lsa~leKp 428 (430)
...+++-+++|..|
T Consensus 213 ~~~~~L~~aGF~~v 226 (247)
T PRK15451 213 THKARLHKAGFEHS 226 (247)
T ss_pred HHHHHHHHcCchhH
Confidence 44555666666654
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.8e-12 Score=124.66 Aligned_cols=187 Identities=20% Similarity=0.182 Sum_probs=117.8
Q ss_pred CCCCCCCCCCcHHHHHHHHHcCCCCCCCC-ccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccchhhhhhhccCCC
Q 043503 158 TYDIGGECPVDDVFAQRLMLKGCEPLPRR-RCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKAPG 236 (430)
Q Consensus 158 ~y~~~~~cp~d~~~~~~l~~~~c~plprr-rC~~~~p~~y~~P~pwP~s~w~~p~d~~~~W~~y~c~~~~~l~~~k~~~g 236 (430)
.|+.......||+ +.|.+++.|.... ||.+.++-....+ |.. ..+ ..+....+|
T Consensus 45 ~~~~~~~~~~dw~---~~w~~~~~p~~~g~~~~i~p~~~~~~~---~~~--------~~i-----------~i~p~~afg 99 (250)
T PRK00517 45 TYTIEEVEDEDWE---REWKKYFHPIRIGDRLWIVPSWEDPPD---PDE--------INI-----------ELDPGMAFG 99 (250)
T ss_pred ceEEEEcCchhHH---HHHHHHCCCEEEcCCEEEECCCcCCCC---CCe--------EEE-----------EECCCCccC
Confidence 5666677888999 8999999999877 8988886542211 111 111 122222333
Q ss_pred CccCCcccccccccccceeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCE-EEEEecCCChhHHHH
Q 043503 237 FFDCKDCFDLQGREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVT-IITTSLNLDGPFNSF 315 (430)
Q Consensus 237 ~~~C~~cFd~~~~e~~~~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~-Vv~vdiD~s~~~le~ 315 (430)
. +.+.. ....++.+..... ...+|||+|||+|.++..++..|.. |+++ |+++.+++.
T Consensus 100 t----------g~h~t--------t~~~l~~l~~~~~--~~~~VLDiGcGsG~l~i~~~~~g~~~v~gi--Dis~~~l~~ 157 (250)
T PRK00517 100 T----------GTHPT--------TRLCLEALEKLVL--PGKTVLDVGCGSGILAIAAAKLGAKKVLAV--DIDPQAVEA 157 (250)
T ss_pred C----------CCCHH--------HHHHHHHHHhhcC--CCCEEEEeCCcHHHHHHHHHHcCCCeEEEE--ECCHHHHHH
Confidence 2 11111 1122222222221 2245699999999999988887664 8888 666888877
Q ss_pred HHhc----CCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHH
Q 043503 316 IASR----GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYV 391 (430)
Q Consensus 316 a~~r----g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~ 391 (430)
++++ +.-.. ..++..+.+||+|+++... + .+..++.++.++|||||+++++++.. ...+.+.
T Consensus 158 A~~n~~~~~~~~~-----~~~~~~~~~fD~Vvani~~-~-----~~~~l~~~~~~~LkpgG~lilsgi~~---~~~~~v~ 223 (250)
T PRK00517 158 ARENAELNGVELN-----VYLPQGDLKADVIVANILA-N-----PLLELAPDLARLLKPGGRLILSGILE---EQADEVL 223 (250)
T ss_pred HHHHHHHcCCCce-----EEEccCCCCcCEEEEcCcH-H-----HHHHHHHHHHHhcCCCcEEEEEECcH---hhHHHHH
Confidence 7655 32010 1112122379999995332 2 25678999999999999999987663 2346678
Q ss_pred HHHHHcCCEEEEEE
Q 043503 392 PMLDRIGFKKLRWN 405 (430)
Q Consensus 392 ~ll~~~Gfk~l~~~ 405 (430)
..+.+.||++.+..
T Consensus 224 ~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 224 EAYEEAGFTLDEVL 237 (250)
T ss_pred HHHHHCCCEEEEEE
Confidence 88999999988644
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-12 Score=123.92 Aligned_cols=87 Identities=16% Similarity=0.284 Sum_probs=76.6
Q ss_pred cEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchh
Q 043503 278 RIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
.+|||+|||||.++..++++ +.+|+++ |+++.|++.++++. .++++|++.+|+++++||+|+++.++++ .++
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~~v~gv--D~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~-~~d-- 125 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKYYVVAL--DYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHA-SDN-- 125 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCCEEEEE--CCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhc-cCC--
Confidence 45699999999999999988 6889988 88999999988764 4678899999999999999999999954 666
Q ss_pred HHHHHHHHHHhccCC
Q 043503 357 LEFTLYDIYRLLRPG 371 (430)
Q Consensus 357 l~~~L~ei~RvLrPG 371 (430)
.+..++|+.|+|||+
T Consensus 126 ~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 126 IEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHHHHHhcCc
Confidence 789999999999994
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=121.29 Aligned_cols=123 Identities=12% Similarity=0.130 Sum_probs=89.4
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCCCceeEEEEccchhhcCC
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~ 353 (430)
+|||+|||+|.++..++++|.+|+++ |+++.|++.++++ +. +.+...|....+++ ++||+|+++.++++ .+
T Consensus 33 ~vLDiGcG~G~~a~~la~~g~~V~~i--D~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~-~~ 108 (195)
T TIGR00477 33 KTLDLGCGQGRNSLYLSLAGYDVRAW--DHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMF-LQ 108 (195)
T ss_pred cEEEeCCCCCHHHHHHHHCCCeEEEE--ECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEeccccc-CC
Confidence 46999999999999999999999998 6678887765433 43 56666777665653 57999999888854 55
Q ss_pred chhHHHHHHHHHHhccCCcEEEEeeccccCc-------C---cHHHHHHHHHHcCCEEEEEEec
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-------Q---LNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-------~---~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
......++.++.|+|+|||++++..++.... . ...++.+.+. +|.++.+...
T Consensus 109 ~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~ 170 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEA 170 (195)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeecc
Confidence 4457899999999999999966654432111 1 1245555554 5888887744
|
Part of a tellurite-reducing operon tehA and tehB |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-12 Score=120.73 Aligned_cols=121 Identities=24% Similarity=0.290 Sum_probs=95.4
Q ss_pred EEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccchh
Q 043503 279 IGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
+|||||||+|.++..+++. +.+|+++ |+++.+.+.++++ | .+.++..|....+++ ++||+|++..+++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gi--d~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGY--TISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHH
Confidence 5799999999999999887 4788888 6678887777654 3 378888888666654 5899999998886
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc------------CcHHHHHHHHHHcCCEEEEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS------------QLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~------------~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
| +++ ...++.++.++|+|||++++.++..... .....|.+++.+.||+.++..
T Consensus 79 ~-~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 79 H-IKD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred h-CCC--HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 5 555 7899999999999999999987643110 013568899999999998755
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.7e-12 Score=117.75 Aligned_cols=133 Identities=20% Similarity=0.281 Sum_probs=99.5
Q ss_pred HHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc-----CCeeEEEcccccCCCCCCce
Q 043503 268 VLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR-----GLISMHISVSQRLPFFENTL 339 (430)
Q Consensus 268 lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r-----g~i~~~~~d~~~lpf~d~sf 339 (430)
++.........+|||+|||+|.++..++++ +.+++++ |+++.+++.++++ ..+.+...|...+++++++|
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~--d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGI--DRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEE--eCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 333333333456799999999999999886 3678888 6678888877765 23788888988888888999
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc-----cCc-------------------CcHHHHHHHHH
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC-----FGS-------------------QLNETYVPMLD 395 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~-----~~~-------------------~~~~~~~~ll~ 395 (430)
|+|++..++.+ .++ ...++.++.++|+|||++++..... ... .....+..+++
T Consensus 89 D~v~~~~~~~~-~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 165 (241)
T PRK08317 89 DAVRSDRVLQH-LED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFR 165 (241)
T ss_pred eEEEEechhhc-cCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 99999999855 555 7889999999999999998865321 000 01235778999
Q ss_pred HcCCEEEEEE
Q 043503 396 RIGFKKLRWN 405 (430)
Q Consensus 396 ~~Gfk~l~~~ 405 (430)
+.||..+...
T Consensus 166 ~aGf~~~~~~ 175 (241)
T PRK08317 166 EAGLTDIEVE 175 (241)
T ss_pred HcCCCceeEE
Confidence 9999866554
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-12 Score=123.78 Aligned_cols=105 Identities=23% Similarity=0.306 Sum_probs=84.9
Q ss_pred HHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcC-CeeEEEcccccCCCCCCceeEEE
Q 043503 267 QVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRG-LISMHISVSQRLPFFENTLDIVH 343 (430)
Q Consensus 267 ~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg-~i~~~~~d~~~lpf~d~sfDlV~ 343 (430)
.++..++.....+|||||||+|.++..++++ +.+|+++ |+++.|++.++++. .+.++.+|+..+. ++++||+|+
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gv--D~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~ 98 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGI--DSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIF 98 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEE
Confidence 3444344344456799999999999999987 5789988 77889999988763 3788888887764 456999999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
++.++ ||+++ ...++.++.++|||||.+++.
T Consensus 99 ~~~~l-~~~~d--~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 99 ANASL-QWLPD--HLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EccCh-hhCCC--HHHHHHHHHHhcCCCcEEEEE
Confidence 99988 56776 678999999999999999885
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=123.02 Aligned_cols=99 Identities=20% Similarity=0.238 Sum_probs=81.6
Q ss_pred cEEEEEcCCccHHHHHHHHc----CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER----NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~----g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~ 346 (430)
.+|||+|||+|.++..++++ +.+++++ |+++.|++.|+++ + .+.++++|+..++++ .+|+|++..
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gv--D~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGI--DNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEE--eCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 45699999999999999874 5789988 7789999888764 2 378899999888865 489999999
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
+++ +.++.....++.++.|+|+|||.|++.+.+.
T Consensus 131 ~l~-~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 131 TLQ-FLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred chh-hCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 884 4655457889999999999999999987654
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.3e-13 Score=111.34 Aligned_cols=90 Identities=29% Similarity=0.437 Sum_probs=75.0
Q ss_pred EEEEcCCccHHHHHHHHcC-----CEEEEEecCCChhHHHHHHhcC-----CeeEEEcccccCCCCCCceeEEEEccc-h
Q 043503 280 GLDIGGGTGTFAARMRERN-----VTIITTSLNLDGPFNSFIASRG-----LISMHISVSQRLPFFENTLDIVHSMHV-L 348 (430)
Q Consensus 280 VLDIGcGtG~~a~~La~~g-----~~Vv~vdiD~s~~~le~a~~rg-----~i~~~~~d~~~lpf~d~sfDlV~~~~~-L 348 (430)
|||+|||+|..+..+++.. .+++++ |+++.|++.++++. .+.++++|+..+++.+++||+|+|+.. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gv--D~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGV--DISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEE--ES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEE--ECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 5999999999999999873 788888 77899999888764 389999999999988999999999655 7
Q ss_pred hhcCCchhHHHHHHHHHHhccCCc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGG 372 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG 372 (430)
.| .+++.+..++.++.++|||||
T Consensus 79 ~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred CC-CCHHHHHHHHHHHHHHhCCCC
Confidence 55 666679999999999999998
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-12 Score=120.66 Aligned_cols=172 Identities=18% Similarity=0.185 Sum_probs=110.8
Q ss_pred ccceeecCCchhH-HHHHHHc-cCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeE
Q 043503 251 KSRWLIDNGKLDY-GIDQVLS-MKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISM 324 (430)
Q Consensus 251 ~~~~~~~~~~~~~-~id~lL~-~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~ 324 (430)
.+-|.+.....+. ....++. .+|...++.+||+|||.|.++..|+.+.-.++++ |+++..++.|++| ..+.+
T Consensus 16 ~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~Llav--Dis~~Al~~Ar~Rl~~~~~V~~ 93 (201)
T PF05401_consen 16 DDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAV--DISPRALARARERLAGLPHVEW 93 (201)
T ss_dssp SSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEE--ES-HHHHHHHHHHTTT-SSEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEE--eCCHHHHHHHHHhcCCCCCeEE
Confidence 3445554443333 1234443 4688888999999999999999999997788888 7788889999887 33899
Q ss_pred EEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC------cCcHHHHHHHHHHcC
Q 043503 325 HISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG------SQLNETYVPMLDRIG 398 (430)
Q Consensus 325 ~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~------~~~~~~~~~ll~~~G 398 (430)
++.+.... .|+++||+||++.+++.+.+.+.+..++..+...|+|||.+++.++-... ..-.+.+..++.+.=
T Consensus 94 ~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~ 172 (201)
T PF05401_consen 94 IQADVPEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHL 172 (201)
T ss_dssp EES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHS
T ss_pred EECcCCCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHh
Confidence 99988664 47899999999999965444456889999999999999999998764211 112356777777764
Q ss_pred CEEEEEEecccccCCCchhHHHhHhhccCCCC
Q 043503 399 FKKLRWNVGMKLDRGVKKNEWYFSAVLEKPMT 430 (430)
Q Consensus 399 fk~l~~~~~~k~~~g~~~~~~~lsa~leKp~~ 430 (430)
-++....- .|....+--+-+-|+||++
T Consensus 173 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 199 (201)
T PF05401_consen 173 TEVERVEC-----RGGSPNEDCLLARFRNPVS 199 (201)
T ss_dssp EEEEEEEE-----E-SSTTSEEEEEEEE--SS
T ss_pred hheeEEEE-----cCCCCCCceEeeeecCCcC
Confidence 33333321 1223344455667777764
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.5e-13 Score=131.25 Aligned_cols=192 Identities=19% Similarity=0.245 Sum_probs=114.8
Q ss_pred CCCCCCCCCCcHHHHHHHHHcCCCCCCCC-ccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccchhhhhhhccCCC
Q 043503 158 TYDIGGECPVDDVFAQRLMLKGCEPLPRR-RCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKAPG 236 (430)
Q Consensus 158 ~y~~~~~cp~d~~~~~~l~~~~c~plprr-rC~~~~p~~y~~P~pwP~s~w~~p~d~~~~W~~y~c~~~~~l~~~k~~~g 236 (430)
.++....-..||. +.|.++++|++.. |+.+.|+-.-. |. +++.-++ ..++.+++|
T Consensus 86 ~~~~~~~~~~dW~---~~Wk~~~~P~~vg~~~~I~P~w~~~-~~---------~~~~~~I-----------~idPg~AFG 141 (295)
T PF06325_consen 86 EIEIEEIEEEDWE---EAWKKYFKPIRVGDRLVIVPSWEEY-PE---------PPDEIVI-----------EIDPGMAFG 141 (295)
T ss_dssp --EEEE--HHCHH---HHHHHH---EEECTTEEEEETT-----S---------STTSEEE-----------EESTTSSS-
T ss_pred ceEEEEeccccch---HHHHhcCccEEECCcEEEECCCccc-CC---------CCCcEEE-----------EECCCCccc
Confidence 4555566667898 8999999999887 78887775322 11 1111122 256677777
Q ss_pred CccCCcccccccccccceeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCCh--hHH
Q 043503 237 FFDCKDCFDLQGREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDG--PFN 313 (430)
Q Consensus 237 ~~~C~~cFd~~~~e~~~~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~--~~l 313 (430)
. |.+.++ ..-+..+-..... .++|||+|||+|.+++..+..|+ +|+++|+|..+ ...
T Consensus 142 T----------G~H~TT--------~lcl~~l~~~~~~--g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~ 201 (295)
T PF06325_consen 142 T----------GHHPTT--------RLCLELLEKYVKP--GKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR 201 (295)
T ss_dssp S----------SHCHHH--------HHHHHHHHHHSST--TSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH
T ss_pred C----------CCCHHH--------HHHHHHHHHhccC--CCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH
Confidence 7 444333 1212222222222 24579999999999999999976 79999777543 233
Q ss_pred HHHHhcCC-eeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHH
Q 043503 314 SFIASRGL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVP 392 (430)
Q Consensus 314 e~a~~rg~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ 392 (430)
++++.+|. ..+.+..... .....||+|+++ .+.+ -+..++..+.+.|+|||+++++.++. ...+.+.+
T Consensus 202 ~N~~~N~~~~~~~v~~~~~--~~~~~~dlvvAN-I~~~-----vL~~l~~~~~~~l~~~G~lIlSGIl~---~~~~~v~~ 270 (295)
T PF06325_consen 202 ENAELNGVEDRIEVSLSED--LVEGKFDLVVAN-ILAD-----VLLELAPDIASLLKPGGYLILSGILE---EQEDEVIE 270 (295)
T ss_dssp HHHHHTT-TTCEEESCTSC--TCCS-EEEEEEE-S-HH-----HHHHHHHHCHHHEEEEEEEEEEEEEG---GGHHHHHH
T ss_pred HHHHHcCCCeeEEEEEecc--cccccCCEEEEC-CCHH-----HHHHHHHHHHHhhCCCCEEEEccccH---HHHHHHHH
Confidence 45555555 2232222222 335899999994 4423 26778999999999999999999884 33466777
Q ss_pred HHHHcCCEEEEEE
Q 043503 393 MLDRIGFKKLRWN 405 (430)
Q Consensus 393 ll~~~Gfk~l~~~ 405 (430)
.+++ ||+.++..
T Consensus 271 a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 271 AYKQ-GFELVEER 282 (295)
T ss_dssp HHHT-TEEEEEEE
T ss_pred HHHC-CCEEEEEE
Confidence 7877 99987654
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.2e-12 Score=122.83 Aligned_cols=135 Identities=20% Similarity=0.242 Sum_probs=91.2
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHh----cCC---eeEEEcccccCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIAS----RGL---ISMHISVSQRLPFFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~----rg~---i~~~~~d~~~lpf~d 336 (430)
++.+++.+......+|||||||.|.++.+++++ |++|+++ .+|+...+.+++ .|+ +.+...|...++
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gi--tlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--- 125 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGI--TLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--- 125 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEE--ES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEE--ECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---
Confidence 444454444344456799999999999999999 9999998 567777666654 354 888888887766
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc---------------------C--cHHHHHHH
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS---------------------Q--LNETYVPM 393 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~---------------------~--~~~~~~~l 393 (430)
.+||.|++..+++|. .......++.++.++|+|||.+++..+..... . ...++...
T Consensus 126 ~~fD~IvSi~~~Ehv-g~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~ 204 (273)
T PF02353_consen 126 GKFDRIVSIEMFEHV-GRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRA 204 (273)
T ss_dssp -S-SEEEEESEGGGT-CGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHH
T ss_pred CCCCEEEEEechhhc-ChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHH
Confidence 399999999999885 44468899999999999999998754443111 1 12346667
Q ss_pred HHHcCCEEEEEE
Q 043503 394 LDRIGFKKLRWN 405 (430)
Q Consensus 394 l~~~Gfk~l~~~ 405 (430)
+++.||++..+.
T Consensus 205 ~~~~~l~v~~~~ 216 (273)
T PF02353_consen 205 AEDAGLEVEDVE 216 (273)
T ss_dssp HHHTT-EEEEEE
T ss_pred HhcCCEEEEEEE
Confidence 888999988776
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=123.43 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=82.1
Q ss_pred HHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCc
Q 043503 268 VLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENT 338 (430)
Q Consensus 268 lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~s 338 (430)
+++.......++|||||||+|.++..++++ +.+++++| . +.+++.++++ | .+.++.+|+...++++
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D--~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~-- 215 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILN--L-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-- 215 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEe--c-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--
Confidence 333333344567899999999999999998 56788774 3 5677665543 3 3788999987666544
Q ss_pred eeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecccc
Q 043503 339 LDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF 382 (430)
Q Consensus 339 fDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~ 382 (430)
+|+|++++++++|.++ ....++++++++|+|||++++.++...
T Consensus 216 ~D~v~~~~~lh~~~~~-~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 216 ADAVLFCRILYSANEQ-LSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred CCEEEeEhhhhcCChH-HHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 6999999999776543 467899999999999999999887543
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.6e-12 Score=112.86 Aligned_cols=97 Identities=32% Similarity=0.493 Sum_probs=80.9
Q ss_pred cEEEEEcCCccHHHHHHHH-c--CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCC--CCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRE-R--NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLP--FFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~-~--g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lp--f~d~sfDlV~~~~ 346 (430)
.+|||+|||+|.++..+++ . +.+++++ |+++.|++.|+++ +. +.++++|...++ ++ +.||+|++..
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gv--D~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGV--DISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEE--ESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEE--ECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 4569999999999999994 3 6889988 7779999888763 33 899999998887 55 8999999998
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
++ ++..+ ...++.++.++|++||.+++.++.
T Consensus 82 ~l-~~~~~--~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VL-HHFPD--PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TG-GGTSH--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ch-hhccC--HHHHHHHHHHHcCCCcEEEEEECC
Confidence 88 44655 678999999999999999987755
|
... |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-11 Score=115.19 Aligned_cols=98 Identities=26% Similarity=0.441 Sum_probs=80.5
Q ss_pred cEEEEEcCCccHHHHHHHHcC---CEEEEEecCCChhHHHHHHhc-------CCeeEEEcccccCCCCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRERN---VTIITTSLNLDGPFNSFIASR-------GLISMHISVSQRLPFFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g---~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~~~lpf~d~sfDlV~~~~~ 347 (430)
.+|||+|||+|.++..+++.+ .+++++ |+++.+++.++++ ..+.++.+|+..+++.+++||+|+++.+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~--D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGL--DFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEE--eCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 456999999999999998874 788888 6677887777664 2378888898888877889999999888
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
+++ .++ ...++.++.++|+|||.+++.++.
T Consensus 131 l~~-~~~--~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 131 LRN-VPD--IDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred ccc-CCC--HHHHHHHHHHhccCCcEEEEEEec
Confidence 854 555 788999999999999999886553
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=116.44 Aligned_cols=122 Identities=22% Similarity=0.357 Sum_probs=93.9
Q ss_pred cEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhcC--CeeEEEcccccCCCCCCceeEEEEccchhhcCC
Q 043503 278 RIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASRG--LISMHISVSQRLPFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~rg--~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~ 353 (430)
.+|||+|||+|.++..+++.+ .+++++ |+++.+++.++++. .+.++.+|....++++++||+|++..++ +|.+
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~--D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l-~~~~ 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIAL--DISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLAL-QWCD 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEE--eChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhh-hhcc
Confidence 467999999999999999884 566777 66788888777663 3688899999999889999999999988 5566
Q ss_pred chhHHHHHHHHHHhccCCcEEEEeeccccCcC--------------cHHHHHHHHHHcCCEEEEEE
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ--------------LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~--------------~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+ ...++.++.++|+|||.+++..+...... ..+.+..++.+. |+...+.
T Consensus 113 ~--~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 113 D--LSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred C--HHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 5 78899999999999999998765432110 123466677776 7655443
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-11 Score=120.93 Aligned_cols=113 Identities=12% Similarity=0.214 Sum_probs=81.7
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||+|||+|.++..+++.|. +|+++ |+++.+++.++++ +. +.+...+. .+..+++||+|+++...
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~av--Did~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~fDlVvan~~~- 235 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGI--DIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKADVIVANILA- 235 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEE--ECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCceEEEEecCH-
Confidence 4579999999999999888864 78888 6667778777654 32 33444432 23346789999996433
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
+ .+..++.++.++|||||+++++.+.. ...+.+.+.+++. |+.++.
T Consensus 236 ~-----~l~~ll~~~~~~LkpgG~li~sgi~~---~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 236 E-----VIKELYPQFSRLVKPGGWLILSGILE---TQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred H-----HHHHHHHHHHHHcCCCcEEEEEeCcH---hHHHHHHHHHHcc-CceeeE
Confidence 2 25678999999999999999988663 2345667777766 887754
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.6e-12 Score=131.60 Aligned_cols=136 Identities=16% Similarity=0.216 Sum_probs=101.9
Q ss_pred HHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccc--cCCCCCCcee
Q 043503 267 QVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQ--RLPFFENTLD 340 (430)
Q Consensus 267 ~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~--~lpf~d~sfD 340 (430)
.++..++.....+|||+|||+|.++..+++.+.+|+++ |+++.|++.+++. ..+.++++|+. .+++++++||
T Consensus 28 ~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~gi--D~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD 105 (475)
T PLN02336 28 EILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIAL--DFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVD 105 (475)
T ss_pred HHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEE--eCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEE
Confidence 33333433333467999999999999999988889988 6778888776543 23778888875 4678889999
Q ss_pred EEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc---------C---cHHHHHHHHHHcCCEEEEEE
Q 043503 341 IVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS---------Q---LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 341 lV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~---------~---~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+|++..++++ .++.....++.++.|+|+|||++++.+...... . ....|..++.+.||......
T Consensus 106 ~I~~~~~l~~-l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 181 (475)
T PLN02336 106 LIFSNWLLMY-LSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGN 181 (475)
T ss_pred EEehhhhHHh-CCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCC
Confidence 9999998855 555457899999999999999998865432211 1 24578899999998866443
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-11 Score=121.62 Aligned_cols=121 Identities=12% Similarity=0.163 Sum_probs=89.1
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHh----cCC-eeEEEcccccCCCCCCceeEEEEccchhhcCC
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIAS----RGL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~----rg~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~ 353 (430)
+|||+|||+|.++.+++++|.+|+++ |.++.+++.+++ ++. +.+...|....++ +++||+|++..++++ .+
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~V~av--D~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~-l~ 198 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFDVTAV--DINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMF-LN 198 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCEEEEE--ECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhh-CC
Confidence 45999999999999999999999998 667877766543 344 6667777766554 678999999988854 55
Q ss_pred chhHHHHHHHHHHhccCCcEEEEeeccccCc-----C-----cHHHHHHHHHHcCCEEEEEE
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-----Q-----LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-----~-----~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.+....++.++.++|+|||++++..++.... . ...++.+.+. +|+++.+.
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~--~~~i~~~~ 258 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQ--DWEIVKYN 258 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhC--CCEEEEEe
Confidence 5568899999999999999976643332111 0 1234555554 48888875
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-11 Score=113.44 Aligned_cols=100 Identities=24% Similarity=0.392 Sum_probs=81.6
Q ss_pred ccEEEEEcCCccHHHHHHHHcC---CEEEEEecCCChhHHHHHHhcC----CeeEEEcccccCCCCCCceeEEEEccchh
Q 043503 277 IRIGLDIGGGTGTFAARMRERN---VTIITTSLNLDGPFNSFIASRG----LISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g---~~Vv~vdiD~s~~~le~a~~rg----~i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
..+|||+|||+|.++..+++.. .+++++ |+++.+++.++++. .+.++.+|+..+++++++||+|+++.+++
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~i--D~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGV--DFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEE--ECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeC
Confidence 3467999999999999999883 478887 66678877777653 37888899888888788999999988884
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
+ .++ ...++.++.++|+|||++++.++..
T Consensus 118 ~-~~~--~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 118 N-VTD--IQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred C-ccc--HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 4 555 7889999999999999999876543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=120.67 Aligned_cols=98 Identities=18% Similarity=0.179 Sum_probs=78.7
Q ss_pred cEEEEEcCCccH----HHHHHHHc-------CCEEEEEecCCChhHHHHHHhc---------------------------
Q 043503 278 RIGLDIGGGTGT----FAARMRER-------NVTIITTSLNLDGPFNSFIASR--------------------------- 319 (430)
Q Consensus 278 r~VLDIGcGtG~----~a~~La~~-------g~~Vv~vdiD~s~~~le~a~~r--------------------------- 319 (430)
-+|+|+|||||. ++..+++. +.+|+++ |+++.|++.|++.
T Consensus 101 ~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~--Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 101 VRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILAT--DIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred EEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEE--ECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 467999999995 56666654 3678888 7778999888763
Q ss_pred ------CCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 320 ------GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 320 ------g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
..+.|.+.|+...++++++||+|+|.+++++ .++.....++.+++++|+|||++++.+
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~y-f~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIY-FDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHh-CCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1367888888887777889999999999965 454457889999999999999999853
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.4e-11 Score=118.15 Aligned_cols=140 Identities=26% Similarity=0.277 Sum_probs=100.1
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHH-HH-HHhc--CC---eeEEEcccccCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFN-SF-IASR--GL---ISMHISVSQRLPFFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~l-e~-a~~r--g~---i~~~~~d~~~lpf~d 336 (430)
.+.+...+++-+.++|||||||+|.+..+|+.+|+ .|+|+ |++.... ++ +.++ |. +.......+.+|. .
T Consensus 104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGi--DP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~ 180 (315)
T PF08003_consen 104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGI--DPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L 180 (315)
T ss_pred HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEE--CCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c
Confidence 44555555555557789999999999999999987 57888 5554332 21 1111 22 2222246788886 7
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC--------------------cHHHHHHHHHH
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ--------------------LNETYVPMLDR 396 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~--------------------~~~~~~~ll~~ 396 (430)
++||+|+|+.++.|. .+ ....|.++...|+|||.+++.+.+..+.. -...+...+++
T Consensus 181 ~~FDtVF~MGVLYHr-r~--Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r 257 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHR-RS--PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLER 257 (315)
T ss_pred CCcCEEEEeeehhcc-CC--HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHH
Confidence 899999999999874 34 67899999999999999999877754433 12457889999
Q ss_pred cCCEEEEEEecccc
Q 043503 397 IGFKKLRWNVGMKL 410 (430)
Q Consensus 397 ~Gfk~l~~~~~~k~ 410 (430)
+||+.++..-...+
T Consensus 258 ~gF~~v~~v~~~~T 271 (315)
T PF08003_consen 258 AGFKDVRCVDVSPT 271 (315)
T ss_pred cCCceEEEecCccC
Confidence 99999987644443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-11 Score=113.55 Aligned_cols=108 Identities=17% Similarity=0.295 Sum_probs=78.4
Q ss_pred HHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHH----HHHhcCC-eeEEEcccccCCCCCCceeE
Q 043503 267 QVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNS----FIASRGL-ISMHISVSQRLPFFENTLDI 341 (430)
Q Consensus 267 ~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le----~a~~rg~-i~~~~~d~~~lpf~d~sfDl 341 (430)
+.....+.+ ++||+|||.|+.+.+|+++|..|+++ |.++..++ .|.++++ +...+.|.....++ +.||+
T Consensus 24 ~a~~~~~~g---~~LDlgcG~GRNalyLA~~G~~VtAv--D~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~ 97 (192)
T PF03848_consen 24 EAVPLLKPG---KALDLGCGEGRNALYLASQGFDVTAV--DISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDF 97 (192)
T ss_dssp HHCTTS-SS---EEEEES-TTSHHHHHHHHTT-EEEEE--ESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEE
T ss_pred HHHhhcCCC---cEEEcCCCCcHHHHHHHHCCCeEEEE--ECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCE
Confidence 334444444 45999999999999999999999999 55565443 3444565 78888898887764 68999
Q ss_pred EEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
|++..++. +.+.+....++..|...++|||++++..|+.
T Consensus 98 I~st~v~~-fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~ 136 (192)
T PF03848_consen 98 IVSTVVFM-FLQRELRPQIIENMKAATKPGGYNLIVTFME 136 (192)
T ss_dssp EEEESSGG-GS-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred EEEEEEec-cCCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence 99987774 4655578899999999999999999866653
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-11 Score=114.76 Aligned_cols=120 Identities=21% Similarity=0.215 Sum_probs=91.2
Q ss_pred ccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C--CeeEEEccc-ccCC--CCCCceeEEEEc
Q 043503 277 IRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G--LISMHISVS-QRLP--FFENTLDIVHSM 345 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~-~~lp--f~d~sfDlV~~~ 345 (430)
..+|||+|||+|.++..+++. +.+|+++ |+++.+++.++++ + .+.++++|+ +.++ +++++||+|++.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gV--D~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGI--EVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEE--EechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 356799999999999999887 5678888 6678888777643 3 378899998 7776 778899999996
Q ss_pred cchhhcCCc------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEE
Q 043503 346 HVLSNWIPD------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 346 ~~L~~~~~d------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
... .|... .....++.++.++|+|||.|++.. ........+.+.+++.|++..
T Consensus 119 ~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~---~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 119 FPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT---DWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc---CCHHHHHHHHHHHHhCccccc
Confidence 544 33221 014678999999999999999863 334455677888888998755
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=107.11 Aligned_cols=121 Identities=18% Similarity=0.178 Sum_probs=89.6
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCCCceeEEEEccchhhcC
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
++|||+|||+|.++..+++++.+|+++ |+++.+++.++++ +. +.++.+|....+ .++||+|+++..+.+..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTT--DINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLE 96 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEE--ECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCc
Confidence 346999999999999999997788888 6678887776654 32 677777875543 45899999987664322
Q ss_pred Cc------------------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 353 PD------------------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 353 ~d------------------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
++ .....++.++.|+|+|||.+++.+.... ....+.+.+++.||......
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~---~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN---GEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC---ChHHHHHHHHhCCCeEEEEE
Confidence 11 0146789999999999999998764422 23567788999999877654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-11 Score=120.86 Aligned_cols=118 Identities=20% Similarity=0.285 Sum_probs=84.4
Q ss_pred ccEEEEEcCCccHHHHHHHHcCCE-EEEEecCCChhHHHHHH----hcCCee-EEEcccccCCCCC-CceeEEEEccchh
Q 043503 277 IRIGLDIGGGTGTFAARMRERNVT-IITTSLNLDGPFNSFIA----SRGLIS-MHISVSQRLPFFE-NTLDIVHSMHVLS 349 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~~-Vv~vdiD~s~~~le~a~----~rg~i~-~~~~d~~~lpf~d-~sfDlV~~~~~L~ 349 (430)
.++|||+|||+|.+++.+++.|+. |+++|+| +..++.++ .++... ...........+. +.||+|++ +.+.
T Consensus 163 g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiD--p~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVA-NILA 239 (300)
T COG2264 163 GKTVLDVGCGSGILAIAAAKLGAKKVVGVDID--PQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVA-NILA 239 (300)
T ss_pred CCEEEEecCChhHHHHHHHHcCCceEEEecCC--HHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEe-hhhH
Confidence 356799999999999999999875 9999666 44444444 445432 1111122222333 59999999 4553
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+ -+..+..++.+.|||||+++++..+. +..+.+.+.+.+.||++++..
T Consensus 240 ~-----vl~~La~~~~~~lkpgg~lIlSGIl~---~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 240 E-----VLVELAPDIKRLLKPGGRLILSGILE---DQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred H-----HHHHHHHHHHHHcCCCceEEEEeehH---hHHHHHHHHHHhCCCeEeEEE
Confidence 3 26789999999999999999999773 234668888999999988754
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.6e-11 Score=120.87 Aligned_cols=97 Identities=21% Similarity=0.323 Sum_probs=79.2
Q ss_pred cEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcC--C-eeEEEcccccCCCCCCceeEEEEccchhhcCC
Q 043503 278 RIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRG--L-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg--~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~ 353 (430)
.+|||||||+|.++..+++. +++|+++ |+++.+++.++++. . +.+...|...+ +++||+|++..+++| +.
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~~V~gi--DlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~eh-vg 242 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGVSVVGV--TISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEH-VG 242 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhh-CC
Confidence 45699999999999999986 8899988 77899998888763 2 66677776654 478999999888865 54
Q ss_pred chhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
......++.++.++|||||++++..+.
T Consensus 243 ~~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 243 PKNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred hHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 445788999999999999999986654
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.6e-12 Score=120.63 Aligned_cols=95 Identities=18% Similarity=0.266 Sum_probs=77.7
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc--------CC----eeEEEcccccCCCCCCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR--------GL----ISMHISVSQRLPFFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r--------g~----i~~~~~d~~~lpf~d~sfDlV~~~ 345 (430)
+.|||+|||+|.++..|++.|++|+|+ |+++.|++.|+++ +. +.+.+.+.+.+. +.||+|+|+
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~GI--D~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTGI--DASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEee--cccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 447999999999999999999999998 8889999988876 21 334445555543 459999999
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
.+++| +.+ +..++..+.+.|+|||.+++++.-
T Consensus 166 evleH-V~d--p~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 166 EVLEH-VKD--PQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHH-HhC--HHHHHHHHHHHhCCCCceEeeehh
Confidence 99988 555 789999999999999999986543
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.2e-11 Score=109.59 Aligned_cols=114 Identities=20% Similarity=0.223 Sum_probs=87.8
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||+|||+|.++..++.+ +.+|+++ |.++.|++.++++ +. +.++.+|...++. +++||+|++.. .
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~~~~V~gi--D~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-~- 121 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARPELKVTLV--DSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-V- 121 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCCCCeEEEE--eCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc-c-
Confidence 45699999999999998864 6889988 6677777666543 43 8889999888776 77999999953 2
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.+ +..++.++.++|||||++++..+. .....+..+.+..|+.+.+..
T Consensus 122 ---~~--~~~~l~~~~~~LkpGG~lv~~~~~----~~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 122 ---AS--LSDLVELCLPLLKPGGRFLALKGR----DPEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ---cC--HHHHHHHHHHhcCCCeEEEEEeCC----ChHHHHHHHHHhcCceEeeeE
Confidence 22 678999999999999999986432 334557777788898866543
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.8e-11 Score=111.81 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=81.7
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-CCeeEEEcccccCCCCCCceeEEEEccchhhcCCc
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d 354 (430)
..|||+|||+|.++..+++. +.+++++ |+++.|++.|+++ ..+.+..+++.. |+++++||+|++..+++|+ +.
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~gi--DiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl-~p 120 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGV--EINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHI-NP 120 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEE--ECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhC-CH
Confidence 34699999999999999887 6888888 7789999999875 336788888877 8889999999999999775 44
Q ss_pred hhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 355 SMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
+.+..++.++.|++ ++++++.+++.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 46889999999998 57888887654
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-12 Score=107.07 Aligned_cols=89 Identities=30% Similarity=0.463 Sum_probs=55.6
Q ss_pred EEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCC-C-CCCceeEEEEccchhh
Q 043503 281 LDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLP-F-FENTLDIVHSMHVLSN 350 (430)
Q Consensus 281 LDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lp-f-~d~sfDlV~~~~~L~~ 350 (430)
||+|||+|.++..++++ +.+++++ |+|+.|++.++++ +. ......+..... . ..++||+|++..+++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~--D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGV--DISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEE--ESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999999998 7888888 6677777555544 22 223333222221 1 2359999999999965
Q ss_pred cCCchhHHHHHHHHHHhccCCcEE
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIF 374 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~l 374 (430)
+++ +..++..+.++|+|||+|
T Consensus 79 -l~~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 -LED--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S---HHHHHHHHTTT-TSS-EE
T ss_pred -hhh--HHHHHHHHHHHcCCCCCC
Confidence 555 889999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.8e-11 Score=111.85 Aligned_cols=124 Identities=14% Similarity=0.015 Sum_probs=90.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHh-cC-----------------CeeEEEcccccCCCC-CCc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIAS-RG-----------------LISMHISVSQRLPFF-ENT 338 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~-rg-----------------~i~~~~~d~~~lpf~-d~s 338 (430)
.+|||+|||.|..+..|+++|.+|+++ |+|+.+++.+.+ ++ .+.++++|+..++.. .++
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gv--D~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGV--ELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEE--eCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 356999999999999999999999999 777877776432 22 277889998777642 457
Q ss_pred eeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC-----cC---cHHHHHHHHHHcCCEEEEEE
Q 043503 339 LDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG-----SQ---LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 339 fDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~-----~~---~~~~~~~ll~~~Gfk~l~~~ 405 (430)
||.|+...++.| ++.+....++..+.++|||||++++..|.... +. ...++.+.+. .+|.+....
T Consensus 114 fD~i~D~~~~~~-l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~-~~~~i~~~~ 186 (213)
T TIGR03840 114 VDAVYDRAALIA-LPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYG-GHYEIELLE 186 (213)
T ss_pred cCEEEechhhcc-CCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhc-CCceEEEEe
Confidence 999999887765 56656888999999999999987766554311 11 2245665554 246655544
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.8e-11 Score=108.73 Aligned_cols=113 Identities=19% Similarity=0.312 Sum_probs=81.9
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHh----cCC--eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIAS----RGL--ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~----rg~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||+|||+|.++..++.. +.+|+++ |.++.|++.+++ .+. +.++.+|++.++ .+++||+|++.. +.
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~~~V~~i--D~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPELKLTLL--ESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA 119 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCCCeEEEE--eCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh
Confidence 45699999999999998866 4678888 666777665543 343 788999988864 467999999954 32
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHH---cCCEEEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDR---IGFKKLRW 404 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~---~Gfk~l~~ 404 (430)
+ ...++..+.++|+|||.+++.+ +......+..+.++ .||..++.
T Consensus 120 ----~--~~~~~~~~~~~LkpgG~lvi~~----~~~~~~~~~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 120 ----S--LNVLLELTLNLLKVGGYFLAYK----GKKYLDEIEEAKRKCQVLGVEPLEV 167 (181)
T ss_pred ----C--HHHHHHHHHHhcCCCCEEEEEc----CCCcHHHHHHHHHhhhhcCceEeec
Confidence 2 5668889999999999999853 23333444444444 89987764
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=114.28 Aligned_cols=122 Identities=22% Similarity=0.326 Sum_probs=93.0
Q ss_pred cEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHh----cCC---eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIAS----RGL---ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~----rg~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||||||-|.++++++++ |++|+|+ ++|+++.+.+++ +|. +.+...|.+.+. +.||-|++...++
T Consensus 74 ~~lLDiGCGWG~l~~~aA~~y~v~V~Gv--TlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfE 148 (283)
T COG2230 74 MTLLDIGCGWGGLAIYAAEEYGVTVVGV--TLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFE 148 (283)
T ss_pred CEEEEeCCChhHHHHHHHHHcCCEEEEe--eCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHH
Confidence 44599999999999999999 9999999 667777766655 355 666666666554 5599999999998
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc-----------------Cc--HHHHHHHHHHcCCEEEEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-----------------QL--NETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-----------------~~--~~~~~~ll~~~Gfk~l~~~ 405 (430)
|+..+ ....++..++++|+|||.+++-.+..... .+ ...+.+...+.||.+..+.
T Consensus 149 hvg~~-~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~ 222 (283)
T COG2230 149 HVGKE-NYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVE 222 (283)
T ss_pred HhCcc-cHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHh
Confidence 85543 68999999999999999998754443221 11 2456667888999888765
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.7e-11 Score=112.22 Aligned_cols=97 Identities=21% Similarity=0.304 Sum_probs=78.8
Q ss_pred EEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----C--Cee-EEEcccccCC-CCCCceeEEEEccchhh
Q 043503 280 GLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----G--LIS-MHISVSQRLP-FFENTLDIVHSMHVLSN 350 (430)
Q Consensus 280 VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g--~i~-~~~~d~~~lp-f~d~sfDlV~~~~~L~~ 350 (430)
||++|||||..-.+.-.. +.+|+.+ |+++.|.+.+.++ . .+. |++++.+++| ++|++||.|+|..++-.
T Consensus 80 vLEvgcGtG~Nfkfy~~~p~~svt~l--Dpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS 157 (252)
T KOG4300|consen 80 VLEVGCGTGANFKFYPWKPINSVTCL--DPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS 157 (252)
T ss_pred eEEecccCCCCcccccCCCCceEEEe--CCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec
Confidence 499999999877766544 8888887 7889988776543 1 144 8899999999 89999999999999954
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
..+ ..+.|.++.|+|||||.+++.+...
T Consensus 158 -ve~--~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 158 -VED--PVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred -cCC--HHHHHHHHHHhcCCCcEEEEEeccc
Confidence 333 7899999999999999998866553
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=109.59 Aligned_cols=124 Identities=21% Similarity=0.247 Sum_probs=94.8
Q ss_pred ccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccchh
Q 043503 277 IRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
..+|||+|||+|.++..+++.+.+|+++ |+++.|++.|+++ + .+.+.++|+..++ ++||+|++..++.
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~~v~gv--D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~ 130 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGAIVKAV--DISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLI 130 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCCEEEEE--ECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHH
Confidence 4567999999999999999998899988 6678888877664 2 4788888887765 7899999998886
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeecc-------------ccCc-------CcHHHHHHHHHHcCCEEEEEEe
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF-------------CFGS-------QLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~-------------~~~~-------~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
++ +...+..++.++.+++++|+++.+.... .... ...+++.++++++||+++....
T Consensus 131 ~~-~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 206 (219)
T TIGR02021 131 HY-PASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGL 206 (219)
T ss_pred hC-CHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeec
Confidence 64 4445788999999999988777653211 0000 0235688899999999887653
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.8e-11 Score=111.67 Aligned_cols=107 Identities=22% Similarity=0.319 Sum_probs=93.7
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcCC-eeEEEcccccCCCCCCceeE
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGL-ISMHISVSQRLPFFENTLDI 341 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~-i~~~~~d~~~lpf~d~sfDl 341 (430)
..+++..++....+.|.|+|||+|..+..|+++ +..++|+ |.|+.|++.|+++.. ..|..+|+..+. ++..+|+
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~Gi--DsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dl 95 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGI--DSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDL 95 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeec--cCCHHHHHHHHHhCCCCceecccHhhcC-CCCccch
Confidence 345666678788888999999999999999999 7888887 889999999998866 889999998876 6778999
Q ss_pred EEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
++++-++ ||.++ -..+|..+...|.|||.+.+-
T Consensus 96 lfaNAvl-qWlpd--H~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 96 LFANAVL-QWLPD--HPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred hhhhhhh-hhccc--cHHHHHHHHHhhCCCceEEEE
Confidence 9998888 99998 678999999999999999774
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-10 Score=109.25 Aligned_cols=122 Identities=14% Similarity=0.122 Sum_probs=84.8
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHH----HHHhcCCeeEEEcccccC----CCCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNS----FIASRGLISMHISVSQRL----PFFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le----~a~~rg~i~~~~~d~~~l----pf~d~sfDlV~~~~~ 347 (430)
.+|||+|||+|.++..+++. +.+|+++ |.++.|++ .++++..+.++.+|.... ++ ..+||+|++...
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~~g~V~av--D~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d~~ 150 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVEEGVVYAV--EFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIYQDVA 150 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcCCCeEEEE--ECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEEECCC
Confidence 45699999999999999987 3588888 66777765 334444577788887541 22 356999997322
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEE------eeccccCcCcHHHHHHHHHHcCCEEEEEEec
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWL------DRFFCFGSQLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl------~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
. ++ ....++.++.|+|||||.+++ .++-.......+...+.++++||+.+++..-
T Consensus 151 ~----p~-~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 151 Q----PN-QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred C----hh-HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence 1 11 134578999999999999999 3333222223344568899999999987643
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.9e-11 Score=116.63 Aligned_cols=90 Identities=23% Similarity=0.435 Sum_probs=73.7
Q ss_pred cEEEEEcCCccHHHHHHHHc-----CCEEEEEecCCChhHHHHHHhc-CCeeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRER-----NVTIITTSLNLDGPFNSFIASR-GLISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-----g~~Vv~vdiD~s~~~le~a~~r-g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+|||+|||+|.++..+++. +.+++++ |+++.+++.|+++ ..+.+.++|+..+|+++++||+|++...
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~gi--D~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGL--DISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEE--CCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 45799999999999998875 2367777 8889999998876 3478899999999999999999998532
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
+. .+.++.|+|||||+|++..+
T Consensus 161 -~~-----~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 161 -PC-----KAEELARVVKPGGIVITVTP 182 (272)
T ss_pred -CC-----CHHHHHhhccCCCEEEEEeC
Confidence 22 35799999999999998643
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-11 Score=112.31 Aligned_cols=125 Identities=22% Similarity=0.294 Sum_probs=99.1
Q ss_pred CCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCC-eeEEEccc-ccCCCCCCceeEEEEccchh
Q 043503 272 KPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGL-ISMHISVS-QRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 272 ~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~-i~~~~~d~-~~lpf~d~sfDlV~~~~~L~ 349 (430)
+|+...+-+||||||+|.-+..+.+.|..++|+ |+|+.|++.|.++.. -.++.+|+ +.+||.+++||-|++...+
T Consensus 46 lp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGv--DiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv- 122 (270)
T KOG1541|consen 46 LPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGV--DISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV- 122 (270)
T ss_pred CCCCCCcEEEEeccCCCcchheeccCCceEEee--cCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee-
Confidence 454456778999999999999999999988888 889999999987543 24566654 8899999999999996665
Q ss_pred hcC---------CchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCE
Q 043503 350 NWI---------PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFK 400 (430)
Q Consensus 350 ~~~---------~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk 400 (430)
+|. |...+..++..++.+|++|+..++ .|+...+...+.+.....++||.
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~-QfYpen~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL-QFYPENEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEE-EecccchHHHHHHHHHHHhhccC
Confidence 553 344567788889999999999998 45655555567777888889986
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-10 Score=105.82 Aligned_cols=115 Identities=16% Similarity=0.192 Sum_probs=84.0
Q ss_pred ccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 277 IRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
..+|||+|||+|.++..++++ +.+|+++ |+++.+++.++++ + .+.++.++.. .++ .++||+|++....
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~v--D~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~~ 107 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAI--ERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGSG 107 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCCc
Confidence 345799999999999999887 4688888 6667777666543 3 3677777763 233 3679999996543
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEE
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
. .+..++..+.++|+|||++++..... .....+..++++.||+.+..
T Consensus 108 ~------~~~~~l~~~~~~Lk~gG~lv~~~~~~---~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 108 G------NLTAIIDWSLAHLHPGGRLVLTFILL---ENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred c------CHHHHHHHHHHhcCCCeEEEEEEecH---hhHHHHHHHHHHCCCCcceE
Confidence 2 25678999999999999998865332 22356778899999975543
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=106.94 Aligned_cols=135 Identities=19% Similarity=0.234 Sum_probs=94.5
Q ss_pred EEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEccccc-C-CCCCCceeEEEEccchhhcCCch
Q 043503 279 IGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQR-L-PFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~-l-pf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
+|||+|||+|.++..+++. +.+++++ |+++.+++.+++++ +.++.+|+.. + ++++++||+|+++.+++| +++
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~~~~gi--D~s~~~i~~a~~~~-~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~-~~d- 90 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQVRGYGI--EIDQDGVLACVARG-VNVIQGDLDEGLEAFPDKSFDYVILSQTLQA-TRN- 90 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCCcEEEE--eCCHHHHHHHHHcC-CeEEEEEhhhcccccCCCCcCEEEEhhHhHc-CcC-
Confidence 4699999999999999876 6677777 77888888887765 4777888754 4 367889999999999954 666
Q ss_pred hHHHHHHHHHHhccCCcEEEEeec--------------cc---------cC-----cCcHHHHHHHHHHcCCEEEEEEec
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRF--------------FC---------FG-----SQLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f--------------~~---------~~-----~~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
...+++++.|+++++.. .+..+ .. .+ ....+++.+++++.||+++....-
T Consensus 91 -~~~~l~e~~r~~~~~ii-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 91 -PEEILDEMLRVGRHAIV-SFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred -HHHHHHHHHHhCCeEEE-EcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 77899999988775421 11000 00 00 012467889999999999987755
Q ss_pred ccccCCCchhHHH
Q 043503 408 MKLDRGVKKNEWY 420 (430)
Q Consensus 408 ~k~~~g~~~~~~~ 420 (430)
.....|+..-.||
T Consensus 169 ~~~~~~~~~~~~~ 181 (194)
T TIGR02081 169 DVDGRGGREVRWF 181 (194)
T ss_pred ccccccccccccC
Confidence 5544444433333
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=125.78 Aligned_cols=101 Identities=17% Similarity=0.303 Sum_probs=82.1
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C-CeeEEEcccccCC--CCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G-LISMHISVSQRLP--FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g-~i~~~~~d~~~lp--f~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.++..++++ +.+++++ |+++.|++.++++ + .+.++++|...+| +++++||+|+++.++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~kVtGI--DIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDKRIYGI--DISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 35699999999999988876 6789988 7788999888764 2 2577888988887 788999999999888
Q ss_pred hhcC---C-------chhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 349 SNWI---P-------DSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 349 ~~~~---~-------d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
++|. + ......++.++.|+|||||.+++.+..
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 6542 1 235788999999999999999997643
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-10 Score=117.43 Aligned_cols=122 Identities=11% Similarity=0.067 Sum_probs=89.8
Q ss_pred eeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C-----Ce
Q 043503 254 WLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G-----LI 322 (430)
Q Consensus 254 ~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g-----~i 322 (430)
-+|....++...+.+++.++.....+|||+|||+|.++..++++ +.+|+++ |.++.+++.++++ + .+
T Consensus 206 gVFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~v--D~S~~Av~~A~~N~~~n~~~~~~~v 283 (378)
T PRK15001 206 NVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFV--DESPMAVASSRLNVETNMPEALDRC 283 (378)
T ss_pred CccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcCcccCceE
Confidence 35666667776677777776544456799999999999999988 5788988 6677888777653 2 35
Q ss_pred eEEEcccccCCCCCCceeEEEEccchhhc--CCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 323 SMHISVSQRLPFFENTLDIVHSMHVLSNW--IPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 323 ~~~~~d~~~lpf~d~sfDlV~~~~~L~~~--~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.++..|.... +++.+||+|+|+..++.. +.+.....++.++.++|+|||.|++..
T Consensus 284 ~~~~~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 284 EFMINNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EEEEcccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 7777775331 245689999998776421 233346789999999999999999974
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.9e-10 Score=105.98 Aligned_cols=123 Identities=19% Similarity=0.326 Sum_probs=92.7
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCC-CCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLP-FFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lp-f~d~sfDlV~~~~~L~~~ 351 (430)
..|||||||+|.++..+++.+.+++++ |+++.+++.+.++ +. +.+...+...++ ..+++||+|++..++++
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~~~v~~i--D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~- 126 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLGADVTGI--DASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH- 126 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcCCeEEEE--cCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc-
Confidence 356999999999999999988898888 6667777766654 33 567777766654 34679999999988865
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeecccc--------------------CcC------cHHHHHHHHHHcCCEEEEEE
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF--------------------GSQ------LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~--------------------~~~------~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.++ ...++..+.++|+|||.+++..+... ... ..+++..++.+.||+.+...
T Consensus 127 ~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 127 VPD--PASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred cCC--HHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 555 67899999999999999998753110 000 22468889999999988653
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.16 E-value=5e-10 Score=95.29 Aligned_cols=92 Identities=24% Similarity=0.235 Sum_probs=70.2
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C--CeeEEEccccc-CCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQR-LPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~-lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.++..++++ +.+|+++ |+++.+.+.++++ + .+.++.++... ++...++||+|++....
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAI--ERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG 98 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEE--cCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence 46799999999999999987 4688888 6778877776543 3 36777777654 33334689999996543
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
. ....++.++.+.|+|||+|++.
T Consensus 99 ~------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 99 G------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred h------hHHHHHHHHHHHcCCCCEEEEE
Confidence 2 2568999999999999999985
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-10 Score=107.29 Aligned_cols=120 Identities=18% Similarity=0.298 Sum_probs=85.6
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCC---CCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLP---FFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lp---f~d~sfDlV~~~~ 346 (430)
.++||||||+|.++..++++ +..++++ |++..+++.+.++ + .+.++.+|+..++ ++++++|.|+++.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gv--D~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGI--EIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEE--EeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 45799999999999999988 5688888 6677887776543 3 4888999987654 4567999999965
Q ss_pred chhhcCCch------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcC-CEEEE
Q 043503 347 VLSNWIPDS------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIG-FKKLR 403 (430)
Q Consensus 347 ~L~~~~~d~------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~G-fk~l~ 403 (430)
.. .|.... ....++.++.|+|||||.|++.+. .....+.+.+.+.+.+ |..+.
T Consensus 96 pd-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td---~~~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 96 PD-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD---NEPLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred CC-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC---CHHHHHHHHHHHHhCCCeEecc
Confidence 43 443221 125689999999999999988642 2233444556666665 77654
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.5e-10 Score=104.78 Aligned_cols=123 Identities=20% Similarity=0.303 Sum_probs=93.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCC-CCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFF-ENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~-d~sfDlV~~~~~L~~ 350 (430)
.+|||+|||+|.++..+++.+.+++++ |.++.+++.++++ +. +.+...++..++.. +++||+|++..++++
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~~v~~i--D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGANVTGI--DASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCCeEEEE--eCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 456999999999999999888888888 6677777766553 33 77778887776644 478999999988855
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeecccc--------------------CcC------cHHHHHHHHHHcCCEEEEE
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF--------------------GSQ------LNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~--------------------~~~------~~~~~~~ll~~~Gfk~l~~ 404 (430)
..+ ...++.++.++|+|||.+++...... ... ...++.+++++.||.++..
T Consensus 125 -~~~--~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~ 201 (224)
T TIGR01983 125 -VPD--PQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDV 201 (224)
T ss_pred -CCC--HHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeee
Confidence 555 67899999999999999988653110 000 1245888999999998765
Q ss_pred E
Q 043503 405 N 405 (430)
Q Consensus 405 ~ 405 (430)
.
T Consensus 202 ~ 202 (224)
T TIGR01983 202 K 202 (224)
T ss_pred e
Confidence 4
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-09 Score=104.69 Aligned_cols=126 Identities=15% Similarity=0.017 Sum_probs=89.8
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHH-hcC-----------------CeeEEEcccccCCCC-CCc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIA-SRG-----------------LISMHISVSQRLPFF-ENT 338 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~-~rg-----------------~i~~~~~d~~~lpf~-d~s 338 (430)
.+|||+|||.|..+..|+++|.+|+++ |+++..++.+. +++ .+.++++|+..++.. ...
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~av--D~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGV--ELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEE--ccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 356999999999999999999999999 77777776543 332 267788888777533 258
Q ss_pred eeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEE-eeccccCc----C---cHHHHHHHHHHcCCEEEEEEec
Q 043503 339 LDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL-DRFFCFGS----Q---LNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 339 fDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl-~~f~~~~~----~---~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
||+|+...++.+ ++.+....++..+.++|+|||.+++ +..+.... . ..+++.+.+.. +|.+......
T Consensus 117 fd~v~D~~~~~~-l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~-~~~i~~~~~~ 191 (218)
T PRK13255 117 VDAVYDRAALIA-LPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAG-CFEIELLERQ 191 (218)
T ss_pred eeEEEehHhHhh-CCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcC-CceEEEeeec
Confidence 999999888855 5666789999999999999997444 43332111 1 23456666642 3666655533
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-10 Score=109.20 Aligned_cols=97 Identities=23% Similarity=0.252 Sum_probs=75.4
Q ss_pred ccEEEEEcCCccHHHHHHHHc----C--CEEEEEecCCChhHHHHHHhcC---CeeEEEcccccCCCCCCceeEEEEccc
Q 043503 277 IRIGLDIGGGTGTFAARMRER----N--VTIITTSLNLDGPFNSFIASRG---LISMHISVSQRLPFFENTLDIVHSMHV 347 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~----g--~~Vv~vdiD~s~~~le~a~~rg---~i~~~~~d~~~lpf~d~sfDlV~~~~~ 347 (430)
..+|||+|||+|.++..+++. | .+|+++ |+++.|++.++++. .+.+.+.+...+++++++||+|+|+.+
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gv--D~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAI--DPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEE--cCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 346799999999998888752 3 488887 88899999988762 256777777777777889999999999
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
++| .++.....++.++.|+++ |.+++.+
T Consensus 139 lhh-~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 139 LHH-LDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred eec-CChHHHHHHHHHHHHhcC--eeEEEec
Confidence 965 555456789999999998 4444443
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-10 Score=102.88 Aligned_cols=98 Identities=18% Similarity=0.249 Sum_probs=70.0
Q ss_pred cEEEEEcCCccHHHHHHHHcCC--EEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRERNV--TIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~--~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.++||+|||+|.++..+++++. +|+++ |+++.+++.++++ +. +.++..|... +.++++||+|+++..++
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~~~~~v~~v--Di~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRGPDAKVTAV--DINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTSTCEEEEEE--ESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SB
T ss_pred CeEEEecCChHHHHHHHHHhCCCCEEEEE--cCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchh
Confidence 4569999999999999999843 58887 5567777666543 33 6777777643 23478999999987663
Q ss_pred hcCC--chhHHHHHHHHHHhccCCcEEEEee
Q 043503 350 NWIP--DSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 350 ~~~~--d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.-.. ......++.+..+.|+|||.+++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 2111 1246789999999999999998743
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.3e-10 Score=110.71 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=85.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcC-----------CeeEEEcccccCCCCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRG-----------LISMHISVSQRLPFFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg-----------~i~~~~~d~~~lpf~d~sfDlV~~~~ 346 (430)
.+|||+|||+|.++..++++|.+|+++ |+++.|++.++++. .+.+...|.+.+ +++||+|+|..
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~~V~gv--D~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~ 220 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGAIVSAS--DISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLD 220 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCCEEEEE--ECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcC
Confidence 457999999999999999999999988 77899998887651 146667776543 57899999999
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeecc-------------ccCcC--------cHHHHHHHHHHcCCEEEEEE
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF-------------CFGSQ--------LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~-------------~~~~~--------~~~~~~~ll~~~Gfk~l~~~ 405 (430)
++.|+ ++.....++..+.+ +.+||.++..... ..+.. ..+++.++++++||++....
T Consensus 221 vL~H~-p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 221 VLIHY-PQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred EEEec-CHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 98764 44345566777765 4566654421100 00100 14678899999999987533
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.4e-10 Score=111.92 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=87.7
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+|||+|||+|+++..++..+.+++++ |+++.|++.++++ |. +.+..+|+.++|+++++||+|+++......
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~~~v~g~--Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~ 261 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMGAKVIGC--DIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRS 261 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhCCeEEEE--cCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCc
Confidence 357999999999999988889999998 6667777665543 43 678889999999888999999996433210
Q ss_pred --C----CchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 352 --I----PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 352 --~----~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
. .......++.++.|+|+|||++++...- . ..+.+.++.+|| ++.
T Consensus 262 ~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~--~----~~~~~~~~~~g~-i~~ 312 (329)
T TIGR01177 262 TTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT--R----IDLESLAEDAFR-VVK 312 (329)
T ss_pred ccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC--C----CCHHHHHhhcCc-chh
Confidence 1 1123578999999999999999875321 1 246677899999 554
|
This family is found exclusively in the Archaea. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.9e-11 Score=112.43 Aligned_cols=136 Identities=18% Similarity=0.285 Sum_probs=103.9
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCC-eeEEEcccccCC--CCCCceeE
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGL-ISMHISVSQRLP--FFENTLDI 341 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~-i~~~~~d~~~lp--f~d~sfDl 341 (430)
+.+++.....+..+++||+|||||-.+..+..+-....|+ |+|++|++.|.++|. -.+.+.++..+- ..+..||+
T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGv--DiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGV--DISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred HHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCC--chhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccc
Confidence 5556655666668899999999999999999887777877 889999999999988 344555554332 45678999
Q ss_pred EEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC-----------cH-HHHHHHHHHcCCEEEEEE
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-----------LN-ETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-----------~~-~~~~~ll~~~Gfk~l~~~ 405 (430)
|.+..++. ++.. ++.++.-+...|+|||.|.++.--..+.. .. .-+..+++..||.++...
T Consensus 192 i~AaDVl~-YlG~--Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 192 IVAADVLP-YLGA--LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred hhhhhHHH-hhcc--hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence 99999994 4655 89999999999999999998743221111 11 225668899999999876
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.3e-10 Score=107.28 Aligned_cols=141 Identities=16% Similarity=0.234 Sum_probs=103.4
Q ss_pred CchhHHHHHHH--ccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-------CCeeEEEc
Q 043503 259 GKLDYGIDQVL--SMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-------GLISMHIS 327 (430)
Q Consensus 259 ~~~~~~id~lL--~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~ 327 (430)
....+.+|.+| +..+....++|||+|||+|..+..++++ .++++++ ++++.+.++|.++ ..+.++++
T Consensus 25 ~~~~~~~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~V--Eiq~~~a~~A~~nv~ln~l~~ri~v~~~ 102 (248)
T COG4123 25 CGFRYGTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGV--EIQEEAAEMAQRNVALNPLEERIQVIEA 102 (248)
T ss_pred CccccccHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEE--EeCHHHHHHHHHHHHhCcchhceeEehh
Confidence 34455566554 2233333677899999999999999998 4889988 6668888887765 23899999
Q ss_pred ccccCC--CCCCceeEEEEccchh---------------hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHH
Q 043503 328 VSQRLP--FFENTLDIVHSMHVLS---------------NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETY 390 (430)
Q Consensus 328 d~~~lp--f~d~sfDlV~~~~~L~---------------~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~ 390 (430)
|...+. ..-.+||+|+|+..+. ++.....++..++...++|||||.+.+.+ ..+...++
T Consensus 103 Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~----r~erl~ei 178 (248)
T COG4123 103 DIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH----RPERLAEI 178 (248)
T ss_pred hHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe----cHHHHHHH
Confidence 987765 3345799999965432 12223358889999999999999999865 33445678
Q ss_pred HHHHHHcCCEEEEEE
Q 043503 391 VPMLDRIGFKKLRWN 405 (430)
Q Consensus 391 ~~ll~~~Gfk~l~~~ 405 (430)
..++.+.+|...+..
T Consensus 179 ~~~l~~~~~~~k~i~ 193 (248)
T COG4123 179 IELLKSYNLEPKRIQ 193 (248)
T ss_pred HHHHHhcCCCceEEE
Confidence 889999999877766
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-09 Score=102.29 Aligned_cols=125 Identities=19% Similarity=0.232 Sum_probs=90.3
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
.+|||+|||+|.++..+++.+..|+++ |+++.|++.++++ + .+.+..+|. +..+++||+|++..+++|
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~~~~v~~~--D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARRGAKVVAS--DISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHcCCEEEEE--ECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccCCcCEEEEcchhhc
Confidence 467999999999999999998888888 7778888887654 2 367777773 344688999999999866
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeec---------c----ccC--c-----CcHHHHHHHHHHcCCEEEEEEecc
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRF---------F----CFG--S-----QLNETYVPMLDRIGFKKLRWNVGM 408 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f---------~----~~~--~-----~~~~~~~~ll~~~Gfk~l~~~~~~ 408 (430)
+ ++.....++.++.+.+++|+.+.+... . ... . .....+.++++..||++.......
T Consensus 140 ~-~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 140 Y-PQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERIS 216 (230)
T ss_pred C-CHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeecc
Confidence 4 444578899999998766555443211 0 000 0 013568889999999988865433
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-09 Score=97.25 Aligned_cols=122 Identities=16% Similarity=0.207 Sum_probs=87.6
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC----eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL----ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~----i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
+++||+|||+|.++..+++++.+++++ |.++.+.+.++++ +. +.++..|... ++.+++||+|+++..+.
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~~v~~~--D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGKKVVGV--DINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYL 101 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcceEEEE--ECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcC
Confidence 356999999999999999999999988 6677777776543 22 6677777644 34556899999865442
Q ss_pred hcCC------------------chhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 350 NWIP------------------DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 350 ~~~~------------------d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
...+ ...+..++.++.++|+|||.+++.... ....+.+.+++.+.||++....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~---~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS---LTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc---cCCHHHHHHHHHHCCCeeeeee
Confidence 1000 112566899999999999998875432 1224668889999999877643
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-09 Score=102.41 Aligned_cols=134 Identities=19% Similarity=0.264 Sum_probs=93.4
Q ss_pred HHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCC
Q 043503 263 YGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPF 334 (430)
Q Consensus 263 ~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf 334 (430)
..++.++...+.. ..+|||+|||+|.++..+++. +.+++++ |+++.+.+.++++ +. +.++.+|+.. ++
T Consensus 75 ~l~~~~l~~~~~~-~~~ilDig~G~G~~~~~l~~~~~~~~v~~i--D~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~ 150 (251)
T TIGR03534 75 ELVEAALERLKKG-PLRVLDLGTGSGAIALALAKERPDARVTAV--DISPEALAVARKNAARLGLDNVTFLQSDWFE-PL 150 (251)
T ss_pred HHHHHHHHhcccC-CCeEEEEeCcHhHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cC
Confidence 3455555544432 235799999999999999987 5688888 6667777766543 33 7788888755 45
Q ss_pred CCCceeEEEEccchhh------cCCc-----------------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHH
Q 043503 335 FENTLDIVHSMHVLSN------WIPD-----------------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYV 391 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~------~~~d-----------------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~ 391 (430)
++++||+|+++..... +.++ .....++.++.++|+|||.+++..- ....+.+.
T Consensus 151 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~----~~~~~~~~ 226 (251)
T TIGR03534 151 PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG----YDQGEAVR 226 (251)
T ss_pred cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----ccHHHHHH
Confidence 6789999999643321 1111 0124678999999999999998642 22346688
Q ss_pred HHHHHcCCEEEEE
Q 043503 392 PMLDRIGFKKLRW 404 (430)
Q Consensus 392 ~ll~~~Gfk~l~~ 404 (430)
+++.+.||+.+..
T Consensus 227 ~~l~~~gf~~v~~ 239 (251)
T TIGR03534 227 ALFEAAGFADVET 239 (251)
T ss_pred HHHHhCCCCceEE
Confidence 8899999987664
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-09 Score=102.48 Aligned_cols=127 Identities=14% Similarity=0.134 Sum_probs=91.3
Q ss_pred CccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc------CCeeEEEcccccCCCCCCceeEEEEccch
Q 043503 276 TIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR------GLISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r------g~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
...++||+|+|.|+.+..+... --+|-.+ |+.+.+++.|++. +...+++...+.+....++||+|++++++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlV--Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLV--EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEE--ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEe--ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 4568899999999999988665 4455555 7788999988842 23678888888887556899999999999
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC------------cHHHHHHHHHHcCCEEEEEE
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ------------LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~------------~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.| ..|+++-.+|.++...|+|||.+++-+-.+.... ..+.+.++++++|+++++..
T Consensus 133 gh-LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 133 GH-LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp GG-S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred cc-CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 77 5566799999999999999999999776654432 23569999999999999855
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8e-10 Score=104.87 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=78.4
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC--------CCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP--------FFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp--------f~d~sfDlV~~~~ 346 (430)
.+|||+|||+|.++..++++ +.+|+++|++ + |.. ...+.++++|+...+ +.+++||+|++..
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~--~-~~~----~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~ 125 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDIL--P-MDP----IVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDM 125 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecc--c-ccC----CCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCC
Confidence 35799999999999999887 2589999664 3 211 122688899987753 5678999999965
Q ss_pred chhhcCCch---------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 347 VLSNWIPDS---------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 347 ~L~~~~~d~---------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+. ++.... ....+|.++.++|+|||.|++..|-. ....++...+ +..|..+...
T Consensus 126 ~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~---~~~~~~l~~l-~~~f~~v~~~ 188 (209)
T PRK11188 126 AP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG---EGFDEYLREI-RSLFTKVKVR 188 (209)
T ss_pred CC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC---cCHHHHHHHH-HhCceEEEEE
Confidence 44 333211 12568999999999999999976542 2222232222 2367777653
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=104.81 Aligned_cols=138 Identities=23% Similarity=0.347 Sum_probs=104.1
Q ss_pred CccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCch
Q 043503 276 TIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
...++||||+|.|..+..|+..-.+|.++ +.|..|....+++|.--+-..+.+ -.+.+||+|.|.+++.. ..+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aT--E~S~~Mr~rL~~kg~~vl~~~~w~---~~~~~fDvIscLNvLDR-c~~- 166 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYAT--EASPPMRWRLSKKGFTVLDIDDWQ---QTDFKFDVISCLNVLDR-CDR- 166 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEee--cCCHHHHHHHHhCCCeEEehhhhh---ccCCceEEEeehhhhhc-cCC-
Confidence 44567999999999999999887778887 889999999999987322222322 23568999999999976 333
Q ss_pred hHHHHHHHHHHhccCCcEEEEeecc------ccCc--C------------c----HHHHHHHHHHcCCEEEEEEeccccc
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRFF------CFGS--Q------------L----NETYVPMLDRIGFKKLRWNVGMKLD 411 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f~------~~~~--~------------~----~~~~~~ll~~~Gfk~l~~~~~~k~~ 411 (430)
+..+|.+|.+.|+|+|.+++.-.+ ..+. . . ...+.+.++.+||++.+|...+...
T Consensus 167 -P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~PYLc 245 (265)
T PF05219_consen 167 -PLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLPYLC 245 (265)
T ss_pred -HHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccCccc
Confidence 788999999999999999864322 2221 0 0 0113378899999999999999998
Q ss_pred CCCchhHHHh
Q 043503 412 RGVKKNEWYF 421 (430)
Q Consensus 412 ~g~~~~~~~l 421 (430)
.|--+.+.|+
T Consensus 246 EGD~~~~~Y~ 255 (265)
T PF05219_consen 246 EGDLYQSYYV 255 (265)
T ss_pred cCcccCceEE
Confidence 8876666654
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.6e-09 Score=99.63 Aligned_cols=123 Identities=18% Similarity=0.140 Sum_probs=85.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+|||+|||+|.++..++..+. +|+++ |+++.+++.++++ +. +.++.+|+.. .+++++||+|+++......
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~v--D~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAV--DISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEE--ECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence 4569999999999999998765 88888 6667777665543 43 6677777755 2456799999996433110
Q ss_pred CC------------------chhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEe
Q 043503 352 IP------------------DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 352 ~~------------------d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
.. ...+..++.++.++|+|||.+++.+--. .....+...+++.||.......
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~ 184 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL---SGVERTLTRLSEAGLDAEVVAS 184 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc---cCHHHHHHHHHHCCCCeEEEEe
Confidence 00 0124668889999999999999753221 1235677788889997666543
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-09 Score=109.98 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=79.5
Q ss_pred HHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHh----cCC--eeEEEcccccC--CCCC
Q 043503 267 QVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIAS----RGL--ISMHISVSQRL--PFFE 336 (430)
Q Consensus 267 ~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~----rg~--i~~~~~d~~~l--pf~d 336 (430)
.++....+....++||||||+|.++..+|.+ +..++|+ |++.++++.+.+ +|+ +.++.+|+..+ .+++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGI--EI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~ 190 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGI--EIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPS 190 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEE--ECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCC
Confidence 4444344333456899999999999999998 5778888 667777665543 343 78889998664 4778
Q ss_pred CceeEEEEccchhhcCCch----hHHHHHHHHHHhccCCcEEEEe
Q 043503 337 NTLDIVHSMHVLSNWIPDS----MLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~----~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+++|.|++.+.. .|.... ....++.++.|+|+|||.+.+.
T Consensus 191 ~s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 191 NSVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred CceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 999999996554 554321 1257999999999999999884
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-09 Score=109.42 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=80.4
Q ss_pred ecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHh----cCC-eeEEEcc
Q 043503 256 IDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIAS----RGL-ISMHISV 328 (430)
Q Consensus 256 ~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~----rg~-i~~~~~d 328 (430)
|.....+.....++..++.....+|||+|||+|.++..++++ +.+|+++ |+++.+++.+++ ++. ..++..|
T Consensus 176 Fs~~~lD~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~v--Dis~~Al~~A~~nl~~n~l~~~~~~~D 253 (342)
T PRK09489 176 FSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLS--DVSAAALESSRATLAANGLEGEVFASN 253 (342)
T ss_pred CCCCCCCHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCEEEEcc
Confidence 333334433344444333222235799999999999999987 4588888 666777776654 343 4455666
Q ss_pred cccCCCCCCceeEEEEccchhhcCC--chhHHHHHHHHHHhccCCcEEEEee
Q 043503 329 SQRLPFFENTLDIVHSMHVLSNWIP--DSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 329 ~~~lpf~d~sfDlV~~~~~L~~~~~--d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
... ..++.||+|+|+..++.... ......++.++.+.|+|||.+++..
T Consensus 254 ~~~--~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 254 VFS--DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred ccc--ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 533 23578999999887743221 2346789999999999999998753
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-09 Score=101.94 Aligned_cols=89 Identities=20% Similarity=0.238 Sum_probs=68.1
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~ 347 (430)
.+|||+|||+|.++..+++. +.+|+++ |.++.+.+.++++ + .+.++.+|+.......++||+|++...
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~i--D~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 151 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTV--EIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAA 151 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccC
Confidence 45699999999999998876 3688888 6667777766643 3 278888888765445679999999776
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+.+ . ..++.++|+|||++++.
T Consensus 152 ~~~-~--------~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 152 AST-I--------PSALVRQLKDGGVLVIP 172 (205)
T ss_pred cch-h--------hHHHHHhcCcCcEEEEE
Confidence 643 2 24788999999999884
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-09 Score=104.25 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=89.1
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEE
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVH 343 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~ 343 (430)
+.+....+....++|+|||+|+|.++..++++ +.+++..|+ +..++.+.+...+.++.+|+. -++|. +|+|+
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl---p~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~ 163 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL---PEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYL 163 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE----HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEE
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc---HhhhhccccccccccccccHH-hhhcc--cccee
Confidence 34444555667788999999999999999988 788887755 777777777777999999986 55555 99999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCC--cEEEEeeccccCcC
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPG--GIFWLDRFFCFGSQ 385 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPG--G~lvl~~f~~~~~~ 385 (430)
..+++++|.++ ....+|+++++.|+|| |.++|.+++..+..
T Consensus 164 l~~vLh~~~d~-~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 164 LRHVLHDWSDE-DCVKILRNAAAALKPGKDGRLLIIEMVLPDDR 206 (241)
T ss_dssp EESSGGGS-HH-HHHHHHHHHHHHSEECTTEEEEEEEEEECSSS
T ss_pred eehhhhhcchH-HHHHHHHHHHHHhCCCCCCeEEEEeeccCCCC
Confidence 99999887654 6889999999999999 99999888755443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.8e-09 Score=98.34 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=81.5
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccC-CCCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRL-PFFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~l-pf~d~sfDlV~~~~ 346 (430)
.+|||+|||+|.++..++.. +.+|+++ |.++.+++.++++ + .+.++.+|.... +..++.||.|++..
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~~~~~~v~av--D~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLVGETGKVYAV--DKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 45699999999999988764 4688888 6677787766543 4 267777877553 33346899999853
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEE
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKK 401 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~ 401 (430)
.. . .+..++.++.++|+|||++++.... .+......+.+++.||..
T Consensus 120 ~~----~--~~~~~l~~~~~~LkpgG~lv~~~~~---~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 120 GS----E--KLKEIISASWEIIKKGGRIVIDAIL---LETVNNALSALENIGFNL 165 (198)
T ss_pred Cc----c--cHHHHHHHHHHHcCCCcEEEEEeec---HHHHHHHHHHHHHcCCCe
Confidence 21 2 2678999999999999999874322 123356777888899853
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-09 Score=101.19 Aligned_cols=130 Identities=16% Similarity=0.203 Sum_probs=79.8
Q ss_pred ecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCC
Q 043503 256 IDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFF 335 (430)
Q Consensus 256 ~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~ 335 (430)
++..-.+..|+.+. ..|.. -+|-|+|||.+.+|..+. .+.+|...|+-.. + -.+...|+..+|++
T Consensus 55 WP~nPvd~iI~~l~-~~~~~--~viaD~GCGdA~la~~~~-~~~~V~SfDLva~---------n--~~Vtacdia~vPL~ 119 (219)
T PF05148_consen 55 WPVNPVDVIIEWLK-KRPKS--LVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP---------N--PRVTACDIANVPLE 119 (219)
T ss_dssp SSS-HHHHHHHHHC-TS-TT--S-EEEES-TT-HHHHH---S---EEEEESS-S---------S--TTEEES-TTS-S--
T ss_pred CCCCcHHHHHHHHH-hcCCC--EEEEECCCchHHHHHhcc-cCceEEEeeccCC---------C--CCEEEecCccCcCC
Confidence 34444555454443 23332 357999999999997754 4678888865221 1 24678899999999
Q ss_pred CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 336 ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 336 d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
++++|+|++...|- -.+ +..++.|+.|+|||||.++|.+.-..= ...+.....+++.||+.....
T Consensus 120 ~~svDv~VfcLSLM--GTn--~~~fi~EA~RvLK~~G~L~IAEV~SRf-~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 120 DESVDVAVFCLSLM--GTN--WPDFIREANRVLKPGGILKIAEVKSRF-ENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp TT-EEEEEEES-----SS---HHHHHHHHHHHEEEEEEEEEEEEGGG--S-HHHHHHHHHCTTEEEEEEE
T ss_pred CCceeEEEEEhhhh--CCC--cHHHHHHHHheeccCcEEEEEEecccC-cCHHHHHHHHHHCCCeEEecc
Confidence 99999999976662 233 889999999999999999998754322 234667788999999987744
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=92.00 Aligned_cols=97 Identities=20% Similarity=0.285 Sum_probs=73.7
Q ss_pred EEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHhc-------CCeeEEEcccccCC--CCCCceeEEEEccch
Q 043503 279 IGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIASR-------GLISMHISVSQRLP--FFENTLDIVHSMHVL 348 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~~~lp--f~d~sfDlV~~~~~L 348 (430)
+|||+|||+|.++..+++.+ .+++++|+ ++...+.++.+ ..+.++++|..... +++++||+|+++...
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi--~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDI--DPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEES--SHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEE--CHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 57999999999999999998 89999955 46666666543 23899999987765 778999999998666
Q ss_pred hhcCC-----chhHHHHHHHHHHhccCCcEEEEe
Q 043503 349 SNWIP-----DSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 349 ~~~~~-----d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
..... ......++.++.++|||||.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 43211 113567899999999999999875
|
... |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-09 Score=103.94 Aligned_cols=175 Identities=17% Similarity=0.309 Sum_probs=118.2
Q ss_pred cccceeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--C--CEEEEEecCCChhHHHHHHhcCC----
Q 043503 250 EKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--N--VTIITTSLNLDGPFNSFIASRGL---- 321 (430)
Q Consensus 250 e~~~~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g--~~Vv~vdiD~s~~~le~a~~rg~---- 321 (430)
++.+++.+++.+..-...++...... ..++|+||||.|.....+.+- + ..|+++ |.++..++..+++..
T Consensus 46 ~~~rFfkdR~wL~~Efpel~~~~~~~-~~~ilEvGCGvGNtvfPll~~~~n~~l~v~ac--Dfsp~Ai~~vk~~~~~~e~ 122 (264)
T KOG2361|consen 46 HENRFFKDRNWLLREFPELLPVDEKS-AETILEVGCGVGNTVFPLLKTSPNNRLKVYAC--DFSPRAIELVKKSSGYDES 122 (264)
T ss_pred ccccccchhHHHHHhhHHhhCccccC-hhhheeeccCCCcccchhhhcCCCCCeEEEEc--CCChHHHHHHHhccccchh
Confidence 44444444444443344444332222 114599999999888888776 3 677777 888888888877622
Q ss_pred -eeEEEccc--c--cCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC-------------
Q 043503 322 -ISMHISVS--Q--RLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG------------- 383 (430)
Q Consensus 322 -i~~~~~d~--~--~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~------------- 383 (430)
+...+.|+ . .-|.+.+++|+|.+.+++.. ++.+.....+.++.++|||||.+++-+|...+
T Consensus 123 ~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSA-i~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~ 201 (264)
T KOG2361|consen 123 RVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSA-IHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCIS 201 (264)
T ss_pred hhcccceeccchhccCCCCcCccceEEEEEEEec-cChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceee
Confidence 22223332 1 23467899999999999966 44446889999999999999999986654311
Q ss_pred --------cC-----cHHHHHHHHHHcCCEEEEEEeccc----ccCCCchhHHHhHhhccCC
Q 043503 384 --------SQ-----LNETYVPMLDRIGFKKLRWNVGMK----LDRGVKKNEWYFSAVLEKP 428 (430)
Q Consensus 384 --------~~-----~~~~~~~ll~~~Gfk~l~~~~~~k----~~~g~~~~~~~lsa~leKp 428 (430)
+. ..+++..++.++||..++..+... ..++....++++.+.++||
T Consensus 202 ~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~k~ 263 (264)
T KOG2361|consen 202 ENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVDCRLLVNRKKQLKMYRVWVQAKFQKP 263 (264)
T ss_pred cceEEccCCceeeeccHHHHHHHHHhcccchhcccceeeeeeehhccCccceEEEEEEeecC
Confidence 11 235688999999999776554422 2356778889999999988
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-09 Score=98.14 Aligned_cols=122 Identities=21% Similarity=0.321 Sum_probs=92.3
Q ss_pred cEEEEEcCCccHHHHHHHHcCCE--EEEEecCCChhHHHHHH---hc-CC---eeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRERNVT--IITTSLNLDGPFNSFIA---SR-GL---ISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~--Vv~vdiD~s~~~le~a~---~r-g~---i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.+...|++.|.+ .+|+ |.++..++.|+ ++ +. |.|.+.|...-.+..++||+|+--..+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~Gv--DYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGV--DYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCcccc--ccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 36799999999999999999654 4666 88887776553 22 33 889999987767788999999986555
Q ss_pred hhc-----CCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 349 SNW-----IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 349 ~~~-----~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
... .+.+.+..++..+.++|+|||.|+|+. |+- ..+++.+.++..||++....
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS--CN~--T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS--CNF--TKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEe--cCc--cHHHHHHHHhcCCeEEEEee
Confidence 321 123345668999999999999999974 533 35778889999999887644
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-09 Score=96.58 Aligned_cols=73 Identities=25% Similarity=0.279 Sum_probs=62.8
Q ss_pred cCCChhHHHHHHhc----C-----CeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 306 LNLDGPFNSFIASR----G-----LISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 306 iD~s~~~le~a~~r----g-----~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
+|+|+.|++.|+++ + .+.++++|++.+|+++++||+|++..++++ +++ ...++++++|+|||||.|++
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~-~~d--~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRN-VVD--RLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred EcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhc-CCC--HHHHHHHHHHHcCcCeEEEE
Confidence 48999999988654 1 378999999999999999999999999954 555 78999999999999999998
Q ss_pred eeccc
Q 043503 377 DRFFC 381 (430)
Q Consensus 377 ~~f~~ 381 (430)
.++..
T Consensus 80 ~d~~~ 84 (160)
T PLN02232 80 LDFNK 84 (160)
T ss_pred EECCC
Confidence 87754
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-08 Score=100.67 Aligned_cols=119 Identities=14% Similarity=0.143 Sum_probs=85.0
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.++..++.+ +.+|+++ |+++.+++.|+++ +. +.++.+|+.. ++++++||+|+++...
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~av--Dis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAV--DISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 46799999999999999987 5788888 6678887776654 43 7888888643 2345689999996321
Q ss_pred hh------------cCCc----------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEE
Q 043503 349 SN------------WIPD----------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 349 ~~------------~~~d----------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
.. +.+. .....++.++.++|+|||++++..-. ..+.+.+++...||.-...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-----~~~~v~~~~~~~~~~~~~~ 272 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-----SMEALEEAYPDVPFTWLEF 272 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-----CHHHHHHHHHhCCCceeee
Confidence 10 0110 12356889999999999999986421 2257888888899876543
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-08 Score=98.07 Aligned_cols=142 Identities=16% Similarity=0.222 Sum_probs=95.3
Q ss_pred cCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc------CCeeEEEcc
Q 043503 257 DNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR------GLISMHISV 328 (430)
Q Consensus 257 ~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r------g~i~~~~~d 328 (430)
+....+..++.++.........+|||+|||+|.++..++.. ..+++++ |+++.+++.++++ ..+.++.+|
T Consensus 89 pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~i--Dis~~~l~~a~~n~~~~~~~~i~~~~~d 166 (275)
T PRK09328 89 PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAV--DISPEALAVARRNAKHGLGARVEFLQGD 166 (275)
T ss_pred CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 33344555555553333223345799999999999999987 4788888 6677777777654 237888888
Q ss_pred cccCCCCCCceeEEEEccchhh------cCCc-----------------hhHHHHHHHHHHhccCCcEEEEeeccccCcC
Q 043503 329 SQRLPFFENTLDIVHSMHVLSN------WIPD-----------------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ 385 (430)
Q Consensus 329 ~~~lpf~d~sfDlV~~~~~L~~------~~~d-----------------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~ 385 (430)
... ++++++||+|+++..... ..++ .....++.++.++|+|||++++.. +..
T Consensus 167 ~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~----g~~ 241 (275)
T PRK09328 167 WFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI----GYD 241 (275)
T ss_pred ccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE----Cch
Confidence 643 233578999999643211 0000 123568888999999999999843 223
Q ss_pred cHHHHHHHHHHcCCEEEEEE
Q 043503 386 LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 386 ~~~~~~~ll~~~Gfk~l~~~ 405 (430)
..+.+..++.+.||..+...
T Consensus 242 ~~~~~~~~l~~~gf~~v~~~ 261 (275)
T PRK09328 242 QGEAVRALLAAAGFADVETR 261 (275)
T ss_pred HHHHHHHHHHhCCCceeEEe
Confidence 34668889999999866543
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.8e-09 Score=99.63 Aligned_cols=89 Identities=17% Similarity=0.121 Sum_probs=68.6
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||||||+|.++..+++. +.+|+++ |+++.+.+.++++ | .+.++.+|......+++.||+|++....
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~v--E~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~ 155 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTI--ERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAG 155 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCc
Confidence 45699999999999988876 3688888 6678888777654 3 3888999987655567899999996554
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.+ +...+.+.|||||.+++.
T Consensus 156 ~~---------~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 156 PD---------IPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred cc---------chHHHHHhhCCCcEEEEE
Confidence 22 234667789999999884
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.2e-09 Score=101.82 Aligned_cols=123 Identities=19% Similarity=0.234 Sum_probs=86.7
Q ss_pred cceeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----CC-e-e
Q 043503 252 SRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----GL-I-S 323 (430)
Q Consensus 252 ~~~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----g~-i-~ 323 (430)
..-+|..+..|..-+-+++.++......|||+|||.|.+++.+++.. .+++-+ |.+...++.++++ +. . .
T Consensus 134 ~pGVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmv--Dvn~~Av~~ar~Nl~~N~~~~~~ 211 (300)
T COG2813 134 LPGVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLV--DVNARAVESARKNLAANGVENTE 211 (300)
T ss_pred CCCCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEE--ecCHHHHHHHHHhHHHcCCCccE
Confidence 33467777788877777777765544577999999999999999984 577777 5556666666544 33 2 3
Q ss_pred EEEcccccCCCCCCceeEEEEccchhhcCCc--hhHHHHHHHHHHhccCCcEEEEee
Q 043503 324 MHISVSQRLPFFENTLDIVHSMHVLSNWIPD--SMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 324 ~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d--~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
++..+... +..+ +||+|+|+..++.-..- ....+++.+..+.|++||.+|+.-
T Consensus 212 v~~s~~~~-~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 212 VWASNLYE-PVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred EEEecccc-cccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 45554322 2334 99999999888543221 123489999999999999999863
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.6e-09 Score=100.45 Aligned_cols=141 Identities=18% Similarity=0.134 Sum_probs=97.4
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHH-hcC-----------------CeeEEE
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIA-SRG-----------------LISMHI 326 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~-~rg-----------------~i~~~~ 326 (430)
+.+++.......-.+||..|||.|.-+..|+++|.+|+|+ |+++..++.+. +++ .|.+++
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGv--Dls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGV--DLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEE--ES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEE--ecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 3344433233333467999999999999999999999998 77787777663 332 257889
Q ss_pred cccccCCCCC-CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc-ccC----cC---cHHHHHHHHHHc
Q 043503 327 SVSQRLPFFE-NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF-CFG----SQ---LNETYVPMLDRI 397 (430)
Q Consensus 327 ~d~~~lpf~d-~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~-~~~----~~---~~~~~~~ll~~~ 397 (430)
+|+-.++-.. ++||+|+-..++. .++.+....+...+.++|+|||.+++..+. ... +. ..+++.+++. .
T Consensus 104 gDfF~l~~~~~g~fD~iyDr~~l~-Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~ 181 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLIYDRTFLC-ALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-P 181 (218)
T ss_dssp S-TTTGGGSCHHSEEEEEECSSTT-TS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-T
T ss_pred cccccCChhhcCCceEEEEecccc-cCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-C
Confidence 9988776433 4799999988884 466678999999999999999995443322 211 11 2356777777 8
Q ss_pred CCEEEEEEeccc
Q 043503 398 GFKKLRWNVGMK 409 (430)
Q Consensus 398 Gfk~l~~~~~~k 409 (430)
+|++........
T Consensus 182 ~f~i~~l~~~~~ 193 (218)
T PF05724_consen 182 GFEIEELEEEDS 193 (218)
T ss_dssp TEEEEEEEEEE-
T ss_pred CcEEEEEecccc
Confidence 899887775443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-08 Score=103.83 Aligned_cols=140 Identities=17% Similarity=0.174 Sum_probs=95.7
Q ss_pred cCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC-eeEEEccc
Q 043503 257 DNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL-ISMHISVS 329 (430)
Q Consensus 257 ~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~ 329 (430)
+....+..++.++...+.+ .++||+|||+|.++..++.. +.+|+++ |+++.+++.++++ +. +.++.+|.
T Consensus 234 PRpeTE~LVe~aL~~l~~~--~rVLDLGcGSG~IaiaLA~~~p~a~VtAV--DiS~~ALe~AreNa~~~g~rV~fi~gDl 309 (423)
T PRK14966 234 PRPETEHLVEAVLARLPEN--GRVWDLGTGSGAVAVTVALERPDAFVRAS--DISPPALETARKNAADLGARVEFAHGSW 309 (423)
T ss_pred CCccHHHHHHHhhhccCCC--CEEEEEeChhhHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcCCcEEEEEcch
Confidence 3444555566666544422 35799999999999998865 6788888 6678888877654 33 78888887
Q ss_pred ccCCC-CCCceeEEEEccchhhcC--------------------Cc--hhHHHHHHHHHHhccCCcEEEEeeccccCcCc
Q 043503 330 QRLPF-FENTLDIVHSMHVLSNWI--------------------PD--SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQL 386 (430)
Q Consensus 330 ~~lpf-~d~sfDlV~~~~~L~~~~--------------------~d--~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~ 386 (430)
....+ .+++||+|+|+.....-. .+ +..+.++.++.+.|+|||.+++.. +...
T Consensus 310 ~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi----G~~Q 385 (423)
T PRK14966 310 FDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH----GFDQ 385 (423)
T ss_pred hccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE----CccH
Confidence 54333 245899999965331100 00 123467778889999999988743 2334
Q ss_pred HHHHHHHHHHcCCEEEEE
Q 043503 387 NETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 387 ~~~~~~ll~~~Gfk~l~~ 404 (430)
.+.+.+++.+.||..++.
T Consensus 386 ~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 386 GAAVRGVLAENGFSGVET 403 (423)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 567888999999986654
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.4e-09 Score=99.20 Aligned_cols=89 Identities=17% Similarity=0.094 Sum_probs=67.1
Q ss_pred cEEEEEcCCccHHHHHHHHcC---CEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRERN---VTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g---~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||||||+|.+++.+++.. .+|+++ |.++.+.+.|+++ | .+.++.+|.........+||+|++....
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~v--D~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSI--ERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAG 156 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEE--eCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCCc
Confidence 456999999999999999873 358888 6678888777654 4 3788888876654445689999986544
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.+ +...+.+.|+|||++++.
T Consensus 157 ~~---------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 157 PK---------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred cc---------ccHHHHHhcCcCcEEEEE
Confidence 22 234678899999999884
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.9e-09 Score=99.14 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=88.6
Q ss_pred cEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccc-cCC-CCCCceeEEEEccchhhcCCc
Q 043503 278 RIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQ-RLP-FFENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~-~lp-f~d~sfDlV~~~~~L~~~~~d 354 (430)
.+|||+|||.|.+..+|.+. ++++.|+ ++++..+..+.++|+ .++++|++ .++ |+|++||.|+++.++.+ +..
T Consensus 15 srVLDLGCGdG~LL~~L~~~k~v~g~Gv--Eid~~~v~~cv~rGv-~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~-~~~ 90 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEKQVDGYGV--EIDPDNVAACVARGV-SVIQGDLDEGLADFPDQSFDYVILSQTLQA-VRR 90 (193)
T ss_pred CEEEecCCCchHHHHHHHHhcCCeEEEE--ecCHHHHHHHHHcCC-CEEECCHHHhHhhCCCCCccEEehHhHHHh-HhH
Confidence 34599999999999999885 8888888 555777788888887 67888764 454 88999999999999955 444
Q ss_pred hhHHHHHHHHHHhccCCcEEEEe--ec--------------cccC----------cC----cHHHHHHHHHHcCCEEEEE
Q 043503 355 SMLEFTLYDIYRLLRPGGIFWLD--RF--------------FCFG----------SQ----LNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lvl~--~f--------------~~~~----------~~----~~~~~~~ll~~~Gfk~l~~ 404 (430)
.+.+|.|+.|+-| ..+++ .| ++.. +. ..+++..++++.|+++++.
T Consensus 91 --P~~vL~EmlRVgr---~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~ 165 (193)
T PF07021_consen 91 --PDEVLEEMLRVGR---RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEER 165 (193)
T ss_pred --HHHHHHHHHHhcC---eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEE
Confidence 7889999988855 33321 11 0000 01 2467888999999999976
Q ss_pred Ee
Q 043503 405 NV 406 (430)
Q Consensus 405 ~~ 406 (430)
..
T Consensus 166 ~~ 167 (193)
T PF07021_consen 166 VF 167 (193)
T ss_pred EE
Confidence 54
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-08 Score=99.83 Aligned_cols=123 Identities=17% Similarity=0.210 Sum_probs=83.7
Q ss_pred cEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChh----HHHHHHhcCCeeEEEccccc---CCCCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGP----FNSFIASRGLISMHISVSQR---LPFFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~----~le~a~~rg~i~~~~~d~~~---lpf~d~sfDlV~~~~~ 347 (430)
.+|||+|||+|.++..+++. + .+|+++| +++. +++.++.+..+.++..|+.. +.....+||+|++...
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD--~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVE--FSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA 211 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEE--CcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCC
Confidence 45799999999999999998 2 5799984 5554 55666666567777888743 2223458999999643
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeecc-ccCcC-cHHHH----HHHHHHcCCEEEEEEec
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF-CFGSQ-LNETY----VPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~-~~~~~-~~~~~----~~ll~~~Gfk~l~~~~~ 407 (430)
.++ ....++.++.++|||||+|++..-. +.+.. ..+++ .+.+++.||+.++...-
T Consensus 212 ----~pd-q~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L 272 (293)
T PTZ00146 212 ----QPD-QARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTL 272 (293)
T ss_pred ----Ccc-hHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 233 2556778999999999999984211 11111 11222 36789999998876543
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.5e-08 Score=98.81 Aligned_cols=141 Identities=16% Similarity=0.188 Sum_probs=91.9
Q ss_pred cCCchhHHHHHHHccC-CCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC---eeEEE
Q 043503 257 DNGKLDYGIDQVLSMK-PLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL---ISMHI 326 (430)
Q Consensus 257 ~~~~~~~~id~lL~~~-p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~ 326 (430)
+.......++..+... +.....+|||+|||+|.++..++.. +.+|+++ |+++.+++.++++ +. +.++.
T Consensus 94 Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~av--Dis~~al~~a~~n~~~~~~~~~v~~~~ 171 (284)
T TIGR00536 94 PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAV--DISPDALAVAEENAEKNQLEHRVEFIQ 171 (284)
T ss_pred CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 3333444455554332 2222146799999999999999987 4788888 6677777777654 32 78888
Q ss_pred cccccCCCCCCceeEEEEccchh------------hcCCc----------hhHHHHHHHHHHhccCCcEEEEeeccccCc
Q 043503 327 SVSQRLPFFENTLDIVHSMHVLS------------NWIPD----------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGS 384 (430)
Q Consensus 327 ~d~~~lpf~d~sfDlV~~~~~L~------------~~~~d----------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~ 384 (430)
+|... ++++++||+|+++.... ++.|. .....++.++.+.|+|||++++..- .
T Consensus 172 ~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g----~ 246 (284)
T TIGR00536 172 SNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG----N 246 (284)
T ss_pred Cchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC----c
Confidence 88644 34455899999962211 11111 1356789999999999999988542 2
Q ss_pred CcHHHHHHHHH-HcCCEEEEE
Q 043503 385 QLNETYVPMLD-RIGFKKLRW 404 (430)
Q Consensus 385 ~~~~~~~~ll~-~~Gfk~l~~ 404 (430)
.....+.+++. ..||..+..
T Consensus 247 ~q~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 247 WQQKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred cHHHHHHHHHHhcCCCceeEE
Confidence 23356677777 468876554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.9e-09 Score=102.76 Aligned_cols=99 Identities=11% Similarity=0.087 Sum_probs=72.8
Q ss_pred CccEEEEEcCCccHHHHHH-HH-c--CCEEEEEecCCChhHHHHHHhc--------CCeeEEEcccccCCCCCCceeEEE
Q 043503 276 TIRIGLDIGGGTGTFAARM-RE-R--NVTIITTSLNLDGPFNSFIASR--------GLISMHISVSQRLPFFENTLDIVH 343 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~L-a~-~--g~~Vv~vdiD~s~~~le~a~~r--------g~i~~~~~d~~~lpf~d~sfDlV~ 343 (430)
..++|+|||||.|.++..+ +. . +.+++++ |.++.+++.|++. ..+.|..+|+...+-..+.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~gi--D~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNF--DIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEE--eCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence 3466799999988554443 32 2 5678888 5567777666542 238999999876543357899999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+. ++++|.+. ....++..+.+.|+|||++++-.
T Consensus 201 ~~-ALi~~dk~-~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 201 LA-ALVGMDKE-EKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred Ee-cccccccc-cHHHHHHHHHHhcCCCcEEEEec
Confidence 97 88676433 47899999999999999999864
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3e-09 Score=101.65 Aligned_cols=97 Identities=21% Similarity=0.322 Sum_probs=72.8
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEc-------ccccCCCCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHIS-------VSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~-------d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
|.++|+|||+|.-++.+++.--+|+++ |+++.|++.|++.-.+..... +...|--.+++.|+|.|.-++ |
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIat--D~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~-H 111 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIAT--DVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV-H 111 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheee--cCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH-H
Confidence 368999999997777777777788988 888999999987755333221 223333348999999999999 8
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
|.+ ++.+++++.|+||+.|-++....+
T Consensus 112 WFd---le~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 112 WFD---LERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred hhc---hHHHHHHHHHHcCCCCCEEEEEEc
Confidence 873 789999999999997744333333
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.5e-08 Score=95.50 Aligned_cols=140 Identities=16% Similarity=0.225 Sum_probs=92.1
Q ss_pred cCCchhHHHHHHHccCCC-CCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CCeeEEEccc
Q 043503 257 DNGKLDYGIDQVLSMKPL-GTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GLISMHISVS 329 (430)
Q Consensus 257 ~~~~~~~~id~lL~~~p~-~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~ 329 (430)
+.......++.++...+. ....+|||+|||+|.++..+++. +.+|+++ |+++.+++.++++ + ..++.+|.
T Consensus 66 pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~v--Dis~~al~~A~~N~~~~~-~~~~~~D~ 142 (251)
T TIGR03704 66 PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAA--DIDPAAVRCARRNLADAG-GTVHEGDL 142 (251)
T ss_pred CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcC-CEEEEeec
Confidence 334445555655543321 12236799999999999999876 5688888 6667777776654 3 47788886
Q ss_pred cc-CCC-CCCceeEEEEccchhh-------------cCC--------c--hhHHHHHHHHHHhccCCcEEEEeeccccCc
Q 043503 330 QR-LPF-FENTLDIVHSMHVLSN-------------WIP--------D--SMLEFTLYDIYRLLRPGGIFWLDRFFCFGS 384 (430)
Q Consensus 330 ~~-lpf-~d~sfDlV~~~~~L~~-------------~~~--------d--~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~ 384 (430)
.. ++- ..++||+|+++..... +.+ + +....++..+.+.|+|||++++.+- .
T Consensus 143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~----~ 218 (251)
T TIGR03704 143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS----E 218 (251)
T ss_pred hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC----c
Confidence 54 221 1357999999743311 000 0 1135788888899999999998642 2
Q ss_pred CcHHHHHHHHHHcCCEEEE
Q 043503 385 QLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 385 ~~~~~~~~ll~~~Gfk~l~ 403 (430)
.....+..++++.||+...
T Consensus 219 ~~~~~v~~~l~~~g~~~~~ 237 (251)
T TIGR03704 219 RQAPLAVEAFARAGLIARV 237 (251)
T ss_pred chHHHHHHHHHHCCCCcee
Confidence 2346688889999987554
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.6e-08 Score=98.16 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=83.7
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.++..++.. +.+|+++ |+++.+++.|+++ + .+.++.+|+.. ++++++||+|+++...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~av--Dis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAV--DISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEE--eCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCC
Confidence 46799999999999999987 5788888 6678887776654 4 27888888643 2345689999996321
Q ss_pred h------------hcCCc----------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEE
Q 043503 349 S------------NWIPD----------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 349 ~------------~~~~d----------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
. ++.|. .....++.++.+.|+|||++++..-. . ...+..++.+.||.....
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~----~-~~~~~~~~~~~~~~~~~~ 284 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN----S-RVHLEEAYPDVPFTWLEF 284 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc----C-HHHHHHHHhhCCCEEEEe
Confidence 1 01111 12357889999999999999985322 1 345777788888765543
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.4e-08 Score=92.68 Aligned_cols=94 Identities=19% Similarity=0.226 Sum_probs=65.0
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC--------CCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP--------FFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp--------f~d~sfDlV~~~~ 346 (430)
.+|||+|||+|.++..++++ ..+|+++|++ +.+ ....+.++.+|....+ +++++||+|++..
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis--~~~-----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~ 106 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQ--PMK-----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDA 106 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEecc--ccc-----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCC
Confidence 45699999999999988876 3478988554 432 1223567777775532 4567899999853
Q ss_pred ch---hhcCCc-----hhHHHHHHHHHHhccCCcEEEEee
Q 043503 347 VL---SNWIPD-----SMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 347 ~L---~~~~~d-----~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.. ..|..+ +....++.++.++|+|||++++..
T Consensus 107 ~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 107 APNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 21 111111 124679999999999999999864
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-08 Score=98.74 Aligned_cols=127 Identities=17% Similarity=0.257 Sum_probs=88.3
Q ss_pred cCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCC
Q 043503 257 DNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFE 336 (430)
Q Consensus 257 ~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d 336 (430)
+..-++..|+.+ ...+.. -+|-|+|||.+.+|. .....|..+|+- + . .-.++..|+.++|++|
T Consensus 164 P~nPld~ii~~i-k~r~~~--~vIaD~GCGEakiA~---~~~~kV~SfDL~--a-------~--~~~V~~cDm~~vPl~d 226 (325)
T KOG3045|consen 164 PENPLDVIIRKI-KRRPKN--IVIADFGCGEAKIAS---SERHKVHSFDLV--A-------V--NERVIACDMRNVPLED 226 (325)
T ss_pred CCChHHHHHHHH-HhCcCc--eEEEecccchhhhhh---ccccceeeeeee--c-------C--CCceeeccccCCcCcc
Confidence 444444444443 223332 247999999999886 334567776442 1 0 1256788999999999
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
++.|++++...| +..+ +..++.|++|+|+|||.+||.+.-.. -.....+...+...||......
T Consensus 227 ~svDvaV~CLSL--Mgtn--~~df~kEa~RiLk~gG~l~IAEv~SR-f~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 227 ESVDVAVFCLSL--MGTN--LADFIKEANRILKPGGLLYIAEVKSR-FSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred CcccEEEeeHhh--hccc--HHHHHHHHHHHhccCceEEEEehhhh-cccHHHHHHHHHHcCCeeeehh
Confidence 999999986555 2344 88999999999999999999764421 1233568889999999876544
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-08 Score=79.66 Aligned_cols=94 Identities=22% Similarity=0.323 Sum_probs=72.2
Q ss_pred EEEEcCCccHHHHHHHH-cCCEEEEEecCCChhHHHHHH---hc---CCeeEEEcccccCCC-CCCceeEEEEccchhhc
Q 043503 280 GLDIGGGTGTFAARMRE-RNVTIITTSLNLDGPFNSFIA---SR---GLISMHISVSQRLPF-FENTLDIVHSMHVLSNW 351 (430)
Q Consensus 280 VLDIGcGtG~~a~~La~-~g~~Vv~vdiD~s~~~le~a~---~r---g~i~~~~~d~~~lpf-~d~sfDlV~~~~~L~~~ 351 (430)
++|+|||+|.++..+++ .+.+++++ |.++...+.+. .. ..+.++..+...... ..++||+|++..++.++
T Consensus 2 ildig~G~G~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 2 VLDLGCGTGALALALASGPGARVTGV--DISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred eEEEcCCccHHHHHHhcCCCCEEEEE--eCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 69999999999999998 47788888 55566665554 11 227778888766553 56789999998887442
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
......++..+.+.|+|||.+++.
T Consensus 80 --~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 --VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 234788999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.8e-08 Score=94.58 Aligned_cols=99 Identities=13% Similarity=0.017 Sum_probs=81.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc------------------CCeeEEEcccccCCCC---C
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR------------------GLISMHISVSQRLPFF---E 336 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r------------------g~i~~~~~d~~~lpf~---d 336 (430)
.+||+.|||.|.-+..|+++|++|+|+ |+|+..++.+.++ +.+.++++|+..++.. .
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~V~Gv--DlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVKVIGI--ELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCcEEEE--ecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 456999999999999999999999999 7777777665331 2378999999888632 2
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
+.||+|.-..++.+ ++.+....+...+.++|+|||.+++..+
T Consensus 123 ~~fD~VyDra~~~A-lpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 123 PVFDIWYDRGAYIA-LPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CCcCeeeeehhHhc-CCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 68999999888865 5666899999999999999999887654
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.5e-08 Score=92.17 Aligned_cols=117 Identities=17% Similarity=0.132 Sum_probs=76.5
Q ss_pred ccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C--CeeEEEccccc-CCCCCCceeEEEEccc
Q 043503 277 IRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQR-LPFFENTLDIVHSMHV 347 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~-lpf~d~sfDlV~~~~~ 347 (430)
..+|||+|||+|.++..+++. +.+|+++ |.++.+++.++++ + .+.++.+|+.. ++.....+|.|+...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~v--D~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~- 117 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAI--ERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG- 117 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEE--eCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-
Confidence 346799999999999999865 5788888 6667887776643 3 37788887643 222223456665421
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHH---cCCEEEEEE
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDR---IGFKKLRWN 405 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~---~Gfk~l~~~ 405 (430)
.. ....++.++.++|+|||+|++.... .+......+.++. .++.+++..
T Consensus 118 ----~~--~~~~~l~~~~~~LkpgG~li~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (196)
T PRK07402 118 ----GR--PIKEILQAVWQYLKPGGRLVATASS---LEGLYAISEGLAQLQARNIEVVQAA 169 (196)
T ss_pred ----Cc--CHHHHHHHHHHhcCCCeEEEEEeec---HHHHHHHHHHHHhcCCCCceEEEEE
Confidence 11 2678999999999999999987532 1112223344444 456666543
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=100.06 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=78.7
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc------CC-eeEEEccccc-CC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR------GL-ISMHISVSQR-LP 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r------g~-i~~~~~d~~~-lp 333 (430)
.+.+...++. ..+|||+|||+|..+..+++. +.+++++ |+|+.|++.+.++ +. +.++++|+.. ++
T Consensus 54 ~~~ia~~~~~--~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~i--DiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~ 129 (301)
T TIGR03438 54 ADEIAAATGA--GCELVELGSGSSRKTRLLLDALRQPARYVPI--DISADALKESAAALAADYPQLEVHGICADFTQPLA 129 (301)
T ss_pred HHHHHHhhCC--CCeEEecCCCcchhHHHHHHhhccCCeEEEE--ECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh
Confidence 3444444432 235799999999999999987 5788888 7889998887654 12 5667888765 44
Q ss_pred CCCC----ceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecccc
Q 043503 334 FFEN----TLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF 382 (430)
Q Consensus 334 f~d~----sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~ 382 (430)
++.. ...++++...+.++ +.+....+|+++.++|+|||.|++.--.+.
T Consensus 130 ~~~~~~~~~~~~~~~gs~~~~~-~~~e~~~~L~~i~~~L~pgG~~lig~d~~~ 181 (301)
T TIGR03438 130 LPPEPAAGRRLGFFPGSTIGNF-TPEEAVAFLRRIRQLLGPGGGLLIGVDLVK 181 (301)
T ss_pred hhcccccCCeEEEEecccccCC-CHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 4332 23445555566554 444578899999999999999998654443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.9e-08 Score=104.33 Aligned_cols=120 Identities=18% Similarity=0.197 Sum_probs=84.1
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.++..++.. +.+|+++ |+++.+++.|+++ + .+.++.+|+.. ++++++||+|+++...
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~av--Dis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIAT--DISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEE--ECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 46899999999999998875 6788988 6677777777654 3 26778887533 2345689999995322
Q ss_pred hh-------------cCC--------c--hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEE
Q 043503 349 SN-------------WIP--------D--SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 349 ~~-------------~~~--------d--~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
.. +.| + +....++.++.+.|+|||.+++.. +....+.+.+++.+.||+.+..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi----g~~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI----GFKQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE----CCchHHHHHHHHHhcCCCceEE
Confidence 11 001 1 123457888999999999998852 2334567788888999976543
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.5e-08 Score=94.02 Aligned_cols=124 Identities=23% Similarity=0.274 Sum_probs=88.4
Q ss_pred EEEEEcCCccHHHHHHHHc--CCEEEEEecCCCh-hH-HHHHHhcCC---eeEEEcccccC--CC------CCCceeEEE
Q 043503 279 IGLDIGGGTGTFAARMRER--NVTIITTSLNLDG-PF-NSFIASRGL---ISMHISVSQRL--PF------FENTLDIVH 343 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~-~~-le~a~~rg~---i~~~~~d~~~l--pf------~d~sfDlV~ 343 (430)
.||+||+|||..+.++++. ..+....|+|... .. .+.+.+.+. ..-+..|...- +. ..++||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 5799999999999999998 6677777555433 12 233444443 22233343322 22 356899999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC-----------------------cHHHHHHHHHHcCCE
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-----------------------LNETYVPMLDRIGFK 400 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-----------------------~~~~~~~ll~~~Gfk 400 (430)
|.+++ |.++....+.++..+.++|+|||.|++...|..+.. ..+++.++..+.|++
T Consensus 108 ~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~ 186 (204)
T PF06080_consen 108 CINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLE 186 (204)
T ss_pred ehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCc
Confidence 99999 778877789999999999999999999888764432 234577788888888
Q ss_pred EEE
Q 043503 401 KLR 403 (430)
Q Consensus 401 ~l~ 403 (430)
..+
T Consensus 187 l~~ 189 (204)
T PF06080_consen 187 LEE 189 (204)
T ss_pred cCc
Confidence 655
|
The function of this family is unknown. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.9e-08 Score=91.67 Aligned_cols=90 Identities=18% Similarity=0.120 Sum_probs=66.6
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+|||+|||+|.++..+++...+|+++ |.++.+.+.++++ +. +.+..+|........++||+|++.....+
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~~v~~v--d~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~- 156 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVRRVFSV--ERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPE- 156 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhCEEEEE--eCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchh-
Confidence 456999999999999888876688888 6668887777654 33 78888886442223478999999655422
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+...+.+.|+|||.+++..
T Consensus 157 --------~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 157 --------IPRALLEQLKEGGILVAPV 175 (212)
T ss_pred --------hhHHHHHhcCCCcEEEEEE
Confidence 2346788999999998864
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.1e-08 Score=95.39 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=89.1
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-CCeeEEEcccccCCCCCCceeEEEEccchhhcCCc
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d 354 (430)
.+|||+|||+|.++..++.+ +.+|+++ |+++.|++.++++ ..+.++.+|+..+. .+++||+|+++..+.+....
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gV--Disp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCV--ELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTT 142 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCch
Confidence 35699999999999988776 5788988 6678888888775 34788899987765 35689999998777542211
Q ss_pred h---------------h--HHHHHHHHHHhccCCcEEEEee---ccccCcCcHHHHHHHHHHcCCEEE
Q 043503 355 S---------------M--LEFTLYDIYRLLRPGGIFWLDR---FFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 355 ~---------------~--l~~~L~ei~RvLrPGG~lvl~~---f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
+ . ...++....++|+|+|.+++.. .+-+.+-..++|.++++..||...
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEec
Confidence 0 0 3567888899999999876641 111222245789999999999743
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-07 Score=99.15 Aligned_cols=141 Identities=14% Similarity=0.190 Sum_probs=91.3
Q ss_pred CCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccc
Q 043503 258 NGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQ 330 (430)
Q Consensus 258 ~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~ 330 (430)
+......+...+...++ .+|||+|||+|..+..++++ +.+|+++ |.++.+++.++++ |. +.++.+|+.
T Consensus 229 Qd~~s~~~~~~l~~~~g---~~VLDlgaG~G~~t~~la~~~~~~~v~a~--D~s~~~l~~~~~n~~~~g~~~~~~~~D~~ 303 (427)
T PRK10901 229 QDAAAQLAATLLAPQNG---ERVLDACAAPGGKTAHILELAPQAQVVAL--DIDAQRLERVRENLQRLGLKATVIVGDAR 303 (427)
T ss_pred ECHHHHHHHHHcCCCCC---CEEEEeCCCCChHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHHHHHcCCCeEEEEcCcc
Confidence 33333334445544444 34699999999999999987 3588888 6677777666544 43 678888887
Q ss_pred cCC--CCCCceeEEEEccc------hh-----hcCCc--------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHH
Q 043503 331 RLP--FFENTLDIVHSMHV------LS-----NWIPD--------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNET 389 (430)
Q Consensus 331 ~lp--f~d~sfDlV~~~~~------L~-----~~~~d--------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~ 389 (430)
.++ +.+++||.|++... +. .|... .....++..+.++|||||.+++++......+-...
T Consensus 304 ~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~ 383 (427)
T PRK10901 304 DPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQ 383 (427)
T ss_pred cchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHH
Confidence 654 34678999995321 10 01111 11347899999999999999988743333333355
Q ss_pred HHHHHHHc-CCEEEE
Q 043503 390 YVPMLDRI-GFKKLR 403 (430)
Q Consensus 390 ~~~ll~~~-Gfk~l~ 403 (430)
+...+++. +|+.+.
T Consensus 384 v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 384 IKAFLARHPDAELLD 398 (427)
T ss_pred HHHHHHhCCCCEEec
Confidence 66666664 576554
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.4e-08 Score=101.29 Aligned_cols=135 Identities=15% Similarity=0.132 Sum_probs=93.6
Q ss_pred hHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEccccc----
Q 043503 262 DYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQR---- 331 (430)
Q Consensus 262 ~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~---- 331 (430)
...++.++..+......+|||+|||+|.++..+++.+.+|+++ |.++.|++.|+++ +. +.++.+|+..
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gv--D~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~ 360 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGV--EGVEAMVERARENARRNGLDNVTFYHANLEEDFTD 360 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEE--eCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh
Confidence 3344555554433333467999999999999999988889988 7778888777654 33 7889998754
Q ss_pred CCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE-eccc
Q 043503 332 LPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN-VGMK 409 (430)
Q Consensus 332 lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~-~~~k 409 (430)
+++.+++||+|++...-. .....+..+.+ ++|++.+|++ |....+.+++.. +.+.||++.+.. +++.
T Consensus 361 ~~~~~~~fD~Vi~dPPr~------g~~~~~~~l~~-~~~~~ivyvS---Cnp~tlaRDl~~-L~~~gY~l~~i~~~DmF 428 (443)
T PRK13168 361 QPWALGGFDKVLLDPPRA------GAAEVMQALAK-LGPKRIVYVS---CNPATLARDAGV-LVEAGYRLKRAGMLDMF 428 (443)
T ss_pred hhhhcCCCCEEEECcCCc------ChHHHHHHHHh-cCCCeEEEEE---eChHHhhccHHH-HhhCCcEEEEEEEeccC
Confidence 234567899999953331 13345555555 6999999996 666666666664 456799988876 4444
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-07 Score=91.94 Aligned_cols=139 Identities=20% Similarity=0.314 Sum_probs=88.8
Q ss_pred eecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHh----cCCee--EEE
Q 043503 255 LIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIAS----RGLIS--MHI 326 (430)
Q Consensus 255 ~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~----rg~i~--~~~ 326 (430)
..+.......++.++........ +|||+|||+|.+++.++.+. .+|+++ |+++..++.|++ +|... ++.
T Consensus 90 liPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~--Dis~~Al~~A~~Na~~~~l~~~~~~~ 166 (280)
T COG2890 90 LIPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAV--DISPDALALARENAERNGLVRVLVVQ 166 (280)
T ss_pred eecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEE--ECCHHHHHHHHHHHHHcCCccEEEEe
Confidence 34555555556665422222221 57999999999999999984 499999 555666655544 35432 333
Q ss_pred ccc-ccCCCCCCceeEEEEccchhhcC-----C---------------c--hhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 327 SVS-QRLPFFENTLDIVHSMHVLSNWI-----P---------------D--SMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 327 ~d~-~~lpf~d~sfDlV~~~~~L~~~~-----~---------------d--~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
+|. ..+ .++||+|+|+.....-. + + +....++.++.+.|+|||.+++.. +
T Consensus 167 ~dlf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~----g 239 (280)
T COG2890 167 SDLFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI----G 239 (280)
T ss_pred eeccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE----C
Confidence 332 323 24899999964331110 0 1 145678889999999999998853 2
Q ss_pred cCcHHHHHHHHHHcC-CEEEE
Q 043503 384 SQLNETYVPMLDRIG-FKKLR 403 (430)
Q Consensus 384 ~~~~~~~~~ll~~~G-fk~l~ 403 (430)
....+.+.+++.+.| |..+.
T Consensus 240 ~~q~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 240 LTQGEAVKALFEDTGFFEIVE 260 (280)
T ss_pred CCcHHHHHHHHHhcCCceEEE
Confidence 234577889999999 55443
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-08 Score=95.91 Aligned_cols=136 Identities=23% Similarity=0.302 Sum_probs=101.4
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc---CC-eeEEEcccccCCCCCCce
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR---GL-ISMHISVSQRLPFFENTL 339 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r---g~-i~~~~~d~~~lpf~d~sf 339 (430)
.|++...++ ....++|||||.|.+...+...++ +++-+ |.|..|++.++.- ++ ....++|-+.++|.++++
T Consensus 63 aDrvfD~kk--~fp~a~diGcs~G~v~rhl~~e~vekli~~--DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~ 138 (325)
T KOG2940|consen 63 ADRVFDCKK--SFPTAFDIGCSLGAVKRHLRGEGVEKLIMM--DTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSV 138 (325)
T ss_pred HHHHHHHhh--hCcceeecccchhhhhHHHHhcchhheeee--ecchHHHHHhhccCCCceEEEEEecchhcccccccch
Confidence 344444333 234579999999999999998876 44444 7888998887654 33 566788999999999999
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecccc-----------------------CcC--cHHHHHHHH
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF-----------------------GSQ--LNETYVPML 394 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~-----------------------~~~--~~~~~~~ll 394 (430)
|+|+++..+ ||+.+ +..-+.++...|||+|.|+-+-|... -+. ..+++-.++
T Consensus 139 DLiisSlsl-HW~Nd--LPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL 215 (325)
T KOG2940|consen 139 DLIISSLSL-HWTND--LPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLL 215 (325)
T ss_pred hhhhhhhhh-hhhcc--CchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHH
Confidence 999999988 89988 88899999999999999975432210 000 124577789
Q ss_pred HHcCCEEEEEEec
Q 043503 395 DRIGFKKLRWNVG 407 (430)
Q Consensus 395 ~~~Gfk~l~~~~~ 407 (430)
.++||..+...+.
T Consensus 216 ~rAGF~m~tvDtD 228 (325)
T KOG2940|consen 216 TRAGFSMLTVDTD 228 (325)
T ss_pred hhcCcccceeccc
Confidence 9999987765544
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-07 Score=98.41 Aligned_cols=132 Identities=19% Similarity=0.204 Sum_probs=90.4
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCC--
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLP-- 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lp-- 333 (430)
+..++...++ .+|||+|||+|..+..+++. ..+|+++ |.++.+++.++++ |. +.++.+|+..++
T Consensus 244 ~~~~l~~~~g---~~VLDl~ag~G~kt~~la~~~~~~g~v~a~--D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 244 VAPLLDPQPG---EVILDACAAPGGKTTHIAELMGDQGEIWAV--DRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL 318 (434)
T ss_pred HHHHhCCCCc---CEEEEeCCCCchhHHHHHHHhCCCceEEEE--cCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc
Confidence 4444444443 34699999999999999886 3578888 6678777666544 43 788888887765
Q ss_pred --CCCCceeEEEEc------cchhhcCCc-------h-------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHH
Q 043503 334 --FFENTLDIVHSM------HVLSNWIPD-------S-------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYV 391 (430)
Q Consensus 334 --f~d~sfDlV~~~------~~L~~~~~d-------~-------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~ 391 (430)
+.+++||.|++. .++.+ .++ + ....+|.++.++|||||+++.++-....++-...+.
T Consensus 319 ~~~~~~~fD~Vl~DaPCSg~G~~~r-~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~ 397 (434)
T PRK14901 319 KPQWRGYFDRILLDAPCSGLGTLHR-HPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIE 397 (434)
T ss_pred cccccccCCEEEEeCCCCccccccc-CcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHH
Confidence 446789999972 12211 121 0 135789999999999999998875544444445677
Q ss_pred HHHHHc-CCEEE
Q 043503 392 PMLDRI-GFKKL 402 (430)
Q Consensus 392 ~ll~~~-Gfk~l 402 (430)
..+++. +|+..
T Consensus 398 ~~l~~~~~~~~~ 409 (434)
T PRK14901 398 QFLARHPDWKLE 409 (434)
T ss_pred HHHHhCCCcEec
Confidence 777765 57644
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.2e-08 Score=88.07 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=69.4
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCCCceeEEEEccchhhcCC
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~ 353 (430)
.++||+|||+|.++..+++++.+++++ |.++.+.+.++++ +.+.++.+|+..+++++..||.|+++..+ + +.
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~~~v~~v--E~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py-~-~~ 90 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERAARVTAI--EIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPY-N-IS 90 (169)
T ss_pred CEEEEECCCccHHHHHHHhcCCeEEEE--ECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCc-c-cH
Confidence 457999999999999999998899998 5557777777665 34789999999988877789999996544 3 22
Q ss_pred chhHHHHHHHHHHhccCCcEEEEee
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+..++.+. .+.++|.+++-.
T Consensus 91 ~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 91 TPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred HHHHHHHHhcC--CCcceEEEEEEH
Confidence 22233333321 245788887754
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.4e-07 Score=84.25 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=84.9
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC--eeEEEccccc-CCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQR-LPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~-lpf~d~sfDlV~~~~~L 348 (430)
.+++|||||||+.+..++.. ..+|+++ |-++.+++..+++ |. +.++.+++-. ++-.+ ++|.|+....
T Consensus 36 ~~l~DIGaGtGsi~iE~a~~~p~~~v~AI--e~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg- 111 (187)
T COG2242 36 DRLWDIGAGTGSITIEWALAGPSGRVIAI--ERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGG- 111 (187)
T ss_pred CEEEEeCCCccHHHHHHHHhCCCceEEEE--ecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECCC-
Confidence 45699999999999999944 6788888 6556666555444 43 6777887643 33222 7999999654
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCC-EEEEEEeccc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGF-KKLRWNVGMK 409 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gf-k~l~~~~~~k 409 (430)
.+ ++.+|..+...|||||.++..-.. -+......+.+++.|+ .+++......
T Consensus 112 ~~------i~~ile~~~~~l~~ggrlV~nait---lE~~~~a~~~~~~~g~~ei~~v~is~~ 164 (187)
T COG2242 112 GN------IEEILEAAWERLKPGGRLVANAIT---LETLAKALEALEQLGGREIVQVQISRG 164 (187)
T ss_pred CC------HHHHHHHHHHHcCcCCeEEEEeec---HHHHHHHHHHHHHcCCceEEEEEeecc
Confidence 22 778999999999999999986322 2223456778899999 7766654443
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-07 Score=98.53 Aligned_cols=132 Identities=20% Similarity=0.149 Sum_probs=86.6
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFF 335 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~ 335 (430)
...++...++ .+|||+|||+|..+..+++. +.+|+++ |+++.+++.++++ |. +.++.+|+..++ +
T Consensus 242 ~~~~l~~~~g---~~VLDlgaG~G~kt~~la~~~~~~~~V~av--D~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~ 315 (445)
T PRK14904 242 ACLLLNPQPG---STVLDLCAAPGGKSTFMAELMQNRGQITAV--DRYPQKLEKIRSHASALGITIIETIEGDARSFS-P 315 (445)
T ss_pred HHHhcCCCCC---CEEEEECCCCCHHHHHHHHHhCCCcEEEEE--ECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-c
Confidence 3344444443 34699999999999888875 4588888 7778887766544 43 788888887765 5
Q ss_pred CCceeEEEEc------cchhh-----cCC-ch-------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHH
Q 043503 336 ENTLDIVHSM------HVLSN-----WIP-DS-------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDR 396 (430)
Q Consensus 336 d~sfDlV~~~------~~L~~-----~~~-d~-------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~ 396 (430)
+++||+|++- ..+.. |.. .+ ....+|.++.++|||||++++++.....++-...+...+++
T Consensus 316 ~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 316 EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 6789999962 11110 110 01 13468999999999999999987443332223445566666
Q ss_pred c-CCEEE
Q 043503 397 I-GFKKL 402 (430)
Q Consensus 397 ~-Gfk~l 402 (430)
. +|+..
T Consensus 396 ~~~~~~~ 402 (445)
T PRK14904 396 HPEFSAE 402 (445)
T ss_pred CCCCEEe
Confidence 5 56654
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.1e-07 Score=91.42 Aligned_cols=138 Identities=11% Similarity=0.148 Sum_probs=87.0
Q ss_pred CCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcc
Q 043503 258 NGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL--ISMHISV 328 (430)
Q Consensus 258 ~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d 328 (430)
+..........+...++. +|||+|||+|..+..+++. ...|+++ |.++.+++.++++ |. +.++..|
T Consensus 56 qd~~s~~~~~~l~~~~g~---~VLDl~ag~G~kt~~la~~~~~~g~v~a~--D~~~~~l~~~~~n~~~~g~~~v~~~~~D 130 (264)
T TIGR00446 56 QEASSMIPPLALEPDPPE---RVLDMAAAPGGKTTQISALMKNEGAIVAN--EFSKSRTKVLIANINRCGVLNVAVTNFD 130 (264)
T ss_pred ECHHHHHHHHHhCCCCcC---EEEEECCCchHHHHHHHHHcCCCCEEEEE--cCCHHHHHHHHHHHHHcCCCcEEEecCC
Confidence 333333344455444443 4699999999999998876 3578888 7778777666543 43 6778888
Q ss_pred cccCCCCCCceeEEEEcc------chhh-------cCCc------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHH
Q 043503 329 SQRLPFFENTLDIVHSMH------VLSN-------WIPD------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNET 389 (430)
Q Consensus 329 ~~~lpf~d~sfDlV~~~~------~L~~-------~~~d------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~ 389 (430)
+..++...+.||.|++.- ++.+ |.++ .....+|..+.+.|||||+++.++-....++-...
T Consensus 131 ~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~v 210 (264)
T TIGR00446 131 GRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAV 210 (264)
T ss_pred HHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHH
Confidence 877665566799999721 1110 1111 02346999999999999999987633222222334
Q ss_pred HHHHHHHc-CCE
Q 043503 390 YVPMLDRI-GFK 400 (430)
Q Consensus 390 ~~~ll~~~-Gfk 400 (430)
+..++++. +|.
T Consensus 211 v~~~l~~~~~~~ 222 (264)
T TIGR00446 211 VDYLLEKRPDVV 222 (264)
T ss_pred HHHHHHhCCCcE
Confidence 55555553 444
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.6e-07 Score=92.94 Aligned_cols=118 Identities=15% Similarity=0.186 Sum_probs=84.6
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCC-CCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPF-FENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf-~d~sfDlV~~~~~L~~ 350 (430)
.+|||+|||+|.++..+++++.+|+++ |.++.+++.|+++ |. +.++.+|+..+.. .+++||+|++...-.
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~~V~gv--D~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~- 251 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGMQLTGI--EISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR- 251 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEEEE--eCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC-
Confidence 457999999999999999999999998 6678887766544 43 7899999876542 345799999963321
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE-eccc
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN-VGMK 409 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~-~~~k 409 (430)
.+...+.++...++|++.++++ |....+.++...+ .||++.+.. +.+.
T Consensus 252 -----G~~~~~~~~l~~~~~~~ivyvs---c~p~t~~rd~~~l---~~y~~~~~~~~DmF 300 (315)
T PRK03522 252 -----GIGKELCDYLSQMAPRFILYSS---CNAQTMAKDLAHL---PGYRIERVQLFDMF 300 (315)
T ss_pred -----CccHHHHHHHHHcCCCeEEEEE---CCcccchhHHhhc---cCcEEEEEEEeccC
Confidence 1222333444557889888886 7777677777665 589988766 4443
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.2e-07 Score=94.43 Aligned_cols=133 Identities=16% Similarity=0.146 Sum_probs=85.4
Q ss_pred hHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC-eeE--EEcccccC
Q 043503 262 DYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL-ISM--HISVSQRL 332 (430)
Q Consensus 262 ~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~-i~~--~~~d~~~l 332 (430)
...+...+...++ .+|||+|||+|..+..+++. +.+|+++ |+++.+++.++++ |. +.+ ..+|....
T Consensus 227 s~~~~~~L~~~~g---~~VLDlcag~G~kt~~la~~~~~~~v~a~--D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~ 301 (426)
T TIGR00563 227 AQWVATWLAPQNE---ETILDACAAPGGKTTHILELAPQAQVVAL--DIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP 301 (426)
T ss_pred HHHHHHHhCCCCC---CeEEEeCCCccHHHHHHHHHcCCCeEEEE--eCCHHHHHHHHHHHHHcCCCeEEEEeccccccc
Confidence 3344555554444 45699999999999999886 3688888 6677777666544 44 233 44555444
Q ss_pred CC--CCCceeEEEEc------cchhhcCCch--------------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHH
Q 043503 333 PF--FENTLDIVHSM------HVLSNWIPDS--------------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETY 390 (430)
Q Consensus 333 pf--~d~sfDlV~~~------~~L~~~~~d~--------------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~ 390 (430)
++ ++++||.|++. .++++ .++- ....+|.++.++|||||.+++++......+-...+
T Consensus 302 ~~~~~~~~fD~VllDaPcSg~G~~~~-~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v 380 (426)
T TIGR00563 302 SQWAENEQFDRILLDAPCSATGVIRR-HPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQI 380 (426)
T ss_pred cccccccccCEEEEcCCCCCCccccc-CcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHH
Confidence 43 46789999962 22322 2220 13579999999999999999987443333333455
Q ss_pred HHHHHHc-CCE
Q 043503 391 VPMLDRI-GFK 400 (430)
Q Consensus 391 ~~ll~~~-Gfk 400 (430)
...+++. +|.
T Consensus 381 ~~~l~~~~~~~ 391 (426)
T TIGR00563 381 KAFLQEHPDFP 391 (426)
T ss_pred HHHHHhCCCCe
Confidence 5666665 454
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.1e-07 Score=95.71 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=87.6
Q ss_pred hHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccC
Q 043503 262 DYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRL 332 (430)
Q Consensus 262 ~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~l 332 (430)
...+...+...++ .+|||+|||+|..+..+++. +.+|+++ |+++.+++.++++ |. +.++.+|+..+
T Consensus 239 s~lv~~~l~~~~g---~~VLDlgaG~G~~t~~la~~~~~~~~v~av--Di~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~ 313 (444)
T PRK14902 239 SMLVAPALDPKGG---DTVLDACAAPGGKTTHIAELLKNTGKVVAL--DIHEHKLKLIEENAKRLGLTNIETKALDARKV 313 (444)
T ss_pred HHHHHHHhCCCCC---CEEEEeCCCCCHHHHHHHHHhCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCeEEEEeCCcccc
Confidence 3334444444443 45699999999999999886 4688888 6667777666543 43 78888888765
Q ss_pred C-CCCCceeEEEEccc------hhh-----cCC-ch-------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHH
Q 043503 333 P-FFENTLDIVHSMHV------LSN-----WIP-DS-------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVP 392 (430)
Q Consensus 333 p-f~d~sfDlV~~~~~------L~~-----~~~-d~-------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ 392 (430)
+ ...++||+|++... +.+ |.. .. ....+|..+.++|||||.++.++-....++-...+..
T Consensus 314 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~ 393 (444)
T PRK14902 314 HEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEA 393 (444)
T ss_pred cchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHH
Confidence 3 11278999997421 110 000 00 1246899999999999999976532222222345556
Q ss_pred HHHHc-CCEEEEE
Q 043503 393 MLDRI-GFKKLRW 404 (430)
Q Consensus 393 ll~~~-Gfk~l~~ 404 (430)
.+++. +|+.+..
T Consensus 394 ~l~~~~~~~~~~~ 406 (444)
T PRK14902 394 FLEEHPEFELVPL 406 (444)
T ss_pred HHHhCCCcEEecc
Confidence 66665 4776654
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.2e-08 Score=94.90 Aligned_cols=98 Identities=18% Similarity=0.244 Sum_probs=74.1
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc-----CC-------eeEEEcccc------cCCCCCCc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR-----GL-------ISMHISVSQ------RLPFFENT 338 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r-----g~-------i~~~~~d~~------~lpf~d~s 338 (430)
+.++|+|||.|.-++..-..|. .++++ |+++..++.|+.| +. +.|+.+|.. .+++.+.+
T Consensus 119 ~~~~~LgCGKGGDLlKw~kAgI~~~igi--DIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 119 DDVLDLGCGKGGDLLKWDKAGIGEYIGI--DIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccceeccCCcccHhHhhhhcccceEee--ehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 3459999999998888877754 56777 6677777777665 11 567788753 34456667
Q ss_pred eeEEEEccchhh-cCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 339 LDIVHSMHVLSN-WIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 339 fDlV~~~~~L~~-~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
||+|-|.+++|. |...+..+.+|.++.+.|||||+|+-+
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 999999999943 235567888999999999999999765
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.4e-07 Score=95.22 Aligned_cols=137 Identities=15% Similarity=0.207 Sum_probs=90.9
Q ss_pred hHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccC
Q 043503 262 DYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRL 332 (430)
Q Consensus 262 ~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~l 332 (430)
...+..++...++. +|||+|||+|..+..+++. +.+|+++ |+++.+++.++++ |. +.+..+|+..+
T Consensus 226 s~~~~~~l~~~~g~---~VLD~cagpGgkt~~la~~~~~~g~V~a~--Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l 300 (431)
T PRK14903 226 SQIVPLLMELEPGL---RVLDTCAAPGGKTTAIAELMKDQGKILAV--DISREKIQLVEKHAKRLKLSSIEIKIADAERL 300 (431)
T ss_pred HHHHHHHhCCCCCC---EEEEeCCCccHHHHHHHHHcCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCeEEEEECchhhh
Confidence 33344555544443 4699999999999988876 5688888 6678887766544 44 67888888877
Q ss_pred C-CCCCceeEEEEcc-c--hhhc--CCc--------------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHH
Q 043503 333 P-FFENTLDIVHSMH-V--LSNW--IPD--------------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVP 392 (430)
Q Consensus 333 p-f~d~sfDlV~~~~-~--L~~~--~~d--------------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ 392 (430)
+ +.+++||.|++.- | +..+ .++ .....+|.++.+.|||||.+++++-....++-.+.+..
T Consensus 301 ~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~ 380 (431)
T PRK14903 301 TEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKR 380 (431)
T ss_pred hhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHH
Confidence 6 4567899999721 1 1110 111 02356799999999999999988744333334455666
Q ss_pred HHHH-cCCEEEE
Q 043503 393 MLDR-IGFKKLR 403 (430)
Q Consensus 393 ll~~-~Gfk~l~ 403 (430)
.+++ -+|..+.
T Consensus 381 fl~~~~~~~~~~ 392 (431)
T PRK14903 381 FVYEQKDAEVID 392 (431)
T ss_pred HHHhCCCcEEec
Confidence 6654 4576544
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.9e-07 Score=90.37 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=72.2
Q ss_pred ccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-------CCeeEEEcccccC-CCCCCceeEEEEcc
Q 043503 277 IRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-------GLISMHISVSQRL-PFFENTLDIVHSMH 346 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~~~l-pf~d~sfDlV~~~~ 346 (430)
.++|||||||+|.++..+++. +.+++++ |+++.+++.|++. ..+.++++|+..+ .-..++||+|++..
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~V--Eidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAV--EINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEE--ECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 456799999999999999877 5788888 6668888888764 2378888886542 22246899999842
Q ss_pred chhhcCCc-hhHHHHHHHHHHhccCCcEEEEee
Q 043503 347 VLSNWIPD-SMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 347 ~L~~~~~d-~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.-....+. -....++.++.++|+|||.+++..
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 11111111 123689999999999999999864
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.5e-07 Score=92.37 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=66.1
Q ss_pred cEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.+++.+++. + ..|+++ |.++.+++.|+++ |. +.++.+|+...+...++||+|++....
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgV--Dis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~ 159 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSV--EYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGV 159 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCch
Confidence 45699999999999999986 3 358877 6678888776653 43 677888876655555789999996544
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.+ ....+.+.|+|||.+++.
T Consensus 160 ~~---------ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 160 DE---------VPETWFTQLKEGGRVIVP 179 (322)
T ss_pred HH---------hHHHHHHhcCCCCEEEEE
Confidence 32 233567899999998874
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.59 E-value=3e-07 Score=86.58 Aligned_cols=117 Identities=18% Similarity=0.213 Sum_probs=70.8
Q ss_pred CCchhHHHHHHHc-cC----CCCCccEEEEEcCCcc----HHHHHHHHc-------CCEEEEEecCCChhHHHHHHhc--
Q 043503 258 NGKLDYGIDQVLS-MK----PLGTIRIGLDIGGGTG----TFAARMRER-------NVTIITTSLNLDGPFNSFIASR-- 319 (430)
Q Consensus 258 ~~~~~~~id~lL~-~~----p~~~ir~VLDIGcGtG----~~a~~La~~-------g~~Vv~vdiD~s~~~le~a~~r-- 319 (430)
....+...+.++. .+ +...+ +|+..||++| ++|..+.+. .++|+++ |++..+++.|++-
T Consensus 9 ~~~f~~l~~~vlp~~~~~~~~~~~l-rIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~at--Di~~~~L~~Ar~G~Y 85 (196)
T PF01739_consen 9 PEQFEALRDEVLPPLLARARPGRPL-RIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILAT--DISPSALEKARAGIY 85 (196)
T ss_dssp TTHHHHHHHHHH-------CS-S-E-EEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEE--ES-HHHHHHHHHTEE
T ss_pred HHHHHHHHHHHHHhhccccCCCCCe-EEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEE--ECCHHHHHHHHhCCC
Confidence 3344555555552 22 22334 5599999999 566666662 2688888 5557777776421
Q ss_pred --------------------------------CCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHh
Q 043503 320 --------------------------------GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRL 367 (430)
Q Consensus 320 --------------------------------g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~Rv 367 (430)
..+.|...+.-..+.+.+.||+|+|.+++..+ +.+....++..+++.
T Consensus 86 ~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~~~ 164 (196)
T PF01739_consen 86 PERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLHRS 164 (196)
T ss_dssp EGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHGGG
T ss_pred CHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHHHHHHHH
Confidence 22777777765533456789999999999764 555688999999999
Q ss_pred ccCCcEEEEee
Q 043503 368 LRPGGIFWLDR 378 (430)
Q Consensus 368 LrPGG~lvl~~ 378 (430)
|+|||+|++.+
T Consensus 165 L~pgG~L~lG~ 175 (196)
T PF01739_consen 165 LKPGGYLFLGH 175 (196)
T ss_dssp EEEEEEEEE-T
T ss_pred cCCCCEEEEec
Confidence 99999999953
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-07 Score=95.25 Aligned_cols=120 Identities=14% Similarity=0.076 Sum_probs=77.7
Q ss_pred cCCchhHHHHHHHccCC-CCCccEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHhcC--------------
Q 043503 257 DNGKLDYGIDQVLSMKP-LGTIRIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIASRG-------------- 320 (430)
Q Consensus 257 ~~~~~~~~id~lL~~~p-~~~ir~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~rg-------------- 320 (430)
.+......|........ ......|||+|||-|.-.......+ ..++|+ |++...++.|++|-
T Consensus 42 NNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~--Dis~~si~ea~~Ry~~~~~~~~~~~~~~ 119 (331)
T PF03291_consen 42 NNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGI--DISEESIEEARERYKQLKKRNNSKQYRF 119 (331)
T ss_dssp HHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEE--ES-HHHHHHHHHHHHHHHTSTT-HTSEE
T ss_pred hHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEE--eCCHHHHHHHHHHHHHhccccccccccc
Confidence 34444455555554322 1234568999999998777776664 477788 66777777776652
Q ss_pred -C-eeEEEcccccCC----CCC--CceeEEEEccchhhcC-CchhHHHHHHHHHHhccCCcEEEEee
Q 043503 321 -L-ISMHISVSQRLP----FFE--NTLDIVHSMHVLSNWI-PDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 321 -~-i~~~~~d~~~lp----f~d--~sfDlV~~~~~L~~~~-~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
. ..++.+|...-. +++ ..||+|-|++++|... .++..+.+|..+...|+|||+|+.+.
T Consensus 120 ~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 120 DFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp CCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1 455677654221 333 5999999999996543 45567779999999999999998753
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.8e-07 Score=85.02 Aligned_cols=98 Identities=19% Similarity=0.243 Sum_probs=71.8
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCce
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTL 339 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sf 339 (430)
-+.+...++. .|||||||+|..++.|++...+|+++ +..+...+.|+++ |. +.+.++|...---+...|
T Consensus 65 ~~~L~~~~g~---~VLEIGtGsGY~aAvla~l~~~V~si--Er~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPy 139 (209)
T COG2518 65 LQLLELKPGD---RVLEIGTGSGYQAAVLARLVGRVVSI--ERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPY 139 (209)
T ss_pred HHHhCCCCCC---eEEEECCCchHHHHHHHHHhCeEEEE--EEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCc
Confidence 3444555554 45999999999999999996689988 5557777777665 44 888888865432245789
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
|.|+....... +|+ .+.+-|+|||.+++-
T Consensus 140 D~I~Vtaaa~~-vP~--------~Ll~QL~~gGrlv~P 168 (209)
T COG2518 140 DRIIVTAAAPE-VPE--------ALLDQLKPGGRLVIP 168 (209)
T ss_pred CEEEEeeccCC-CCH--------HHHHhcccCCEEEEE
Confidence 99999766633 554 455679999999874
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.1e-07 Score=87.66 Aligned_cols=125 Identities=20% Similarity=0.224 Sum_probs=89.5
Q ss_pred CccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----CC----eeEEEcccccCC--CCCCceeEEEE
Q 043503 276 TIRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----GL----ISMHISVSQRLP--FFENTLDIVHS 344 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g~----i~~~~~d~~~lp--f~d~sfDlV~~ 344 (430)
.-.+|||...|-|.+|+..+++|+ .|+++.. ++..++.|.-+ ++ +.++.+|+..+- |+|.+||+|+-
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEk--dp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEK--DPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEee--CCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 345679999999999999999998 8988844 46667776644 22 688888875542 78999999886
Q ss_pred ccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC------cCcHHHHHHHHHHcCCEEEEE
Q 043503 345 MHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG------SQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 345 ~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~------~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
-..-.....+---+.+.+|++|+|||||.++- +.... .+....+.+.++++||.+++.
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFH--YvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFH--YVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEE--EeCCCCcccccCChhHHHHHHHHhcCceeeee
Confidence 32211111122346789999999999999753 33322 235677889999999997763
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.1e-07 Score=90.29 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=71.7
Q ss_pred CccEEEEEcCCccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhc-----------CCeeEEEcccccC-CCCCCceeE
Q 043503 276 TIRIGLDIGGGTGTFAARMRER-N-VTIITTSLNLDGPFNSFIASR-----------GLISMHISVSQRL-PFFENTLDI 341 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~r-----------g~i~~~~~d~~~l-pf~d~sfDl 341 (430)
..++||+||||+|..+..++++ + .+|+++ |+++.+++.+++. ..+.++.+|+..+ ...+++||+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~V--Eid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLV--EIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEE--eCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 3467799999999999999887 4 478888 5567888777653 2367888887553 334678999
Q ss_pred EEEccchhhcCCch--hHHHHHHHHHHhccCCcEEEEe
Q 043503 342 VHSMHVLSNWIPDS--MLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 342 V~~~~~L~~~~~d~--~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
|++... ..+.+.. ....++..+.+.|+|||.+++.
T Consensus 154 Ii~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999432 2322221 1367889999999999999874
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-07 Score=87.21 Aligned_cols=89 Identities=19% Similarity=0.248 Sum_probs=61.9
Q ss_pred cEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||||||+|.+++.++.. + ..|+++ |..+...+.|+++ +. +.++++|....--....||.|++....
T Consensus 74 ~~VLeIGtGsGY~aAlla~lvg~~g~Vv~v--E~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~ 151 (209)
T PF01135_consen 74 DRVLEIGTGSGYQAALLAHLVGPVGRVVSV--ERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAV 151 (209)
T ss_dssp -EEEEES-TTSHHHHHHHHHHSTTEEEEEE--ESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESSBB
T ss_pred CEEEEecCCCcHHHHHHHHhcCccceEEEE--CccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEeecc
Confidence 45699999999999999987 4 357777 5557777777655 44 788998865433345689999997666
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.. +| ..+.+.|++||++++-
T Consensus 152 ~~-ip--------~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 152 PE-IP--------EALLEQLKPGGRLVAP 171 (209)
T ss_dssp SS-----------HHHHHTEEEEEEEEEE
T ss_pred ch-HH--------HHHHHhcCCCcEEEEE
Confidence 32 32 2567789999999873
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.7e-07 Score=84.59 Aligned_cols=119 Identities=20% Similarity=0.327 Sum_probs=78.9
Q ss_pred EEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHH----HhcCC--eeEEEccccc-CC--CCCCceeEEEEccc
Q 043503 279 IGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFI----ASRGL--ISMHISVSQR-LP--FFENTLDIVHSMHV 347 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a----~~rg~--i~~~~~d~~~-lp--f~d~sfDlV~~~~~ 347 (430)
++||||||.|.+...+|.+ +..++|+ |+....+..+ .++++ +.++.+|+.. +. ++++++|-|+..+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGi--E~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGI--EIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEE--ES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEE--ecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 6899999999999999988 6788888 5555544433 33344 8888888766 33 56799999999554
Q ss_pred hhhcCCch------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHH--cCCEEEE
Q 043503 348 LSNWIPDS------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDR--IGFKKLR 403 (430)
Q Consensus 348 L~~~~~d~------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~--~Gfk~l~ 403 (430)
= .|.... ....++..+.++|+|||.+.+.+ ......+...+.+.. .+|+...
T Consensus 98 D-PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T---D~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 98 D-PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT---DVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE---S-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred C-CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe---CCHHHHHHHHHHHHhcCcCeEEcc
Confidence 3 343211 23569999999999999998752 223344555666666 3777663
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.5e-07 Score=88.20 Aligned_cols=99 Identities=13% Similarity=0.206 Sum_probs=71.4
Q ss_pred CccEEEEEcCCcc----HHHHHHHHc------CCEEEEEecCCChhHHHHHHhc--------------------------
Q 043503 276 TIRIGLDIGGGTG----TFAARMRER------NVTIITTSLNLDGPFNSFIASR-------------------------- 319 (430)
Q Consensus 276 ~ir~VLDIGcGtG----~~a~~La~~------g~~Vv~vdiD~s~~~le~a~~r-------------------------- 319 (430)
.+ +|+..||+|| ++|..+.+. .++|+++ |++..+++.|++-
T Consensus 116 ~i-rIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~at--DIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~ 192 (287)
T PRK10611 116 EY-RVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFAS--DIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPH 192 (287)
T ss_pred CE-EEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEE--ECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCC
Confidence 44 4599999999 456655553 3678888 5556767666422
Q ss_pred -----------CCeeEEEcccccCCCC-CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 320 -----------GLISMHISVSQRLPFF-ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 320 -----------g~i~~~~~d~~~lpf~-d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
..|.|...+....+++ .+.||+|+|.+++.++ +++....++..+.+.|+|||+|++.+
T Consensus 193 ~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 193 EGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred CceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 1155666666554433 5789999999999765 44468899999999999999998854
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-06 Score=88.48 Aligned_cols=131 Identities=12% Similarity=0.117 Sum_probs=88.2
Q ss_pred CccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc-------------CCeeEEEccccc-CCCCCCce
Q 043503 276 TIRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR-------------GLISMHISVSQR-LPFFENTL 339 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r-------------g~i~~~~~d~~~-lpf~d~sf 339 (430)
..++||++|||+|..+..+.+.. .+|+.+ |+++.+++.|++. ..+.++.+|+.. +.-.++.|
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~V--EIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLV--DLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEE--eCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 34577999999999998888873 578887 6668899888851 237788888765 33345789
Q ss_pred eEEEEccchhhc---CCchhHHHHHHHHHHhccCCcEEEEeecccc-CcCcHHHHHHHHHHcCCEEEEEEeccc
Q 043503 340 DIVHSMHVLSNW---IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF-GSQLNETYVPMLDRIGFKKLRWNVGMK 409 (430)
Q Consensus 340 DlV~~~~~L~~~---~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~-~~~~~~~~~~ll~~~Gfk~l~~~~~~k 409 (430)
|+|++.. .... ...-....++..+.+.|+|||.++...-... .......+...++++|+.+.....-..
T Consensus 228 DVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vP 300 (374)
T PRK01581 228 DVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVP 300 (374)
T ss_pred cEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecC
Confidence 9999952 1111 1111235689999999999999877421110 011223467788999998887665443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.8e-06 Score=92.77 Aligned_cols=126 Identities=13% Similarity=0.107 Sum_probs=87.7
Q ss_pred ccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc-------------CCeeEEEcccccC-CCCCCcee
Q 043503 277 IRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR-------------GLISMHISVSQRL-PFFENTLD 340 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r-------------g~i~~~~~d~~~l-pf~d~sfD 340 (430)
.++|||+|||+|..+..+++++ .+|+.+ |+++.+.+.++++ ..++++.+|+... ...+++||
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~V--Eid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQVTLV--DLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCeEEEE--ECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999998873 588888 6668899888872 2377888887653 23357899
Q ss_pred EEEEccchhhcCCc---hhHHHHHHHHHHhccCCcEEEEeeccc-cCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 341 IVHSMHVLSNWIPD---SMLEFTLYDIYRLLRPGGIFWLDRFFC-FGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 341 lV~~~~~L~~~~~d---~~l~~~L~ei~RvLrPGG~lvl~~f~~-~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+|++...- .+.+. -...++++.+.+.|+|||.+++..-.. ...+....+.+.+++.||.+....
T Consensus 376 vIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~~~~ 443 (521)
T PRK03612 376 VIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATTPYH 443 (521)
T ss_pred EEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEEEEE
Confidence 99996332 22221 112468899999999999998853111 112234568888999999544433
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.3e-07 Score=85.32 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=79.1
Q ss_pred cEEEEEcCCccHHHHHHHHc-----CCEEEEEecCCChhHHHHHHhcC-CeeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRER-----NVTIITTSLNLDGPFNSFIASRG-LISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-----g~~Vv~vdiD~s~~~le~a~~rg-~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+|||+|||+|.++..++++ ..+|+++ |+++.+.+.|+++- .+.++.+|+...++ +++||+|+++..+...
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aV--EID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCV--ELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI 127 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEE--ECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence 35699999999999988864 4588888 55678888887662 37888889876654 5689999998665421
Q ss_pred CC---------chhHHHHHHHHHHhccCCcEEEEe----------eccccCcC-cHHHHHHHHHHcCCE
Q 043503 352 IP---------DSMLEFTLYDIYRLLRPGGIFWLD----------RFFCFGSQ-LNETYVPMLDRIGFK 400 (430)
Q Consensus 352 ~~---------d~~l~~~L~ei~RvLrPGG~lvl~----------~f~~~~~~-~~~~~~~ll~~~Gfk 400 (430)
.. ......++..+.|+++||+.++=. .++...+. ....+.+..++.|+.
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGLE 196 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccccCcccCccceeeccCcccHHHHHHHHhcCee
Confidence 10 112445888888978877763211 11101111 224577777787765
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.5e-06 Score=83.90 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=72.9
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccC-C-
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRL-P- 333 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~l-p- 333 (430)
..+....+. ++|||+|||+|.-+..++.. +.+|+++ |.++.+.+.|+++ |. +.++.+|+... +
T Consensus 61 ~~l~~~~~~---~~vLEiGt~~G~s~l~la~~~~~~g~v~ti--D~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~ 135 (234)
T PLN02781 61 SMLVKIMNA---KNTLEIGVFTGYSLLTTALALPEDGRITAI--DIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQ 135 (234)
T ss_pred HHHHHHhCC---CEEEEecCcccHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH
Confidence 334444443 45699999999988877764 4688888 5556666666544 43 78888887542 2
Q ss_pred ----CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 334 ----FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 334 ----f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
.++++||+|+.... ......++..+.+.|||||.++++..+.
T Consensus 136 l~~~~~~~~fD~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 136 LLNNDPKPEFDFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred HHhCCCCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 12468999998321 1235678999999999999999877554
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.8e-06 Score=97.19 Aligned_cols=140 Identities=11% Similarity=0.076 Sum_probs=90.1
Q ss_pred cCCchhHHHHHHHccCCCC--CccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C--------
Q 043503 257 DNGKLDYGIDQVLSMKPLG--TIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G-------- 320 (430)
Q Consensus 257 ~~~~~~~~id~lL~~~p~~--~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g-------- 320 (430)
++......++. +...+.. +..+|||+|||+|.++..++.+ ..+|+++ |+++.+++.|+++ +
T Consensus 98 PRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~av--Dis~~Al~~A~~Na~~n~l~~~~~~~ 174 (1082)
T PLN02672 98 PEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGL--DINPRAVKVAWINLYLNALDDDGLPV 174 (1082)
T ss_pred CchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHcCcccccccc
Confidence 34444444555 4333322 1235799999999999999987 4688988 6667777666432 1
Q ss_pred ----------CeeEEEcccccCCCC-CCceeEEEEccchhh-------------c------------C--------Cc--
Q 043503 321 ----------LISMHISVSQRLPFF-ENTLDIVHSMHVLSN-------------W------------I--------PD-- 354 (430)
Q Consensus 321 ----------~i~~~~~d~~~lpf~-d~sfDlV~~~~~L~~-------------~------------~--------~d-- 354 (430)
.+.++.+|.....-. ...||+|+++..... + . .+
T Consensus 175 ~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL 254 (1082)
T PLN02672 175 YDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGL 254 (1082)
T ss_pred cccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHH
Confidence 378888886542211 236999999643210 0 0 00
Q ss_pred hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHH-HHHHHcCCEEEE
Q 043503 355 SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYV-PMLDRIGFKKLR 403 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~-~ll~~~Gfk~l~ 403 (430)
+....++.+..++|+|||++++.. +....+.+. +++++.||+..+
T Consensus 255 ~~yr~i~~~a~~~L~pgG~l~lEi----G~~q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 255 GLIARAVEEGISVIKPMGIMIFNM----GGRPGQAVCERLFERRGFRITK 300 (1082)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEE----CccHHHHHHHHHHHHCCCCeeE
Confidence 012567888889999999998853 233445677 699999998754
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.7e-06 Score=83.16 Aligned_cols=96 Identities=23% Similarity=0.354 Sum_probs=64.6
Q ss_pred EEEEEcCCccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhcCC--------ee-------------------------
Q 043503 279 IGLDIGGGTGTFAARMRER-N-VTIITTSLNLDGPFNSFIASRGL--------IS------------------------- 323 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~rg~--------i~------------------------- 323 (430)
-+|||||.+|.+++.+++. + -.|+|+|| ++..++.|+++-. +.
T Consensus 61 ~~LDIGCNsG~lt~~iak~F~~r~iLGvDI--D~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 61 QALDIGCNSGFLTLSIAKDFGPRRILGVDI--DPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred eeEeccCCcchhHHHHHHhhccceeeEeec--cHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 4699999999999999998 4 46788855 4667777765411 00
Q ss_pred --------E-----EEcccccCCCCCCceeEEEEccc----hhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 324 --------M-----HISVSQRLPFFENTLDIVHSMHV----LSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 324 --------~-----~~~d~~~lpf~d~sfDlV~~~~~----L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+ +.....-+.+....||+|+|..+ --+|.++ .+..+++.+.+.|.|||+|++.
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~-GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDD-GLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccH-HHHHHHHHHHHhhCcCcEEEEc
Confidence 0 00000001123457999999433 2244455 5899999999999999999983
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.2e-06 Score=89.69 Aligned_cols=129 Identities=16% Similarity=0.197 Sum_probs=85.5
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccC----CC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRL----PF 334 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~l----pf 334 (430)
++.+..........+|||+|||+|.++..+++...+|+++ |+++.+++.|+++ + .+.++.+|+... ++
T Consensus 281 ~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~v--E~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~ 358 (431)
T TIGR00479 281 VDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGI--EVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPW 358 (431)
T ss_pred HHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEE--EcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHh
Confidence 3444443332233457999999999999999988889988 6667777776654 4 378899987542 23
Q ss_pred CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.+++||+|+....-.. ....++..+. .++|++.++++ |....+.+++. .+.+.||++....
T Consensus 359 ~~~~~D~vi~dPPr~G-----~~~~~l~~l~-~l~~~~ivyvs---c~p~tlard~~-~l~~~gy~~~~~~ 419 (431)
T TIGR00479 359 AGQIPDVLLLDPPRKG-----CAAEVLRTII-ELKPERIVYVS---CNPATLARDLE-FLCKEGYGITWVQ 419 (431)
T ss_pred cCCCCCEEEECcCCCC-----CCHHHHHHHH-hcCCCEEEEEc---CCHHHHHHHHH-HHHHCCeeEEEEE
Confidence 4567999998533211 1234555544 48999988885 55444445544 4567899877765
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=96.35 Aligned_cols=122 Identities=15% Similarity=0.133 Sum_probs=84.1
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C----CeeEEEcccccC-CCCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G----LISMHISVSQRL-PFFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g----~i~~~~~d~~~l-pf~d~sfDlV~~~~~ 347 (430)
++|||+|||+|.++..++..|. +|+++ |.++.+++.++++ | .+.++.+|+..+ .-..++||+|++...
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~v--D~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKSTTTV--DMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEEEEE--eCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 4569999999999999999876 58887 7778888777654 3 267888886442 112568999999533
Q ss_pred hhh--------cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 348 LSN--------WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 348 L~~--------~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
... +........++..+.++|+|||.++++.-. ... ..-.+.+.+.|++.....
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~---~~~-~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK---RGF-KMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC---ccC-ChhHHHHHhCCCeEEEEe
Confidence 210 001112456888899999999999886422 111 223667888999877655
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.2e-06 Score=88.40 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=82.7
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCC-CCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPF-FENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf-~d~sfDlV~~~~~L~~ 350 (430)
++|||+|||+|.++..++.++.+|+++ |.++.+++.|+++ +. +.++.+|+..+.. ..++||+|+....-..
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~v--E~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G 312 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGI--EIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRG 312 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEE--ECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCC
Confidence 467999999999999999888899998 5556666665543 43 7889998765431 1246999999644321
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE-eccc
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN-VGMK 409 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~-~~~k 409 (430)
. ...++..+. .++|++.++++ |....+.+++..+ .||++.+.. +.+.
T Consensus 313 -~----~~~~l~~l~-~~~p~~ivyvs---c~p~TlaRDl~~L---~gy~l~~~~~~DmF 360 (374)
T TIGR02085 313 -I----GKELCDYLS-QMAPKFILYSS---CNAQTMAKDIAEL---SGYQIERVQLFDMF 360 (374)
T ss_pred -C----cHHHHHHHH-hcCCCeEEEEE---eCHHHHHHHHHHh---cCceEEEEEEeccC
Confidence 1 233444443 47999999997 6666667777765 699988766 3343
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.8e-07 Score=89.12 Aligned_cols=99 Identities=20% Similarity=0.314 Sum_probs=72.2
Q ss_pred ccEEEEEcCCccHHHHHHHHcCC-EEEEEecC-CChhHHHHHHhcCC---eeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 277 IRIGLDIGGGTGTFAARMRERNV-TIITTSLN-LDGPFNSFIASRGL---ISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD-~s~~~le~a~~rg~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
-++|||+|||||.++...++.|+ +|++++.. +..-..+.++.++. +.++.+..+.+.+|-.++|+|++-+.-...
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~L 140 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFL 140 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHH
Confidence 35679999999999999999974 78888432 11122344455554 888888888877778899999995443222
Q ss_pred CCchhHHHHHHHHHHhccCCcEEE
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lv 375 (430)
.-+..++.+|..-++-|+|||.++
T Consensus 141 l~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 141 LYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHhhhhhhhhhhhhhccCCCceEc
Confidence 234457888888999999999975
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.2e-06 Score=81.11 Aligned_cols=121 Identities=23% Similarity=0.306 Sum_probs=86.0
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLPF 334 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lpf 334 (430)
|-..+...|+.+ |||.|.|+|.++++|+.. | .+|+++ +..+.+.+.|.++ |. +.+..+|....-+
T Consensus 86 I~~~~gi~pg~r---VlEAGtGSG~lt~~La~~vg~~G~v~ty--E~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~ 160 (256)
T COG2519 86 IVARLGISPGSR---VLEAGTGSGALTAYLARAVGPEGHVTTY--EIREDFAKTARENLSEFGLGDRVTLKLGDVREGID 160 (256)
T ss_pred HHHHcCCCCCCE---EEEcccCchHHHHHHHHhhCCCceEEEE--EecHHHHHHHHHHHHHhccccceEEEecccccccc
Confidence 444445555544 599999999999999975 3 577777 6667777777766 32 6777788777655
Q ss_pred CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEE
Q 043503 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
++ .||+|+. . +++ ...++..+..+|+|||.+.+.... -++. +...+.+++.||..+
T Consensus 161 ~~-~vDav~L-----D-mp~--PW~~le~~~~~Lkpgg~~~~y~P~--veQv-~kt~~~l~~~g~~~i 216 (256)
T COG2519 161 EE-DVDAVFL-----D-LPD--PWNVLEHVSDALKPGGVVVVYSPT--VEQV-EKTVEALRERGFVDI 216 (256)
T ss_pred cc-ccCEEEE-----c-CCC--hHHHHHHHHHHhCCCcEEEEEcCC--HHHH-HHHHHHHHhcCccch
Confidence 55 8999998 3 455 678999999999999998874322 1222 334455666788744
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.3e-06 Score=84.53 Aligned_cols=116 Identities=21% Similarity=0.231 Sum_probs=88.5
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEc-ccccCCCCCCceeEEEEccchhhc
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHIS-VSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~-d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
+|||-=||||++.....-.|..++|. |++..|.+-++.+ +. ..++.. |+..+|++++++|.|++-.....-
T Consensus 200 ~vlDPFcGTGgiLiEagl~G~~viG~--Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrs 277 (347)
T COG1041 200 LVLDPFCGTGGILIEAGLMGARVIGS--DIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRS 277 (347)
T ss_pred EeecCcCCccHHHHhhhhcCceEeec--chHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcc
Confidence 45999999999999999999999999 6668888877766 32 334444 999999999999999995433211
Q ss_pred C-----C-chhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEE
Q 043503 352 I-----P-DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 352 ~-----~-d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
. . ++....+|..+.++|++||++++..+. .....+...||+++..
T Consensus 278 t~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~--------~~~~~~~~~~f~v~~~ 328 (347)
T COG1041 278 TKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR--------DPRHELEELGFKVLGR 328 (347)
T ss_pred cccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC--------cchhhHhhcCceEEEE
Confidence 1 1 245778999999999999999886542 2334577899998863
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.9e-06 Score=75.67 Aligned_cols=113 Identities=11% Similarity=0.097 Sum_probs=77.3
Q ss_pred cEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHhc-----CCeeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIASR-----GLISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~r-----g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
++|+|+|||||.++...+-.| .+|+++|+| +.+++.++++ |.+.|++.|..++. ..+|.|+.+..+..+
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD--~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~~ 121 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASRVLAVDID--PEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGSQ 121 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcEEEEEecC--HHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCccc
Confidence 457999999999999999887 688998555 5666666654 45999999998865 678999998877666
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
....+. .++....+.- -.++--| .....+.+.......|+.+..
T Consensus 122 ~rhaDr-~Fl~~Ale~s---~vVYsiH----~a~~~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 122 RRHADR-PFLLKALEIS---DVVYSIH----KAGSRDFVEKFAADLGGTVTH 165 (198)
T ss_pred cccCCH-HHHHHHHHhh---heEEEee----ccccHHHHHHHHHhcCCeEEE
Confidence 544333 3444444443 2222212 122346677888899987553
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.2e-06 Score=86.26 Aligned_cols=117 Identities=14% Similarity=0.087 Sum_probs=76.9
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C----CeeEEEcccccCC--C--CCCceeEEEE
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G----LISMHISVSQRLP--F--FENTLDIVHS 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g----~i~~~~~d~~~lp--f--~d~sfDlV~~ 344 (430)
++|||+|||+|.++..++..+. +|+++ |.++.+++.++++ | .+.++.+|+..+- + ..++||+|++
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga~~V~~V--D~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGCSQVVSV--DTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 4569999999999988776654 78888 6667777766543 4 2678888875531 1 2468999999
Q ss_pred ccchhhcCCc--------hhHHHHHHHHHHhccCCcEEEEeeccccCc----CcHHHHHHHHHHcCCE
Q 043503 345 MHVLSNWIPD--------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGS----QLNETYVPMLDRIGFK 400 (430)
Q Consensus 345 ~~~L~~~~~d--------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~----~~~~~~~~ll~~~Gfk 400 (430)
..... ... .....++....++|+|||.+++.. |... ...+.+.+...++|-+
T Consensus 300 DPP~f--~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s--cs~~~~~~~f~~~v~~aa~~~~~~ 363 (396)
T PRK15128 300 DPPKF--VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS--CSGLMTSDLFQKIIADAAIDAGRD 363 (396)
T ss_pred CCCCC--CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe--CCCcCCHHHHHHHHHHHHHHcCCe
Confidence 64431 111 124455667889999999998743 3221 1334455556666544
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.8e-06 Score=81.98 Aligned_cols=98 Identities=18% Similarity=0.160 Sum_probs=68.3
Q ss_pred ccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----------CCeeEEEccccc-CCCCCCceeEEE
Q 043503 277 IRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----------GLISMHISVSQR-LPFFENTLDIVH 343 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~-lpf~d~sfDlV~ 343 (430)
.++||+||||+|.++..+++.. .+++++ |+++.+++.+++. ..+.++.+|+.. +...+++||+|+
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~v--eid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLV--DIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEE--eCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3577999999999999988773 467777 5567777776653 125666666543 222357899999
Q ss_pred EccchhhcCCchh--HHHHHHHHHHhccCCcEEEEe
Q 043503 344 SMHVLSNWIPDSM--LEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 344 ~~~~L~~~~~d~~--l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+.... ...+... ...++..+.+.|+|||.+++.
T Consensus 151 ~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 85432 2222211 457889999999999999885
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.7e-05 Score=78.19 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=86.4
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHH---HHHHhc-----------------------------------
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFN---SFIASR----------------------------------- 319 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~l---e~a~~r----------------------------------- 319 (430)
.+||--|||.|+++-.++.+|+.+.+. +.|--|+ .++...
T Consensus 58 ~~VLVPGsGLGRLa~Eia~~G~~~~gn--E~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~ 135 (270)
T PF07942_consen 58 IRVLVPGSGLGRLAWEIAKLGYAVQGN--EFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD 135 (270)
T ss_pred cEEEEcCCCcchHHHHHhhccceEEEE--EchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence 356999999999999999999999988 6666654 222110
Q ss_pred --------CCeeEEEcccccCCCCC---CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEE-----Eeecccc-
Q 043503 320 --------GLISMHISVSQRLPFFE---NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFW-----LDRFFCF- 382 (430)
Q Consensus 320 --------g~i~~~~~d~~~lpf~d---~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lv-----l~~f~~~- 382 (430)
+.+.+..+|+..+..++ ++||+|++.+.++- . ..+-.++..|.++|||||+++ +-||-..
T Consensus 136 p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT-A--~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 136 PSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT-A--ENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred cccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec-h--HHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 11344455555544334 69999999766632 2 247889999999999999764 2232222
Q ss_pred -C----cC-cHHHHHHHHHHcCCEEEEEEec
Q 043503 383 -G----SQ-LNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 383 -~----~~-~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
. -+ -.+++..++++.||++++....
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~ 243 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEESS 243 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 0 11 2478999999999999987763
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.8e-06 Score=83.11 Aligned_cols=98 Identities=19% Similarity=0.208 Sum_probs=69.4
Q ss_pred CccEEEEEcCCccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhc----------CCeeEEEcccccC-C-CCCCceeE
Q 043503 276 TIRIGLDIGGGTGTFAARMRER-N-VTIITTSLNLDGPFNSFIASR----------GLISMHISVSQRL-P-FFENTLDI 341 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~l-p-f~d~sfDl 341 (430)
..++||+||||.|..+..+++. + .+|+.+ |+++.+++.+++. ..+.++.+|+..+ . .++++||+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~V--EiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDIC--EIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEE--ECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 3467799999999999999987 3 467777 5557777777653 2378888886443 1 23578999
Q ss_pred EEEccchhhcCCch--hHHHHHHHHHHhccCCcEEEE
Q 043503 342 VHSMHVLSNWIPDS--MLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 342 V~~~~~L~~~~~d~--~l~~~L~ei~RvLrPGG~lvl 376 (430)
|++.. ...+.+.. ....++..+.++|+|||.++.
T Consensus 169 Ii~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 169 IIVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EEEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 99942 22222211 134689999999999999976
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-05 Score=75.84 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=65.0
Q ss_pred cEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----CC--eeEEEccccc-CCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQR-LPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~-lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||+|||+|.++..++.+ ..+|+++ |.++...+.++++ +. +.++.+|+.. ++...++||+|++...+.
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a~~V~~v--E~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYAAGATLL--EMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCCCEEEEE--ECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 45799999999999976666 4688888 5556665555433 43 7788888654 322345799999976642
Q ss_pred hcCCchhHHHHHHHHHH--hccCCcEEEEeecc
Q 043503 350 NWIPDSMLEFTLYDIYR--LLRPGGIFWLDRFF 380 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~R--vLrPGG~lvl~~f~ 380 (430)
. +....++..+.. .|+|+|.+++.+..
T Consensus 133 ~----g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 133 K----GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred C----ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 2 123445555544 37999999997643
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.5e-05 Score=76.36 Aligned_cols=98 Identities=14% Similarity=0.200 Sum_probs=71.6
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC---eeEEEccccc-CC-C----CCCceeE
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQR-LP-F----FENTLDI 341 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~-lp-f----~d~sfDl 341 (430)
++|||||+|+|..+..++.. +.+|+++ |.++...+.|+++ |. +.++.+++.. ++ + .+++||+
T Consensus 120 k~VLEIGT~tGySal~lA~al~~~G~V~Ti--E~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 120 ERCIEVGVYTGYSSLAVALVLPESGCLVAC--ERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 45699999999999999874 4578887 5556666666543 44 8888888633 32 1 1468999
Q ss_pred EEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
|+.-. +......++..+.+.|+|||.++++..+..+
T Consensus 198 VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G 233 (278)
T PLN02476 198 AFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHG 233 (278)
T ss_pred EEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCC
Confidence 99832 1223678899999999999999998776554
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.5e-05 Score=77.80 Aligned_cols=123 Identities=21% Similarity=0.237 Sum_probs=80.6
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPF 334 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf 334 (430)
|-..+.+.|+.. |||.|.|+|.++..|+.. ..+|++. |..+...+.|+++ | .+.+.+.|...-.|
T Consensus 32 I~~~l~i~pG~~---VlEaGtGSG~lt~~l~r~v~p~G~v~t~--E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 32 ILMRLDIRPGSR---VLEAGTGSGSLTHALARAVGPTGHVYTY--EFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHTT--TT-E---EEEE--TTSHHHHHHHHHHTTTSEEEEE--ESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred HHHHcCCCCCCE---EEEecCCcHHHHHHHHHHhCCCeEEEcc--ccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 334455556544 599999999999999976 3588877 6678887777665 3 38888888754333
Q ss_pred C---CCceeEEEEccchhhcCCchhHHHHHHHHHHhc-cCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 335 F---ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLL-RPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 335 ~---d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvL-rPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
. +..+|.|+.- +|+ ...++..+.++| ||||.+..-... -++. ....+.+++.||..++
T Consensus 107 ~~~~~~~~DavfLD------lp~--Pw~~i~~~~~~L~~~gG~i~~fsP~--ieQv-~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 107 DEELESDFDAVFLD------LPD--PWEAIPHAKRALKKPGGRICCFSPC--IEQV-QKTVEALREHGFTDIE 168 (247)
T ss_dssp STT-TTSEEEEEEE------SSS--GGGGHHHHHHHE-EEEEEEEEEESS--HHHH-HHHHHHHHHTTEEEEE
T ss_pred cccccCcccEEEEe------CCC--HHHHHHHHHHHHhcCCceEEEECCC--HHHH-HHHHHHHHHCCCeeeE
Confidence 2 3679999982 343 456899999999 899998764222 1222 3345567788998554
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.3e-06 Score=86.38 Aligned_cols=97 Identities=19% Similarity=0.281 Sum_probs=66.1
Q ss_pred ccEEEEEcCCccHHHHHHHHcC------CEEEEEecCCChhH-H-HHHHhc---CCeeEEEcccccCCCCCCceeEEEEc
Q 043503 277 IRIGLDIGGGTGTFAARMRERN------VTIITTSLNLDGPF-N-SFIASR---GLISMHISVSQRLPFFENTLDIVHSM 345 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g------~~Vv~vdiD~s~~~-l-e~a~~r---g~i~~~~~d~~~lpf~d~sfDlV~~~ 345 (430)
..+|||+|||+|.+....++.+ .+|++++-+..+.. + +.++.+ +.|.++.+|.+.+..+. .+|+|++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVS- 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVS- 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEE-
Confidence 3578999999999987666553 68898854433222 1 222444 44999999999988654 8999999
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEE
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lv 375 (430)
..++.+...+.....|....|.|||||.++
T Consensus 265 ElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 555555555567778999999999999975
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.2e-05 Score=76.83 Aligned_cols=108 Identities=20% Similarity=0.231 Sum_probs=78.3
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC---eeEEE-ccc-ccC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL---ISMHI-SVS-QRL 332 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~-~d~-~~l 332 (430)
+..++..... ++||+||.+.|.-+..|+.. +.+++++ |.++.+.+.|+++ |. +.++. +|+ +-+
T Consensus 51 L~~L~~~~~~---k~iLEiGT~~GySal~mA~~l~~~g~l~ti--E~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l 125 (219)
T COG4122 51 LRLLARLSGP---KRILEIGTAIGYSALWMALALPDDGRLTTI--ERDEERAEIARENLAEAGVDDRIELLLGGDALDVL 125 (219)
T ss_pred HHHHHHhcCC---ceEEEeecccCHHHHHHHhhCCCCCeEEEE--eCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHH
Confidence 4455554443 45699999999999999986 4578877 6668888777765 43 66666 354 222
Q ss_pred C-CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 333 P-FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 333 p-f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
. ...++||+|+.- +.-. ....++..+.+.|||||.++++..+..+
T Consensus 126 ~~~~~~~fDliFID----adK~--~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 126 SRLLDGSFDLVFID----ADKA--DYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred HhccCCCccEEEEe----CChh--hCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 2 457899999983 2222 3668999999999999999999887654
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.1e-06 Score=81.40 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=59.4
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc---CCeeEEEcccccCCCCCCceeEE
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR---GLISMHISVSQRLPFFENTLDIV 342 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r---g~i~~~~~d~~~lpf~d~sfDlV 342 (430)
+.++.........+|||+|||+|.++..+++++.+|+++ |+++.|.+.++++ ..+.++.+|+..+++++-.+|.|
T Consensus 32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~av--E~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~v 109 (272)
T PRK00274 32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAV--EIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKV 109 (272)
T ss_pred HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEE--ECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceE
Confidence 334433332333467999999999999999998789988 5567888887765 35889999998888654335888
Q ss_pred EEccch
Q 043503 343 HSMHVL 348 (430)
Q Consensus 343 ~~~~~L 348 (430)
+++...
T Consensus 110 v~NlPY 115 (272)
T PRK00274 110 VANLPY 115 (272)
T ss_pred EEeCCc
Confidence 886443
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.9e-05 Score=71.77 Aligned_cols=126 Identities=16% Similarity=0.241 Sum_probs=83.8
Q ss_pred CCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCCh--hHHHHHHhcCC-eeEEEcccccCCCCCCceeEEEEcc
Q 043503 273 PLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDG--PFNSFIASRGL-ISMHISVSQRLPFFENTLDIVHSMH 346 (430)
Q Consensus 273 p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~--~~le~a~~rg~-i~~~~~d~~~lpf~d~sfDlV~~~~ 346 (430)
......++||||||+|.....+++. ++..+++|+++.+ ..++.|+.++. +..+..|...- ...++.|+++.+.
T Consensus 40 ~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 40 KGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNP 118 (209)
T ss_pred hhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECC
Confidence 3344677899999999999999887 4555666555432 23455555544 56666665331 2248899998864
Q ss_pred chhh--------------cC--Cch--hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEE
Q 043503 347 VLSN--------------WI--PDS--MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 347 ~L~~--------------~~--~d~--~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
.... |. .++ -.++++..+..+|.|.|+|++...- ....+++.++++..||...
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~---~N~p~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR---ANKPKEILKILEKKGYGVR 189 (209)
T ss_pred CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh---hcCHHHHHHHHhhccccee
Confidence 4321 11 121 2677888899999999999986433 3345778889999999754
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.4e-05 Score=80.62 Aligned_cols=99 Identities=18% Similarity=0.263 Sum_probs=72.2
Q ss_pred CccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHH-HHHHhc-CCeeEEEccc-ccCCCCCCceeEEEEccchhhcC
Q 043503 276 TIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFN-SFIASR-GLISMHISVS-QRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~l-e~a~~r-g~i~~~~~d~-~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
.+...+|+|+|.|+.+..+...-.+|-++++| .+.+ +.+..- --|..+.+|. ++.| . -|+|++.++++||.
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infd--lp~v~~~a~~~~~gV~~v~gdmfq~~P--~--~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFD--LPFVLAAAPYLAPGVEHVAGDMFQDTP--K--GDAIWMKWILHDWT 250 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecC--HHHHHhhhhhhcCCcceecccccccCC--C--cCeEEEEeecccCC
Confidence 46788999999999999999874445566444 3433 333322 1155566664 5554 3 36999999999987
Q ss_pred CchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
++ +...+|+++...|+|||.+++.+...
T Consensus 251 De-dcvkiLknC~~sL~~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 251 DE-DCVKILKNCKKSLPPGGKIIVVENVT 278 (342)
T ss_pred hH-HHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 65 69999999999999999999877643
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.1e-05 Score=79.04 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=55.1
Q ss_pred ccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCCCceeEEEEccch
Q 043503 277 IRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
..+|||||||+|.++..+++++.+|+++ |+++.+.+.++++ +.+.++.+|+..++++ .||.|+++...
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~~v~~v--Eid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~NlPy 101 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAKKVYAI--ELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSNLPY 101 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCCEEEEE--ECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEcCCc
Confidence 3557999999999999999998899988 5567777777654 4488999999887765 48999997555
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.2e-05 Score=76.29 Aligned_cols=108 Identities=23% Similarity=0.227 Sum_probs=75.5
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C---CeeEEEccccc-CC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQR-LP 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~-lp 333 (430)
+..+...... ++||+||+++|.-+..|++. +.+|++++ .++...+.|++. | .+.++.+++.. ++
T Consensus 37 L~~l~~~~~~---k~vLEIGt~~GySal~la~~l~~~g~i~tiE--~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~ 111 (205)
T PF01596_consen 37 LQMLVRLTRP---KRVLEIGTFTGYSALWLAEALPEDGKITTIE--IDPERAEIARENFRKAGLDDRIEVIEGDALEVLP 111 (205)
T ss_dssp HHHHHHHHT----SEEEEESTTTSHHHHHHHHTSTTTSEEEEEE--SSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHH
T ss_pred HHHHHHhcCC---ceEEEeccccccHHHHHHHhhcccceEEEec--CcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHH
Confidence 3444444433 45699999999999999986 68999885 456666655432 4 38999998643 22
Q ss_pred -----CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 334 -----FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 334 -----f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
...++||+|+.-.. ......++..+.+.|+|||.++++..+..+
T Consensus 112 ~l~~~~~~~~fD~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~G 160 (205)
T PF01596_consen 112 ELANDGEEGQFDFVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWRG 160 (205)
T ss_dssp HHHHTTTTTSEEEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGGG
T ss_pred HHHhccCCCceeEEEEccc------ccchhhHHHHHhhhccCCeEEEEccccccc
Confidence 11358999999422 223667888999999999999998877544
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.2e-05 Score=63.86 Aligned_cols=95 Identities=25% Similarity=0.466 Sum_probs=67.2
Q ss_pred EEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhcC----C--eeEEEccccc--CCCCC-CceeEEEEccc
Q 043503 280 GLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASRG----L--ISMHISVSQR--LPFFE-NTLDIVHSMHV 347 (430)
Q Consensus 280 VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~rg----~--i~~~~~d~~~--lpf~d-~sfDlV~~~~~ 347 (430)
++|+|||+|... .+... +..++++ |.+..++..+.... . +.+...+... +++.+ ..||++ +...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGV--DLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEE--eCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 699999999965 33333 3477775 77777776644332 1 4667777655 77777 589999 6555
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
..++.. ....+.++.++++|+|.+++.....
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 545443 5789999999999999998876553
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1e-05 Score=77.91 Aligned_cols=97 Identities=23% Similarity=0.280 Sum_probs=70.0
Q ss_pred cEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhH----HHHHHhcCC--eeEEEcccccCC---CCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPF----NSFIASRGL--ISMHISVSQRLP---FFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~----le~a~~rg~--i~~~~~d~~~lp---f~d~sfDlV~~~~ 346 (430)
.++||||||.|.+...+|+++ ..++|+ ++..+. +..+.+.++ +.+++.|+..+- +++++.|-|..++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGi--Ei~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGI--EIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEE--EEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 468999999999999999994 556776 544443 344455555 788888875533 3566999999954
Q ss_pred chhhcCCc------hhHHHHHHHHHHhccCCcEEEEe
Q 043503 347 VLSNWIPD------SMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 347 ~L~~~~~d------~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.= .|... -....++..+.++|+|||.|.+.
T Consensus 128 PD-PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 128 PD-PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CC-CCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 43 44421 12346999999999999999885
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.7e-05 Score=76.71 Aligned_cols=100 Identities=21% Similarity=0.266 Sum_probs=69.1
Q ss_pred CCccEEEEEcCCcc----HHHHHHHHc-------CCEEEEEecCCChhHHHHHHhc------------------------
Q 043503 275 GTIRIGLDIGGGTG----TFAARMRER-------NVTIITTSLNLDGPFNSFIASR------------------------ 319 (430)
Q Consensus 275 ~~ir~VLDIGcGtG----~~a~~La~~-------g~~Vv~vdiD~s~~~le~a~~r------------------------ 319 (430)
+.+ +|+-+||+|| ++|..+.+. .++|+++|+ +...++.|+.-
T Consensus 96 ~~i-rIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDI--d~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~ 172 (268)
T COG1352 96 RPI-RIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDI--DLSVLEKARAGIYPSRELLRGLPPELLRRYFERGG 172 (268)
T ss_pred Cce-EEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEEC--CHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecC
Confidence 344 4599999999 455555554 267888855 45556555311
Q ss_pred -C----------CeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 320 -G----------LISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 320 -g----------~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
| .|.|...+.-.-++..+.||+|+|.+++.. .+......++..++..|+|||+|++.+
T Consensus 173 ~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIY-Fd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 173 DGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIY-FDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred CCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEe-eCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1 144555444333325677999999999965 455568899999999999999999853
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.4e-05 Score=72.58 Aligned_cols=120 Identities=20% Similarity=0.282 Sum_probs=79.0
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCE---------EEEEecCCChhHHHHHHhc----CC---eeEEEcccccCCCCCCce
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVT---------IITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLPFFENTL 339 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~---------Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lpf~d~sf 339 (430)
.++||--||+|++.++.+.. +.. +++. |+++.+++.++++ |. +.+...|+..+++.++++
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~--Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~ 107 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGS--DIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSV 107 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEE--ESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBS
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEec--CCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCC
Confidence 45799999999999888766 444 6788 5557777666554 33 788899999999888999
Q ss_pred eEEEEccchhhcCC-----chhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEec
Q 043503 340 DIVHSMHVLSNWIP-----DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 340 DlV~~~~~L~~~~~-----d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
|+|+++.....-.. ......++.++.|+|++...+++.. .+.+.+.+...+++......+
T Consensus 108 d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~--------~~~~~~~~~~~~~~~~~~~~~ 172 (179)
T PF01170_consen 108 DAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS--------NRELEKALGLKGWRKRKLYNG 172 (179)
T ss_dssp CEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES--------CCCHHHHHTSTTSEEEEEEET
T ss_pred CEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC--------CHHHHHHhcchhhceEEEEEe
Confidence 99999755532222 1234567899999999954444432 123556677778887765543
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.5e-05 Score=83.63 Aligned_cols=123 Identities=13% Similarity=0.116 Sum_probs=81.5
Q ss_pred CCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHH----HHHHhcCC--eeEEEcccccCC--CCCCceeEEE
Q 043503 274 LGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFN----SFIASRGL--ISMHISVSQRLP--FFENTLDIVH 343 (430)
Q Consensus 274 ~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~l----e~a~~rg~--i~~~~~d~~~lp--f~d~sfDlV~ 343 (430)
+....++||||||.|.+...+|.+ ...++|+ |+..... ..+.++++ +.++..++..+. ++++++|-|+
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGi--E~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAKMNPDALFIGV--EVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHHhCCCCCEEEE--EeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 334567999999999999999998 5677887 4444433 33334444 566666665433 6789999999
Q ss_pred EccchhhcCCch------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcC-CEEE
Q 043503 344 SMHVLSNWIPDS------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIG-FKKL 402 (430)
Q Consensus 344 ~~~~L~~~~~d~------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~G-fk~l 402 (430)
..+.= .|.... ....++..+.++|+|||.+.+.+ ......+.....+.+.+ |+..
T Consensus 423 i~FPD-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T---D~~~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 423 ILFPD-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS---DIENYFYEAIELIQQNGNFEII 484 (506)
T ss_pred EECCC-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc---CCHHHHHHHHHHHHhCCCeEec
Confidence 96543 453211 23468999999999999998752 22233344455556655 7654
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.7e-05 Score=74.13 Aligned_cols=79 Identities=11% Similarity=0.155 Sum_probs=57.7
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCCCcee-
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFENTLD- 340 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d~sfD- 340 (430)
+.++.........+|||+|||+|.++..+++++..|+++ |.++.+.+.++++ +.+.++.+|+..++++ .+|
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~i--E~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~ 94 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAI--EIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPK 94 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEE--ECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCC
Confidence 444443333344567999999999999999998888888 5567777777654 3478899999888765 466
Q ss_pred --EEEEccch
Q 043503 341 --IVHSMHVL 348 (430)
Q Consensus 341 --lV~~~~~L 348 (430)
+|+++-.+
T Consensus 95 ~~~vvsNlPy 104 (253)
T TIGR00755 95 QLKVVSNLPY 104 (253)
T ss_pred cceEEEcCCh
Confidence 77775443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.8e-06 Score=81.79 Aligned_cols=107 Identities=27% Similarity=0.386 Sum_probs=80.6
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEE
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHS 344 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~ 344 (430)
+.+++...+.+.+ ++|+|||.|-....= -.+-+++. |.+...+.-++..|.......|+-.+|+.+.+||.+++
T Consensus 36 v~qfl~~~~~gsv--~~d~gCGngky~~~~--p~~~~ig~--D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 36 VRQFLDSQPTGSV--GLDVGCGNGKYLGVN--PLCLIIGC--DLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALS 109 (293)
T ss_pred HHHHHhccCCcce--eeecccCCcccCcCC--Ccceeeec--chhhhhccccccCCCceeehhhhhcCCCCCCccccchh
Confidence 4455555565544 899999999644211 13455666 66666666666555556778899999999999999999
Q ss_pred ccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 345 MHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 345 ~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
..+++|+........+++++.|+|||||...+.
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999988887777888999999999999996553
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.98 E-value=5e-05 Score=70.00 Aligned_cols=100 Identities=21% Similarity=0.250 Sum_probs=61.0
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChh-HHHHHHhcC-----CeeEEEccccc-C--C-CCCCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGP-FNSFIASRG-----LISMHISVSQR-L--P-FFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~-~le~a~~rg-----~i~~~~~d~~~-l--p-f~d~sfDlV~~~ 345 (430)
++|||+|||+|..+..++.. ..+|+.+|.+..-+ +...++.++ .+.+...+... . . ....+||+|+++
T Consensus 47 ~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Ilas 126 (173)
T PF10294_consen 47 KRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILAS 126 (173)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEEE
T ss_pred ceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEEe
Confidence 46799999999999999988 67889886654111 112333333 25555554422 2 1 235689999999
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
.++.. ++..+.++.-+.++|+|+|.+++..-.
T Consensus 127 Dv~Y~---~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 127 DVLYD---EELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp S--S----GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred cccch---HHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 99953 335888999999999999998886533
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0001 Score=72.15 Aligned_cols=98 Identities=20% Similarity=0.301 Sum_probs=67.7
Q ss_pred EEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-------CCeeEEEccc-----ccCCCCCCceeEEEE
Q 043503 279 IGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-------GLISMHISVS-----QRLPFFENTLDIVHS 344 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~-----~~lpf~d~sfDlV~~ 344 (430)
++||+|||+|.++..++.. .++|+++ |.+...+..|.++ |.+.++..+. ...+..++.+|+++|
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~Ai--D~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTAI--DVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEEE--eccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 5799999999999999877 6777777 7777777666554 5566654432 233355789999999
Q ss_pred ccchhhcC-------------C--------c--hhHHHHHHHHHHhccCCcEEEEee
Q 043503 345 MHVLSNWI-------------P--------D--SMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 345 ~~~L~~~~-------------~--------d--~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+......- + + ..+..++.-+.|.|+|||.+++..
T Consensus 229 NPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 229 NPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred CCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 64432100 0 0 123446677889999999999864
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00016 Score=73.08 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=48.8
Q ss_pred CCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHh----c-CC---eeEEE-cccccCC----CCCC
Q 043503 273 PLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIAS----R-GL---ISMHI-SVSQRLP----FFEN 337 (430)
Q Consensus 273 p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~----r-g~---i~~~~-~d~~~lp----f~d~ 337 (430)
+.+...++||||||+|.+...++.+ +.+++++|+ ++.+++.|++ + ++ +.+.. .+...+. .+++
T Consensus 111 p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDI--d~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 111 PRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDI--DPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeC--CHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCC
Confidence 3333456799999999888877766 788999855 4666655543 3 23 55543 2322221 2467
Q ss_pred ceeEEEEccchh
Q 043503 338 TLDIVHSMHVLS 349 (430)
Q Consensus 338 sfDlV~~~~~L~ 349 (430)
.||+|+|+..++
T Consensus 189 ~fDlivcNPPf~ 200 (321)
T PRK11727 189 RFDATLCNPPFH 200 (321)
T ss_pred ceEEEEeCCCCc
Confidence 899999987763
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.2e-05 Score=73.76 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=56.3
Q ss_pred ccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHH-HHhcCCe-eEEEcccccCC-----CCCCceeEEEEccch
Q 043503 277 IRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSF-IASRGLI-SMHISVSQRLP-----FFENTLDIVHSMHVL 348 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~-a~~rg~i-~~~~~d~~~lp-----f~d~sfDlV~~~~~L 348 (430)
.+++||+|||||.|+..++++|+ +|+++ |++..|+.. .+++..+ .+...+++.+. ..-..+|+++++..
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~ga~~v~av--D~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~- 152 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQKGAKEVYGV--DVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI- 152 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHcCCCEEEEE--eCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH-
Confidence 34679999999999999999965 78888 667766654 4443332 23333444322 11135776666432
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
..+..+.+.|+| |.+++
T Consensus 153 ----------~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 153 ----------SILPELDLLLNP-NDLTL 169 (228)
T ss_pred ----------hHHHHHHHHhCc-CeEEE
Confidence 257899999999 77654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.1e-05 Score=77.38 Aligned_cols=116 Identities=13% Similarity=0.159 Sum_probs=78.8
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccC-C-CC--------------C
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRL-P-FF--------------E 336 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~l-p-f~--------------d 336 (430)
++||++||+|.++..+++...+|+++ |.++.+++.++++ +. +.++.+|+.++ + +. .
T Consensus 209 ~vLDl~~G~G~~sl~la~~~~~v~~v--E~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNFRRVLAT--EISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred eEEEEeccccHHHHHHHhhCCEEEEE--ECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 47999999999999998877789988 6667777766654 43 78888887552 1 10 1
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE-eccc
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN-VGMK 409 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~-~~~k 409 (430)
..||+|+.-..-.. . ...++..+.+ |++.+|++ |....+.+++..+. + ||++.+.. +++.
T Consensus 287 ~~~D~v~lDPPR~G-~----~~~~l~~l~~---~~~ivyvS---C~p~tlarDl~~L~-~-gY~l~~v~~~DmF 347 (362)
T PRK05031 287 YNFSTIFVDPPRAG-L----DDETLKLVQA---YERILYIS---CNPETLCENLETLS-Q-THKVERFALFDQF 347 (362)
T ss_pred CCCCEEEECCCCCC-C----cHHHHHHHHc---cCCEEEEE---eCHHHHHHHHHHHc-C-CcEEEEEEEcccC
Confidence 25899999544211 1 2344444443 78888886 66666667776654 3 99988876 3343
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.1e-05 Score=73.51 Aligned_cols=108 Identities=15% Similarity=0.168 Sum_probs=74.2
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC---eeEEEccccc-CC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQR-LP 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~-lp 333 (430)
+..++..... ++||+||+++|.-+..|+.. +.++++++. ++...+.|++. |. |.++.+++.. ++
T Consensus 71 L~~l~~~~~a---k~iLEiGT~~GySal~la~al~~~g~v~tiE~--~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~ 145 (247)
T PLN02589 71 LNMLLKLINA---KNTMEIGVYTGYSLLATALALPEDGKILAMDI--NRENYELGLPVIQKAGVAHKIDFREGPALPVLD 145 (247)
T ss_pred HHHHHHHhCC---CEEEEEeChhhHHHHHHHhhCCCCCEEEEEeC--CHHHHHHHHHHHHHCCCCCceEEEeccHHHHHH
Confidence 3444444443 45699999999999999875 568898855 45555555433 43 8888887633 33
Q ss_pred -C-----CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 334 -F-----FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 334 -f-----~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
+ ..++||+|+.-.- . .....++..+.+.|+|||.++++..+..+
T Consensus 146 ~l~~~~~~~~~fD~iFiDad-----K-~~Y~~y~~~~l~ll~~GGviv~DNvl~~G 195 (247)
T PLN02589 146 QMIEDGKYHGTFDFIFVDAD-----K-DNYINYHKRLIDLVKVGGVIGYDNTLWNG 195 (247)
T ss_pred HHHhccccCCcccEEEecCC-----H-HHhHHHHHHHHHhcCCCeEEEEcCCCCCC
Confidence 1 1368999999422 1 23567788889999999999998766543
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0001 Score=70.15 Aligned_cols=118 Identities=19% Similarity=0.318 Sum_probs=83.3
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCC---CCCceeEEEEccchhhcCCc-
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPF---FENTLDIVHSMHVLSNWIPD- 354 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf---~d~sfDlV~~~~~L~~~~~d- 354 (430)
++|||||=+...+..... -..|+.+|++... ..+...|+-..|. +++.||+|+++.++ +++|+
T Consensus 54 rlLEVGals~~N~~s~~~-~fdvt~IDLns~~-----------~~I~qqDFm~rplp~~~~e~FdvIs~SLVL-NfVP~p 120 (219)
T PF11968_consen 54 RLLEVGALSTDNACSTSG-WFDVTRIDLNSQH-----------PGILQQDFMERPLPKNESEKFDVISLSLVL-NFVPDP 120 (219)
T ss_pred eEEeecccCCCCcccccC-ceeeEEeecCCCC-----------CCceeeccccCCCCCCcccceeEEEEEEEE-eeCCCH
Confidence 569999976654433221 3457777665433 3456777766665 37799999999999 66764
Q ss_pred hhHHHHHHHHHHhccCCcE-----EEEeecc-ccC-cC--cHHHHHHHHHHcCCEEEEEEeccc
Q 043503 355 SMLEFTLYDIYRLLRPGGI-----FWLDRFF-CFG-SQ--LNETYVPMLDRIGFKKLRWNVGMK 409 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~-----lvl~~f~-~~~-~~--~~~~~~~ll~~~Gfk~l~~~~~~k 409 (430)
.....++..+.+.|+|+|. +++.... |.. .. ..+.+..+++..||..++.....|
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~K 184 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKSKK 184 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEecCe
Confidence 4577899999999999999 7665433 221 22 336789999999999998776655
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=6.5e-05 Score=70.97 Aligned_cols=93 Identities=16% Similarity=0.252 Sum_probs=67.5
Q ss_pred cCCCCCccEEEEEcCCccHHHHHHHHc----CCEEEEEecCCChhHHHHHHhc----------------CCeeEEEcccc
Q 043503 271 MKPLGTIRIGLDIGGGTGTFAARMRER----NVTIITTSLNLDGPFNSFIASR----------------GLISMHISVSQ 330 (430)
Q Consensus 271 ~~p~~~ir~VLDIGcGtG~~a~~La~~----g~~Vv~vdiD~s~~~le~a~~r----------------g~i~~~~~d~~ 330 (430)
+.|+.+. ||+|.|+|.++..++.. |..++|+ +..++.++.++++ +.+.++++|..
T Consensus 80 L~pG~s~---LdvGsGSGYLt~~~~~mvg~~g~~~~GI--Eh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr 154 (237)
T KOG1661|consen 80 LQPGASF---LDVGSGSGYLTACFARMVGATGGNVHGI--EHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGR 154 (237)
T ss_pred hccCcce---eecCCCccHHHHHHHHHhcCCCccccch--hhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcc
Confidence 3677666 99999999999988865 3333444 7667666655433 44788899988
Q ss_pred cCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 331 RLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 331 ~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
...-+..+||.||+...- ....+++-..|+|||.+++-
T Consensus 155 ~g~~e~a~YDaIhvGAaa---------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 155 KGYAEQAPYDAIHVGAAA---------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ccCCccCCcceEEEccCc---------cccHHHHHHhhccCCeEEEe
Confidence 877678899999995222 23455777789999999883
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00015 Score=74.22 Aligned_cols=116 Identities=9% Similarity=0.078 Sum_probs=78.7
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCC-----------C-----C
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPF-----------F-----E 336 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf-----------~-----d 336 (430)
.+||++||+|.++..+++...+|+++ |.++.+++.++++ +. +.++.+|+.++-- . .
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~v--E~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLAT--EIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEE--ECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 37999999999999998876788988 6678888777654 43 7888888755210 0 1
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE-eccc
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN-VGMK 409 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~-~~~k 409 (430)
..||+|+....-.. . ...++..+. +|++.+|++ |....+.+++..+. .||++.+.. +++.
T Consensus 278 ~~~d~v~lDPPR~G-~----~~~~l~~l~---~~~~ivYvs---C~p~tlaRDl~~L~--~~Y~l~~v~~~DmF 338 (353)
T TIGR02143 278 YNCSTIFVDPPRAG-L----DPDTCKLVQ---AYERILYIS---CNPETLKANLEQLS--ETHRVERFALFDQF 338 (353)
T ss_pred CCCCEEEECCCCCC-C----cHHHHHHHH---cCCcEEEEE---cCHHHHHHHHHHHh--cCcEEEEEEEcccC
Confidence 23799998544211 1 233444443 489999996 77666777777655 349888766 4444
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00018 Score=67.34 Aligned_cols=95 Identities=14% Similarity=0.065 Sum_probs=61.8
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C---CeeEEEccccc-CC-C-C-CCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G---LISMHISVSQR-LP-F-F-ENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~-lp-f-~-d~sfDlV~~~ 345 (430)
.++||++||+|.++..++.+|+ .|+++ |.+....+.++++ + .+.++.+|+.+ +. + . ...||+|+..
T Consensus 51 ~~vLDLfaGsG~lglea~srga~~v~~v--E~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAKVAFLE--EDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCCEEEEE--eCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 3469999999999999999976 78888 5555555544433 3 36788888733 22 1 1 2247888885
Q ss_pred cchhhcCCchhHHHHHHHH--HHhccCCcEEEEee
Q 043503 346 HVLSNWIPDSMLEFTLYDI--YRLLRPGGIFWLDR 378 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei--~RvLrPGG~lvl~~ 378 (430)
..+.. . .....+..+ ...|++||.+++.+
T Consensus 129 PPy~~---~-~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 129 PPFFN---G-ALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred cCCCC---C-cHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 54422 1 133444444 34789999888865
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.79 E-value=6.2e-05 Score=69.23 Aligned_cols=124 Identities=20% Similarity=0.281 Sum_probs=67.5
Q ss_pred CCCCccEEEEEcCCccHHHHHHHHcC---CEEEEEecCCChhHHHHHHhcCCeeEEEcccc------cCC--C--CCCce
Q 043503 273 PLGTIRIGLDIGGGTGTFAARMRERN---VTIITTSLNLDGPFNSFIASRGLISMHISVSQ------RLP--F--FENTL 339 (430)
Q Consensus 273 p~~~ir~VLDIGcGtG~~a~~La~~g---~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~------~lp--f--~d~sf 339 (430)
..+...++||+||++|.|+..+.+++ ..|+++|+....+. ..+.++.+|.. .+. + ....+
T Consensus 20 ~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-------~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 20 KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-------QNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp -TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS--------TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred CcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-------cceeeeecccchhhHHHhhhhhccccccCc
Confidence 33345678999999999999999997 78999977544221 11222232221 111 1 12689
Q ss_pred eEEEEccch---h-----hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEec
Q 043503 340 DIVHSMHVL---S-----NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 340 DlV~~~~~L---~-----~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
|+|+|-... . ++.........+.-+...|+|||.+++..|-.. ... .+...+.. .|+.+.+...
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~--~~~-~~~~~l~~-~F~~v~~~Kp 164 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP--EIE-ELIYLLKR-CFSKVKIVKP 164 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST--TSH-HHHHHHHH-HHHHEEEEE-
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc--cHH-HHHHHHHh-CCeEEEEEEC
Confidence 999994411 0 111111234455556678999999988765522 222 33333333 4555554433
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00025 Score=71.22 Aligned_cols=127 Identities=16% Similarity=0.246 Sum_probs=78.5
Q ss_pred HHccCCCCCccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHh----cC---CeeEEEcccccCCCCCCce
Q 043503 268 VLSMKPLGTIRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIAS----RG---LISMHISVSQRLPFFENTL 339 (430)
Q Consensus 268 lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~----rg---~i~~~~~d~~~lpf~d~sf 339 (430)
++....+-.-++|||+|||+|.+....++.|+ +|+++ +. .+|.+.|+. +. .|.++.+..+...+| ++.
T Consensus 169 il~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAv--EA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~ 244 (517)
T KOG1500|consen 169 ILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAV--EA-SEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKV 244 (517)
T ss_pred HHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEE--eh-hHHHHHHHHHHhcCCccceEEEccCccccccCc-hhc
Confidence 33333333457899999999999998888875 67777 43 346555543 22 277788888887765 478
Q ss_pred eEEEEccchhhc-CCchhHHHHHHHHHHhccCCcEEEEe--eccccCcCcHHHHHHHHHHcCCE
Q 043503 340 DIVHSMHVLSNW-IPDSMLEFTLYDIYRLLRPGGIFWLD--RFFCFGSQLNETYVPMLDRIGFK 400 (430)
Q Consensus 340 DlV~~~~~L~~~-~~d~~l~~~L~ei~RvLrPGG~lvl~--~f~~~~~~~~~~~~~ll~~~Gfk 400 (430)
|++++- .+..+ ..+..++.++ ...|-|+|.|..+=+ +.....-.+...|.+++.++.|=
T Consensus 245 DviISE-PMG~mL~NERMLEsYl-~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFW 306 (517)
T KOG1500|consen 245 DVIISE-PMGYMLVNERMLESYL-HARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFW 306 (517)
T ss_pred cEEEec-cchhhhhhHHHHHHHH-HHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhh
Confidence 999983 22222 2343444444 455999999987521 11111112334577777777663
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.9e-05 Score=74.53 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=53.2
Q ss_pred ccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc-------CCeeEEEcccccCCCCCCceeEEEEccch
Q 043503 277 IRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR-------GLISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
..+|||||||+|.++..+++++.+|+++ |+++.+.+.++++ +.+.++.+|+...++ ..||+|+++...
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~~V~av--EiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~VvaNlPY 111 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAKKVIAI--EIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVANVPY 111 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCCcEEEE--ECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEecCCc
Confidence 3467999999999999999998889998 5557777766543 348899999877664 368999986444
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00031 Score=64.28 Aligned_cols=114 Identities=18% Similarity=0.083 Sum_probs=82.7
Q ss_pred HHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCC---EEEEEecCCChhHHHHHHhcC-CeeEEEcccccCC-----C
Q 043503 264 GIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNV---TIITTSLNLDGPFNSFIASRG-LISMHISVSQRLP-----F 334 (430)
Q Consensus 264 ~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~---~Vv~vdiD~s~~~le~a~~rg-~i~~~~~d~~~lp-----f 334 (430)
..+.+.+.+...+.--||++|.|||.++.++.++|+ .++.+ +.+..+.....++- -+.++.+|+..+. +
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~i--E~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~ 113 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAI--EYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEH 113 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEE--EeCHHHHHHHHHhCCCccccccchhhHHHHHhhc
Confidence 345555555444434469999999999999999964 34444 77777777666552 2567788776655 5
Q ss_pred CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
.+..||.|+|.-.+.+ +|-.....++.++...|++||.++.-.+.
T Consensus 114 ~gq~~D~viS~lPll~-~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 114 KGQFFDSVISGLPLLN-FPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CCCeeeeEEecccccc-CcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 6788999999877755 34445678999999999999999876544
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00033 Score=62.16 Aligned_cols=93 Identities=10% Similarity=0.086 Sum_probs=65.4
Q ss_pred ccEEEEEcCCccH-HHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCC-CCceeEEEEccchhhcCCc
Q 043503 277 IRIGLDIGGGTGT-FAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFF-ENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 277 ir~VLDIGcGtG~-~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~-d~sfDlV~~~~~L~~~~~d 354 (430)
..++||||||+|. ++..|++.|..|+++ |+++...+.+++++. .++.+|...-++. -..+|+|.+.+.- .
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~ViaI--Di~~~aV~~a~~~~~-~~v~dDlf~p~~~~y~~a~liysirpp-----~ 88 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFDVIVI--DINEKAVEKAKKLGL-NAFVDDLFNPNLEIYKNAKLIYSIRPP-----R 88 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCEEEEE--ECCHHHHHHHHHhCC-eEEECcCCCCCHHHHhcCCEEEEeCCC-----H
Confidence 3567999999995 999999999999999 555677888877765 7788886554322 3568999995433 1
Q ss_pred hhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 355 SMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
.+...+.++.+-.. .-+++.++.
T Consensus 89 -el~~~~~~la~~~~--~~~~i~~l~ 111 (134)
T PRK04148 89 -DLQPFILELAKKIN--VPLIIKPLS 111 (134)
T ss_pred -HHHHHHHHHHHHcC--CCEEEEcCC
Confidence 25556666666554 456665544
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00018 Score=68.10 Aligned_cols=135 Identities=21% Similarity=0.215 Sum_probs=81.9
Q ss_pred cEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC--------CCCCceeEEEEc-
Q 043503 278 RIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP--------FFENTLDIVHSM- 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp--------f~d~sfDlV~~~- 345 (430)
..|+|+|+-.|.|+..++++ + ..|+++|+++..+. ..+.++++|+..-+ +....+|+|++-
T Consensus 47 ~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-------~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ 119 (205)
T COG0293 47 MVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-------PGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDM 119 (205)
T ss_pred CEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-------CCceEEeeeccCccHHHHHHHHcCCCCcceEEecC
Confidence 34799999999999999988 3 44899977643321 12677888766533 334557999972
Q ss_pred --cchhhcCCc-----hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEecccccCCCchhH
Q 043503 346 --HVLSNWIPD-----SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMKLDRGVKKNE 418 (430)
Q Consensus 346 --~~L~~~~~d-----~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~~k~~~g~~~~~ 418 (430)
++-.++.-| ......+.-+.++|+|||.|++..|-. ...+.+...+.+ .|+.++.... +..+..+. |
T Consensus 120 ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg---~~~~~~l~~~~~-~F~~v~~~KP-~aSR~~S~-E 193 (205)
T COG0293 120 APNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG---EDFEDLLKALRR-LFRKVKIFKP-KASRKRSR-E 193 (205)
T ss_pred CCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC---CCHHHHHHHHHH-hhceeEEecC-ccccCCCc-e
Confidence 111222212 123345556677999999999987663 223444444443 4777764433 33333333 6
Q ss_pred HHhHhhc
Q 043503 419 WYFSAVL 425 (430)
Q Consensus 419 ~~lsa~l 425 (430)
+|+-+..
T Consensus 194 ~y~v~~~ 200 (205)
T COG0293 194 IYLVAKG 200 (205)
T ss_pred EEEEEec
Confidence 6664443
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0019 Score=64.16 Aligned_cols=102 Identities=18% Similarity=0.248 Sum_probs=72.6
Q ss_pred CCCccEEEEEcCCccHHHHHHHHc--C--CEEEEEecCCChhHH----HHHHhcCC---eeEEEcccccCC-C--CCCce
Q 043503 274 LGTIRIGLDIGGGTGTFAARMRER--N--VTIITTSLNLDGPFN----SFIASRGL---ISMHISVSQRLP-F--FENTL 339 (430)
Q Consensus 274 ~~~ir~VLDIGcGtG~~a~~La~~--g--~~Vv~vdiD~s~~~l----e~a~~rg~---i~~~~~d~~~lp-f--~d~sf 339 (430)
+..+ +||||.||.|.......+. . ..|.-. |.++.-+ +.++++|+ +.|..+|+.... + -+-..
T Consensus 134 g~pv-rIlDIAaG~GRYvlDal~~~~~~~~~i~Lr--Dys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 134 GRPV-RILDIAAGHGRYVLDALEKHPERPDSILLR--DYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred CCce-EEEEeccCCcHHHHHHHHhCCCCCceEEEE--eCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCC
Confidence 3444 4599999999887777665 2 455555 5555433 55667777 588998864422 2 23457
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
++++.+..++.+.+.+.....+..+.+++.|||+++.+.
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 999998888765555667778999999999999999865
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=2.4e-05 Score=73.76 Aligned_cols=136 Identities=19% Similarity=0.277 Sum_probs=94.3
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhH
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSML 357 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l 357 (430)
.++||+|.|.|.++..|+..--+|.++ +.|..|....+.++.--+-..+... .+-+||+|.|.+.+... .+ .
T Consensus 114 ~~lLDlGAGdGeit~~m~p~feevyAT--ElS~tMr~rL~kk~ynVl~~~ew~~---t~~k~dli~clNlLDRc-~~--p 185 (288)
T KOG3987|consen 114 VTLLDLGAGDGEITLRMAPTFEEVYAT--ELSWTMRDRLKKKNYNVLTEIEWLQ---TDVKLDLILCLNLLDRC-FD--P 185 (288)
T ss_pred eeEEeccCCCcchhhhhcchHHHHHHH--HhhHHHHHHHhhcCCceeeehhhhh---cCceeehHHHHHHHHhh-cC--h
Confidence 577999999999999998775556666 7788888888777652121222211 24469999999888653 33 6
Q ss_pred HHHHHHHHHhccC-CcEEEEe------eccccCcC----------------c---HHHHHHHHHHcCCEEEEEEeccccc
Q 043503 358 EFTLYDIYRLLRP-GGIFWLD------RFFCFGSQ----------------L---NETYVPMLDRIGFKKLRWNVGMKLD 411 (430)
Q Consensus 358 ~~~L~ei~RvLrP-GG~lvl~------~f~~~~~~----------------~---~~~~~~ll~~~Gfk~l~~~~~~k~~ 411 (430)
..+|.++.-+|+| .|.+++. ++...+.. . ...+.+++++.||.+..|+.-+...
T Consensus 186 ~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrlPYLC 265 (288)
T KOG3987|consen 186 FKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRLPYLC 265 (288)
T ss_pred HHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcCCeec
Confidence 6899999999999 7887653 22221100 0 1125668999999999999988888
Q ss_pred CCCchhHHHh
Q 043503 412 RGVKKNEWYF 421 (430)
Q Consensus 412 ~g~~~~~~~l 421 (430)
.|.-....|.
T Consensus 266 EGDm~ns~Y~ 275 (288)
T KOG3987|consen 266 EGDMHNSFYW 275 (288)
T ss_pred ccccccceEE
Confidence 7755555443
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00025 Score=73.40 Aligned_cols=90 Identities=17% Similarity=0.165 Sum_probs=64.5
Q ss_pred EEEEEcCCccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHh----cCC--eeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 279 IGLDIGGGTGTFAARMRER-N-VTIITTSLNLDGPFNSFIAS----RGL--ISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~----rg~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
+|||++||+|.++++++.. + ..|+++ |.++...+.+++ ++. +.++.+|+..+....+.||+|+... .
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~~~~V~a~--Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETGVEKVTLN--DINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred EEEECCCcccHHHHHHHHHCCCCEEEEE--eCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 5799999999999999876 4 378888 555666655544 344 5577788765431146799999942 2
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+....++....+.+++||+++++
T Consensus 135 ----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 12356778878889999999986
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00054 Score=72.02 Aligned_cols=130 Identities=16% Similarity=0.200 Sum_probs=89.1
Q ss_pred HHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHh----cCC--eeEEEcccccCCCC--
Q 043503 264 GIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIAS----RGL--ISMHISVSQRLPFF-- 335 (430)
Q Consensus 264 ~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~----rg~--i~~~~~d~~~lpf~-- 335 (430)
.++..+.........++||+=||.|+|+..++++..+|+|+ ++++.+++.|++ +|. +.|..++++++...
T Consensus 281 l~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gv--Ei~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~ 358 (432)
T COG2265 281 LYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGV--EISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW 358 (432)
T ss_pred HHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEE--ecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc
Confidence 34444444444444567999999999999999999999999 556666665544 344 78888988876632
Q ss_pred -CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 336 -ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 336 -d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
...+|.|+... |...++..+-+...-++|-..++++ |+...+.+++. .+...||++.+..
T Consensus 359 ~~~~~d~VvvDP------PR~G~~~~~lk~l~~~~p~~IvYVS---CNP~TlaRDl~-~L~~~gy~i~~v~ 419 (432)
T COG2265 359 EGYKPDVVVVDP------PRAGADREVLKQLAKLKPKRIVYVS---CNPATLARDLA-ILASTGYEIERVQ 419 (432)
T ss_pred ccCCCCEEEECC------CCCCCCHHHHHHHHhcCCCcEEEEe---CCHHHHHHHHH-HHHhCCeEEEEEE
Confidence 35789999842 2222332333444457778888886 88777767664 5777888866655
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00046 Score=70.31 Aligned_cols=99 Identities=15% Similarity=0.185 Sum_probs=68.3
Q ss_pred CccEEEEEcCCccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhc----------CCeeEEEcccccC-CCCCCceeEE
Q 043503 276 TIRIGLDIGGGTGTFAARMRER-N-VTIITTSLNLDGPFNSFIASR----------GLISMHISVSQRL-PFFENTLDIV 342 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~l-pf~d~sfDlV 342 (430)
..++||.||+|.|..+.++.+. + .+|+.+ |+++.+.+.+++. ..+.++.+|+..+ ...+++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~V--EiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMC--DIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEE--ECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 3467799999999999998886 3 467777 5567888888753 2377888886543 3345789999
Q ss_pred EEccchhhcC---Cc-hhHHHHHH-HHHHhccCCcEEEEe
Q 043503 343 HSMHVLSNWI---PD-SMLEFTLY-DIYRLLRPGGIFWLD 377 (430)
Q Consensus 343 ~~~~~L~~~~---~d-~~l~~~L~-ei~RvLrPGG~lvl~ 377 (430)
++- +...+. +. -....++. .+.+.|+|||.+++.
T Consensus 181 i~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 181 IGD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred Eec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 994 222110 00 01235676 899999999998764
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00079 Score=66.03 Aligned_cols=83 Identities=22% Similarity=0.217 Sum_probs=57.6
Q ss_pred eEEEcccccCC-CCC-----CceeEEEEccchhhcCCc-hhHHHHHHHHHHhccCCcEEEEeeccc-----cCcC-----
Q 043503 323 SMHISVSQRLP-FFE-----NTLDIVHSMHVLSNWIPD-SMLEFTLYDIYRLLRPGGIFWLDRFFC-----FGSQ----- 385 (430)
Q Consensus 323 ~~~~~d~~~lp-f~d-----~sfDlV~~~~~L~~~~~d-~~l~~~L~ei~RvLrPGG~lvl~~f~~-----~~~~----- 385 (430)
.++..|....+ +.. .+||+|++..+++...++ +.-...++++.++|||||.|++...+. .+..
T Consensus 137 ~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l 216 (256)
T PF01234_consen 137 QVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCL 216 (256)
T ss_dssp EEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE--
T ss_pred eEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccc
Confidence 35556654433 332 359999999999876644 346678999999999999999865432 1111
Q ss_pred --cHHHHHHHHHHcCCEEEEEE
Q 043503 386 --LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 386 --~~~~~~~ll~~~Gfk~l~~~ 405 (430)
..+.+.+.++++||.+..+.
T Consensus 217 ~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 217 PLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp -B-HHHHHHHHHHTTEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCEEEecc
Confidence 23578899999999999887
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00034 Score=66.22 Aligned_cols=89 Identities=21% Similarity=0.215 Sum_probs=59.0
Q ss_pred cEEEEEcCCccHHHHHHHH--cCCEEEEEecCCCh--hHHHHHHhcCC---eeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRE--RNVTIITTSLNLDG--PFNSFIASRGL---ISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~--~g~~Vv~vdiD~s~--~~le~a~~rg~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
.+|+|+.||.|.|+..++. ++..|+++|+++.+ -+.+.++.++. +..+.+|+..+.. .+.||-|++...-
T Consensus 103 e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp~-- 179 (200)
T PF02475_consen 103 EVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLPE-- 179 (200)
T ss_dssp -EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--TS--
T ss_pred eEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECChH--
Confidence 4579999999999999998 57889999665332 22344444433 7888999888764 7899999994321
Q ss_pred cCCchhHHHHHHHHHHhccCCcEE
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIF 374 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~l 374 (430)
. ...+|..+.+++++||.+
T Consensus 180 ---~--~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 180 ---S--SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp ---S--GGGGHHHHHHHEEEEEEE
T ss_pred ---H--HHHHHHHHHHHhcCCcEE
Confidence 1 335888899999999976
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00014 Score=74.75 Aligned_cols=96 Identities=25% Similarity=0.415 Sum_probs=72.9
Q ss_pred EEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHH----hc---CCeeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 280 GLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIA----SR---GLISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 280 VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~----~r---g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
++|+|||.|....+++.. +..++++ +.++-....+. .. ....++..|+...||++++||.|-+..+..|
T Consensus 114 ~~~~~~g~~~~~~~i~~f~~~~~~Gl--~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~- 190 (364)
T KOG1269|consen 114 VLDVGTGVGGPSRYIAVFKKAGVVGL--DNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCH- 190 (364)
T ss_pred ccccCcCcCchhHHHHHhccCCccCC--CcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeeccc-
Confidence 499999999999999887 5777877 44442222111 11 2244577889999999999999999888844
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
.++ ....+.|++|+++|||++...++.
T Consensus 191 ~~~--~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 191 APD--LEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred CCc--HHHHHHHHhcccCCCceEEeHHHH
Confidence 676 889999999999999999875544
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00065 Score=65.12 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=77.0
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhH--HHHHHhcCC---eeEEEccc-ccCC--
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPF--NSFIASRGL---ISMHISVS-QRLP-- 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~--le~a~~rg~---i~~~~~d~-~~lp-- 333 (430)
++.+++....+. .||||.=||.-+..+|.. +.+|+++|+|..... .+..+..|. +.++++.+ +.++
T Consensus 65 l~~li~~~~ak~---~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l 141 (237)
T KOG1663|consen 65 LQMLIRLLNAKR---TLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDEL 141 (237)
T ss_pred HHHHHHHhCCce---EEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHH
Confidence 445555555444 499999999887777766 789999988754322 234444454 88888864 3333
Q ss_pred ---CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 334 ---FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 334 ---f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
...++||+++. .+|-.. -..+..+..+++|+||.++++..++.+
T Consensus 142 ~~~~~~~tfDfaFv----DadK~n--Y~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 142 LADGESGTFDFAFV----DADKDN--YSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred HhcCCCCceeEEEE----ccchHH--HHHHHHHHHhhcccccEEEEeccccCC
Confidence 35689999998 344433 447899999999999999998766655
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00044 Score=67.79 Aligned_cols=78 Identities=19% Similarity=0.278 Sum_probs=59.8
Q ss_pred HHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc-------CCeeEEEcccccCCCCC
Q 043503 264 GIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR-------GLISMHISVSQRLPFFE 336 (430)
Q Consensus 264 ~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~~~lpf~d 336 (430)
.++++....+......||+||.|||.++..|.+.|.+|+++++ ++.|.....+| +...++++|.-..++|
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~--Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEI--DPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEec--CcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 3566666555556677899999999999999999999999955 46777777666 2267888887665533
Q ss_pred CceeEEEEc
Q 043503 337 NTLDIVHSM 345 (430)
Q Consensus 337 ~sfDlV~~~ 345 (430)
.||.++++
T Consensus 123 -~fd~cVsN 130 (315)
T KOG0820|consen 123 -RFDGCVSN 130 (315)
T ss_pred -ccceeecc
Confidence 58999984
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00088 Score=69.50 Aligned_cols=125 Identities=14% Similarity=0.067 Sum_probs=83.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----CC----eeEEEccccc-CC---CCCCceeEEEE
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----GL----ISMHISVSQR-LP---FFENTLDIVHS 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g~----i~~~~~d~~~-lp---f~d~sfDlV~~ 344 (430)
++|||+=|=||.|+.+.+..|+ +|+++ |.|...++.|+++ |. +.++++|+-. +. -...+||+|+.
T Consensus 219 krvLNlFsYTGgfSv~Aa~gGA~~vt~V--D~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 219 KRVLNLFSYTGGFSVHAALGGASEVTSV--DLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CeEEEecccCcHHHHHHHhcCCCceEEE--eccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 4569999999999999999998 89988 7778878777765 44 6788888533 22 22458999999
Q ss_pred ccch-hh-----cCCchhHHHHHHHHHHhccCCcEEEEeeccccC--cCcHHHHHHHHHHcCCEEEEE
Q 043503 345 MHVL-SN-----WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG--SQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 345 ~~~L-~~-----~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~--~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
-..- .. |.-......++....++|+|||.++++.-...- ....+.+...+...|......
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 3221 11 111123567888999999999999987522111 112344555566666554443
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0021 Score=65.44 Aligned_cols=125 Identities=16% Similarity=0.146 Sum_probs=86.1
Q ss_pred HHHccCCCCCccEEEEEcCCccHHHHHHHHcCCE-EEEEecCCCh--hHHHHHHhcCC---eeEEEcccccCCCCCCcee
Q 043503 267 QVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVT-IITTSLNLDG--PFNSFIASRGL---ISMHISVSQRLPFFENTLD 340 (430)
Q Consensus 267 ~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~-Vv~vdiD~s~--~~le~a~~rg~---i~~~~~d~~~lpf~d~sfD 340 (430)
+++.....+. +|||+=+|.|.|+..+|..|.. |+++|+|+.+ -+.+.++.++. +..+.+|+..+....+.+|
T Consensus 181 Rva~~v~~GE--~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aD 258 (341)
T COG2520 181 RVAELVKEGE--TVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVAD 258 (341)
T ss_pred HHHhhhcCCC--EEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCC
Confidence 4444444333 4799999999999999999765 8888665432 12244444443 7788999988775558899
Q ss_pred EEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC---cHHHHHHHHHHcCCE
Q 043503 341 IVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ---LNETYVPMLDRIGFK 400 (430)
Q Consensus 341 lV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~---~~~~~~~ll~~~Gfk 400 (430)
-|++...- . ...++....+.+++||.+.+.++...... ....+.....+.|++
T Consensus 259 rIim~~p~-----~--a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~ 314 (341)
T COG2520 259 RIIMGLPK-----S--AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYK 314 (341)
T ss_pred EEEeCCCC-----c--chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCc
Confidence 99995332 1 45688899999999999887665533321 335666777777764
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00069 Score=69.42 Aligned_cols=131 Identities=16% Similarity=0.147 Sum_probs=77.5
Q ss_pred HHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHh----cCC--eeEEEcccccCC---
Q 043503 263 YGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIAS----RGL--ISMHISVSQRLP--- 333 (430)
Q Consensus 263 ~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~----rg~--i~~~~~d~~~lp--- 333 (430)
..++.++..++...- .+||+-||+|+|+..+++...+|+|+ +..+.+++.|++ ++. +.|+.++++.+.
T Consensus 184 ~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gv--E~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~ 260 (352)
T PF05958_consen 184 KLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGV--EIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKAL 260 (352)
T ss_dssp HHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEE--ES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHH
T ss_pred HHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEe--eCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHH
Confidence 345566665554332 57999999999999999999999999 556777766654 344 788876654331
Q ss_pred -------------CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCE
Q 043503 334 -------------FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFK 400 (430)
Q Consensus 334 -------------f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk 400 (430)
.....+|+|+.-..-.. ... .++..+. ++.-.+|++ |....+.+++..+ . .||+
T Consensus 261 ~~~r~~~~~~~~~~~~~~~d~vilDPPR~G-~~~----~~~~~~~---~~~~ivYvS---CnP~tlaRDl~~L-~-~~y~ 327 (352)
T PF05958_consen 261 AKAREFNRLKGIDLKSFKFDAVILDPPRAG-LDE----KVIELIK---KLKRIVYVS---CNPATLARDLKIL-K-EGYK 327 (352)
T ss_dssp CCS-GGTTGGGS-GGCTTESEEEE---TT--SCH----HHHHHHH---HSSEEEEEE---S-HHHHHHHHHHH-H-CCEE
T ss_pred HhhHHHHhhhhhhhhhcCCCEEEEcCCCCC-chH----HHHHHHh---cCCeEEEEE---CCHHHHHHHHHHH-h-hcCE
Confidence 12336899988433211 221 2333332 345566675 8887777888765 3 3999
Q ss_pred EEEEE-eccc
Q 043503 401 KLRWN-VGMK 409 (430)
Q Consensus 401 ~l~~~-~~~k 409 (430)
+.+.. +++.
T Consensus 328 ~~~v~~~DmF 337 (352)
T PF05958_consen 328 LEKVQPVDMF 337 (352)
T ss_dssp EEEEEEE-SS
T ss_pred EEEEEEeecC
Confidence 88766 4444
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0024 Score=67.86 Aligned_cols=119 Identities=12% Similarity=0.204 Sum_probs=73.2
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHH----HhcCC--eeEEEcccccCC-CCCCceeEEEE---
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFI----ASRGL--ISMHISVSQRLP-FFENTLDIVHS--- 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a----~~rg~--i~~~~~d~~~lp-f~d~sfDlV~~--- 344 (430)
.+|||+++|.|.=+..+++. ...|++. |+++..++.. ..-|. +.+...|...+. ...+.||.|+.
T Consensus 115 ~~VLD~CAAPGgKTt~la~~l~~~g~lvA~--D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaP 192 (470)
T PRK11933 115 QRVLDMAAAPGSKTTQIAALMNNQGAIVAN--EYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAP 192 (470)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCC
Confidence 35699999999988888876 3478887 5555444333 33365 455666766553 33467999994
Q ss_pred -ccc--hh-------hcCCc------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcC
Q 043503 345 -MHV--LS-------NWIPD------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIG 398 (430)
Q Consensus 345 -~~~--L~-------~~~~d------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~G 398 (430)
+.. +. .|.++ .....+|..+.+.|||||+++.++-....++-.+.+..++++.+
T Consensus 193 CSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 193 CSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP 262 (470)
T ss_pred CCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence 311 11 11111 02367899999999999999887632222222334555666643
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0029 Score=64.37 Aligned_cols=90 Identities=12% Similarity=0.127 Sum_probs=64.8
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhH
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSML 357 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l 357 (430)
.++||+||++|.|+..+.++|..|+++|. .+|.......+.|..+..+..++..+.+.+|.|+|-.+- . .
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~~V~AVD~---g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve-----~--P 282 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGMFVTAVDN---GPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE-----K--P 282 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCCEEEEEec---hhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc-----C--H
Confidence 45799999999999999999999999963 455566666777888887765543236789999993222 1 4
Q ss_pred HHHHHHHHHhccCC--cEEEEe
Q 043503 358 EFTLYDIYRLLRPG--GIFWLD 377 (430)
Q Consensus 358 ~~~L~ei~RvLrPG--G~lvl~ 377 (430)
..+..-|.+-|..| ..+++.
T Consensus 283 ~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 283 ARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred HHHHHHHHHHHhcCcccEEEEE
Confidence 56667777777666 345554
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00099 Score=66.41 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=66.0
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----CC----eeEEEccccc-CC--CCCCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----GL----ISMHISVSQR-LP--FFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g~----i~~~~~d~~~-lp--f~d~sfDlV~~~ 345 (430)
++|||+=|=||.|+.+.+..|+ +|+.+ |.|..+++.++++ |. +.++..|+.. +. -..++||+|++-
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA~~v~~V--D~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGAKEVVSV--DSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTESEEEEE--ES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CceEEecCCCCHHHHHHHHCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 4569999999999999888886 67877 7788888777665 43 7888887543 22 124689999993
Q ss_pred cch---hhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 346 HVL---SNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 346 ~~L---~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
..- ..+.-......++..+.++|+|||.++++.
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 211 011111235678889999999999988753
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0016 Score=64.01 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=60.4
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCCC-ce
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFEN-TL 339 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d~-sf 339 (430)
++++..........+||+||+|.|.++..|++++..|+++.+| ..+.+..+++ +.+.++.+|+-..++++. .+
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD--~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~ 96 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEID--RRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQP 96 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeC--HHHHHHHHHhcccccceEEEeCchhcCcchhhcCC
Confidence 4444444433334567999999999999999999999999555 5666555554 458899999988887654 67
Q ss_pred eEEEEccch
Q 043503 340 DIVHSMHVL 348 (430)
Q Consensus 340 DlV~~~~~L 348 (430)
+.|+++-..
T Consensus 97 ~~vVaNlPY 105 (259)
T COG0030 97 YKVVANLPY 105 (259)
T ss_pred CEEEEcCCC
Confidence 889986443
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0044 Score=57.95 Aligned_cols=113 Identities=22% Similarity=0.330 Sum_probs=73.1
Q ss_pred EEEEEcCCccHHHHHHHHc--CCEEEEEecCCChh---HHHHHHhc-CC--eeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 279 IGLDIGGGTGTFAARMRER--NVTIITTSLNLDGP---FNSFIASR-GL--ISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~---~le~a~~r-g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
+++|||+|.|-=+..++-. ..+++.+ |.... +++.+... |+ +.++.+.++. +....+||+|++ +.+..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~Lv--Es~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~a-RAv~~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLV--ESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTA-RAVAP 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEE--ESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEE-ESSSS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEE--eCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEe-ehhcC
Confidence 5799999999666655544 6788887 54443 34443333 44 7888888877 555789999999 44422
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHH---HHHHHHHcCCEEEEEE
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNET---YVPMLDRIGFKKLRWN 405 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~---~~~ll~~~Gfk~l~~~ 405 (430)
+..++.-+...+++||.+++. .+....++ ....+...|.+.....
T Consensus 127 ------l~~l~~~~~~~l~~~G~~l~~----KG~~~~~El~~~~~~~~~~~~~~~~v~ 174 (184)
T PF02527_consen 127 ------LDKLLELARPLLKPGGRLLAY----KGPDAEEELEEAKKAWKKLGLKVLSVP 174 (184)
T ss_dssp ------HHHHHHHHGGGEEEEEEEEEE----ESS--HHHHHTHHHHHHCCCEEEEEEE
T ss_pred ------HHHHHHHHHHhcCCCCEEEEE----cCCChHHHHHHHHhHHHHhCCEEeeec
Confidence 678899999999999998874 33333333 4445556666655543
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0027 Score=62.56 Aligned_cols=114 Identities=11% Similarity=0.024 Sum_probs=73.5
Q ss_pred CCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----------CCeeEEEcccccCCCCCCceeEEE
Q 043503 274 LGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----------GLISMHISVSQRLPFFENTLDIVH 343 (430)
Q Consensus 274 ~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~lpf~d~sfDlV~ 343 (430)
....++||=||+|.|..+.++.+...+|+-+|+ ++.+++.+++. ..+.++.. ..+ -..++||+|+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeI--D~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVII 144 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQA--DEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLII 144 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEEC--CHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEE
Confidence 345678899999999999999998668888854 57777777662 22444431 111 1236899999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCCcEEEEee--ccccCcCcHHHHHHHHHHcCCEEE
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR--FFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~--f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
.-. + . ...+.+.+.|+|+|||.++.-. .+. ..+....+.+.+++ .|+.+
T Consensus 145 vDs-~----~---~~~fy~~~~~~L~~~Gi~v~Qs~sp~~-~~~~~~~i~~~l~~-~F~~v 195 (262)
T PRK00536 145 CLQ-E----P---DIHKIDGLKRMLKEDGVFISVAKHPLL-EHVSMQNALKNMGD-FFSIA 195 (262)
T ss_pred EcC-C----C---ChHHHHHHHHhcCCCcEEEECCCCccc-CHHHHHHHHHHHHh-hCCce
Confidence 842 2 2 2457789999999999998732 111 11222344444555 57744
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0051 Score=60.90 Aligned_cols=124 Identities=19% Similarity=0.067 Sum_probs=74.4
Q ss_pred CCCCCccEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChhHHHHHHhc--CCeeEE----Eccc--ccCCCCCCcee
Q 043503 272 KPLGTIRIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGPFNSFIASR--GLISMH----ISVS--QRLPFFENTLD 340 (430)
Q Consensus 272 ~p~~~ir~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~~le~a~~r--g~i~~~----~~d~--~~lpf~d~sfD 340 (430)
.+.-..++|||+|+|+|+-...+.+. + .+++.+ |.++.|++.++.- ...... .... +..++ ...|
T Consensus 29 ~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~v--d~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~D 104 (274)
T PF09243_consen 29 LPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCV--DRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF--PPDD 104 (274)
T ss_pred CcCCCCceEEEecCChHHHHHHHHHHhcCceeeeee--cCCHHHHHHHHHHHhcccccccchhhhhhhcccccC--CCCc
Confidence 34445567899999999866665554 2 355555 8888888765431 111100 0111 11222 2349
Q ss_pred EEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc-cCcCcHHHHHHHHHHcCCEEE
Q 043503 341 IVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC-FGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 341 lV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~-~~~~~~~~~~~ll~~~Gfk~l 402 (430)
+|+++++|....+ .....++..+.+.+.+ .++|.+.-. .+........+.+.+.|+.++
T Consensus 105 Lvi~s~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 105 LVIASYVLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVV 164 (274)
T ss_pred EEEEehhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceE
Confidence 9999999976444 6678888888888776 777755332 112233456666777777655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0066 Score=59.19 Aligned_cols=128 Identities=15% Similarity=0.124 Sum_probs=81.4
Q ss_pred CccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----------CCeeEEEcccccCC-CCCC-ceeE
Q 043503 276 TIRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----------GLISMHISVSQRLP-FFEN-TLDI 341 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~lp-f~d~-sfDl 341 (430)
..++||=||.|.|..+..+.+.. .+|+.+ |+++.+.+.+++- ..+.++.+|+..+- -..+ +||+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~V--EiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVV--EIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEE--ES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEE--ecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 45677999999999999999874 577777 5557777776542 24788888875432 2234 8999
Q ss_pred EEEccchhhcCCc--hhHHHHHHHHHHhccCCcEEEEeecc-ccCcCcHHHHHHHHHHcCCEEEEEEe
Q 043503 342 VHSMHVLSNWIPD--SMLEFTLYDIYRLLRPGGIFWLDRFF-CFGSQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 342 V~~~~~L~~~~~d--~~l~~~L~ei~RvLrPGG~lvl~~f~-~~~~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
|+.- ......+. -....+++.+.+.|+|||.+++..-. .........+.+.++.....+.....
T Consensus 154 Ii~D-~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~ 220 (246)
T PF01564_consen 154 IIVD-LTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTA 220 (246)
T ss_dssp EEEE-SSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred EEEe-CCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEE
Confidence 9983 22111111 11357899999999999999875311 11222345566677777665444443
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0029 Score=63.00 Aligned_cols=100 Identities=18% Similarity=0.141 Sum_probs=70.4
Q ss_pred CCccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----------CCeeEEEcccccC-CCCCCceeE
Q 043503 275 GTIRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----------GLISMHISVSQRL-PFFENTLDI 341 (430)
Q Consensus 275 ~~ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~l-pf~d~sfDl 341 (430)
+..++||-||.|.|..+..+.+.. .+++.+ |+++..++.+++. ..+.++..|...+ .-...+||+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~V--EID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMV--EIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEE--EcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 334688999999999999999984 567777 5557888888765 1256777775443 223348999
Q ss_pred EEEccchhhcCC--chhHHHHHHHHHHhccCCcEEEEe
Q 043503 342 VHSMHVLSNWIP--DSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 342 V~~~~~L~~~~~--d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
|++- +...--+ .-....+++.+.|.|+++|.++.-
T Consensus 153 Ii~D-~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVD-STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEc-CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 9993 2222111 001367999999999999999886
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0012 Score=61.53 Aligned_cols=98 Identities=16% Similarity=0.142 Sum_probs=63.0
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C---CeeEEEccc-ccCC---CCCCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G---LISMHISVS-QRLP---FFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~-~~lp---f~d~sfDlV~~~ 345 (430)
.++||+-||+|.++.+.+.||+ .|+.+ |.+......++++ + .+.++..|+ ..++ ....+||+|+.-
T Consensus 44 ~~vLDLFaGSGalGlEALSRGA~~v~fV--E~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 44 ARVLDLFAGSGALGLEALSRGAKSVVFV--EKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp -EEEETT-TTSHHHHHHHHTT-SEEEEE--ES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CeEEEcCCccCccHHHHHhcCCCeEEEE--ECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 3469999999999999999985 77777 5555555544443 3 266777774 2332 246899999996
Q ss_pred cchhhcCCchhHHHHHHHHH--HhccCCcEEEEeecc
Q 043503 346 HVLSNWIPDSMLEFTLYDIY--RLLRPGGIFWLDRFF 380 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~--RvLrPGG~lvl~~f~ 380 (430)
..... ......++..+. ..|+++|.+++.+..
T Consensus 122 PPY~~---~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 122 PPYAK---GLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp -STTS---CHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred CCccc---chHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 55522 211356777776 799999999997644
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0017 Score=61.69 Aligned_cols=112 Identities=15% Similarity=0.230 Sum_probs=59.7
Q ss_pred HHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCE-EEEEecCCChhHHHHHH-----------hcCC----eeEEE
Q 043503 264 GIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVT-IITTSLNLDGPFNSFIA-----------SRGL----ISMHI 326 (430)
Q Consensus 264 ~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~-Vv~vdiD~s~~~le~a~-----------~rg~----i~~~~ 326 (430)
.+..+++....+.-.+.+|+|||.|......+.. +++ .+|+.+. +...+.|. ..|. +.+..
T Consensus 30 ~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~--~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~ 107 (205)
T PF08123_consen 30 FVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEIL--PELHDLAEELLEELKKRMKHYGKRPGKVELIH 107 (205)
T ss_dssp HHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-S--HHHHHHHHHHHHHHHHHHHHCTB---EEEEEC
T ss_pred HHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEec--hHHHHHHHHHHHHHHHHHHHhhcccccceeec
Confidence 3555555544444467899999999876666654 665 8888554 33222221 1122 66677
Q ss_pred cccccCCCCC---CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 327 SVSQRLPFFE---NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 327 ~d~~~lpf~d---~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
+|+...++.. ...|+|++++.. .++ .+...|.+...-||+|-+++-..-++
T Consensus 108 gdfl~~~~~~~~~s~AdvVf~Nn~~---F~~-~l~~~L~~~~~~lk~G~~IIs~~~~~ 161 (205)
T PF08123_consen 108 GDFLDPDFVKDIWSDADVVFVNNTC---FDP-DLNLALAELLLELKPGARIISTKPFC 161 (205)
T ss_dssp S-TTTHHHHHHHGHC-SEEEE--TT---T-H-HHHHHHHHHHTTS-TT-EEEESS-SS
T ss_pred cCccccHhHhhhhcCCCEEEEeccc---cCH-HHHHHHHHHHhcCCCCCEEEECCCcC
Confidence 7765433111 346999997665 122 36667788889999999887665554
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0024 Score=63.99 Aligned_cols=79 Identities=19% Similarity=0.151 Sum_probs=56.3
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCC--CC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLP--FF 335 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lp--f~ 335 (430)
+++++..+......++||++||.|..+..+++. +.+|+++ |.++.+++.++++ +.+.++++++..+. .+
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~Vigi--D~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAI--DRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEE--cCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 344444333222346799999999999999988 3789988 6668888888765 35888888877654 22
Q ss_pred CC--ceeEEEEc
Q 043503 336 EN--TLDIVHSM 345 (430)
Q Consensus 336 d~--sfDlV~~~ 345 (430)
++ ++|.|++.
T Consensus 86 ~~~~~vDgIl~D 97 (296)
T PRK00050 86 EGLGKVDGILLD 97 (296)
T ss_pred cCCCccCEEEEC
Confidence 22 79999984
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.015 Score=59.74 Aligned_cols=145 Identities=17% Similarity=0.189 Sum_probs=88.4
Q ss_pred eeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc----CCEEEEEecCCChhHHH----HHHhcCC--ee
Q 043503 254 WLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER----NVTIITTSLNLDGPFNS----FIASRGL--IS 323 (430)
Q Consensus 254 ~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~----g~~Vv~vdiD~s~~~le----~a~~rg~--i~ 323 (430)
|+..+...+.....++...++.. |||+.++.|.=+..+++. +..|+++ |.++.-+. .++.-|. +.
T Consensus 137 ~~~vQd~sS~l~a~~L~p~pge~---VlD~cAAPGGKTthla~~~~~~~~iV~A~--D~~~~Rl~~l~~nl~RlG~~nv~ 211 (355)
T COG0144 137 LIYVQDEASQLPALVLDPKPGER---VLDLCAAPGGKTTHLAELMENEGAIVVAV--DVSPKRLKRLRENLKRLGVRNVI 211 (355)
T ss_pred EEEEcCHHHHHHHHHcCCCCcCE---EEEECCCCCCHHHHHHHhcCCCCceEEEE--cCCHHHHHHHHHHHHHcCCCceE
Confidence 34456656666667777666644 599999999777777766 4566888 55554333 3333365 45
Q ss_pred EEEcccccCC--CC-CCceeEEEEc------cchhh-------cCCc------hhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 324 MHISVSQRLP--FF-ENTLDIVHSM------HVLSN-------WIPD------SMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 324 ~~~~d~~~lp--f~-d~sfDlV~~~------~~L~~-------~~~d------~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
....|...++ .+ .+.||.|+.- .+++. +.+. .....+|....++|||||.++.++=..
T Consensus 212 ~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 212 VVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred EEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 6667766654 22 2359999981 22211 1111 134568999999999999999986222
Q ss_pred cCcCcHHHHHHHHHHc-CCEEEE
Q 043503 382 FGSQLNETYVPMLDRI-GFKKLR 403 (430)
Q Consensus 382 ~~~~~~~~~~~ll~~~-Gfk~l~ 403 (430)
..++-...+..++++. +|+...
T Consensus 292 ~~eENE~vV~~~L~~~~~~~~~~ 314 (355)
T COG0144 292 TPEENEEVVERFLERHPDFELEP 314 (355)
T ss_pred chhcCHHHHHHHHHhCCCceeec
Confidence 2233334566666664 565554
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0055 Score=64.54 Aligned_cols=99 Identities=19% Similarity=0.275 Sum_probs=77.6
Q ss_pred EEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhcC-----CeeEEEcccccCCCCCCceeEEEEccchhhcC
Q 043503 279 IGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASRG-----LISMHISVSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~rg-----~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
++|-+|||.-.+...+-+.|. .|+.+ |.|...++....++ ...+...|...+.|++.+||+|+.-..+++..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~i--D~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNI--DSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceec--cccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 459999999999999988875 45554 77777666655443 37788889999999999999999988887655
Q ss_pred Cch-------hHHHHHHHHHHhccCCcEEEEeec
Q 043503 353 PDS-------MLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 353 ~d~-------~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
.++ .....+.++.|+|+|||+++...+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 432 234578999999999999877665
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.034 Score=53.43 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=79.4
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCCh----hHHHHHHhcCCeeEEEcccccCC---CCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDG----PFNSFIASRGLISMHISVSQRLP---FFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~----~~le~a~~rg~i~~~~~d~~~lp---f~d~sfDlV~~~~~ 347 (430)
..||-+|..+|+....+++- ...|+++ +.++ ..+..|++|.++--+..|+..-. .--+.+|+|++ .+
T Consensus 75 skVLYLGAasGTTVSHvSDIvg~~G~VYaV--Efs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~-DV 151 (229)
T PF01269_consen 75 SKVLYLGAASGTTVSHVSDIVGPDGVVYAV--EFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQ-DV 151 (229)
T ss_dssp -EEEEETTTTSHHHHHHHHHHTTTSEEEEE--ESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEE-E-
T ss_pred CEEEEecccCCCccchhhhccCCCCcEEEE--EecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEe-cC
Confidence 45699999999999999887 4588888 6665 45677888877655666664311 12348999999 33
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeecc-ccCc-----CcHHHHHHHHHHcCCEEEEEE
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF-CFGS-----QLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~-~~~~-----~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
- .++ ..+-++.++...||+||.++++--. |-+. ..+..-.+.+++.||++++..
T Consensus 152 a---Qp~-Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i 211 (229)
T PF01269_consen 152 A---QPD-QARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQI 211 (229)
T ss_dssp S---STT-HHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred C---ChH-HHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEe
Confidence 3 344 4778899999999999999885211 1111 122333455677899987655
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0053 Score=61.27 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=58.9
Q ss_pred CccEEEEEcCCccHHHHHHHH---------cCCEEEEEecCCChhHHHHHHhc----CC----eeEEEcccccCC-CC-C
Q 043503 276 TIRIGLDIGGGTGTFAARMRE---------RNVTIITTSLNLDGPFNSFIASR----GL----ISMHISVSQRLP-FF-E 336 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~---------~g~~Vv~vdiD~s~~~le~a~~r----g~----i~~~~~d~~~lp-f~-d 336 (430)
...+|+|.+||+|.|...+.+ ...+++|.|+| +.+...++.+ |. ..+..+|.-..+ .. .
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~--~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEID--PEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES---HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCc--HHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 334579999999999888876 36788888555 5544444322 22 346677653333 22 5
Q ss_pred CceeEEEEccchhhc--CC----------------chhHHHHHHHHHHhccCCcEEEE
Q 043503 337 NTLDIVHSMHVLSNW--IP----------------DSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~--~~----------------d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
..||+|+++..+... .. ...-..++..+.+.|++||++.+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence 789999997555432 10 00112478889999999998644
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.012 Score=58.99 Aligned_cols=145 Identities=19% Similarity=0.195 Sum_probs=87.9
Q ss_pred hHHHHHHHccCCC-----CCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHH---HHHH----hcCC--------
Q 043503 262 DYGIDQVLSMKPL-----GTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFN---SFIA----SRGL-------- 321 (430)
Q Consensus 262 ~~~id~lL~~~p~-----~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~l---e~a~----~rg~-------- 321 (430)
...|+++-...|. .++ .+|--|||.|+++..++..|.++-|- +.|.-|+ .++. ..+.
T Consensus 132 kpii~~l~~lfp~~~~~r~ki-~iLvPGaGlGRLa~dla~~G~~~qGN--EfSy~Mli~S~FiLN~~~~~nq~~IYPfIh 208 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKI-RILVPGAGLGRLAYDLACLGFKCQGN--EFSYFMLICSSFILNYCKQENQFTIYPFIH 208 (369)
T ss_pred hhHHHHHHhhCCCccccccCc-eEEecCCCchhHHHHHHHhccccccc--HHHHHHHHHHHHHHHhhccCCcEEEEeeee
Confidence 3445666555543 233 45999999999999999998776654 4444443 2222 1111
Q ss_pred -------------------------------eeEEEcccccCC---CCCCceeEEEEccchhhcCCchhHHHHHHHHHHh
Q 043503 322 -------------------------------ISMHISVSQRLP---FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRL 367 (430)
Q Consensus 322 -------------------------------i~~~~~d~~~lp---f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~Rv 367 (430)
..+..||+-+.- -..++||+|+..+.+.- ....-.++..|..+
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT---a~NileYi~tI~~i 285 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT---AHNILEYIDTIYKI 285 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec---hHHHHHHHHHHHHh
Confidence 111122221111 01236999998755532 22477899999999
Q ss_pred ccCCcEEE-----EeeccccCc---C-----cHHHHHHHHHHcCCEEEEEEecccccCC
Q 043503 368 LRPGGIFW-----LDRFFCFGS---Q-----LNETYVPMLDRIGFKKLRWNVGMKLDRG 413 (430)
Q Consensus 368 LrPGG~lv-----l~~f~~~~~---~-----~~~~~~~ll~~~Gfk~l~~~~~~k~~~g 413 (430)
|+|||+++ +.||-.... + ..+++..+....||++++.. +.....+
T Consensus 286 Lk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~-~Idt~Y~ 343 (369)
T KOG2798|consen 286 LKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER-GIDTTYG 343 (369)
T ss_pred ccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee-eeecccC
Confidence 99999985 444443221 1 24678889999999999876 4443333
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0062 Score=67.95 Aligned_cols=98 Identities=16% Similarity=0.047 Sum_probs=65.4
Q ss_pred cEEEEEcCCccHHHHHHHHc--------------------------------------------CCEEEEEecCCChhHH
Q 043503 278 RIGLDIGGGTGTFAARMRER--------------------------------------------NVTIITTSLNLDGPFN 313 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--------------------------------------------g~~Vv~vdiD~s~~~l 313 (430)
..++|.+||+|++.++.+.. ..+++|+ |+++.++
T Consensus 192 ~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~--Did~~av 269 (702)
T PRK11783 192 TPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGS--DIDPRVI 269 (702)
T ss_pred CeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEE--ECCHHHH
Confidence 45799999999999887652 1257787 5567777
Q ss_pred HHHHhc----CC---eeEEEcccccCCCC--CCceeEEEEccchhhcCC-chhHHHHHHHHHHhc---cCCcEEEEe
Q 043503 314 SFIASR----GL---ISMHISVSQRLPFF--ENTLDIVHSMHVLSNWIP-DSMLEFTLYDIYRLL---RPGGIFWLD 377 (430)
Q Consensus 314 e~a~~r----g~---i~~~~~d~~~lpf~--d~sfDlV~~~~~L~~~~~-d~~l~~~L~ei~RvL---rPGG~lvl~ 377 (430)
+.|+++ |. +.+..+|+.+++.+ .++||+|+++.....-+. ...+..+..++.+.+ .+|+.+++.
T Consensus 270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ll 346 (702)
T PRK11783 270 QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALF 346 (702)
T ss_pred HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 766654 54 78889999887644 357999999866533222 223444444444444 489888764
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.012 Score=56.43 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=79.7
Q ss_pred cEEEEEcCCccHHHHHHH--HcCCEEEEEecCCC-hhHHHHHHhc-CC--eeEEEcccccCCCCCCc-eeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMR--ERNVTIITTSLNLD-GPFNSFIASR-GL--ISMHISVSQRLPFFENT-LDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La--~~g~~Vv~vdiD~s-~~~le~a~~r-g~--i~~~~~d~~~lpf~d~s-fDlV~~~~~L~~ 350 (430)
.+++|||+|.|-=+..++ ..+.+|+-+|...- ..+++.+... |+ +.++++.++.+.- +.. ||+|.+ +.+..
T Consensus 69 ~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~-~~~~~D~vts-RAva~ 146 (215)
T COG0357 69 KRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ-EKKQYDVVTS-RAVAS 146 (215)
T ss_pred CEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc-ccccCcEEEe-ehccc
Confidence 567999999997776665 33666776643321 2456655544 44 7888888888762 223 999999 44422
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEe
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
+..++.=+...+++||.++...+.... +............|+.+.+...
T Consensus 147 ------L~~l~e~~~pllk~~g~~~~~k~~~~~-~e~~e~~~a~~~~~~~~~~~~~ 195 (215)
T COG0357 147 ------LNVLLELCLPLLKVGGGFLAYKGLAGK-DELPEAEKAILPLGGQVEKVFS 195 (215)
T ss_pred ------hHHHHHHHHHhcccCCcchhhhHHhhh-hhHHHHHHHHHhhcCcEEEEEE
Confidence 667788888999999998765444322 2334566677778888776553
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.017 Score=59.52 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=67.9
Q ss_pred EEEEEcCCccHHHHHHHHcCC-----------------------------------------EEEEEecCCChhHHHHHH
Q 043503 279 IGLDIGGGTGTFAARMRERNV-----------------------------------------TIITTSLNLDGPFNSFIA 317 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~-----------------------------------------~Vv~vdiD~s~~~le~a~ 317 (430)
..+|-=||+|+++++.|..+. .++|+ |+++.+++.|+
T Consensus 194 pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~--Did~r~i~~Ak 271 (381)
T COG0116 194 PLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGS--DIDPRHIEGAK 271 (381)
T ss_pred ccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEe--cCCHHHHHHHH
Confidence 349999999999999887753 25677 56678887776
Q ss_pred hc----CC---eeEEEcccccCCCCCCceeEEEEccchhhcCCc-hhHH----HHHHHHHHhccCCcEEEEee
Q 043503 318 SR----GL---ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPD-SMLE----FTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 318 ~r----g~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d-~~l~----~~L~ei~RvLrPGG~lvl~~ 378 (430)
.+ |+ |.|.++|+..++-+-+.+|+|+|+....-=+.+ .... .+...+.+.++--+.++++.
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 55 44 999999999988443789999997554322222 1222 34445556667667777753
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0067 Score=62.76 Aligned_cols=90 Identities=8% Similarity=0.066 Sum_probs=64.8
Q ss_pred EEEEEcCCccHHHHHHHHc--C-CEEEEEecCCChhHHHHHHh----cCC--eeEEEcccccCC-CCCCceeEEEEccch
Q 043503 279 IGLDIGGGTGTFAARMRER--N-VTIITTSLNLDGPFNSFIAS----RGL--ISMHISVSQRLP-FFENTLDIVHSMHVL 348 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~--g-~~Vv~vdiD~s~~~le~a~~----rg~--i~~~~~d~~~lp-f~d~sfDlV~~~~~L 348 (430)
+|||+.||+|..+++++.+ | ..|+++ |+++...+.+++ ++. +.++..|+..+- .....||+|..-. +
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~n--D~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREVFAN--DINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEEEEE--eCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 4699999999999999987 4 477887 555555555443 343 667777776542 1235799999843 3
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
. . ...++..+.+.+++||+++++
T Consensus 124 G--s----~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 G--T----PAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C--C----cHHHHHHHHHhcccCCEEEEE
Confidence 1 2 346899999999999999986
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.004 Score=57.13 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=44.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCC--CCCCc-eeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLP--FFENT-LDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lp--f~d~s-fDlV~~~~ 346 (430)
++|+|+.||.|..++.+|+...+|+++|+ ++..++.++.+ |. +.++++|+..+. +.... +|+|+++.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidi--d~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDI--DPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES---HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEEC--CHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 36899999999999999999989999955 46666666554 53 899999975542 22222 89999853
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.014 Score=54.57 Aligned_cols=99 Identities=16% Similarity=0.218 Sum_probs=62.8
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc-------CCeeEEEcccccC-CCCCC--ceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR-------GLISMHISVSQRL-PFFEN--TLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~~~l-pf~d~--sfDlV~~~~ 346 (430)
.++||+=+|+|.++.+.+.||+ .++.+ |.+......++++ +...++..|+... +-... +||+|+.-.
T Consensus 45 ~~~LDlFAGSGaLGlEAlSRGA~~~~~v--E~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 45 ARVLDLFAGSGALGLEALSRGAARVVFV--EKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CEEEEecCCccHhHHHHHhCCCceEEEE--ecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 4569999999999999999975 56666 4445544444443 3467777776533 21222 499999976
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.+..-.-+........+-...|+|||.+++.+
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 66321111012222223567799999999864
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.014 Score=56.39 Aligned_cols=121 Identities=19% Similarity=0.246 Sum_probs=76.9
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHH-HHhcCC-eeEEEcccccCC---CCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSF-IASRGL-ISMHISVSQRLP---FFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~-a~~rg~-i~~~~~d~~~lp---f~d~sfDlV~~~~~L~~~ 351 (430)
+++||+|.-||.|+..+.++|+ .|+++|+-. ..+.. .+..-. +.+...+++.+. +. +..|+++|--.+
T Consensus 81 kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~--~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSF--- 154 (245)
T COG1189 81 KVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGY--GQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSF--- 154 (245)
T ss_pred CEEEEecCCCccHHHHHHHcCCcEEEEEEccC--CccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeeh---
Confidence 5689999999999999999965 778885543 22222 222222 333334555443 22 367999996444
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEee--ccc------------cCcC----cHHHHHHHHHHcCCEEEEEEec
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDR--FFC------------FGSQ----LNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~--f~~------------~~~~----~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
+ .+..+|..+..+++|||.++.-- -|. .++. ....+...+...||.+......
T Consensus 155 I---SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~S 225 (245)
T COG1189 155 I---SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKS 225 (245)
T ss_pred h---hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEcc
Confidence 3 26789999999999999876420 000 0011 1234667778889998876543
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.024 Score=57.45 Aligned_cols=108 Identities=11% Similarity=0.121 Sum_probs=68.7
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc------CCEEEEEecCCChhHHHHHHhc----CC--ee--EEEcccc
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER------NVTIITTSLNLDGPFNSFIASR----GL--IS--MHISVSQ 330 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~------g~~Vv~vdiD~s~~~le~a~~r----g~--i~--~~~~d~~ 330 (430)
...+...++.+. +++|+|||+|.=+..|.+. .++.+.+ |+|..+++.+.++ .. +. -+++|..
T Consensus 67 ~~~Ia~~i~~~~--~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~pl--DIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~ 142 (319)
T TIGR03439 67 SSDIAASIPSGS--MLVELGSGNLRKVGILLEALERQKKSVDYYAL--DVSRSELQRTLAELPLGNFSHVRCAGLLGTYD 142 (319)
T ss_pred HHHHHHhcCCCC--EEEEECCCchHHHHHHHHHHHhcCCCceEEEE--ECCHHHHHHHHHhhhhccCCCeEEEEEEecHH
Confidence 444555555433 4699999999765554443 3556666 8888888776543 11 33 3566553
Q ss_pred c----CCC--CCCceeEEEEc-cchhhcCCchhHHHHHHHHHH-hccCCcEEEEe
Q 043503 331 R----LPF--FENTLDIVHSM-HVLSNWIPDSMLEFTLYDIYR-LLRPGGIFWLD 377 (430)
Q Consensus 331 ~----lpf--~d~sfDlV~~~-~~L~~~~~d~~l~~~L~ei~R-vLrPGG~lvl~ 377 (430)
. ++- ......+|+.. ..+.++.++ ....+|+++.+ .|+|||.|++.
T Consensus 143 ~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~-ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 143 DGLAWLKRPENRSRPTTILWLGSSIGNFSRP-EAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred HHHhhcccccccCCccEEEEeCccccCCCHH-HHHHHHHHHHHhhCCCCCEEEEe
Confidence 3 221 12335666654 567775554 47789999999 99999999884
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.016 Score=62.45 Aligned_cols=70 Identities=17% Similarity=0.130 Sum_probs=42.6
Q ss_pred cEEEEEcCCccHHHHHHHHcC----------CEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccC-----CCCC
Q 043503 278 RIGLDIGGGTGTFAARMRERN----------VTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRL-----PFFE 336 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g----------~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~l-----pf~d 336 (430)
.+|||.|||+|.|...++++. ..++++ |+++..++.++.+ + .+.+...|.... .-..
T Consensus 33 ~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~--DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 33 TKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFA--DIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeee--chhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 467999999999998887651 345666 5556666555433 2 133443432211 1112
Q ss_pred CceeEEEEccchh
Q 043503 337 NTLDIVHSMHVLS 349 (430)
Q Consensus 337 ~sfDlV~~~~~L~ 349 (430)
+.||+|+++....
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 5799999976554
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.011 Score=57.91 Aligned_cols=93 Identities=17% Similarity=0.216 Sum_probs=63.8
Q ss_pred CccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCC---CceeEEEEccch
Q 043503 276 TIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFE---NTLDIVHSMHVL 348 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d---~sfDlV~~~~~L 348 (430)
....|||+|+|+|.++..|++.+..++++++ ++.+.+...++ +.+.++.+|+..+..++ +....|+++-..
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~--d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEI--DPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEES--SHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEEEEETG
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecC--cHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEEEEEecc
Confidence 3456799999999999999999999999855 46777766663 55899999998887654 456677775433
Q ss_pred hhcCCchhHHHHHHHHHHhccC---CcEEEE
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRP---GGIFWL 376 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrP---GG~lvl 376 (430)
+ + -..++..+...-+. ...+++
T Consensus 108 -~-i----s~~il~~ll~~~~~g~~~~~l~v 132 (262)
T PF00398_consen 108 -N-I----SSPILRKLLELYRFGRVRMVLMV 132 (262)
T ss_dssp -T-G----HHHHHHHHHHHGGGCEEEEEEEE
T ss_pred -c-c----hHHHHHHHhhcccccccceEEEE
Confidence 2 2 33455555554343 244444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.039 Score=51.99 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=68.9
Q ss_pred EEEEEcCCccHHHHHHHHc-CC--EEEEEecCCC--------hhHHHHHHhcCC--eeEEEcccccCCCCCCceeEEEE-
Q 043503 279 IGLDIGGGTGTFAARMRER-NV--TIITTSLNLD--------GPFNSFIASRGL--ISMHISVSQRLPFFENTLDIVHS- 344 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~-g~--~Vv~vdiD~s--------~~~le~a~~rg~--i~~~~~d~~~lpf~d~sfDlV~~- 344 (430)
+|+|+=.|.|.|+..++.. |. .|+++-.+-. +.+...+++... +..+-.+.-.+. +.+..|++..
T Consensus 51 tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~~~~~ 129 (238)
T COG4798 51 TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDLVPTA 129 (238)
T ss_pred EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccccccc
Confidence 4699999999999998876 32 4555422211 111122222211 222222222222 2333444443
Q ss_pred -------ccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC-cC----------cHHHHHHHHHHcCCEEEEEE
Q 043503 345 -------MHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG-SQ----------LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 345 -------~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~-~~----------~~~~~~~ll~~~Gfk~l~~~ 405 (430)
...+ ......++..++++.|||||.+.+.+..... .. .........+..||+.....
T Consensus 130 ~~yhdmh~k~i----~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS 204 (238)
T COG4798 130 QNYHDMHNKNI----HPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAES 204 (238)
T ss_pred hhhhhhhcccc----CcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeee
Confidence 2222 2335788999999999999998876554322 21 12346778889999977543
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.092 Score=49.93 Aligned_cols=115 Identities=14% Similarity=0.085 Sum_probs=73.4
Q ss_pred EEEEcCCccHHHHHHHHcCC--EEEEEecCCChhHHHHHHhc----CC---eeEEEccc-ccCCCCCCceeEEEEccchh
Q 043503 280 GLDIGGGTGTFAARMRERNV--TIITTSLNLDGPFNSFIASR----GL---ISMHISVS-QRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 280 VLDIGcGtG~~a~~La~~g~--~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~-~~lpf~d~sfDlV~~~~~L~ 349 (430)
|.||||--|.++.+|.++|. +++++ |+++.-++.|+++ |+ +.+..+|. +.++ +.+..|.|+...+-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~--DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAV--DINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEE--ESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEE--eCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCH
Confidence 58999999999999999975 67777 5556556555543 43 88888884 5554 223368877744332
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEec
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
. ....+|.+....++....|++.- ......+...+.+.||.+++....
T Consensus 78 ~-----lI~~ILe~~~~~~~~~~~lILqP-----~~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 78 E-----LIIEILEAGPEKLSSAKRLILQP-----NTHAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp H-----HHHHHHHHTGGGGTT--EEEEEE-----SS-HHHHHHHHHHTTEEEEEEEEE
T ss_pred H-----HHHHHHHhhHHHhccCCeEEEeC-----CCChHHHHHHHHHCCCEEEEeEEE
Confidence 2 36678888888887777777741 223567888999999998876543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.017 Score=54.14 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=55.1
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccC--------CCCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRL--------PFFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l--------pf~d~sfDlV~~~~ 346 (430)
.+|||+||-.|+|+.-..++ +..|.|+|+-. ...-+|...+...|..+- ..++...|+|++-.
T Consensus 71 ~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDM 144 (232)
T KOG4589|consen 71 DTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH------IEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDM 144 (232)
T ss_pred CEEEEccCCCChHHHHHHHhhCCCceEEEEeeee------ccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEecc
Confidence 34699999999999998888 45677776521 111223322222232220 13578899999832
Q ss_pred c--------hhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 347 V--------LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 347 ~--------L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
. ..|...-+....++.-....++|+|.|+.--+.
T Consensus 145 apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232)
T KOG4589|consen 145 APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232)
T ss_pred CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence 1 112111112233444455677899999886544
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.012 Score=52.96 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=55.1
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcC----C-eeEEEcccccCCCCCCc
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRG----L-ISMHISVSQRLPFFENT 338 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg----~-i~~~~~d~~~lpf~d~s 338 (430)
|..-..-+.++.+ +|+|||.|-+....+-- .-.|+|+|+ ++..++.+..+. + +.+.+.+...+-+..+.
T Consensus 40 Ih~TygdiEgkkl---~DLgcgcGmLs~a~sm~~~e~vlGfDI--dpeALEIf~rNaeEfEvqidlLqcdildle~~~g~ 114 (185)
T KOG3420|consen 40 IHNTYGDIEGKKL---KDLGCGCGMLSIAFSMPKNESVLGFDI--DPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGI 114 (185)
T ss_pred HHhhhccccCcch---hhhcCchhhhHHHhhcCCCceEEeeec--CHHHHHHHhhchHHhhhhhheeeeeccchhccCCe
Confidence 3333333455555 99999999988555444 567888855 466677665542 2 67788888777777789
Q ss_pred eeEEEEccchh
Q 043503 339 LDIVHSMHVLS 349 (430)
Q Consensus 339 fDlV~~~~~L~ 349 (430)
||.++.+..+.
T Consensus 115 fDtaviNppFG 125 (185)
T KOG3420|consen 115 FDTAVINPPFG 125 (185)
T ss_pred EeeEEecCCCC
Confidence 99999976664
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.17 Score=48.12 Aligned_cols=151 Identities=18% Similarity=0.179 Sum_probs=92.9
Q ss_pred cccccceeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-C-CEEEEEecCCCh----hHHHHHHhcCC
Q 043503 248 GREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-N-VTIITTSLNLDG----PFNSFIASRGL 321 (430)
Q Consensus 248 ~~e~~~~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~----~~le~a~~rg~ 321 (430)
+.+...|.-.+..+...|-.=+..+|......||=+|.-+|+....+++- + ..++++ +.++ ..+..+.+|.+
T Consensus 48 ~~eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaV--Efs~R~~reLl~~a~~R~N 125 (231)
T COG1889 48 GEEYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAV--EFSPRPMRELLDVAEKRPN 125 (231)
T ss_pred CcceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEE--EecchhHHHHHHHHHhCCC
Confidence 34444453333334433333334344444556799999999999999887 3 567887 4444 34567778877
Q ss_pred eeEEEcccccC---CCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc-c-----cCcCcHHHHHH
Q 043503 322 ISMHISVSQRL---PFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF-C-----FGSQLNETYVP 392 (430)
Q Consensus 322 i~~~~~d~~~l---pf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~-~-----~~~~~~~~~~~ 392 (430)
+--+..|+..- .+-=+..|+|.+ .+- .++ +.+-+..++...|++||++++.-=. + ...+.+++-.+
T Consensus 126 i~PIL~DA~~P~~Y~~~Ve~VDviy~-DVA---Qp~-Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~ 200 (231)
T COG1889 126 IIPILEDARKPEKYRHLVEKVDVIYQ-DVA---QPN-QAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVE 200 (231)
T ss_pred ceeeecccCCcHHhhhhcccccEEEE-ecC---Cch-HHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHH
Confidence 55566666431 122356899998 222 344 4777899999999999987764211 1 11113333445
Q ss_pred HHHHcCCEEEEEE
Q 043503 393 MLDRIGFKKLRWN 405 (430)
Q Consensus 393 ll~~~Gfk~l~~~ 405 (430)
.++..||+++...
T Consensus 201 kL~~~~f~i~e~~ 213 (231)
T COG1889 201 KLEEGGFEILEVV 213 (231)
T ss_pred HHHhcCceeeEEe
Confidence 6778899988754
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0013 Score=59.56 Aligned_cols=55 Identities=27% Similarity=0.386 Sum_probs=44.4
Q ss_pred eeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 322 ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 322 i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+.+++......+|.+++.|+|.+.++++|+.-+ ....++++++|+|||||++-+.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~-Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYD-EGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCcCcEEEEE
Confidence 344444455667999999999999999997654 4778999999999999999764
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.03 Score=53.54 Aligned_cols=105 Identities=14% Similarity=0.073 Sum_probs=69.4
Q ss_pred cEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHhcCC-----eeEEEccccc-CC-CCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIASRGL-----ISMHISVSQR-LP-FFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~rg~-----i~~~~~d~~~-lp-f~d~sfDlV~~~~~L~ 349 (430)
++||.||-|-|.....+.++. ...+.+ +..+...+..+..|- +-++.+-.++ ++ ++|+.||-|.--..-.
T Consensus 103 grvLnVGFGMgIidT~iQe~~p~~H~Ii--E~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e 180 (271)
T KOG1709|consen 103 GRVLNVGFGMGIIDTFIQEAPPDEHWII--EAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYSE 180 (271)
T ss_pred ceEEEeccchHHHHHHHhhcCCcceEEE--ecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechhh
Confidence 456999999999999998883 222223 666777777766543 5555554433 22 5689999999833222
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcH
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLN 387 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~ 387 (430)
+ .. ++..+.+.+.|+|||+|+|-+..-++-+..+.
T Consensus 181 ~-yE--dl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~ 215 (271)
T KOG1709|consen 181 L-YE--DLRHFHQHVVRLLKPEGVFSYFNGLGADNLMF 215 (271)
T ss_pred H-HH--HHHHHHHHHhhhcCCCceEEEecCcccchhhh
Confidence 2 22 37788899999999999986544444443333
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0041 Score=51.94 Aligned_cols=94 Identities=16% Similarity=0.176 Sum_probs=39.6
Q ss_pred EEEcCCccHHHHHHHHc---C--CEEEEEecCCC-hhHHHHHHhc---CCeeEEEcccccC-C-CCCCceeEEEEccchh
Q 043503 281 LDIGGGTGTFAARMRER---N--VTIITTSLNLD-GPFNSFIASR---GLISMHISVSQRL-P-FFENTLDIVHSMHVLS 349 (430)
Q Consensus 281 LDIGcGtG~~a~~La~~---g--~~Vv~vdiD~s-~~~le~a~~r---g~i~~~~~d~~~l-p-f~d~sfDlV~~~~~L~ 349 (430)
|++|+..|..+..+++. + .+++++|.... +...+.+++. ..+.++.++.... + ++++++|+|+.- .-+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iD-g~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFID-GDH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEE-S--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEEC-CCC
Confidence 68999999888887764 2 36888866542 1233333332 4488888876432 2 336789999983 221
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
. .......+..+.+.|+|||.+++.+
T Consensus 80 ~---~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 S---YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C---HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 1 1236678889999999999999865
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.025 Score=53.29 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=58.8
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCCh--hHHHHHHhcCC-eeEEEcccccCCCCCCceeEEEEccchhhcCC
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDG--PFNSFIASRGL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~--~~le~a~~rg~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~ 353 (430)
++|||+|.|+|..++..+..|. .|+..|+|+.. ...-+++.+|. +.+...|.-. .+..||+|+.+.++.+..
T Consensus 81 krVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~~~- 156 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYNHT- 156 (218)
T ss_pred ceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecCch-
Confidence 5679999999999998888865 56667555211 11123345565 5666665443 467899999988875422
Q ss_pred chhHHHHHHHHHHhccCCcEEEE
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
....++. +.+.|+..|.-++
T Consensus 157 --~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 157 --EADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred --HHHHHHH-HHHHHHhCCCEEE
Confidence 2455666 6666666555444
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.095 Score=48.15 Aligned_cols=120 Identities=14% Similarity=0.135 Sum_probs=81.8
Q ss_pred EcCCccHHHHHHHHc---CCEEEEEecCCChhHH----------HHHHhcCCeeEEEcccccCC----CCCCceeEEEEc
Q 043503 283 IGGGTGTFAARMRER---NVTIITTSLNLDGPFN----------SFIASRGLISMHISVSQRLP----FFENTLDIVHSM 345 (430)
Q Consensus 283 IGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~l----------e~a~~rg~i~~~~~d~~~lp----f~d~sfDlV~~~ 345 (430)
||=|.=+|+..|++. +..++++..|..+... +..++.|..-.+-.|+..+. ...+.||.|+-+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 677777899999887 4578888777554322 22233455444455777765 256889999997
Q ss_pred cchhhcC----------CchhHHHHHHHHHHhccCCcEEEEeeccccCcC-cHHHHHHHHHHcCCEEEEE
Q 043503 346 HVLSNWI----------PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-LNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 346 ~~L~~~~----------~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-~~~~~~~ll~~~Gfk~l~~ 404 (430)
+...... ....+..++..+.++|+++|.+.++..- +.. ..-.+.++.++.||...+.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~--~~py~~W~i~~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD--GQPYDSWNIEELAAEAGLVLVRK 150 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC--CCCCccccHHHHHHhcCCEEEEE
Confidence 5542200 1235677899999999999999998633 332 2345778999999998764
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.022 Score=53.33 Aligned_cols=92 Identities=13% Similarity=0.177 Sum_probs=64.8
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccchhhcC
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
++.|+|.|+|.++...+...-+|+++..| +.....|.++ |. +.++.+|+....| ...|+|+| ..+....
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rViAiE~d--Pk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvic-EmlDTaL 109 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERVIAIEKD--PKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVIC-EMLDTAL 109 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceEEEEecC--cHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHH-HHhhHHh
Confidence 35999999999998888877789988544 5555566665 33 7788899988887 45799999 3333222
Q ss_pred CchhHHHHHHHHHHhccCCcEEE
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lv 375 (430)
-++..-..+..+...||-.+.++
T Consensus 110 i~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hcccccHHHHHHHHHhhcCCccc
Confidence 22224456777777888888764
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.05 Score=54.14 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=81.5
Q ss_pred hhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHH----hcCC--eeEEEccccc
Q 043503 261 LDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIA----SRGL--ISMHISVSQR 331 (430)
Q Consensus 261 ~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~----~rg~--i~~~~~d~~~ 331 (430)
........+...++.. |||+.++.|.=+..+++. ...+++. |++..-+.... .-|. +.....|...
T Consensus 73 sS~l~~~~L~~~~~~~---VLD~CAapGgKt~~la~~~~~~g~i~A~--D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~ 147 (283)
T PF01189_consen 73 SSQLVALALDPQPGER---VLDMCAAPGGKTTHLAELMGNKGEIVAN--DISPKRLKRLKENLKRLGVFNVIVINADARK 147 (283)
T ss_dssp HHHHHHHHHTTTTTSE---EEESSCTTSHHHHHHHHHTTTTSEEEEE--ESSHHHHHHHHHHHHHTT-SSEEEEESHHHH
T ss_pred cccccccccccccccc---ccccccCCCCceeeeeecccchhHHHHh--ccCHHHHHHHHHHHHhcCCceEEEEeecccc
Confidence 3444455555555544 599999999988888877 3688888 55554443333 3355 5555566655
Q ss_pred CC--CCCCceeEEEEc------cchhh-------cCCc------hhHHHHHHHHHHhc----cCCcEEEEeeccccCcCc
Q 043503 332 LP--FFENTLDIVHSM------HVLSN-------WIPD------SMLEFTLYDIYRLL----RPGGIFWLDRFFCFGSQL 386 (430)
Q Consensus 332 lp--f~d~sfDlV~~~------~~L~~-------~~~d------~~l~~~L~ei~RvL----rPGG~lvl~~f~~~~~~~ 386 (430)
.. .....||.|+.- .++.. +.+. .....+|..+.+.+ ||||+++.++=....++-
T Consensus 148 ~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eEN 227 (283)
T PF01189_consen 148 LDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEEN 227 (283)
T ss_dssp HHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGT
T ss_pred ccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHH
Confidence 42 234469999981 11111 0011 13456889999999 999999987622122222
Q ss_pred HHHHHHHHHHc-CCEEEE
Q 043503 387 NETYVPMLDRI-GFKKLR 403 (430)
Q Consensus 387 ~~~~~~ll~~~-Gfk~l~ 403 (430)
.+.+...+++. .|+.+.
T Consensus 228 E~vV~~fl~~~~~~~l~~ 245 (283)
T PF01189_consen 228 EEVVEKFLKRHPDFELVP 245 (283)
T ss_dssp HHHHHHHHHHSTSEEEEC
T ss_pred HHHHHHHHHhCCCcEEEe
Confidence 34455566665 555544
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.12 Score=51.09 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=62.7
Q ss_pred CccEEEEEcCCccH--HHHHHHHc---CCEEEEEecCCChhHHHHHH----hc--CCeeEEEcccccCC----------C
Q 043503 276 TIRIGLDIGGGTGT--FAARMRER---NVTIITTSLNLDGPFNSFIA----SR--GLISMHISVSQRLP----------F 334 (430)
Q Consensus 276 ~ir~VLDIGcGtG~--~a~~La~~---g~~Vv~vdiD~s~~~le~a~----~r--g~i~~~~~d~~~lp----------f 334 (430)
.|+..||||||-=+ ..-.++++ +.+|+-+|.| +..+..++ .. |...++.+|..+-. +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~D--Pvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDND--PVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESS--HHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCC--chHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 68888999999642 34445544 7899999665 44443222 22 33678888876522 1
Q ss_pred --CCCceeEEEEccchhhcCCc-hhHHHHHHHHHHhccCCcEEEEeeccccCcC-cHHHHHHHHHHcC
Q 043503 335 --FENTLDIVHSMHVLSNWIPD-SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-LNETYVPMLDRIG 398 (430)
Q Consensus 335 --~d~sfDlV~~~~~L~~~~~d-~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-~~~~~~~ll~~~G 398 (430)
.++.+ .|+...++ ||+++ +....++..+...|.||+++.++|....... ..+....++++.|
T Consensus 146 lD~~rPV-avll~~vL-h~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~ 211 (267)
T PF04672_consen 146 LDFDRPV-AVLLVAVL-HFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAG 211 (267)
T ss_dssp --TTS---EEEECT-G-GGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCC
T ss_pred CCCCCCe-eeeeeeee-ccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCC
Confidence 12333 34444677 55654 6799999999999999999999998753321 1234555555543
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.055 Score=47.94 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=43.0
Q ss_pred CCccEEEEEcCCccHHHHHHHH-----c-CCEEEEEecCCChhHHHHHHhc----C-----CeeEEEcccccCCCCCCce
Q 043503 275 GTIRIGLDIGGGTGTFAARMRE-----R-NVTIITTSLNLDGPFNSFIASR----G-----LISMHISVSQRLPFFENTL 339 (430)
Q Consensus 275 ~~ir~VLDIGcGtG~~a~~La~-----~-g~~Vv~vdiD~s~~~le~a~~r----g-----~i~~~~~d~~~lpf~d~sf 339 (430)
.....|+|+|||.|.++..++. . +.+|+++|.+ +...+.+..+ + ...+..++....+ .....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCN--ESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECC--cHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCC
Confidence 4456779999999999999998 4 7899998554 4444444333 2 1333333332221 14566
Q ss_pred eEEEEcc
Q 043503 340 DIVHSMH 346 (430)
Q Consensus 340 DlV~~~~ 346 (430)
++++.-+
T Consensus 101 ~~~vgLH 107 (141)
T PF13679_consen 101 DILVGLH 107 (141)
T ss_pred eEEEEee
Confidence 7777743
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.27 Score=48.67 Aligned_cols=125 Identities=16% Similarity=0.161 Sum_probs=77.9
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChhHHHHHHh----cCC---eeEEEcccccCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGPFNSFIAS----RGL---ISMHISVSQRLPF 334 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~~le~a~~----rg~---i~~~~~d~~~lpf 334 (430)
|-.+|+..|+.. |++-|.|+|++.-++++. + .++++. |+.+.-.+.|.+ .|. +.+.+-|....-|
T Consensus 97 I~~~L~i~PGsv---V~EsGTGSGSlShaiaraV~ptGhl~tf--efH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 97 ILSMLEIRPGSV---VLESGTGSGSLSHAIARAVAPTGHLYTF--EFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHhcCCCCCE---EEecCCCcchHHHHHHHhhCcCcceEEE--EecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 555666666544 599999999999999887 3 466666 555554444543 343 7777777655444
Q ss_pred --CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEE
Q 043503 335 --FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 335 --~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
.+..+|.|+.- . |. ....+--++.+||-+|.-+. .|..=-++. +.-.+.+.+.||.-+..
T Consensus 172 ~~ks~~aDaVFLD-l-----Pa--Pw~AiPha~~~lk~~g~r~c-sFSPCIEQv-qrtce~l~~~gf~~i~~ 233 (314)
T KOG2915|consen 172 LIKSLKADAVFLD-L-----PA--PWEAIPHAAKILKDEGGRLC-SFSPCIEQV-QRTCEALRSLGFIEIET 233 (314)
T ss_pred cccccccceEEEc-C-----CC--hhhhhhhhHHHhhhcCceEE-eccHHHHHH-HHHHHHHHhCCCceEEE
Confidence 36789999983 2 22 34566777779998775322 222111112 23445778889875543
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.3 Score=49.85 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=58.3
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc------------C------CEEEEEecCCChhHH----------HHH
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER------------N------VTIITTSLNLDGPFN----------SFI 316 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~------------g------~~Vv~vdiD~s~~~l----------e~a 316 (430)
|..++......+.=+|+|+||.+|..+..+... + ++|+--|+- +..+. +..
T Consensus 5 i~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP-~NDFn~lF~~l~~~~~~~ 83 (334)
T PF03492_consen 5 IKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLP-SNDFNTLFKSLPSFQQSL 83 (334)
T ss_dssp HHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-T-TS-HHHHHHCHHHHHHHH
T ss_pred HHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC-CccHHHHHHhChhhhhcc
Confidence 444543223333335699999999877665543 1 356655442 11111 111
Q ss_pred HhcCC--eeEEEcccccCCCCCCceeEEEEccchhhcCCc-------------------------------------hhH
Q 043503 317 ASRGL--ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPD-------------------------------------SML 357 (430)
Q Consensus 317 ~~rg~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d-------------------------------------~~l 357 (430)
...+. +..+.+.+..--||+++.|+++++.++ ||... .++
T Consensus 84 ~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~al-HWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~ 162 (334)
T PF03492_consen 84 KKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYAL-HWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDF 162 (334)
T ss_dssp HHTTSEEEEEEES-TTS--S-TT-EEEEEEES-T-TB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHH
T ss_pred CCCceEEEEecCchhhhccCCCCceEEEEEechh-hhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHH
Confidence 11122 222334444434789999999999999 77521 123
Q ss_pred HHHHHHHHHhccCCcEEEEeecc
Q 043503 358 EFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 358 ~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
..+|.-=.+-|+|||.+++.-+.
T Consensus 163 ~~FL~~Ra~ELv~GG~mvl~~~g 185 (334)
T PF03492_consen 163 SSFLKARAEELVPGGRMVLTFLG 185 (334)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHhhheeccCcEEEEEEee
Confidence 34555556678899999986443
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.064 Score=49.23 Aligned_cols=119 Identities=21% Similarity=0.170 Sum_probs=72.9
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHH---hcC----CeeE--EEc--ccccCCCCCCceeEEE
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIA---SRG----LISM--HIS--VSQRLPFFENTLDIVH 343 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~---~rg----~i~~--~~~--d~~~lpf~d~sfDlV~ 343 (430)
+.||++|+|--.++..|... ...|..+ |-.+..++..+ .++ .-.. ..- ..........+||+|+
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~lt--dgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLT--DGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEe--cCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 44599999987777666544 4455555 54455444433 222 1111 100 1111122346899999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
|..|+. .++ ....+++-|.+.|+|.|.-++. .+...+..+.+.......||.+..
T Consensus 109 aADClF--fdE-~h~sLvdtIk~lL~p~g~Al~f--sPRRg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 109 AADCLF--FDE-HHESLVDTIKSLLRPSGRALLF--SPRRGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred eccchh--HHH-HHHHHHHHHHHHhCcccceeEe--cCcccchHHHHHHHHHhceeEEEe
Confidence 999983 222 4678999999999999996663 233344456677778889988765
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.11 Score=49.94 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=50.6
Q ss_pred eEEEcccccC--CCCCCceeEEEEccchh----hcCC--------chhHHHHHHHHHHhccCCcEEEEeeccccCcCcHH
Q 043503 323 SMHISVSQRL--PFFENTLDIVHSMHVLS----NWIP--------DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNE 388 (430)
Q Consensus 323 ~~~~~d~~~l--pf~d~sfDlV~~~~~L~----~~~~--------d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~ 388 (430)
.++.+|+-.+ .++++++|+|++..... +... .+-....+.+++|+|||||.+++. +.. ....
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if---~~~-~~~~ 78 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF---YGW-NRVD 78 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE---ecc-ccHH
Confidence 4667776443 46799999999964331 0000 012457889999999999998762 111 1124
Q ss_pred HHHHHHHHcCCEEEEEE
Q 043503 389 TYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 389 ~~~~ll~~~Gfk~l~~~ 405 (430)
.+..++++.||+.....
T Consensus 79 ~~~~al~~~GF~l~~~I 95 (227)
T PRK13699 79 RFMAAWKNAGFSVVGHL 95 (227)
T ss_pred HHHHHHHHCCCEEeeEE
Confidence 56677889999866433
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.045 Score=52.78 Aligned_cols=104 Identities=17% Similarity=0.259 Sum_probs=64.1
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--------CC---EEEEEecCCChhHHHHHHhcCCeeEEEcccccCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--------NV---TIITTSLNLDGPFNSFIASRGLISMHISVSQRLP 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--------g~---~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp 333 (430)
+++-..++.+ +++|+|+..-.|+|...+.++ +. .++++|+.. | |--.|+ --+++|.....
T Consensus 32 ideef~i~~g--v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~---M---aPI~GV-~qlq~DIT~~s 102 (294)
T KOG1099|consen 32 IDEEFQIFEG--VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP---M---APIEGV-IQLQGDITSAS 102 (294)
T ss_pred hhhhhhHHhh--hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc---C---CccCce-EEeecccCCHh
Confidence 3333344443 667799999999999998876 11 278886532 1 111233 23345544322
Q ss_pred --------CCCCceeEEEEccc--------hhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 334 --------FFENTLDIVHSMHV--------LSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 334 --------f~d~sfDlV~~~~~--------L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
|.....|+|+|-.. +..++..+.+...|.-..++|||||.|+--
T Consensus 103 tae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 103 TAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 44568999999432 222333335566777788999999999764
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.064 Score=46.79 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=29.1
Q ss_pred EEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHh
Q 043503 279 IGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIAS 318 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~ 318 (430)
++||+|||.|.++..+++.+ .+|+++ |+++.+.+.+++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~--E~~~~~~~~l~~ 40 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAF--EPLPDAYEILEE 40 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEE--ecCHHHHHHHHH
Confidence 36999999999999999884 368888 556666655443
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.39 Score=49.41 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=82.1
Q ss_pred CccEEEEEcCCccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhc--------C-----CeeEEEcccccC-CCCCCce
Q 043503 276 TIRIGLDIGGGTGTFAARMRER-N-VTIITTSLNLDGPFNSFIASR--------G-----LISMHISVSQRL-PFFENTL 339 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~r--------g-----~i~~~~~d~~~l-pf~d~sf 339 (430)
..+.||-+|+|.|--+..+.+. + -+|+-+ |.++.|++.++.+ | .+.++..|+..+ .-..+.|
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lV--dLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLV--DLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEE--ecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 3567899999999999999988 3 366777 5558888887632 1 166666665433 2345689
Q ss_pred eEEEEccchhhcCC---chhHHHHHHHHHHhccCCcEEEEeeccc-cCcCcHHHHHHHHHHcCCEEEEEEeccc
Q 043503 340 DIVHSMHVLSNWIP---DSMLEFTLYDIYRLLRPGGIFWLDRFFC-FGSQLNETYVPMLDRIGFKKLRWNVGMK 409 (430)
Q Consensus 340 DlV~~~~~L~~~~~---d~~l~~~L~ei~RvLrPGG~lvl~~f~~-~~~~~~~~~~~ll~~~Gfk~l~~~~~~k 409 (430)
|.|+.-. .+.-.+ .---..+..-+.|.|+++|.+++.--.. ..++..-.+...++++||......+-..
T Consensus 367 D~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VP 439 (508)
T COG4262 367 DVVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVP 439 (508)
T ss_pred cEEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecC
Confidence 9999821 111001 0012346667888999999998742110 0112223356678899999877765443
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.028 Score=48.17 Aligned_cols=39 Identities=41% Similarity=0.755 Sum_probs=30.3
Q ss_pred ceeEEEEccchhhcC----CchhHHHHHHHHHHhccCCcEEEEe
Q 043503 338 TLDIVHSMHVLSNWI----PDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 338 sfDlV~~~~~L~~~~----~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.||+|+|..+. -|+ .|+.+..++..+++.|+|||.|++.
T Consensus 1 ~yDvilclSVt-kWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVT-KWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-H-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEee-EEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999996554 444 2446889999999999999999984
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.096 Score=50.30 Aligned_cols=119 Identities=17% Similarity=0.120 Sum_probs=76.9
Q ss_pred ccccccceeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC-
Q 043503 247 QGREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL- 321 (430)
Q Consensus 247 ~~~e~~~~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~- 321 (430)
+.++...|+.+.....+....+..... ...|+|.-||.|..++..+.++..|+++|+| +.-+..|+.+ |.
T Consensus 68 md~e~wfsvTpe~ia~~iA~~v~~~~~---~~~iidaf~g~gGntiqfa~~~~~VisIdiD--PikIa~AkhNaeiYGI~ 142 (263)
T KOG2730|consen 68 MDREGWFSVTPEKIAEHIANRVVACMN---AEVIVDAFCGVGGNTIQFALQGPYVIAIDID--PVKIACARHNAEVYGVP 142 (263)
T ss_pred ecccceEEeccHHHHHHHHHHHHHhcC---cchhhhhhhcCCchHHHHHHhCCeEEEEecc--HHHHHHHhccceeecCC
Confidence 445555666666655554444443332 2345999999999999999999999998555 5556666655 44
Q ss_pred --eeEEEccccc----CCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcE
Q 043503 322 --ISMHISVSQR----LPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGI 373 (430)
Q Consensus 322 --i~~~~~d~~~----lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~ 373 (430)
+.|+++|.-. +.+.-..+|+|+.+.. |.-.+.+..-+.++...+.|.|.
T Consensus 143 ~rItFI~GD~ld~~~~lq~~K~~~~~vf~spp---wggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 143 DRITFICGDFLDLASKLKADKIKYDCVFLSPP---WGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred ceeEEEechHHHHHHHHhhhhheeeeeecCCC---CCCcchhhhhhhhhhhhcchhHH
Confidence 8999998543 3344444677777533 33223455666677777777654
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.28 Score=51.04 Aligned_cols=45 Identities=27% Similarity=0.417 Sum_probs=32.9
Q ss_pred CCCCCceeEEEEccchhhcCCc---h---------------------------------hHHHHHHHHHHhccCCcEEEE
Q 043503 333 PFFENTLDIVHSMHVLSNWIPD---S---------------------------------MLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 333 pf~d~sfDlV~~~~~L~~~~~d---~---------------------------------~l~~~L~ei~RvLrPGG~lvl 376 (430)
-||+++.+++|++.++ ||... + ++..+|.-=.+-|.|||.+++
T Consensus 157 LfP~~Slh~~~Ss~sl-HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl 235 (386)
T PLN02668 157 LFPARSIDVFHSAFSL-HWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFL 235 (386)
T ss_pred ccCCCceEEEEeeccc-eecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEE
Confidence 3889999999999999 78642 1 133345555667889999998
Q ss_pred ee
Q 043503 377 DR 378 (430)
Q Consensus 377 ~~ 378 (430)
.-
T Consensus 236 ~~ 237 (386)
T PLN02668 236 VC 237 (386)
T ss_pred EE
Confidence 63
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=93.26 E-value=1.5 Score=43.36 Aligned_cols=125 Identities=11% Similarity=0.142 Sum_probs=72.0
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCC--CCceeEEEEccchhhc-----
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFF--ENTLDIVHSMHVLSNW----- 351 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~--d~sfDlV~~~~~L~~~----- 351 (430)
+++|+-||.|.+...+.+.|.+++.. +|+++...+..+.+-.-.++.+|...+... ...+|+++.+..--.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a-~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~ 80 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAA-NEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGK 80 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEE-EeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhh
Confidence 36999999999999998888876543 366666666655553223556676665522 3569999985422111
Q ss_pred ---CCchhHHHHHH---HHHHhccCCcEEEEeec---cc-cCcCcHHHHHHHHHHcCCEEEEEEe
Q 043503 352 ---IPDSMLEFTLY---DIYRLLRPGGIFWLDRF---FC-FGSQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 352 ---~~d~~l~~~L~---ei~RvLrPGG~lvl~~f---~~-~~~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
..+ ....++. ++.+.++|. +|++... .. ......+.+...+++.||.+.....
T Consensus 81 ~~~~~d-~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l 143 (275)
T cd00315 81 RKGFED-TRGTLFFEIIRILKEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLL 143 (275)
T ss_pred cCCCCC-chHHHHHHHHHHHHhcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEE
Confidence 111 1222333 444455666 3333211 11 1122456688889999998654443
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.3 Score=46.51 Aligned_cols=95 Identities=21% Similarity=0.319 Sum_probs=50.7
Q ss_pred EEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----------CC---eeEEEcccc-cCC--CCCCcee-
Q 043503 280 GLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----------GL---ISMHISVSQ-RLP--FFENTLD- 340 (430)
Q Consensus 280 VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----------g~---i~~~~~d~~-~lp--f~d~sfD- 340 (430)
..|||||.|.+...++... --++|+ ++.....+.+++| |. +.+....+. -+| |.-++.+
T Consensus 64 faDIGCGyGGLlv~Lsp~fPdtLiLGm--EIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 64 FADIGCGYGGLLMKLAPKFPDTLILGM--EIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred EEeeccCccchhhhccccCccceeeee--hhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 3999999999999999983 344555 5544444444333 11 333333322 222 1122211
Q ss_pred EEEEccchhhcCCc-----hhHHHHHHHHHHhccCCcEEEEe
Q 043503 341 IVHSMHVLSNWIPD-----SMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 341 lV~~~~~L~~~~~d-----~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+.++..-- |+-.. -....++.+..-+|++||.++..
T Consensus 142 mff~fpdp-Hfk~~khk~rii~~~l~~eyay~l~~gg~~yti 182 (249)
T KOG3115|consen 142 MFFLFPDP-HFKARKHKWRIITSTLLSEYAYVLREGGILYTI 182 (249)
T ss_pred ceeecCCh-hHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence 12221111 11100 01235789999999999999864
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.86 Score=45.36 Aligned_cols=97 Identities=11% Similarity=0.109 Sum_probs=53.2
Q ss_pred ccEEEEEcCCccHHHHHHHH-c---CCEEEEEecCCChhHHHHHH---h-c----CCeeEEEcccccCCCCCCceeEEEE
Q 043503 277 IRIGLDIGGGTGTFAARMRE-R---NVTIITTSLNLDGPFNSFIA---S-R----GLISMHISVSQRLPFFENTLDIVHS 344 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~-~---g~~Vv~vdiD~s~~~le~a~---~-r----g~i~~~~~d~~~lpf~d~sfDlV~~ 344 (430)
.++|+=||+|.=-++..+.. + +..|+++|+| +...+.++ . . ..+.|+.+|....+..-..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d--~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDID--PEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESS--HHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCC--HHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 35679999998766655544 3 4567788665 44444332 1 1 2388999998776655578999998
Q ss_pred ccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 345 MHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 345 ~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.... . ...+...+++..+.+.++||..+++-
T Consensus 199 AalV-g-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 199 AALV-G-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -TT--S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhhc-c-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 5433 2 22224789999999999999988874
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.32 Score=49.70 Aligned_cols=95 Identities=20% Similarity=0.156 Sum_probs=63.8
Q ss_pred CCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcc-cccCCCCCCceeEEEEccchh
Q 043503 272 KPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISV-SQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 272 ~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d-~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.|+..+ -|.-+| |.|.++..+++. |++|+++ |.++.-.+.|++-|--.++... .....--.+.||+|+..-.
T Consensus 165 ~pG~~V-~I~G~G-GlGh~avQ~Aka~ga~Via~--~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-- 238 (339)
T COG1064 165 KPGKWV-AVVGAG-GLGHMAVQYAKAMGAEVIAI--TRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-- 238 (339)
T ss_pred CCCCEE-EEECCc-HHHHHHHHHHHHcCCeEEEE--eCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC--
Confidence 444443 224455 667899999985 9999998 6678888888888775555532 2121111223999998422
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
...+...-+.||+||.+++....
T Consensus 239 --------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 --------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred --------hhhHHHHHHHHhcCCEEEEECCC
Confidence 13577888999999999987655
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.12 Score=55.01 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=39.5
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHH----HHhcCC--eeEEEccccc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSF----IASRGL--ISMHISVSQR 331 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~----a~~rg~--i~~~~~d~~~ 331 (430)
..+||+-||||.++..++++-..|+|+.++ +...+. |+.+|. ..|+++-+++
T Consensus 385 k~llDv~CGTG~iglala~~~~~ViGvEi~--~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARGVKRVIGVEIS--PDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred cEEEEEeecCCceehhhhccccceeeeecC--hhhcchhhhcchhcCccceeeeecchhh
Confidence 458999999999999999988899998554 444444 445565 8899985554
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=92.75 E-value=2.3 Score=41.43 Aligned_cols=129 Identities=17% Similarity=0.144 Sum_probs=67.6
Q ss_pred cEEEEEcCCcc-HHHHHHHHcCCEEEEEecCCChhHHHHH----HhcCC-eeEEEcccc-cCCC-CCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTG-TFAARMRERNVTIITTSLNLDGPFNSFI----ASRGL-ISMHISVSQ-RLPF-FENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG-~~a~~La~~g~~Vv~vdiD~s~~~le~a----~~rg~-i~~~~~d~~-~lpf-~d~sfDlV~~~~~L~ 349 (430)
+.||=+|-+-- +++..+.....+|+.+ |+++.+++++ ++.|. +..+..|+. .+|- .-++||++++...-
T Consensus 46 k~il~lGDDDLtSlA~al~~~~~~I~Vv--DiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy- 122 (243)
T PF01861_consen 46 KRILFLGDDDLTSLALALTGLPKRITVV--DIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPY- 122 (243)
T ss_dssp -EEEEES-TT-HHHHHHHHT--SEEEEE---S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---S-
T ss_pred CEEEEEcCCcHHHHHHHhhCCCCeEEEE--EcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCC-
Confidence 45699987766 4555555557788888 5557666544 44565 777777764 3441 24799999995333
Q ss_pred hcCCchhHHHHHHHHHHhccCCc-EEEEeeccccCcC--cHHHHHHHHHHcCCEEEEEEecccccCC
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGG-IFWLDRFFCFGSQ--LNETYVPMLDRIGFKKLRWNVGMKLDRG 413 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG-~lvl~~f~~~~~~--~~~~~~~ll~~~Gfk~l~~~~~~k~~~g 413 (430)
..+ .+.-++..-...||.-| ..++ .|.-.+.. ....+++.+.+.||-+..+...-....|
T Consensus 123 --T~~-G~~LFlsRgi~~Lk~~g~~gy~-~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~~Fn~Y~g 185 (243)
T PF01861_consen 123 --TPE-GLKLFLSRGIEALKGEGCAGYF-GFTHKEASPDKWLEVQRFLLEMGLVITDIIPDFNRYEG 185 (243)
T ss_dssp --SHH-HHHHHHHHHHHTB-STT-EEEE-EE-TTT--HHHHHHHHHHHHTS--EEEEEEEEEEEB--
T ss_pred --CHH-HHHHHHHHHHHHhCCCCceEEE-EEecCcCcHHHHHHHHHHHHHCCcCHHHHHhhhccccc
Confidence 333 37778999999999766 4333 22322211 2346788888999998877655444333
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.3 Score=46.50 Aligned_cols=96 Identities=10% Similarity=-0.009 Sum_probs=50.9
Q ss_pred cEEEEEcCCccHHHHHHHHc------CCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCC----C----CCCce
Q 043503 278 RIGLDIGGGTGTFAARMRER------NVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLP----F----FENTL 339 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~------g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lp----f----~d~sf 339 (430)
++|+++|.=.|.-+..+|+. ..+|+++|+|+.+.-. .+.+. ..|.++.+|..... . .....
T Consensus 34 d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~-~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 34 DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR-KAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S--GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch-HHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 44699998887666555543 4799999998755322 22333 56899999765422 1 12234
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.+|+- ..- |-... ....|.-....++||+++++.+
T Consensus 113 vlVil-Ds~-H~~~h--vl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 113 VLVIL-DSS-HTHEH--VLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEEEE-SS-----SS--HHHHHHHHHHT--TT-EEEETS
T ss_pred eEEEE-CCC-ccHHH--HHHHHHHhCccCCCCCEEEEEe
Confidence 45555 222 21222 5667788999999999998854
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.83 Score=40.93 Aligned_cols=109 Identities=16% Similarity=0.137 Sum_probs=64.5
Q ss_pred EEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCC--CCCCceeEEEEccchhhcC------CchhHHHHHHHH
Q 043503 300 TIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLP--FFENTLDIVHSMHVLSNWI------PDSMLEFTLYDI 364 (430)
Q Consensus 300 ~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lp--f~d~sfDlV~~~~~L~~~~------~d~~l~~~L~ei 364 (430)
+|+++ |+.+..++..+++ + .+.++...-+.+. .+++++|+|+.+...-.-. ..+.....+..+
T Consensus 1 kVyaF--DIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAF--DIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEE--ES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEE--ECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 47777 6667767666544 3 3788887766665 2335899999974431111 112456789999
Q ss_pred HHhccCCcEEEEeeccccCcCc-----HHHHHHHHHHcCCEEEEEEecccc
Q 043503 365 YRLLRPGGIFWLDRFFCFGSQL-----NETYVPMLDRIGFKKLRWNVGMKL 410 (430)
Q Consensus 365 ~RvLrPGG~lvl~~f~~~~~~~-----~~~~~~ll~~~Gfk~l~~~~~~k~ 410 (430)
.+.|+|||.+.+.-+..++... ...|..-+....|.+.++..-...
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~~ 129 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQK 129 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-S
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCCC
Confidence 9999999999987666444321 123455555677888888766553
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.63 Score=46.94 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=53.7
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-----CCeeEEEcccccCC----
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-----GLISMHISVSQRLP---- 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-----g~i~~~~~d~~~lp---- 333 (430)
+++++..+......+++|.-+|.|..+..++++ +.+|+++ |.++.+++.++++ +.+.++++++..+.
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigi--D~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGI--DRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEE--cCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence 445555443333346799999999999999987 4788988 5556777776654 34778888766543
Q ss_pred -CCCCceeEEEE
Q 043503 334 -FFENTLDIVHS 344 (430)
Q Consensus 334 -f~d~sfDlV~~ 344 (430)
...+++|.|+.
T Consensus 87 ~~~~~~vDgIl~ 98 (305)
T TIGR00006 87 ELLVTKIDGILV 98 (305)
T ss_pred hcCCCcccEEEE
Confidence 13356888888
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.95 Score=45.56 Aligned_cols=83 Identities=14% Similarity=0.165 Sum_probs=38.2
Q ss_pred HHHHHccCCCC--CccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHh----c-C---CeeEEEccc---
Q 043503 265 IDQVLSMKPLG--TIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIAS----R-G---LISMHISVS--- 329 (430)
Q Consensus 265 id~lL~~~p~~--~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~----r-g---~i~~~~~d~--- 329 (430)
+.+++...... ..-++||||+|...+=..|..+ |.+++++|+| +..++.|++ + + .|.+.....
T Consensus 89 i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID--~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~ 166 (299)
T PF05971_consen 89 IADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDID--PKSLESARENVERNPNLESRIELRKQKNPDN 166 (299)
T ss_dssp HHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES---HHHHHHHHHHHHHT-T-TTTEEEEE--ST-S
T ss_pred HHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCC--HHHHHHHHHHHHhccccccceEEEEcCCccc
Confidence 45555433222 1246799999998443223322 8999999665 566666553 3 2 366654421
Q ss_pred --ccCCCCCCceeEEEEccchh
Q 043503 330 --QRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 330 --~~lpf~d~sfDlV~~~~~L~ 349 (430)
..+..++..||+.+|+..++
T Consensus 167 i~~~i~~~~e~~dftmCNPPFy 188 (299)
T PF05971_consen 167 IFDGIIQPNERFDFTMCNPPFY 188 (299)
T ss_dssp STTTSTT--S-EEEEEE-----
T ss_pred cchhhhcccceeeEEecCCccc
Confidence 11223356899999987774
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.46 Score=47.15 Aligned_cols=77 Identities=12% Similarity=0.161 Sum_probs=47.5
Q ss_pred eeEEEcccccC--CCCCCceeEEEEccchhh----------cCCc---hhHHHHHHHHHHhccCCcEEEEeeccccCcCc
Q 043503 322 ISMHISVSQRL--PFFENTLDIVHSMHVLSN----------WIPD---SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQL 386 (430)
Q Consensus 322 i~~~~~d~~~l--pf~d~sfDlV~~~~~L~~----------~~~d---~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~ 386 (430)
..++.+|+..+ .+++++||+|++.-.... |... ..+...+.++.|+|||||.+++.. .....
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~---~~~~~ 85 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN---STENM 85 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc---Cchhh
Confidence 35677776553 356889999999643310 0000 123578999999999999999842 21211
Q ss_pred HHHHHHHHHHcCCEEEE
Q 043503 387 NETYVPMLDRIGFKKLR 403 (430)
Q Consensus 387 ~~~~~~ll~~~Gfk~l~ 403 (430)
.+..++.+.||....
T Consensus 86 --~~~~~~~~~~f~~~~ 100 (284)
T PRK11524 86 --PFIDLYCRKLFTIKS 100 (284)
T ss_pred --hHHHHHHhcCcceEE
Confidence 234556677886443
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.79 Score=39.00 Aligned_cols=85 Identities=19% Similarity=0.180 Sum_probs=59.8
Q ss_pred CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccchhhcCCchhHH
Q 043503 286 GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVLSNWIPDSMLE 358 (430)
Q Consensus 286 GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L~~~~~d~~l~ 358 (430)
|.|.++..+++. |.+|+++ +.++.-.+.+++-|.-.++......+. ...+.+|+|+-.-.. .
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~--~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~---------~ 69 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIAT--DRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS---------G 69 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEE--ESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS---------H
T ss_pred ChHHHHHHHHHHcCCEEEEE--ECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCc---------H
Confidence 568888888877 9999988 566777888888884333333222111 234589999874221 3
Q ss_pred HHHHHHHHhccCCcEEEEeeccc
Q 043503 359 FTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 359 ~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
..+.....+|+|||.+++.....
T Consensus 70 ~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 70 DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHhccCCEEEEEEccC
Confidence 57889999999999999987664
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.11 E-value=2.5 Score=41.45 Aligned_cols=100 Identities=20% Similarity=0.199 Sum_probs=60.0
Q ss_pred cEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc--------C-CeeEEEccc-ccCC--CCCCc-eeEEE
Q 043503 278 RIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR--------G-LISMHISVS-QRLP--FFENT-LDIVH 343 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r--------g-~i~~~~~d~-~~lp--f~d~s-fDlV~ 343 (430)
..||++|.|+|..++.++.. +.+|+..|.-.....++..... | .+.+...+. .... +.... ||+|+
T Consensus 88 ~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dlil 167 (248)
T KOG2793|consen 88 INVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLIL 167 (248)
T ss_pred eeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEE
Confidence 45799999999877777775 7777766443222222222111 2 222222222 2211 22223 99999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
++.++.+ +. ..+.++.-+...|-.+|.+++....
T Consensus 168 asDvvy~--~~-~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 168 ASDVVYE--EE-SFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred Eeeeeec--CC-cchhHHHHHHHHHhcCCeEEEEEec
Confidence 9988843 22 3667888888889999977776544
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=91.10 E-value=1.8 Score=42.57 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=56.9
Q ss_pred EEEEEcCC-ccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccC-----CCCCCceeEEEEccchhhc
Q 043503 279 IGLDIGGG-TGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRL-----PFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 279 ~VLDIGcG-tG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l-----pf~d~sfDlV~~~~~L~~~ 351 (430)
+||..|+| .|..++.+++. |.+|+.+ +.++...+.+++.|.-.++....... ....+.+|+|+.....
T Consensus 168 ~vli~g~g~vG~~~~~la~~~G~~V~~~--~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g~--- 242 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAMGAAVIAV--DIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGT--- 242 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCEEEEE--cCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCCC---
Confidence 44667876 47788888776 8888877 55677777777666522222111111 1235679998863211
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+.++.+.|++||.++...
T Consensus 243 ------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 243 ------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ------HHHHHHHHHHhhcCCEEEEEC
Confidence 236778899999999998753
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=90.45 E-value=4.3 Score=33.87 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=65.3
Q ss_pred CCccHHHHHHHHc----CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC----CCCCceeEEEEccchhhcCCchh
Q 043503 285 GGTGTFAARMRER----NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP----FFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 285 cGtG~~a~~La~~----g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp----f~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
||.|.++..+++. +..|+.+ |.++...+.+.+.| +.++.+|..+.. ..-...|.|++. .+++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvi--d~d~~~~~~~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~------~~~d~ 74 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVI--DRDPERVEELREEG-VEVIYGDATDPEVLERAGIEKADAVVIL------TDDDE 74 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEE--ESSHHHHHHHHHTT-SEEEES-TTSHHHHHHTTGGCESEEEEE------SSSHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEE--ECCcHHHHHHHhcc-cccccccchhhhHHhhcCccccCEEEEc------cCCHH
Confidence 5667777777665 5588888 44566677777778 578888765532 223568888883 23333
Q ss_pred HHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEE
Q 043503 357 LEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 357 l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
....+....|-+.|...++..-. .+...+.+++.|...+
T Consensus 75 ~n~~~~~~~r~~~~~~~ii~~~~-------~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 75 ENLLIALLARELNPDIRIIARVN-------DPENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEES-------SHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEEC-------CHHHHHHHHHCCcCEE
Confidence 55567777788888888776321 2556777888887644
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=89.69 E-value=2.3 Score=43.62 Aligned_cols=100 Identities=15% Similarity=0.009 Sum_probs=61.6
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccc-----cC-CC-CCCceeEEEEccc
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQ-----RL-PF-FENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~-----~l-pf-~d~sfDlV~~~~~ 347 (430)
.+||.+|||. |.++..+++. |. +++++ +.++...+.+++.+...++..... .+ .+ ..+.+|+|+..-.
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~~~vi~~--~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg 263 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGAERVIAI--DRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAVG 263 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECCC
Confidence 3469999988 8888888877 76 57777 666778888887733333221111 11 11 2346899988421
Q ss_pred hh-------hc-----CCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 348 LS-------NW-----IPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 348 L~-------~~-----~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
-. +. .+..+....+.++.+.++|||.+++...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 264 MEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 10 00 0011124578899999999999987643
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=89.49 E-value=1.5 Score=42.91 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=49.1
Q ss_pred HHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCC
Q 043503 264 GIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFE 336 (430)
Q Consensus 264 ~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d 336 (430)
..+.++...+ ...+|+|||||.--++...... +.++++.|+| ..+.++...- +. ..+.+.|...-+ +.
T Consensus 95 fY~~if~~~~--~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID--~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~ 169 (251)
T PF07091_consen 95 FYDEIFGRIP--PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDID--SQLVEFLNAFLAVLGVPHDARVRDLLSDP-PK 169 (251)
T ss_dssp HHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESB--HHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TT
T ss_pred HHHHHHhcCC--CCchhhhhhccCCceehhhcccCCCcEEEEEeCC--HHHHHHHHHHHHhhCCCcceeEeeeeccC-CC
Confidence 3455555443 2566799999999999988776 6788888555 6666554432 32 556666654433 46
Q ss_pred CceeEEEEccch
Q 043503 337 NTLDIVHSMHVL 348 (430)
Q Consensus 337 ~sfDlV~~~~~L 348 (430)
...|+.+..-++
T Consensus 170 ~~~DlaLllK~l 181 (251)
T PF07091_consen 170 EPADLALLLKTL 181 (251)
T ss_dssp SEESEEEEET-H
T ss_pred CCcchhhHHHHH
Confidence 779999996555
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.48 Score=48.52 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=52.5
Q ss_pred cEEEEEcCCccHHHHHHHHc--C-CEEEEEecCCChhHHHHH---HhcCC---eeEEEccc--ccCCCC-CCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRER--N-VTIITTSLNLDGPFNSFI---ASRGL---ISMHISVS--QRLPFF-ENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g-~~Vv~vdiD~s~~~le~a---~~rg~---i~~~~~d~--~~lpf~-d~sfDlV~~~ 345 (430)
..+||+|.|.|+-+.++-.- . -.++.+ +.++...+.. .++-. ......+. .+++++ ...|++|+..
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~il--e~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVIL--EASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhh--ccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 34599999999866555433 1 111111 3333322221 22210 11122221 244443 4467777765
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+-+.+...+..+...+..+..++.|||.|+|.+
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence 554332323234458999999999999999965
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=88.87 E-value=0.56 Score=40.22 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=23.0
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEe
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTS 305 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vd 305 (430)
.-+|||||+|.+.--|.+.|+.-.|+|
T Consensus 61 ~FVDlGCGNGLLV~IL~~EGy~G~GiD 87 (112)
T PF07757_consen 61 GFVDLGCGNGLLVYILNSEGYPGWGID 87 (112)
T ss_pred ceEEccCCchHHHHHHHhCCCCccccc
Confidence 349999999999988888899877774
|
; GO: 0008168 methyltransferase activity |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.77 E-value=2.7 Score=41.27 Aligned_cols=70 Identities=10% Similarity=-0.050 Sum_probs=46.4
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHH---HHHHhc------------CCeeEEEcccccC-CCCCCceeE
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFN---SFIASR------------GLISMHISVSQRL-PFFENTLDI 341 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~l---e~a~~r------------g~i~~~~~d~~~l-pf~d~sfDl 341 (430)
.+|||+-+|+|..+..++.+|++|+.+ +-++... +...++ ..+.++.+|...+ .-...+||+
T Consensus 90 p~VLD~TAGlG~Da~~las~G~~V~~v--Er~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDV 167 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGCRVRML--ERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_pred CEEEECCCCccHHHHHHHHcCCEEEEE--ECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcE
Confidence 367999999999999999999998888 5555332 211111 1256666765332 212347999
Q ss_pred EEEccchh
Q 043503 342 VHSMHVLS 349 (430)
Q Consensus 342 V~~~~~L~ 349 (430)
|..-..+.
T Consensus 168 VYlDPMfp 175 (250)
T PRK10742 168 VYLDPMFP 175 (250)
T ss_pred EEECCCCC
Confidence 99955553
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=87.98 E-value=1.1 Score=45.89 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=65.1
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChh---------HHHHHHhcCC----eeEEEcccccCCC-CCCceeEEE
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGP---------FNSFIASRGL----ISMHISVSQRLPF-FENTLDIVH 343 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~---------~le~a~~rg~----i~~~~~d~~~lpf-~d~sfDlV~ 343 (430)
.+|.|-=.|||++....+.-|+-|+|.|||..-. .-..-++-|. +.++.+|...-|+ ....||.|+
T Consensus 210 divyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDaIv 289 (421)
T KOG2671|consen 210 DIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDAIV 289 (421)
T ss_pred CEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceeeEEE
Confidence 4479999999999998888899999998875211 1112223343 5667778776664 356899999
Q ss_pred Eccchh-----------------------hcCC-------chhHHHHHHHHHHhccCCcEEEE
Q 043503 344 SMHVLS-----------------------NWIP-------DSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 344 ~~~~L~-----------------------~~~~-------d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
|-.... .+.| .......|.=..|+|.-||.+++
T Consensus 290 cDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~ 352 (421)
T KOG2671|consen 290 CDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVF 352 (421)
T ss_pred eCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEE
Confidence 921110 0111 11344566678899999999875
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.61 E-value=19 Score=34.80 Aligned_cols=127 Identities=12% Similarity=0.068 Sum_probs=75.3
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCCh--hHHHHHHhcCC---eeEEEcccccCCC-CCC
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDG--PFNSFIASRGL---ISMHISVSQRLPF-FEN 337 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~--~~le~a~~rg~---i~~~~~d~~~lpf-~d~ 337 (430)
..+....+.+.. +.||||--|.++.++.+.+ .++++.|+..++ .......+.++ +....+|.-. ++ .+.
T Consensus 8 ~~va~~V~~~~~--iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~~~d 84 (226)
T COG2384 8 TTVANLVKQGAR--IADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLELED 84 (226)
T ss_pred HHHHHHHHcCCc--eeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccCccC
Confidence 344444443332 5999999999999999985 466666554433 12233334455 5555555411 23 344
Q ss_pred ceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 338 TLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 338 sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.+|+|+....-.. ....+|.+-..-|+-=-.|++ .+......+.+.+...+|.+....
T Consensus 85 ~~d~ivIAGMGG~-----lI~~ILee~~~~l~~~~rlIL-----QPn~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 85 EIDVIVIAGMGGT-----LIREILEEGKEKLKGVERLIL-----QPNIHTYELREWLSANSYEIKAET 142 (226)
T ss_pred CcCEEEEeCCcHH-----HHHHHHHHhhhhhcCcceEEE-----CCCCCHHHHHHHHHhCCceeeeee
Confidence 7898887433322 255677777777763334554 222334667888888998876544
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.43 E-value=1.1 Score=48.15 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=70.5
Q ss_pred ccEEEEEcCCccHHHHHHHH------cCCEEEEEecCCCh-hHHHHHHh---cCCeeEEEcccccCCCCCCceeEEEEcc
Q 043503 277 IRIGLDIGGGTGTFAARMRE------RNVTIITTSLNLDG-PFNSFIAS---RGLISMHISVSQRLPFFENTLDIVHSMH 346 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~------~g~~Vv~vdiD~s~-~~le~a~~---rg~i~~~~~d~~~lpf~d~sfDlV~~~~ 346 (430)
+.+++=+|+|-|-+..+..+ +.++++++.-++.+ .+++...- .+.+.++..|++.++-|..+.|++++ .
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-E 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-E 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-H
Confidence 45678899999977554433 35777888555443 23333221 14589999999999865689999998 6
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
.|..+.+.+.-.+-|..+.+.|||.|..+=
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 666656555566789999999999998763
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=86.95 E-value=5.1 Score=43.32 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=58.7
Q ss_pred cEEEEEcCCcc-HHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEccc-c----------cCC----------C
Q 043503 278 RIGLDIGGGTG-TFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVS-Q----------RLP----------F 334 (430)
Q Consensus 278 r~VLDIGcGtG-~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~-~----------~lp----------f 334 (430)
.+|+=+|+|.- ..++..+.. |++|+++ |.++..++.+++-|- .++..+. + .+. +
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~--D~~~~rle~aeslGA-~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAF--DTRPEVAEQVESMGA-EFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHcCC-eEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 45699999985 455556655 8988887 666777888887765 2221111 1 011 0
Q ss_pred CC--CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 335 FE--NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 335 ~d--~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.+ +.+|+|+..-.... .+. ...+..++.+.+||||.++...
T Consensus 243 ~~~~~gaDVVIetag~pg-~~a--P~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 243 AEQAKEVDIIITTALIPG-KPA--PKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HhccCCCCEEEECCCCCc-ccC--cchHHHHHHHhcCCCCEEEEEc
Confidence 11 46999999543311 111 2223599999999999987643
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=86.73 E-value=4.2 Score=39.98 Aligned_cols=125 Identities=13% Similarity=0.211 Sum_probs=71.8
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC---CCCCceeEEEEccchhhc----
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP---FFENTLDIVHSMHVLSNW---- 351 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp---f~d~sfDlV~~~~~L~~~---- 351 (430)
+++|+=||.|.+...+.+.|.+++.. +|+++...+.-+.+-. ....+|...+. ++. .+|+++....--.+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a-~e~~~~a~~~y~~N~~-~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag 78 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWA-VEIDPDACETYKANFP-EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAG 78 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEE-EESSHHHHHHHHHHHT-EEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTS
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEE-eecCHHHHHhhhhccc-ccccccccccccccccc-cceEEEeccCCceEeccc
Confidence 46999999999999999999766543 3555655555444433 67777877665 443 59999984221111
Q ss_pred ----CCc--hhHHHHHHHHHHhccCCcEEEEee---cccc-CcCcHHHHHHHHHHcCCEEEEEEec
Q 043503 352 ----IPD--SMLEFTLYDIYRLLRPGGIFWLDR---FFCF-GSQLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 352 ----~~d--~~l~~~L~ei~RvLrPGG~lvl~~---f~~~-~~~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
..+ ..+-.-+.++.+.++|.- |++.. +... .....+.+...+++.||.+....+.
T Consensus 79 ~~~~~~d~r~~L~~~~~~~v~~~~Pk~-~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vln 143 (335)
T PF00145_consen 79 KRKGFDDPRNSLFFEFLRIVKELKPKY-FLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVLN 143 (335)
T ss_dssp THHCCCCHTTSHHHHHHHHHHHHS-SE-EEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cccccccccchhhHHHHHHHhhccceE-EEecccceeeccccccccccccccccccceeehhcccc
Confidence 111 123344555666678854 33322 1111 1124567888999999987644433
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.25 E-value=3.7 Score=41.20 Aligned_cols=91 Identities=10% Similarity=0.063 Sum_probs=54.7
Q ss_pred cEEEEEcCC-ccHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEc---ccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGG-TGTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHIS---VSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcG-tG~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~---d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+||=+|+| .|.++..+++. |+ +|+++ +.++.-++.+++-|.-.++.. +...+....+.+|+|+..-.-
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~--~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~--- 245 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCA--DVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH--- 245 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEE--eCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC---
Confidence 345667764 34566666665 77 57777 555677788877775333221 111111112358998874211
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
...+....++|++||.+++...
T Consensus 246 ------~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 246 ------PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ------HHHHHHHHHHhhcCCEEEEEcc
Confidence 2356788889999999988654
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.57 E-value=5 Score=42.17 Aligned_cols=116 Identities=14% Similarity=0.088 Sum_probs=64.4
Q ss_pred EEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHH----HHHHhcCCeeEE--EcccccCC---CCCCceeEEEE--
Q 043503 279 IGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFN----SFIASRGLISMH--ISVSQRLP---FFENTLDIVHS-- 344 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~l----e~a~~rg~i~~~--~~d~~~lp---f~d~sfDlV~~-- 344 (430)
+|||+.+-.|.=+.++|.. ...|++. |.+.+-+ +.+..-|.-..+ ..|...+| |+. +||-|+.
T Consensus 244 RIlDmcAAPGGKTt~IAalMkn~G~I~An--D~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLLDA 320 (460)
T KOG1122|consen 244 RILDMCAAPGGKTTHIAALMKNTGVIFAN--DSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLLDA 320 (460)
T ss_pred eecchhcCCCchHHHHHHHHcCCceEEec--ccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeeecC
Confidence 3499999888554444443 3345665 4444433 333344663333 34555555 444 8999985
Q ss_pred --cc--chh-----hcCC--------chhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHc
Q 043503 345 --MH--VLS-----NWIP--------DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRI 397 (430)
Q Consensus 345 --~~--~L~-----~~~~--------d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~ 397 (430)
+. +.. .+.. .....++|......++|||+++.++=....++-...+...+.+.
T Consensus 321 PCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~ 390 (460)
T KOG1122|consen 321 PCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKR 390 (460)
T ss_pred CCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhC
Confidence 22 110 0000 01356788889999999999998863322222223455556665
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=84.25 E-value=0.93 Score=41.67 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=44.5
Q ss_pred CCCceeEEEEccchhhcC---------CchhHHHHHHHHHHhccCCcEEEEeeccccCcC------cHHHHHHHHHHcCC
Q 043503 335 FENTLDIVHSMHVLSNWI---------PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ------LNETYVPMLDRIGF 399 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~---------~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~------~~~~~~~ll~~~Gf 399 (430)
..++||.+.|..+++|.- |.+ -...+.++.++|||||.+++.-.+..+.- ......-..--.||
T Consensus 60 y~~~fD~~as~~siEh~GLGRYGDPidp~G-dl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gf 138 (177)
T PF03269_consen 60 YAGSFDFAASFSSIEHFGLGRYGDPIDPIG-DLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGF 138 (177)
T ss_pred hhccchhhheechhccccccccCCCCCccc-cHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCc
Confidence 357899999988886632 222 34678899999999999999865543211 11112222334788
Q ss_pred EEEEE
Q 043503 400 KKLRW 404 (430)
Q Consensus 400 k~l~~ 404 (430)
+.+..
T Consensus 139 e~i~t 143 (177)
T PF03269_consen 139 EWIDT 143 (177)
T ss_pred EEEee
Confidence 87764
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.10 E-value=1.1 Score=44.57 Aligned_cols=95 Identities=15% Similarity=0.213 Sum_probs=53.4
Q ss_pred cEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHH-----------HHH--hc---CCeeEEEcccccCCC-CCC--
Q 043503 278 RIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNS-----------FIA--SR---GLISMHISVSQRLPF-FEN-- 337 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le-----------~a~--~r---g~i~~~~~d~~~lpf-~d~-- 337 (430)
++|||+|||.|.-.+.....+ +.+..- |.++..++ .+. +. +...+......++-+ ..+
T Consensus 118 k~vLELgCg~~Lp~i~~~~~~~~~~~fq--D~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~~ 195 (282)
T KOG2920|consen 118 KRVLELGCGAALPGIFAFVKGAVSVHFQ--DFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTERT 195 (282)
T ss_pred ceeEecCCcccccchhhhhhccceeeeE--ecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcccc
Confidence 567999999998888888776 566655 33333221 111 11 112222221111111 122
Q ss_pred ceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 338 TLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 338 sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
.||+|.++-.+.. .+. ....+.......++++|.+++
T Consensus 196 ~ydlIlsSetiy~-~~~-~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 196 HYDLILSSETIYS-IDS-LAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred chhhhhhhhhhhC-cch-hhhhHhhhhhhcCCccchhhh
Confidence 7899999877744 222 222236777788889998876
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=83.00 E-value=8.5 Score=42.74 Aligned_cols=74 Identities=18% Similarity=0.129 Sum_probs=46.4
Q ss_pred eEEEccccc-CCCCCCceeEEEEccchhh-cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCE
Q 043503 323 SMHISVSQR-LPFFENTLDIVHSMHVLSN-WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFK 400 (430)
Q Consensus 323 ~~~~~d~~~-lpf~d~sfDlV~~~~~L~~-~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk 400 (430)
.++.+|+.. ++--+..+|+++.- .+.. -.|+-=-..++..+.|.++|||.|.-. .. ...+..-+..+||+
T Consensus 150 ~l~~gd~~~~~~~~~~~~d~~~lD-~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~--t~-----a~~vr~~l~~~GF~ 221 (662)
T PRK01747 150 DLWFGDANELLPQLDARADAWFLD-GFAPAKNPDMWSPNLFNALARLARPGATLATF--TS-----AGFVRRGLQEAGFT 221 (662)
T ss_pred EEEecCHHHHHHhccccccEEEeC-CCCCccChhhccHHHHHHHHHHhCCCCEEEEe--eh-----HHHHHHHHHHcCCe
Confidence 355567543 33223569999983 2211 011111246999999999999988642 21 35577889999999
Q ss_pred EEEE
Q 043503 401 KLRW 404 (430)
Q Consensus 401 ~l~~ 404 (430)
+.+.
T Consensus 222 v~~~ 225 (662)
T PRK01747 222 VRKV 225 (662)
T ss_pred eeec
Confidence 8764
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.71 E-value=7.4 Score=40.23 Aligned_cols=118 Identities=16% Similarity=0.180 Sum_probs=65.5
Q ss_pred EEEEEcCCccHHHHHHHHcCC------EEEEEecCCC-hhHHHHHHhc---CCeeEEEcccccCC---------CCCCce
Q 043503 279 IGLDIGGGTGTFAARMRERNV------TIITTSLNLD-GPFNSFIASR---GLISMHISVSQRLP---------FFENTL 339 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~------~Vv~vdiD~s-~~~le~a~~r---g~i~~~~~d~~~lp---------f~d~sf 339 (430)
+|||+.+-.|.=++.|.+... .|++-|+|.. ..|+.....+ ....+...++..+| .....|
T Consensus 158 ~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~f 237 (375)
T KOG2198|consen 158 KVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLKF 237 (375)
T ss_pred eeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhhhc
Confidence 459999999988887877632 5666655432 1343333333 11222222333333 123469
Q ss_pred eEEEEc-------------cchhh-cCCc------hhHHHHHHHHHHhccCCcEEEEeeccccCcCc--HHHHHHHHHHc
Q 043503 340 DIVHSM-------------HVLSN-WIPD------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQL--NETYVPMLDRI 397 (430)
Q Consensus 340 DlV~~~-------------~~L~~-~~~d------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~--~~~~~~ll~~~ 397 (430)
|-|+|- ..... |... .....+|..-.+.||+||.++.++ |.-... ...+..+++..
T Consensus 238 DrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST--CSLnpieNEaVV~~~L~~~ 315 (375)
T KOG2198|consen 238 DRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST--CSLNPIENEAVVQEALQKV 315 (375)
T ss_pred ceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec--cCCCchhhHHHHHHHHHHh
Confidence 999981 01101 2111 124568899999999999999986 533332 23455566554
Q ss_pred C
Q 043503 398 G 398 (430)
Q Consensus 398 G 398 (430)
|
T Consensus 316 ~ 316 (375)
T KOG2198|consen 316 G 316 (375)
T ss_pred c
Confidence 4
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.62 E-value=4 Score=40.00 Aligned_cols=98 Identities=16% Similarity=0.313 Sum_probs=63.0
Q ss_pred cCCCCCccEEEEEcCCccHHHHHHHHc-C--CEEEEEecCC-C-hhHHHHHHhcCC-eeEEEccccc---CCCCCCceeE
Q 043503 271 MKPLGTIRIGLDIGGGTGTFAARMRER-N--VTIITTSLNL-D-GPFNSFIASRGL-ISMHISVSQR---LPFFENTLDI 341 (430)
Q Consensus 271 ~~p~~~ir~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~-s-~~~le~a~~rg~-i~~~~~d~~~---lpf~d~sfDl 341 (430)
+.|+.++ |=+|.++|+.-..+.+- | .-|+++.... + -..+.+|++|-+ ++++ -|+.- ..+.-.-.|+
T Consensus 154 ikpGsKV---LYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIi-EDArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 154 IKPGSKV---LYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPII-EDARHPAKYRMLVGMVDV 229 (317)
T ss_pred ecCCceE---EEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeee-ccCCCchheeeeeeeEEE
Confidence 4555554 99999999988888776 3 3466663322 1 245677777755 4444 44422 1122346788
Q ss_pred EEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
|++ .+- .|+ ....+..+..-.||+||.|+++
T Consensus 230 IFa-Dva---qpd-q~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 230 IFA-DVA---QPD-QARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred Eec-cCC---Cch-hhhhhhhhhhhhhccCCeEEEE
Confidence 888 222 244 4667778899999999999986
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=81.84 E-value=13 Score=37.84 Aligned_cols=94 Identities=17% Similarity=0.172 Sum_probs=62.9
Q ss_pred EEEEEcCCc-cHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhcCCeeEEEccccc------CCCCC-CceeEEEEccch
Q 043503 279 IGLDIGGGT-GTFAARMRER-N-VTIITTSLNLDGPFNSFIASRGLISMHISVSQR------LPFFE-NTLDIVHSMHVL 348 (430)
Q Consensus 279 ~VLDIGcGt-G~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~------lpf~d-~sfDlV~~~~~L 348 (430)
+|+=+|||. |.++..+++. | .+|+.+ |.++.-++.|++.+-........+. +.... ..+|+|+-.-..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~ 248 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGS 248 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCC
Confidence 679999998 6666666666 5 466666 7788889999885543333332221 01112 369999874331
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
...+..+.+++||||.+.+.......
T Consensus 249 ---------~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 249 ---------PPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ---------HHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 23788999999999999987766433
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=81.24 E-value=10 Score=38.12 Aligned_cols=92 Identities=15% Similarity=0.177 Sum_probs=55.7
Q ss_pred EEEEEcCCc-cHHHHHHHHc-CCEEEEEec-CCChhHHHHHHhcCCeeEEEcccccC--CCCCCceeEEEEccchhhcCC
Q 043503 279 IGLDIGGGT-GTFAARMRER-NVTIITTSL-NLDGPFNSFIASRGLISMHISVSQRL--PFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 279 ~VLDIGcGt-G~~a~~La~~-g~~Vv~vdi-D~s~~~le~a~~rg~i~~~~~d~~~l--pf~d~sfDlV~~~~~L~~~~~ 353 (430)
+||=+|+|. |.++..+++. |++|++++- +.++.-.+.+++.|.. .+....+.+ ....+.+|+|+-.-.-
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~-~v~~~~~~~~~~~~~~~~d~vid~~g~----- 248 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT-YVNSSKTPVAEVKLVGEFDLIIEATGV----- 248 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE-EecCCccchhhhhhcCCCCEEEECcCC-----
Confidence 447777754 5677777766 888888753 2255666777766653 221111110 0012468988874211
Q ss_pred chhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
...+.+..++|++||.+++....
T Consensus 249 ----~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 249 ----PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred ----HHHHHHHHHHccCCcEEEEEecC
Confidence 13577888999999999876544
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.83 E-value=7.5 Score=35.46 Aligned_cols=107 Identities=13% Similarity=0.107 Sum_probs=60.1
Q ss_pred HHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHh----cCC---eeEEEcccccCCCC
Q 043503 264 GIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIAS----RGL---ISMHISVSQRLPFF 335 (430)
Q Consensus 264 ~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~----rg~---i~~~~~d~~~lpf~ 335 (430)
.++.+++.+++.+-.+.+|+|.|.|.+-...++.| ..-+|++ ..+-.....+- .|. ..|..-|.-+..+.
T Consensus 60 Qv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvE--LNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~ 137 (199)
T KOG4058|consen 60 QVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVE--LNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR 137 (199)
T ss_pred HHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCcee--ccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence 36677777665554556999999999988888876 4556764 44433333322 122 45555555444444
Q ss_pred CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 336 ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 336 d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
|-.+=+|+-. ...+++ +-.++..-++.+-.++-..|-
T Consensus 138 dy~~vviFga---es~m~d-----Le~KL~~E~p~nt~vvacRFP 174 (199)
T KOG4058|consen 138 DYRNVVIFGA---ESVMPD-----LEDKLRTELPANTRVVACRFP 174 (199)
T ss_pred ccceEEEeeh---HHHHhh-----hHHHHHhhCcCCCeEEEEecC
Confidence 4333333332 222333 344455567777777665544
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=80.70 E-value=12 Score=37.86 Aligned_cols=120 Identities=16% Similarity=0.208 Sum_probs=72.1
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCC-eeEEEcccccCCC---CCCceeEEEEccchhhc---
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGL-ISMHISVSQRLPF---FENTLDIVHSMHVLSNW--- 351 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~-i~~~~~d~~~lpf---~d~sfDlV~~~~~L~~~--- 351 (430)
+++|+=||.|.+...+.+.|++++.. +|+++...+.-+.+.. ..+...|...+.. ....+|+++....--.+
T Consensus 5 ~~idLFsG~GG~~lGf~~agf~~~~a-~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~a 83 (328)
T COG0270 5 KVIDLFAGIGGLSLGFEEAGFEIVFA-NEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSIA 83 (328)
T ss_pred eEEeeccCCchHHHHHHhcCCeEEEE-EecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchhhc
Confidence 56999999999999998889887754 4666655554444433 3455555543331 11178999984321111
Q ss_pred -----CCc--hhHHHHHHHHHHhccCCcEEEEee---ccccCcCcHHHHHHHHHHcCCE
Q 043503 352 -----IPD--SMLEFTLYDIYRLLRPGGIFWLDR---FFCFGSQLNETYVPMLDRIGFK 400 (430)
Q Consensus 352 -----~~d--~~l~~~L~ei~RvLrPGG~lvl~~---f~~~~~~~~~~~~~ll~~~Gfk 400 (430)
..| ..+-.-+.++...++| -.|++.. +........+.+.+.+++.||.
T Consensus 84 G~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 84 GKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG 141 (328)
T ss_pred CcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence 111 2233456667777788 4444321 1111223567899999999997
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=80.47 E-value=2.1 Score=44.48 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=49.4
Q ss_pred CCeeEEEcccccCC--CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 320 GLISMHISVSQRLP--FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 320 g~i~~~~~d~~~lp--f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
..+.++.+++...- .+++++|.++.+..+ .|++++.....+.++.|.++|||.+++-.+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~-Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~ 336 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHM-DWMDPEQLNEEWQELARTARPGARVLWRSAA 336 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchh-hhCCHHHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence 34788888765432 468999999999888 6888888999999999999999999886655
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=80.11 E-value=5.5 Score=40.36 Aligned_cols=77 Identities=18% Similarity=0.035 Sum_probs=49.4
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-----CCeeEEEcccccCC-----
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-----GLISMHISVSQRLP----- 333 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-----g~i~~~~~d~~~lp----- 333 (430)
++++..+......+.+|.--|.|..+..++++ +.+++++|- ++.+++.++++ +.+.++.+++..+.
T Consensus 10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~Dr--D~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDR--DPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES---HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHH
T ss_pred HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecC--CHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHH
Confidence 34443333333345799999999999999987 688998854 57778888766 34788888776654
Q ss_pred C-CCCceeEEEE
Q 043503 334 F-FENTLDIVHS 344 (430)
Q Consensus 334 f-~d~sfDlV~~ 344 (430)
. .-..+|.|+.
T Consensus 88 ~~~~~~~dgiL~ 99 (310)
T PF01795_consen 88 LNGINKVDGILF 99 (310)
T ss_dssp TTTTS-EEEEEE
T ss_pred ccCCCccCEEEE
Confidence 2 3357888887
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 3e-10
Identities = 22/128 (17%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 281 LDIGGGTGTFAARMRERNVTIITTSLN---LDGPFNSFIA-SRGLISMHISVSQRLPFFE 336
LD+GGGTG ++ ++ER ++ + L+ +A +G+ ++ + ++ LPF
Sbjct: 59 LDLGGGTGKWSLFLQERGFEVVLVDPSKEMLE------VAREKGVKNVVEAKAEDLPFPS 112
Query: 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDR 396
+ V ++ + +++ + + +I R+L P G+ + M+++
Sbjct: 113 GAFEAVLALGDVLSYVEN--KDKAFSEIRRVLVPDGLL----IATVDN-FYTFLQQMIEK 165
Query: 397 IGFKKLRW 404
+ ++
Sbjct: 166 DAWDQITR 173
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 7e-10
Identities = 27/159 (16%), Positives = 55/159 (34%), Gaps = 23/159 (14%)
Query: 268 VLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLISMH 325
+L + LDIG +G A ++E V+ I P + A L +
Sbjct: 25 LLKHIKKEWKEV-LDIGCSSGALGAAIKENGTRVSGIEAF-----PEAAEQAKEKLDHVV 78
Query: 326 ISV--SQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383
+ + +P+ E D V VL + D + + ++ G+
Sbjct: 79 LGDIETMDMPYEEEQFDCVIFGDVLE-HLFD--PWAVIEKVKPYIKQNGVILA------- 128
Query: 384 SQLNETYVPMLDRIGFKKLRWNVGMKLDRGVKKNEWYFS 422
S N +++ +L + + LD+ + +F+
Sbjct: 129 SIPNVSHISVLAPLLAGNWTYTEYGLLDKT---HIRFFT 164
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 7e-10
Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 16/127 (12%)
Query: 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLN-LDGPFNSFIASRGLIS 323
+ V + P G ++IG GTG FA ++ + S + IA + +
Sbjct: 39 LQAVKCLLPEGRG---VEIGVGTGRFAVPLKI--KIGVEPSERMAE------IARKRGVF 87
Query: 324 MHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383
+ ++ LP + + D + + D E L + YR+L+ GG +
Sbjct: 88 VLKGTAENLPLKDESFDFALMVTTICFV-DD--PERALKEAYRILKKGGYLIVG-IVDRE 143
Query: 384 SQLNETY 390
S L Y
Sbjct: 144 SFLGREY 150
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 1e-09
Identities = 32/153 (20%), Positives = 53/153 (34%), Gaps = 15/153 (9%)
Query: 281 LDIGGGTGTFAARMRERNVTIITTSLN-LDGPFNSFIASRGLISMHISV--SQRLPFFEN 337
L++G GTG + R+ + S L + R + LPF
Sbjct: 41 LEVGAGTGYWLRRLPYPQKVGVEPSEAMLA------VGRRRAPEATWVRAWGEALPFPGE 94
Query: 338 TLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRI 397
+ D+V L + D +E L + R+LRPGG + S Y + ++
Sbjct: 95 SFDVVLLFTTLEF-VED--VERVLLEARRVLRPGGALVV-GVLEALSPWAALYRRLGEKG 150
Query: 398 G--FKKLRWNVGMKLDRGVKKNEWYFSAVLEKP 428
+ + R+ L + E AV P
Sbjct: 151 VLPWAQARFLAREDLKALLGPPEAEGEAVFLAP 183
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 5e-09
Identities = 27/162 (16%), Positives = 52/162 (32%), Gaps = 27/162 (16%)
Query: 250 EKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLN 307
++ R L G YG +++ +I LD G G G + ++ +V
Sbjct: 21 QRWRNLAAAGNDIYGEARLIDAMAPRGAKI-LDAGCGQGRIGGYLSKQGHDVL------G 73
Query: 308 LDGPFNSFIASRGLISM------HISVSQ----RLPFFENTLDIVHSMHVLSNWIPDSML 357
D LI E D++ S + ++ +
Sbjct: 74 TD-------LDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGR 126
Query: 358 EFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGF 399
E L +I+R L G + F + ++ + +R+G
Sbjct: 127 EPALANIHRALGADGRAVIG-FGAGRGWVFGDFLEVAERVGL 167
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 6e-09
Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 10/100 (10%)
Query: 281 LDIGGGTGT---FAARMRERNVTIITTSLNLDGPFNSFIASRGL---ISMHISVSQRLPF 334
DIG GTG A VT + FN GL ++ + LPF
Sbjct: 51 ADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF 110
Query: 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIF 374
LD++ S + N + L + + L+ GG
Sbjct: 111 RNEELDLIWSEGAIYNIGFERGLN----EWRKYLKKGGYL 146
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 8e-09
Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 16/123 (13%)
Query: 281 LDIGGGTGTFAARMRER--NVTIITTSLN-LDGPFNSFIASRGLISMHISVSQ----RLP 333
LD+G G G ++ + S + +S + LP
Sbjct: 58 LDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQ------KGKERGEGPDLSFIKGDLSSLP 111
Query: 334 FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPM 393
F + + +++ L W + L +I R+L+ G + +Y +
Sbjct: 112 FENEQFEAIMAINSL-EWTEE--PLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRL 168
Query: 394 LDR 396
+
Sbjct: 169 YGK 171
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 8e-09
Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 21/144 (14%)
Query: 281 LDIGGGTGTFAARMRERNVTIITTSLN---LDGPFNSFIASRGLISMHISVS------QR 331
L++G GTG A + R I + L+ + + + + V +
Sbjct: 44 LELGVGTGRIALPLIARGYRYIALDADAAMLE------VFRQKIAGVDRKVQVVQADARA 97
Query: 332 LPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGG---IFWLDRFFCFGSQLNE 388
+P + ++ V +H+ +PD L + R+L+PGG W L E
Sbjct: 98 IPLPDESVHGVIVVHLWH-LVPD--WPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQE 154
Query: 389 TYVPMLDRIGFKKLRWNVGMKLDR 412
+ GF R +L
Sbjct: 155 RWRAFAAEEGFPVERGLHAKRLKE 178
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-08
Identities = 26/166 (15%), Positives = 60/166 (36%), Gaps = 24/166 (14%)
Query: 269 LSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLN-LDGPFNSFIASRGLISMH 325
+ G I +D G G G + + E + I ++ L S+
Sbjct: 13 IFEGKKGVI---VDYGCGNGFYCKYLLEFATKLYCIDINVIALK------EVKEKFDSV- 62
Query: 326 ISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC--FG 383
I++S +N++D + + + + D + + ++ R+L+ G R +
Sbjct: 63 ITLSDPKEIPDNSVDFILFANSF-HDMDD--KQHVISEVKRILKDDG-----RVIIIDWR 114
Query: 384 SQLNETYVPMLDRIGFKKLR-WNVGMKLDRGVKKNEWYFSAVLEKP 428
+ P+ R+ K W +++ ++F VL++
Sbjct: 115 KENTGIGPPLSIRMDEKDYMGWFSNFVVEKRFNPTPYHFGLVLKRK 160
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-08
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 281 LDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASRGL---ISMHISVSQRLPF 334
+DIG G G + + ++ ++ + S +++ IA L I + +P
Sbjct: 48 IDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI 107
Query: 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376
+N D++ S + W D + +IYR+L+ GG ++
Sbjct: 108 EDNYADLIVSRGSVFFW-ED--VATAFREIYRILKSGGKTYI 146
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 5e-08
Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 10/100 (10%)
Query: 281 LDIGGGTGTFA---ARMRERNVTIITTSLNLDGPFNSFIASRGL---ISMHISVSQRLPF 334
DIG GTG A + +T I + FN + LPF
Sbjct: 51 ADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF 110
Query: 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIF 374
LD++ S + N I E + + + L+ GG
Sbjct: 111 QNEELDLIWSEGAIYN-IGF---ERGMNEWSKYLKKGGFI 146
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 6e-08
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 5/97 (5%)
Query: 281 LDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRL-PFFENTL 339
LDIG G G F +E + I +N + + L + L
Sbjct: 46 LDIGCGRGEFLELCKEEGIESIGVDIN---EDMIKFCEGKFNVVKSDAIEYLKSLPDKYL 102
Query: 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376
D V H + + + L L Y ++ +
Sbjct: 103 DGVMISHFVEH-LDPERLFELLSLCYSKMKYSSYIVI 138
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 6e-08
Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 25/152 (16%)
Query: 262 DYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGL 321
+ D + + + L+ G GTG ++ T+ ++ SR +
Sbjct: 32 AHYEDILEDVVNKSFGNV-LEFGVGTGNLTNKLLLAGRTVYG----IE-------PSREM 79
Query: 322 ISM-------HISVSQ----RLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRP 370
+ S+++ ++D + S + + + D + +LL
Sbjct: 80 RMIAKEKLPKEFSITEGDFLSFEV-PTSIDTIVSTYAF-HHLTDDEKNVAIAKYSQLLNK 137
Query: 371 GGIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402
GG + V + GF +L
Sbjct: 138 GGKIVFADTIFADQDAYDKTVEAAKQRGFHQL 169
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 6e-08
Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 20/113 (17%)
Query: 281 LDIGGGTGTFAARMRERNVTIITTSLN-----------LDGPFNSFIASRGLISMHISVS 329
LDIG G+G + + + ++ +N N + + +
Sbjct: 35 LDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGK--AEFKVENA 92
Query: 330 QRLPFFENTLDIVHSMHVLSNWIPD-SMLEFTLYDIYRLLRPGGIFWLDRFFC 381
L F +++ D L++ +PD + +++R+L+PG +
Sbjct: 93 SSLSFHDSSFDFAVMQAFLTS-VPDPKERSRIIKEVFRVLKPGA-----YLYL 139
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 7e-08
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 281 LDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGL--ISMHISVSQRLPFFE 336
LDIG G G A + + + +SF +G+ + ++ LPF +
Sbjct: 26 LDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 85
Query: 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIF 374
++ DI+ + ++ D + + ++ R+L+ G F
Sbjct: 86 DSFDIITCRYAAHHF-SD--VRKAVREVARVLKQDGRF 120
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 7e-08
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 281 LDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGL--ISMHISVSQRLPFFE 336
LD+ G G A V + ++ +FI G + ++++PF +
Sbjct: 42 LDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101
Query: 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIF 374
IV ++ P+ + + YR+L+ GG
Sbjct: 102 ERFHIVTCRIAAHHF-PN--PASFVSEAYRVLKKGGQL 136
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 8e-08
Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 31/123 (25%)
Query: 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLI 322
++++ + G + L++ GTG + + VT + D S +I
Sbjct: 38 LERLRAGNIRGDV---LELASGTGYWTRHLSGLADRVTAL------D-------GSAEMI 81
Query: 323 SM-------HISVSQ----RLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPG 371
+ ++ Q + D V H L+ +PD E + + PG
Sbjct: 82 AEAGRHGLDNVEFRQQDLFDWTP-DRQWDAVFFAHWLA-HVPDDRFEAFWESVRSAVAPG 139
Query: 372 GIF 374
G+
Sbjct: 140 GVV 142
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 9e-08
Identities = 18/112 (16%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISM 324
++ ++++ L + DIG GTG ++ + + + + ++ +
Sbjct: 23 VNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVY--AVEPSIVMRQQAVVHPQVEW 80
Query: 325 HISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376
++ L + ++D V S+ + + LE + ++ R++R G I L
Sbjct: 81 FTGYAENLALPDKSVDGVISILAI-HHFSH--LEKSFQEMQRIIRDGTIVLL 129
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 2e-07
Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 29/153 (18%)
Query: 281 LDIGGGTGTFAARMRERNVTIIT---TSLN-LDGPFNSFIASRGLISMHISVSQ----RL 332
LD+G G G E + S L A R S + Q +
Sbjct: 49 LDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLT------EAKRKTTSPVVCYEQKAIEDI 102
Query: 333 PFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVP 392
+ ++V S L ++I + +Y L+ G F S + +
Sbjct: 103 AIEPDAYNVVLSSLAL-HYIAS--FDDICKKVYINLKSSGSFIF-------SVEHPVFTA 152
Query: 393 MLDRIGFK-----KLRWNVGMKLDRGVKKNEWY 420
+ + KL W V + ++ + +
Sbjct: 153 DGRQDWYTDETGNKLHWPVDRYFNESMRTSHFL 185
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 2e-07
Identities = 29/183 (15%), Positives = 60/183 (32%), Gaps = 36/183 (19%)
Query: 263 YGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIA---SR 319
YG+ ++ I LD+G GTG +A + E+ P +F S
Sbjct: 32 YGVSVSIASVDTENPDI-LDLGAGTGLLSAFLMEKY------------PEATFTLVDMSE 78
Query: 320 GLISM---HISVSQRLPF---------FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRL 367
++ + + ++ + FE D+V S + + + D + Y +
Sbjct: 79 KMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSI-HHLEDEDKKELYKRSYSI 137
Query: 368 LRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMKLDRGVKKNEWYFSAVLEK 427
L+ GIF + I + + + + + Y + L+K
Sbjct: 138 LKESGIFI---NADLVHGETAFIENLNKTIWRQYVENSGLTEEE----IAAGYERSKLDK 190
Query: 428 PMT 430
+
Sbjct: 191 DIE 193
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 2e-07
Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 16/106 (15%)
Query: 281 LDIGGGTGTFAARMRER--NVTIITTSLN-LDGPFNSFIASRGLISMHISVS------QR 331
LD+ G G F+ + + V + S + + A S +V ++
Sbjct: 43 LDLACGVGGFSFLLEDYGFEVVGVDISEDMIR------KAREYAKSRESNVEFIVGDARK 96
Query: 332 LPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377
L F + T D V + + L ++ R+L+P G F +
Sbjct: 97 LSFEDKTFDYVIFIDSI-VHFEPLELNQVFKEVRRVLKPSGKFIMY 141
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 2e-07
Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 26/106 (24%)
Query: 281 LDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLISM------HISVSQ-- 330
LD+G GTG + + + + + + L+ + ++
Sbjct: 46 LDVGSGTGRWTGHLASLGHQIEGL------E-------PATRLVELARQTHPSVTFHHGT 92
Query: 331 --RLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIF 374
L + + + L + L L + + GG
Sbjct: 93 ITDLSDSPKRWAGLLAWYSL-IHMGPGELPDALVALRMAVEDGGGL 137
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 2e-07
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 281 LDIGGGTGTFAARMRERNVTIITTSLNLDGPF----NSFIASRGLISMHISVS--QRLPF 334
L+ G G G + + N TS+++ G+ ++ + LPF
Sbjct: 42 LEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPF 101
Query: 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIF 374
+++ D + VL + E L + ++L+PGG
Sbjct: 102 EDSSFDHIFVCFVL-EHLQS--PEEALKSLKKVLKPGGTI 138
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-07
Identities = 15/117 (12%), Positives = 35/117 (29%), Gaps = 4/117 (3%)
Query: 263 YGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR 319
G ++ P LD G G G + + ++ ++ +A
Sbjct: 80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM 139
Query: 320 GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376
+ ++ + NT D++ ++ D+ + L P G +
Sbjct: 140 PVGKFILASMETATLPPNTYDLIVIQWTA-IYLTDADFVKFFKHCQQALTPNGYIFF 195
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 3e-07
Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 281 LDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASRGL-ISMHISVSQRLPFFE 336
LD G G + I S +F +++ ++LPF +
Sbjct: 28 LDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKD 87
Query: 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377
++ V+S + + + + E + +I R+L+PGG+ ++
Sbjct: 88 ESMSFVYSYGTIFHMRKNDVKEA-IDEIKRVLKPGGLACIN 127
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 4e-07
Identities = 34/193 (17%), Positives = 64/193 (33%), Gaps = 40/193 (20%)
Query: 220 YSCKSYQCLIDRKKAPGFFDCK-DCFDLQGREKSRWLIDNGKLDYGIDQVLSMKPLGTIR 278
YS S ++ P F F Q ++ +D I + L +P
Sbjct: 18 YSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDR------IARDLRQRP--ASL 69
Query: 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENT 338
+ D G G A+ +R +L ++P + +
Sbjct: 70 VVADFGCGDCRLASSIRNPV-----HCFDLASLDPRVTVCDM---------AQVPLEDES 115
Query: 339 LDIVHSMHVL--SNWIPDSMLEFTLYDIYRLLRPGGIFWL----DRFFCFGSQLNETYVP 392
+D+ L +N D + E R+L+PGG+ + RF T++
Sbjct: 116 VDVAVFCLSLMGTNI-RDFLEE-----ANRVLKPGGLLKVAEVSSRFEDV-----RTFLR 164
Query: 393 MLDRIGFKKLRWN 405
+ ++GFK + +
Sbjct: 165 AVTKLGFKIVSKD 177
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 4e-07
Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 22/155 (14%)
Query: 281 LDIGGGTGTFAARMRER---NVTIITTSLN-LDGPFNSFIASRGLISMHISVSQ----RL 332
+D+G G G F E V + S L A I+ + +L
Sbjct: 48 VDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLA------RARAAGPDTGITYERADLDKL 101
Query: 333 PFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF-CFGSQLNETYV 391
+++ D+ +S L +++ D + +++ L PGG F + + +
Sbjct: 102 HLPQDSFDLAYSSLAL-HYVED--VARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWA 158
Query: 392 PMLDRIGFKKLRWNVGMKLDRGVKKNEWYFSAVLE 426
+ W + L G +K +W V++
Sbjct: 159 ----IDAEGRRTWPIDRYLVEGPRKTDWLAKGVVK 189
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 6e-07
Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 32/152 (21%)
Query: 281 LDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASRGLISMHISVSQ----RLP 333
LD+G G G A R+ VT I+ S N+ + GL + ++ S LP
Sbjct: 66 LDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL-ANRVTFSYADAMDLP 124
Query: 334 FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIF----------------WLD 377
F + + D V ++ L + +PD L ++ R+LRPGG
Sbjct: 125 FEDASFDAVWALESLHH-MPD--RGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAV 181
Query: 378 RFFCFGSQLN-----ETYVPMLDRIGFKKLRW 404
F G + + Y + +
Sbjct: 182 DAFRAGGGVLSLGGIDEYESDVRQAELVVTST 213
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 7e-07
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 20/103 (19%)
Query: 281 LDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIA-------SRGLISMHISVSQR 331
LD+G G G + +R + L + ++ + +++
Sbjct: 57 LDLGCGEGWLLRALADRGIEAVGVDGDRTL-------VDAARAAGAGEVHLASYAQLAEA 109
Query: 332 LPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIF 374
D++ + L D + L + LL PGG
Sbjct: 110 KVPVGKDYDLICANFAL--LHQD--IIELLSAMRTLLVPGGAL 148
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 7e-07
Identities = 33/194 (17%), Positives = 66/194 (34%), Gaps = 49/194 (25%)
Query: 260 KLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARM----RERNVTIITTSLNLDGPFNSF 315
KL I ++ K I+I L IGGG G ++ + + + + ++ P
Sbjct: 39 KLPGIIGRIGDTKS--EIKI-LSIGGGAGEIDLQILSKVQAQYPGVCINNEVVE-PSAEQ 94
Query: 316 IA--------SRGLISMHISVSQ----------RLPFFENTLDIVHSMHVLSNWIPDSML 357
IA + L ++ + + D +H + +L ++ D +
Sbjct: 95 IAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQML-YYVKD--I 151
Query: 358 EFTLYDIYRLLRPGGIF----------WLDRFFCFGSQLNETYVP----------MLDRI 397
TL + LL W + +GS+ + + MLD +
Sbjct: 152 PATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNL 211
Query: 398 GFKKLRWNVGMKLD 411
G K +++ +D
Sbjct: 212 GLKYECYDLLSTMD 225
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 1e-06
Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 29/166 (17%)
Query: 281 LDIGGGTGTFAARMRER--NVTIITTS---LNLDGPFNSFIASRGLISMHISVSQRLPFF 335
L++G G G A M +V S ASR L ++
Sbjct: 48 LELGCGAGYQAEAMLAAGFDVDATDGSPELAAE--------ASRRLGRPVRTMLFHQLDA 99
Query: 336 ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD-------------RFFCF 382
+ D V + L +P L L I+R L+PGG+F+ R++ +
Sbjct: 100 IDAYDAVWAHACL-LHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNY 158
Query: 383 GSQLNETYVPMLDRIGFKKLRWNVGMKLDRGVKKNEWYFSAVLEKP 428
S+ E G + ++ + + KP
Sbjct: 159 PSE--EWLRARYAEAGTWASVAVESSEGKGFDQELAQFLHVSVRKP 202
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 15/99 (15%)
Query: 281 LDIGGGTGTFAARMRER--NVTIITTSLN-LDGPFNSFIASRGLISMHISVS--QRLPFF 335
LD+G GTG ++ + V + ++ A + +H V+ +
Sbjct: 62 LDLGCGTGQLTEKIAQSGAEVLGTDNAATMIE------KARQNYPHLHFDVADARNFR-V 114
Query: 336 ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIF 374
+ LD V S +L +W+ + E + I++ L+ GG F
Sbjct: 115 DKPLDAVFSNAML-HWVKE--PEAAIASIHQALKSGGRF 150
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 19/168 (11%)
Query: 252 SRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-----NVTIITTSL 306
+ + + ++VL L LD+G G G + + + V I
Sbjct: 13 KKLDDPSRLELFDPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQE 72
Query: 307 NLDGPFNSFIASRGL--ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDI 364
+ + GL + + S ++P +NT+D + + + + L ++
Sbjct: 73 EMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTF-HELSE--PLKFLEEL 129
Query: 365 YRLLRPGGIF----WLDRFFCFGSQLNETY-----VPMLDRIGFKKLR 403
R+ +P W G E Y +L+ G + R
Sbjct: 130 KRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGR 177
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 3e-06
Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 11/126 (8%)
Query: 281 LDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASRGLISMHISVSQ----RLP 333
LD+G G G A + + ++ + + + + GL + +I+V +P
Sbjct: 87 LDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-ADNITVKYGSFLEIP 145
Query: 334 FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPM 393
+N+ D + S + PD + R+L+P G+ + + P+
Sbjct: 146 CEDNSYDFIWSQDAFLH-SPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPI 202
Query: 394 LDRIGF 399
LDRI
Sbjct: 203 LDRIKL 208
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 4e-06
Identities = 22/121 (18%), Positives = 32/121 (26%), Gaps = 31/121 (25%)
Query: 281 LDIGGGTGTFAARMRER--NVTIITTSLNL------DGPFNSFIASRGLISMHISVSQRL 332
L+ G G G AAR + S L + P + L
Sbjct: 53 LEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVY--------EWNGKGEL 104
Query: 333 PFFEN-TLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYV 391
P ++ S ++ I + L P F G +LN V
Sbjct: 105 PAGLGAPFGLIVSRRGPTSVILR---------LPELAAPDA-----HFLYVGPRLNVPEV 150
Query: 392 P 392
P
Sbjct: 151 P 151
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 5e-06
Identities = 17/128 (13%), Positives = 33/128 (25%), Gaps = 25/128 (19%)
Query: 261 LDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-----NVTIITTSLN-LDGPFNS 314
+ + ++ V + + I +D G G G + T I + L
Sbjct: 10 VSFLVNTVWKITK--PVHI-VDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLA----- 61
Query: 315 FIASRGLISMHISVS------QRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLL 368
A + + + DI L + E L + +
Sbjct: 62 -EARELFRLLPYDSEFLEGDATEIEL-NDKYDIAICHAFL-LHMTT--PETMLQKMIHSV 116
Query: 369 RPGGIFWL 376
+ GG
Sbjct: 117 KKGGKIIC 124
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 8e-06
Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 19/131 (14%)
Query: 248 GREKSRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITT 304
G E ++ ++ + +L+ +VL DIG G G + E+ + I
Sbjct: 40 GLEATKKILSDIELNEN-SKVL------------DIGSGLGGGCMYINEKYGAHTHGIDI 86
Query: 305 SLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNW-IPDSMLEFTLYD 363
N+ N ++ I + F EN D+++S + + +
Sbjct: 87 CSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLEN--KNKLFQK 144
Query: 364 IYRLLRPGGIF 374
Y+ L+P G
Sbjct: 145 CYKWLKPTGTL 155
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 1e-05
Identities = 22/151 (14%), Positives = 41/151 (27%), Gaps = 19/151 (12%)
Query: 271 MKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPF----NSFIASRGLISMHI 326
LD G G G R+ + +++ F +++ G +
Sbjct: 74 GPNKTGTSCALDCGAGIGRITKRLLLPLFREVDM-VDITEDFLVQAKTYLGEEGKRVRNY 132
Query: 327 SVS--QRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL-------- 376
Q ++ D++ V+ + D L L LRP GI +
Sbjct: 133 FCCGLQDFTPEPDSYDVIWIQWVIGHL-TDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG 191
Query: 377 DRFFCFGSQLNET---YVPMLDRIGFKKLRW 404
S + ++ G L
Sbjct: 192 VILDDVDSSVCRDLDVVRRIICSAGLSLLAE 222
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 5e-05
Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 24/124 (19%)
Query: 281 LDIGGGTGTFAARMRER-----NVTIITTS--------LNLDGPFNSFIASRGLISM--- 324
LD+G GTG + V + ++ F S ++
Sbjct: 88 LDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFL 147
Query: 325 -----HISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379
+++ ++ ++++DIV S V N + +I+R+LR GG +
Sbjct: 148 KGFIENLATAEPEGVPDSSVDIVISNCVC-NLSTN--KLALFKEIHRVLRDGGELYFSDV 204
Query: 380 FCFG 383
+
Sbjct: 205 YADR 208
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 6e-05
Identities = 25/153 (16%), Positives = 51/153 (33%), Gaps = 28/153 (18%)
Query: 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTII-------------TTSLNLD 309
+ +L + LD+ GTG + + E +VT + + +
Sbjct: 49 LLGLLRQHGCHRV---LDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKE 105
Query: 310 GPFNSFIASRGLISMHISVSQRLPFFENTLDIV----HSM-HVLSNWIPDSMLEFTLYDI 364
F+ ++ + + + D V +S H+ + S L +I
Sbjct: 106 PAFDKWVIEE----ANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNI 161
Query: 365 YRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRI 397
++RPGG+ +D + L+ P I
Sbjct: 162 ASMVRPGGLLVID-HRNYDYILSTGCAPPGKNI 193
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 8e-05
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Query: 281 LDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLISMHISVS--QRLPFFE 336
LD+G G G + + +V + + L ++H V L F +
Sbjct: 37 LDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-D 95
Query: 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380
D + S VL ++ + + ++ R +PGG +
Sbjct: 96 RQYDFILSTVVL-MFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 138
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 4e-04
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 17/116 (14%)
Query: 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRER----NVTIITTSLN-LDGPFNSFIASRG 320
+L+ PL + G D+G G G + +R +T I + + L+ A+
Sbjct: 23 RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLE------KAADR 76
Query: 321 LISMHISVS--QRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIF 374
L + + + D++++ V W+PD L + L GG+
Sbjct: 77 LPNTNFGKADLATWK-PAQKADLLYANAVF-QWVPD--HLAVLSQLMDQLESGGVL 128
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 26/127 (20%)
Query: 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGP-----FNSFIASRG 320
D V + R +D+ GG GT+ A++ R+ + T D P I +
Sbjct: 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQL--TGQIWDLPTTRDAARKTIHAHD 226
Query: 321 LISMHISVSQRLP-----FFENTL------DIVHSMHVLSNWIPDSMLEFTLYDIYRLLR 369
L R+ + D+V L + E + L++
Sbjct: 227 L-------GGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREV-IGHAAGLVK 278
Query: 370 PGGIFWL 376
PGG +
Sbjct: 279 PGGALLI 285
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 8e-04
Identities = 63/433 (14%), Positives = 122/433 (28%), Gaps = 141/433 (32%)
Query: 42 LLSEFSSTKIELAASHGIIAELQQQLNSTNLLVQALLI---ELTREFVHPNEKVSGINLS 98
S S +I+ I + ++ T L LL E+ ++FV E+V IN
Sbjct: 42 PKSILSKEEID------HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV---EEVLRINYK 92
Query: 99 AVMSKLSDD------LTVGLPDEV-KLAVGPHKLPLGYSPR-------------MGSDEV 138
+MS + + +T ++ +L R + +
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 139 IAPVG-AGCSK--------FHDELLKYMTYDI-----GGECPVDDVFAQ------RLMLK 178
+ G G K ++ M + I + V ++
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 179 GCEPLPRRRCKPKSPVNYVEPTAVPDSLWEKPAETSII-----WDP-------YSCK--- 223
K ++ ++ + L KP E ++ + SCK
Sbjct: 213 WTS-RSDHSSNIKLRIHSIQ-AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 224 --SYQCLIDRKKAPGFFDCKDCFDLQGREK-------SRWL-IDNGKLDYGIDQVLSMKP 273
++ + D A ++L L +VL+ P
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP---REVLTTNP 327
Query: 274 LGTIRIGLDIGGGTGTFAARMRERNVT--------------IITTSLN-LDGP-----FN 313
R+ + A +R+ T II +SLN L+ F+
Sbjct: 328 R---RLSI--------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 314 SFIASRGLI---SMHISVSQRLPFF------ENTLDIVHSMHVLSNWIPDSMLE------ 358
+ S HI + L + + +V+ +H S ++E
Sbjct: 377 RLS-----VFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYS------LVEKQPKES 424
Query: 359 -FTLYDIYRLLRP 370
++ IY L+
Sbjct: 425 TISIPSIYLELKV 437
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.7 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.68 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.68 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.68 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.67 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.64 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.64 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.64 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.64 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.63 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.63 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.63 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.62 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.62 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.62 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.62 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.62 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.62 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.62 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.62 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.61 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.61 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.61 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.61 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.61 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.6 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.6 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.59 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.59 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.59 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.59 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.59 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.58 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.58 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.58 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.58 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.57 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.57 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.57 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.56 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.56 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.56 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.55 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.55 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.54 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.54 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.54 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.54 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.54 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.53 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.52 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.52 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.51 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.51 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.51 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.51 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.5 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.5 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.5 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.49 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.49 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.48 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.48 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.48 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.47 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.47 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.47 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.46 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.46 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.45 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.45 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.44 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.44 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.43 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.43 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.43 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.43 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.42 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.42 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.42 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.42 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.42 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.41 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.41 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.41 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.41 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.41 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.41 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.4 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.4 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.4 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.4 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.39 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.39 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.38 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.38 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.37 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.37 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.37 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.37 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.37 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.37 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.36 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.36 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.36 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.34 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.34 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.34 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.33 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.33 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.32 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.31 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.3 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.3 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.3 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.3 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.29 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.29 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.29 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.28 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.28 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.27 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.27 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.27 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.27 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.27 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.26 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.26 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.26 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.26 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.25 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.25 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.25 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.24 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.24 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.24 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.23 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.23 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.22 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.22 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.22 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.21 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.2 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.2 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.19 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.18 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.18 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.16 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.16 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.16 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.16 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.16 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.15 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.14 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.14 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.14 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.14 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.13 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.13 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.13 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.12 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.12 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.11 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.11 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.1 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.1 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.09 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.09 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.09 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.09 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.09 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.09 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.08 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.08 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.08 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.08 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.07 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.07 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.06 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.05 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.05 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.05 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.04 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.04 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.04 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.03 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.03 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.03 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.01 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.01 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.0 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.0 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.99 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.99 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.98 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.98 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.98 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.98 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.97 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.97 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.97 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.97 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.96 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.96 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.96 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.96 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.96 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.94 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.94 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.93 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.93 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.93 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.92 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.92 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.91 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.9 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.88 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.88 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.87 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.87 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.87 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.86 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.86 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.86 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.86 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.86 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.85 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.85 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.84 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.84 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.83 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.82 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.8 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.8 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.79 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.79 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.79 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.78 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.76 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.74 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.7 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.69 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.68 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.65 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.63 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.63 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.61 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.61 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.61 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.59 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.56 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.54 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.46 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.36 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.35 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.35 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.34 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.33 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.3 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.29 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.25 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.18 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.11 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.08 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.04 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.03 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.0 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.0 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.0 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.98 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.97 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.95 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.92 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.91 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.85 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.82 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.81 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.78 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.74 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.73 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.69 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.63 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.62 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.61 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.59 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.48 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.31 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.28 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.21 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.11 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.08 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.98 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 96.96 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 96.68 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.66 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.06 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 95.81 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 95.81 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.72 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 94.56 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 94.54 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 94.23 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.12 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 93.41 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 93.33 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 93.06 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 92.82 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 92.55 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 92.42 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 92.24 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 92.04 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 92.01 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 91.57 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 91.51 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.5 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 91.45 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 91.27 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 91.25 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 91.0 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 90.88 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 90.85 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 90.16 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 90.01 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 89.97 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 89.86 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 89.84 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 89.29 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 89.17 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 88.54 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 88.52 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 88.51 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 88.48 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 88.31 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 88.13 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 88.1 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 88.1 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 87.78 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 87.7 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 87.58 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 87.55 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 87.51 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 87.38 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 87.15 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 86.96 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 86.83 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 86.12 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 85.65 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 85.27 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 85.2 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 85.16 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 85.12 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 84.65 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 84.37 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 84.13 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 84.03 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 83.97 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 83.63 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 83.41 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 83.22 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 82.9 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 82.45 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 82.43 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 82.4 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 82.02 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 81.76 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 81.51 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 80.21 |
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-16 Score=149.11 Aligned_cols=127 Identities=17% Similarity=0.239 Sum_probs=102.9
Q ss_pred CccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccchh
Q 043503 276 TIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
...+|||+|||+|.++..+++++.+|+++ |+++.|++.++++ + .+.++++|++.+|+++++||+|++..+++
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~ 114 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVKKVVAF--DLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAH 114 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSSEEEEE--ESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCCEEEEE--eCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhhH
Confidence 33467999999999999999998899988 7788998887765 3 38899999999999999999999999995
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc---------------------CcHHHHHHHHHHcCCEEEEEEec
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS---------------------QLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~---------------------~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
+ .++ ...++.++.|+|||||+|++.++..... ...+.+..+++++||+.+.+...
T Consensus 115 ~-~~d--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 115 H-FPN--PASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp G-CSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred h-cCC--HHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 5 566 7899999999999999999975443211 12356888999999998776643
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.68 E-value=8e-16 Score=145.67 Aligned_cols=140 Identities=16% Similarity=0.168 Sum_probs=111.5
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhcC---CeeEEEcccccCCCCCCceeE
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASRG---LISMHISVSQRLPFFENTLDI 341 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~rg---~i~~~~~d~~~lpf~d~sfDl 341 (430)
..++..++.....+|||+|||+|.++..+++++. +|+++ |+++.+++.++++. .+.++.+|+..+++++++||+
T Consensus 34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGI--DLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEE--ECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 3445555544446679999999999999999977 89988 77789999988773 489999999999998999999
Q ss_pred EEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecccc------------C--c-----------------------
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF------------G--S----------------------- 384 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~------------~--~----------------------- 384 (430)
|++..++++ .++ ...++.++.|+|||||+++++..... . .
T Consensus 112 v~~~~~l~~-~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (253)
T 3g5l_A 112 VLSSLALHY-IAS--FDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGED 188 (253)
T ss_dssp EEEESCGGG-CSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEE
T ss_pred EEEchhhhh-hhh--HHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeecccc
Confidence 999999965 555 78999999999999999998632110 0 0
Q ss_pred -----CcHHHHHHHHHHcCCEEEEEEecccc
Q 043503 385 -----QLNETYVPMLDRIGFKKLRWNVGMKL 410 (430)
Q Consensus 385 -----~~~~~~~~ll~~~Gfk~l~~~~~~k~ 410 (430)
...+++..+++++||+++.+......
T Consensus 189 ~~~~~~t~~~~~~~l~~aGF~~~~~~e~~~~ 219 (253)
T 3g5l_A 189 VQKYHRTVTTYIQTLLKNGFQINSVIEPEPA 219 (253)
T ss_dssp EEEECCCHHHHHHHHHHTTEEEEEEECCCCC
T ss_pred CccEecCHHHHHHHHHHcCCeeeeeecCCCc
Confidence 03477999999999999987755443
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.1e-16 Score=145.30 Aligned_cols=139 Identities=19% Similarity=0.226 Sum_probs=113.7
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCCCce
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFENTL 339 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d~sf 339 (430)
++.++..++.....+|||+|||+|.++..++++ +.+|+++ |+++.+++.++++ ..+.++++|+..+++++++|
T Consensus 44 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 44 TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGI--DICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEE--ESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 456666555444557799999999999999998 8999998 7778999999887 35899999999999999999
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc------------------CcHHHHHHHHHHcCCEE
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS------------------QLNETYVPMLDRIGFKK 401 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~------------------~~~~~~~~ll~~~Gfk~ 401 (430)
|+|++..+++| ++......++.++.|+|||||++++.++..... ...+.+..+++++||+.
T Consensus 122 D~v~~~~~l~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 200 (266)
T 3ujc_A 122 DLIYSRDAILA-LSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKN 200 (266)
T ss_dssp EEEEEESCGGG-SCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEE
T ss_pred EEEeHHHHHHh-cChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeE
Confidence 99999999966 544458899999999999999999987654330 12456889999999998
Q ss_pred EEEEe
Q 043503 402 LRWNV 406 (430)
Q Consensus 402 l~~~~ 406 (430)
+....
T Consensus 201 ~~~~~ 205 (266)
T 3ujc_A 201 VVSKD 205 (266)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87653
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=148.17 Aligned_cols=128 Identities=9% Similarity=-0.053 Sum_probs=99.7
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc------------------CCeeEEEcccccCCCCC-Cc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR------------------GLISMHISVSQRLPFFE-NT 338 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r------------------g~i~~~~~d~~~lpf~d-~s 338 (430)
.+|||+|||+|.++..++++|.+|+++ |+|+.|++.|+++ ..+.++++|+..+++++ ++
T Consensus 24 ~~vLD~GCG~G~~~~~la~~g~~V~gv--D~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~ 101 (203)
T 1pjz_A 24 ARVLVPLCGKSQDMSWLSGQGYHVVGA--ELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGH 101 (203)
T ss_dssp CEEEETTTCCSHHHHHHHHHCCEEEEE--EECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHS
T ss_pred CEEEEeCCCCcHhHHHHHHCCCeEEEE--eCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCC
Confidence 456999999999999999999999998 7789999988765 24789999999999765 89
Q ss_pred eeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee-cccc----CcC---cHHHHHHHHHHcCCEEEEEEeccc
Q 043503 339 LDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR-FFCF----GSQ---LNETYVPMLDRIGFKKLRWNVGMK 409 (430)
Q Consensus 339 fDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~-f~~~----~~~---~~~~~~~ll~~~Gfk~l~~~~~~k 409 (430)
||+|++..++++ ++......++.++.|+|||||++++.. .+.. +.. ..+++..++.. ||++..+.....
T Consensus 102 fD~v~~~~~l~~-l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~~~~~ 178 (203)
T 1pjz_A 102 CAAFYDRAAMIA-LPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVGGQDT 178 (203)
T ss_dssp EEEEEEESCGGG-SCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEEESSC
T ss_pred EEEEEECcchhh-CCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEeccccc
Confidence 999999888854 555557789999999999999844332 2211 111 24678888888 999887665443
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.8e-16 Score=142.18 Aligned_cols=126 Identities=14% Similarity=0.108 Sum_probs=106.5
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcC-CeeEEEcccccCCCCCCceeEEEEccchhhcCCchhH
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRG-LISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSML 357 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg-~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l 357 (430)
+|||+|||+|.++..+++++.+|+++ |+++.+++.++++. .+.++.+|+..+++++++||+|++..+++| .+.+..
T Consensus 44 ~vLDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~~~~ 120 (203)
T 3h2b_A 44 VILDVGSGTGRWTGHLASLGHQIEGL--EPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIH-MGPGEL 120 (203)
T ss_dssp CEEEETCTTCHHHHHHHHTTCCEEEE--CCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTT-CCTTTH
T ss_pred eEEEecCCCCHHHHHHHhcCCeEEEE--eCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhc-CCHHHH
Confidence 35999999999999999999999998 77899999998874 489999999999988999999999999966 443358
Q ss_pred HHHHHHHHHhccCCcEEEEeeccccCc------------CcHHHHHHHHHHcCCEEEEEEec
Q 043503 358 EFTLYDIYRLLRPGGIFWLDRFFCFGS------------QLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 358 ~~~L~ei~RvLrPGG~lvl~~f~~~~~------------~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
..++.++.++|+|||++++..+..... ...+.+.++++++||+++.....
T Consensus 121 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 182 (203)
T 3h2b_A 121 PDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWD 182 (203)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEec
Confidence 999999999999999999987553221 12578999999999999987643
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-15 Score=139.72 Aligned_cols=126 Identities=13% Similarity=0.132 Sum_probs=102.5
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcC--CeeEEEcccccCCCCCCceeEEEEccchhhcCCch
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRG--LISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg--~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
.+|||+|||+|.++..+++++.+++++ |+++.+++.++++. .+.++.+|+..++++ ++||+|++..++++ .++.
T Consensus 47 ~~vLDiGcG~G~~~~~l~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~-~~~~ 122 (220)
T 3hnr_A 47 GNVLEFGVGTGNLTNKLLLAGRTVYGI--EPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHH-LTDD 122 (220)
T ss_dssp SEEEEECCTTSHHHHHHHHTTCEEEEE--CSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGG-SCHH
T ss_pred CeEEEeCCCCCHHHHHHHhCCCeEEEE--eCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhc-CChH
Confidence 456999999999999999999999998 77899999988773 488999999999887 89999999999955 5653
Q ss_pred hHHHHHHHHHHhccCCcEEEEeeccccCcC---------------------------cHHHHHHHHHHcCCEEEEEEec
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ---------------------------LNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~---------------------------~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
....++.++.|+|||||++++.++...... ..+.+..+++++||+++.....
T Consensus 123 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 201 (220)
T 3hnr_A 123 EKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLN 201 (220)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEECS
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeecc
Confidence 344599999999999999999864432211 1256888999999998775543
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.8e-15 Score=139.04 Aligned_cols=134 Identities=20% Similarity=0.146 Sum_probs=105.9
Q ss_pred HHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcC--CeeEEEcccccCCCCCCcee
Q 043503 263 YGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRG--LISMHISVSQRLPFFENTLD 340 (430)
Q Consensus 263 ~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg--~i~~~~~d~~~lpf~d~sfD 340 (430)
+.++.+....++.+ |||||||+|.++..+++++.+|+++ |+++.+++.++++. .+.++++|++.+ +++++||
T Consensus 32 ~~~~~l~~~~~~~~---vLDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD 105 (250)
T 2p7i_A 32 FMVRAFTPFFRPGN---LLELGSFKGDFTSRLQEHFNDITCV--EASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYD 105 (250)
T ss_dssp HHHHHHGGGCCSSC---EEEESCTTSHHHHHHTTTCSCEEEE--ESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEE
T ss_pred HHHHHHHhhcCCCc---EEEECCCCCHHHHHHHHhCCcEEEE--eCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCccc
Confidence 33444443444443 5999999999999999998899988 77799999988774 588999998887 4788999
Q ss_pred EEEEccchhhcCCchhHHHHHHHHH-HhccCCcEEEEeeccccC-----------------------------cCcHHHH
Q 043503 341 IVHSMHVLSNWIPDSMLEFTLYDIY-RLLRPGGIFWLDRFFCFG-----------------------------SQLNETY 390 (430)
Q Consensus 341 lV~~~~~L~~~~~d~~l~~~L~ei~-RvLrPGG~lvl~~f~~~~-----------------------------~~~~~~~ 390 (430)
+|++..+++| +++ ...++.++. |+|||||++++..+.... .-..+.+
T Consensus 106 ~v~~~~~l~~-~~~--~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (250)
T 2p7i_A 106 NIVLTHVLEH-IDD--PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTL 182 (250)
T ss_dssp EEEEESCGGG-CSS--HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHH
T ss_pred EEEEhhHHHh-hcC--HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHH
Confidence 9999999966 555 689999999 999999999997643210 0123578
Q ss_pred HHHHHHcCCEEEEEE
Q 043503 391 VPMLDRIGFKKLRWN 405 (430)
Q Consensus 391 ~~ll~~~Gfk~l~~~ 405 (430)
..+++++||+++...
T Consensus 183 ~~~l~~~Gf~~~~~~ 197 (250)
T 2p7i_A 183 ERDASRAGLQVTYRS 197 (250)
T ss_dssp HHHHHHTTCEEEEEE
T ss_pred HHHHHHCCCeEEEEe
Confidence 899999999998865
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-15 Score=140.49 Aligned_cols=124 Identities=18% Similarity=0.253 Sum_probs=101.9
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+|||+|||+|.++..+++.+.+|+++ |+++.+++.++++ + .+.++.+|++.+++++++||+|++..+++|
T Consensus 23 ~~vLDiGcG~G~~~~~l~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~- 99 (239)
T 1xxl_A 23 HRVLDIGAGAGHTALAFSPYVQECIGV--DATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHH- 99 (239)
T ss_dssp CEEEEESCTTSHHHHHHGGGSSEEEEE--ESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGG-
T ss_pred CEEEEEccCcCHHHHHHHHhCCEEEEE--ECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCchhh-
Confidence 456999999999999999998899988 6678888877654 3 388999999999999999999999999966
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeeccccCc---------------------CcHHHHHHHHHHcCCEEEEEEe
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS---------------------QLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~---------------------~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
.++ ...++.++.|+|||||++++.++..... ...+.+..+++++||+.+....
T Consensus 100 ~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~ 173 (239)
T 1xxl_A 100 FSD--VRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQK 173 (239)
T ss_dssp CSC--HHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred ccC--HHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEEEe
Confidence 455 7899999999999999999976543211 1245688899999999877654
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-15 Score=141.52 Aligned_cols=140 Identities=12% Similarity=0.121 Sum_probs=110.3
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcC----CeeEEEcccccCCCCCCce
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRG----LISMHISVSQRLPFFENTL 339 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg----~i~~~~~d~~~lpf~d~sf 339 (430)
+..++..++.....+|||+|||+|.++..++++ ..+|+++ |+++.+++.++++. .+.++++|+..+++++++|
T Consensus 82 ~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T 1xtp_A 82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLL--EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEE--ESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEE--eCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence 345555554444567799999999999999988 4568888 77799999888763 4889999999999888999
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC------------cHHHHHHHHHHcCCEEEEEEec
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ------------LNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~------------~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
|+|++..+++| .++.....++.++.|+|||||++++.+....... ..+.+..+++++||++++....
T Consensus 160 D~v~~~~~l~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 238 (254)
T 1xtp_A 160 DLIVIQWTAIY-LTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ 238 (254)
T ss_dssp EEEEEESCGGG-SCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred EEEEEcchhhh-CCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeec
Confidence 99999999965 5444588999999999999999999875321111 2367999999999999886543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=140.40 Aligned_cols=140 Identities=19% Similarity=0.194 Sum_probs=111.5
Q ss_pred HHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEE
Q 043503 264 GIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVH 343 (430)
Q Consensus 264 ~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~ 343 (430)
.+..++..++. ..+|||+|||+|.++..+++++.+|+++ |+++.+++.++++-.+.+..+|+..++ ++++||+|+
T Consensus 33 ~~~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~ 107 (211)
T 3e23_A 33 TLTKFLGELPA--GAKILELGCGAGYQAEAMLAAGFDVDAT--DGSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAVW 107 (211)
T ss_dssp HHHHHHTTSCT--TCEEEESSCTTSHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEEE
T ss_pred HHHHHHHhcCC--CCcEEEECCCCCHHHHHHHHcCCeEEEE--CCCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEEE
Confidence 35555554442 2457999999999999999999999998 677899999888755678889998888 789999999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc-----------CcHHHHHHHHHHcC-CEEEEEEeccc
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-----------QLNETYVPMLDRIG-FKKLRWNVGMK 409 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-----------~~~~~~~~ll~~~G-fk~l~~~~~~k 409 (430)
+..++++ .+.+....++.++.|+|||||++++........ ...+.+..+++++| |+++.......
T Consensus 108 ~~~~l~~-~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~ 184 (211)
T 3e23_A 108 AHACLLH-VPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEG 184 (211)
T ss_dssp ECSCGGG-SCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEE
T ss_pred ecCchhh-cCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccC
Confidence 9999965 554458899999999999999999975433221 13467999999999 99988775443
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.4e-15 Score=140.37 Aligned_cols=138 Identities=21% Similarity=0.328 Sum_probs=109.2
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d 336 (430)
++.++..++.....+|||||||+|.++..++++ +.+|+++ |+++.+++.++++ | .+.++.+|+..+|+++
T Consensus 50 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 50 TDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGI--SISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEE--ESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEE--eCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 445555444444456799999999999999986 8899998 6778888777654 3 3899999999999999
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC---------------------cHHHHHHHHH
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ---------------------LNETYVPMLD 395 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~---------------------~~~~~~~ll~ 395 (430)
++||+|++..+++| +++ ...++.++.|+|||||++++.++...... ..+.+..+++
T Consensus 128 ~~fD~v~~~~~l~~-~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 204 (273)
T 3bus_A 128 ASFDAVWALESLHH-MPD--RGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVR 204 (273)
T ss_dssp TCEEEEEEESCTTT-SSC--HHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH
T ss_pred CCccEEEEechhhh-CCC--HHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHH
Confidence 99999999999965 565 68899999999999999999876532210 1256888999
Q ss_pred HcCCEEEEEEec
Q 043503 396 RIGFKKLRWNVG 407 (430)
Q Consensus 396 ~~Gfk~l~~~~~ 407 (430)
++||+++.+...
T Consensus 205 ~aGf~~~~~~~~ 216 (273)
T 3bus_A 205 QAELVVTSTVDI 216 (273)
T ss_dssp HTTCEEEEEEEC
T ss_pred HcCCeEEEEEEC
Confidence 999999887643
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-15 Score=144.77 Aligned_cols=98 Identities=19% Similarity=0.220 Sum_probs=83.2
Q ss_pred EEEEEcCCccHHHHHHHHc----CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccc
Q 043503 279 IGLDIGGGTGTFAARMRER----NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHV 347 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~----g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~ 347 (430)
+|||+|||+|.++..++++ |++|+|+ |+++.|++.|+++ + .+.++++|+..+|++ .||+|+++.+
T Consensus 73 ~vLDlGcGtG~~~~~la~~~~~~~~~v~gv--D~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~~~ 148 (261)
T 4gek_A 73 QVYDLGCSLGAATLSVRRNIHHDNCKIIAI--DNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFT 148 (261)
T ss_dssp EEEEETCTTTHHHHHHHHTCCSSSCEEEEE--ESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEESC
T ss_pred EEEEEeCCCCHHHHHHHHhcCCCCCEEEEE--ECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceeeee
Confidence 4599999999999999986 6789988 7789999998865 2 388999999998864 5999999999
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
+ |++++.....+|.+++|+|||||.|++.+...
T Consensus 149 l-~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~ 181 (261)
T 4gek_A 149 L-QFLEPSERQALLDKIYQGLNPGGALVLSEKFS 181 (261)
T ss_dssp G-GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred e-eecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence 8 55666557789999999999999999987554
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-15 Score=139.85 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=102.9
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccC--CCCCCceeEEEEccchhhcCCch
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRL--PFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l--pf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
.+|||||||+|.++..+++++.+|+++ |+++.+++.++++ +.++.+|...+ ++++++||+|++..+++| +++.
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~-~~~~ 117 (240)
T 3dli_A 43 RRVLDIGCGRGEFLELCKEEGIESIGV--DINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEH-LDPE 117 (240)
T ss_dssp SCEEEETCTTTHHHHHHHHHTCCEEEE--CSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGG-SCGG
T ss_pred CeEEEEeCCCCHHHHHHHhCCCcEEEE--ECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhh-CCcH
Confidence 346999999999999999999999888 7789999999887 78888888775 788999999999999966 5654
Q ss_pred hHHHHHHHHHHhccCCcEEEEeeccccCc---------------CcHHHHHHHHHHcCCEEEEEEe
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRFFCFGS---------------QLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f~~~~~---------------~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
.+..++.++.|+|||||++++..+..... -..+.+..+++++||+.+....
T Consensus 118 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 183 (240)
T 3dli_A 118 RLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEF 183 (240)
T ss_dssp GHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEE
Confidence 57899999999999999999976543210 1236789999999999887663
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-15 Score=137.18 Aligned_cols=123 Identities=14% Similarity=0.192 Sum_probs=102.4
Q ss_pred cEEEEEcCCccHHHHHHHHcC---CEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRERN---VTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g---~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.++..+++.+ .+|+++ |+++.+++.++++ + .+.++.+|+..+++++++||+|++..++
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 116 (219)
T 3dh0_A 39 MTVLDVGTGAGFYLPYLSKMVGEKGKVYAI--DVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTF 116 (219)
T ss_dssp CEEEESSCTTCTTHHHHHHHHTTTCEEEEE--ESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESCG
T ss_pred CEEEEEecCCCHHHHHHHHHhCCCcEEEEE--ECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehhh
Confidence 456999999999999999885 789988 6678888777655 3 4889999999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC---------cHHHHHHHHHHcCCEEEEEE
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ---------LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~---------~~~~~~~ll~~~Gfk~l~~~ 405 (430)
++ .++ ...++.++.|+|+|||++++.++...... ..+.+..++++.||+.++..
T Consensus 117 ~~-~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 179 (219)
T 3dh0_A 117 HE-LSE--PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVV 179 (219)
T ss_dssp GG-CSS--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEE
T ss_pred hh-cCC--HHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEE
Confidence 66 555 78999999999999999999876543221 24679999999999988754
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-15 Score=140.88 Aligned_cols=135 Identities=13% Similarity=0.143 Sum_probs=105.1
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d 336 (430)
++.++.........+|||+|||+|.++..+++. +.+|+++ |+++.+++.++++ | .+.++++|+..+++ +
T Consensus 25 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gv--D~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~ 101 (256)
T 1nkv_A 25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGI--DMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-N 101 (256)
T ss_dssp HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEE--ESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-S
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEE--eCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-C
Confidence 445554443334456799999999999999987 7899888 7788888877654 3 48999999999887 8
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC------------------cHHHHHHHHHHcC
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ------------------LNETYVPMLDRIG 398 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~------------------~~~~~~~ll~~~G 398 (430)
++||+|++..++++ .++ ...+|.++.|+|||||++++.+....... ....+..+++++|
T Consensus 102 ~~fD~V~~~~~~~~-~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 178 (256)
T 1nkv_A 102 EKCDVAACVGATWI-AGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLG 178 (256)
T ss_dssp SCEEEEEEESCGGG-TSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTT
T ss_pred CCCCEEEECCChHh-cCC--HHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCC
Confidence 89999999999955 555 67899999999999999999764422111 2256889999999
Q ss_pred CEEEEEE
Q 043503 399 FKKLRWN 405 (430)
Q Consensus 399 fk~l~~~ 405 (430)
|+.+...
T Consensus 179 f~~~~~~ 185 (256)
T 1nkv_A 179 YDVVEMV 185 (256)
T ss_dssp BCCCEEE
T ss_pred CeeEEEE
Confidence 9987654
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=136.09 Aligned_cols=125 Identities=18% Similarity=0.212 Sum_probs=101.3
Q ss_pred ccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 277 IRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
..+|||+|||+|.++..++++ +.+++++ |+++.+++.++++ +.+.++.+|+..++++ ++||+|++..++++
T Consensus 45 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~ 121 (234)
T 3dtn_A 45 NPDILDLGAGTGLLSAFLMEKYPEATFTLV--DMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIHH 121 (234)
T ss_dssp SCEEEEETCTTSHHHHHHHHHCTTCEEEEE--ESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCGGG
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCeEEEE--ECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCcccc
Confidence 356799999999999999998 7899988 6778999888876 3589999999998877 89999999999966
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC-------------------------------------cHHHHHHH
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-------------------------------------LNETYVPM 393 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-------------------------------------~~~~~~~l 393 (430)
.++.....++.++.|+|||||++++.++...... ..+++..+
T Consensus 122 -~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 200 (234)
T 3dtn_A 122 -LEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNW 200 (234)
T ss_dssp -SCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHH
Confidence 5654455799999999999999999875532211 12456678
Q ss_pred HHHcCCEEEEEE
Q 043503 394 LDRIGFKKLRWN 405 (430)
Q Consensus 394 l~~~Gfk~l~~~ 405 (430)
++++||+.++..
T Consensus 201 l~~aGF~~v~~~ 212 (234)
T 3dtn_A 201 LKEAGFRDVSCI 212 (234)
T ss_dssp HHHTTCEEEEEE
T ss_pred HHHcCCCceeee
Confidence 999999987654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.62 E-value=5.7e-15 Score=143.25 Aligned_cols=125 Identities=22% Similarity=0.247 Sum_probs=103.2
Q ss_pred ccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 277 IRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
..+|||+|||+|.++..++++ +.+|+++ |+++.+++.++++ | .+.++.+|+..+|+++++||+|++..++
T Consensus 83 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 160 (297)
T 2o57_A 83 QAKGLDLGAGYGGAARFLVRKFGVSIDCL--NIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAF 160 (297)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCCEEEEE--ESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCG
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCEEEEE--eCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchh
Confidence 346799999999999999998 8899988 6778888877654 3 4899999999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC------------------cHHHHHHHHHHcCCEEEEEEe
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ------------------LNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~------------------~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
+| .++ ...++.++.|+|||||++++.++...... ....+..+++++||+.+....
T Consensus 161 ~~-~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 233 (297)
T 2o57_A 161 LH-SPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFS 233 (297)
T ss_dssp GG-CSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred hh-cCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 66 555 78999999999999999999876532210 234678899999999887653
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-15 Score=138.88 Aligned_cols=142 Identities=16% Similarity=0.250 Sum_probs=109.6
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C-------CeeEEEcccccCCCCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G-------LISMHISVSQRLPFFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g-------~i~~~~~d~~~lpf~d~sfDlV~~~~ 346 (430)
.+|||+|||+|.++..+++++.+|+++ |+++.+++.++++ + .+.+..+|+..+++++++||+|++..
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 109 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASKGYSVTGI--DINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQA 109 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEES
T ss_pred CeEEEECCCCCHHHHHHHhCCCeEEEE--ECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEcc
Confidence 356999999999999999999999998 6678888888764 2 26889999999999899999999999
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC-------------------------------------cCcHHH
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG-------------------------------------SQLNET 389 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~-------------------------------------~~~~~~ 389 (430)
+++++.+......++.++.++|||||++++.++.... ....++
T Consensus 110 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (235)
T 3sm3_A 110 FLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKE 189 (235)
T ss_dssp CGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCHHH
Confidence 9966433333458999999999999999997653210 013467
Q ss_pred HHHHHHHcCCEEEEEEecc-cccCCCchhHHHh
Q 043503 390 YVPMLDRIGFKKLRWNVGM-KLDRGVKKNEWYF 421 (430)
Q Consensus 390 ~~~ll~~~Gfk~l~~~~~~-k~~~g~~~~~~~l 421 (430)
+..+++++||+++.+.... ....|.....+|+
T Consensus 190 l~~ll~~aGf~~~~~~~~~~~~~~g~~~~~~~i 222 (235)
T 3sm3_A 190 LVFLLTDCRFEIDYFRVKELETRTGNKILGFVI 222 (235)
T ss_dssp HHHHHHTTTEEEEEEEEEEEECTTSCEEEEEEE
T ss_pred HHHHHHHcCCEEEEEEecceeeccCCccceEEE
Confidence 9999999999999877443 3334444444444
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.5e-16 Score=148.84 Aligned_cols=108 Identities=14% Similarity=0.210 Sum_probs=91.1
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEE
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHS 344 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~ 344 (430)
++.+....+.+ .+|||||||+|.++..|++++.+|+++ |+++.|++.|+++..+.+++++++.+|+++++||+|+|
T Consensus 30 ~~~l~~~~~~~--~~vLDvGcGtG~~~~~l~~~~~~v~gv--D~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~ 105 (257)
T 4hg2_A 30 FRWLGEVAPAR--GDALDCGCGSGQASLGLAEFFERVHAV--DPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIA 105 (257)
T ss_dssp HHHHHHHSSCS--SEEEEESCTTTTTHHHHHTTCSEEEEE--ESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEE
T ss_pred HHHHHHhcCCC--CCEEEEcCCCCHHHHHHHHhCCEEEEE--eCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEE
Confidence 34444444432 357999999999999999999999998 77899999888777799999999999999999999999
Q ss_pred ccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 345 MHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 345 ~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
..++ ||.+ ...++.++.|+|||||.|++..+.
T Consensus 106 ~~~~-h~~~---~~~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 106 AQAM-HWFD---LDRFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp CSCC-TTCC---HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eeeh-hHhh---HHHHHHHHHHHcCCCCEEEEEECC
Confidence 9999 6664 568999999999999999886543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.7e-15 Score=137.37 Aligned_cols=123 Identities=15% Similarity=0.165 Sum_probs=103.5
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc---CCeeEEEcccccCCCCCCceeEEEEccchhhcCCc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR---GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r---g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d 354 (430)
.+|||+|||+|.++..+++++.+|+++ |+++.+++.++++ ..+.++.+|+..+++++++||+|++..+++| .++
T Consensus 55 ~~vLDiG~G~G~~~~~l~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~ 131 (242)
T 3l8d_A 55 AEVLDVGCGDGYGTYKLSRTGYKAVGV--DISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW-TEE 131 (242)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEE--ESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS-SSC
T ss_pred CeEEEEcCCCCHHHHHHHHcCCeEEEE--ECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh-ccC
Confidence 356999999999999999999999988 6778999999887 3389999999999998999999999999966 555
Q ss_pred hhHHHHHHHHHHhccCCcEEEEeeccccCc------------------CcHHHHHHHHHHcCCEEEEEE
Q 043503 355 SMLEFTLYDIYRLLRPGGIFWLDRFFCFGS------------------QLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~------------------~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
...++.++.++|+|||++++..+..... .....+..+++++||+++...
T Consensus 132 --~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 132 --PLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp --HHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred --HHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 7789999999999999999976433211 123568899999999998865
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.8e-15 Score=143.73 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=108.2
Q ss_pred HHHHccCC-CCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCC
Q 043503 266 DQVLSMKP-LGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFE 336 (430)
Q Consensus 266 d~lL~~~p-~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d 336 (430)
+.++..++ .....+|||+|||+|.++..++++ +.+|+++ |+++.+++.++++ | .+.++.+|+..+++++
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 183 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGV--TLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK 183 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEE--ESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC
Confidence 34455444 334456799999999999999998 9999998 6678888877764 3 4899999999999999
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC-------------------cHHHHHHHHHHc
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-------------------LNETYVPMLDRI 397 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-------------------~~~~~~~ll~~~ 397 (430)
++||+|++..++++ . + ...++.++.|+|||||++++.++...... ..+.+..+++++
T Consensus 184 ~~fD~V~~~~~l~~-~-~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~a 259 (312)
T 3vc1_A 184 GAVTASWNNESTMY-V-D--LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADN 259 (312)
T ss_dssp TCEEEEEEESCGGG-S-C--HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTT
T ss_pred CCEeEEEECCchhh-C-C--HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHC
Confidence 99999999999966 4 3 78999999999999999998775543311 235688899999
Q ss_pred CCEEEEEEe
Q 043503 398 GFKKLRWNV 406 (430)
Q Consensus 398 Gfk~l~~~~ 406 (430)
||+.+....
T Consensus 260 Gf~~~~~~~ 268 (312)
T 3vc1_A 260 RLVPHTIVD 268 (312)
T ss_dssp TEEEEEEEE
T ss_pred CCEEEEEEe
Confidence 999888664
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.3e-15 Score=134.23 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=104.0
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCC--eeEEEcccccCCCCCCceeEEEEccchhhcCCch
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGL--ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
.+|||+|||+|.++..+++++.+|+++ |+++.+++.+++++. +.++.+|+..+ +++++||+|++..+++| .++.
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~~v~~~--D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~-~~~~ 123 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGLADRVTAL--DGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAH-VPDD 123 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHHSSEEEEE--ESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGG-SCHH
T ss_pred CeEEEECCCCCHHHHHHHhcCCeEEEE--eCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhc-CCHH
Confidence 357999999999999999999999998 677899999988763 88999999887 78899999999999965 6664
Q ss_pred hHHHHHHHHHHhccCCcEEEEeeccccC------------------------------cCcHHHHHHHHHHcCCEEEEEE
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRFFCFG------------------------------SQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f~~~~------------------------------~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
....++.++.++|+|||.+++.++.... ....+.+..+++++||++..+.
T Consensus 124 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 203 (218)
T 3ou2_A 124 RFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVDE 203 (218)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEEeee
Confidence 5689999999999999999987653210 0123678999999999977766
Q ss_pred ecc
Q 043503 406 VGM 408 (430)
Q Consensus 406 ~~~ 408 (430)
...
T Consensus 204 ~~~ 206 (218)
T 3ou2_A 204 VHP 206 (218)
T ss_dssp EET
T ss_pred ccc
Confidence 543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=138.53 Aligned_cols=136 Identities=19% Similarity=0.253 Sum_probs=107.0
Q ss_pred HHHHHccCC-CCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCC
Q 043503 265 IDQVLSMKP-LGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFF 335 (430)
Q Consensus 265 id~lL~~~p-~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~ 335 (430)
+..++..++ .....+|||||||+|.++..+++. +.+|+++ |+++.+++.++++ | .+.++++|+..++++
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 111 (267)
T 3kkz_A 34 TLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGL--DFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFR 111 (267)
T ss_dssp HHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEE--ESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC
T ss_pred HHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEE--eCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCC
Confidence 445555443 233456799999999999999998 4599988 6778888877665 3 389999999999988
Q ss_pred CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC-----------------cHHHHHHHHHHcC
Q 043503 336 ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-----------------LNETYVPMLDRIG 398 (430)
Q Consensus 336 d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-----------------~~~~~~~ll~~~G 398 (430)
+++||+|++..+++++ + ...++.++.++|||||++++.++...... ....+.++++++|
T Consensus 112 ~~~fD~i~~~~~~~~~--~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 187 (267)
T 3kkz_A 112 NEELDLIWSEGAIYNI--G--FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAG 187 (267)
T ss_dssp TTCEEEEEESSCGGGT--C--HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTT
T ss_pred CCCEEEEEEcCCceec--C--HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCC
Confidence 9999999999999664 4 68899999999999999999875422111 2346788999999
Q ss_pred CEEEEEEe
Q 043503 399 FKKLRWNV 406 (430)
Q Consensus 399 fk~l~~~~ 406 (430)
|+.+....
T Consensus 188 f~~v~~~~ 195 (267)
T 3kkz_A 188 YLPVATFI 195 (267)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
Confidence 99987654
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.9e-15 Score=141.60 Aligned_cols=136 Identities=24% Similarity=0.327 Sum_probs=107.6
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCC-CCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLP-FFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lp-f~d 336 (430)
+..++...+.. ..+|||||||+|.++..+++.+.+|+++ |+++.+++.++++ | .+.++.+|+..++ +++
T Consensus 58 l~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 58 LDRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAERGHQVILC--DLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHHHTCSS-CCEEEEETCTTCHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHHHhcCCC-CCEEEEeCCcchHHHHHHHHCCCEEEEE--ECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 34455544433 2467999999999999999999999998 6678888888765 3 3889999998888 788
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC------------------------------cCc
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG------------------------------SQL 386 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~------------------------------~~~ 386 (430)
++||+|++..++++ .++ ...++.++.++|||||++++..+.... .-.
T Consensus 135 ~~fD~v~~~~~l~~-~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (285)
T 4htf_A 135 TPVDLILFHAVLEW-VAD--PRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRD 211 (285)
T ss_dssp SCEEEEEEESCGGG-CSC--HHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBC
T ss_pred CCceEEEECchhhc-ccC--HHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCC
Confidence 99999999999965 566 688999999999999999987642110 012
Q ss_pred HHHHHHHHHHcCCEEEEEEe
Q 043503 387 NETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 387 ~~~~~~ll~~~Gfk~l~~~~ 406 (430)
.+.+..+++++||+++....
T Consensus 212 ~~~l~~~l~~aGf~v~~~~~ 231 (285)
T 4htf_A 212 PTQVYLWLEEAGWQIMGKTG 231 (285)
T ss_dssp HHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHCCCceeeeee
Confidence 36789999999999987663
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-15 Score=136.28 Aligned_cols=135 Identities=19% Similarity=0.311 Sum_probs=104.8
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d 336 (430)
.+.++...+.... +|||+|||+|.++..++++ +.+++++ |+++.+++.++++ + .+.++++|+..+++++
T Consensus 33 ~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~--D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 33 AENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRAL--DFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEE--ESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEE--ECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 3444443332222 6799999999999999998 7788888 6778888887765 2 4899999999999999
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC--------------------------cCcHHHH
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG--------------------------SQLNETY 390 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~--------------------------~~~~~~~ 390 (430)
++||+|++..+++| .++ ...++.++.|+|+|||++++.+.+... ....+.+
T Consensus 110 ~~~D~v~~~~~l~~-~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (219)
T 3dlc_A 110 NYADLIVSRGSVFF-WED--VATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERF 186 (219)
T ss_dssp TCEEEEEEESCGGG-CSC--HHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHH
T ss_pred ccccEEEECchHhh-ccC--HHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHH
Confidence 99999999999966 455 788999999999999999997533211 0012568
Q ss_pred HHHHHHcCCEEEEEE
Q 043503 391 VPMLDRIGFKKLRWN 405 (430)
Q Consensus 391 ~~ll~~~Gfk~l~~~ 405 (430)
..+++++||+.++..
T Consensus 187 ~~~l~~aGf~~v~~~ 201 (219)
T 3dlc_A 187 QNVLDEIGISSYEII 201 (219)
T ss_dssp HHHHHHHTCSSEEEE
T ss_pred HHHHHHcCCCeEEEE
Confidence 889999999877654
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.7e-15 Score=137.21 Aligned_cols=129 Identities=16% Similarity=0.104 Sum_probs=104.9
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcC-------CeeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRG-------LISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg-------~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
.+|||+|||+|.++..+++.+.+|+++ |+++.+++.++++. .+.++++|+..++ ++++||+|++..++++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERFVVGL--DISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCA 144 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEEEEEE--CSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTT
T ss_pred CCEEEeCCCCCHHHHHHHhCCCeEEEE--ECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhc
Confidence 367999999999999999889999988 77889988887651 2889999998877 5669999999999955
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC-------cHHHHHHHHHHcCCEEEEEEecccc
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-------LNETYVPMLDRIGFKKLRWNVGMKL 410 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-------~~~~~~~ll~~~Gfk~l~~~~~~k~ 410 (430)
++.+....++.++.++|+|||++++..+...... ..+.+..++++.||+++........
T Consensus 145 -~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 210 (235)
T 3lcc_A 145 -IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENPHA 210 (235)
T ss_dssp -SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECTTC
T ss_pred -CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecCCc
Confidence 5644588999999999999999998765432211 3478999999999999987755443
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-15 Score=136.05 Aligned_cols=126 Identities=17% Similarity=0.263 Sum_probs=102.6
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccC---CCCC-CceeEEEEccchhhcCC
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRL---PFFE-NTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l---pf~d-~sfDlV~~~~~L~~~~~ 353 (430)
.+|||+|||+|.++..+++++.+|+++ |+++.+++.+++++.+.+...+...+ ++.+ .+||+|++..+++ .+
T Consensus 54 ~~vLdiG~G~G~~~~~l~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~--~~ 129 (227)
T 3e8s_A 54 ERVLDLGCGEGWLLRALADRGIEAVGV--DGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL--HQ 129 (227)
T ss_dssp SEEEEETCTTCHHHHHHHTTTCEEEEE--ESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC--SS
T ss_pred CEEEEeCCCCCHHHHHHHHCCCEEEEE--cCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh--hh
Confidence 456999999999999999999999988 77799999999998888888887766 5444 4599999999985 44
Q ss_pred chhHHHHHHHHHHhccCCcEEEEeeccccCc----------------------------CcHHHHHHHHHHcCCEEEEEE
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS----------------------------QLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~----------------------------~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+ ...++.++.++|||||++++..+..... ...+++..+++++||+++...
T Consensus 130 ~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 207 (227)
T 3e8s_A 130 D--IIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQ 207 (227)
T ss_dssp C--CHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred h--HHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEe
Confidence 4 6789999999999999999976532110 034789999999999999877
Q ss_pred eccc
Q 043503 406 VGMK 409 (430)
Q Consensus 406 ~~~k 409 (430)
....
T Consensus 208 ~~~~ 211 (227)
T 3e8s_A 208 EPQH 211 (227)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6443
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=138.54 Aligned_cols=136 Identities=17% Similarity=0.164 Sum_probs=105.6
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d 336 (430)
++.++..++.....+|||||||+|.++..++++ +.+|+++ |+++.+++.++++ | .+.+..+|...+|
T Consensus 53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gv--d~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--- 127 (287)
T 1kpg_A 53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGL--TLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--- 127 (287)
T ss_dssp HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEE--ESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEE--ECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---
Confidence 445555544444456799999999999999955 8899988 6778888888765 3 4888999988776
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc-------------------------------C
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-------------------------------Q 385 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-------------------------------~ 385 (430)
++||+|++..+++|+ ++.....++.++.|+|||||++++..+..... .
T Consensus 128 ~~fD~v~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (287)
T 1kpg_A 128 EPVDRIVSIGAFEHF-GHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLP 206 (287)
T ss_dssp CCCSEEEEESCGGGT-CTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCC
T ss_pred CCeeEEEEeCchhhc-ChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCC
Confidence 789999999999764 33348899999999999999999877553210 0
Q ss_pred cHHHHHHHHHHcCCEEEEEEe
Q 043503 386 LNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 386 ~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
..+.+..+++++||+++.+..
T Consensus 207 s~~~~~~~l~~aGf~~~~~~~ 227 (287)
T 1kpg_A 207 SIPMVQECASANGFTVTRVQS 227 (287)
T ss_dssp CHHHHHHHHHTTTCEEEEEEE
T ss_pred CHHHHHHHHHhCCcEEEEEEe
Confidence 245688899999999998764
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.4e-15 Score=143.56 Aligned_cols=99 Identities=13% Similarity=0.129 Sum_probs=84.5
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc---------CCeeEEEcccccCCCCCCceeEEEEccchh
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR---------GLISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r---------g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
+|||||||+|.++..+++++.+|+++ |+++.+++.++++ ..+.++++|+..+++ +++||+|+|.....
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~ 161 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGWEVTAL--ELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSI 161 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTCCEEEE--ESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHH
T ss_pred cEEEEeccCCHHHHHHHHcCCeEEEE--ECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCccc
Confidence 56999999999999999999999998 6678898888765 348999999999887 78999999876655
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
++.+......+|.++.++|||||+|++..+.
T Consensus 162 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 162 NELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp TTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 6676556789999999999999999986543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.5e-15 Score=140.46 Aligned_cols=124 Identities=17% Similarity=0.221 Sum_probs=101.5
Q ss_pred CccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCch
Q 043503 276 TIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
...+|||+|||+|.++..+++.+.+|+++ |+++.+++.++++..+.++++|++.+++++++||+|++..+++| +++
T Consensus 34 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~- 109 (261)
T 3ege_A 34 KGSVIADIGAGTGGYSVALANQGLFVYAV--EPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHH-FSH- 109 (261)
T ss_dssp TTCEEEEETCTTSHHHHHHHTTTCEEEEE--CSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGG-CSS-
T ss_pred CCCEEEEEcCcccHHHHHHHhCCCEEEEE--eCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhh-ccC-
Confidence 34567999999999999999999999998 77888888887777789999999999999999999999999966 455
Q ss_pred hHHHHHHHHHHhccCCcEEEEeeccccCcC--------------------cHHHHHHHHHHcCCEEEEEEe
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ--------------------LNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~--------------------~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
...++.++.|+|| ||++++.++...... ..+.+. +++++||..+....
T Consensus 110 -~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~ 177 (261)
T 3ege_A 110 -LEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIP 177 (261)
T ss_dssp -HHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEE
T ss_pred -HHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEE
Confidence 7899999999999 998887665421100 123466 99999998776554
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=134.28 Aligned_cols=126 Identities=19% Similarity=0.189 Sum_probs=103.4
Q ss_pred ccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhcC---CeeEEEcccccCCCCCCceeEEEEccchhhcC
Q 043503 277 IRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASRG---LISMHISVSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~rg---~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
..+|||+|||+|.++..+++++. +|+++ |+++.+++.++++. .+.++.+|+..+++++++||+|++..++++ .
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~ 120 (243)
T 3bkw_A 44 GLRIVDLGCGFGWFCRWAHEHGASYVLGL--DLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHY-V 120 (243)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGG-C
T ss_pred CCEEEEEcCcCCHHHHHHHHCCCCeEEEE--cCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccccc-c
Confidence 34579999999999999999988 89988 66789999998774 378999999988888899999999999865 5
Q ss_pred CchhHHHHHHHHHHhccCCcEEEEeecccc---------------------Cc--------------------CcHHHHH
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFWLDRFFCF---------------------GS--------------------QLNETYV 391 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~---------------------~~--------------------~~~~~~~ 391 (430)
++ ...++.++.++|+|||++++..+... .. ...+++.
T Consensus 121 ~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 198 (243)
T 3bkw_A 121 ED--VARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTL 198 (243)
T ss_dssp SC--HHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHHHHH
T ss_pred ch--HHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccHHHHH
Confidence 55 78999999999999999998652110 00 0246789
Q ss_pred HHHHHcCCEEEEEEec
Q 043503 392 PMLDRIGFKKLRWNVG 407 (430)
Q Consensus 392 ~ll~~~Gfk~l~~~~~ 407 (430)
.+++++||+++.+...
T Consensus 199 ~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 199 NALIRSGFAIEHVEEF 214 (243)
T ss_dssp HHHHHTTCEEEEEEEC
T ss_pred HHHHHcCCEeeeeccC
Confidence 9999999999987644
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-14 Score=134.85 Aligned_cols=135 Identities=20% Similarity=0.234 Sum_probs=104.8
Q ss_pred HHHHHccCC-CCCccEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCCCC
Q 043503 265 IDQVLSMKP-LGTIRIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLPFF 335 (430)
Q Consensus 265 id~lL~~~p-~~~ir~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lpf~ 335 (430)
+..++..++ .....+|||+|||+|.++..+++.+ .+|+++ |+++.+++.++++ |. +.++++|+..+|++
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 111 (257)
T 3f4k_A 34 TRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGI--DLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ 111 (257)
T ss_dssp HHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEE--ESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSC
T ss_pred HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEE--ECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCC
Confidence 444554432 2223467999999999999999984 499988 6678888877654 32 88999999999999
Q ss_pred CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC-----------------cHHHHHHHHHHcC
Q 043503 336 ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-----------------LNETYVPMLDRIG 398 (430)
Q Consensus 336 d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-----------------~~~~~~~ll~~~G 398 (430)
+++||+|++..++++. + ...++.++.|+|||||++++.+....... ..+.+..+++++|
T Consensus 112 ~~~fD~v~~~~~l~~~--~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 187 (257)
T 3f4k_A 112 NEELDLIWSEGAIYNI--G--FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAG 187 (257)
T ss_dssp TTCEEEEEEESCSCCC--C--HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTT
T ss_pred CCCEEEEEecChHhhc--C--HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCC
Confidence 9999999999999664 3 67899999999999999999874321111 2356788999999
Q ss_pred CEEEEEE
Q 043503 399 FKKLRWN 405 (430)
Q Consensus 399 fk~l~~~ 405 (430)
|+.+...
T Consensus 188 f~~v~~~ 194 (257)
T 3f4k_A 188 YTPTAHF 194 (257)
T ss_dssp EEEEEEE
T ss_pred CeEEEEE
Confidence 9988755
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=138.80 Aligned_cols=123 Identities=20% Similarity=0.296 Sum_probs=100.9
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc-CCeeEEEcccccCCCCCCceeEEEEccchhhcCCchh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR-GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r-g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
.+|||||||+|.++..+++.+.+|+++ |+++.|++.++++ ..+.+.++|++.+++ +++||+|++..+++ |+++
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~-~~~d-- 132 (279)
T 3ccf_A 59 EFILDLGCGTGQLTEKIAQSGAEVLGT--DNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAMLH-WVKE-- 132 (279)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEESCGG-GCSC--
T ss_pred CEEEEecCCCCHHHHHHHhCCCeEEEE--ECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcchhh-hCcC--
Confidence 456999999999999999988999998 7789999998877 357899999999887 67999999999994 5666
Q ss_pred HHHHHHHHHHhccCCcEEEEeeccccC---------------------------cCcHHHHHHHHHHcCCEEEEEEe
Q 043503 357 LEFTLYDIYRLLRPGGIFWLDRFFCFG---------------------------SQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 357 l~~~L~ei~RvLrPGG~lvl~~f~~~~---------------------------~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
...++.++.|+|||||++++..+.... ....+.+..+++++||+.+....
T Consensus 133 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 209 (279)
T 3ccf_A 133 PEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAAL 209 (279)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEEEEEEE
Confidence 789999999999999999986543211 00235678899999999887653
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=137.26 Aligned_cols=98 Identities=15% Similarity=0.196 Sum_probs=83.9
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcC-CeeEEEcccccCCCCCCceeEEEEcc-chhhcCCch
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRG-LISMHISVSQRLPFFENTLDIVHSMH-VLSNWIPDS 355 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg-~i~~~~~d~~~lpf~d~sfDlV~~~~-~L~~~~~d~ 355 (430)
.+|||+|||+|.++..+++++.+|+++ |+++.+++.++++. .+.++++|+..+++ +++||+|+|.. +++++....
T Consensus 52 ~~vLDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~ 128 (263)
T 3pfg_A 52 ASLLDVACGTGMHLRHLADSFGTVEGL--ELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQA 128 (263)
T ss_dssp CEEEEETCTTSHHHHHHTTTSSEEEEE--ESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHH
T ss_pred CcEEEeCCcCCHHHHHHHHcCCeEEEE--ECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHH
Confidence 457999999999999999999999998 67799999998873 48899999999887 78999999997 886543324
Q ss_pred hHHHHHHHHHHhccCCcEEEEee
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
....++.++.++|||||+|+++.
T Consensus 129 ~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 129 ELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp HHHHHHHHHHHTEEEEEEEEECC
T ss_pred HHHHHHHHHHHhcCCCcEEEEEe
Confidence 57889999999999999999963
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-14 Score=134.25 Aligned_cols=135 Identities=19% Similarity=0.243 Sum_probs=105.2
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-CCeeEEEcccccCCCCCCceeE
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-GLISMHISVSQRLPFFENTLDI 341 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-g~i~~~~~d~~~lpf~d~sfDl 341 (430)
...++..++.....+|||+|||+|.++..++++ +.+|+++ |+++.|++.++++ ..+.++.+|++.++ ++++||+
T Consensus 22 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~--D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~ 98 (259)
T 2p35_A 22 ARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGI--DSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADL 98 (259)
T ss_dssp HHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEE--ESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEE
T ss_pred HHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCE
Confidence 345555444333455799999999999999998 8899998 6779999998877 34889999999988 7889999
Q ss_pred EEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC-----------------------------cCcHHHHHH
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG-----------------------------SQLNETYVP 392 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~-----------------------------~~~~~~~~~ 392 (430)
|++..+++ |.++ ...++.++.++|+|||++++..+.... ....+.+..
T Consensus 99 v~~~~~l~-~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (259)
T 2p35_A 99 LYANAVFQ-WVPD--HLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFN 175 (259)
T ss_dssp EEEESCGG-GSTT--HHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHH
T ss_pred EEEeCchh-hCCC--HHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHH
Confidence 99999994 5666 789999999999999999987532110 012356888
Q ss_pred HHHHcCCEEEEEE
Q 043503 393 MLDRIGFKKLRWN 405 (430)
Q Consensus 393 ll~~~Gfk~l~~~ 405 (430)
+++++||++..+.
T Consensus 176 ~l~~aGf~v~~~~ 188 (259)
T 2p35_A 176 ALSPKSSRVDVWH 188 (259)
T ss_dssp HHGGGEEEEEEEE
T ss_pred HHHhcCCceEEEE
Confidence 9999999755443
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.6e-15 Score=134.40 Aligned_cols=147 Identities=16% Similarity=0.169 Sum_probs=108.5
Q ss_pred cEEEEEcCCccHH-HHHHHHcCCEEEEEecCCChhHHHHHHhc-----CCeeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTF-AARMRERNVTIITTSLNLDGPFNSFIASR-----GLISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~-a~~La~~g~~Vv~vdiD~s~~~le~a~~r-----g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+|||+|||+|.+ ...++..+.+|+++ |+++.+++.++++ ..+.++.+|+..+++++++||+|++..+++|
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~- 101 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVEDGYKTYGI--EISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFH- 101 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHTTCEEEEE--ECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGG-
T ss_pred CEEEEECCCCCHHHHHHHHhCCCEEEEE--ECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHh-
Confidence 4569999999997 45556668899998 6778888877654 3478899999999988999999999988866
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeeccccCc------------------------C--cHHHHHHHHHHcCCEEEEEE
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS------------------------Q--LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~------------------------~--~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.+......++.++.++|+|||++++..+..... . ..+++..++...||......
T Consensus 102 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~~~ 181 (209)
T 2p8j_A 102 MRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDR 181 (209)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeeeee
Confidence 444458899999999999999999877543211 0 12457888888888776655
Q ss_pred ecccccCCCchhHHHhHhhccC
Q 043503 406 VGMKLDRGVKKNEWYFSAVLEK 427 (430)
Q Consensus 406 ~~~k~~~g~~~~~~~lsa~leK 427 (430)
.......|......|....++|
T Consensus 182 ~~~~~~~g~~~~~~f~~~~~~~ 203 (209)
T 2p8j_A 182 VVERINDGLKIKQGYVDYIAEK 203 (209)
T ss_dssp EEEEEETTEEEEEEEEEEEEEC
T ss_pred eeehhhcCCcccceeeeeehhh
Confidence 4444344444455555555555
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-14 Score=134.73 Aligned_cols=128 Identities=16% Similarity=0.138 Sum_probs=103.9
Q ss_pred ccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcC------CeeEEEcccccCCCCCCceeEEEEccchh
Q 043503 277 IRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRG------LISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg------~i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
..+|||+|||+|.++..++++ +.+|+++ |+++.+++.++++. .+.++.+|+..+++++++||+|++..+++
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLFREVDMV--DITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTCSEEEEE--ESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCEEEEECCCCCHHHHHHHHhcCCEEEEE--eCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 356799999999999999988 4588888 77789998887652 27789999999988888999999999996
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccC--------c---CcHHHHHHHHHHcCCEEEEEEec
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG--------S---QLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~--------~---~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
+ .++.....++.++.++|+|||++++.++.... . ...+.+.++++++||+++.....
T Consensus 158 ~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 225 (241)
T 2ex4_A 158 H-LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ 225 (241)
T ss_dssp G-SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred h-CCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeec
Confidence 5 55544678999999999999999997654321 0 13578999999999999987643
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-14 Score=137.94 Aligned_cols=125 Identities=13% Similarity=-0.013 Sum_probs=99.0
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc-----------------------CCeeEEEcccccCCC
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR-----------------------GLISMHISVSQRLPF 334 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r-----------------------g~i~~~~~d~~~lpf 334 (430)
.+|||+|||+|..+..|+++|.+|+|+ |+|+.|++.|+++ ..+.++++|+..+++
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G~~V~gv--D~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~ 147 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRGHTVVGV--EISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR 147 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTTCEEEEE--CSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG
T ss_pred CeEEEeCCCCcHHHHHHHHCCCeEEEE--ECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCc
Confidence 356999999999999999999999998 8889999988643 237899999999987
Q ss_pred CC-CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecccc-----Cc---CcHHHHHHHHHHcCCEEEEEE
Q 043503 335 FE-NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF-----GS---QLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 335 ~d-~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~-----~~---~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.+ ++||+|++..++.+ ++......++.++.|+|||||+|++..+... ++ -..+++..++.. +|+++.+.
T Consensus 148 ~~~~~FD~V~~~~~l~~-l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~~~ 225 (252)
T 2gb4_A 148 ANIGKFDRIWDRGALVA-INPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQCLE 225 (252)
T ss_dssp GCCCCEEEEEESSSTTT-SCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred ccCCCEEEEEEhhhhhh-CCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEEEe
Confidence 64 89999999888855 5655678899999999999999975443211 11 123678888877 59988766
Q ss_pred e
Q 043503 406 V 406 (430)
Q Consensus 406 ~ 406 (430)
.
T Consensus 226 ~ 226 (252)
T 2gb4_A 226 E 226 (252)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4.5e-14 Score=133.55 Aligned_cols=123 Identities=20% Similarity=0.297 Sum_probs=99.2
Q ss_pred ccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc-----CCeeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 277 IRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR-----GLISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r-----g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
..+|||+|||+|.++..+++++.+|+++ |+++.+++.++++ ..+.++.+|++.+++++++||+|++..+++ +
T Consensus 40 ~~~vLDiG~G~G~~~~~l~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~ 116 (263)
T 2yqz_A 40 EPVFLELGVGTGRIALPLIARGYRYIAL--DADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH-L 116 (263)
T ss_dssp CCEEEEETCTTSTTHHHHHTTTCEEEEE--ESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG-G
T ss_pred CCEEEEeCCcCCHHHHHHHHCCCEEEEE--ECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchh-h
Confidence 3467999999999999999999999998 6778999988876 348999999999999899999999999994 5
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeeccccC-cC--------------------------cHHHHHHHHHHcCCEEEEE
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG-SQ--------------------------LNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~-~~--------------------------~~~~~~~ll~~~Gfk~l~~ 404 (430)
.++ ...++.++.|+|||||++++. +...+ .. ..+.+..+++++||+.+.+
T Consensus 117 ~~~--~~~~l~~~~~~L~pgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 193 (263)
T 2yqz_A 117 VPD--WPKVLAEAIRVLKPGGALLEG-WDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRTR 193 (263)
T ss_dssp CTT--HHHHHHHHHHHEEEEEEEEEE-EEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred cCC--HHHHHHHHHHHCCCCcEEEEE-ecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCcceE
Confidence 665 788999999999999999886 22110 00 1234667888999986655
Q ss_pred E
Q 043503 405 N 405 (430)
Q Consensus 405 ~ 405 (430)
.
T Consensus 194 ~ 194 (263)
T 2yqz_A 194 E 194 (263)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-14 Score=144.74 Aligned_cols=124 Identities=19% Similarity=0.231 Sum_probs=102.5
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc---------C-----CeeEEEcccccC------CC
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR---------G-----LISMHISVSQRL------PF 334 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r---------g-----~i~~~~~d~~~l------pf 334 (430)
.+|||+|||+|.++..+++. +.+|+++ |+++.+++.++++ | .+.++++|+..+ ++
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~~~~~v~gv--D~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVGEHGKVIGV--DMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHTTTCEEEEE--ECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CEEEEecCccCHHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 45799999999999999886 5689988 7788999888876 3 589999999887 88
Q ss_pred CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc-------------------CcHHHHHHHHH
Q 043503 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-------------------QLNETYVPMLD 395 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-------------------~~~~~~~~ll~ 395 (430)
++++||+|+++.++++ .++ ...++.++.|+|||||+|++.++..... ...+.+..+++
T Consensus 163 ~~~~fD~V~~~~~l~~-~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 239 (383)
T 4fsd_A 163 PDSSVDIVISNCVCNL-STN--KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVA 239 (383)
T ss_dssp CTTCEEEEEEESCGGG-CSC--HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHH
T ss_pred CCCCEEEEEEccchhc-CCC--HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHH
Confidence 8999999999999854 666 7899999999999999999987654322 12367899999
Q ss_pred HcCCEEEEEEe
Q 043503 396 RIGFKKLRWNV 406 (430)
Q Consensus 396 ~~Gfk~l~~~~ 406 (430)
++||+.++...
T Consensus 240 ~aGF~~v~~~~ 250 (383)
T 4fsd_A 240 EAGFRDVRLVS 250 (383)
T ss_dssp HTTCCCEEEEE
T ss_pred HCCCceEEEEe
Confidence 99998775543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.8e-14 Score=134.51 Aligned_cols=124 Identities=19% Similarity=0.261 Sum_probs=100.0
Q ss_pred ccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 277 IRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
..+|||||||+|.++..++++ +.+|+++ |+++.+++.++++ + .+.++.+|...+++++++||+|++..++
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 115 (276)
T 3mgg_A 38 GAKVLEAGCGIGAQTVILAKNNPDAEITSI--DISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVL 115 (276)
T ss_dssp TCEEEETTCTTSHHHHHHHHHCTTSEEEEE--ESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechh
Confidence 346799999999999999998 6899988 6678888877665 3 3889999999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeecccc-----Cc----------------------CcHHHHHHHHHHcCCEE
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF-----GS----------------------QLNETYVPMLDRIGFKK 401 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~-----~~----------------------~~~~~~~~ll~~~Gfk~ 401 (430)
.+ +++ ...++.++.++|||||++++.+.... .. ...+.+..+++++||+.
T Consensus 116 ~~-~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 192 (276)
T 3mgg_A 116 EH-LQS--PEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEK 192 (276)
T ss_dssp GG-CSC--HHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEE
T ss_pred hh-cCC--HHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCe
Confidence 65 666 67899999999999999998653210 00 11245778999999998
Q ss_pred EEEE
Q 043503 402 LRWN 405 (430)
Q Consensus 402 l~~~ 405 (430)
+...
T Consensus 193 v~~~ 196 (276)
T 3mgg_A 193 IRVE 196 (276)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8766
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.8e-14 Score=131.25 Aligned_cols=129 Identities=12% Similarity=0.143 Sum_probs=100.0
Q ss_pred cEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----C-------CeeEEEcccccCCCCCCceeEEEE
Q 043503 278 RIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----G-------LISMHISVSQRLPFFENTLDIVHS 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----g-------~i~~~~~d~~~lpf~d~sfDlV~~ 344 (430)
.+|||+|||+|.++..+++++ .+|+++ |+++.+++.++++ + .+.++.+|+...++++++||+|+|
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 108 (219)
T 3jwg_A 31 KKVIDLGCGEGNLLSLLLKDKSFEQITGV--DVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATV 108 (219)
T ss_dssp CEEEEETCTTCHHHHHHHTSTTCCEEEEE--ESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEE
T ss_pred CEEEEecCCCCHHHHHHHhcCCCCEEEEE--ECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEE
Confidence 456999999999999999985 689988 6678888888765 1 589999999888888899999999
Q ss_pred ccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC------------------cHHHHH----HHHHHcCCEEE
Q 043503 345 MHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ------------------LNETYV----PMLDRIGFKKL 402 (430)
Q Consensus 345 ~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~------------------~~~~~~----~ll~~~Gfk~l 402 (430)
..++++ .++.....++.++.++|||||.++.......+.. ..+++. .++++.||++.
T Consensus 109 ~~~l~~-~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~ 187 (219)
T 3jwg_A 109 IEVIEH-LDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVR 187 (219)
T ss_dssp ESCGGG-CCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEE
T ss_pred HHHHHh-CCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEE
Confidence 999966 5654568999999999999997776543321000 123444 78899999887
Q ss_pred EEEeccc
Q 043503 403 RWNVGMK 409 (430)
Q Consensus 403 ~~~~~~k 409 (430)
-..++..
T Consensus 188 ~~~~g~~ 194 (219)
T 3jwg_A 188 FLQIGEI 194 (219)
T ss_dssp EEEESCC
T ss_pred EEecCCc
Confidence 7655554
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-13 Score=134.60 Aligned_cols=137 Identities=15% Similarity=0.112 Sum_probs=106.1
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d 336 (430)
++.++..+......+|||||||+|.++..++++ +.+|+++ |+++.+++.++++ | .+.++.+|...+ +
T Consensus 61 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~ 135 (302)
T 3hem_A 61 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGL--TLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---D 135 (302)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEE--ECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---C
T ss_pred HHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEE--ECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---C
Confidence 444555444344456799999999999999998 9999988 6778888887765 3 488999998776 7
Q ss_pred CceeEEEEccchhhcCC------chhHHHHHHHHHHhccCCcEEEEeeccccCc--------------------------
Q 043503 337 NTLDIVHSMHVLSNWIP------DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-------------------------- 384 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~------d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-------------------------- 384 (430)
++||+|++..+++|+.+ ......++.++.|+|||||++++..+.....
T Consensus 136 ~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T 3hem_A 136 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 215 (302)
T ss_dssp CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC
Confidence 89999999999976422 1356899999999999999999977653221
Q ss_pred -----CcHHHHHHHHHHcCCEEEEEEe
Q 043503 385 -----QLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 385 -----~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
...+.+..+++++||+++....
T Consensus 216 p~~~~~s~~~~~~~l~~aGf~~~~~~~ 242 (302)
T 3hem_A 216 PGGRLPRISQVDYYSSNAGWKVERYHR 242 (302)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHhCCcEEEEEEe
Confidence 1134688899999999988753
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=129.15 Aligned_cols=119 Identities=11% Similarity=0.149 Sum_probs=97.4
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc-CCeeEEEcccccCCCCCCceeEEEEccchhhcCCchh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR-GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r-g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
.+|||+|||+|.++..+++++.+++++ |+++.+++.++++ ..+.+..+| +++++++||+|++..++++ .++
T Consensus 19 ~~vLDiG~G~G~~~~~l~~~~~~v~~v--D~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~-~~~-- 90 (170)
T 3i9f_A 19 GVIVDYGCGNGFYCKYLLEFATKLYCI--DINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHD-MDD-- 90 (170)
T ss_dssp EEEEEETCTTCTTHHHHHTTEEEEEEE--CSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTT-CSC--
T ss_pred CeEEEECCCCCHHHHHHHhhcCeEEEE--eCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhc-ccC--
Confidence 456999999999999999986688888 7778999988876 447888888 6778899999999999965 455
Q ss_pred HHHHHHHHHHhccCCcEEEEeeccccCcC---------cHHHHHHHHHHcCCEEEEEEe
Q 043503 357 LEFTLYDIYRLLRPGGIFWLDRFFCFGSQ---------LNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 357 l~~~L~ei~RvLrPGG~lvl~~f~~~~~~---------~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
...++.++.|+|||||++++.++...... ..+.+..+++ ||+.++...
T Consensus 91 ~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~ 147 (170)
T 3i9f_A 91 KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFN 147 (170)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEEC
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccC
Confidence 78999999999999999999877643321 2356788887 999887653
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=8.1e-14 Score=126.11 Aligned_cols=124 Identities=13% Similarity=0.167 Sum_probs=98.0
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+|||+|||+|.++..+++++.+++++ |+++.+++.++++ + .+.++.+|+..+++ +++||+|++..++++
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~- 109 (199)
T 2xvm_A 34 GKTLDLGCGNGRNSLYLAANGYDVDAW--DKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMF- 109 (199)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGG-
T ss_pred CeEEEEcCCCCHHHHHHHHCCCeEEEE--ECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhh-
Confidence 456999999999999999999999998 6678888777653 3 48899999998887 889999999999965
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeeccccCc----------CcHHHHHHHHHHcCCEEEEEEec
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS----------QLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~----------~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
.+......++.++.++|+|||++++..++.... -..+++.++++. |+++.+...
T Consensus 110 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 110 LEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYNED 173 (199)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEeccc
Confidence 554458899999999999999988766543211 023567777776 998876543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.2e-14 Score=130.95 Aligned_cols=129 Identities=11% Similarity=0.107 Sum_probs=99.5
Q ss_pred cEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----C-------CeeEEEcccccCCCCCCceeEEEE
Q 043503 278 RIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----G-------LISMHISVSQRLPFFENTLDIVHS 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----g-------~i~~~~~d~~~lpf~d~sfDlV~~ 344 (430)
.+|||+|||+|.++..+++++ .+|+++ |+++.+++.++++ + .+.++.+|+...+.++++||+|++
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 108 (217)
T 3jwh_A 31 RRVIDLGCGQGNLLKILLKDSFFEQITGV--DVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATV 108 (217)
T ss_dssp CEEEEETCTTCHHHHHHHHCTTCSEEEEE--ESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEE
T ss_pred CEEEEeCCCCCHHHHHHHhhCCCCEEEEE--ECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEee
Confidence 456999999999999999985 689988 6678888888765 1 588999998877777789999999
Q ss_pred ccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecccc--------------CcC----cHHHHH----HHHHHcCCEEE
Q 043503 345 MHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF--------------GSQ----LNETYV----PMLDRIGFKKL 402 (430)
Q Consensus 345 ~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~--------------~~~----~~~~~~----~ll~~~Gfk~l 402 (430)
..++++ +++.....++.++.++|||||.+++...... ... ..+++. .++++.||++.
T Consensus 109 ~~~l~~-~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~ 187 (217)
T 3jwh_A 109 IEVIEH-LDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQ 187 (217)
T ss_dssp ESCGGG-CCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEEE
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceEE
Confidence 999966 5654568999999999999998877643211 000 223444 88999999987
Q ss_pred EEEeccc
Q 043503 403 RWNVGMK 409 (430)
Q Consensus 403 ~~~~~~k 409 (430)
...++..
T Consensus 188 ~~~~g~~ 194 (217)
T 3jwh_A 188 FQPIGEA 194 (217)
T ss_dssp ECCCSCC
T ss_pred EEecCCc
Confidence 6554443
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.3e-14 Score=125.79 Aligned_cols=126 Identities=16% Similarity=0.132 Sum_probs=103.0
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcC-CeeEEEcccccCCCCCCceeEEEEc-cchhhcCCch
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRG-LISMHISVSQRLPFFENTLDIVHSM-HVLSNWIPDS 355 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg-~i~~~~~d~~~lpf~d~sfDlV~~~-~~L~~~~~d~ 355 (430)
.+|||+|||+|.++..+++.+.+++++ |+++.+++.++++. .+.++.+|+..+++++++||+|++. .++++ .+..
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~~v~~~--D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~-~~~~ 124 (195)
T 3cgg_A 48 AKILDAGCGQGRIGGYLSKQGHDVLGT--DLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGF-LAED 124 (195)
T ss_dssp CEEEEETCTTTHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGG-SCHH
T ss_pred CeEEEECCCCCHHHHHHHHCCCcEEEE--cCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhh-cChH
Confidence 456999999999999999999999988 66788888888773 3789999998888888999999998 56644 5544
Q ss_pred hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEec
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
....++.++.++|+|||.+++...... ....+.+..++++.||+++.....
T Consensus 125 ~~~~~l~~~~~~l~~~G~l~~~~~~~~-~~~~~~~~~~l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 125 GREPALANIHRALGADGRAVIGFGAGR-GWVFGDFLEVAERVGLELENAFES 175 (195)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEETTS-SCCHHHHHHHHHHHTEEEEEEESS
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeCCCC-CcCHHHHHHHHHHcCCEEeeeecc
Confidence 578999999999999999998754322 224577899999999999876543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-14 Score=136.14 Aligned_cols=124 Identities=13% Similarity=0.092 Sum_probs=98.1
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C-CeeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G-LISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g-~i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||||||+|.++..+++. +.+|+++ |+++.+++.++++ + .+.++++|+..+++ +++||+|++..+++
T Consensus 24 ~~vLDiGcG~G~~~~~l~~~~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~l~ 100 (284)
T 3gu3_A 24 VHIVDYGCGYGYLGLVLMPLLPEGSKYTGI--DSGETLLAEARELFRLLPYDSEFLEGDATEIEL-NDKYDIAICHAFLL 100 (284)
T ss_dssp CEEEEETCTTTHHHHHHTTTSCTTCEEEEE--ESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC-SSCEEEEEEESCGG
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHhcCCceEEEEcchhhcCc-CCCeeEEEECChhh
Confidence 45699999999999999988 5899998 6678888877765 3 38899999999887 46999999999986
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeecc---------ccCcC--------------------------cHHHHHHHH
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF---------CFGSQ--------------------------LNETYVPML 394 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~---------~~~~~--------------------------~~~~~~~ll 394 (430)
+ .++ ...++.++.|+|||||++++.++. +.+.. ..+.+..++
T Consensus 101 ~-~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 177 (284)
T 3gu3_A 101 H-MTT--PETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYL 177 (284)
T ss_dssp G-CSS--HHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHHHHH
T ss_pred c-CCC--HHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHHHHH
Confidence 5 566 689999999999999999986543 11100 123467889
Q ss_pred HHcCCEEEEEEec
Q 043503 395 DRIGFKKLRWNVG 407 (430)
Q Consensus 395 ~~~Gfk~l~~~~~ 407 (430)
+++||+.+.....
T Consensus 178 ~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 178 SELGVKNIECRVS 190 (284)
T ss_dssp HHTTCEEEEEEEC
T ss_pred HHcCCCeEEEEEc
Confidence 9999998876433
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.9e-14 Score=137.21 Aligned_cols=135 Identities=17% Similarity=0.161 Sum_probs=105.8
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d 336 (430)
++.++...+.....+|||||||+|.++..++++ +.+|+++ |+++.+++.++++ | .+.++.+|...++
T Consensus 79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--- 153 (318)
T 2fk8_A 79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGL--TLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--- 153 (318)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEE--ESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---
T ss_pred HHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEE--ECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---
Confidence 455555544444456799999999999999988 9999998 6778888888765 3 3888999988775
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc-------------------------------C
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-------------------------------Q 385 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-------------------------------~ 385 (430)
++||+|++..+++| +++.....++.++.++|||||.+++..+..... .
T Consensus 154 ~~fD~v~~~~~l~~-~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (318)
T 2fk8_A 154 EPVDRIVSIEAFEH-FGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLP 232 (318)
T ss_dssp CCCSEEEEESCGGG-TCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred CCcCEEEEeChHHh-cCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCC
Confidence 78999999999966 543458899999999999999999977654221 0
Q ss_pred cHHHHHHHHHHcCCEEEEEE
Q 043503 386 LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 386 ~~~~~~~ll~~~Gfk~l~~~ 405 (430)
..+.+..+++++||+++.+.
T Consensus 233 s~~~~~~~l~~aGf~~~~~~ 252 (318)
T 2fk8_A 233 STEMMVEHGEKAGFTVPEPL 252 (318)
T ss_dssp CHHHHHHHHHHTTCBCCCCE
T ss_pred CHHHHHHHHHhCCCEEEEEE
Confidence 23568889999999988754
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-13 Score=127.36 Aligned_cols=110 Identities=15% Similarity=0.227 Sum_probs=87.4
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc-----CCeeEEEcccccCCCCCCce
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR-----GLISMHISVSQRLPFFENTL 339 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r-----g~i~~~~~d~~~lpf~d~sf 339 (430)
++.++..++. ..+|||+|||+|.++..+++++.+++++ |+++.+++.++++ ..+.++.+|+..+++++++|
T Consensus 29 ~~~l~~~~~~--~~~vLDlG~G~G~~~~~l~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 104 (227)
T 1ve3_A 29 EPLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGFEVVGV--DISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTF 104 (227)
T ss_dssp HHHHHHSCCS--CCEEEEETCTTSHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCE
T ss_pred HHHHHHhcCC--CCeEEEEeccCCHHHHHHHHcCCEEEEE--ECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcE
Confidence 4444444443 3467999999999999999998899988 6678888877665 44889999999888888999
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
|+|++..++++ ........++.++.++|+|||.+++.++
T Consensus 105 D~v~~~~~~~~-~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 105 DYVIFIDSIVH-FEPLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp EEEEEESCGGG-CCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEcCchHh-CCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 99999988533 3333478899999999999999988654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=126.17 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=103.2
Q ss_pred HHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEccccc--CCCCCCceeEEEEc
Q 043503 268 VLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQR--LPFFENTLDIVHSM 345 (430)
Q Consensus 268 lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~--lpf~d~sfDlV~~~ 345 (430)
++..++ ....+|||+|||+|.++..+++.+.+++++ |+++.+++.++++. ..++.+|+.. .++++++||+|++.
T Consensus 25 l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~--D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v~~~ 100 (230)
T 3cc8_A 25 LLKHIK-KEWKEVLDIGCSSGALGAAIKENGTRVSGI--EAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCVIFG 100 (230)
T ss_dssp HHTTCC-TTCSEEEEETCTTSHHHHHHHTTTCEEEEE--ESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEEEEE
T ss_pred HHHHhc-cCCCcEEEeCCCCCHHHHHHHhcCCeEEEE--eCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEEEEC
Confidence 334343 233567999999999999999988889988 66788888888765 3788888876 66778999999999
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC--------------------------cCcHHHHHHHHHHcCC
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG--------------------------SQLNETYVPMLDRIGF 399 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~--------------------------~~~~~~~~~ll~~~Gf 399 (430)
.+++| .++ ...++.++.++|+|||++++....... ....+.+..+++++||
T Consensus 101 ~~l~~-~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 177 (230)
T 3cc8_A 101 DVLEH-LFD--PWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGY 177 (230)
T ss_dssp SCGGG-SSC--HHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTE
T ss_pred Chhhh-cCC--HHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCC
Confidence 99966 555 678999999999999999987532100 0124679999999999
Q ss_pred EEEEEEe
Q 043503 400 KKLRWNV 406 (430)
Q Consensus 400 k~l~~~~ 406 (430)
+++....
T Consensus 178 ~~~~~~~ 184 (230)
T 3cc8_A 178 SISKVDR 184 (230)
T ss_dssp EEEEEEE
T ss_pred eEEEEEe
Confidence 9887664
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.9e-14 Score=129.01 Aligned_cols=105 Identities=16% Similarity=0.245 Sum_probs=87.0
Q ss_pred CCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCCCceeEEEEccc
Q 043503 272 KPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFENTLDIVHSMHV 347 (430)
Q Consensus 272 ~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d~sfDlV~~~~~ 347 (430)
.+.....+|||+|||+|.++..+++++.+|+++ |+++.+++.++++ +.+.++++|+..++ ++++||+|++..+
T Consensus 47 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~ 123 (216)
T 3ofk_A 47 LSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVI--DVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEV 123 (216)
T ss_dssp TTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEE--ESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESC
T ss_pred cccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEE--ECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccH
Confidence 333444567999999999999999998889988 6778999888876 34899999999888 6889999999999
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
++|+.+......++.++.++|||||++++..+
T Consensus 124 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 124 LYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 96643334457889999999999999999753
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.51 E-value=9.1e-14 Score=129.74 Aligned_cols=97 Identities=18% Similarity=0.217 Sum_probs=82.9
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C-CeeEEEcccccCCCCCCceeEEEEcc-chhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G-LISMHISVSQRLPFFENTLDIVHSMH-VLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g-~i~~~~~d~~~lpf~d~sfDlV~~~~-~L~~~ 351 (430)
.+|||+|||+|.++..+++++.+++++ |+++.+++.++++ + .+.++++|+..++++ ++||+|++.. +++|+
T Consensus 39 ~~vLdiG~G~G~~~~~l~~~~~~~~~~--D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~ 115 (246)
T 1y8c_A 39 DDYLDLACGTGNLTENLCPKFKNTWAV--DLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYI 115 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSSEEEEE--CSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGGC
T ss_pred CeEEEeCCCCCHHHHHHHHCCCcEEEE--ECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCcccccc
Confidence 457999999999999999999999988 7788888887765 3 478999999988876 8999999998 89664
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
........++.++.++|+|||+++++
T Consensus 116 ~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 116 IDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp CSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 33345889999999999999999984
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=125.27 Aligned_cols=123 Identities=19% Similarity=0.140 Sum_probs=97.7
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C-CeeEEEcccccCCCCCCceeEEEEccchhhcCC
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G-LISMHISVSQRLPFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g-~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~ 353 (430)
+|||+|||+|.++..+++.+.+|+++ |+++.+++.++++ + .+.++.+|+..+++++++||+|++.. .++ +
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~-~ 106 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAV--DQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHL-P 106 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEE--CSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCC-C
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEE--ECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcC-C
Confidence 56999999999999999999999988 7778888887765 3 47888999999888889999999953 243 4
Q ss_pred chhHHHHHHHHHHhccCCcEEEEeeccccCc-------------CcHHHHHHHHHHcCCEEEEEEecc
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-------------QLNETYVPMLDRIGFKKLRWNVGM 408 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-------------~~~~~~~~ll~~~Gfk~l~~~~~~ 408 (430)
......++.++.++|+|||++++..+..... -..+++..+++ ||+++......
T Consensus 107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~~ 172 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNLE 172 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEEE
Confidence 3457899999999999999999987543221 12356778887 99988766443
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=128.38 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=82.5
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcC-CeeEEEcccccCCCCCCceeEEEEcc-chhhcCCch
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRG-LISMHISVSQRLPFFENTLDIVHSMH-VLSNWIPDS 355 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg-~i~~~~~d~~~lpf~d~sfDlV~~~~-~L~~~~~d~ 355 (430)
.+|||+|||+|.++..+++++.+++++ |+++.+++.++++. .+.++.+|+..+++ +++||+|+|.. +++|.....
T Consensus 42 ~~vLdiG~G~G~~~~~l~~~~~~v~~~--D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~ 118 (239)
T 3bxo_A 42 SSLLDVACGTGTHLEHFTKEFGDTAGL--ELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTE 118 (239)
T ss_dssp CEEEEETCTTSHHHHHHHHHHSEEEEE--ESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHH
T ss_pred CeEEEecccCCHHHHHHHHhCCcEEEE--eCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHH
Confidence 456999999999999999987789988 77799999988773 48899999988887 78999999755 775533334
Q ss_pred hHHHHHHHHHHhccCCcEEEEeec
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
....++.++.++|+|||+++++.+
T Consensus 119 ~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 119 ELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp HHHHHHHHHHHTEEEEEEEEECCC
T ss_pred HHHHHHHHHHHhcCCCeEEEEEec
Confidence 578999999999999999999753
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=133.74 Aligned_cols=126 Identities=18% Similarity=0.191 Sum_probs=90.6
Q ss_pred ccEEEEEcCCccHHHHH----HHHc--CCEE--EEEecCCChhHHHHHHhc-----C--CeeE--EEcccccCC------
Q 043503 277 IRIGLDIGGGTGTFAAR----MRER--NVTI--ITTSLNLDGPFNSFIASR-----G--LISM--HISVSQRLP------ 333 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~----La~~--g~~V--v~vdiD~s~~~le~a~~r-----g--~i~~--~~~d~~~lp------ 333 (430)
..+|||||||+|.++.. ++.+ ++.| +++ |+|+.|++.++++ + .+.+ ..++.+.++
T Consensus 53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~v--D~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVV--EPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEE--CSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEE--eCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 34679999999976653 3333 4544 665 8899999888765 2 2333 445555543
Q ss_pred CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC--------------------cCcHHHHHHH
Q 043503 334 FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG--------------------SQLNETYVPM 393 (430)
Q Consensus 334 f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~--------------------~~~~~~~~~l 393 (430)
+++++||+|++..+++ |+++ +..+|.++.|+|||||++++..+.... ....+++..+
T Consensus 131 ~~~~~fD~V~~~~~l~-~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (292)
T 2aot_A 131 KELQKWDFIHMIQMLY-YVKD--IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQM 207 (292)
T ss_dssp TCCCCEEEEEEESCGG-GCSC--HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHH
T ss_pred cCCCceeEEEEeeeee-ecCC--HHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHH
Confidence 5689999999999995 5777 789999999999999999986432110 0123578899
Q ss_pred HHHcCCEEEEEEec
Q 043503 394 LDRIGFKKLRWNVG 407 (430)
Q Consensus 394 l~~~Gfk~l~~~~~ 407 (430)
++++||+.......
T Consensus 208 l~~aGf~~~~~~~~ 221 (292)
T 2aot_A 208 LDNLGLKYECYDLL 221 (292)
T ss_dssp HHHHTCCEEEEEEC
T ss_pred HHHCCCceEEEEec
Confidence 99999998875544
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.50 E-value=4e-14 Score=135.94 Aligned_cols=129 Identities=12% Similarity=0.090 Sum_probs=96.5
Q ss_pred ccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc-----------------------------------C
Q 043503 277 IRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR-----------------------------------G 320 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r-----------------------------------g 320 (430)
..+|||||||+|.++..++..++ +|+++ |+|+.|++.|+++ .
T Consensus 56 g~~vLDiGCG~G~~~~~~~~~~~~~v~g~--D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T 2a14_A 56 GDTLIDIGSGPTIYQVLAACDSFQDITLS--DFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 133 (263)
T ss_dssp EEEEEESSCTTCCGGGTTGGGTEEEEEEE--ESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CceEEEeCCCccHHHHHHHHhhhcceeec--cccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence 35679999999998888777776 58888 7789988877642 0
Q ss_pred Cee-EEEccccc-CCC---CCCceeEEEEccchhhcCCc-hhHHHHHHHHHHhccCCcEEEEeeccccC-----c-----
Q 043503 321 LIS-MHISVSQR-LPF---FENTLDIVHSMHVLSNWIPD-SMLEFTLYDIYRLLRPGGIFWLDRFFCFG-----S----- 384 (430)
Q Consensus 321 ~i~-~~~~d~~~-lpf---~d~sfDlV~~~~~L~~~~~d-~~l~~~L~ei~RvLrPGG~lvl~~f~~~~-----~----- 384 (430)
.+. ++++|... .|+ .+++||+|+++.++++..++ .....++.++.|+|||||+|+++...... .
T Consensus 134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~ 213 (263)
T 2a14_A 134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC 213 (263)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeec
Confidence 122 77888766 343 36799999999999764333 34678999999999999999998644221 0
Q ss_pred --CcHHHHHHHHHHcCCEEEEEEec
Q 043503 385 --QLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 385 --~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
-..+++..+++++||+++.+...
T Consensus 214 ~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 214 VALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp CCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred cccCHHHHHHHHHHCCCEEEEEeec
Confidence 12467899999999999887643
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.4e-14 Score=137.67 Aligned_cols=126 Identities=15% Similarity=0.113 Sum_probs=99.3
Q ss_pred cEEEEEcCCccHHHHHHHH--c-CCEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCCCCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRE--R-NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLPFFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~--~-g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lpf~d~sfDlV~~~~~ 347 (430)
.+|||||||+|.++..++. . +.+|+++ |+++.+++.++++ |. +.++++|+..++++ ++||+|++..+
T Consensus 120 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~ 196 (305)
T 3ocj_A 120 CVVASVPCGWMSELLALDYSACPGVQLVGI--DYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGL 196 (305)
T ss_dssp CEEEETTCTTCHHHHTSCCTTCTTCEEEEE--ESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSS
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCeEEEE--ECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECCh
Confidence 4569999999999999952 2 6799988 6678888888765 22 88999999999987 99999999998
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC--------------c---------------------CcHHHHHH
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG--------------S---------------------QLNETYVP 392 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~--------------~---------------------~~~~~~~~ 392 (430)
++|+.+......++.++.++|||||++++.++.... . ...+.+.+
T Consensus 197 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (305)
T 3ocj_A 197 NIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRA 276 (305)
T ss_dssp GGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHH
Confidence 866434433445899999999999999997744210 0 12467889
Q ss_pred HHHHcCCEEEEEEe
Q 043503 393 MLDRIGFKKLRWNV 406 (430)
Q Consensus 393 ll~~~Gfk~l~~~~ 406 (430)
+++++||+.++...
T Consensus 277 ~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 277 QLEEAGFTDLRFED 290 (305)
T ss_dssp HHHHTTCEEEEEEC
T ss_pred HHHHCCCEEEEEEc
Confidence 99999999988764
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=134.18 Aligned_cols=128 Identities=23% Similarity=0.194 Sum_probs=93.5
Q ss_pred cEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc---------------------C---------------
Q 043503 278 RIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR---------------------G--------------- 320 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r---------------------g--------------- 320 (430)
.+|||||||+|.++..++.. +.+|+++ |+++.|++.|+++ |
T Consensus 73 ~~vLDiGcG~G~~~~l~~~~~~~~v~gv--D~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 73 RTLIDIGSGPTVYQLLSACSHFEDITMT--DFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp SEEEEETCTTCCGGGTTGGGGCSEEEEE--CSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHhhccCCCeEEEe--CCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 46799999999965544443 7799988 7789999877652 1
Q ss_pred CeeEEEccccc-CCC-----CCCceeEEEEccchhhcCCc-hhHHHHHHHHHHhccCCcEEEEeecccc-----C-----
Q 043503 321 LISMHISVSQR-LPF-----FENTLDIVHSMHVLSNWIPD-SMLEFTLYDIYRLLRPGGIFWLDRFFCF-----G----- 383 (430)
Q Consensus 321 ~i~~~~~d~~~-lpf-----~d~sfDlV~~~~~L~~~~~d-~~l~~~L~ei~RvLrPGG~lvl~~f~~~-----~----- 383 (430)
.+.++.+|+.. +|+ ++++||+|+++.++++..++ .....+|.++.|+|||||+|++...... +
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~ 230 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLT 230 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEE
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeee
Confidence 13456668776 653 45679999999999653322 2478999999999999999998643321 0
Q ss_pred --cCcHHHHHHHHHHcCCEEEEEEec
Q 043503 384 --SQLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 384 --~~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
.-..+.+..+++++||+++.+...
T Consensus 231 ~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 231 VVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred eccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 013467999999999999887643
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.8e-13 Score=125.90 Aligned_cols=119 Identities=20% Similarity=0.340 Sum_probs=97.9
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHH
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLE 358 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~ 358 (430)
+|||+|||+|.++..++++ +++ |+++.+++.++++ .+.++.+|+..+++++++||+|++..++++ .++ ..
T Consensus 50 ~vLDiG~G~G~~~~~l~~~----~~v--D~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~--~~ 119 (219)
T 1vlm_A 50 RGVEIGVGTGRFAVPLKIK----IGV--EPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICF-VDD--PE 119 (219)
T ss_dssp CEEEETCTTSTTHHHHTCC----EEE--ESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGG-SSC--HH
T ss_pred cEEEeCCCCCHHHHHHHHH----hcc--CCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhh-ccC--HH
Confidence 4599999999999999876 555 7789999999888 568889999999988899999999999965 555 78
Q ss_pred HHHHHHHHhccCCcEEEEeeccccCc--------------------CcHHHHHHHHHHcCCEEEEEEec
Q 043503 359 FTLYDIYRLLRPGGIFWLDRFFCFGS--------------------QLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 359 ~~L~ei~RvLrPGG~lvl~~f~~~~~--------------------~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
.++.++.++|+|||++++..+..... -..+.+..+++++||++++....
T Consensus 120 ~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 120 RALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 89999999999999999975432110 13467899999999998876643
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.1e-14 Score=143.62 Aligned_cols=137 Identities=17% Similarity=0.269 Sum_probs=105.4
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCee----EEEcccccCCCCCCcee
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLIS----MHISVSQRLPFFENTLD 340 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~----~~~~d~~~lpf~d~sfD 340 (430)
.+.++.........+|||||||+|.++..+++++.+|+++ |+++.+++.+++++.-. +...+.+.+++++++||
T Consensus 96 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gv--D~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD 173 (416)
T 4e2x_A 96 ARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGF--EPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPAN 173 (416)
T ss_dssp HHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEE--CCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEE
T ss_pred HHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEE--CCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEE
Confidence 4455555443444567999999999999999999999988 78899999999886521 22345566777789999
Q ss_pred EEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc------------cCcC----cHHHHHHHHHHcCCEEEEE
Q 043503 341 IVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC------------FGSQ----LNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 341 lV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~------------~~~~----~~~~~~~ll~~~Gfk~l~~ 404 (430)
+|++.++++| +++ ...++.++.|+|||||++++..... ..+. ..+.+..+++++||+++..
T Consensus 174 ~I~~~~vl~h-~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~ 250 (416)
T 4e2x_A 174 VIYAANTLCH-IPY--VQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDV 250 (416)
T ss_dssp EEEEESCGGG-CTT--HHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEE
T ss_pred EEEECChHHh-cCC--HHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEE
Confidence 9999999966 555 8899999999999999999864321 0011 2367999999999998876
Q ss_pred Ee
Q 043503 405 NV 406 (430)
Q Consensus 405 ~~ 406 (430)
..
T Consensus 251 ~~ 252 (416)
T 4e2x_A 251 QR 252 (416)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.4e-14 Score=135.96 Aligned_cols=126 Identities=19% Similarity=0.211 Sum_probs=95.2
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc------------------------------------
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR------------------------------------ 319 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r------------------------------------ 319 (430)
.+|||||||+|.++..++++ +.+|+++ |+++.+++.|+++
T Consensus 48 ~~VLDiGCG~G~~~~~la~~~~~~~v~gv--Dis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 48 RDVLDLGCNVGHLTLSIACKWGPSRMVGL--DIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp SEEEEESCTTCHHHHHHHHHTCCSEEEEE--ESCHHHHHHHHHTC-----------------------------------
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 46799999999999999998 6899998 6678888888765
Q ss_pred ----------------------------CCeeEEEcccccCC-----CCCCceeEEEEccchhhcC---CchhHHHHHHH
Q 043503 320 ----------------------------GLISMHISVSQRLP-----FFENTLDIVHSMHVLSNWI---PDSMLEFTLYD 363 (430)
Q Consensus 320 ----------------------------g~i~~~~~d~~~lp-----f~d~sfDlV~~~~~L~~~~---~d~~l~~~L~e 363 (430)
..+.+.++|+...+ +.+++||+|+|..++.+.. .+..+..++.+
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 35788888876543 5688999999998884321 34458899999
Q ss_pred HHHhccCCcEEEEeeccc----cCcC--------------cHHHHHHHHHH--cCCEEEEEE
Q 043503 364 IYRLLRPGGIFWLDRFFC----FGSQ--------------LNETYVPMLDR--IGFKKLRWN 405 (430)
Q Consensus 364 i~RvLrPGG~lvl~~f~~----~~~~--------------~~~~~~~ll~~--~Gfk~l~~~ 405 (430)
+.++|+|||+|++...-. .... ..+.+..++.+ +||+.++..
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~ 267 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELV 267 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEe
Confidence 999999999999853210 0000 12456778888 999887754
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.1e-13 Score=127.93 Aligned_cols=131 Identities=17% Similarity=0.137 Sum_probs=100.5
Q ss_pred CccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C------------------------------
Q 043503 276 TIRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G------------------------------ 320 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g------------------------------ 320 (430)
...+|||+|||+|.++..++..+. +|+++ |+++.+++.++++ +
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gv--D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESFTEIIVS--DYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTEEEEEEE--ESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhcccCeEEEe--cCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 345679999999999999998887 88888 7788888887654 1
Q ss_pred -Ce-eEEEcccccCC-CCC---CceeEEEEccchhhcCCc-hhHHHHHHHHHHhccCCcEEEEeeccccC----------
Q 043503 321 -LI-SMHISVSQRLP-FFE---NTLDIVHSMHVLSNWIPD-SMLEFTLYDIYRLLRPGGIFWLDRFFCFG---------- 383 (430)
Q Consensus 321 -~i-~~~~~d~~~lp-f~d---~sfDlV~~~~~L~~~~~d-~~l~~~L~ei~RvLrPGG~lvl~~f~~~~---------- 383 (430)
.+ .++.+|+...+ +++ ++||+|++..++++..+. .....++.++.|+|||||+|++.......
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 213 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFS 213 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccc
Confidence 15 78888887754 355 899999999999643322 24788999999999999999987643210
Q ss_pred --cCcHHHHHHHHHHcCCEEEEEEecc
Q 043503 384 --SQLNETYVPMLDRIGFKKLRWNVGM 408 (430)
Q Consensus 384 --~~~~~~~~~ll~~~Gfk~l~~~~~~ 408 (430)
.-..+.+..+++++||+++.+....
T Consensus 214 ~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 214 SLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred ccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 0123578999999999999877543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.7e-13 Score=132.48 Aligned_cols=133 Identities=14% Similarity=0.100 Sum_probs=102.7
Q ss_pred HHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-------CCeeEEEcccccCCCCCC
Q 043503 267 QVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-------GLISMHISVSQRLPFFEN 337 (430)
Q Consensus 267 ~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~~~lpf~d~ 337 (430)
.++...+.....+|||+|||+|.++..++++ +.+++++ |+ +.+++.++++ +.+.+..+|+. .+++.
T Consensus 160 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~--D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~- 234 (332)
T 3i53_A 160 GIAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVL--DL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA- 234 (332)
T ss_dssp TGGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEE--EC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-
T ss_pred HHHHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEe--cC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-
Confidence 3444444445567899999999999999986 6678877 66 7888777654 34899999986 45555
Q ss_pred ceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc------------------CcHHHHHHHHHHcCC
Q 043503 338 TLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS------------------QLNETYVPMLDRIGF 399 (430)
Q Consensus 338 sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~------------------~~~~~~~~ll~~~Gf 399 (430)
+||+|++.+++++| ++.....+|+++.++|+|||++++.++...+. ...++|..+++++||
T Consensus 235 ~~D~v~~~~vlh~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 313 (332)
T 3i53_A 235 GAGGYVLSAVLHDW-DDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGL 313 (332)
T ss_dssp SCSEEEEESCGGGS-CHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTE
T ss_pred CCcEEEEehhhccC-CHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCC
Confidence 89999999999765 45457899999999999999999987654321 124679999999999
Q ss_pred EEEEEE
Q 043503 400 KKLRWN 405 (430)
Q Consensus 400 k~l~~~ 405 (430)
+.++..
T Consensus 314 ~~~~~~ 319 (332)
T 3i53_A 314 AVRAAH 319 (332)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998765
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-13 Score=129.37 Aligned_cols=98 Identities=19% Similarity=0.367 Sum_probs=85.9
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhH
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSML 357 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l 357 (430)
.+|||+|||+|.++..+++++.+|+++ |+++.+++.++++....++.+|+..+++++++||+|++..++.|+.++ .
T Consensus 56 ~~vLDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~--~ 131 (260)
T 2avn_A 56 CRVLDLGGGTGKWSLFLQERGFEVVLV--DPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN--K 131 (260)
T ss_dssp CEEEEETCTTCHHHHHHHTTTCEEEEE--ESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC--H
T ss_pred CeEEEeCCCcCHHHHHHHHcCCeEEEE--eCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc--H
Confidence 457999999999999999999999988 777999999988754348889999999889999999998888787666 8
Q ss_pred HHHHHHHHHhccCCcEEEEeec
Q 043503 358 EFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 358 ~~~L~ei~RvLrPGG~lvl~~f 379 (430)
..++.++.++|||||.+++..+
T Consensus 132 ~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 132 DKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCeEEEEEeC
Confidence 8999999999999999998653
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-13 Score=124.39 Aligned_cols=96 Identities=23% Similarity=0.316 Sum_probs=83.1
Q ss_pred ccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc-CCeeEEEcccccCCCCCCceeEEEEccchhhcCCc
Q 043503 277 IRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR-GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r-g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d 354 (430)
..+|||+|||+|.++..+ +. +++++ |+++.+++.++++ ..+.++.+|+..+++++++||+|++..+++| .++
T Consensus 37 ~~~vLdiG~G~G~~~~~l---~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~ 110 (211)
T 2gs9_A 37 GESLLEVGAGTGYWLRRL---PYPQKVGV--EPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEF-VED 110 (211)
T ss_dssp CSEEEEETCTTCHHHHHC---CCSEEEEE--CCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTT-CSC
T ss_pred CCeEEEECCCCCHhHHhC---CCCeEEEE--eCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhh-cCC
Confidence 346799999999999888 66 88888 7789999998887 3578899999999998999999999999965 555
Q ss_pred hhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 355 SMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
...++.++.|+|||||.+++..+.
T Consensus 111 --~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 111 --VERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp --HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred --HHHHHHHHHHHcCCCCEEEEEecC
Confidence 789999999999999999997654
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=131.40 Aligned_cols=99 Identities=18% Similarity=0.217 Sum_probs=81.8
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCC-CCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPF-FENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf-~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.++..+++.+. +|+++ |+++.+++.++++ + .+.++++|+..+++ ++++||+|++..++
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 143 (298)
T 1ri5_A 66 DSVLDLGCGKGGDLLKYERAGIGEYYGV--DIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 143 (298)
T ss_dssp CEEEEETCTTTTTHHHHHHHTCSEEEEE--ESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CeEEEECCCCCHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchh
Confidence 4569999999999999988865 89988 6778888887765 2 27899999998887 68899999999888
Q ss_pred hhc-CCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 349 SNW-IPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 349 ~~~-~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
++. ........++.++.|+|+|||++++..
T Consensus 144 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (298)
T 1ri5_A 144 HYAFSTSESLDIAQRNIARHLRPGGYFIMTV 174 (298)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 542 333457889999999999999999865
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=133.63 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=83.4
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----------CCeeEEEcccccCC---CCCCceeEEEE
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----------GLISMHISVSQRLP---FFENTLDIVHS 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~lp---f~d~sfDlV~~ 344 (430)
.+|||||||+|.++..+++++.+|+++ |+++.|++.++++ ..+.+..+++..++ +++++||+|+|
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~ 136 (293)
T 3thr_A 59 HRVLDVACGTGVDSIMLVEEGFSVTSV--DASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC 136 (293)
T ss_dssp CEEEETTCTTSHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred CEEEEecCCCCHHHHHHHHCCCeEEEE--ECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEE
Confidence 456999999999999999999999998 7778999888654 12677888888887 78899999999
Q ss_pred c-cchhhcCC----chhHHHHHHHHHHhccCCcEEEEee
Q 043503 345 M-HVLSNWIP----DSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 345 ~-~~L~~~~~----d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
. .+++|+.+ .+....++.++.|+|||||++++..
T Consensus 137 ~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 137 LGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp CTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 8 88876544 2568899999999999999999764
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-12 Score=122.76 Aligned_cols=107 Identities=20% Similarity=0.273 Sum_probs=84.7
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc-----CCeeEEEcccccCCCCCCce
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR-----GLISMHISVSQRLPFFENTL 339 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r-----g~i~~~~~d~~~lpf~d~sf 339 (430)
.+.+...++.+ .+|||+|||+|.++..+++. .+|+++ |+++.+++.++++ ..+.++.+|+..++++ ++|
T Consensus 24 ~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~-~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~f 97 (243)
T 3d2l_A 24 VAWVLEQVEPG--KRIADIGCGTGTATLLLADH-YEVTGV--DLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPV 97 (243)
T ss_dssp HHHHHHHSCTT--CEEEEESCTTCHHHHHHTTT-SEEEEE--ESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCE
T ss_pred HHHHHHHcCCC--CeEEEecCCCCHHHHHHhhC-CeEEEE--ECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCc
Confidence 33444444432 45799999999999999988 888988 6778888887765 2478999999888865 789
Q ss_pred eEEEEcc-chhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 340 DIVHSMH-VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 340 DlV~~~~-~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
|+|++.. +++++.+......++.++.++|+|||.++++
T Consensus 98 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 98 DAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp EEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9999976 7766434456788999999999999999874
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.5e-13 Score=130.42 Aligned_cols=125 Identities=17% Similarity=0.170 Sum_probs=99.5
Q ss_pred CccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEcc
Q 043503 276 TIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMH 346 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~ 346 (430)
...+|||+|||+|.++..++++ +.+++++ |++ .+++.++++ + .+.++.+|+...+++++ ||+|++.+
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~--D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~ 240 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGV--DWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPN 240 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEE--ECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEES
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEE--ecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcc
Confidence 3456799999999999999988 6789988 555 777777654 3 38999999887776654 99999999
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc-----------------------CcHHHHHHHHHHcCCEEEE
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-----------------------QLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-----------------------~~~~~~~~ll~~~Gfk~l~ 403 (430)
++++| ++.....++.++.++|+|||++++.++..... ...++|..+++++||+.++
T Consensus 241 ~l~~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~ 319 (335)
T 2r3s_A 241 FLHHF-DVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQ 319 (335)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEE
T ss_pred hhccC-CHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeee
Confidence 99765 44457899999999999999999887664321 0246788999999999888
Q ss_pred EE
Q 043503 404 WN 405 (430)
Q Consensus 404 ~~ 405 (430)
..
T Consensus 320 ~~ 321 (335)
T 2r3s_A 320 LH 321 (335)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-12 Score=131.21 Aligned_cols=136 Identities=16% Similarity=0.177 Sum_probs=105.5
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-------CCeeEEEcccccCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-------GLISMHISVSQRLPFF 335 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~~~lpf~ 335 (430)
...++...+.....+|||+|||+|.++..++++ +.+++++ |+ +.+++.++++ +.+.+..+|+. .+++
T Consensus 191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~--D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p 266 (369)
T 3gwz_A 191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLL--ER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIP 266 (369)
T ss_dssp HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE--EC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCC
T ss_pred HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEE--cC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCC
Confidence 344555555455577899999999999999988 6788887 56 7888777653 34899999987 4555
Q ss_pred CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc--------------------CcHHHHHHHHH
Q 043503 336 ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS--------------------QLNETYVPMLD 395 (430)
Q Consensus 336 d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~--------------------~~~~~~~~ll~ 395 (430)
. .||+|++.+++++| ++.....+|+++.++|+|||++++.++..... ...++|..+++
T Consensus 267 ~-~~D~v~~~~vlh~~-~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~ 344 (369)
T 3gwz_A 267 D-GADVYLIKHVLHDW-DDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLE 344 (369)
T ss_dssp S-SCSEEEEESCGGGS-CHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHH
T ss_pred C-CceEEEhhhhhccC-CHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHH
Confidence 5 89999999999664 55445689999999999999999987664332 12467899999
Q ss_pred HcCCEEEEEEe
Q 043503 396 RIGFKKLRWNV 406 (430)
Q Consensus 396 ~~Gfk~l~~~~ 406 (430)
++||+.++...
T Consensus 345 ~aGf~~~~~~~ 355 (369)
T 3gwz_A 345 KSGLRVERSLP 355 (369)
T ss_dssp TTTEEEEEEEE
T ss_pred HCCCeEEEEEE
Confidence 99999998754
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-13 Score=120.78 Aligned_cols=130 Identities=14% Similarity=0.104 Sum_probs=89.3
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCC-CCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLP-FFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lp-f~d~sfDlV~~~~~L~~ 350 (430)
.+|||+|||+|.++..+++++.+|+++ |+++.|++.|+++ | .+.++.++.+.++ +.+++||+|+++....+
T Consensus 24 ~~vLDiGcG~G~~~~~la~~~~~v~~v--D~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~ 101 (185)
T 3mti_A 24 SIVVDATMGNGNDTAFLAGLSKKVYAF--DVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLP 101 (185)
T ss_dssp CEEEESCCTTSHHHHHHHTTSSEEEEE--ESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC---
T ss_pred CEEEEEcCCCCHHHHHHHHhCCEEEEE--ECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCCC
Confidence 457999999999999999999999998 6678888887655 3 3788888777754 45789999998632212
Q ss_pred c-----C-CchhHHHHHHHHHHhccCCcEEEEeeccccCcC--cHHH---HHHHHHHcCCEEEEEEeccc
Q 043503 351 W-----I-PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ--LNET---YVPMLDRIGFKKLRWNVGMK 409 (430)
Q Consensus 351 ~-----~-~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~--~~~~---~~~ll~~~Gfk~l~~~~~~k 409 (430)
. . .......++.++.|+|||||.+++..+...... ..+. +...+...+|.+..+.....
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 171 (185)
T 3mti_A 102 SADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQ 171 (185)
T ss_dssp --------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSC
T ss_pred CcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhcc
Confidence 1 0 112456789999999999999999766533221 1223 33334446688888775443
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=126.40 Aligned_cols=123 Identities=12% Similarity=0.108 Sum_probs=95.8
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C-CeeEEEcccccCCCCCCceeEEEEccchhhcC
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G-LISMHISVSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g-~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
.+|||+|||+|.++..++++|.+|+++ |+++.+++.++++ + .+.++.+|+..+++ +++||+|+++.++++ .
T Consensus 122 ~~vLD~GcG~G~~~~~l~~~g~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~-~ 197 (286)
T 3m70_A 122 CKVLDLGCGQGRNSLYLSLLGYDVTSW--DHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMF-L 197 (286)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGG-S
T ss_pred CcEEEECCCCCHHHHHHHHCCCeEEEE--ECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhh-C
Confidence 346999999999999999999999998 6678888776654 4 48899999988886 889999999999955 5
Q ss_pred CchhHHHHHHHHHHhccCCcEEEEeeccccCcC----------cHHHHHHHHHHcCCEEEEEEe
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ----------LNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~----------~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
++.....++.++.++|+|||++++..++..+.. ....+..++.. |+++.+..
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~ 259 (286)
T 3m70_A 198 NRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYNE 259 (286)
T ss_dssp CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEEC
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEEc
Confidence 555688999999999999999887655432211 12456666644 88887753
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=125.47 Aligned_cols=126 Identities=11% Similarity=0.063 Sum_probs=93.9
Q ss_pred ccEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChh------HHHHHHhc----C---CeeEEEcc---cccCCCCCC
Q 043503 277 IRIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGP------FNSFIASR----G---LISMHISV---SQRLPFFEN 337 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~------~le~a~~r----g---~i~~~~~d---~~~lpf~d~ 337 (430)
..+|||||||+|.++..++++ | .+|+++|+ ++. +++.++++ + .+.++.+| ...+|++++
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~--s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 121 (275)
T 3bkx_A 44 GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDI--ASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQ 121 (275)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCTTCEEEEECS--SCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTC
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEEC--CccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCC
Confidence 345799999999999999988 4 79999854 444 67666554 3 38888888 566778889
Q ss_pred ceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc-------------------------------Cc
Q 043503 338 TLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-------------------------------QL 386 (430)
Q Consensus 338 sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-------------------------------~~ 386 (430)
+||+|++..+++| .++ ...++..+.++++|||++++.++..... ..
T Consensus 122 ~fD~v~~~~~l~~-~~~--~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 198 (275)
T 3bkx_A 122 HFDRVVLAHSLWY-FAS--ANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLIT 198 (275)
T ss_dssp CCSEEEEESCGGG-SSC--HHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCCCC
T ss_pred CEEEEEEccchhh-CCC--HHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccccccccCC
Confidence 9999999999965 555 4556777777777799999976543211 02
Q ss_pred HHHHHHHHHHcCCEEEEEEec
Q 043503 387 NETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 387 ~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
.+.+.++++++||+++....-
T Consensus 199 ~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 199 PDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp HHHHHHHHHHHTCEEEECCCB
T ss_pred HHHHHHHHHHCCCeeEEEEEe
Confidence 346888999999999876543
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-13 Score=129.04 Aligned_cols=122 Identities=19% Similarity=0.270 Sum_probs=90.8
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhcC-----CeeEEEcccccC--CCCCCceeEEEE-ccch
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASRG-----LISMHISVSQRL--PFFENTLDIVHS-MHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~rg-----~i~~~~~d~~~l--pf~d~sfDlV~~-~~~L 348 (430)
.+|||||||+|.++..+++.+. +|+++ |+++.|++.|+++. .+.++.+|++.+ ++++++||+|++ .+.+
T Consensus 62 ~~vLDiGcGtG~~~~~l~~~~~~~v~gv--D~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~ 139 (236)
T 1zx0_A 62 GRVLEVGFGMAIAASKVQEAPIDEHWII--ECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 139 (236)
T ss_dssp EEEEEECCTTSHHHHHHHTSCEEEEEEE--ECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEEeccCCHHHHHHHhcCCCeEEEE--cCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCccc
Confidence 4569999999999999988754 78887 77899998887752 278899999888 888999999999 5543
Q ss_pred -hhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC-------cC----cHHHHHHHHHHcCCEE
Q 043503 349 -SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG-------SQ----LNETYVPMLDRIGFKK 401 (430)
Q Consensus 349 -~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~-------~~----~~~~~~~ll~~~Gfk~ 401 (430)
.+.........++.++.|+|||||+|++.++.... .. ..+.....+.++||+.
T Consensus 140 ~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 204 (236)
T 1zx0_A 140 SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR 204 (236)
T ss_dssp BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred chhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence 11122234567899999999999999986544211 00 1134556788999983
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.2e-13 Score=124.40 Aligned_cols=115 Identities=13% Similarity=0.076 Sum_probs=93.1
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcC-CeeEEEccc-ccCCCC-CCceeEEEEccchhhcCCc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRG-LISMHISVS-QRLPFF-ENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg-~i~~~~~d~-~~lpf~-d~sfDlV~~~~~L~~~~~d 354 (430)
.+|||+|||+|.++..+++.+.+|+++ |+++.+++.++++. .+.++++|+ +.+|++ +++||+|+++. +
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~-------~ 120 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQAARWAAY--DFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR-------G 120 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGSSEEEEE--ESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-------C
T ss_pred CeEEEeCCCCCHHHHHHHHcCCEEEEE--ECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-------C
Confidence 456999999999999999999999998 77899999998873 389999998 678888 89999999961 1
Q ss_pred hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEec
Q 043503 355 SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
...++.++.++|||||.++... .....+.+...+.+.||........
T Consensus 121 --~~~~l~~~~~~LkpgG~l~~~~----~~~~~~~~~~~l~~~Gf~~~~~~~~ 167 (226)
T 3m33_A 121 --PTSVILRLPELAAPDAHFLYVG----PRLNVPEVPERLAAVGWDIVAEDHV 167 (226)
T ss_dssp --CSGGGGGHHHHEEEEEEEEEEE----SSSCCTHHHHHHHHTTCEEEEEEEE
T ss_pred --HHHHHHHHHHHcCCCcEEEEeC----CcCCHHHHHHHHHHCCCeEEEEEee
Confidence 3467899999999999998221 1123356888999999998776543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.7e-13 Score=129.67 Aligned_cols=94 Identities=22% Similarity=0.315 Sum_probs=81.6
Q ss_pred ccEEEEEcCCccHHHHHHHH---cCCEEEEEecCCChhHHHHHHhc--------CCeeEEEcccccCCCCC------Cce
Q 043503 277 IRIGLDIGGGTGTFAARMRE---RNVTIITTSLNLDGPFNSFIASR--------GLISMHISVSQRLPFFE------NTL 339 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~---~g~~Vv~vdiD~s~~~le~a~~r--------g~i~~~~~d~~~lpf~d------~sf 339 (430)
..+|||+|||+|.++..+++ .+.+|+++ |+++.+++.++++ ..+.++++|++.+++++ ++|
T Consensus 37 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 37 RKLLVDVGCGPGTATLQMAQELKPFEQIIGS--DLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp CSEEEEETCTTTHHHHHHHHHSSCCSEEEEE--ESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEE--eCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 35679999999999999995 47899988 6778888888764 34899999999998877 899
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
|+|++..++++ . + ...++.++.|+|||||.|++
T Consensus 115 D~V~~~~~l~~-~-~--~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 115 DMITAVECAHW-F-D--FEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp EEEEEESCGGG-S-C--HHHHHHHHHHHEEEEEEEEE
T ss_pred eEEeHhhHHHH-h-C--HHHHHHHHHHhcCCCcEEEE
Confidence 99999999955 5 5 78999999999999999988
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.1e-13 Score=132.56 Aligned_cols=125 Identities=15% Similarity=0.185 Sum_probs=98.6
Q ss_pred CccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccC--CCCCCceeEEEE
Q 043503 276 TIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRL--PFFENTLDIVHS 344 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~l--pf~d~sfDlV~~ 344 (430)
..++|||||||+|.++..++++ +.+++++ |+ +.+++.++++ + .+.++.+|+... |++ ++||+|++
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~--D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~ 254 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIV--DL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWM 254 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEE--EC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEE--eC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEE
Confidence 3456799999999999999986 6788888 55 7888887765 3 489999998775 455 78999999
Q ss_pred ccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC--------------------------cHHHHHHHHHHcC
Q 043503 345 MHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ--------------------------LNETYVPMLDRIG 398 (430)
Q Consensus 345 ~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~--------------------------~~~~~~~ll~~~G 398 (430)
.+++++|. +.....+|+++.++|+|||++++.+++..... ..++|.++++++|
T Consensus 255 ~~vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AG 333 (363)
T 3dp7_A 255 SQFLDCFS-EEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAG 333 (363)
T ss_dssp ESCSTTSC-HHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTT
T ss_pred echhhhCC-HHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcC
Confidence 99997654 44577899999999999999998775533211 2456889999999
Q ss_pred CEEEEEE
Q 043503 399 FKKLRWN 405 (430)
Q Consensus 399 fk~l~~~ 405 (430)
|+.++..
T Consensus 334 f~~v~~~ 340 (363)
T 3dp7_A 334 LEVEEIQ 340 (363)
T ss_dssp EEESCCC
T ss_pred CeEEEEE
Confidence 9987643
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-12 Score=131.10 Aligned_cols=135 Identities=16% Similarity=0.209 Sum_probs=104.6
Q ss_pred HHHHHccCC-CCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeE
Q 043503 265 IDQVLSMKP-LGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDI 341 (430)
Q Consensus 265 id~lL~~~p-~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDl 341 (430)
.+.++...+ .....+|||||||+|.++..++++ +.+++++ |+ +.+++.++++..+.++.+|+.. +++++ |+
T Consensus 191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~--D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~~--D~ 264 (368)
T 3reo_A 191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINF--DL-PHVIQDAPAFSGVEHLGGDMFD-GVPKG--DA 264 (368)
T ss_dssp HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE--EC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SE
T ss_pred HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEE--eh-HHHHHhhhhcCCCEEEecCCCC-CCCCC--CE
Confidence 455665554 344567899999999999999987 6777777 55 7787777766779999999876 66654 99
Q ss_pred EEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc--------------------------CcHHHHHHHHH
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS--------------------------QLNETYVPMLD 395 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~--------------------------~~~~~~~~ll~ 395 (430)
|++.+++++|. +.....+|+++.++|+|||++++.++...+. ...++|.++++
T Consensus 265 v~~~~vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~ 343 (368)
T 3reo_A 265 IFIKWICHDWS-DEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAM 343 (368)
T ss_dssp EEEESCGGGBC-HHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHH
T ss_pred EEEechhhcCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHH
Confidence 99999997764 4457789999999999999999987653221 01356889999
Q ss_pred HcCCEEEEEEe
Q 043503 396 RIGFKKLRWNV 406 (430)
Q Consensus 396 ~~Gfk~l~~~~ 406 (430)
++||+.++...
T Consensus 344 ~AGF~~v~~~~ 354 (368)
T 3reo_A 344 ASGFRGFKVAS 354 (368)
T ss_dssp HTTCCEEEEEE
T ss_pred HCCCeeeEEEE
Confidence 99999887653
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.4e-12 Score=116.28 Aligned_cols=114 Identities=16% Similarity=0.097 Sum_probs=89.9
Q ss_pred CccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccc
Q 043503 276 TIRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHV 347 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~ 347 (430)
...+|||+|||+|.++..+++.+ .+|+++ |+++.+++.++++ + .+.++.+|+........+||+|++...
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~ 117 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLMPNGRIFAL--ERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGS 117 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHCTTSEEEEE--ECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCC
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEE--eCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCC
Confidence 33567999999999999999986 889988 6678888877764 3 488899988554434478999999766
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCE
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFK 400 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk 400 (430)
+. + ...++.++.++|+|||++++..... ...+.+.+.+++.||.
T Consensus 118 ~~----~--~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 118 GG----M--LEEIIDAVDRRLKSEGVIVLNAVTL---DTLTKAVEFLEDHGYM 161 (204)
T ss_dssp TT----C--HHHHHHHHHHHCCTTCEEEEEECBH---HHHHHHHHHHHHTTCE
T ss_pred Cc----C--HHHHHHHHHHhcCCCeEEEEEeccc---ccHHHHHHHHHHCCCc
Confidence 63 2 7789999999999999999975442 2346678889999984
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.1e-12 Score=128.08 Aligned_cols=135 Identities=18% Similarity=0.269 Sum_probs=103.9
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFF 335 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~ 335 (430)
++.++...+.....+|||||||+|.++..++++ +.+++++ |+ +.+++.++++ + .+.++.+|+...+++
T Consensus 179 ~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~--D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 255 (359)
T 1x19_A 179 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTIL--NL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP 255 (359)
T ss_dssp HHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEE--EC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC
T ss_pred HHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEE--ec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC
Confidence 344555444444567899999999999999988 6788888 56 7788777654 3 389999999887766
Q ss_pred CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC------------------c------CcHHHHH
Q 043503 336 ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG------------------S------QLNETYV 391 (430)
Q Consensus 336 d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~------------------~------~~~~~~~ 391 (430)
+. |+|++.+++++| +++....++.++.++|+|||++++.++.... . ...++|.
T Consensus 256 ~~--D~v~~~~vlh~~-~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~ 332 (359)
T 1x19_A 256 EA--DAVLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYK 332 (359)
T ss_dssp CC--SEEEEESCGGGS-CHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHH
T ss_pred CC--CEEEEechhccC-CHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHH
Confidence 54 999999999775 4445789999999999999999887744211 1 2346789
Q ss_pred HHHHHcCCEEEEEE
Q 043503 392 PMLDRIGFKKLRWN 405 (430)
Q Consensus 392 ~ll~~~Gfk~l~~~ 405 (430)
++++++||+.++..
T Consensus 333 ~ll~~aGf~~v~~~ 346 (359)
T 1x19_A 333 EILESLGYKDVTMV 346 (359)
T ss_dssp HHHHHHTCEEEEEE
T ss_pred HHHHHCCCceEEEE
Confidence 99999999988765
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=123.25 Aligned_cols=110 Identities=19% Similarity=0.313 Sum_probs=85.8
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C-CeeEEEcccccCCCCCCce
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G-LISMHISVSQRLPFFENTL 339 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g-~i~~~~~d~~~lpf~d~sf 339 (430)
+..++.........+|||+|||+|.++..+++++.+|+++ |+++.|++.++++ + .+.++++|+..++++ ++|
T Consensus 30 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gv--D~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~f 106 (252)
T 1wzn_A 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGL--DLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEF 106 (252)
T ss_dssp HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCE
T ss_pred HHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEE--ECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCc
Confidence 4444443332333567999999999999999999999998 6778888877654 3 378999999888764 689
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
|+|+|.....++.+......++.++.++|+|||.++++
T Consensus 107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 99999754445455556889999999999999999875
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-12 Score=129.42 Aligned_cols=135 Identities=21% Similarity=0.227 Sum_probs=99.6
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCC
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFE 336 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d 336 (430)
+.++...+.....+|||||||+|.++..++++ +.+++++ |+ +.+++.++++ + .+.++.+|+.. +++.
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~--D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~ 247 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLV--EL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV 247 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEE--EC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC
T ss_pred HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEE--eC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC
Confidence 34444443344467799999999999999988 5788887 66 7888877654 3 48999999754 3444
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeec--cccCc---------------------CcHHHHHHH
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF--FCFGS---------------------QLNETYVPM 393 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f--~~~~~---------------------~~~~~~~~l 393 (430)
.||+|++.+++++| ++.....++.++.++|+|||++++.++ ..... ...++|..+
T Consensus 248 -~~D~v~~~~vl~~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 325 (374)
T 1qzz_A 248 -TADVVLLSFVLLNW-SDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDL 325 (374)
T ss_dssp -CEEEEEEESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHH
T ss_pred -CCCEEEEeccccCC-CHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHH
Confidence 49999999999765 443456899999999999999998876 42211 134578889
Q ss_pred HHHcCCEEEEEEe
Q 043503 394 LDRIGFKKLRWNV 406 (430)
Q Consensus 394 l~~~Gfk~l~~~~ 406 (430)
++++||+.++...
T Consensus 326 l~~aGf~~~~~~~ 338 (374)
T 1qzz_A 326 AGSAGLALASERT 338 (374)
T ss_dssp HHTTTEEEEEEEE
T ss_pred HHHCCCceEEEEE
Confidence 9999999887653
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-12 Score=128.27 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=103.0
Q ss_pred HHHHccCCCCC-ccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCC-C
Q 043503 266 DQVLSMKPLGT-IRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLP-F 334 (430)
Q Consensus 266 d~lL~~~p~~~-ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lp-f 334 (430)
..++...+... ..+|||||||+|.++..++++ +.+++++ |+ +.+++.++++ + .+.++.+|+...+ +
T Consensus 168 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~--D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 244 (352)
T 3mcz_A 168 VDVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIW--DL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNF 244 (352)
T ss_dssp HHHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEE--EC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGG
T ss_pred HHHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEE--EC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCccc
Confidence 35555444333 567899999999999999987 6788887 45 5677666543 3 3899999987765 2
Q ss_pred CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc-----------------------CcHHHHH
Q 043503 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-----------------------QLNETYV 391 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-----------------------~~~~~~~ 391 (430)
.++.||+|++.+++++| ++.....+++++.++|+|||++++.+++..+. ...++|.
T Consensus 245 ~~~~~D~v~~~~vlh~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 323 (352)
T 3mcz_A 245 EGGAADVVMLNDCLHYF-DAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIA 323 (352)
T ss_dssp TTCCEEEEEEESCGGGS-CHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHH
T ss_pred CCCCccEEEEecccccC-CHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHH
Confidence 45679999999999765 55457899999999999999999977653221 1235688
Q ss_pred HHHHHcCCEEEEEEe
Q 043503 392 PMLDRIGFKKLRWNV 406 (430)
Q Consensus 392 ~ll~~~Gfk~l~~~~ 406 (430)
.+++++||+.++...
T Consensus 324 ~ll~~aGf~~~~~~~ 338 (352)
T 3mcz_A 324 GVVRDAGLAVGERSI 338 (352)
T ss_dssp HHHHHTTCEEEEEEE
T ss_pred HHHHHCCCceeeecc
Confidence 999999999988443
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-12 Score=126.82 Aligned_cols=134 Identities=14% Similarity=0.086 Sum_probs=101.9
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-------CCeeEEEcccccCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-------GLISMHISVSQRLPFF 335 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~~~lpf~ 335 (430)
...++...+... .+|||+|||+|.++..++++ +.+++++ |+ +.+++.++++ ..+.++.+|+.. +++
T Consensus 157 ~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~--D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~ 231 (334)
T 2ip2_A 157 FHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVML--DR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP 231 (334)
T ss_dssp HHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEE--EC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC
T ss_pred HHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEe--Cc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC
Confidence 344444444344 67899999999999999987 6788888 55 6666666553 358999999866 555
Q ss_pred CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc---------------------CcHHHHHHHH
Q 043503 336 ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS---------------------QLNETYVPML 394 (430)
Q Consensus 336 d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~---------------------~~~~~~~~ll 394 (430)
++||+|++.+++++|. +.....++.++.++|+|||++++.++...+. ...++|.+++
T Consensus 232 -~~~D~v~~~~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 309 (334)
T 2ip2_A 232 -SNGDIYLLSRIIGDLD-EAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLL 309 (334)
T ss_dssp -SSCSEEEEESCGGGCC-HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHH
T ss_pred -CCCCEEEEchhccCCC-HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHH
Confidence 6799999999997764 4346789999999999999999987653221 1245788999
Q ss_pred HHcCCEEEEEE
Q 043503 395 DRIGFKKLRWN 405 (430)
Q Consensus 395 ~~~Gfk~l~~~ 405 (430)
+++||+.++..
T Consensus 310 ~~aGf~~~~~~ 320 (334)
T 2ip2_A 310 GRGGFAVERIV 320 (334)
T ss_dssp HHTTEEEEEEE
T ss_pred HHCCCceeEEE
Confidence 99999988765
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=119.67 Aligned_cols=115 Identities=12% Similarity=0.100 Sum_probs=93.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
.+|||+|||+|.++..+++.+. +|+++ |+++.+++.++++ +. +.+..+|+... .+++||+|+++..+++
T Consensus 62 ~~vLDiG~G~G~~~~~l~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAHKLGAKSVLAT--DISDESMTAAEENAALNGIYDIALQKTSLLAD--VDGKFDLIVANILAEI 137 (205)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT--CCSCEEEEEEESCHHH
T ss_pred CEEEEECCCCCHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCceEEEecccccc--CCCCceEEEECCcHHH
Confidence 4569999999999999998855 88988 6678888877765 33 78888888664 3689999999876643
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+..++.++.++|+|||++++.++.. ...+.+...+++.||+.+...
T Consensus 138 ------~~~~l~~~~~~L~~gG~l~~~~~~~---~~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 138 ------LLDLIPQLDSHLNEDGQVIFSGIDY---LQLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp ------HHHHGGGSGGGEEEEEEEEEEEEEG---GGHHHHHHHHHHTTEEEEEEE
T ss_pred ------HHHHHHHHHHhcCCCCEEEEEecCc---ccHHHHHHHHHHcCCceEEee
Confidence 5678999999999999999976653 235678889999999988754
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.7e-13 Score=125.36 Aligned_cols=99 Identities=15% Similarity=0.026 Sum_probs=82.3
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcC---CeeEEEcccccCCCCC-----CceeEEEEccchhh
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRG---LISMHISVSQRLPFFE-----NTLDIVHSMHVLSN 350 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg---~i~~~~~d~~~lpf~d-----~sfDlV~~~~~L~~ 350 (430)
+|||+|||+|.++..+++.+.+|+++ |+++.+++.++++. .+.++++|+..+++.. ..||+|++..++++
T Consensus 59 ~vLD~GcG~G~~~~~la~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~ 136 (245)
T 3ggd_A 59 PLIDFACGNGTQTKFLSQFFPRVIGL--DVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHH 136 (245)
T ss_dssp CEEEETCTTSHHHHHHHHHSSCEEEE--ESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTT
T ss_pred eEEEEcCCCCHHHHHHHHhCCCEEEE--ECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchhhc
Confidence 46999999999999999998899988 66789999888762 4889999988765432 34999999888854
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
.++.....++.++.++|||||++++.++.
T Consensus 137 -~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 137 -IPVEKRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp -SCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred -CCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 66555889999999999999999887765
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-12 Score=118.93 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=88.9
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHH
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLE 358 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~ 358 (430)
+|||+|||+|.++..++ .+++++|++.. .+.+..+|+..+++++++||+|++..++ |+ ++ ..
T Consensus 70 ~vLDiG~G~G~~~~~l~---~~v~~~D~s~~-----------~~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~-~~--~~ 131 (215)
T 2zfu_A 70 VVADFGCGDCRLASSIR---NPVHCFDLASL-----------DPRVTVCDMAQVPLEDESVDVAVFCLSL-MG-TN--IR 131 (215)
T ss_dssp CEEEETCTTCHHHHHCC---SCEEEEESSCS-----------STTEEESCTTSCSCCTTCEEEEEEESCC-CS-SC--HH
T ss_pred eEEEECCcCCHHHHHhh---ccEEEEeCCCC-----------CceEEEeccccCCCCCCCEeEEEEehhc-cc-cC--HH
Confidence 45999999999998873 68899866543 3678899999999889999999999988 43 44 78
Q ss_pred HHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEe
Q 043503 359 FTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 359 ~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
.++.++.++|+|||++++.++.... ...+.+..++++.||+++....
T Consensus 132 ~~l~~~~~~L~~gG~l~i~~~~~~~-~~~~~~~~~l~~~Gf~~~~~~~ 178 (215)
T 2zfu_A 132 DFLEEANRVLKPGGLLKVAEVSSRF-EDVRTFLRAVTKLGFKIVSKDL 178 (215)
T ss_dssp HHHHHHHHHEEEEEEEEEEECGGGC-SCHHHHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHHhCCCCeEEEEEEcCCCC-CCHHHHHHHHHHCCCEEEEEec
Confidence 9999999999999999998755321 2457789999999999887543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-12 Score=129.87 Aligned_cols=135 Identities=15% Similarity=0.179 Sum_probs=104.4
Q ss_pred HHHHHccCC-CCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeE
Q 043503 265 IDQVLSMKP-LGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDI 341 (430)
Q Consensus 265 id~lL~~~p-~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDl 341 (430)
+..++...+ .....+|||||||+|.++..++++ +.+++++ |+ +.+++.++++..+.++.+|+.. |++++ |+
T Consensus 189 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~--D~-~~~~~~a~~~~~v~~~~~D~~~-~~p~~--D~ 262 (364)
T 3p9c_A 189 TKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNF--DL-PHVISEAPQFPGVTHVGGDMFK-EVPSG--DT 262 (364)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE--EC-HHHHTTCCCCTTEEEEECCTTT-CCCCC--SE
T ss_pred HHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEe--cC-HHHHHhhhhcCCeEEEeCCcCC-CCCCC--CE
Confidence 344555444 344567899999999999999987 6778777 44 7777777766779999999877 77754 99
Q ss_pred EEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc--------------------------CcHHHHHHHHH
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS--------------------------QLNETYVPMLD 395 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~--------------------------~~~~~~~~ll~ 395 (430)
|++.+++++|. ++....+|+++.++|||||++++.+++..+. ...++|..+++
T Consensus 263 v~~~~vlh~~~-d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~ 341 (364)
T 3p9c_A 263 ILMKWILHDWS-DQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALAR 341 (364)
T ss_dssp EEEESCGGGSC-HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHH
T ss_pred EEehHHhccCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHH
Confidence 99999997764 4457889999999999999999987664321 02356889999
Q ss_pred HcCCEEEEEEe
Q 043503 396 RIGFKKLRWNV 406 (430)
Q Consensus 396 ~~Gfk~l~~~~ 406 (430)
++||+.++...
T Consensus 342 ~AGF~~v~~~~ 352 (364)
T 3p9c_A 342 GAGFTGVKSTY 352 (364)
T ss_dssp HTTCCEEEEEE
T ss_pred HCCCceEEEEE
Confidence 99999888653
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-12 Score=116.10 Aligned_cols=116 Identities=17% Similarity=0.157 Sum_probs=91.0
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCch---
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS--- 355 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~--- 355 (430)
+|||+|||+|.++..+++++ +|+++ |+++.|++. ...+.++++|+.. ++++++||+|+++..+. +.++.
T Consensus 26 ~vLD~GcG~G~~~~~l~~~~-~v~gv--D~s~~~~~~---~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~-~~~~~~~~ 97 (170)
T 3q87_B 26 IVLDLGTSTGVITEQLRKRN-TVVST--DLNIRALES---HRGGNLVRADLLC-SINQESVDVVVFNPPYV-PDTDDPII 97 (170)
T ss_dssp EEEEETCTTCHHHHHHTTTS-EEEEE--ESCHHHHHT---CSSSCEEECSTTT-TBCGGGCSEEEECCCCB-TTCCCTTT
T ss_pred eEEEeccCccHHHHHHHhcC-cEEEE--ECCHHHHhc---ccCCeEEECChhh-hcccCCCCEEEECCCCc-cCCccccc
Confidence 56999999999999999999 99988 667877776 4457899999877 66678999999987763 33221
Q ss_pred ----hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEe
Q 043503 356 ----MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 356 ----~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
....++.++.+.| |||.+++.... ....+.+.+++++.||+......
T Consensus 98 ~~~~~~~~~~~~~~~~l-pgG~l~~~~~~---~~~~~~l~~~l~~~gf~~~~~~~ 148 (170)
T 3q87_B 98 GGGYLGREVIDRFVDAV-TVGMLYLLVIE---ANRPKEVLARLEERGYGTRILKV 148 (170)
T ss_dssp BCCGGGCHHHHHHHHHC-CSSEEEEEEEG---GGCHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCcchHHHHHHHHhhC-CCCEEEEEEec---CCCHHHHHHHHHHCCCcEEEEEe
Confidence 2356889999999 99999986533 23457788999999999876553
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.2e-12 Score=117.63 Aligned_cols=119 Identities=15% Similarity=0.077 Sum_probs=93.0
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
.+|||+|||+|.++..+++++.+|+++ |+++.+++.|+++ | .+.++.+|+........+||+|++...+
T Consensus 57 ~~vLDlGcG~G~~~~~la~~~~~v~~v--D~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~-- 132 (204)
T 3njr_A 57 ELLWDIGGGSGSVSVEWCLAGGRAITI--EPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG-- 132 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC--
T ss_pred CEEEEecCCCCHHHHHHHHcCCEEEEE--eCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc--
Confidence 456999999999999999999999998 6678888877765 2 4889999987733234579999986533
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEeccc
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMK 409 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~~k 409 (430)
+ .. ++.++.++|||||++++.... .+....+.+.+++.||++.++.....
T Consensus 133 ---~--~~-~l~~~~~~LkpgG~lv~~~~~---~~~~~~~~~~l~~~g~~i~~i~~~~~ 182 (204)
T 3njr_A 133 ---S--QA-LYDRLWEWLAPGTRIVANAVT---LESETLLTQLHARHGGQLLRIDIAQA 182 (204)
T ss_dssp ---C--HH-HHHHHHHHSCTTCEEEEEECS---HHHHHHHHHHHHHHCSEEEEEEEEEE
T ss_pred ---c--HH-HHHHHHHhcCCCcEEEEEecC---cccHHHHHHHHHhCCCcEEEEEeecc
Confidence 2 55 999999999999999997543 23345677888999999888765443
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-12 Score=118.87 Aligned_cols=123 Identities=18% Similarity=0.252 Sum_probs=94.3
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCC--CCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLP--FFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lp--f~d~sfDlV~~~~~ 347 (430)
.+|||+|||+|.++..+++. +.+++++ |+++.+++.|+++ | .+.++.+|+..++ +++++||+|+++..
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~p~~~v~gv--D~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQNPDINYIGI--DIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEE--ESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CeEEEEccCcCHHHHHHHHHCCCCCEEEE--EcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 45799999999999999988 5789988 6678888777654 3 4889999998877 77889999999755
Q ss_pred hhhcCCch------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEe
Q 043503 348 LSNWIPDS------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 348 L~~~~~d~------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
. .|.... ....++.++.++|+|||.+++.. ......+...+.+.+.||..+....
T Consensus 121 ~-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~ 181 (214)
T 1yzh_A 121 D-PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT---DNRGLFEYSLVSFSQYGMKLNGVWL 181 (214)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE---SCHHHHHHHHHHHHHHTCEEEEEES
T ss_pred C-CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe---CCHHHHHHHHHHHHHCCCeeeeccc
Confidence 3 332210 13579999999999999999863 2223345667788899999887654
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.5e-12 Score=113.46 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=90.3
Q ss_pred ccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C---CeeEEEccc-ccCCCCCCceeEEEEcc
Q 043503 277 IRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G---LISMHISVS-QRLPFFENTLDIVHSMH 346 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~-~~lpf~d~sfDlV~~~~ 346 (430)
..+|||+|||+|.++..+++. +.+|+++ |+++.+++.++++ + .+ ++.+|. +.++..+++||+|++..
T Consensus 26 ~~~vldiG~G~G~~~~~l~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~ 102 (178)
T 3hm2_A 26 HETLWDIGGGSGSIAIEWLRSTPQTTAVCF--EISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGG 102 (178)
T ss_dssp TEEEEEESTTTTHHHHHHHTTSSSEEEEEE--CSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC
T ss_pred CCeEEEeCCCCCHHHHHHHHHCCCCeEEEE--eCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECC
Confidence 346799999999999999988 6788888 7788888888765 3 35 666776 44443338999999988
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEecc
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGM 408 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~~ 408 (430)
.+++ ..++.++.++|+|||++++..+.. .....+...+++.|+...+.....
T Consensus 103 ~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 154 (178)
T 3hm2_A 103 GLTA-------PGVFAAAWKRLPVGGRLVANAVTV---ESEQMLWALRKQFGGTISSFAISH 154 (178)
T ss_dssp -TTC-------TTHHHHHHHTCCTTCEEEEEECSH---HHHHHHHHHHHHHCCEEEEEEEEE
T ss_pred cccH-------HHHHHHHHHhcCCCCEEEEEeecc---ccHHHHHHHHHHcCCeeEEEEeec
Confidence 8743 357999999999999999976542 234567778889999887766543
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.8e-13 Score=120.49 Aligned_cols=115 Identities=13% Similarity=0.153 Sum_probs=90.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCCCceeEEEEccchhhcC
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
.+|||+|||+|.++..+++.+. +|+++ |+++.+++.++++ ..+.+.++|+..+++++++||+|++..++++..
T Consensus 44 ~~vLdiGcG~G~~~~~l~~~~~~~v~~~--D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~ 121 (215)
T 2pxx_A 44 DRILVLGCGNSALSYELFLGGFPNVTSV--DYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALL 121 (215)
T ss_dssp CCEEEETCTTCSHHHHHHHTTCCCEEEE--ESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHT
T ss_pred CeEEEECCCCcHHHHHHHHcCCCcEEEE--eCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhhhc
Confidence 3469999999999999999976 88888 6778889888876 348899999998888889999999988885533
Q ss_pred C------------chhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCC
Q 043503 353 P------------DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGF 399 (430)
Q Consensus 353 ~------------d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gf 399 (430)
. ......++.++.|+|+|||.+++..+.. ......++...||
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~-----~~~~~~~~~~~~~ 175 (215)
T 2pxx_A 122 AGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA-----PHFRTRHYAQAYY 175 (215)
T ss_dssp TTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC-----HHHHHHHHCCGGG
T ss_pred cccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC-----cHHHHHHHhcccc
Confidence 0 1246889999999999999999976542 1223445555665
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=125.73 Aligned_cols=111 Identities=9% Similarity=0.033 Sum_probs=82.4
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCC-----CCCce
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPF-----FENTL 339 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf-----~d~sf 339 (430)
++.++...+.....+|||+|||+|.++..+++++.+|+++ |+++.|++.++++-.-.++..++..++. .+++|
T Consensus 34 ~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gv--D~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~f 111 (261)
T 3iv6_A 34 RENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVF--DFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHF 111 (261)
T ss_dssp HHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCC
T ss_pred HHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEE--ECCHHHHHHHHHHHHhccceeeeeecccccccccCCCc
Confidence 3444444443344567999999999999999999999998 7789999999877331133344433332 25789
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
|+|+++.+++|+. ......++.++.++| |||.++++..
T Consensus 112 D~Vv~~~~l~~~~-~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 112 DFVLNDRLINRFT-TEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp SEEEEESCGGGSC-HHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cEEEEhhhhHhCC-HHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 9999999996654 335788999999999 9999998743
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-12 Score=129.62 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=76.0
Q ss_pred cEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----CC--------eeEEEccc------ccC--CCCC
Q 043503 278 RIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----GL--------ISMHISVS------QRL--PFFE 336 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g~--------i~~~~~d~------~~l--pf~d 336 (430)
.+|||||||+|..+..++.. +.+|+|+ |+|+.|++.|+++ +. +.+.+.+. +.+ ++++
T Consensus 50 ~~VLDlGCG~G~~l~~~~~~~~~~v~Gi--D~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYFYGEIALLVAT--DPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp CEEEETTCTTTTTHHHHHHTTCSEEEEE--ESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CeEEEEecCCcHhHHHHHhcCCCeEEEE--ECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 46799999999876666665 5789988 7789999988765 31 45667766 333 3567
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
++||+|.|..++++.........++.++.|+|||||+|+++..
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 8999999999884422322468999999999999999987653
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-12 Score=118.96 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=92.4
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCC--CCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLP--FFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lp--f~d~sfDlV~~~~~ 347 (430)
.+|||||||+|.++..++++ +.+++++ |+++.+++.|+++ | .+.++.+|+..++ +++++||.|++...
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p~~~v~gi--D~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNPDINYIGI--ELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEE--CSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred ceEEEEecCCCHHHHHHHHHCCCCCEEEE--EechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 45799999999999999987 6889988 7788888877654 4 3889999988876 77889999988543
Q ss_pred hhhcCCch------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEe
Q 043503 348 LSNWIPDS------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 348 L~~~~~d~------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
. .|.... ....++.++.++|+|||.|++.. ......+.....+.+.||.......
T Consensus 118 ~-p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t---d~~~~~~~~~~~~~~~g~~~~~~~~ 178 (213)
T 2fca_A 118 D-PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT---DNRGLFEYSLKSFSEYGLLLTYVSL 178 (213)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE---SCHHHHHHHHHHHHHHTCEEEEEES
T ss_pred C-CCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe---CCHHHHHHHHHHHHHCCCccccccc
Confidence 3 222110 13578999999999999999864 1222345566778888998776543
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-13 Score=128.09 Aligned_cols=121 Identities=17% Similarity=0.225 Sum_probs=87.2
Q ss_pred cEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccC--CCCCCceeEEEEc----
Q 043503 278 RIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRL--PFFENTLDIVHSM---- 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~l--pf~d~sfDlV~~~---- 345 (430)
.+|||||||+|..+..+++. +.+|+++ |+++.+++.|+++ +. +.++.++++.+ ++++++||.|+.-
T Consensus 62 ~rVLdiG~G~G~~~~~~~~~~~~~v~~i--d~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~ 139 (236)
T 3orh_A 62 GRVLEVGFGMAIAASKVQEAPIDEHWII--ECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 139 (236)
T ss_dssp EEEEEECCTTSHHHHHHTTSCEEEEEEE--ECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEECCCccHHHHHHHHhCCcEEEEE--eCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeeec
Confidence 45699999999999999987 4577777 7779999988865 22 67788887654 4778999999862
Q ss_pred -cchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc-------C----cHHHHHHHHHHcCCEEEE
Q 043503 346 -HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-------Q----LNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 346 -~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-------~----~~~~~~~ll~~~Gfk~l~ 403 (430)
..+.| .+ ....++.++.|+|||||+|.+.+....+. . ..+.+...+.++||+...
T Consensus 140 ~~~~~~-~~--~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~~~ 206 (236)
T 3orh_A 140 SEETWH-TH--QFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRREN 206 (236)
T ss_dssp BGGGTT-TH--HHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCGGG
T ss_pred ccchhh-hc--chhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeEEE
Confidence 22222 22 37889999999999999998865332111 0 223456678889998543
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-12 Score=130.06 Aligned_cols=134 Identities=18% Similarity=0.169 Sum_probs=100.5
Q ss_pred HHHHccCC-CCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEE
Q 043503 266 DQVLSMKP-LGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIV 342 (430)
Q Consensus 266 d~lL~~~p-~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV 342 (430)
+.++...+ .....+|||||||+|.++..++++ +.+++++ |+ +.+++.+++...+.++.+|+.. ++++ ||+|
T Consensus 198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~--D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~--~D~v 271 (372)
T 1fp1_D 198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINF--DL-PQVIENAPPLSGIEHVGGDMFA-SVPQ--GDAM 271 (372)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE--EC-HHHHTTCCCCTTEEEEECCTTT-CCCC--EEEE
T ss_pred HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEe--Ch-HHHHHhhhhcCCCEEEeCCccc-CCCC--CCEE
Confidence 44444443 234467899999999999999988 4666666 55 7787777665558999999876 6654 9999
Q ss_pred EEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC-------------------------cHHHHHHHHHHc
Q 043503 343 HSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-------------------------LNETYVPMLDRI 397 (430)
Q Consensus 343 ~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-------------------------~~~~~~~ll~~~ 397 (430)
++.+++++| ++.....+|+++.++|+|||++++.++...... ..++|..+++++
T Consensus 272 ~~~~~lh~~-~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~a 350 (372)
T 1fp1_D 272 ILKAVCHNW-SDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLS 350 (372)
T ss_dssp EEESSGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHT
T ss_pred EEecccccC-CHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHC
Confidence 999999765 553456899999999999999998865532210 235688899999
Q ss_pred CCEEEEEEe
Q 043503 398 GFKKLRWNV 406 (430)
Q Consensus 398 Gfk~l~~~~ 406 (430)
||+.++...
T Consensus 351 Gf~~~~~~~ 359 (372)
T 1fp1_D 351 GFSKFQVAC 359 (372)
T ss_dssp TCSEEEEEE
T ss_pred CCceEEEEE
Confidence 999887653
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.3e-12 Score=122.40 Aligned_cols=116 Identities=15% Similarity=0.113 Sum_probs=91.7
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCCCceeEEEEccchhhcC
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
.+|||+|||+|.++..+++.+.+|+++ |+++.+++.++++ +. +.+..+|.... +++++||+|+++...++
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~~v~gv--Di~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~~~-- 196 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGGKALGV--DIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYAEL-- 196 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEE--ESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCHHH--
T ss_pred CEEEEecCCCcHHHHHHHHhCCeEEEE--ECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECCcHHH--
Confidence 456999999999999999998899998 5567777766654 44 78888887552 44678999999654422
Q ss_pred CchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+..++.++.++|+|||+++++.+.. ...+.+...+++.||+.+...
T Consensus 197 ----~~~~l~~~~~~LkpgG~lils~~~~---~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 197 ----HAALAPRYREALVPGGRALLTGILK---DRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ----HHHHHHHHHHHEEEEEEEEEEEEEG---GGHHHHHHHHHHTTCEEEEEE
T ss_pred ----HHHHHHHHHHHcCCCCEEEEEeecc---CCHHHHHHHHHHCCCEEEEEe
Confidence 5689999999999999999987663 235778889999999988754
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.1e-12 Score=125.59 Aligned_cols=134 Identities=13% Similarity=0.076 Sum_probs=97.3
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHh-----cCCeeEEEcccccCCCCCCc
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIAS-----RGLISMHISVSQRLPFFENT 338 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~-----rg~i~~~~~d~~~lpf~d~s 338 (430)
+.++...+.....+|||||||+|.++..++++ +.+++++ |+ +.+...+.. .+.+.++.+|+. .+++ +
T Consensus 174 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~--D~-~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~ 247 (348)
T 3lst_A 174 LILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLL--DR-AEVVARHRLDAPDVAGRWKVVEGDFL-REVP--H 247 (348)
T ss_dssp HHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEE--EC-HHHHTTCCCCCGGGTTSEEEEECCTT-TCCC--C
T ss_pred HHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEe--cC-HHHhhcccccccCCCCCeEEEecCCC-CCCC--C
Confidence 34454445445567899999999999999987 4566666 54 334331110 134889999985 3444 8
Q ss_pred eeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc---------------------CcHHHHHHHHHHc
Q 043503 339 LDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS---------------------QLNETYVPMLDRI 397 (430)
Q Consensus 339 fDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~---------------------~~~~~~~~ll~~~ 397 (430)
||+|++.+++++| ++.....+|+++.++|||||++++.++...+. ...++|.++++++
T Consensus 248 ~D~v~~~~vlh~~-~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~a 326 (348)
T 3lst_A 248 ADVHVLKRILHNW-GDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAA 326 (348)
T ss_dssp CSEEEEESCGGGS-CHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHT
T ss_pred CcEEEEehhccCC-CHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHC
Confidence 9999999999765 45445799999999999999999987654321 1245789999999
Q ss_pred CCEEEEEEe
Q 043503 398 GFKKLRWNV 406 (430)
Q Consensus 398 Gfk~l~~~~ 406 (430)
||+.++...
T Consensus 327 Gf~~~~~~~ 335 (348)
T 3lst_A 327 GLRLDRVVG 335 (348)
T ss_dssp TEEEEEEEE
T ss_pred CCceEEEEE
Confidence 999988664
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-11 Score=124.28 Aligned_cols=135 Identities=20% Similarity=0.276 Sum_probs=104.7
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc------CCeeEEEcccccCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR------GLISMHISVSQRLPFFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r------g~i~~~~~d~~~lpf~d 336 (430)
...++...+....++|||||||+|.++..++++ +.+++.. |. +.+++.++++ +.+.++.+|+...|.+
T Consensus 168 ~~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~--dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~- 243 (353)
T 4a6d_A 168 GRSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVF--DI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP- 243 (353)
T ss_dssp HHHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEE--EC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC-
T ss_pred HHHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEec--cC-HHHHHHHHHhhhhcccCceeeecCccccCCCC-
Confidence 445565556566678899999999999999998 5666655 44 6778777654 3489999998765544
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC----------------------cHHHHHHHH
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ----------------------LNETYVPML 394 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~----------------------~~~~~~~ll 394 (430)
.+|+|++.+++++|. ++....+|++++++|+|||.+++.+++..+.. ..++|..++
T Consensus 244 -~~D~~~~~~vlh~~~-d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll 321 (353)
T 4a6d_A 244 -EADLYILARVLHDWA-DGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLL 321 (353)
T ss_dssp -CCSEEEEESSGGGSC-HHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHH
T ss_pred -CceEEEeeeecccCC-HHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHH
Confidence 479999999998765 44578899999999999999999887643221 135689999
Q ss_pred HHcCCEEEEEE
Q 043503 395 DRIGFKKLRWN 405 (430)
Q Consensus 395 ~~~Gfk~l~~~ 405 (430)
+++||+.++..
T Consensus 322 ~~AGf~~v~v~ 332 (353)
T 4a6d_A 322 SSAGFRDFQFK 332 (353)
T ss_dssp HHHTCEEEEEE
T ss_pred HHCCCceEEEE
Confidence 99999998865
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-12 Score=113.65 Aligned_cols=125 Identities=10% Similarity=0.078 Sum_probs=91.2
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C----CeeEEEcccccCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G----LISMHISVSQRLPFFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g----~i~~~~~d~~~lpf~d 336 (430)
.+.++..+......+|||+|||+|.++..+++.+.+++++ |+++.+++.++++ + .+.++.+|+.. ++++
T Consensus 41 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~--D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~ 117 (194)
T 1dus_A 41 TKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMA--DINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKD 117 (194)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEE--ESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTT
T ss_pred HHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEE--ECCHHHHHHHHHHHHHcCCCccceEEEECchhc-cccc
Confidence 3444444443344567999999999999999988899998 6678888777654 3 27888888766 3457
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHc
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRI 397 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~ 397 (430)
++||+|+++..+++ . ......++.++.++|+|||.+++..... ...+.+.+.+++.
T Consensus 118 ~~~D~v~~~~~~~~-~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~---~~~~~~~~~l~~~ 173 (194)
T 1dus_A 118 RKYNKIITNPPIRA-G-KEVLHRIIEEGKELLKDNGEIWVVIQTK---QGAKSLAKYMKDV 173 (194)
T ss_dssp SCEEEEEECCCSTT-C-HHHHHHHHHHHHHHEEEEEEEEEEEEST---HHHHHHHHHHHHH
T ss_pred CCceEEEECCCccc-c-hhHHHHHHHHHHHHcCCCCEEEEEECCC---CChHHHHHHHHHH
Confidence 79999999877632 2 2247789999999999999999976542 2234455566665
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.36 E-value=7e-12 Score=116.74 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=92.8
Q ss_pred cEEEEEcCC-ccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----C-CeeEEEcccccC-CCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGG-TGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----G-LISMHISVSQRL-PFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcG-tG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g-~i~~~~~d~~~l-pf~d~sfDlV~~~~~L~ 349 (430)
.+|||+||| +|.++..+++. +.+|+++ |+++.+++.++++ + .+.++.+|+..+ ++++++||+|+++..+.
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~ 134 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKFFNCKVTAT--EVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYY 134 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHHHCCEEEEE--ECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEE--ECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCc
Confidence 457999999 99999999998 8999998 6678888777654 4 378899986543 45678999999975552
Q ss_pred hcCC----------------chhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEe
Q 043503 350 NWIP----------------DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 350 ~~~~----------------d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
+... ......++.++.++|||||++++... ......+.+.+.+++.||.+.....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~~l~~~g~~~~~~~~ 205 (230)
T 3evz_A 135 DKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLP--DKEKLLNVIKERGIKLGYSVKDIKF 205 (230)
T ss_dssp ---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEE--SCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEec--ccHhHHHHHHHHHHHcCCceEEEEe
Confidence 2111 11247899999999999999998532 2223346788899999998776544
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.2e-12 Score=126.07 Aligned_cols=133 Identities=22% Similarity=0.246 Sum_probs=98.0
Q ss_pred HHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCc
Q 043503 268 VLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENT 338 (430)
Q Consensus 268 lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~s 338 (430)
++...+.....+|||||||+|.++..++++ +.+++++ |+ +.+++.++++ + .+.++.+|+.. +++. .
T Consensus 175 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~--D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~ 249 (360)
T 1tw3_A 175 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVL--EM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-K 249 (360)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE--EC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-C
T ss_pred HHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEe--cC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-C
Confidence 333333334456799999999999999988 4677766 55 6677766653 3 48999998754 3444 4
Q ss_pred eeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc-ccCc---------------------CcHHHHHHHHHH
Q 043503 339 LDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF-CFGS---------------------QLNETYVPMLDR 396 (430)
Q Consensus 339 fDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~-~~~~---------------------~~~~~~~~ll~~ 396 (430)
||+|++.+++++| ++.....++.++.++|+|||++++.++. ..+. ...++|..++++
T Consensus 250 ~D~v~~~~vl~~~-~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 328 (360)
T 1tw3_A 250 ADAIILSFVLLNW-PDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAAS 328 (360)
T ss_dssp EEEEEEESCGGGS-CHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHH
T ss_pred ccEEEEcccccCC-CHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHH
Confidence 9999999999765 4434578999999999999999988766 2111 123568899999
Q ss_pred cCCEEEEEEe
Q 043503 397 IGFKKLRWNV 406 (430)
Q Consensus 397 ~Gfk~l~~~~ 406 (430)
+||+.++...
T Consensus 329 aGf~~~~~~~ 338 (360)
T 1tw3_A 329 AGLVVEEVRQ 338 (360)
T ss_dssp TTEEEEEEEE
T ss_pred CCCeEEEEEe
Confidence 9999887653
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6.5e-12 Score=112.23 Aligned_cols=113 Identities=17% Similarity=0.198 Sum_probs=87.9
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc-------CCeeEEEcccccCCCCC-CceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR-------GLISMHISVSQRLPFFE-NTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~~~lpf~d-~sfDlV~~~~~L~ 349 (430)
.+|||+|||+|.++..+++.+.+|+++ |+++.+++.++++ ..+.+..+|... ++++ ++||+|++..++.
T Consensus 35 ~~vldiG~G~G~~~~~l~~~~~~v~~~--D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~ 111 (192)
T 1l3i_A 35 DVAVDVGCGTGGVTLELAGRVRRVYAI--DRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGGSGG 111 (192)
T ss_dssp CEEEEESCTTSHHHHHHHTTSSEEEEE--ESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESCCTT
T ss_pred CEEEEECCCCCHHHHHHHHhcCEEEEE--ECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEECCchH
Confidence 456999999999999999988889988 6678888777654 247888888765 3333 5899999976653
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
+ ...++.++.++|+|||.+++..+. ......+...+++.||.+.
T Consensus 112 ~------~~~~l~~~~~~l~~gG~l~~~~~~---~~~~~~~~~~l~~~g~~~~ 155 (192)
T 1l3i_A 112 E------LQEILRIIKDKLKPGGRIIVTAIL---LETKFEAMECLRDLGFDVN 155 (192)
T ss_dssp C------HHHHHHHHHHTEEEEEEEEEEECB---HHHHHHHHHHHHHTTCCCE
T ss_pred H------HHHHHHHHHHhcCCCcEEEEEecC---cchHHHHHHHHHHCCCceE
Confidence 2 678999999999999999987543 2234567788999999543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.6e-12 Score=122.45 Aligned_cols=103 Identities=10% Similarity=0.108 Sum_probs=82.5
Q ss_pred CccEEEEEcCCc---cHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCC-----------CC
Q 043503 276 TIRIGLDIGGGT---GTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLP-----------FF 335 (430)
Q Consensus 276 ~ir~VLDIGcGt---G~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lp-----------f~ 335 (430)
.++.|||||||+ |.++..+.+. +.+|+++ |+++.|++.++++ +.+.++.+|+...+ ++
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~v--D~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYV--DIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEE--ESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEE--ECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCC
Confidence 456789999999 9888777664 6899988 6678999888765 45899999986421 22
Q ss_pred CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 336 ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 336 d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
..+||+|++..+++ |++++....+|.++.++|+|||+|+++++..
T Consensus 155 ~~~~d~v~~~~vlh-~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 155 FSRPAAIMLVGMLH-YLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp TTSCCEEEETTTGG-GSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCCCEEEEEechhh-hCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 35899999999995 4655468899999999999999999998764
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.8e-12 Score=117.09 Aligned_cols=126 Identities=17% Similarity=0.221 Sum_probs=90.7
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHH----Hh----cC--CeeEEEcccccCCCCCCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFI----AS----RG--LISMHISVSQRLPFFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a----~~----rg--~i~~~~~d~~~lpf~d~sfDlV~~~ 345 (430)
.+|||+|||+|.++..++++ +.+|+++ |+++.|++.+ ++ ++ .+.++++|+..+|+++++ |.|+..
T Consensus 29 ~~vLDiGcG~G~~~~~la~~~p~~~v~gv--D~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~ 105 (218)
T 3mq2_A 29 DVVLDVGTGDGKHPYKVARQNPSRLVVAL--DADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVL 105 (218)
T ss_dssp EEEEEESCTTCHHHHHHHHHCTTEEEEEE--ESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEE
T ss_pred CEEEEecCCCCHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEE
Confidence 45699999999999999998 6889988 6678877642 21 23 388999999999988777 777743
Q ss_pred cchh----hcCCchhHHHHHHHHHHhccCCcEEEEeecccc----C------cC-----cHHHHHHHHHHcCCEEEEEEe
Q 043503 346 HVLS----NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF----G------SQ-----LNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 346 ~~L~----~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~----~------~~-----~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
.... ++.++ ...++.++.|+|||||.++++..... . .. ..+.+..++.++||++.....
T Consensus 106 ~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~~~ 183 (218)
T 3mq2_A 106 MPWGSLLRGVLGS--SPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCRY 183 (218)
T ss_dssp SCCHHHHHHHHTS--SSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ccchhhhhhhhcc--HHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceeeec
Confidence 2211 23444 36899999999999999998532110 0 00 123477899999999988664
Q ss_pred cc
Q 043503 407 GM 408 (430)
Q Consensus 407 ~~ 408 (430)
..
T Consensus 184 ~~ 185 (218)
T 3mq2_A 184 LE 185 (218)
T ss_dssp EC
T ss_pred cc
Confidence 43
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-11 Score=114.39 Aligned_cols=128 Identities=13% Similarity=0.140 Sum_probs=90.8
Q ss_pred HccCCCCCccEEEEEcCCccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhc----CCeeEEEccccc----CCCCCCc
Q 043503 269 LSMKPLGTIRIGLDIGGGTGTFAARMRER-N-VTIITTSLNLDGPFNSFIASR----GLISMHISVSQR----LPFFENT 338 (430)
Q Consensus 269 L~~~p~~~ir~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~----lpf~d~s 338 (430)
+...+.....+|||+|||+|.++..+++. + .+|+++ |+++.+++.++++ ..+.++.+|+.. +++. ++
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~ 143 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAI--EYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EK 143 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEE--ESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CC
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEE--ECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-cc
Confidence 44333333456799999999999999988 4 789988 6778888777654 348888999877 6666 78
Q ss_pred eeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc-ccCcC------cHHHHHHHHHHcCCEEEEEE
Q 043503 339 LDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF-CFGSQ------LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 339 fDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~-~~~~~------~~~~~~~ll~~~Gfk~l~~~ 405 (430)
||+|++ +....+....++.++.++|||||++++.... +.... ..+++. ++.+.||+.++..
T Consensus 144 ~D~v~~-----~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~ 211 (230)
T 1fbn_A 144 VDVIYE-----DVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEV 211 (230)
T ss_dssp EEEEEE-----CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEE
T ss_pred EEEEEE-----ecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEE
Confidence 999994 2112223467899999999999999996111 11111 124555 8889999988755
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-11 Score=108.86 Aligned_cols=113 Identities=7% Similarity=0.020 Sum_probs=89.9
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+|||+|||+|.++..+++.+.+++++ |+++.+++.++++ + .+.++.+|+.. ++++++||+|++..+
T Consensus 37 ~~vLdiG~G~G~~~~~l~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~---- 109 (183)
T 2yxd_A 37 DVVVDVGCGSGGMTVEIAKRCKFVYAI--DYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT---- 109 (183)
T ss_dssp CEEEEESCCCSHHHHHHHTTSSEEEEE--ECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC----
T ss_pred CEEEEeCCCCCHHHHHHHhcCCeEEEE--eCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc----
Confidence 456999999999999999988899998 6678888877765 3 48889998876 666789999999766
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
. ....++.++.++ |||.+++.... ......+.+.+++.||.+....
T Consensus 110 -~--~~~~~l~~~~~~--~gG~l~~~~~~---~~~~~~~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 110 -K--NIEKIIEILDKK--KINHIVANTIV---LENAAKIINEFESRGYNVDAVN 155 (183)
T ss_dssp -S--CHHHHHHHHHHT--TCCEEEEEESC---HHHHHHHHHHHHHTTCEEEEEE
T ss_pred -c--cHHHHHHHHhhC--CCCEEEEEecc---cccHHHHHHHHHHcCCeEEEEE
Confidence 2 277899999999 99999997633 2234567888999998766543
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=8.9e-12 Score=124.48 Aligned_cols=123 Identities=17% Similarity=0.158 Sum_probs=96.6
Q ss_pred ccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCc
Q 043503 277 IRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d 354 (430)
..+|||||||+|.++..++++ +.+++++ |+ +.+++.+++...+.++.+|+.. ++++ ||+|++.+++++| ++
T Consensus 189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~--D~-~~~~~~a~~~~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~-~d 261 (352)
T 1fp2_A 189 LESIVDVGGGTGTTAKIICETFPKLKCIVF--DR-PQVVENLSGSNNLTYVGGDMFT-SIPN--ADAVLLKYILHNW-TD 261 (352)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEE--EC-HHHHTTCCCBTTEEEEECCTTT-CCCC--CSEEEEESCGGGS-CH
T ss_pred CceEEEeCCCccHHHHHHHHHCCCCeEEEe--eC-HHHHhhcccCCCcEEEeccccC-CCCC--ccEEEeehhhccC-CH
Confidence 356799999999999999987 6788888 55 7888777665558999999855 5553 9999999999775 44
Q ss_pred hhHHHHHHHHHHhccC---CcEEEEeeccccCcC------------------------cHHHHHHHHHHcCCEEEEEEe
Q 043503 355 SMLEFTLYDIYRLLRP---GGIFWLDRFFCFGSQ------------------------LNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrP---GG~lvl~~f~~~~~~------------------------~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
.....+|+++.++||| ||++++.++...... ..++|.++++++||+.++...
T Consensus 262 ~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 340 (352)
T 1fp2_A 262 KDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISP 340 (352)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEEEe
Confidence 3456899999999999 999998876543211 135788999999999887653
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.31 E-value=8e-12 Score=118.00 Aligned_cols=118 Identities=13% Similarity=0.101 Sum_probs=89.8
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCC---CCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFF---ENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~---d~sfDlV~~~~ 346 (430)
.+|||+|||+|.++..++.. +.+|+++ |+++.+++.++++ |. +.++++|++.+++. +++||+|++..
T Consensus 72 ~~vLDiG~G~G~~~~~la~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 149 (240)
T 1xdz_A 72 NTICDVGAGAGFPSLPIKICFPHLHVTIV--DSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (240)
T ss_dssp CEEEEECSSSCTTHHHHHHHCTTCEEEEE--ESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence 46799999999999999853 7889988 6778888777653 43 88999999888764 67999999954
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+ .+ ...++.++.++|+|||+|++..-.. .......+.+.+++.||+..+..
T Consensus 150 ~-----~~--~~~~l~~~~~~LkpgG~l~~~~g~~-~~~~~~~~~~~l~~~g~~~~~~~ 200 (240)
T 1xdz_A 150 V-----AR--LSVLSELCLPLVKKNGLFVALKAAS-AEEELNAGKKAITTLGGELENIH 200 (240)
T ss_dssp C-----SC--HHHHHHHHGGGEEEEEEEEEEECC--CHHHHHHHHHHHHHTTEEEEEEE
T ss_pred c-----CC--HHHHHHHHHHhcCCCCEEEEEeCCC-chHHHHHHHHHHHHcCCeEeEEE
Confidence 2 33 7889999999999999998853111 11123456678889999877654
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.30 E-value=3e-11 Score=115.21 Aligned_cols=124 Identities=14% Similarity=0.041 Sum_probs=89.1
Q ss_pred CCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CCeeEEEcccc---cCCCCCCceeEEEE
Q 043503 275 GTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GLISMHISVSQ---RLPFFENTLDIVHS 344 (430)
Q Consensus 275 ~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~---~lpf~d~sfDlV~~ 344 (430)
+...+|||+|||+|.++..+++. ..+|+++ |+++.|++.+.++ +.+..+.++.. ..++..+++|+|++
T Consensus 76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~av--D~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~ 153 (233)
T 4df3_A 76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGV--EFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYA 153 (233)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEE--ECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEE--eCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEE
Confidence 33345699999999999999987 4688888 7788988777644 55777777654 34566789999998
Q ss_pred ccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc------cCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 345 MHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC------FGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 345 ~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~------~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.... ++ ....++.++.|+|||||.++++.... ..........+.+++.||+.++..
T Consensus 154 d~~~----~~-~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i 215 (233)
T 4df3_A 154 DVAQ----PE-QAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVV 215 (233)
T ss_dssp CCCC----TT-HHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred eccC----Ch-hHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEE
Confidence 4222 22 36789999999999999999863221 111123445567888999988754
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.4e-11 Score=112.26 Aligned_cols=121 Identities=12% Similarity=0.083 Sum_probs=82.4
Q ss_pred cEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhH----HHHHHhcCCeeEEEcccccC----CCCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPF----NSFIASRGLISMHISVSQRL----PFFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~----le~a~~rg~i~~~~~d~~~l----pf~d~sfDlV~~~~~ 347 (430)
.+|||+|||+|.++..+++.. .+|+++ |+++.| .+.++++..+.++.+|+... ++. ++||+|++. +
T Consensus 59 ~~VLDlGcGtG~~~~~la~~~~~~~V~gv--D~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~-~ 134 (210)
T 1nt2_A 59 ERVLYLGAASGTTVSHLADIVDEGIIYAV--EYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQD-I 134 (210)
T ss_dssp CEEEEETCTTSHHHHHHHHHTTTSEEEEE--CCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEEC-C
T ss_pred CEEEEECCcCCHHHHHHHHHcCCCEEEEE--ECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEEe-c
Confidence 467999999999999998873 689988 677764 45555555677888887663 444 789999996 2
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeecc-ccC-cCcHHHH----HHHHHHcCCEEEEEEec
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF-CFG-SQLNETY----VPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~-~~~-~~~~~~~----~~ll~~~Gfk~l~~~~~ 407 (430)
. .++ ....++.++.|+|||||+|++.... +.+ ....+++ .+.+++. |++++....
T Consensus 135 ~---~~~-~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~ 195 (210)
T 1nt2_A 135 A---QKN-QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHGSL 195 (210)
T ss_dssp C---STT-HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred c---Chh-HHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeeeecC
Confidence 2 122 2456699999999999999987311 111 1111222 1236777 998876533
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=112.43 Aligned_cols=130 Identities=14% Similarity=0.087 Sum_probs=92.7
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCC-CCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLP-FFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lp-f~d~sfDlV~~~~ 346 (430)
.+|||+|||+|.++..++++ +.+|+++ |+++.+++.++++ | .+.++.+|+..++ +.+++||+|++..
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 101 (197)
T 3eey_A 24 DTVVDATCGNGNDTAFLASLVGENGRVFGF--DIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNL 101 (197)
T ss_dssp CEEEESCCTTSHHHHHHHHHHCTTCEEEEE--CSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEE
T ss_pred CEEEEcCCCCCHHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcC
Confidence 35699999999999999987 2588888 7778888877665 3 3889999988876 6678999999975
Q ss_pred chhh-----cC-CchhHHHHHHHHHHhccCCcEEEEeeccccCcC--cHHHHHHHH---HHcCCEEEEEEeccc
Q 043503 347 VLSN-----WI-PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ--LNETYVPML---DRIGFKKLRWNVGMK 409 (430)
Q Consensus 347 ~L~~-----~~-~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~--~~~~~~~ll---~~~Gfk~l~~~~~~k 409 (430)
.+.. .. .......++.++.++|||||++++..+...... ....+...+ ...+|.+.++..-..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~ 175 (197)
T 3eey_A 102 GYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQ 175 (197)
T ss_dssp SBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTC
T ss_pred CcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccC
Confidence 4411 01 111356799999999999999999865533221 122333333 446788888775544
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=120.59 Aligned_cols=97 Identities=13% Similarity=0.188 Sum_probs=77.9
Q ss_pred cEEEEEcCCccH----HHHHHHHc------CCEEEEEecCCChhHHHHHHhc----------------------------
Q 043503 278 RIGLDIGGGTGT----FAARMRER------NVTIITTSLNLDGPFNSFIASR---------------------------- 319 (430)
Q Consensus 278 r~VLDIGcGtG~----~a~~La~~------g~~Vv~vdiD~s~~~le~a~~r---------------------------- 319 (430)
.+|||+|||||. ++..+++. +.+|+++ |+++.|++.|+++
T Consensus 107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~at--Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 107 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFAS--DIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEE--ESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred cEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEE--ECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 356999999997 66667665 3588888 7779999988763
Q ss_pred ---------CCeeEEEcccccCCCC-CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 320 ---------GLISMHISVSQRLPFF-ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 320 ---------g~i~~~~~d~~~lpf~-d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
..+.|.+.|....|++ +++||+|+|.+++.+ .++.....++.+++++|+|||+|++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliy-f~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIY-FDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGG-SCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHh-CCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 1377888888776665 578999999999965 45555789999999999999999984
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.7e-12 Score=124.89 Aligned_cols=99 Identities=18% Similarity=0.174 Sum_probs=80.6
Q ss_pred cEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcC-------------CeeEEEcccccCC----CC--CC
Q 043503 278 RIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRG-------------LISMHISVSQRLP----FF--EN 337 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg-------------~i~~~~~d~~~lp----f~--d~ 337 (430)
.+|||+|||+|.++..+++. +.+++++ |+++.|++.++++. .+.++++|+..++ ++ ++
T Consensus 36 ~~VLDlGcG~G~~~~~l~~~~~~~v~gv--D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 36 ITVLDLGCGKGGDLLKWKKGRINKLVCT--DIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp CEEEEETCTTTTTHHHHHHTTCSEEEEE--ESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CEEEEECCCCcHHHHHHHhcCCCEEEEE--eCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 45799999999999999977 6688988 67788888876541 3788999998876 53 45
Q ss_pred ceeEEEEccchhhcC--CchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 338 TLDIVHSMHVLSNWI--PDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 338 sfDlV~~~~~L~~~~--~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
+||+|+|+.++ ||. +......++.++.++|||||+|+++.+
T Consensus 114 ~fD~V~~~~~l-~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 114 CFDICSCQFVC-HYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp CEEEEEEETCG-GGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CEEEEEEecch-hhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 99999999988 555 334467999999999999999998755
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.1e-11 Score=115.40 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=92.7
Q ss_pred ccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCC--CCCCceeEEEEcc
Q 043503 277 IRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLP--FFENTLDIVHSMH 346 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lp--f~d~sfDlV~~~~ 346 (430)
..+|||+|||+|.++..+++++. +|+++ |+++.+++.|+++ + .+.++.+|+..++ +++++||+|+++.
T Consensus 50 ~~~vLDlG~G~G~~~~~la~~~~~~v~gv--Di~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np 127 (259)
T 3lpm_A 50 KGKIIDLCSGNGIIPLLLSTRTKAKIVGV--EIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP 127 (259)
T ss_dssp CCEEEETTCTTTHHHHHHHTTCCCEEEEE--CCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred CCEEEEcCCchhHHHHHHHHhcCCcEEEE--ECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence 34579999999999999999854 88888 7778888777654 3 3889999988776 5578999999965
Q ss_pred chhhc-----------------CCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 347 VLSNW-----------------IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 347 ~L~~~-----------------~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.+... .....+..++..+.++|||||++++.. .......+...+.+.||...+..
T Consensus 128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~----~~~~~~~~~~~l~~~~~~~~~~~ 199 (259)
T 3lpm_A 128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH----RPERLLDIIDIMRKYRLEPKRIQ 199 (259)
T ss_dssp CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE----CTTTHHHHHHHHHHTTEEEEEEE
T ss_pred CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE----cHHHHHHHHHHHHHCCCceEEEE
Confidence 44221 011235679999999999999999853 23345667788899999877655
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.8e-11 Score=123.21 Aligned_cols=99 Identities=19% Similarity=0.179 Sum_probs=81.3
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCCCceeEEEEccchhhc-
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFENTLDIVHSMHVLSNW- 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~- 351 (430)
.+|||+|||+|.++..+++++.+|+++ |+++.+++.++++ +. +.++.+|+...+.++++||+|+++..+++.
T Consensus 235 ~~VLDlGcG~G~~~~~la~~g~~V~gv--Dis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~ 312 (381)
T 3dmg_A 235 RQVLDLGAGYGALTLPLARMGAEVVGV--EDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGG 312 (381)
T ss_dssp CEEEEETCTTSTTHHHHHHTTCEEEEE--ESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTC
T ss_pred CEEEEEeeeCCHHHHHHHHcCCEEEEE--ECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhcc
Confidence 456999999999999999999999998 5668888777654 43 789999998887777899999998777431
Q ss_pred -CCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 352 -IPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 352 -~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
........++.++.++|+|||.+++..
T Consensus 313 ~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 313 AVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp SSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 123457889999999999999999963
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-11 Score=115.38 Aligned_cols=127 Identities=19% Similarity=0.206 Sum_probs=86.2
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCC-hhHHHHH---Hhc----CC--eeEEEcccccCCCC-CCceeEEEE
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLD-GPFNSFI---ASR----GL--ISMHISVSQRLPFF-ENTLDIVHS 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s-~~~le~a---~~r----g~--i~~~~~d~~~lpf~-d~sfDlV~~ 344 (430)
.+|||||||+|.++..++++ +.+|+|+ |++ +.|++.| +++ +. +.+..+|++.+|.. .+.+|.|++
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~~~v~Gv--D~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~ 103 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQNTFYIGI--DPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI 103 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTTEEEEEE--CSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred CEEEEEeccCcHHHHHHHHhCCCCEEEEE--eCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence 45799999999999999965 7788888 777 6776665 432 33 78899999988732 256777776
Q ss_pred ccchh----hcCCchhHHHHHHHHHHhccCCcEEEEeeccccC-----------cC----c-H-HHHHHHHHHcCCEEEE
Q 043503 345 MHVLS----NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG-----------SQ----L-N-ETYVPMLDRIGFKKLR 403 (430)
Q Consensus 345 ~~~L~----~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~-----------~~----~-~-~~~~~ll~~~Gfk~l~ 403 (430)
+.... ++..+ ...++.++.|+|||||.|++...+... +. . . +++..+++++||.+..
T Consensus 104 ~~~~~~~~~~~~~~--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~ 181 (225)
T 3p2e_A 104 LFPWGTLLEYVIKP--NRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDD 181 (225)
T ss_dssp ESCCHHHHHHHHTT--CHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEE
T ss_pred eCCCcHHhhhhhcc--hHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeee
Confidence 54321 11111 246899999999999999982211100 00 0 1 1378899999999887
Q ss_pred EEecc
Q 043503 404 WNVGM 408 (430)
Q Consensus 404 ~~~~~ 408 (430)
...-.
T Consensus 182 ~~~~~ 186 (225)
T 3p2e_A 182 VKELD 186 (225)
T ss_dssp EEEEC
T ss_pred eeecC
Confidence 66443
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-12 Score=129.78 Aligned_cols=114 Identities=11% Similarity=0.117 Sum_probs=85.6
Q ss_pred HHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CC-EEEEEecCCChhHHHHHHh-----------c----CCeeEEE
Q 043503 264 GIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NV-TIITTSLNLDGPFNSFIAS-----------R----GLISMHI 326 (430)
Q Consensus 264 ~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~-----------r----g~i~~~~ 326 (430)
.+..++..+......+|||||||+|.++..++.. ++ +|+|+ |+++.+++.|++ . +.+.|++
T Consensus 161 ~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGI--DiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~ 238 (438)
T 3uwp_A 161 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGV--EKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 238 (438)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEE--ECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEE--eCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 3555555443334456799999999999999865 66 48988 666776665543 1 3489999
Q ss_pred cccccCCCCC--CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 327 SVSQRLPFFE--NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 327 ~d~~~lpf~d--~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
+|+..+++.+ ..||+|+++..+ + .++ ....|.++.|+|||||.|++.++++..
T Consensus 239 GD~~~lp~~d~~~~aDVVf~Nn~~-F-~pd--l~~aL~Ei~RvLKPGGrIVssE~f~p~ 293 (438)
T 3uwp_A 239 GDFLSEEWRERIANTSVIFVNNFA-F-GPE--VDHQLKERFANMKEGGRIVSSKPFAPL 293 (438)
T ss_dssp CCTTSHHHHHHHHTCSEEEECCTT-C-CHH--HHHHHHHHHTTSCTTCEEEESSCSSCT
T ss_pred CcccCCccccccCCccEEEEcccc-c-Cch--HHHHHHHHHHcCCCCcEEEEeecccCC
Confidence 9999888754 479999997665 2 333 788899999999999999999887654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.5e-11 Score=115.31 Aligned_cols=140 Identities=17% Similarity=0.150 Sum_probs=100.5
Q ss_pred cCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C--CeeEEEcc
Q 043503 257 DNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G--LISMHISV 328 (430)
Q Consensus 257 ~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d 328 (430)
++......++.++...+ ....+|||+|||+|.++..+++. +.+|+++ |+++.+++.++++ | .+.++.+|
T Consensus 91 pr~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~v--D~s~~~l~~a~~n~~~~~~~~v~~~~~d 167 (276)
T 2b3t_A 91 PRPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAV--DRMPDAVSLAQRNAQHLAIKNIHILQSD 167 (276)
T ss_dssp CCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEE--CSSHHHHHHHHHHHHHHTCCSEEEECCS
T ss_pred cCchHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCceEEEEcc
Confidence 34445555666666553 23346799999999999999976 6789988 7788888877655 4 38888888
Q ss_pred cccCCCCCCceeEEEEccchhh------------cCCc----------hhHHHHHHHHHHhccCCcEEEEeeccccCcCc
Q 043503 329 SQRLPFFENTLDIVHSMHVLSN------------WIPD----------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQL 386 (430)
Q Consensus 329 ~~~lpf~d~sfDlV~~~~~L~~------------~~~d----------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~ 386 (430)
+.. ++++++||+|+++..... +.|. .....++.++.++|+|||++++..- ...
T Consensus 168 ~~~-~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~----~~~ 242 (276)
T 2b3t_A 168 WFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG----WQQ 242 (276)
T ss_dssp TTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC----SSC
T ss_pred hhh-hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC----chH
Confidence 765 244678999999743211 1221 2357899999999999999998642 233
Q ss_pred HHHHHHHHHHcCCEEEEE
Q 043503 387 NETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 387 ~~~~~~ll~~~Gfk~l~~ 404 (430)
.+.+.+++++.||+.+..
T Consensus 243 ~~~~~~~l~~~Gf~~v~~ 260 (276)
T 2b3t_A 243 GEAVRQAFILAGYHDVET 260 (276)
T ss_dssp HHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 567888999999986543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.27 E-value=7.3e-11 Score=112.44 Aligned_cols=124 Identities=15% Similarity=0.096 Sum_probs=85.5
Q ss_pred CccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhH----HHHHHhcCCeeEEEcccccCC---CCCCceeEEEEc
Q 043503 276 TIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPF----NSFIASRGLISMHISVSQRLP---FFENTLDIVHSM 345 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~----le~a~~rg~i~~~~~d~~~lp---f~d~sfDlV~~~ 345 (430)
...+|||+|||+|.++..+++. ..+|+++ |+++.| ++.++++..+.++++|+.... ...++||+|++.
T Consensus 76 ~g~~VLDlG~GtG~~t~~la~~v~~~G~V~av--D~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 76 KGTKVLYLGAASGTTISHVSDIIELNGKAYGV--EFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHTTTSEEEEE--ECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCEEEEEeecCCHHHHHHHHHhCCCCEEEEE--ECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 3456799999999999999986 4589998 666765 355566667888999986543 124689999996
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc-c-----cCcCcHHHHHHHHHHcCCEEEEEEe
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF-C-----FGSQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~-~-----~~~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
... ++ ....++..+.++|||||+|+++-.. | ...+..+.....+++.||++++...
T Consensus 154 ~a~----~~-~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~ 215 (232)
T 3id6_C 154 IAQ----PD-QTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIIN 215 (232)
T ss_dssp CCC----TT-HHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEE
T ss_pred CCC----hh-HHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEec
Confidence 332 33 2344455667799999999986211 1 1122334566678888999887553
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-11 Score=123.53 Aligned_cols=111 Identities=15% Similarity=0.229 Sum_probs=82.4
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLPFFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lpf~d 336 (430)
.+.++.........+|||+|||+|.++..++++|. +|+++ |++ .|++.++++ +. +.++.+|++.++++
T Consensus 52 ~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gv--D~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~- 127 (376)
T 3r0q_C 52 FNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAV--EAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP- 127 (376)
T ss_dssp HHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEE--ESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-
T ss_pred HHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEE--ccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-
Confidence 33443333333345679999999999999999977 99999 455 666666543 33 89999999998876
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
++||+|++.........+..+..++.++.++|+|||+++++..
T Consensus 128 ~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 128 EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 8999999965443323334588899999999999999987543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=9.6e-12 Score=116.78 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=85.2
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccC-C--CCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRL-P--FFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~l-p--f~d~sfDlV~~~~ 346 (430)
.+|||||||+|.++..+++. +..|+|+ |+++.+++.|+++ |. +.++.+|+..+ + +++++||.|++.+
T Consensus 36 ~~vLDiGcG~G~~~~~lA~~~p~~~v~gi--D~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 36 PVTLEIGFGMGASLVAMAKDRPEQDFLGI--EVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CEEEEESCTTCHHHHHHHHHCTTSEEEEE--CSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CeEEEEeeeChHHHHHHHHHCCCCeEEEE--EecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 45799999999999999987 5678988 7788888776654 43 88999998774 4 6789999999964
Q ss_pred chhhcCCchhH------HHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHH-cCCEEE
Q 043503 347 VLSNWIPDSML------EFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDR-IGFKKL 402 (430)
Q Consensus 347 ~L~~~~~d~~l------~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~-~Gfk~l 402 (430)
.. .|...... ..++.++.|+|||||+|++.+ ......+...+.+.. .+|+.+
T Consensus 114 ~~-p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t---d~~~~~~~~~~~~~~~~~~~~~ 172 (218)
T 3dxy_A 114 PD-PWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT---DWEPYAEHMLEVMSSIDGYKNL 172 (218)
T ss_dssp CC-CCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE---SCHHHHHHHHHHHHTSTTEEEC
T ss_pred CC-CccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe---CCHHHHHHHHHHHHhCCCcccc
Confidence 43 33322111 259999999999999999864 222333444445554 346544
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.2e-11 Score=111.62 Aligned_cols=121 Identities=14% Similarity=0.158 Sum_probs=87.2
Q ss_pred ccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChh----HHHHHHhcCCeeEEEccccc---CCCCCCceeEEEEcc
Q 043503 277 IRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGP----FNSFIASRGLISMHISVSQR---LPFFENTLDIVHSMH 346 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~----~le~a~~rg~i~~~~~d~~~---lpf~d~sfDlV~~~~ 346 (430)
..+|||+|||+|.++..++++ +.+|+++ |+++. +.+.++.+..+.++.+|+.. +++.+++||+|++..
T Consensus 78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gv--D~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~ 155 (233)
T 2ipx_A 78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAV--EFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADV 155 (233)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEE--CCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECC
T ss_pred CCEEEEEcccCCHHHHHHHHHhCCCcEEEEE--ECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcC
Confidence 346799999999999999987 3789988 66755 45566666668899999876 455678999999953
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeecccc-C--cC----cHHHHHHHHHHcCCEEEEEE
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF-G--SQ----LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~-~--~~----~~~~~~~ll~~~Gfk~l~~~ 405 (430)
. .++ ....++.++.++|||||+++++..... . .. ..++ .+++++.||+.++..
T Consensus 156 ~----~~~-~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gf~~~~~~ 215 (233)
T 2ipx_A 156 A----QPD-QTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE-VKKMQQENMKPQEQL 215 (233)
T ss_dssp C----CTT-HHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH-HHTTGGGTEEEEEEE
T ss_pred C----Ccc-HHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH-HHHHHHCCCceEEEE
Confidence 3 222 245678899999999999999533210 0 01 1122 477888999988743
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-11 Score=121.39 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=76.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc-------CCeeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR-------GLISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||+|||+|.++..++++|. +|+++|+ ++ |++.|+++ ..+.++.+|+..+++++++||+|++..+..
T Consensus 66 ~~VLDiGcGtG~ls~~la~~g~~~v~gvD~--s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 142 (340)
T 2fyt_A 66 KVVLDVGCGTGILSMFAAKAGAKKVLGVDQ--SE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY 142 (340)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEES--ST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred CEEEEeeccCcHHHHHHHHcCCCEEEEECh--HH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchh
Confidence 4579999999999999999875 8999955 44 77666543 348999999999998889999999976322
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
.+.....+..++.++.|+|||||.++.
T Consensus 143 ~l~~~~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 143 FLLFESMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp TBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred hccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence 222333478899999999999999973
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-11 Score=123.22 Aligned_cols=97 Identities=20% Similarity=0.303 Sum_probs=77.0
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||+|||+|.++..+++++. +|+++|+ ++ +++.|+++ |. +.++.+|++.+++++++||+|++..+..
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g~~~v~gvD~--s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAGARKVIGIEC--SS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 144 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTTCSEEEEEEC--ST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CEEEEEeccchHHHHHHHHCCCCEEEEECc--HH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccc
Confidence 4569999999999999999965 9999955 43 77666543 33 8999999999999889999999965433
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.......+..++.++.|+|||||+++..
T Consensus 145 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 145 CLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 3223334889999999999999998743
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=111.86 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=78.9
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCC--CCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLP--FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lp--f~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.++..+++++. +|+++ |+++.+++.++++ + .+.++++|+..++ +++++||+|++...+
T Consensus 46 ~~vLDlgcG~G~~~~~~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 46 LAVLDLYAGSGALGLEALSRGAASVLFV--ESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY 123 (189)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCSEEEEE--ECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred CEEEEeCCCcCHHHHHHHHCCCCeEEEE--ECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence 4569999999999998888864 78988 6678888777654 4 4889999987764 457899999998776
Q ss_pred hhcCCchhHHHHHHHHHH--hccCCcEEEEeecc
Q 043503 349 SNWIPDSMLEFTLYDIYR--LLRPGGIFWLDRFF 380 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~R--vLrPGG~lvl~~f~ 380 (430)
++ . ......++.++.+ +|+|||.+++.+..
T Consensus 124 ~~-~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 124 NV-D-SADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp TS-C-HHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred Cc-c-hhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 32 2 1247889999999 99999999997644
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.6e-11 Score=113.53 Aligned_cols=116 Identities=12% Similarity=-0.016 Sum_probs=89.9
Q ss_pred CccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc-----C--CeeEEEcccccCCCCCCceeEEEEc
Q 043503 276 TIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR-----G--LISMHISVSQRLPFFENTLDIVHSM 345 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r-----g--~i~~~~~d~~~lpf~d~sfDlV~~~ 345 (430)
...+|||+|||+|.++..+++. +.+|+++ |+++.+++.++++ | .+.+..+|+...++++++||+|++.
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~--D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~ 173 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLARAVGEKGLVESY--EARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALD 173 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEE--ESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEE--eCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEEC
Confidence 3346799999999999999988 6799988 6678888777655 3 4888999998887888899999983
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEE
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
.++ ...++.++.++|+|||++++.... ......+.+.+++.||..++.
T Consensus 174 ------~~~--~~~~l~~~~~~L~~gG~l~~~~~~---~~~~~~~~~~l~~~gf~~~~~ 221 (258)
T 2pwy_A 174 ------LME--PWKVLEKAALALKPDRFLVAYLPN---ITQVLELVRAAEAHPFRLERV 221 (258)
T ss_dssp ------SSC--GGGGHHHHHHHEEEEEEEEEEESC---HHHHHHHHHHHTTTTEEEEEE
T ss_pred ------CcC--HHHHHHHHHHhCCCCCEEEEEeCC---HHHHHHHHHHHHHCCCceEEE
Confidence 223 346899999999999999986533 122345666778899986543
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=108.02 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=84.6
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC--------CCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP--------FFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp--------f~d~sfDlV~~~~ 346 (430)
.+|||+|||+|.++..+++. +.+++++|++ + +.+. ..+.+..+|+...+ +++++||+|++..
T Consensus 24 ~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~--~-~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~ 96 (180)
T 1ej0_A 24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLL--P-MDPI----VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDM 96 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESS--C-CCCC----TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECc--c-cccc----CcEEEEEcccccchhhhhhhccCCCCceeEEEECC
Confidence 45799999999999999987 4799999654 3 3322 44788899988876 6788999999977
Q ss_pred chhhcCCch---h------HHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 347 VLSNWIPDS---M------LEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 347 ~L~~~~~d~---~------l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.++ +.... . ...++.++.++|+|||.+++..+.. .....+.+.+... |+.+...
T Consensus 97 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~---~~~~~~~~~~~~~-~~~~~~~ 159 (180)
T 1ej0_A 97 APN-MSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG---EGFDEYLREIRSL-FTKVKVR 159 (180)
T ss_dssp CCC-CCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS---TTHHHHHHHHHHH-EEEEEEE
T ss_pred Ccc-ccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC---CcHHHHHHHHHHh-hhhEEee
Confidence 763 33321 0 1688999999999999999976542 2234455556654 7776654
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-11 Score=118.61 Aligned_cols=123 Identities=16% Similarity=0.133 Sum_probs=86.1
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc-CCeeEE-EcccccCC---CCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR-GLISMH-ISVSQRLP---FFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r-g~i~~~-~~d~~~lp---f~d~sfDlV~~~~~L~~~ 351 (430)
++|||+|||||.++..++++|. +|+++ |+++.|++.+.++ ..+... ..+++.++ ++..+||+|++..++++
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~ga~~V~aV--Dvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s- 163 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQNGAKLVYAV--DVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS- 163 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEE--CSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSC-
T ss_pred cEEEecCCCccHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhh-
Confidence 4679999999999999999975 89998 7778888775443 233222 23444433 34456999999766632
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEe---eccccCc------C---------cHHHHHHHHHHcCCEEEEEEecc
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLD---RFFCFGS------Q---------LNETYVPMLDRIGFKKLRWNVGM 408 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~---~f~~~~~------~---------~~~~~~~ll~~~Gfk~l~~~~~~ 408 (430)
+..+|.++.|+|+|||.+++. .|-.... . ..+.+..++..+||.+..+...+
T Consensus 164 -----l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 164 -----LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSP 233 (291)
T ss_dssp -----GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECS
T ss_pred -----HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECC
Confidence 456899999999999999885 2211100 0 12457778899999988876543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.7e-11 Score=121.24 Aligned_cols=122 Identities=14% Similarity=0.147 Sum_probs=94.5
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCch
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
.+|||||||+|.++..++++ +.+++++ |+ +.+++.+++...+.++.+|+.. +++ .||+|++.+++++| ++.
T Consensus 195 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~--D~-~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~-~d~ 267 (358)
T 1zg3_A 195 ESLVDVGGGTGGVTKLIHEIFPHLKCTVF--DQ-PQVVGNLTGNENLNFVGGDMFK-SIP--SADAVLLKWVLHDW-NDE 267 (358)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEE--EC-HHHHSSCCCCSSEEEEECCTTT-CCC--CCSEEEEESCGGGS-CHH
T ss_pred CEEEEECCCcCHHHHHHHHHCCCCeEEEe--cc-HHHHhhcccCCCcEEEeCccCC-CCC--CceEEEEcccccCC-CHH
Confidence 56799999999999999988 5678877 55 5677666544448899999876 665 49999999999765 453
Q ss_pred hHHHHHHHHHHhccC---CcEEEEeeccccCcC-------------------------cHHHHHHHHHHcCCEEEEEEe
Q 043503 356 MLEFTLYDIYRLLRP---GGIFWLDRFFCFGSQ-------------------------LNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 356 ~l~~~L~ei~RvLrP---GG~lvl~~f~~~~~~-------------------------~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
....+|+++.++|+| ||++++.++...... ..++|.++++++||+.++...
T Consensus 268 ~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 346 (358)
T 1zg3_A 268 QSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITP 346 (358)
T ss_dssp HHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEEe
Confidence 456999999999999 999998776543211 235688899999999887653
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-11 Score=132.68 Aligned_cols=97 Identities=13% Similarity=0.143 Sum_probs=82.6
Q ss_pred cEEEEEcCCccHHHHHHHHcC---CEEEEEecCCChhHHHHHHhc----------CC--eeEEEcccccCCCCCCceeEE
Q 043503 278 RIGLDIGGGTGTFAARMRERN---VTIITTSLNLDGPFNSFIASR----------GL--ISMHISVSQRLPFFENTLDIV 342 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g---~~Vv~vdiD~s~~~le~a~~r----------g~--i~~~~~d~~~lpf~d~sfDlV 342 (430)
.+|||||||+|.++..+++++ .+|+++ |+++.|++.|+++ +. +.++++|+..+++.+++||+|
T Consensus 723 ~rVLDVGCGTG~lai~LAr~g~p~a~VtGV--DIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 723 STLVDFGCGSGSLLDSLLDYPTSLQTIIGV--DISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp SEEEEETCSSSHHHHHHTSSCCCCCEEEEE--ESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCCeEEEE--ECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence 456999999999999999986 799998 7778999888762 32 899999999999999999999
Q ss_pred EEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 343 HSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 343 ~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
++..+++| +++.....++.++.|+|||| .++++.
T Consensus 801 V~~eVLeH-L~dp~l~~~L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 801 TCLEVIEH-MEEDQACEFGEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp EEESCGGG-SCHHHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred EEeCchhh-CChHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 99999966 56545667999999999999 777754
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-11 Score=110.28 Aligned_cols=92 Identities=17% Similarity=0.114 Sum_probs=75.8
Q ss_pred CccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccchh
Q 043503 276 TIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
...+|||+|||+|.++..+++.+.+|+++ |+++.+++.++++ + .+.++.+|....+..+++||+|++..++.
T Consensus 77 ~~~~vLdiG~G~G~~~~~la~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~ 154 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILAHLVQHVCSV--ERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPP 154 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEE--ESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBCS
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEE--ecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccchh
Confidence 34567999999999999999999999998 6678888877765 3 38899999877666678999999988885
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+ +++ ++.++|+|||++++..
T Consensus 155 ~-~~~--------~~~~~L~pgG~lv~~~ 174 (210)
T 3lbf_A 155 E-IPT--------ALMTQLDEGGILVLPV 174 (210)
T ss_dssp S-CCT--------HHHHTEEEEEEEEEEE
T ss_pred h-hhH--------HHHHhcccCcEEEEEE
Confidence 4 544 5789999999999864
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-11 Score=114.33 Aligned_cols=119 Identities=18% Similarity=0.265 Sum_probs=84.0
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----------C--CeeEEEccccc-CC--CCCCcee
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----------G--LISMHISVSQR-LP--FFENTLD 340 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----------g--~i~~~~~d~~~-lp--f~d~sfD 340 (430)
.+|||||||+|.++..++++ +..|+|+ |+++.|++.|+++ + .+.++.+|+.. ++ +++++||
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~p~~~v~Gi--Dis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 48 VEFADIGCGYGGLLVELSPLFPDTLILGL--EIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp EEEEEETCTTCHHHHHHGGGSTTSEEEEE--ESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CeEEEEccCCcHHHHHHHHHCCCCeEEEE--ECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 45799999999999999987 5788988 7788888776532 2 38899999876 66 7789999
Q ss_pred EEEEccchhhcCCch------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcC-CEEE
Q 043503 341 IVHSMHVLSNWIPDS------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIG-FKKL 402 (430)
Q Consensus 341 lV~~~~~L~~~~~d~------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~G-fk~l 402 (430)
.|++...- .|.... ....++.++.++|||||.|++.... ........+.+...| |..+
T Consensus 126 ~v~~~~~d-p~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~---~~~~~~~~~~l~~~~~f~~~ 190 (235)
T 3ckk_A 126 KMFFLFPD-PHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV---LELHDWMCTHFEEHPLFERV 190 (235)
T ss_dssp EEEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEESC---HHHHHHHHHHHHTSTTEEEE
T ss_pred EEEEeCCC-chhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC---HHHHHHHHHHHHHCCCcccc
Confidence 99985433 222100 0146999999999999999986422 223344455566666 5443
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-11 Score=116.21 Aligned_cols=116 Identities=17% Similarity=0.086 Sum_probs=89.8
Q ss_pred CccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc-----C--CeeEEEcccccCCCCCCceeEEEEc
Q 043503 276 TIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR-----G--LISMHISVSQRLPFFENTLDIVHSM 345 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r-----g--~i~~~~~d~~~lpf~d~sfDlV~~~ 345 (430)
...+|||+|||+|.++..+++. +.+|+++ |+++.+++.++++ | .+.++.+|+.. ++++++||+|++.
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~~ 186 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVV--ERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIAD 186 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEE--CSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEEC
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEE--ECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEEc
Confidence 3356799999999999999987 6899988 7778888777654 3 38888898876 6677899999992
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.++ ...++.++.++|+|||++++.... ....+.+.+.+.+.||..++..
T Consensus 187 ------~~~--~~~~l~~~~~~LkpgG~l~i~~~~---~~~~~~~~~~l~~~Gf~~~~~~ 235 (275)
T 1yb2_A 187 ------IPD--PWNHVQKIASMMKPGSVATFYLPN---FDQSEKTVLSLSASGMHHLETV 235 (275)
T ss_dssp ------CSC--GGGSHHHHHHTEEEEEEEEEEESS---HHHHHHHHHHSGGGTEEEEEEE
T ss_pred ------CcC--HHHHHHHHHHHcCCCCEEEEEeCC---HHHHHHHHHHHHHCCCeEEEEE
Confidence 233 457899999999999999997533 1123556677888999877654
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.1e-11 Score=114.74 Aligned_cols=120 Identities=15% Similarity=0.059 Sum_probs=90.1
Q ss_pred CccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCC---CCceeEEEE
Q 043503 276 TIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFF---ENTLDIVHS 344 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~---d~sfDlV~~ 344 (430)
...+|||||||+|..+..++.. +.+|+++ |+++.+++.++++ |. +.+++++++.++.. +++||+|++
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLV--DATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEE--ESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence 3456799999999999999876 6789988 6778888777654 43 88999999887743 479999999
Q ss_pred ccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 345 MHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 345 ~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
..+ .+ +..++..+.++|||||+|++..-. ...+....+...+...||+..+..
T Consensus 158 ~a~-----~~--~~~ll~~~~~~LkpgG~l~~~~g~-~~~~e~~~~~~~l~~~G~~~~~~~ 210 (249)
T 3g89_A 158 RAV-----AP--LCVLSELLLPFLEVGGAAVAMKGP-RVEEELAPLPPALERLGGRLGEVL 210 (249)
T ss_dssp ESS-----CC--HHHHHHHHGGGEEEEEEEEEEECS-CCHHHHTTHHHHHHHHTEEEEEEE
T ss_pred CCc-----CC--HHHHHHHHHHHcCCCeEEEEEeCC-CcHHHHHHHHHHHHHcCCeEEEEE
Confidence 532 23 678999999999999999874311 011122446677888999877654
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.9e-11 Score=115.78 Aligned_cols=116 Identities=15% Similarity=0.140 Sum_probs=91.4
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||+|||+|.++..+++.+. +|+++ |+++.+++.++++ +. +.++++|+..++. +++||+|++....
T Consensus 127 ~~VLDlgcG~G~~~~~la~~~~~~V~~v--D~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p~- 202 (278)
T 2frn_A 127 ELVVDMFAGIGHLSLPIAVYGKAKVIAI--EKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYVV- 202 (278)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCCEEEEE--CCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCCS-
T ss_pred CEEEEecccCCHHHHHHHHhCCCEEEEE--ECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCch-
Confidence 3569999999999999999876 58888 7788888777654 33 7899999988776 7899999995332
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeecccc---CcCcHHHHHHHHHHcCCEEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF---GSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~---~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
. ...++.++.++|+|||++++.++... .....+.+...+++.||+...
T Consensus 203 ----~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 203 ----R--THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ----S--GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred ----h--HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 1 35688999999999999999776532 133456788899999998765
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.7e-11 Score=120.59 Aligned_cols=115 Identities=12% Similarity=0.083 Sum_probs=84.5
Q ss_pred hhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C-----CeeEEEccc
Q 043503 261 LDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G-----LISMHISVS 329 (430)
Q Consensus 261 ~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g-----~i~~~~~d~ 329 (430)
.+.....++..++.....+|||+|||+|.++..++++ +.+|+++ |+++.+++.++++ | .+.++.+|+
T Consensus 207 ~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gv--D~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~ 284 (375)
T 4dcm_A 207 LDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFV--DESPMAVASSRLNVETNMPEALDRCEFMINNA 284 (375)
T ss_dssp CCHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEE--ESCHHHHHHHHHHHHHHCGGGGGGEEEEECST
T ss_pred ccHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEE--ECcHHHHHHHHHHHHHcCCCcCceEEEEechh
Confidence 3333344555555433356799999999999999998 6899998 6678888777654 4 267788888
Q ss_pred ccCCCCCCceeEEEEccchhh--cCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 330 QRLPFFENTLDIVHSMHVLSN--WIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 330 ~~lpf~d~sfDlV~~~~~L~~--~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.. ++++++||+|+++..+++ ++.+.....++.++.++|+|||.+++..
T Consensus 285 ~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 285 LS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp TT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 76 566789999999887743 2334345678999999999999999964
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-11 Score=109.33 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=83.3
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcC--CeeEEEcccccCCC---CCCceeEEEEccchhhcC
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRG--LISMHISVSQRLPF---FENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg--~i~~~~~d~~~lpf---~d~sfDlV~~~~~L~~~~ 352 (430)
.+|||+|||. + .+|+++.|++.|+++. .+.++++|++.+++ ++++||+|+|+.++++ +
T Consensus 14 ~~vL~~~~g~--------------v--~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~-~ 76 (176)
T 2ld4_A 14 QFVAVVWDKS--------------S--PVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGS-T 76 (176)
T ss_dssp SEEEEEECTT--------------S--CHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTC-C
T ss_pred CEEEEecCCc--------------e--eeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhh-c
Confidence 4569999996 1 2588899999998773 48999999999887 7899999999999954 5
Q ss_pred -CchhHHHHHHHHHHhccCCcEEEEeeccccCc------CcHHHHHHHHHHcCC
Q 043503 353 -PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS------QLNETYVPMLDRIGF 399 (430)
Q Consensus 353 -~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~------~~~~~~~~ll~~~Gf 399 (430)
++ ...++.+++|+|||||+|++.+...... ...+.+..+++++||
T Consensus 77 ~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 77 TLH--SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp CCC--CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred ccC--HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 55 6889999999999999999976543211 124689999999999
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.2e-12 Score=115.76 Aligned_cols=138 Identities=12% Similarity=0.082 Sum_probs=84.0
Q ss_pred hhHHHHHHHccCCC-CCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C-CeeEEEcccccC
Q 043503 261 LDYGIDQVLSMKPL-GTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G-LISMHISVSQRL 332 (430)
Q Consensus 261 ~~~~id~lL~~~p~-~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g-~i~~~~~d~~~l 332 (430)
....++.++..++. ....+|||+|||+|.++..+++. +.+++++ |+++.+++.++++ + .+.++++|+..
T Consensus 14 ~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~- 90 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAV--DLSMDALAVARRNAERFGAVVDWAAADGIE- 90 (215)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEE--ECC-------------------CCHHHHHH-
T ss_pred HHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEE--ECCHHHHHHHHHHHHHhCCceEEEEcchHh-
Confidence 33445555544332 33456799999999999999998 5688988 5667777777654 2 26677777766
Q ss_pred CCCC-----CceeEEEEccchhh------cCCc-----------------hhHHHHHHHHHHhccCCcE-EEEeeccccC
Q 043503 333 PFFE-----NTLDIVHSMHVLSN------WIPD-----------------SMLEFTLYDIYRLLRPGGI-FWLDRFFCFG 383 (430)
Q Consensus 333 pf~d-----~sfDlV~~~~~L~~------~~~d-----------------~~l~~~L~ei~RvLrPGG~-lvl~~f~~~~ 383 (430)
++++ ++||+|+++..+.. +.+. .....++.++.++|||||+ +++.. .
T Consensus 91 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~--- 166 (215)
T 4dzr_A 91 WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV-G--- 166 (215)
T ss_dssp HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC-T---
T ss_pred hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE-C---
Confidence 5555 89999999644321 0010 0016789999999999999 55532 1
Q ss_pred cCcHHHHHHHHH--HcCCEEEEEE
Q 043503 384 SQLNETYVPMLD--RIGFKKLRWN 405 (430)
Q Consensus 384 ~~~~~~~~~ll~--~~Gfk~l~~~ 405 (430)
....+.+.+++. +.||..+...
T Consensus 167 ~~~~~~~~~~l~~~~~gf~~~~~~ 190 (215)
T 4dzr_A 167 HNQADEVARLFAPWRERGFRVRKV 190 (215)
T ss_dssp TSCHHHHHHHTGGGGGGTEECCEE
T ss_pred CccHHHHHHHHHHhhcCCceEEEE
Confidence 233567788888 8999766543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-11 Score=116.05 Aligned_cols=91 Identities=21% Similarity=0.327 Sum_probs=77.6
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcCC-eeEEEcccccCCCCCCceeEEEEccchhhcCCc
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d 354 (430)
.+|||+|||+|.++..+++. +.+|+++ |+++.+++.+++++. +.+..+|+..+++++++||+|++..+.
T Consensus 87 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~------ 158 (269)
T 1p91_A 87 TAVLDIGCGEGYYTHAFADALPEITTFGL--DVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP------ 158 (269)
T ss_dssp CEEEEETCTTSTTHHHHHHTCTTSEEEEE--ESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC------
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCeEEEE--eCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh------
Confidence 45799999999999999997 7899988 778999999988754 788999999999989999999985432
Q ss_pred hhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 355 SMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
..+.++.|+|||||.+++..+.
T Consensus 159 ----~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 159 ----CKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp ----CCHHHHHHHEEEEEEEEEEEEC
T ss_pred ----hhHHHHHHhcCCCcEEEEEEcC
Confidence 1478999999999999987644
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.6e-11 Score=117.10 Aligned_cols=91 Identities=9% Similarity=0.106 Sum_probs=73.7
Q ss_pred cEEEEEcCCccHHHHH-HHHc-CCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAAR-MRER-NVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~-La~~-g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||||||+|.++.. +++. +.+|+++ |+++.|++.|+++ | .+.++++|+..++ +++||+|++...
T Consensus 124 ~rVLDIGcG~G~~ta~~lA~~~ga~V~gI--Dis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 124 ERAVFIGGGPLPLTGILLSHVYGMRVNVV--EIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAAL-- 197 (298)
T ss_dssp CEEEEECCCSSCHHHHHHHHTTCCEEEEE--ESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECTT--
T ss_pred CEEEEECCCccHHHHHHHHHccCCEEEEE--ECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECCC--
Confidence 4569999999977654 4543 8999998 6678999888765 4 3899999998876 789999998533
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.++ ...++.++.|+|||||.+++..
T Consensus 198 --~~d--~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 198 --AEP--KRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp --CSC--HHHHHHHHHHHCCTTCEEEEEE
T ss_pred --ccC--HHHHHHHHHHHcCCCcEEEEEc
Confidence 344 7889999999999999999865
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.19 E-value=4e-11 Score=119.72 Aligned_cols=97 Identities=14% Similarity=0.190 Sum_probs=75.2
Q ss_pred cEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
.+|||+|||+|.++..+++++ .+|+++ |+++.+++.++++ +. +.++.+|....+ +++||+|+++..+++
T Consensus 198 ~~VLDlGcG~G~~~~~la~~~~~~~v~~v--D~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Iv~~~~~~~ 273 (343)
T 2pjd_A 198 GKVLDVGCGAGVLSVAFARHSPKIRLTLC--DVSAPAVEASRATLAANGVEGEVFASNVFSEV--KGRFDMIISNPPFHD 273 (343)
T ss_dssp SBCCBTTCTTSHHHHHHHHHCTTCBCEEE--ESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--CSCEEEEEECCCCCS
T ss_pred CeEEEecCccCHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHhCCCCEEEEccccccc--cCCeeEEEECCCccc
Confidence 346999999999999999885 588888 6678888777654 33 567777776543 779999999888743
Q ss_pred cC--CchhHHHHHHHHHHhccCCcEEEEee
Q 043503 351 WI--PDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 351 ~~--~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.. .......++.++.|+|||||.+++..
T Consensus 274 g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 303 (343)
T 2pjd_A 274 GMQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (343)
T ss_dssp SSHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CccCCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 11 12246789999999999999999864
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.18 E-value=9.1e-11 Score=111.01 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=88.8
Q ss_pred CccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEc
Q 043503 276 TIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSM 345 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~ 345 (430)
...+|||+|||+|.++..+++. +.+|+++ |+++.+++.|+++ | .+.++.+|+... +++++||+|++.
T Consensus 93 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~--D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~v~~~ 169 (255)
T 3mb5_A 93 PGDFIVEAGVGSGALTLFLANIVGPEGRVVSY--EIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEENVDHVILD 169 (255)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEE--CSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCSEEEEEEC
T ss_pred CCCEEEEecCCchHHHHHHHHHhCCCeEEEEE--ecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCCcCEEEEC
Confidence 3346799999999999999998 6889988 7778888887765 3 288899988753 678899999983
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcC--CEEEEE
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIG--FKKLRW 404 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~G--fk~l~~ 404 (430)
.++ ...++.++.++|+|||.+++.... ......+.+.+++.| |..++.
T Consensus 170 ------~~~--~~~~l~~~~~~L~~gG~l~~~~~~---~~~~~~~~~~l~~~g~~f~~~~~ 219 (255)
T 3mb5_A 170 ------LPQ--PERVVEHAAKALKPGGFFVAYTPC---SNQVMRLHEKLREFKDYFMKPRT 219 (255)
T ss_dssp ------SSC--GGGGHHHHHHHEEEEEEEEEEESS---HHHHHHHHHHHHHTGGGBSCCEE
T ss_pred ------CCC--HHHHHHHHHHHcCCCCEEEEEECC---HHHHHHHHHHHHHcCCCccccEE
Confidence 222 356899999999999999986533 223456777888999 875543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.9e-11 Score=109.95 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=75.4
Q ss_pred cEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHhc----C----CeeEEEcccccCCC--CCCc-eeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIASR----G----LISMHISVSQRLPF--FENT-LDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~r----g----~i~~~~~d~~~lpf--~d~s-fDlV~~~ 345 (430)
.+|||+|||+|.++..++.++ .+|+++ |+++.+++.|+++ + .+.++.+|+..+.. ++++ ||+|++.
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~~~~v~gv--D~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQAKKVTFL--ELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEE--CSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CeEEEcCCccCHHHHHHHHccCCEEEEE--ECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 346999999999999988886 488888 7788888887764 3 47889998766532 3678 9999997
Q ss_pred cchhhcCCchhHHHHHHHH--HHhccCCcEEEEeecc
Q 043503 346 HVLSNWIPDSMLEFTLYDI--YRLLRPGGIFWLDRFF 380 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei--~RvLrPGG~lvl~~f~ 380 (430)
..+ + .. ....++..+ .|+|+|||.+++....
T Consensus 133 ~~~-~-~~--~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 133 PPF-H-FN--LAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp CCS-S-SC--HHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred CCC-C-Cc--cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 664 2 22 367788888 6789999999987543
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.16 E-value=9.5e-11 Score=116.46 Aligned_cols=96 Identities=21% Similarity=0.292 Sum_probs=76.3
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||+|||+|.++..++++|. +|+++|+ + ++++.|+++ + .+.++.+|+..+++++++||+|++.....
T Consensus 40 ~~VLDiGcGtG~ls~~la~~g~~~v~~vD~--s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 40 KIVLDVGCGTGILSMFAAKHGAKHVIGVDM--S-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCSEEEEEES--S-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CEEEEecCccHHHHHHHHHCCCCEEEEECh--H-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence 3569999999999999999875 8999955 4 366665543 3 38899999999888888999999975543
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
.......+..++.++.|+|+|||.++.
T Consensus 117 ~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 117 FLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 333344578899999999999999974
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.16 E-value=9.2e-11 Score=109.21 Aligned_cols=91 Identities=19% Similarity=0.215 Sum_probs=74.2
Q ss_pred ccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCCCceeEEEEccchhhcC
Q 043503 277 IRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
..+|||+|||+|.++..+++.+.+|+++ |+++.+++.++++ +.+.++.+|+......+++||+|++..++++ +
T Consensus 71 ~~~vLdiG~G~G~~~~~l~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~-~ 147 (231)
T 1vbf_A 71 GQKVLEIGTGIGYYTALIAEIVDKVVSV--EINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPT-L 147 (231)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSSEEEEE--ESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSS-C
T ss_pred CCEEEEEcCCCCHHHHHHHHHcCEEEEE--eCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHHH-H
Confidence 3467999999999999999998899988 6678888888766 2588899988763334678999999988854 4
Q ss_pred CchhHHHHHHHHHHhccCCcEEEEee
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+ .++.++|+|||++++..
T Consensus 148 ~--------~~~~~~L~pgG~l~~~~ 165 (231)
T 1vbf_A 148 L--------CKPYEQLKEGGIMILPI 165 (231)
T ss_dssp C--------HHHHHTEEEEEEEEEEE
T ss_pred H--------HHHHHHcCCCcEEEEEE
Confidence 3 36889999999999874
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.16 E-value=5.9e-11 Score=106.00 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=74.4
Q ss_pred cEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHhc----C---CeeEEEccccc-CCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIASR----G---LISMHISVSQR-LPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~-lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.++..+++++ .+|+++ |+++.+++.++++ + .+.++.+|+.. ++..+++||+|++...+
T Consensus 33 ~~vLDlGcG~G~~~~~l~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~ 110 (177)
T 2esr_A 33 GRVLDLFAGSGGLAIEAVSRGMSAAVLV--EKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 110 (177)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCCEEEEE--CCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CeEEEeCCCCCHHHHHHHHcCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCC
Confidence 457999999999999999985 588988 7778888877654 3 37888888766 44445679999997655
Q ss_pred hhcCCchhHHHHHHHHH--HhccCCcEEEEeecc
Q 043503 349 SNWIPDSMLEFTLYDIY--RLLRPGGIFWLDRFF 380 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~--RvLrPGG~lvl~~f~ 380 (430)
.. ......+..+. ++|+|||++++....
T Consensus 111 ~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 111 AK----ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp HH----HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred Cc----chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 21 12456677776 999999999997644
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.16 E-value=9.9e-11 Score=106.98 Aligned_cols=112 Identities=16% Similarity=0.090 Sum_probs=84.5
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||+|||+|.++..++.. +.+++++ |+++.+++.++++ +. +.++.+|+..++ ++++||+|++.. +
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~-~- 141 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLL--DSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA-F- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTSEEEEE--ESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC-S-
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEec-c-
Confidence 35699999999999999987 6799988 6678888777654 33 888999988766 567899999843 2
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.+ ...++.++.++|+|||++++..- ....+.+..++. ||+.++..
T Consensus 142 ---~~--~~~~l~~~~~~L~~gG~l~~~~~----~~~~~~~~~~~~--g~~~~~~~ 186 (207)
T 1jsx_A 142 ---AS--LNDMVSWCHHLPGEQGRFYALKG----QMPEDEIALLPE--EYQVESVV 186 (207)
T ss_dssp ---SS--HHHHHHHHTTSEEEEEEEEEEES----SCCHHHHHTSCT--TEEEEEEE
T ss_pred ---CC--HHHHHHHHHHhcCCCcEEEEEeC----CCchHHHHHHhc--CCceeeee
Confidence 22 67899999999999999998642 222344544444 89877643
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4e-12 Score=119.40 Aligned_cols=120 Identities=13% Similarity=0.057 Sum_probs=87.5
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
.+|||+|||+|.++..+++.+.+|+++ |+++.+++.++++ | .+.++++|+..++ ++++||+|+++..+++
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~ 156 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTGMRVIAI--DIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGG 156 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSS
T ss_pred CEEEECccccCHHHHHHHHcCCEEEEE--ECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcCC
Confidence 346999999999999999999999998 6678888777654 4 4889999988876 6789999999877744
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeecccc---------CcCcHHHHHHHHHHcCCEEEE
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF---------GSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~---------~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
..+ ....+.++.++|+|||.+++...... .....+.+..++...|.-.+.
T Consensus 157 -~~~--~~~~~~~~~~~L~pgG~~i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~ 215 (241)
T 3gdh_A 157 -PDY--ATAETFDIRTMMSPDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIE 215 (241)
T ss_dssp -GGG--GGSSSBCTTTSCSSCHHHHHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTCCEEEE
T ss_pred -cch--hhhHHHHHHhhcCCcceeHHHHHHhhCCceEEECCCCCCHHHHHHHhccCCCEEEE
Confidence 333 33467789999999999776542111 111335566666666655444
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-10 Score=109.61 Aligned_cols=114 Identities=11% Similarity=-0.006 Sum_probs=81.0
Q ss_pred HHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc----CCEEEEEecCCChhHHHHHHhc---C----C----------
Q 043503 263 YGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER----NVTIITTSLNLDGPFNSFIASR---G----L---------- 321 (430)
Q Consensus 263 ~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~----g~~Vv~vdiD~s~~~le~a~~r---g----~---------- 321 (430)
..++.++...+.....+|||+|||+|.++..++++ +.+|+++ |+++.+++.|+++ . .
T Consensus 38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gv--Dis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~ 115 (250)
T 1o9g_A 38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIAS--DVDPAPLELAAKNLALLSPAGLTARELERREQ 115 (250)
T ss_dssp HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEE--ESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEE--ECCHHHHHHHHHHHHHhhhccccccchhhhhh
Confidence 34555555444333356799999999999999886 5688888 6678888777643 1 1
Q ss_pred ------------------ee-------------EEEcccccCCC-----CCCceeEEEEccchhhcCC------chhHHH
Q 043503 322 ------------------IS-------------MHISVSQRLPF-----FENTLDIVHSMHVLSNWIP------DSMLEF 359 (430)
Q Consensus 322 ------------------i~-------------~~~~d~~~lpf-----~d~sfDlV~~~~~L~~~~~------d~~l~~ 359 (430)
+. +..+|+..... ..++||+|+|+..+..... ......
T Consensus 116 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~ 195 (250)
T 1o9g_A 116 SERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAG 195 (250)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHH
T ss_pred hhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHH
Confidence 45 88888765321 3458999999876643221 134668
Q ss_pred HHHHHHHhccCCcEEEEee
Q 043503 360 TLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 360 ~L~ei~RvLrPGG~lvl~~ 378 (430)
++.++.++|+|||++++..
T Consensus 196 ~l~~~~~~LkpgG~l~~~~ 214 (250)
T 1o9g_A 196 LLRSLASALPAHAVIAVTD 214 (250)
T ss_dssp HHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEeC
Confidence 9999999999999999843
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=114.72 Aligned_cols=126 Identities=21% Similarity=0.204 Sum_probs=89.8
Q ss_pred ccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----------CCeeEEEcccccCCC--CCCceeEE
Q 043503 277 IRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----------GLISMHISVSQRLPF--FENTLDIV 342 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~lpf--~d~sfDlV 342 (430)
.++|||||||+|.++..+++. ..+|+++ |+++.+++.++++ ..+.++.+|+..++. ++++||+|
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~v--Did~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHGTVEHCDLV--DIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCTTCCEEEEE--ESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 356799999999999999987 4688888 6668888877654 238899999877653 47899999
Q ss_pred EEccchhhcCCchhH--HHHHHHHHHhccCCcEEEEeeccc-cCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 343 HSMHVLSNWIPDSML--EFTLYDIYRLLRPGGIFWLDRFFC-FGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 343 ~~~~~L~~~~~d~~l--~~~L~ei~RvLrPGG~lvl~~f~~-~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
++.... ++.+...+ ..++.++.|+|+|||++++..... ......+.+.+.+++.||..++..
T Consensus 174 i~d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~ 238 (304)
T 3bwc_A 174 IIDTTD-PAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYA 238 (304)
T ss_dssp EEECC----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred EECCCC-ccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEE
Confidence 996544 32222112 578999999999999999863221 111234668888999999876544
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-10 Score=109.99 Aligned_cols=124 Identities=15% Similarity=0.099 Sum_probs=88.4
Q ss_pred HHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc-----C----CeeEEEcccccCCC
Q 043503 267 QVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR-----G----LISMHISVSQRLPF 334 (430)
Q Consensus 267 ~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r-----g----~i~~~~~d~~~lpf 334 (430)
.++.........+|||+|||+|.++..+++. +.+|+++ |+++.+++.++++ | .+.++.+|+...++
T Consensus 90 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 90 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISY--EQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEE--CSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEE--eCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 3333333333345799999999999999986 6789988 7778888777654 4 48889999988888
Q ss_pred CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHH-cCCEEEE
Q 043503 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDR-IGFKKLR 403 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~-~Gfk~l~ 403 (430)
++++||+|++. .++ ...++.++.++|+|||++++..... +........+.+ .+|...+
T Consensus 168 ~~~~~D~v~~~------~~~--~~~~l~~~~~~L~pgG~l~~~~~~~---~~~~~~~~~l~~~~~f~~~~ 226 (280)
T 1i9g_A 168 PDGSVDRAVLD------MLA--PWEVLDAVSRLLVAGGVLMVYVATV---TQLSRIVEALRAKQCWTEPR 226 (280)
T ss_dssp CTTCEEEEEEE------SSC--GGGGHHHHHHHEEEEEEEEEEESSH---HHHHHHHHHHHHHSSBCCCE
T ss_pred CCCceeEEEEC------CcC--HHHHHHHHHHhCCCCCEEEEEeCCH---HHHHHHHHHHHhcCCcCCcE
Confidence 78899999993 222 3468999999999999999865331 122333444444 7776443
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.14 E-value=3e-10 Score=103.27 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=79.9
Q ss_pred cEEEEEcCCccHHHHHHHHc----CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC--------------------
Q 043503 278 RIGLDIGGGTGTFAARMRER----NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP-------------------- 333 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~----g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp-------------------- 333 (430)
.+|||+|||+|.++..++++ +.+|+++|++... ....+.++++|+...+
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~ 96 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDY 96 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-------CCTTCEEEECCTTTTSSCCC-----------CHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-------CCCCceEEEccccchhhhhhccccccccccchhhHH
Confidence 45799999999999999987 3689999665421 1123688889887766
Q ss_pred -----CCCCceeEEEEccchhhcCC----ch-----hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCC
Q 043503 334 -----FFENTLDIVHSMHVLSNWIP----DS-----MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGF 399 (430)
Q Consensus 334 -----f~d~sfDlV~~~~~L~~~~~----d~-----~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gf 399 (430)
+++++||+|++...+ ++.. +. ....++.++.++|||||.|++..+.. .....+...+.. .|
T Consensus 97 ~~~~~~~~~~fD~v~~~~~~-~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~---~~~~~l~~~l~~-~f 171 (201)
T 2plw_A 97 KLKEILQDKKIDIILSDAAV-PCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG---SQTNNLKTYLKG-MF 171 (201)
T ss_dssp HHHHHHTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS---TTHHHHHHHHHT-TE
T ss_pred HHHhhcCCCcccEEEeCCCc-CCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC---CCHHHHHHHHHH-HH
Confidence 567899999997655 3321 10 11247899999999999999865432 223445555554 47
Q ss_pred EEEEEE
Q 043503 400 KKLRWN 405 (430)
Q Consensus 400 k~l~~~ 405 (430)
..+...
T Consensus 172 ~~v~~~ 177 (201)
T 2plw_A 172 QLVHTT 177 (201)
T ss_dssp EEEEEC
T ss_pred heEEEE
Confidence 666543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-10 Score=108.78 Aligned_cols=123 Identities=12% Similarity=0.074 Sum_probs=87.0
Q ss_pred CccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-------C---CeeEEEcccccC-------CCCC
Q 043503 276 TIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-------G---LISMHISVSQRL-------PFFE 336 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-------g---~i~~~~~d~~~l-------pf~d 336 (430)
...+|||+|||+|.++..++++ +.+|+++ |+++.+++.|+++ + .+.++.+|+..+ ++++
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gv--Di~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLY--ERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEE--ESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEE--ECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 3356799999999999999988 4688888 6678888887754 2 278899998776 3567
Q ss_pred CceeEEEEccchhhc---------------CCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEE
Q 043503 337 NTLDIVHSMHVLSNW---------------IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKK 401 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~---------------~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~ 401 (430)
++||+|+++..+... .....+..++..+.++|+|||+|++.... .....+...+.+. |..
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~l~~~-~~~ 188 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP----QSVAEIIAACGSR-FGG 188 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG----GGHHHHHHHHTTT-EEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH----HHHHHHHHHHHhc-CCc
Confidence 899999997433211 11123678999999999999999985422 2334566666654 665
Q ss_pred EEEE
Q 043503 402 LRWN 405 (430)
Q Consensus 402 l~~~ 405 (430)
.+..
T Consensus 189 ~~i~ 192 (260)
T 2ozv_A 189 LEIT 192 (260)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5433
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=109.51 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=81.4
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C----CeeEEEcccccC-
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G----LISMHISVSQRL- 332 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g----~i~~~~~d~~~l- 332 (430)
+..+....+.....+|||||||+|..+..+++. +.+|+++ |+++.+++.|+++ | .+.++.+|+..+
T Consensus 45 l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l 122 (221)
T 3dr5_A 45 LTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCI--DPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVM 122 (221)
T ss_dssp HHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEE--CSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHG
T ss_pred HHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHH
Confidence 444444444432236799999999999999985 6789988 7778888777654 2 478888887553
Q ss_pred C-CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecccc
Q 043503 333 P-FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF 382 (430)
Q Consensus 333 p-f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~ 382 (430)
+ +++++||+|++.... . ....++.++.++|||||++++++.+..
T Consensus 123 ~~~~~~~fD~V~~d~~~----~--~~~~~l~~~~~~LkpGG~lv~dn~~~~ 167 (221)
T 3dr5_A 123 SRLANDSYQLVFGQVSP----M--DLKALVDAAWPLLRRGGALVLADALLD 167 (221)
T ss_dssp GGSCTTCEEEEEECCCT----T--THHHHHHHHHHHEEEEEEEEETTTTGG
T ss_pred HHhcCCCcCeEEEcCcH----H--HHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence 3 347899999985332 2 256789999999999999999876653
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-10 Score=115.71 Aligned_cols=95 Identities=15% Similarity=0.191 Sum_probs=75.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||||||+|.++..+++++. +|+++|+ ++ +.+.++++ | .+.++.+|.+.++++ ++||+|++...+.
T Consensus 52 ~~VLDiGcGtG~ls~~la~~g~~~V~~vD~--s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~ 127 (348)
T 2y1w_A 52 KIVLDVGCGSGILSFFAAQAGARKIYAVEA--ST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGY 127 (348)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEEC--ST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCBT
T ss_pred CEEEEcCCCccHHHHHHHhCCCCEEEEECC--HH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCchh
Confidence 4579999999999999999864 9999955 44 55555543 3 389999999888765 5899999987776
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
++..+ .....+.++.++|+|||.+++.
T Consensus 128 ~~~~~-~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 128 MLFNE-RMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp TBTTT-SHHHHHHHGGGGEEEEEEEESC
T ss_pred cCChH-HHHHHHHHHHhhcCCCeEEEEe
Confidence 65544 3667888999999999999854
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.13 E-value=3.8e-10 Score=111.60 Aligned_cols=142 Identities=15% Similarity=0.092 Sum_probs=98.1
Q ss_pred CCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcc
Q 043503 258 NGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL--ISMHISV 328 (430)
Q Consensus 258 ~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d 328 (430)
+......+..++...++. +|||+|||+|..+..+++. +.+|+++ |+++.+++.++++ |. +.++.+|
T Consensus 103 qd~~s~l~~~~l~~~~g~---~VLDlg~G~G~~t~~la~~~~~~~~v~av--D~s~~~l~~a~~~~~~~g~~~v~~~~~D 177 (315)
T 1ixk_A 103 QEASSMYPPVALDPKPGE---IVADMAAAPGGKTSYLAQLMRNDGVIYAF--DVDENRLRETRLNLSRLGVLNVILFHSS 177 (315)
T ss_dssp CCHHHHHHHHHHCCCTTC---EEEECCSSCSHHHHHHHHHTTTCSEEEEE--CSCHHHHHHHHHHHHHHTCCSEEEESSC
T ss_pred eCHHHHHHHHHhCCCCCC---EEEEeCCCCCHHHHHHHHHhCCCCEEEEE--cCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 333344445555554443 4699999999999999986 3688888 7778888777654 43 7888899
Q ss_pred cccCCCCCCceeEEEEccc------hhhcCCc--------------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHH
Q 043503 329 SQRLPFFENTLDIVHSMHV------LSNWIPD--------------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNE 388 (430)
Q Consensus 329 ~~~lpf~d~sfDlV~~~~~------L~~~~~d--------------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~ 388 (430)
+..++..+++||+|++... +.+ .++ .....+|.++.++|||||++++++......+-..
T Consensus 178 ~~~~~~~~~~fD~Il~d~Pcsg~g~~~~-~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~ 256 (315)
T 1ixk_A 178 SLHIGELNVEFDKILLDAPCTGSGTIHK-NPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEF 256 (315)
T ss_dssp GGGGGGGCCCEEEEEEECCTTSTTTCC---------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHH
T ss_pred hhhcccccccCCEEEEeCCCCCcccccC-ChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHH
Confidence 8887755678999998421 211 111 0125799999999999999999764333333345
Q ss_pred HHHHHHHHcCCEEEEEE
Q 043503 389 TYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 389 ~~~~ll~~~Gfk~l~~~ 405 (430)
.+..++++.||+.+.+.
T Consensus 257 ~v~~~l~~~~~~~~~~~ 273 (315)
T 1ixk_A 257 VIQWALDNFDVELLPLK 273 (315)
T ss_dssp HHHHHHHHSSEEEECCC
T ss_pred HHHHHHhcCCCEEecCC
Confidence 56778888998876543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.6e-10 Score=108.87 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=88.0
Q ss_pred ccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEcc
Q 043503 277 IRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMH 346 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~ 346 (430)
..+|||+|||+|.++..++++ +.+|+++ |+++.+++.++++ + .+.++.+|+... +++++||+|++.
T Consensus 113 ~~~VLDiG~G~G~~~~~la~~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~- 188 (277)
T 1o54_A 113 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAY--EKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFLD- 188 (277)
T ss_dssp TCEEEEECCTTSHHHHHHHHHTTTTCEEEEE--CCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEEC-
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCcEEEEE--ECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEEC-
Confidence 346799999999999999987 5788888 7778888877765 4 378888888765 667889999983
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.++ ...++.++.++|+|||.+++.... ......+.+.+.+.||..++..
T Consensus 189 -----~~~--~~~~l~~~~~~L~pgG~l~~~~~~---~~~~~~~~~~l~~~gf~~~~~~ 237 (277)
T 1o54_A 189 -----VPD--PWNYIDKCWEALKGGGRFATVCPT---TNQVQETLKKLQELPFIRIEVW 237 (277)
T ss_dssp -----CSC--GGGTHHHHHHHEEEEEEEEEEESS---HHHHHHHHHHHHHSSEEEEEEE
T ss_pred -----CcC--HHHHHHHHHHHcCCCCEEEEEeCC---HHHHHHHHHHHHHCCCceeEEE
Confidence 223 346899999999999999987532 1123456677888999877644
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.12 E-value=4e-10 Score=109.39 Aligned_cols=122 Identities=12% Similarity=0.099 Sum_probs=84.7
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCC-ChhHHHHHHhcC----------------CeeEEEcccccCC--C---
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNL-DGPFNSFIASRG----------------LISMHISVSQRLP--F--- 334 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~-s~~~le~a~~rg----------------~i~~~~~d~~~lp--f--- 334 (430)
.+|||+|||+|.++..++..+. +|+++ |+ ++.+++.++++- .+.+...+..... +
T Consensus 81 ~~vLDlG~G~G~~~~~~a~~~~~~v~~~--D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 158 (281)
T 3bzb_A 81 KTVCELGAGAGLVSIVAFLAGADQVVAT--DYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC 158 (281)
T ss_dssp CEEEETTCTTSHHHHHHHHTTCSEEEEE--ECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred CeEEEecccccHHHHHHHHcCCCEEEEE--eCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence 4579999999999999999876 89988 66 577777665431 3455544432211 1
Q ss_pred -CCCceeEEEEccchhhcCCchhHHHHHHHHHHhcc---C--CcEEEEeeccccCc---CcHHHHHHHHHHcC-CEEEEE
Q 043503 335 -FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLR---P--GGIFWLDRFFCFGS---QLNETYVPMLDRIG-FKKLRW 404 (430)
Q Consensus 335 -~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLr---P--GG~lvl~~f~~~~~---~~~~~~~~ll~~~G-fk~l~~ 404 (430)
++++||+|+++.++.+ .++ ...++..+.++|+ | ||.+++.. ..... .....+.+.+++.| |++.+.
T Consensus 159 ~~~~~fD~Ii~~dvl~~-~~~--~~~ll~~l~~~Lk~~~p~~gG~l~v~~-~~~~~~~~~~~~~~~~~l~~~G~f~v~~~ 234 (281)
T 3bzb_A 159 TGLQRFQVVLLADLLSF-HQA--HDALLRSVKMLLALPANDPTAVALVTF-THHRPHLAERDLAFFRLVNADGALIAEPW 234 (281)
T ss_dssp HSCSSBSEEEEESCCSC-GGG--HHHHHHHHHHHBCCTTTCTTCEEEEEE-CC--------CTHHHHHHHHSTTEEEEEE
T ss_pred ccCCCCCEEEEeCcccC-hHH--HHHHHHHHHHHhcccCCCCCCEEEEEE-EeeecccchhHHHHHHHHHhcCCEEEEEe
Confidence 3678999999888854 333 7889999999999 9 99877631 11111 11244666788999 998876
Q ss_pred E
Q 043503 405 N 405 (430)
Q Consensus 405 ~ 405 (430)
.
T Consensus 235 ~ 235 (281)
T 3bzb_A 235 L 235 (281)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-10 Score=108.77 Aligned_cols=98 Identities=11% Similarity=0.146 Sum_probs=77.1
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C---CeeEEEccccc-CC-CCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQR-LP-FFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~-lp-f~d~sfDlV~~~~ 346 (430)
.+|||+|||+|.++..+++. +.+|+++ |+++.+++.|+++ + .+.++.+|+.. ++ ..+++||+|++..
T Consensus 73 ~~vLDiG~G~G~~~~~la~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 73 KNILEIGTAIGYSSMQFASISDDIHVTTI--ERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp CEEEEECCSSSHHHHHHHTTCTTCEEEEE--ECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CEEEEEeCchhHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 45699999999999999984 7899988 6678888777654 3 48999999865 34 3478999999853
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
. ... ...++.++.++|||||++++++.+..+
T Consensus 151 ~----~~~--~~~~l~~~~~~LkpgG~lv~d~~~~~g 181 (232)
T 3ntv_A 151 A----KAQ--SKKFFEIYTPLLKHQGLVITDNVLYHG 181 (232)
T ss_dssp T----SSS--HHHHHHHHGGGEEEEEEEEEECTTGGG
T ss_pred c----HHH--HHHHHHHHHHhcCCCeEEEEeeCCcCc
Confidence 2 222 678999999999999999997766543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-10 Score=108.77 Aligned_cols=97 Identities=18% Similarity=0.149 Sum_probs=76.3
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C---CeeEEEccccc-CCCC--CCceeEEEE
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQR-LPFF--ENTLDIVHS 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~-lpf~--d~sfDlV~~ 344 (430)
++|||||||+|..+..+++. +.+|+++ |+++.+++.|+++ | .+.++.+|+.. ++.. .++||+|++
T Consensus 65 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~v--D~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 65 KRILEIGTLGGYSTIWMARELPADGQLLTL--EADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEEEE--ECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CEEEEecCCchHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 45699999999999999998 6799988 6678888877655 3 48899998765 4432 348999998
Q ss_pred ccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecccc
Q 043503 345 MHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF 382 (430)
Q Consensus 345 ~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~ 382 (430)
.... . ....++.++.++|||||++++++.+..
T Consensus 143 d~~~----~--~~~~~l~~~~~~LkpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 143 DADK----P--NNPHYLRWALRYSRPGTLIIGDNVVRD 174 (248)
T ss_dssp CSCG----G--GHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred CCch----H--HHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence 5432 2 256799999999999999999876654
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-10 Score=103.05 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=73.6
Q ss_pred cEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccC----CCCCCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRL----PFFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~l----pf~d~sfDlV~~~ 345 (430)
.+|||+|||+|.++..+++++ .+|+++ |+++.+++.++++ + .+.++.+|+... ++.+++||+|++.
T Consensus 46 ~~vLD~GcG~G~~~~~~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~ 123 (187)
T 2fhp_A 46 GMALDLYSGSGGLAIEAVSRGMDKSICI--EKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 123 (187)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEeCCccCHHHHHHHHcCCCEEEEE--ECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence 467999999999999998885 689988 6668888777654 3 378999987653 2236889999998
Q ss_pred cchhhcCCchhHHHHHHHH--HHhccCCcEEEEeecc
Q 043503 346 HVLSNWIPDSMLEFTLYDI--YRLLRPGGIFWLDRFF 380 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei--~RvLrPGG~lvl~~f~ 380 (430)
..+.. .. ....+..+ .++|+|||++++....
T Consensus 124 ~~~~~--~~--~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 124 PPYAK--QE--IVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp CCGGG--CC--HHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCCCc--hh--HHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 76531 22 45667777 8999999999987543
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-10 Score=112.07 Aligned_cols=104 Identities=14% Similarity=0.109 Sum_probs=77.5
Q ss_pred CCccEEEEEcCCc--cHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc------CCeeEEEcccccCC----CC--CC
Q 043503 275 GTIRIGLDIGGGT--GTFAARMRER---NVTIITTSLNLDGPFNSFIASR------GLISMHISVSQRLP----FF--EN 337 (430)
Q Consensus 275 ~~ir~VLDIGcGt--G~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r------g~i~~~~~d~~~lp----f~--d~ 337 (430)
..++.+||||||+ +.....++++ +.+|+++ |.++.|++.++++ +.+.++++|+..++ .+ .+
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~V--D~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~ 154 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYV--DNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRD 154 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEE--ECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHT
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEE--eCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccc
Confidence 4567889999997 3344444443 7899998 7789999888765 23889999987752 11 34
Q ss_pred cee-----EEEEccchhhcCCchh-HHHHHHHHHHhccCCcEEEEeeccc
Q 043503 338 TLD-----IVHSMHVLSNWIPDSM-LEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 338 sfD-----lV~~~~~L~~~~~d~~-l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
+|| .|+++.+| ||+++.. ...++.++.++|+|||+|+++++..
T Consensus 155 ~~D~~~p~av~~~avL-H~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~ 203 (277)
T 3giw_A 155 TLDLTRPVALTVIAIV-HFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA 203 (277)
T ss_dssp TCCTTSCCEEEEESCG-GGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred ccCcCCcchHHhhhhH-hcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 455 57777777 6787643 5789999999999999999998764
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.09 E-value=9.9e-11 Score=110.99 Aligned_cols=140 Identities=15% Similarity=0.167 Sum_probs=85.0
Q ss_pred HHHHHHccCCCC--CccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccC
Q 043503 264 GIDQVLSMKPLG--TIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRL 332 (430)
Q Consensus 264 ~id~lL~~~p~~--~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~l 332 (430)
.+..++...+.. ...+|||+|||+|.++..++++ +.+|+++ |+++.|++.|+++ +. +.++.+|+...
T Consensus 51 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 128 (254)
T 2h00_A 51 WVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLAT--EVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTL 128 (254)
T ss_dssp HHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEE--ESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCS
T ss_pred HHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEE--ECCHHHHHHHHHHHHHcCCCccEEEEEcchhhh
Confidence 455555544321 2346799999999999999887 7899998 6678888877654 33 88999987652
Q ss_pred ---CCC---CCceeEEEEccchhhcCCc------------hhHHHHHHHHHHhccCCcEEEEeeccc-------------
Q 043503 333 ---PFF---ENTLDIVHSMHVLSNWIPD------------SMLEFTLYDIYRLLRPGGIFWLDRFFC------------- 381 (430)
Q Consensus 333 ---pf~---d~sfDlV~~~~~L~~~~~d------------~~l~~~L~ei~RvLrPGG~lvl~~f~~------------- 381 (430)
+++ +++||+|+++..+.+...+ .....++.++.|+|||||.+.+.+.+.
T Consensus 129 ~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~ 208 (254)
T 2h00_A 129 LMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWY 208 (254)
T ss_dssp STTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCE
T ss_pred hhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEE
Confidence 344 3689999997554321100 001234566777777776654321110
Q ss_pred ---cC-cCcHHHHHHHHHHcCCEEEEEE
Q 043503 382 ---FG-SQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 382 ---~~-~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.+ ....+.+.+++++.||+.++..
T Consensus 209 ~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 236 (254)
T 2h00_A 209 SCMLGKKCSLAPLKEELRIQGVPKVTYT 236 (254)
T ss_dssp EEEESSTTSHHHHHHHHHHTTCSEEEEE
T ss_pred EECCCChhHHHHHHHHHHHcCCCceEEE
Confidence 01 1122567788999999876543
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-10 Score=105.57 Aligned_cols=97 Identities=14% Similarity=0.090 Sum_probs=75.3
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C--CeeEEEccccc-CCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G--LISMHISVSQR-LPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~-lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||+|||+|.++..++.++. +|+++ |+++.+++.++++ + .+.++++|+.. ++..+++||+|++...+
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~~~~V~~v--D~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~- 132 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRYAAGATLI--EMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF- 132 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEE--CSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS-
T ss_pred CeEEEeCCCcCHHHHHHHhcCCCEEEEE--ECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC-
Confidence 3569999999999999888864 88888 7788988887654 3 48899999766 56667899999997664
Q ss_pred hcCCchhHHHHHHHHHH--hccCCcEEEEeecc
Q 043503 350 NWIPDSMLEFTLYDIYR--LLRPGGIFWLDRFF 380 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~R--vLrPGG~lvl~~f~ 380 (430)
+ .. ....++..+.+ +|+|||.++++...
T Consensus 133 ~-~~--~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-RG--LLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp S-TT--THHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred C-CC--cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 2 22 25677888865 59999999987533
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-10 Score=106.12 Aligned_cols=107 Identities=20% Similarity=0.234 Sum_probs=79.5
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccC-C
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRL-P 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~l-p 333 (430)
+..++...++. +|||+|||+|.++..+++. +.+|+++ |+++.+++.++++ | .+.++++|+... +
T Consensus 56 l~~l~~~~~~~---~vLdiG~G~G~~~~~la~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 130 (225)
T 3tr6_A 56 LALLVKLMQAK---KVIDIGTFTGYSAIAMGLALPKDGTLITC--DVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLA 130 (225)
T ss_dssp HHHHHHHHTCS---EEEEECCTTSHHHHHHHTTCCTTCEEEEE--ESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred HHHHHHhhCCC---EEEEeCCcchHHHHHHHHhCCCCCEEEEE--eCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHH
Confidence 44444444443 4699999999999999987 6899988 6678888777654 3 388999887442 2
Q ss_pred -CCC----CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecccc
Q 043503 334 -FFE----NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF 382 (430)
Q Consensus 334 -f~d----~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~ 382 (430)
+.+ ++||+|++.... . ....++.++.++|||||++++++.+..
T Consensus 131 ~~~~~~~~~~fD~v~~~~~~----~--~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 131 ELIHAGQAWQYDLIYIDADK----A--NTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp HHHTTTCTTCEEEEEECSCG----G--GHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred HhhhccCCCCccEEEECCCH----H--HHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 111 789999974332 1 267899999999999999999877653
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.09 E-value=5.8e-10 Score=103.72 Aligned_cols=127 Identities=21% Similarity=0.342 Sum_probs=86.8
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC---eeEEEccccc-CC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQR-LP 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~-lp 333 (430)
+..++...++ ++|||+|||+|..+..+++. +.+|+++ |+++.+++.|+++ |. +.++.+|+.. ++
T Consensus 50 l~~l~~~~~~---~~vLdiG~G~G~~~~~la~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~ 124 (221)
T 3u81_A 50 MDAVIREYSP---SLVLELGAYCGYSAVRMARLLQPGARLLTM--EINPDCAAITQQMLNFAGLQDKVTILNGASQDLIP 124 (221)
T ss_dssp HHHHHHHHCC---SEEEEECCTTSHHHHHHHTTSCTTCEEEEE--ESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGG
T ss_pred HHHHHHhcCC---CEEEEECCCCCHHHHHHHHhCCCCCEEEEE--eCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHH
Confidence 4444444443 45699999999999999985 6899988 6678888877664 43 8899998744 34
Q ss_pred CCC-----CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHH-HcCCEEEE
Q 043503 334 FFE-----NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLD-RIGFKKLR 403 (430)
Q Consensus 334 f~d-----~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~-~~Gfk~l~ 403 (430)
... ++||+|++.....++. + ...++..+ ++|||||++++++....+. +.+.+.+. .-+|....
T Consensus 125 ~~~~~~~~~~fD~V~~d~~~~~~~-~--~~~~~~~~-~~LkpgG~lv~~~~~~~~~---~~~~~~l~~~~~~~~~~ 193 (221)
T 3u81_A 125 QLKKKYDVDTLDMVFLDHWKDRYL-P--DTLLLEKC-GLLRKGTVLLADNVIVPGT---PDFLAYVRGSSSFECTH 193 (221)
T ss_dssp GTTTTSCCCCCSEEEECSCGGGHH-H--HHHHHHHT-TCCCTTCEEEESCCCCCCC---HHHHHHHHHCTTEEEEE
T ss_pred HHHHhcCCCceEEEEEcCCcccch-H--HHHHHHhc-cccCCCeEEEEeCCCCcch---HHHHHHHhhCCCceEEE
Confidence 222 7899999976664432 1 33566677 9999999999988664332 33334443 44565443
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.6e-10 Score=110.69 Aligned_cols=119 Identities=20% Similarity=0.123 Sum_probs=88.3
Q ss_pred cEEEEEcCCccHHHHHHHHcC---CEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRERN---VTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g---~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
..|||+|||+|+++..++..+ .+++++ |+++.+++.|+++ | .+.+.++|+..++.+.+.||+|+++..+
T Consensus 205 ~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~--Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npPy 282 (354)
T 3tma_A 205 MRVLDPFTGSGTIALEAASTLGPTSPVYAG--DLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPPH 282 (354)
T ss_dssp CCEEESSCTTSHHHHHHHHHHCTTSCEEEE--ESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCCS
T ss_pred CEEEeCCCCcCHHHHHHHHhhCCCceEEEE--ECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECCCC
Confidence 456999999999999999874 889998 6668888777654 5 4899999999998777889999996554
Q ss_pred hhcCC-c----hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 349 SNWIP-D----SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 349 ~~~~~-d----~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
..... . .....++.++.++|+|||.+++...- .+.+..+.+ .||+..+..
T Consensus 283 g~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~------~~~~~~~~~-~g~~~~~~~ 337 (354)
T 3tma_A 283 GLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR------PALLKRALP-PGFALRHAR 337 (354)
T ss_dssp CC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC------HHHHHHHCC-TTEEEEEEE
T ss_pred cCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC------HHHHHHHhh-cCcEEEEEE
Confidence 22121 1 11367899999999999999986422 233444455 899877644
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.1e-10 Score=107.68 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=78.5
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhcCC-eeEEE-cccccCC---CCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASRGL-ISMHI-SVSQRLP---FFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~rg~-i~~~~-~d~~~lp---f~d~sfDlV~~~~~L~~~ 351 (430)
.+|||||||+|.++..++++|. +|+++ |+++.|++.+.++.. +.... .+...+. ++...||.+.+..++.+
T Consensus 39 ~~VLDiGcGtG~~t~~la~~g~~~V~gv--Dis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~- 115 (232)
T 3opn_A 39 KTCLDIGSSTGGFTDVMLQNGAKLVYAL--DVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS- 115 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEE--CSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC-
T ss_pred CEEEEEccCCCHHHHHHHhcCCCEEEEE--cCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh-
Confidence 4679999999999999999975 89998 777888887766532 22111 1111111 11112444444333322
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEee---cccc-------C----cC----cHHHHHHHHHHcCCEEEEEEecc
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDR---FFCF-------G----SQ----LNETYVPMLDRIGFKKLRWNVGM 408 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~---f~~~-------~----~~----~~~~~~~ll~~~Gfk~l~~~~~~ 408 (430)
+..++.++.|+|||||+|++.. |-.. + .. ..+.+..+++++||++..+...+
T Consensus 116 -----l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~p 185 (232)
T 3opn_A 116 -----LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSP 185 (232)
T ss_dssp -----GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECS
T ss_pred -----HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEcc
Confidence 2468999999999999998851 1100 0 00 22467889999999998877543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.08 E-value=9.3e-11 Score=103.27 Aligned_cols=96 Identities=14% Similarity=0.127 Sum_probs=72.5
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C-CeeEEEcccccC-C-CC--CCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G-LISMHISVSQRL-P-FF--ENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g-~i~~~~~d~~~l-p-f~--d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.++..+++++..|+++ |+++.+++.++++ + .+.++.+|+... + ++ +++||+|++...+
T Consensus 43 ~~vLD~GcG~G~~~~~l~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~ 120 (171)
T 1ws6_A 43 GRFLDPFAGSGAVGLEAASEGWEAVLV--EKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY 120 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTTCEEEEE--CCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT
T ss_pred CeEEEeCCCcCHHHHHHHHCCCeEEEE--eCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCC
Confidence 356999999999999999998888887 7778888877654 4 478888887653 2 11 3489999998666
Q ss_pred hhcCCchhHHHHHHHHH--HhccCCcEEEEeecc
Q 043503 349 SNWIPDSMLEFTLYDIY--RLLRPGGIFWLDRFF 380 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~--RvLrPGG~lvl~~f~ 380 (430)
+ .. ...++..+. ++|+|||.+++....
T Consensus 121 ~---~~--~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 121 A---MD--LAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp T---SC--TTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred c---hh--HHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 3 11 334556666 999999999997644
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.4e-10 Score=103.23 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=81.0
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCC-------C----CceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFF-------E----NTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~-------d----~sfDlV~~~~ 346 (430)
.+|||+|||+|.++..+++++.+|+++|++...+ ...+.++++|+...+.. . ++||+|++..
T Consensus 27 ~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~-------~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~ 99 (191)
T 3dou_A 27 DAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE-------IAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDA 99 (191)
T ss_dssp CEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC-------CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECC
T ss_pred CEEEEEeecCCHHHHHHHHcCCcEEEEecccccc-------CCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCC
Confidence 4579999999999999999999999997754221 12378899998775521 1 4899999953
Q ss_pred ch---hhcCC-----chhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEec
Q 043503 347 VL---SNWIP-----DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 347 ~L---~~~~~-----d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
.. ..+.. ......++..+.++|||||.|++..|-. .....+...++. .|..++...+
T Consensus 100 ~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~---~~~~~~~~~l~~-~F~~v~~~kP 164 (191)
T 3dou_A 100 MAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG---DMTNDFIAIWRK-NFSSYKISKP 164 (191)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS---THHHHHHHHHGG-GEEEEEEECC
T ss_pred CcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC---CCHHHHHHHHHH-hcCEEEEECC
Confidence 21 01000 1124578899999999999999876542 223445555543 5887775443
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-09 Score=99.73 Aligned_cols=120 Identities=12% Similarity=0.078 Sum_probs=82.3
Q ss_pred CccEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCC---CCCCceeEEEEc
Q 043503 276 TIRIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLP---FFENTLDIVHSM 345 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lp---f~d~sfDlV~~~ 345 (430)
...+|||+|||+|.++..++++ + .+|+++ |+++.+++.+.++ ..+.++.+|+.... ..+++||+|++.
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~v--D~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGI--EFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEE--ESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEE--ECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 3356799999999999999987 3 788888 6678766655433 45889999887632 224689999985
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC-------c-HHHHHHHHHHcCCEEEEEE
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-------L-NETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-------~-~~~~~~ll~~~Gfk~l~~~ 405 (430)
.. .++ ....++.++.++|||||++++. +...... . .+++..+ .+. |+.++..
T Consensus 151 ~~----~~~-~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~ 210 (227)
T 1g8a_A 151 VA----QPT-QAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERL 210 (227)
T ss_dssp CC----STT-HHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEE
T ss_pred CC----CHh-HHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEe
Confidence 33 222 2445699999999999999987 2211111 1 1344454 566 9987654
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-10 Score=107.02 Aligned_cols=106 Identities=20% Similarity=0.222 Sum_probs=81.4
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccC-CC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRL-PF 334 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~l-pf 334 (430)
+..++...++ .+|||+|||+|.++..+++. +.+|+++ |+++.+++.|+++ | .+.++.+|+... +.
T Consensus 46 l~~~~~~~~~---~~vLdiG~G~G~~~~~la~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 120 (233)
T 2gpy_A 46 LLHLLKMAAP---ARILEIGTAIGYSAIRMAQALPEATIVSI--ERDERRYEEAHKHVKALGLESRIELLFGDALQLGEK 120 (233)
T ss_dssp HHHHHHHHCC---SEEEEECCTTSHHHHHHHHHCTTCEEEEE--CCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHH
T ss_pred HHHHHhccCC---CEEEEecCCCcHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh
Confidence 4444444443 35699999999999999988 6889988 7778888887765 3 388888887663 43
Q ss_pred C--CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 335 F--ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 335 ~--d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
. +++||+|++..... + ...++.++.++|+|||.++++++..
T Consensus 121 ~~~~~~fD~I~~~~~~~----~--~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 121 LELYPLFDVLFIDAAKG----Q--YRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp HTTSCCEEEEEEEGGGS----C--HHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred cccCCCccEEEECCCHH----H--HHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 3 57899999965542 2 6789999999999999999986553
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.3e-10 Score=103.48 Aligned_cols=90 Identities=18% Similarity=0.114 Sum_probs=71.1
Q ss_pred cEEEEEcCCccHHHHHHHHcC---CEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRERN---VTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g---~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.++..+++.+ .+|+++ |+++.+++.++++ + .+.+..+|.......+++||+|++..++
T Consensus 79 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~ 156 (215)
T 2yxe_A 79 MKVLEIGTGCGYHAAVTAEIVGEDGLVVSI--ERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAG 156 (215)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTSEEEEE--ESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESSBB
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECCch
Confidence 456999999999999999884 789988 6678888877764 3 3788888874322236789999999888
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
++ .+ .++.++|||||.+++..
T Consensus 157 ~~-~~--------~~~~~~L~pgG~lv~~~ 177 (215)
T 2yxe_A 157 PK-IP--------EPLIRQLKDGGKLLMPV 177 (215)
T ss_dssp SS-CC--------HHHHHTEEEEEEEEEEE
T ss_pred HH-HH--------HHHHHHcCCCcEEEEEE
Confidence 54 43 38899999999999864
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=6e-10 Score=103.23 Aligned_cols=107 Identities=12% Similarity=0.074 Sum_probs=79.0
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccC-C
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRL-P 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~l-p 333 (430)
+..++...++ .+|||||||+|.++..+++. +.+|+++ |+++.+++.++++ | .+.++.+|+... +
T Consensus 50 l~~l~~~~~~---~~vLdiG~G~G~~~~~la~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 124 (223)
T 3duw_A 50 LQLLVQIQGA---RNILEIGTLGGYSTIWLARGLSSGGRVVTL--EASEKHADIARSNIERANLNDRVEVRTGLALDSLQ 124 (223)
T ss_dssp HHHHHHHHTC---SEEEEECCTTSHHHHHHHTTCCSSCEEEEE--ESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred HHHHHHhhCC---CEEEEecCCccHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 3444343343 34699999999999999998 6899988 6668888777654 4 388999987543 2
Q ss_pred -CC---CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecccc
Q 043503 334 -FF---ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF 382 (430)
Q Consensus 334 -f~---d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~ 382 (430)
+. .++||+|++..... ....++.++.++|||||++++++.+..
T Consensus 125 ~~~~~~~~~fD~v~~d~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 125 QIENEKYEPFDFIFIDADKQ------NNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp HHHHTTCCCCSEEEECSCGG------GHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred HHHhcCCCCcCEEEEcCCcH------HHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 11 26799999854421 256899999999999999999876654
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.4e-10 Score=111.68 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=72.5
Q ss_pred ccEEEEEcCCccHHHHHHHHcC---CEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccc
Q 043503 277 IRIGLDIGGGTGTFAARMRERN---VTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHV 347 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g---~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~ 347 (430)
..+|||||||+|.++..+++.+ .+|+++ |+++.+++.++++ |. +.+..+|....+..+++||+|++..+
T Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~~v~gv--D~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~ 153 (317)
T 1dl5_A 76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSV--EYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVG 153 (317)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEE--ESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred cCEEEEecCCchHHHHHHHHhcCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcCC
Confidence 3467999999999999999874 458988 6678888877765 43 88899998876556788999999888
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+++ ++ .++.++|||||.+++.
T Consensus 154 ~~~-~~--------~~~~~~LkpgG~lvi~ 174 (317)
T 1dl5_A 154 VDE-VP--------ETWFTQLKEGGRVIVP 174 (317)
T ss_dssp BSC-CC--------HHHHHHEEEEEEEEEE
T ss_pred HHH-HH--------HHHHHhcCCCcEEEEE
Confidence 854 43 4778999999999986
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.05 E-value=8.1e-10 Score=104.64 Aligned_cols=116 Identities=18% Similarity=0.207 Sum_probs=80.9
Q ss_pred cEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc------------C--CeeEEEccccc-CC--CCCCc
Q 043503 278 RIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR------------G--LISMHISVSQR-LP--FFENT 338 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r------------g--~i~~~~~d~~~-lp--f~d~s 338 (430)
.+|||||||+|.++..+++.+ ..|+++ |+++.+++.++++ + .+.++.+|+.. ++ +++++
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~~~v~gv--D~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPEDLILGM--EIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTTSEEEEE--ESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CEEEEEcCCCCHHHHHHHHhCCCCCEEEE--EcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 457999999999999999884 578988 6778888766542 3 38899999876 66 77889
Q ss_pred eeEEEEccchhhcCCc------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCC
Q 043503 339 LDIVHSMHVLSNWIPD------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGF 399 (430)
Q Consensus 339 fDlV~~~~~L~~~~~d------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gf 399 (430)
+|.|+....- .|... .....++.++.++|+|||.|++.. ......+...+.+...|.
T Consensus 129 ~d~v~~~~p~-p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t---d~~~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 129 LSKMFFCFPD-PHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT---DVKDLHEWMVKHLEEHPL 191 (246)
T ss_dssp EEEEEEESCC-CC------CSSCCCHHHHHHHHHHEEEEEEEEEEE---SCHHHHHHHHHHHHHSTT
T ss_pred cCEEEEECCC-cccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe---ccHHHHHHHHHHHHhCcC
Confidence 9999864221 11100 001479999999999999999843 122233444556666664
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-10 Score=107.85 Aligned_cols=94 Identities=15% Similarity=0.204 Sum_probs=73.3
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CCe-eEEEcccccCCCCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GLI-SMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~i-~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
.+|||+|||+|.++..++.. +++|+++ |+++.|++.++++ |.- .+...|.... .+.++||+|+...++++
T Consensus 51 ~~VLDlGCG~GplAl~l~~~~p~a~~~A~--Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~LHl 127 (200)
T 3fzg_A 51 SSILDFGCGFNPLALYQWNENEKIIYHAY--DIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKMLPV 127 (200)
T ss_dssp SEEEEETCTTHHHHHHHHCSSCCCEEEEE--CSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCHHH
T ss_pred CeEEEecCCCCHHHHHHHhcCCCCEEEEE--eCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHHHh
Confidence 45699999999999999887 7888988 7779999888765 442 4444555433 35788999999999965
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+++ .+..+.++.+.|+|||.|+--
T Consensus 128 -L~~--~~~al~~v~~~L~pggvfISf 151 (200)
T 3fzg_A 128 -LKQ--QDVNILDFLQLFHTQNFVISF 151 (200)
T ss_dssp -HHH--TTCCHHHHHHTCEEEEEEEEE
T ss_pred -hhh--hHHHHHHHHHHhCCCCEEEEe
Confidence 443 566777999999999988754
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=101.97 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=82.8
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
.+|||+|||+|.++..+++.+.+|+++ |+++.+++.++++ + .+.+..+|.....+++++||+|++.
T Consensus 93 ~~vldiG~G~G~~~~~l~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~----- 165 (248)
T 2yvl_A 93 KRVLEFGTGSGALLAVLSEVAGEVWTF--EAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD----- 165 (248)
T ss_dssp CEEEEECCTTSHHHHHHHHHSSEEEEE--CSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEEC-----
T ss_pred CEEEEeCCCccHHHHHHHHhCCEEEEE--ecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEEC-----
Confidence 457999999999999999888899988 7778888877764 3 3788888887644366789999983
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
.++ ...++.++.++|+|||.+++.... ......+...+.+. |..++
T Consensus 166 -~~~--~~~~l~~~~~~L~~gG~l~~~~~~---~~~~~~~~~~l~~~-f~~~~ 211 (248)
T 2yvl_A 166 -VRE--PWHYLEKVHKSLMEGAPVGFLLPT---ANQVIKLLESIENY-FGNLE 211 (248)
T ss_dssp -SSC--GGGGHHHHHHHBCTTCEEEEEESS---HHHHHHHHHHSTTT-EEEEE
T ss_pred -CcC--HHHHHHHHHHHcCCCCEEEEEeCC---HHHHHHHHHHHHhh-CCcce
Confidence 222 446799999999999999997533 12233455555555 66443
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.04 E-value=5.1e-10 Score=111.78 Aligned_cols=124 Identities=12% Similarity=0.008 Sum_probs=86.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C----CeeEEEcccccCCC----CCCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G----LISMHISVSQRLPF----FENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g----~i~~~~~d~~~lpf----~d~sfDlV~~~ 345 (430)
.+|||+|||+|.++..++..|.+|+++ |+++.+++.++++ + .+.++++|+..+.. .+++||+|++.
T Consensus 155 ~~VLDlgcGtG~~sl~la~~ga~V~~V--D~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~d 232 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAAGAEVTHV--DASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD 232 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEEE--CSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred CcEEEcccccCHHHHHHHHcCCEEEEE--ECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEEC
Confidence 457999999999999999998888888 7788888877654 3 27889898766431 15689999995
Q ss_pred cchhhcC-------CchhHHHHHHHHHHhccCCcEEEEeeccccCcC---cHHHHHHHHHHcCCEEEE
Q 043503 346 HVLSNWI-------PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ---LNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 346 ~~L~~~~-------~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~---~~~~~~~ll~~~Gfk~l~ 403 (430)
....... .......++.++.++|+|||+|++......... ..+.+.+.+.+.|+++..
T Consensus 233 PP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~~ 300 (332)
T 2igt_A 233 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVAS 300 (332)
T ss_dssp CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEEE
T ss_pred CccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 3311100 011367899999999999999887653332211 223344455578988763
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.1e-10 Score=103.65 Aligned_cols=95 Identities=11% Similarity=0.056 Sum_probs=74.3
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccC-CCCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRL-PFFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~l-pf~d~sfDlV~~~~ 346 (430)
++|||+|||+|..+..+++. +.+|+++ |+++.+++.++++ + .+.++.+|+... +..++ ||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISSRVVMI--DPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTCEEEEE--ESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 35699999999999999987 6789988 6678888777654 3 378999987553 54456 99999852
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
. .. ....++.++.++|||||++++++.+.
T Consensus 135 ~----~~--~~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 135 D----VF--NGADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp T----TS--CHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred C----hh--hhHHHHHHHHHhcCCCeEEEEECccc
Confidence 2 22 26789999999999999999976543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.8e-10 Score=117.36 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=79.6
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d 336 (430)
.+.++..+......+|||||||+|.++..+++.+ .+|+++| +++ +++.|+++ | .+.++.+|+..++++
T Consensus 147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD--~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~- 222 (480)
T 3b3j_A 147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVE--AST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP- 222 (480)
T ss_dssp HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEE--CHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-
T ss_pred HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEE--cHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-
Confidence 3444443322233567999999999999999885 5899985 455 66666543 4 389999999887765
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
++||+|++...+.++..+ .....+.++.++|+|||++++.
T Consensus 223 ~~fD~Ivs~~~~~~~~~e-~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 223 EQVDIIISEPMGYMLFNE-RMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp SCEEEEECCCCHHHHTCH-HHHHHHHHGGGGEEEEEEEESC
T ss_pred CCeEEEEEeCchHhcCcH-HHHHHHHHHHHhcCCCCEEEEE
Confidence 589999997776665444 3566777999999999999854
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.03 E-value=7.5e-10 Score=114.44 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=78.3
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-C-CEEEEEecCCChhHHHHH-------Hhc----C----CeeEEEc
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-N-VTIITTSLNLDGPFNSFI-------ASR----G----LISMHIS 327 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a-------~~r----g----~i~~~~~ 327 (430)
+..++..+......+|||+|||+|.++..+++. + .+|+|+ |+++.+++.| +++ | .+.++.+
T Consensus 231 v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GV--Dis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~g 308 (433)
T 1u2z_A 231 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGC--EIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 308 (433)
T ss_dssp HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEE--ECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEE--eCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEc
Confidence 444444443334456799999999999999986 5 478988 5566665555 433 4 3778776
Q ss_pred ccccC--CC--CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecccc
Q 043503 328 VSQRL--PF--FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF 382 (430)
Q Consensus 328 d~~~l--pf--~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~ 382 (430)
|.... ++ ..++||+|+++..+ +.+ .....|.++.++|||||.+++.+.+..
T Consensus 309 D~~~~~~~~~~~~~~FDvIvvn~~l--~~~--d~~~~L~el~r~LKpGG~lVi~d~f~p 363 (433)
T 1u2z_A 309 KSFVDNNRVAELIPQCDVILVNNFL--FDE--DLNKKVEKILQTAKVGCKIISLKSLRS 363 (433)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTT--CCH--HHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred CccccccccccccCCCCEEEEeCcc--ccc--cHHHHHHHHHHhCCCCeEEEEeeccCC
Confidence 54321 22 24789999997666 233 377889999999999999999865543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.2e-10 Score=110.52 Aligned_cols=96 Identities=13% Similarity=0.023 Sum_probs=68.9
Q ss_pred ccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcC--------CeeEE--EcccccCCCCCCceeEEEEcc
Q 043503 277 IRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRG--------LISMH--ISVSQRLPFFENTLDIVHSMH 346 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg--------~i~~~--~~d~~~lpf~d~sfDlV~~~~ 346 (430)
..+|||+|||+|.++..++++ .+|+++|++ + |...+.++. .+.++ .+|+..++ +++||+|+|..
T Consensus 83 g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s--~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~ 156 (276)
T 2wa2_A 83 KGTVVDLGCGRGSWSYYAASQ-PNVREVKAY--T-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDI 156 (276)
T ss_dssp CEEEEEESCTTCHHHHHHHTS-TTEEEEEEE--C-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECC
T ss_pred CCEEEEeccCCCHHHHHHHHc-CCEEEEECc--h-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECC
Confidence 346799999999999999998 789999664 3 322222221 36788 88888876 78999999965
Q ss_pred chhhcCCchh---H--HHHHHHHHHhccCCc--EEEEeecc
Q 043503 347 VLSNWIPDSM---L--EFTLYDIYRLLRPGG--IFWLDRFF 380 (430)
Q Consensus 347 ~L~~~~~d~~---l--~~~L~ei~RvLrPGG--~lvl~~f~ 380 (430)
. ++..... . ..+|.++.|+||||| .|++..|-
T Consensus 157 ~--~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 157 G--ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp C--CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred C--cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 5 2221110 1 137899999999999 99987654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.9e-10 Score=107.85 Aligned_cols=127 Identities=14% Similarity=0.103 Sum_probs=87.1
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc------CCEEEEEecCCChhHHHHHHhc-CCeeEEEcccccC---CC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER------NVTIITTSLNLDGPFNSFIASR-GLISMHISVSQRL---PF 334 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~------g~~Vv~vdiD~s~~~le~a~~r-g~i~~~~~d~~~l---pf 334 (430)
+..++...++ .+|||||||+|..+..+++. +.+|+++ |+++.+++.|+.. ..+.++++|+... ++
T Consensus 73 l~~~l~~~~~---~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gv--D~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~ 147 (236)
T 2bm8_A 73 YHDMLWELRP---RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGI--DRDLSRCQIPASDMENITLHQGDCSDLTTFEH 147 (236)
T ss_dssp HHHHHHHHCC---SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEE--ESCCTTCCCCGGGCTTEEEEECCSSCSGGGGG
T ss_pred HHHHHHhcCC---CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEE--eCChHHHHHHhccCCceEEEECcchhHHHHHh
Confidence 4444444443 35699999999999999886 6899998 5556666555432 4589999998774 54
Q ss_pred CC-CceeEEEEccchhhcCCchhHHHHHHHHHH-hccCCcEEEEeeccccC-cCcHHHHHHHHHHc--CCEEE
Q 043503 335 FE-NTLDIVHSMHVLSNWIPDSMLEFTLYDIYR-LLRPGGIFWLDRFFCFG-SQLNETYVPMLDRI--GFKKL 402 (430)
Q Consensus 335 ~d-~sfDlV~~~~~L~~~~~d~~l~~~L~ei~R-vLrPGG~lvl~~f~~~~-~~~~~~~~~ll~~~--Gfk~l 402 (430)
.+ .+||+|++... | .+ ...++.++.| +|||||++++.++.... ......+.++++.. +|...
T Consensus 148 ~~~~~fD~I~~d~~--~--~~--~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 148 LREMAHPLIFIDNA--H--AN--TFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp GSSSCSSEEEEESS--C--SS--HHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEE
T ss_pred hccCCCCEEEECCc--h--Hh--HHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEc
Confidence 34 47999998543 2 22 6789999998 99999999997542110 01123566677776 56654
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-10 Score=122.36 Aligned_cols=126 Identities=10% Similarity=0.082 Sum_probs=90.6
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHh----cCC--eeEEEcccccC--CCCCCceeEEEEccchhh
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIAS----RGL--ISMHISVSQRL--PFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~----rg~--i~~~~~d~~~l--pf~d~sfDlV~~~~~L~~ 350 (430)
+|||||||.|.++..|+++|++|+|+ |.++.+++.|+. +|. +.+.+++++.+ ++.+++||+|+|+.+++|
T Consensus 69 ~vLDvGCG~G~~~~~la~~ga~V~gi--D~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~eh 146 (569)
T 4azs_A 69 NVLDLGCAQGFFSLSLASKGATIVGI--DFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHH 146 (569)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHHH
T ss_pred eEEEECCCCcHHHHHHHhCCCEEEEE--CCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchhc
Confidence 56999999999999999999999998 778888877654 353 88999999887 467889999999999987
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC------cHHHHHHHHHHcCCEEEEEEec
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ------LNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~------~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
. ++......+..+.+.|+++|..++..+...+.. ...+|.++++..+|...--..+
T Consensus 147 v-~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~i~~~~~~~~~~~~g 208 (569)
T 4azs_A 147 I-VHLHGIDEVKRLLSRLADVTQAVILELAVKEEPFYWGVSQPDDPRELIEQCAFYRLIGEFD 208 (569)
T ss_dssp H-HHHHCHHHHHHHHHHHHHHSSEEEEECCCTTSSSGGGGGSCSSGGGGTTTSSEEEEEEEEC
T ss_pred C-CCHHHHHHHHHHHHHhccccceeeEEeccccccccccCCCCccHHHhcCHHHHHHHHHHcC
Confidence 4 332222345567888899888776554432211 1234666666666654433344
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.01 E-value=3.9e-09 Score=96.18 Aligned_cols=112 Identities=9% Similarity=0.020 Sum_probs=80.8
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhcC-CeeEEEcccccCCCCCCceeEEEEccchhhcCCch
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASRG-LISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~rg-~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
.+|||+|||+|.++..+++.+. +|+++ |+++.+++.++++- .+.++.+|+..++ ++||+|+++..++++ .+.
T Consensus 53 ~~vlD~gcG~G~~~~~l~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~-~~~ 126 (200)
T 1ne2_A 53 RSVIDAGTGNGILACGSYLLGAESVTAF--DIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSV-VKH 126 (200)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBSEEEEE--ESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC-------
T ss_pred CEEEEEeCCccHHHHHHHHcCCCEEEEE--ECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhc-cCc
Confidence 4679999999999999999865 68988 66789999888774 5789999988875 689999998888553 332
Q ss_pred hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
....++.++.+++ |+ +++.. . ......+.+.+...| +...
T Consensus 127 ~~~~~l~~~~~~~--g~-~~~~~---~-~~~~~~~~~~~~~~g-~~~~ 166 (200)
T 1ne2_A 127 SDRAFIDKAFETS--MW-IYSIG---N-AKARDFLRREFSARG-DVFR 166 (200)
T ss_dssp -CHHHHHHHHHHE--EE-EEEEE---E-GGGHHHHHHHHHHHE-EEEE
T ss_pred hhHHHHHHHHHhc--Cc-EEEEE---c-CchHHHHHHHHHHCC-CEEE
Confidence 3357899999998 55 44432 1 123455677788888 5443
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.2e-10 Score=99.82 Aligned_cols=117 Identities=15% Similarity=0.071 Sum_probs=76.7
Q ss_pred cEEEEEcCCccHHHHHHHHc-C----------CEEEEEecCCChhHHHHHHhcCCeeEE-EcccccCC--------CCCC
Q 043503 278 RIGLDIGGGTGTFAARMRER-N----------VTIITTSLNLDGPFNSFIASRGLISMH-ISVSQRLP--------FFEN 337 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g----------~~Vv~vdiD~s~~~le~a~~rg~i~~~-~~d~~~lp--------f~d~ 337 (430)
.+|||+|||+|.++..++++ + .+|+++|++... ....+.++ .+|....+ ++++
T Consensus 24 ~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (196)
T 2nyu_A 24 LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-------PLEGATFLCPADVTDPRTSQRILEVLPGR 96 (196)
T ss_dssp CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-------CCTTCEEECSCCTTSHHHHHHHHHHSGGG
T ss_pred CEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-------cCCCCeEEEeccCCCHHHHHHHHHhcCCC
Confidence 45799999999999999987 4 789999654311 01236777 77765533 3456
Q ss_pred ceeEEEEccchh---hcCCch-----hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 338 TLDIVHSMHVLS---NWIPDS-----MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 338 sfDlV~~~~~L~---~~~~d~-----~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+||+|++....+ ++..+. ....++.++.++|||||.|++..+.. .....+...+... |..+.+.
T Consensus 97 ~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~~l~~~-f~~v~~~ 168 (196)
T 2nyu_A 97 RADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG---SQSRRLQRRLTEE-FQNVRII 168 (196)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS---GGGHHHHHHHHHH-EEEEEEE
T ss_pred CCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC---ccHHHHHHHHHHH-hcceEEE
Confidence 899999964331 221110 11478999999999999999976542 2234455555543 6655543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=101.36 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=71.6
Q ss_pred cEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChhHHHHHHhc-----------CCeeEEEcccccCCCCCCceeEEE
Q 043503 278 RIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGPFNSFIASR-----------GLISMHISVSQRLPFFENTLDIVH 343 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~~le~a~~r-----------g~i~~~~~d~~~lpf~d~sfDlV~ 343 (430)
.+|||+|||+|.++..+++. + .+|+++ |+++.+++.++++ ..+.++.+|....+..+++||+|+
T Consensus 79 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 156 (226)
T 1i1n_A 79 AKALDVGSGSGILTACFARMVGCTGKVIGI--DHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIH 156 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTCEEEEE--ESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHHHhCCCcEEEEE--eCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEE
Confidence 45799999999999999987 4 689988 6678888777543 248888999876665677899999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+...+.+ ++.++.++|||||++++..
T Consensus 157 ~~~~~~~---------~~~~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 157 VGAAAPV---------VPQALIDQLKPGGRLILPV 182 (226)
T ss_dssp ECSBBSS---------CCHHHHHTEEEEEEEEEEE
T ss_pred ECCchHH---------HHHHHHHhcCCCcEEEEEE
Confidence 9776643 2358899999999999975
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.6e-09 Score=98.80 Aligned_cols=129 Identities=12% Similarity=0.069 Sum_probs=96.4
Q ss_pred HHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCCC
Q 043503 264 GIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLPF 334 (430)
Q Consensus 264 ~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lpf 334 (430)
.+..+....+.+ .+|||||||+|.+++.++..+ .+|+++ |+++.+++.|+++ |. +.+..+|......
T Consensus 11 RL~~i~~~v~~g--~~VlDIGtGsG~l~i~la~~~~~~~V~Av--Di~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~ 86 (230)
T 3lec_A 11 RLQKVANYVPKG--ARLLDVGSDHAYLPIFLLQMGYCDFAIAG--EVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFE 86 (230)
T ss_dssp HHHHHHTTSCTT--EEEEEETCSTTHHHHHHHHTTCEEEEEEE--ESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC
T ss_pred HHHHHHHhCCCC--CEEEEECCchHHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccc
Confidence 355555556544 457999999999999999985 368888 5567777776654 43 8999999766554
Q ss_pred CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEe
Q 043503 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
+++.||+|+..+.... .+..++.+..+.|+++|+|++.... ..+.+.+.+.+.||.+++...
T Consensus 87 ~~~~~D~IviaGmGg~-----lI~~IL~~~~~~l~~~~~lIlqp~~-----~~~~lr~~L~~~Gf~i~~E~l 148 (230)
T 3lec_A 87 EADNIDTITICGMGGR-----LIADILNNDIDKLQHVKTLVLQPNN-----REDDLRKWLAANDFEIVAEDI 148 (230)
T ss_dssp GGGCCCEEEEEEECHH-----HHHHHHHHTGGGGTTCCEEEEEESS-----CHHHHHHHHHHTTEEEEEEEE
T ss_pred cccccCEEEEeCCchH-----HHHHHHHHHHHHhCcCCEEEEECCC-----ChHHHHHHHHHCCCEEEEEEE
Confidence 4457999886554432 3678899999999999999997532 256788889999999887653
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.2e-10 Score=115.92 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=78.3
Q ss_pred HHHHHccCCCCCccEEEEEcCC------ccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGG------TGTFAARMRER---NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFF 335 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcG------tG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~ 335 (430)
.++++..+... ..+||||||| +|..+..++++ +.+|+++|++ +.|. .....+.++++|+..+++.
T Consensus 206 Ye~lL~~l~~~-~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiS--p~m~---~~~~rI~fv~GDa~dlpf~ 279 (419)
T 3sso_A 206 YDRHFRDYRNQ-QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIM--DKSH---VDELRIRTIQGDQNDAEFL 279 (419)
T ss_dssp HHHHHGGGTTS-CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESS--CCGG---GCBTTEEEEECCTTCHHHH
T ss_pred HHHHHHhhcCC-CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECC--HHHh---hcCCCcEEEEecccccchh
Confidence 45555544322 3567999999 77777777764 6899999554 5552 2334589999999998877
Q ss_pred ------CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 336 ------ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 336 ------d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
+++||+|++.. . |+.. ....+|.++.|+|||||+|++.+..
T Consensus 280 ~~l~~~d~sFDlVisdg-s-H~~~--d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 280 DRIARRYGPFDIVIDDG-S-HINA--HVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp HHHHHHHCCEEEEEECS-C-CCHH--HHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred hhhhcccCCccEEEECC-c-ccch--hHHHHHHHHHHhcCCCeEEEEEecc
Confidence 78999999953 3 3333 3778999999999999999998765
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.9e-09 Score=108.67 Aligned_cols=140 Identities=19% Similarity=0.178 Sum_probs=96.2
Q ss_pred CCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--C-CEEEEEecCCChhHHHHHHhc----CC--eeEEEcc
Q 043503 258 NGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--N-VTIITTSLNLDGPFNSFIASR----GL--ISMHISV 328 (430)
Q Consensus 258 ~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g-~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d 328 (430)
+......+..++...++. +|||+|||+|..+..+++. + .+|+++ |+++.+++.++++ |. +.++.+|
T Consensus 244 qd~~s~l~~~~l~~~~g~---~VLDlgaG~G~~t~~la~~~~~~~~v~a~--D~s~~~l~~~~~~~~~~g~~~v~~~~~D 318 (450)
T 2yxl_A 244 QEEASAVASIVLDPKPGE---TVVDLAAAPGGKTTHLAELMKNKGKIYAF--DVDKMRMKRLKDFVKRMGIKIVKPLVKD 318 (450)
T ss_dssp CCHHHHHHHHHHCCCTTC---EEEESSCTTCHHHHHHHHHTTTCSEEEEE--CSCHHHHHHHHHHHHHTTCCSEEEECSC
T ss_pred cCchhHHHHHhcCCCCcC---EEEEeCCCccHHHHHHHHHcCCCCEEEEE--cCCHHHHHHHHHHHHHcCCCcEEEEEcC
Confidence 333334445555554443 4699999999999999986 3 688988 7778887776654 54 7888889
Q ss_pred cccCC--CCCCceeEEEEc------cchhhcCCch-------h-------HHHHHHHHHHhccCCcEEEEeeccccCcCc
Q 043503 329 SQRLP--FFENTLDIVHSM------HVLSNWIPDS-------M-------LEFTLYDIYRLLRPGGIFWLDRFFCFGSQL 386 (430)
Q Consensus 329 ~~~lp--f~d~sfDlV~~~------~~L~~~~~d~-------~-------l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~ 386 (430)
+..++ +++++||+|++. .++.+ .++. . ...++.++.++|||||.+++++......+-
T Consensus 319 ~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~-~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~en 397 (450)
T 2yxl_A 319 ARKAPEIIGEEVADKVLLDAPCTSSGTIGK-NPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEEN 397 (450)
T ss_dssp TTCCSSSSCSSCEEEEEEECCCCCGGGTTT-STTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGT
T ss_pred hhhcchhhccCCCCEEEEcCCCCCCeeecc-ChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhH
Confidence 88776 555789999972 22211 2221 1 157899999999999999988754443333
Q ss_pred HHHHHHHHHHc-CCEEEE
Q 043503 387 NETYVPMLDRI-GFKKLR 403 (430)
Q Consensus 387 ~~~~~~ll~~~-Gfk~l~ 403 (430)
.+.+...+++. ||+.+.
T Consensus 398 e~~v~~~l~~~~~~~~~~ 415 (450)
T 2yxl_A 398 EKNIRWFLNVHPEFKLVP 415 (450)
T ss_dssp HHHHHHHHHHCSSCEECC
T ss_pred HHHHHHHHHhCCCCEEee
Confidence 45566777775 788654
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.7e-10 Score=108.09 Aligned_cols=95 Identities=14% Similarity=0.023 Sum_probs=68.0
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc-------C-CeeEE--EcccccCCCCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR-------G-LISMH--ISVSQRLPFFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r-------g-~i~~~--~~d~~~lpf~d~sfDlV~~~~~ 347 (430)
.+|||+|||+|.++..++++ .+|+++|++. |...+.++ + .+.++ ++|+..++ +++||+|+|...
T Consensus 76 ~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~---m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~~ 149 (265)
T 2oxt_A 76 GRVVDLGCGRGGWSYYAASR-PHVMDVRAYT---LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDVG 149 (265)
T ss_dssp EEEEEESCTTSHHHHHHHTS-TTEEEEEEEC---CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECCC
T ss_pred CEEEEeCcCCCHHHHHHHHc-CcEEEEECch---hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeCc
Confidence 45799999999999999998 7899996643 32212111 1 36777 78888776 789999999655
Q ss_pred hhhcCCchh---H--HHHHHHHHHhccCCc--EEEEeecc
Q 043503 348 LSNWIPDSM---L--EFTLYDIYRLLRPGG--IFWLDRFF 380 (430)
Q Consensus 348 L~~~~~d~~---l--~~~L~ei~RvLrPGG--~lvl~~f~ 380 (430)
++..... . ..+|.++.++|+||| .|++..|-
T Consensus 150 --~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 150 --ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp --CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred --ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 2222110 1 137899999999999 99997654
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.7e-09 Score=103.14 Aligned_cols=138 Identities=13% Similarity=-0.004 Sum_probs=92.8
Q ss_pred hHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--C-CEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccC
Q 043503 262 DYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--N-VTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRL 332 (430)
Q Consensus 262 ~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g-~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~l 332 (430)
...+..++...++. +|||+|||+|.++..+++. + .+|+++ |+++.+++.++++ |. +.++.+|+..+
T Consensus 72 s~l~~~~l~~~~g~---~VLDlgaG~G~~t~~la~~~~~~~~v~av--D~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~ 146 (274)
T 3ajd_A 72 SMIPPIVLNPREDD---FILDMCAAPGGKTTHLAQLMKNKGTIVAV--EISKTRTKALKSNINRMGVLNTIIINADMRKY 146 (274)
T ss_dssp GGHHHHHHCCCTTC---EEEETTCTTCHHHHHHHHHTTTCSEEEEE--ESCHHHHHHHHHHHHHTTCCSEEEEESCHHHH
T ss_pred HHHHHHHhCCCCcC---EEEEeCCCccHHHHHHHHHcCCCCEEEEE--CCCHHHHHHHHHHHHHhCCCcEEEEeCChHhc
Confidence 33344555554443 4699999999999999984 4 789988 6667777766654 43 78888998776
Q ss_pred CC----CCCceeEEEEccchhh---------cCC------chhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHH
Q 043503 333 PF----FENTLDIVHSMHVLSN---------WIP------DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPM 393 (430)
Q Consensus 333 pf----~d~sfDlV~~~~~L~~---------~~~------d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~l 393 (430)
+. .+++||+|++...... |.+ ......++.++.++|||||.+++++......+-.+.+..+
T Consensus 147 ~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~ 226 (274)
T 3ajd_A 147 KDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYI 226 (274)
T ss_dssp HHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHH
T ss_pred chhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHH
Confidence 54 2678999998521100 000 0125789999999999999999976443333334556666
Q ss_pred HHH-cCCEEEEE
Q 043503 394 LDR-IGFKKLRW 404 (430)
Q Consensus 394 l~~-~Gfk~l~~ 404 (430)
+++ .+|+.+..
T Consensus 227 l~~~~~~~~~~~ 238 (274)
T 3ajd_A 227 LQKRNDVELIII 238 (274)
T ss_dssp HHHCSSEEEECC
T ss_pred HHhCCCcEEecC
Confidence 654 45766543
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.6e-09 Score=103.36 Aligned_cols=94 Identities=12% Similarity=0.174 Sum_probs=74.9
Q ss_pred cEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||+|||+|.++..+++++ .+|+++ |+++.+++.++++ +. +.++.+|+..++. +++||+|++....
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~~~~V~~v--D~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~- 196 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSKPKLVYAI--EKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH- 196 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCCSEEEEE--ECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS-
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc-
Confidence 457999999999999999983 489988 6678887776653 43 7789999887743 6789999996443
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
....++.++.++|+|||.++++.+..
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 14568999999999999999987654
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-08 Score=93.01 Aligned_cols=117 Identities=12% Similarity=0.125 Sum_probs=85.1
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C-CeeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G-LISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g-~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+|||+|||+|.++..+++.+. +|+++ |+++.+++.++++ + .+.++.+|+..++ ++||+|+++..++.
T Consensus 51 ~~vlD~g~G~G~~~~~l~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~- 124 (207)
T 1wy7_A 51 KVVADLGAGTGVLSYGALLLGAKEVICV--EVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGS- 124 (207)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSS-
T ss_pred CEEEEeeCCCCHHHHHHHHcCCCEEEEE--ECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCcc-
Confidence 4679999999999999999864 68888 6678888888765 3 4889999988865 48999999877643
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
........++.++.+++ ||.+++ .. ......+.+...+.+.||+.....
T Consensus 125 ~~~~~~~~~l~~~~~~l--~~~~~~-~~--~~~~~~~~~~~~l~~~g~~~~~~~ 173 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS--DVVYSI-HL--AKPEVRRFIEKFSWEHGFVVTHRL 173 (207)
T ss_dssp SSTTTTHHHHHHHHHHC--SEEEEE-EE--CCHHHHHHHHHHHHHTTEEEEEEE
T ss_pred ccCCchHHHHHHHHHhc--CcEEEE-Ee--CCcCCHHHHHHHHHHCCCeEEEEE
Confidence 33223567899999998 554433 21 122234556778889999866543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.97 E-value=8.8e-09 Score=98.76 Aligned_cols=129 Identities=10% Similarity=-0.030 Sum_probs=95.2
Q ss_pred HHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCC
Q 043503 263 YGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLP 333 (430)
Q Consensus 263 ~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lp 333 (430)
..+..+....+.+ .+|||||||+|.+++.+++.+ .+|+++ |+++.+++.|+++ |. +.+..+|.....
T Consensus 10 ~RL~~i~~~v~~g--~~VlDIGtGsG~l~i~la~~~~~~~V~av--Di~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~ 85 (244)
T 3gnl_A 10 KRLEKVASYITKN--ERIADIGSDHAYLPCFAVKNQTASFAIAG--EVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI 85 (244)
T ss_dssp HHHHHHHTTCCSS--EEEEEETCSTTHHHHHHHHTTSEEEEEEE--ESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC
T ss_pred HHHHHHHHhCCCC--CEEEEECCccHHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc
Confidence 3355555556544 457999999999999999985 368888 5567777777655 54 889999876654
Q ss_pred CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 334 FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 334 f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.++.+||+|+..+.... .+..++.+..+.|+++|+|++.... ..+.+.+.+.+.||.+++..
T Consensus 86 ~~~~~~D~IviagmGg~-----lI~~IL~~~~~~L~~~~~lIlq~~~-----~~~~lr~~L~~~Gf~i~~E~ 147 (244)
T 3gnl_A 86 EKKDAIDTIVIAGMGGT-----LIRTILEEGAAKLAGVTKLILQPNI-----AAWQLREWSEQNNWLITSEA 147 (244)
T ss_dssp CGGGCCCEEEEEEECHH-----HHHHHHHHTGGGGTTCCEEEEEESS-----CHHHHHHHHHHHTEEEEEEE
T ss_pred CccccccEEEEeCCchH-----HHHHHHHHHHHHhCCCCEEEEEcCC-----ChHHHHHHHHHCCCEEEEEE
Confidence 44446999887544422 3677899999999999999997522 35678888999999976644
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.1e-09 Score=109.28 Aligned_cols=94 Identities=18% Similarity=0.259 Sum_probs=71.6
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHH----HhcCC---eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFI----ASRGL---ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a----~~rg~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
++|||||||+|.++..+++.|+ +|+++|.+ + |.+.| +.+|. |.++.++.+.+.++ ++||+|++-..-.
T Consensus 85 k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s--~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~ 160 (376)
T 4hc4_A 85 KTVLDVGAGTGILSIFCAQAGARRVYAVEAS--A-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGY 160 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEECS--T-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBT
T ss_pred CEEEEeCCCccHHHHHHHHhCCCEEEEEeCh--H-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccc
Confidence 4579999999999998888875 79999654 3 44444 44454 89999999988876 5799999943322
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lv 375 (430)
....+..+..++....|.|+|||.++
T Consensus 161 ~l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 161 GLLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp TBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred cccccchhhhHHHHHHhhCCCCceEC
Confidence 22334458889999999999999986
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=102.92 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=68.8
Q ss_pred EEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCC-ceeEEEEccchhh
Q 043503 279 IGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFEN-TLDIVHSMHVLSN 350 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~-sfDlV~~~~~L~~ 350 (430)
+|||+|||+|.++..+++.+ .+|+++ |+++.+++.++++ | .+.+..+|. ..++++. .||+|++..++.+
T Consensus 94 ~vLdiG~G~G~~~~~la~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~~~~~ 170 (235)
T 1jg1_A 94 NILEVGTGSGWNAALISEIVKTDVYTI--ERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVTAGAPK 170 (235)
T ss_dssp CEEEECCTTSHHHHHHHHHHCSCEEEE--ESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEECSBBSS
T ss_pred EEEEEeCCcCHHHHHHHHHhCCEEEEE--eCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEECCcHHH
Confidence 45999999999999999985 888988 6678888777664 3 378888887 3455444 5999999887744
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
++ .++.++|+|||.+++..
T Consensus 171 -~~--------~~~~~~L~pgG~lvi~~ 189 (235)
T 1jg1_A 171 -IP--------EPLIEQLKIGGKLIIPV 189 (235)
T ss_dssp -CC--------HHHHHTEEEEEEEEEEE
T ss_pred -HH--------HHHHHhcCCCcEEEEEE
Confidence 32 27889999999999864
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.6e-09 Score=106.11 Aligned_cols=99 Identities=15% Similarity=0.182 Sum_probs=75.6
Q ss_pred EEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc------CCeeEEEcccccC--CCCCCceeEEEEccch
Q 043503 279 IGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR------GLISMHISVSQRL--PFFENTLDIVHSMHVL 348 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r------g~i~~~~~d~~~l--pf~d~sfDlV~~~~~L 348 (430)
+|||||||+|.++..++++ +.+|+++ |+++.+++.++++ ..+.++++|+..+ .+++++||+|++....
T Consensus 92 rVLdIG~G~G~la~~la~~~p~~~v~~V--Eidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 92 RITHLGGGACTMARYFADVYPQSRNTVV--ELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp EEEEESCGGGHHHHHHHHHSTTCEEEEE--ESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred EEEEEECCcCHHHHHHHHHCCCcEEEEE--ECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 6799999999999999984 7788888 6678999999876 2388999997654 2457899999995333
Q ss_pred hhcCCch-hHHHHHHHHHHhccCCcEEEEeec
Q 043503 349 SNWIPDS-MLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 349 ~~~~~d~-~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
....+.. ....++.++.++|+|||+|++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 2112211 126799999999999999988653
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.7e-10 Score=108.38 Aligned_cols=98 Identities=18% Similarity=0.206 Sum_probs=72.7
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHH----HHHHhcC---CeeEEEcccccC-CCC-----CCceeE
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFN----SFIASRG---LISMHISVSQRL-PFF-----ENTLDI 341 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~l----e~a~~rg---~i~~~~~d~~~l-pf~-----d~sfDl 341 (430)
++|||||||+|..+..+++. +.+|+++|++ +.++ +.+...| .+.++.+|+... +.. +++||+
T Consensus 62 ~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~--~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 62 KKVLELGTFTGYSALAMSLALPDDGQVITCDIN--EGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp SEEEEEESCCSHHHHHHHHTSCTTCEEEEEECC--CSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 45699999999999999985 6799999654 4444 3333334 489999987553 321 578999
Q ss_pred EEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
|++.... . ....++.++.++|||||++++++.+..+
T Consensus 140 V~~d~~~----~--~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 140 IFIDADK----T--NYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEESCG----G--GHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred EEEcCCh----H--HhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 9985432 1 2667899999999999999998766543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.4e-09 Score=106.24 Aligned_cols=120 Identities=12% Similarity=-0.008 Sum_probs=87.7
Q ss_pred cEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----C--CeeEEEccccc-CCC-CCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----G--LISMHISVSQR-LPF-FENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~-lpf-~d~sfDlV~~~~~ 347 (430)
.+|||+| |+|.++..++..+ .+|+++ |+++.+++.|+++ | .+.++.+|+.. +|. .+++||+|+++..
T Consensus 174 ~~VLDlG-G~G~~~~~la~~~~~~~v~~v--Di~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 174 KDIFVLG-DDDLTSIALMLSGLPKRIAVL--DIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp CEEEEES-CTTCHHHHHHHHTCCSEEEEE--CSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CEEEEEC-CCCHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 5679999 9999999998875 588888 7778888887765 5 38899999887 764 4678999999765
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEE-EEeeccccCcCc--HHHHHHHHH-HcCCEEEEEE
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIF-WLDRFFCFGSQL--NETYVPMLD-RIGFKKLRWN 405 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~l-vl~~f~~~~~~~--~~~~~~ll~-~~Gfk~l~~~ 405 (430)
+... ....++.++.++|+|||.+ +++. ....... ...+.+++. +.||+.....
T Consensus 251 ~~~~----~~~~~l~~~~~~LkpgG~~~~~~~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 307 (373)
T 2qm3_A 251 ETLE----AIRAFVGRGIATLKGPRCAGYFGI-TRRESSLDKWREIQKLLLNEFNVVITDII 307 (373)
T ss_dssp SSHH----HHHHHHHHHHHTBCSTTCEEEEEE-CTTTCCHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred CchH----HHHHHHHHHHHHcccCCeEEEEEE-ecCcCCHHHHHHHHHHHHHhcCcchhhhh
Confidence 5322 1578999999999999944 4442 2111111 145667777 8999875543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-09 Score=102.66 Aligned_cols=106 Identities=17% Similarity=0.244 Sum_probs=78.1
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC---eeEEEccccc-CC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQR-LP 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~-lp 333 (430)
+..++...++ .+|||||||+|.++..+++. +.+|+++ |+++.+++.++++ |. +.++.+|+.. ++
T Consensus 52 l~~l~~~~~~---~~VLdiG~G~G~~~~~la~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 126 (239)
T 2hnk_A 52 LNILTKISGA---KRIIEIGTFTGYSSLCFASALPEDGKILCC--DVSEEWTNVARKYWKENGLENKIFLKLGSALETLQ 126 (239)
T ss_dssp HHHHHHHHTC---SEEEEECCTTCHHHHHHHHHSCTTCEEEEE--ESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred HHHHHHhhCc---CEEEEEeCCCCHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHH
Confidence 3444443343 34699999999999999987 5789988 6668888777655 43 7888887644 22
Q ss_pred --------------CCC--CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 334 --------------FFE--NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 334 --------------f~d--~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
|++ ++||+|++..... ....++.++.++|+|||++++.....
T Consensus 127 ~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 127 VLIDSKSAPSWASDFAFGPSSIDLFFLDADKE------NYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp HHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG------GHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred HHHhhcccccccccccCCCCCcCEEEEeCCHH------HHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 223 7899999964432 25688999999999999999987543
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-09 Score=104.17 Aligned_cols=106 Identities=12% Similarity=0.109 Sum_probs=78.3
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccC-C
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRL-P 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~l-p 333 (430)
+..++...+. ++|||||||+|..+..+++. +.+|+++ |+++.+++.|+++ |. +.++.+|+... +
T Consensus 71 l~~l~~~~~~---~~VLeiG~G~G~~~~~la~~~~~~~~v~~i--D~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~ 145 (247)
T 1sui_A 71 LSMLLKLINA---KNTMEIGVYTGYSLLATALAIPEDGKILAM--DINKENYELGLPVIKKAGVDHKIDFREGPALPVLD 145 (247)
T ss_dssp HHHHHHHTTC---CEEEEECCGGGHHHHHHHHHSCTTCEEEEE--ESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred HHHHHHhhCc---CEEEEeCCCcCHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHH
Confidence 3444444443 35699999999999999987 6899988 5567777777654 43 78999987543 3
Q ss_pred -C-----CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 334 -F-----FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 334 -f-----~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
+ ++++||+|++... .. ....++.++.++|||||++++++.+.
T Consensus 146 ~l~~~~~~~~~fD~V~~d~~----~~--~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 146 EMIKDEKNHGSYDFIFVDAD----KD--NYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp HHHHSGGGTTCBSEEEECSC----ST--THHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred HHHhccCCCCCEEEEEEcCc----hH--HHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 2 2578999998532 22 26789999999999999999977554
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-08 Score=96.21 Aligned_cols=126 Identities=15% Similarity=0.156 Sum_probs=92.0
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----CC---eeEEEccc-ccCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----GL---ISMHISVS-QRLPF 334 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~-~~lpf 334 (430)
+..+....+.+ .+|||||||+|.+++.++..+ .+|+++ |+++.+++.|+++ |. +.+..+|. +.++.
T Consensus 6 L~~l~~~v~~g--~~VlDIGtGsG~l~i~la~~~~~~~V~av--Di~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~ 81 (225)
T 3kr9_A 6 LELVASFVSQG--AILLDVGSDHAYLPIELVERGQIKSAIAG--EVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE 81 (225)
T ss_dssp HHHHHTTSCTT--EEEEEETCSTTHHHHHHHHTTSEEEEEEE--ESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG
T ss_pred HHHHHHhCCCC--CEEEEeCCCcHHHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc
Confidence 44455555543 357999999999999999985 468888 5567777766654 43 88999986 44542
Q ss_pred CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
...||+|+..+.... .+..++.+....|+|||+|++... ...+.+.+.+.+.||.++...
T Consensus 82 -~~~~D~IviaG~Gg~-----~i~~Il~~~~~~L~~~~~lVlq~~-----~~~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 82 -TDQVSVITIAGMGGR-----LIARILEEGLGKLANVERLILQPN-----NREDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp -GGCCCEEEEEEECHH-----HHHHHHHHTGGGCTTCCEEEEEES-----SCHHHHHHHHHHTTEEEEEEE
T ss_pred -CcCCCEEEEcCCChH-----HHHHHHHHHHHHhCCCCEEEEECC-----CCHHHHHHHHHHCCCEEEEEE
Confidence 226999887544321 367899999999999999999653 235678888999999988755
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.3e-09 Score=105.14 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=67.6
Q ss_pred cEEEEEcCCccHHHHHHHHc-C--CEEEEEecCCChhHHHHHHhc-----------------CCeeEEEcccccC--CCC
Q 043503 278 RIGLDIGGGTGTFAARMRER-N--VTIITTSLNLDGPFNSFIASR-----------------GLISMHISVSQRL--PFF 335 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g--~~Vv~vdiD~s~~~le~a~~r-----------------g~i~~~~~d~~~l--pf~ 335 (430)
.+|||+|||+|.++..+++. | .+|+++ |+++.+++.|+++ ..+.++.+|+... +++
T Consensus 107 ~~VLDiG~G~G~~~~~la~~~g~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~ 184 (336)
T 2b25_A 107 DTVLEAGSGSGGMSLFLSKAVGSQGRVISF--EVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK 184 (336)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEE--ESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCceEEEE--eCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccC
Confidence 45699999999999999987 4 789988 6678888777653 2488999998776 466
Q ss_pred CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 336 ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 336 d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+++||+|++.... ...++.++.++|+|||.+++..
T Consensus 185 ~~~fD~V~~~~~~--------~~~~l~~~~~~LkpgG~lv~~~ 219 (336)
T 2b25_A 185 SLTFDAVALDMLN--------PHVTLPVFYPHLKHGGVCAVYV 219 (336)
T ss_dssp ---EEEEEECSSS--------TTTTHHHHGGGEEEEEEEEEEE
T ss_pred CCCeeEEEECCCC--------HHHHHHHHHHhcCCCcEEEEEe
Confidence 7789999994221 1237899999999999998754
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=9.1e-09 Score=104.03 Aligned_cols=118 Identities=14% Similarity=0.060 Sum_probs=86.4
Q ss_pred cEEEEEcCCccHHHHHHHHcCC--EEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRERNV--TIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~--~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.++..++..+. +|+++ |+++.+++.|+++ | .+.+.++|+..+++++++||+|+++..+
T Consensus 219 ~~vLD~gCGsG~~~i~~a~~~~~~~v~g~--Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPy 296 (373)
T 3tm4_A 219 GSVLDPMCGSGTILIELALRRYSGEIIGI--EKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPY 296 (373)
T ss_dssp CCEEETTCTTCHHHHHHHHTTCCSCEEEE--ESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCC
T ss_pred CEEEEccCcCcHHHHHHHHhCCCCeEEEE--eCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCCC
Confidence 3469999999999999999976 89998 6678888877655 4 3899999999999888999999997554
Q ss_pred hhcCC-----chhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 349 SNWIP-----DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 349 ~~~~~-----d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
..... ......++.++.|+| ||.+++.. + ..+.+.+.+.+.||+..+..
T Consensus 297 g~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~--~----~~~~~~~~~~~~G~~~~~~~ 350 (373)
T 3tm4_A 297 GLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFIT--T----EKKAIEEAIAENGFEIIHHR 350 (373)
T ss_dssp C------CCHHHHHHHHHHHHHHHE--EEEEEEEE--S----CHHHHHHHHHHTTEEEEEEE
T ss_pred CcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEE--C----CHHHHHHHHHHcCCEEEEEE
Confidence 32111 111366888999999 44444322 1 13556778889999987644
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-09 Score=100.19 Aligned_cols=90 Identities=14% Similarity=0.113 Sum_probs=71.7
Q ss_pred cEEEEEcCCccHHHHHHHHcC-------CEEEEEecCCChhHHHHHHhc----C-------CeeEEEcccccCC----CC
Q 043503 278 RIGLDIGGGTGTFAARMRERN-------VTIITTSLNLDGPFNSFIASR----G-------LISMHISVSQRLP----FF 335 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g-------~~Vv~vdiD~s~~~le~a~~r----g-------~i~~~~~d~~~lp----f~ 335 (430)
.+|||+|||+|.++..+++.. .+|+++ |+++.+++.++++ + .+.++.+|..... ..
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGL--ERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEE--ESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEE--eCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 456999999999999999874 389988 6678888777654 4 4888999987754 55
Q ss_pred CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 336 ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 336 d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+++||+|++...+.+ + +.++.++|+|||++++..
T Consensus 160 ~~~fD~I~~~~~~~~-~--------~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 160 LGLFDAIHVGASASE-L--------PEILVDLLAENGKLIIPI 193 (227)
T ss_dssp HCCEEEEEECSBBSS-C--------CHHHHHHEEEEEEEEEEE
T ss_pred CCCcCEEEECCchHH-H--------HHHHHHhcCCCcEEEEEE
Confidence 678999999877743 2 468899999999999864
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-09 Score=100.95 Aligned_cols=97 Identities=21% Similarity=0.180 Sum_probs=74.5
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC---eeEEEccccc----CCCCC--CceeE
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQR----LPFFE--NTLDI 341 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~----lpf~d--~sfDl 341 (430)
++|||||||+|..+..+++. +.+|+++ |+++.+++.|+++ |. +.++.+|+.. ++..+ ++||+
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~i--D~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDGQIIAC--DQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEE--ESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 35699999999999999987 5689988 6678888777654 33 7888888643 33334 78999
Q ss_pred EEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecccc
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF 382 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~ 382 (430)
|++.... .....++.++.++|+|||++++++....
T Consensus 152 V~~d~~~------~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 152 IFIDADK------RNYPRYYEIGLNLLRRGGLMVIDNVLWH 186 (232)
T ss_dssp EEECSCG------GGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred EEECCCH------HHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence 9985432 1367899999999999999999876643
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-09 Score=105.52 Aligned_cols=105 Identities=14% Similarity=0.255 Sum_probs=73.8
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFEN 337 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~ 337 (430)
++.++.........+|||||||+|.++..+++++.+|+++ |+++.+++.++++ + .+.++.+|+..++++
T Consensus 17 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~-- 92 (285)
T 1zq9_A 17 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVAC--ELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-- 92 (285)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEE--ESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--
T ss_pred HHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEE--ECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--
Confidence 3444443333344567999999999999999999999998 6668888877764 2 378999999887765
Q ss_pred ceeEEEEccchhhcCCchhHHHHH--------------HHH--HHhccCCcEEE
Q 043503 338 TLDIVHSMHVLSNWIPDSMLEFTL--------------YDI--YRLLRPGGIFW 375 (430)
Q Consensus 338 sfDlV~~~~~L~~~~~d~~l~~~L--------------~ei--~RvLrPGG~lv 375 (430)
+||+|+++..+ +|..+ .+..++ .|+ .++|+|||.++
T Consensus 93 ~fD~vv~nlpy-~~~~~-~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 93 FFDTCVANLPY-QISSP-FVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CCSEEEEECCG-GGHHH-HHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred hhcEEEEecCc-ccchH-HHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 79999996544 44322 122222 233 37999999763
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-09 Score=100.03 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=76.9
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccC-C
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRL-P 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~l-p 333 (430)
+..+....++ ++|||+|||+|.++..+++. +.+|+++ |+++.+++.++++ | .+.++.+|+... +
T Consensus 61 l~~l~~~~~~---~~vLdiG~G~G~~~~~la~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~ 135 (229)
T 2avd_A 61 LANLARLIQA---KKALDLGTFTGYSALALALALPADGRVVTC--EVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLD 135 (229)
T ss_dssp HHHHHHHTTC---CEEEEECCTTSHHHHHHHTTSCTTCEEEEE--ESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred HHHHHHhcCC---CEEEEEcCCccHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHH
Confidence 3344444443 35699999999999999986 5789988 5567777776654 3 488888886443 1
Q ss_pred -CCC----CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 334 -FFE----NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 334 -f~d----~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
+.+ ++||+|++.... . ....++.++.++|+|||.+++++.+.
T Consensus 136 ~~~~~~~~~~~D~v~~d~~~----~--~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 136 ELLAAGEAGTFDVAVVDADK----E--NCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp HHHHTTCTTCEEEEEECSCS----T--THHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred HHHhcCCCCCccEEEECCCH----H--HHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 211 689999995331 2 26789999999999999999977654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.90 E-value=4.3e-09 Score=98.08 Aligned_cols=89 Identities=13% Similarity=0.192 Sum_probs=70.1
Q ss_pred cEEEEEcCCccHHHHHHHHc-C-------CEEEEEecCCChhHHHHHHhc-----------CCeeEEEcccccCCCCC-C
Q 043503 278 RIGLDIGGGTGTFAARMRER-N-------VTIITTSLNLDGPFNSFIASR-----------GLISMHISVSQRLPFFE-N 337 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g-------~~Vv~vdiD~s~~~le~a~~r-----------g~i~~~~~d~~~lpf~d-~ 337 (430)
.+|||+|||+|.++..+++. + .+|+++ |+++.+++.++++ ..+.++.+|... ++++ +
T Consensus 86 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~ 162 (227)
T 1r18_A 86 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGI--EHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNA 162 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEE--ESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGC
T ss_pred CEEEEECCCccHHHHHHHHhcccccCCccCEEEEE--EcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCC
Confidence 35699999999999999986 4 489988 6678888777653 258888998876 4444 7
Q ss_pred ceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 338 TLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 338 sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+||+|++...+.+ + ..++.++|||||++++..
T Consensus 163 ~fD~I~~~~~~~~-~--------~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 163 PYNAIHVGAAAPD-T--------PTELINQLASGGRLIVPV 194 (227)
T ss_dssp SEEEEEECSCBSS-C--------CHHHHHTEEEEEEEEEEE
T ss_pred CccEEEECCchHH-H--------HHHHHHHhcCCCEEEEEE
Confidence 8999999877743 3 258899999999999864
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-09 Score=106.18 Aligned_cols=100 Identities=14% Similarity=0.009 Sum_probs=67.1
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecC-C-ChhHHHHHH-h-c--CCeeEEEc-ccccCCCCCCceeEEEEccchh-
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLN-L-DGPFNSFIA-S-R--GLISMHIS-VSQRLPFFENTLDIVHSMHVLS- 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD-~-s~~~le~a~-~-r--g~i~~~~~-d~~~lpf~d~sfDlV~~~~~L~- 349 (430)
.+|||+|||+|.++..++++ .+|+++|+. . ++.+++.+. + . ..+.++.+ |+..++ +++||+|+|.....
T Consensus 84 ~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~~~~~ 160 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLLCDIGESS 160 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEEECCCCCC
T ss_pred CEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEEECCcccc
Confidence 46799999999999999998 578998661 0 122111111 1 1 23788888 777665 56899999965431
Q ss_pred -hcCCchh-HHHHHHHHHHhccCCcEEEEeecc
Q 043503 350 -NWIPDSM-LEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 350 -~~~~d~~-l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
++..+.. ...+|.++.++|||||.|++..|.
T Consensus 161 g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~ 193 (305)
T 2p41_A 161 PNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 193 (305)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred CcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 2222211 115789999999999999986554
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.4e-09 Score=102.54 Aligned_cols=133 Identities=12% Similarity=0.133 Sum_probs=86.6
Q ss_pred cCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----CC---eeEEEcc
Q 043503 257 DNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----GL---ISMHISV 328 (430)
Q Consensus 257 ~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d 328 (430)
+.......++.++...+.....+|||+|||+|.++..++.. +.+|+++ |+++.+++.|+++ |. +.++++|
T Consensus 104 pr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~v--Dis~~al~~A~~n~~~~~l~~~v~~~~~D 181 (284)
T 1nv8_A 104 PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFAT--DVSSKAVEIARKNAERHGVSDRFFVRKGE 181 (284)
T ss_dssp CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEE--ESCHHHHHHHHHHHHHTTCTTSEEEEESS
T ss_pred cChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCceEEEECc
Confidence 44444444555554332112235699999999999999998 7899998 6778888877654 43 8899998
Q ss_pred cccCCCCCCce---eEEEEccchhh----------cCCch------hHHHHHHHHH-HhccCCcEEEEeeccccCcCcHH
Q 043503 329 SQRLPFFENTL---DIVHSMHVLSN----------WIPDS------MLEFTLYDIY-RLLRPGGIFWLDRFFCFGSQLNE 388 (430)
Q Consensus 329 ~~~lpf~d~sf---DlV~~~~~L~~----------~~~d~------~l~~~L~ei~-RvLrPGG~lvl~~f~~~~~~~~~ 388 (430)
+... ++ ++| |+|+++..... +.+.. +...++.++. +.|+|||++++..- ....+
T Consensus 182 ~~~~-~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~----~~q~~ 255 (284)
T 1nv8_A 182 FLEP-FK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG----EDQVE 255 (284)
T ss_dssp TTGG-GG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC----TTCHH
T ss_pred chhh-cc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC----chHHH
Confidence 8652 22 578 99999622210 11110 1126899999 99999999998532 22334
Q ss_pred HHHHHHHHc
Q 043503 389 TYVPMLDRI 397 (430)
Q Consensus 389 ~~~~ll~~~ 397 (430)
.+.+++.+.
T Consensus 256 ~v~~~~~~~ 264 (284)
T 1nv8_A 256 ELKKIVSDT 264 (284)
T ss_dssp HHTTTSTTC
T ss_pred HHHHHHHhC
Confidence 455555443
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.87 E-value=7.7e-09 Score=103.41 Aligned_cols=98 Identities=19% Similarity=0.166 Sum_probs=74.3
Q ss_pred ccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----------CCeeEEEcccccC-C-CCCCceeEE
Q 043503 277 IRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----------GLISMHISVSQRL-P-FFENTLDIV 342 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~l-p-f~d~sfDlV 342 (430)
.++|||||||+|.++..+++. ..+|+++ |+++.+++.|+++ ..+.++.+|+..+ + +++++||+|
T Consensus 121 ~~~VLdIG~G~G~~a~~la~~~~~~~V~~V--Dis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 121 PKKVLVIGGGDGGVLREVARHASIEQIDMC--EIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp CCEEEEETCSSSHHHHHHTTCTTCCEEEEE--ESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCEEEEECCCccHHHHHHHHcCCCCEEEEE--ECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 356799999999999999987 4688888 6678888887654 2488999997653 2 346789999
Q ss_pred EEccchhhcCCch--hHHHHHHHHHHhccCCcEEEEe
Q 043503 343 HSMHVLSNWIPDS--MLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 343 ~~~~~L~~~~~d~--~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
++.... .+.+.. ....++.++.++|+|||+|++.
T Consensus 199 i~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSD-PIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCC-TTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCC-ccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 995432 211111 1367999999999999999995
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=9.6e-09 Score=101.54 Aligned_cols=119 Identities=15% Similarity=0.156 Sum_probs=83.2
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-----------CCeeEEEccccc-CCCCCCceeEEE
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-----------GLISMHISVSQR-LPFFENTLDIVH 343 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-----------g~i~~~~~d~~~-lpf~d~sfDlV~ 343 (430)
++|||||||+|.++..+++. +.+|+++ |+++.+++.++++ ..+.++.+|+.. ++..+++||+|+
T Consensus 79 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~v--Did~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 79 KRVLIVGGGEGATLREVLKHPTVEKAVMV--DIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CEEEEEECTTSHHHHHHTTSTTCCEEEEE--ESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CeEEEEcCCcCHHHHHHHhcCCCCEEEEE--ECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 56799999999999999987 5688888 6668888777643 248889998765 344578899999
Q ss_pred Eccchhhc---CCchh--HHHHHHHHHHhccCCcEEEEeeccc--cCcCcHHHHHHHHHHcCCE
Q 043503 344 SMHVLSNW---IPDSM--LEFTLYDIYRLLRPGGIFWLDRFFC--FGSQLNETYVPMLDRIGFK 400 (430)
Q Consensus 344 ~~~~L~~~---~~d~~--l~~~L~ei~RvLrPGG~lvl~~f~~--~~~~~~~~~~~ll~~~Gfk 400 (430)
+.... ++ .+... ...++.++.++|+|||.+++..... ...+....+.+.+++. |.
T Consensus 157 ~d~~~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~-F~ 218 (314)
T 1uir_A 157 IDLTD-PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FR 218 (314)
T ss_dssp EECCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CS
T ss_pred ECCCC-cccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHH-CC
Confidence 96443 43 11111 3689999999999999999864221 1223345555666665 44
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.87 E-value=6.7e-09 Score=100.80 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=84.5
Q ss_pred ccEEEEEcCCccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhc----------CCeeEEEccccc-CCCCCCceeEEE
Q 043503 277 IRIGLDIGGGTGTFAARMRER-N-VTIITTSLNLDGPFNSFIASR----------GLISMHISVSQR-LPFFENTLDIVH 343 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~-lpf~d~sfDlV~ 343 (430)
.++|||||||+|.++..++++ + .+|+++ |+++.+++.|+++ ..+.++.+|+.. ++..+++||+|+
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~v--Eid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSVKKATLV--DIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEE--ESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCEEEEECCchHHHHHHHHhCCCCceEEEE--ECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 356799999999999999988 4 688888 5668888887753 238899998765 344467899999
Q ss_pred EccchhhcCCch--hHHHHHHHHHHhccCCcEEEEeeccc-cCcCcHHHHHHHHHHcCCEEEE
Q 043503 344 SMHVLSNWIPDS--MLEFTLYDIYRLLRPGGIFWLDRFFC-FGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 344 ~~~~L~~~~~d~--~l~~~L~ei~RvLrPGG~lvl~~f~~-~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
+.... ++.+.. ....++.++.++|+|||.+++..... ...+....+.+.+++. |..+.
T Consensus 154 ~d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~ 214 (275)
T 1iy9_A 154 VDSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-FPITK 214 (275)
T ss_dssp ESCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEE
T ss_pred ECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh-CCCeE
Confidence 95332 322211 12578999999999999999863211 1122234455666666 55443
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=9.2e-09 Score=107.20 Aligned_cols=142 Identities=17% Similarity=0.220 Sum_probs=95.8
Q ss_pred CCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC-eeEEEccc
Q 043503 258 NGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL-ISMHISVS 329 (430)
Q Consensus 258 ~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~ 329 (430)
+......+..++...++. +|||+|||+|..+..++++ ..+|+++ |+++.+++.++++ |. +.++.+|+
T Consensus 86 Qd~ss~l~a~~L~~~~g~---~VLDlgaGpG~kt~~LA~~~~~~g~V~Av--Dis~~~l~~a~~n~~r~G~~v~~~~~Da 160 (464)
T 3m6w_A 86 QEPSAQAVGVLLDPKPGE---RVLDLAAAPGGKTTHLAARMGGKGLLLAN--EVDGKRVRGLLENVERWGAPLAVTQAPP 160 (464)
T ss_dssp CCTTTHHHHHHHCCCTTC---EEEESSCTTCHHHHHHHHHTTTCSEEEEE--CSCHHHHHHHHHHHHHHCCCCEEECSCH
T ss_pred ECHHHHHHHHhcCcCCCC---EEEEEcCCcCHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHHcCCeEEEEECCH
Confidence 333344455666655544 4599999999999999976 3688888 7778888777654 44 77788888
Q ss_pred ccCC-CCCCceeEEEEc------cchh-------hcCCch------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHH
Q 043503 330 QRLP-FFENTLDIVHSM------HVLS-------NWIPDS------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNET 389 (430)
Q Consensus 330 ~~lp-f~d~sfDlV~~~------~~L~-------~~~~d~------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~ 389 (430)
..++ +.+++||+|++. .++. .|.++. ....+|.++.++|||||++++++-.....+-.+.
T Consensus 161 ~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~v 240 (464)
T 3m6w_A 161 RALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGV 240 (464)
T ss_dssp HHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHH
T ss_pred HHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHH
Confidence 7766 346899999962 1111 111110 1267899999999999999987633333334456
Q ss_pred HHHHHHHc-CCEEEEE
Q 043503 390 YVPMLDRI-GFKKLRW 404 (430)
Q Consensus 390 ~~~ll~~~-Gfk~l~~ 404 (430)
+..++++. +|+.+..
T Consensus 241 v~~~l~~~~~~~l~~~ 256 (464)
T 3m6w_A 241 VAHFLKAHPEFRLEDA 256 (464)
T ss_dssp HHHHHHHCTTEEEECC
T ss_pred HHHHHHHCCCcEEEec
Confidence 66777776 5877654
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.4e-09 Score=101.55 Aligned_cols=121 Identities=16% Similarity=0.143 Sum_probs=80.5
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----------CCeeEEEccccc-CCCCCCceeEEEE
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----------GLISMHISVSQR-LPFFENTLDIVHS 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~-lpf~d~sfDlV~~ 344 (430)
.+|||||||+|.++..+++. ..+|+++ |+++.+++.++++ ..+.++.+|+.. ++..+++||+|++
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~v--Did~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKHDSVEKAILC--EVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTSTTCSEEEEE--ESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHhcCCCCEEEEE--ECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 56799999999999999988 4688888 6668888777653 248889998755 3444678999998
Q ss_pred ccchhhcC-Cch--hHHHHHHHHHHhccCCcEEEEeeccc-cCcCcHHHHHHHHHHcCCEEE
Q 043503 345 MHVLSNWI-PDS--MLEFTLYDIYRLLRPGGIFWLDRFFC-FGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 345 ~~~L~~~~-~d~--~l~~~L~ei~RvLrPGG~lvl~~f~~-~~~~~~~~~~~ll~~~Gfk~l 402 (430)
... .++. +.. ....++.++.++|+|||.+++..... ........+.+.+.+. |..+
T Consensus 170 d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v 229 (296)
T 1inl_A 170 DST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPIT 229 (296)
T ss_dssp EC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEE
T ss_pred cCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH-CCce
Confidence 432 2211 110 12678999999999999999863111 1112234455555555 4433
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=8.9e-09 Score=102.25 Aligned_cols=121 Identities=18% Similarity=0.197 Sum_probs=82.7
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----------CCeeEEEccccc-CCCCCCceeEEEE
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----------GLISMHISVSQR-LPFFENTLDIVHS 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~-lpf~d~sfDlV~~ 344 (430)
++|||||||+|.++..+++. +.+|+++ |+++.+++.++++ ..+.++.+|+.. ++..+++||+|++
T Consensus 118 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~v--Dis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 118 KNVLVVGGGDGGIIRELCKYKSVENIDIC--EIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp CEEEEEECTTCHHHHHHTTCTTCCEEEEE--ESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHcCCCCEEEEE--ECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 56799999999999999987 4788888 6678888888764 237888998755 3334678999998
Q ss_pred ccchhhcCCchhH--HHHHHHHHHhccCCcEEEEeeccc-cCcCcHHHHHHHHHHcCCEEE
Q 043503 345 MHVLSNWIPDSML--EFTLYDIYRLLRPGGIFWLDRFFC-FGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 345 ~~~L~~~~~d~~l--~~~L~ei~RvLrPGG~lvl~~f~~-~~~~~~~~~~~ll~~~Gfk~l 402 (430)
... .++.+...+ ..++.++.++|+|||++++..... ...+....+.+.+++. |..+
T Consensus 196 d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v 254 (321)
T 2pt6_A 196 DSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKV 254 (321)
T ss_dssp ECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTT-CSEE
T ss_pred CCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCCe
Confidence 532 222221112 689999999999999999853221 1112233455555555 4433
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-08 Score=103.26 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=90.7
Q ss_pred hHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCC-
Q 043503 262 DYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLP- 333 (430)
Q Consensus 262 ~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lp- 333 (430)
...+..++...++. +|||+|||+|..+..+++.. .+|+++| +++.+++.++++ |. +.++.+|+..++
T Consensus 235 s~~~~~~l~~~~g~---~VLDlgaG~G~~t~~la~~~~~~~v~a~D--~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~ 309 (429)
T 1sqg_A 235 AQGCMTWLAPQNGE---HILDLCAAPGGKTTHILEVAPEAQVVAVD--IDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ 309 (429)
T ss_dssp HHTHHHHHCCCTTC---EEEEESCTTCHHHHHHHHHCTTCEEEEEE--SSTTTHHHHHHHHHHTTCCCEEEECCTTCTHH
T ss_pred HHHHHHHcCCCCcC---eEEEECCCchHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHHHHHcCCCeEEEeCchhhchh
Confidence 33344555554443 46999999999999999873 6899985 455656555443 54 788888988776
Q ss_pred -CCCCceeEEEEc------cchhhcCCch--------------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHH
Q 043503 334 -FFENTLDIVHSM------HVLSNWIPDS--------------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVP 392 (430)
Q Consensus 334 -f~d~sfDlV~~~------~~L~~~~~d~--------------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ 392 (430)
+++++||+|++. .++.+ .++. ....++.++.++|||||++++++......+-.+.+..
T Consensus 310 ~~~~~~fD~Vl~D~Pcsg~g~~~~-~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~ 388 (429)
T 1sqg_A 310 WCGEQQFDRILLDAPCSATGVIRR-HPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKA 388 (429)
T ss_dssp HHTTCCEEEEEEECCCCCGGGTTT-CTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHH
T ss_pred hcccCCCCEEEEeCCCCcccccCC-CcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHH
Confidence 566889999972 11211 2220 1147899999999999999998744333333345666
Q ss_pred HHHHc-CCEEEE
Q 043503 393 MLDRI-GFKKLR 403 (430)
Q Consensus 393 ll~~~-Gfk~l~ 403 (430)
.+++. +|+.+.
T Consensus 389 ~l~~~~~~~~~~ 400 (429)
T 1sqg_A 389 FLQRTADAELCE 400 (429)
T ss_dssp HHHHCTTCEECS
T ss_pred HHHhCCCCEEeC
Confidence 66664 577643
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-08 Score=98.92 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=85.1
Q ss_pred cEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHh----cCC---eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIAS----RGL---ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~----rg~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||+|||+|.++..++.+| .+|+++ |+++.+.+.+++ +|+ +.++.+|+..++ ..+.||.|++....
T Consensus 127 ~~VlD~~aG~G~~~i~~a~~g~~~V~av--D~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~~p~- 202 (278)
T 3k6r_A 127 ELVVDMFAGIGHLSLPIAVYGKAKVIAI--EKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGYVV- 202 (278)
T ss_dssp CEEEETTCTTTTTTHHHHHHTCCEEEEE--CCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCCS-
T ss_pred CEEEEecCcCcHHHHHHHHhcCCeEEEE--ECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEEECCCC-
Confidence 347999999999999999886 689988 556666655544 344 888999988876 46789999985322
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccC---cCcHHHHHHHHHHcCCEEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG---SQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~---~~~~~~~~~ll~~~Gfk~l~ 403 (430)
. ...++..+.++|+|||++.+..+.... ....+.+.......|+++..
T Consensus 203 ----~--~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~ 253 (278)
T 3k6r_A 203 ----R--THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ----S--GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred ----c--HHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEEE
Confidence 1 235778888999999998776655322 12345677888899998644
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=8.7e-09 Score=100.32 Aligned_cols=99 Identities=18% Similarity=0.183 Sum_probs=74.9
Q ss_pred ccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----------CCeeEEEcccccC-CCCCCceeEEE
Q 043503 277 IRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----------GLISMHISVSQRL-PFFENTLDIVH 343 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~l-pf~d~sfDlV~ 343 (430)
.++|||||||+|.++..+++. +.+|+++ |+++.+++.++++ ..+.++.+|+... +..+++||+|+
T Consensus 79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~v--Did~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 79 PKNVLVVGGGDGGIIRELCKYKSVENIDIC--EIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEE--ESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCeEEEEeCCcCHHHHHHHHcCCCCEEEEE--ECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 357799999999999999987 4688888 6668888888764 2378888887653 33367899999
Q ss_pred EccchhhcCCchhH--HHHHHHHHHhccCCcEEEEee
Q 043503 344 SMHVLSNWIPDSML--EFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 344 ~~~~L~~~~~d~~l--~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+.... ++.+...+ ..++.++.++|+|||.+++..
T Consensus 157 ~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCC-TTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 94332 32222222 689999999999999999863
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.6e-09 Score=98.67 Aligned_cols=106 Identities=16% Similarity=0.081 Sum_probs=78.1
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccC-C
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRL-P 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~l-p 333 (430)
+..++...+. ++|||||||+|..+..+++. +.+|+++ |+++.+.+.++++ |. +.++.+|+... +
T Consensus 62 l~~l~~~~~~---~~VLeiG~G~G~~~~~la~~~~~~~~v~~i--D~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~ 136 (237)
T 3c3y_A 62 MSFVLKLVNA---KKTIEVGVFTGYSLLLTALSIPDDGKITAI--DFDREAYEIGLPFIRKAGVEHKINFIESDAMLALD 136 (237)
T ss_dssp HHHHHHHTTC---CEEEEECCTTSHHHHHHHHHSCTTCEEEEE--ESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred HHHHHHhhCC---CEEEEeCCCCCHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 4444444443 45699999999999999986 6789988 6668888777654 43 78898887543 2
Q ss_pred -C-----CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 334 -F-----FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 334 -f-----~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
+ ++++||+|++.... .....++.++.++|+|||++++++.+.
T Consensus 137 ~l~~~~~~~~~fD~I~~d~~~------~~~~~~l~~~~~~L~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 137 NLLQGQESEGSYDFGFVDADK------PNYIKYHERLMKLVKVGGIVAYDNTLW 184 (237)
T ss_dssp HHHHSTTCTTCEEEEEECSCG------GGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred HHHhccCCCCCcCEEEECCch------HHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 2 25789999985321 236789999999999999999976543
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=6e-09 Score=102.74 Aligned_cols=99 Identities=14% Similarity=0.181 Sum_probs=72.5
Q ss_pred ccEEEEEcCCccHHHHHHHHcC--CEEEEEecCCChhHHHHHHhc----------CCeeEEEccccc-CCCCCCceeEEE
Q 043503 277 IRIGLDIGGGTGTFAARMRERN--VTIITTSLNLDGPFNSFIASR----------GLISMHISVSQR-LPFFENTLDIVH 343 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~-lpf~d~sfDlV~ 343 (430)
.++|||||||+|.++..++++. .+|+++ |+++.+++.|+++ ..+.++.+|+.. ++..+++||+|+
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~v--Did~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHPSVESVVQC--EIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEE--ESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHcCCCCEEEEE--ECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 3567999999999999999883 688888 6668888877653 238889998755 344568899999
Q ss_pred EccchhhcCCch--hHHHHHHHHHHhccCCcEEEEee
Q 043503 344 SMHVLSNWIPDS--MLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 344 ~~~~L~~~~~d~--~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+.... ++.+.. ....++.++.++|+|||.+++..
T Consensus 174 ~d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSD-PMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCC-CCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 95332 322211 13568999999999999999865
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-08 Score=105.66 Aligned_cols=142 Identities=11% Similarity=0.116 Sum_probs=96.7
Q ss_pred CCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcc
Q 043503 258 NGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL--ISMHISV 328 (430)
Q Consensus 258 ~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d 328 (430)
+......+..++...++. +|||+|||+|..+..+++. ..+|+++ |+++.+++.++++ |. +.+..+|
T Consensus 90 Qd~ss~l~~~~L~~~~g~---~VLDlcaGpGgkt~~lA~~~~~~g~V~Av--Dis~~rl~~~~~n~~r~g~~nv~v~~~D 164 (456)
T 3m4x_A 90 QEPSAMIVGTAAAAKPGE---KVLDLCAAPGGKSTQLAAQMKGKGLLVTN--EIFPKRAKILSENIERWGVSNAIVTNHA 164 (456)
T ss_dssp CCTTTHHHHHHHCCCTTC---EEEESSCTTCHHHHHHHHHHTTCSEEEEE--CSSHHHHHHHHHHHHHHTCSSEEEECCC
T ss_pred ECHHHHHHHHHcCCCCCC---EEEEECCCcCHHHHHHHHHcCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCceEEEeCC
Confidence 333344455666655543 4699999999999999986 3688888 6678777666544 54 7778888
Q ss_pred cccCC-CCCCceeEEEEccc------hh-------hcCCch------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHH
Q 043503 329 SQRLP-FFENTLDIVHSMHV------LS-------NWIPDS------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNE 388 (430)
Q Consensus 329 ~~~lp-f~d~sfDlV~~~~~------L~-------~~~~d~------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~ 388 (430)
+..++ ..+++||+|++.-. +. .|.++. ....+|.++.++|||||.+++++-.....+-.+
T Consensus 165 a~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~ 244 (456)
T 3m4x_A 165 PAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEE 244 (456)
T ss_dssp HHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHH
T ss_pred HHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHH
Confidence 87765 34678999998321 11 111110 123789999999999999998764333344456
Q ss_pred HHHHHHHHcCCEEEEE
Q 043503 389 TYVPMLDRIGFKKLRW 404 (430)
Q Consensus 389 ~~~~ll~~~Gfk~l~~ 404 (430)
.+..++++.+|+++..
T Consensus 245 vv~~~l~~~~~~l~~~ 260 (456)
T 3m4x_A 245 IISWLVENYPVTIEEI 260 (456)
T ss_dssp HHHHHHHHSSEEEECC
T ss_pred HHHHHHHhCCCEEEec
Confidence 6788888888776654
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.83 E-value=4.8e-09 Score=104.00 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=71.0
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----------CCeeEEEccccc-CCCCCCceeEEEE
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----------GLISMHISVSQR-LPFFENTLDIVHS 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~-lpf~d~sfDlV~~ 344 (430)
++|||||||+|.++..+++. ..+|+++ |+++.+++.|+++ ..+.++.+|+.. ++..+++||+|++
T Consensus 110 ~~VLdIG~G~G~~~~~l~~~~~~~~v~~v--Did~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 110 KRVLIIGGGDGGILREVLKHESVEKVTMC--EIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp CEEEEESCTTSHHHHHHTTCTTCCEEEEE--CSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHHcCCCCEEEEE--ECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 56799999999999999987 4688888 7778898888764 237888888755 3335678999999
Q ss_pred ccchhhcCCchhH--HHHHHHHHHhccCCcEEEEee
Q 043503 345 MHVLSNWIPDSML--EFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 345 ~~~L~~~~~d~~l--~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.. ..++.+...+ ..++.++.++|+|||.+++..
T Consensus 188 d~-~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CC-C-------------HHHHHHHHEEEEEEEEEEC
T ss_pred cC-CCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 54 3233322222 689999999999999999864
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-08 Score=103.58 Aligned_cols=135 Identities=11% Similarity=0.136 Sum_probs=91.4
Q ss_pred CCchhHHHHHHHccC--CCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC--eeEEE
Q 043503 258 NGKLDYGIDQVLSMK--PLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL--ISMHI 326 (430)
Q Consensus 258 ~~~~~~~id~lL~~~--p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~ 326 (430)
+......+..++... ++ .+|||+|||+|..+..+++. +..|+++ |+++.+++.++++ |. +.++.
T Consensus 100 Qd~~s~l~~~~L~~~~~~g---~~VLDl~aGpG~kt~~lA~~~~~~g~V~av--Dis~~~l~~~~~n~~r~g~~nv~~~~ 174 (479)
T 2frx_A 100 QEASSMLPVAALFADGNAP---QRVMDVAAAPGSKTTQISARMNNEGAILAN--EFSASRVKVLHANISRCGISNVALTH 174 (479)
T ss_dssp CCHHHHHHHHHHTTTTCCC---SEEEESSCTTSHHHHHHHHHTTTCSEEEEE--CSSHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred ECHHHHHHHHHhCcccCCC---CEEEEeCCCCCHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCcEEEEe
Confidence 343344444555544 43 35699999999999999986 3688888 7778888776654 54 78888
Q ss_pred cccccCCC-CCCceeEEEEc------cchhhcCCc--------------hhHHHHHHHHHHhccCCcEEEEeeccccCcC
Q 043503 327 SVSQRLPF-FENTLDIVHSM------HVLSNWIPD--------------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ 385 (430)
Q Consensus 327 ~d~~~lpf-~d~sfDlV~~~------~~L~~~~~d--------------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~ 385 (430)
+|+..++. .+++||+|++. ..+.. .++ .....+|.++.++|||||++++++......+
T Consensus 175 ~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~-~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~E 253 (479)
T 2frx_A 175 FDGRVFGAAVPEMFDAILLDAPCSGEGVVRK-DPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEE 253 (479)
T ss_dssp CCSTTHHHHSTTCEEEEEEECCCCCGGGGGT-CTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTT
T ss_pred CCHHHhhhhccccCCEEEECCCcCCcccccC-CHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCccc
Confidence 89887764 56789999982 11211 111 0135689999999999999999864433333
Q ss_pred cHHHHHHHHHHcC
Q 043503 386 LNETYVPMLDRIG 398 (430)
Q Consensus 386 ~~~~~~~ll~~~G 398 (430)
-.+.+..++++.+
T Consensus 254 ne~vv~~~l~~~~ 266 (479)
T 2frx_A 254 NEAVCLWLKETYP 266 (479)
T ss_dssp THHHHHHHHHHST
T ss_pred CHHHHHHHHHHCC
Confidence 3345666677665
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.7e-08 Score=102.51 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=89.1
Q ss_pred HHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C--CeeEEEccccc----CC
Q 043503 264 GIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQR----LP 333 (430)
Q Consensus 264 ~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~----lp 333 (430)
.++.++.........+|||+|||+|.++..+++.+.+|+++ |+++.+++.|+++ | .+.++.+|+.. ++
T Consensus 274 l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gv--D~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~ 351 (433)
T 1uwv_A 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGV--EGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP 351 (433)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEE--ESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG
T ss_pred HHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEE--eCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhh
Confidence 34455443332233467999999999999999998899998 6678888777654 4 38899999866 44
Q ss_pred CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 334 FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 334 f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+.+++||+|++...... ...++..+. .++|++.++++ |....+.++. ..+.+.||+..+..
T Consensus 352 ~~~~~fD~Vv~dPPr~g------~~~~~~~l~-~~~p~~ivyvs---c~p~tlard~-~~l~~~Gy~~~~~~ 412 (433)
T 1uwv_A 352 WAKNGFDKVLLDPARAG------AAGVMQQII-KLEPIRIVYVS---CNPATLARDS-EALLKAGYTIARLA 412 (433)
T ss_dssp GGTTCCSEEEECCCTTC------CHHHHHHHH-HHCCSEEEEEE---SCHHHHHHHH-HHHHHTTCEEEEEE
T ss_pred hhcCCCCEEEECCCCcc------HHHHHHHHH-hcCCCeEEEEE---CChHHHHhhH-HHHHHCCcEEEEEE
Confidence 56788999999543311 223444444 37899999886 5444444444 45667899988754
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-08 Score=100.15 Aligned_cols=113 Identities=10% Similarity=0.052 Sum_probs=83.3
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
.+|||+|||+|.++.. ++.+.+|+++ |+++.+++.++++ + .+.++.+|+..+. ++||+|++.... .
T Consensus 197 ~~VLDlg~G~G~~~l~-a~~~~~V~~v--D~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~-~ 269 (336)
T 2yx1_A 197 DVVVDMFAGVGPFSIA-CKNAKKIYAI--DINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK-F 269 (336)
T ss_dssp CEEEETTCTTSHHHHH-TTTSSEEEEE--ESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT-T
T ss_pred CEEEEccCccCHHHHh-ccCCCEEEEE--ECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH-h
Confidence 4569999999999999 8867789998 6667777766654 4 3889999988765 789999995322 1
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHc-CCEEEEEEec
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRI-GFKKLRWNVG 407 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~-Gfk~l~~~~~ 407 (430)
...++..+.++|+|||.+++..+... .+...+.+.+. ||+.......
T Consensus 270 ------~~~~l~~~~~~L~~gG~l~~~~~~~~----~~~~~~~l~~~~~~~i~~~~~v 317 (336)
T 2yx1_A 270 ------AHKFIDKALDIVEEGGVIHYYTIGKD----FDKAIKLFEKKCDCEVLEKRIV 317 (336)
T ss_dssp ------GGGGHHHHHHHEEEEEEEEEEEEESS----SHHHHHHHHHHSEEEEEEEEEE
T ss_pred ------HHHHHHHHHHHcCCCCEEEEEEeecC----chHHHHHHHHhcCCcEEEEEEE
Confidence 23678899999999999998765533 34455556665 7776554433
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=103.26 Aligned_cols=123 Identities=18% Similarity=0.132 Sum_probs=82.5
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccC-CCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRL-PFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~l-pf~d~sfDlV~~~~~L~~~ 351 (430)
.+|||+|||+|.++..++..|..|+++ |+++.+++.++++ |. ..+.++|+..+ +...+.||+|++.......
T Consensus 216 ~~VLDlg~GtG~~sl~~a~~ga~V~av--Dis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~ 293 (393)
T 4dmg_A 216 ERVLDVYSYVGGFALRAARKGAYALAV--DKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK 293 (393)
T ss_dssp CEEEEESCTTTHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred CeEEEcccchhHHHHHHHHcCCeEEEE--ECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence 456999999999999999999888887 7778888777654 54 35678887553 2223449999995332110
Q ss_pred CC------chhHHHHHHHHHHhccCCcEEEEeeccccCc--CcHHHHHHHHHHcCCEEE
Q 043503 352 IP------DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS--QLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 352 ~~------d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~--~~~~~~~~ll~~~Gfk~l 402 (430)
.. ......++..+.++|+|||++++........ ...+.+...+.+.|.+..
T Consensus 294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~ 352 (393)
T 4dmg_A 294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLR 352 (393)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEE
Confidence 00 0124678999999999999998765332211 123455666667776543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-08 Score=103.42 Aligned_cols=125 Identities=10% Similarity=-0.004 Sum_probs=84.7
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C----CeeEEEccccc-CCC---CCCceeEEEE
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G----LISMHISVSQR-LPF---FENTLDIVHS 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g----~i~~~~~d~~~-lpf---~d~sfDlV~~ 344 (430)
.+|||+|||+|.++..++..++ +|+++ |+++.+++.|+++ | .+.++++|+.. ++. ...+||+|++
T Consensus 214 ~~VLDl~cGtG~~sl~la~~ga~~V~~v--D~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~ 291 (385)
T 2b78_A 214 KTVLNLFSYTAAFSVAAAMGGAMATTSV--DLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 291 (385)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBSEEEEE--ESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEeeccCHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence 4579999999999999999875 89998 5567777766544 4 57899998755 231 2458999999
Q ss_pred ccchh----hcCCc--hhHHHHHHHHHHhccCCcEEEEeeccccC--cCcHHHHHHHHHHcCCEEEEE
Q 043503 345 MHVLS----NWIPD--SMLEFTLYDIYRLLRPGGIFWLDRFFCFG--SQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 345 ~~~L~----~~~~d--~~l~~~L~ei~RvLrPGG~lvl~~f~~~~--~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
..... ....+ .....++.++.++|+|||.++++.....- ....+.+...+.+.|.+++..
T Consensus 292 DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~ 359 (385)
T 2b78_A 292 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDL 359 (385)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 53331 11222 12445788889999999999997533211 112344556677788885543
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-08 Score=99.19 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=71.4
Q ss_pred cEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHhc----------------CCeeEEEcccccC-CCCCCce
Q 043503 278 RIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIASR----------------GLISMHISVSQRL-PFFENTL 339 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~r----------------g~i~~~~~d~~~l-pf~d~sf 339 (430)
++|||||||+|.++..+++++ .+|+++ |+++.+++.|+++ ..+.++.+|+... +. +++|
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~~~~~v~~v--Did~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f 153 (281)
T 1mjf_A 77 KRVLVIGGGDGGTVREVLQHDVDEVIMV--EIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF 153 (281)
T ss_dssp CEEEEEECTTSHHHHHHTTSCCSEEEEE--ESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred CeEEEEcCCcCHHHHHHHhCCCCEEEEE--ECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence 567999999999999999884 588888 6668888877654 2378888886542 23 6789
Q ss_pred eEEEEccchhhcCCchh--HHHHHHHHHHhccCCcEEEEee
Q 043503 340 DIVHSMHVLSNWIPDSM--LEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~--l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
|+|++.... ++.+... ...++.++.++|+|||.+++..
T Consensus 154 D~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 154 DVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 999995432 2222111 2678999999999999999863
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.8e-08 Score=97.62 Aligned_cols=113 Identities=14% Similarity=0.068 Sum_probs=78.0
Q ss_pred cEEEEEcC------CccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhcCCeeE-EEcccccCCCCCCceeEEEEccc
Q 043503 278 RIGLDIGG------GTGTFAARMRER---NVTIITTSLNLDGPFNSFIASRGLISM-HISVSQRLPFFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGc------GtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~rg~i~~-~~~d~~~lpf~d~sfDlV~~~~~ 347 (430)
.+|||+|| |+|+ ..++++ +.+|+++|++.. + ..+.+ +++|+..++++ ++||+|+++..
T Consensus 65 ~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~---v------~~v~~~i~gD~~~~~~~-~~fD~Vvsn~~ 132 (290)
T 2xyq_A 65 MRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF---V------SDADSTLIGDCATVHTA-NKWDLIISDMY 132 (290)
T ss_dssp CEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC---B------CSSSEEEESCGGGCCCS-SCEEEEEECCC
T ss_pred CEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC---C------CCCEEEEECccccCCcc-CcccEEEEcCC
Confidence 45799999 5576 333433 479999966543 1 23788 99999887754 68999999532
Q ss_pred hh---hcC-----CchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 348 LS---NWI-----PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 348 L~---~~~-----~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.. ++. .......++.++.|+|||||.|++..+... ....+.+++++.||..++..
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~---~~~~l~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS---WNADLYKLMGHFSWWTAFVT 195 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS---CCHHHHHHHTTEEEEEEEEE
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC---CHHHHHHHHHHcCCcEEEEE
Confidence 10 110 122356799999999999999999765422 23467788899999877654
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.3e-08 Score=100.53 Aligned_cols=123 Identities=11% Similarity=-0.074 Sum_probs=84.3
Q ss_pred cEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHhc----C----CeeEEEcccccCCC----CCCceeEEEE
Q 043503 278 RIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIASR----G----LISMHISVSQRLPF----FENTLDIVHS 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~r----g----~i~~~~~d~~~lpf----~d~sfDlV~~ 344 (430)
.+|||+|||+|.++..+++.| .+|+++ |+++.+++.|+++ | .+.++.+|+..+.. .+.+||+|++
T Consensus 222 ~~VLDl~cG~G~~sl~la~~g~~~V~~v--D~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~ 299 (396)
T 3c0k_A 222 KRVLNCFSYTGGFAVSALMGGCSQVVSV--DTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_dssp CEEEEESCTTCSHHHHHHHTTCSEEEEE--ESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEeeccCCHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence 456999999999999999986 489988 6677777776644 4 36888998766431 1468999999
Q ss_pred ccchhhc------CCchhHHHHHHHHHHhccCCcEEEEeeccccCc--CcHHHHHHHHHHcCCEEE
Q 043503 345 MHVLSNW------IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS--QLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 345 ~~~L~~~------~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~--~~~~~~~~ll~~~Gfk~l 402 (430)
....... ........++.++.++|+|||+++++.....-. ...+.+.+.+.+.|++..
T Consensus 300 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~ 365 (396)
T 3c0k_A 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQ 365 (396)
T ss_dssp CCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEE
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 6432110 001247789999999999999999865221111 123345557778886543
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=3.2e-08 Score=100.15 Aligned_cols=121 Identities=12% Similarity=0.012 Sum_probs=83.9
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCC----CCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPF----FENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf----~d~sfDlV~~~~~ 347 (430)
.+|||+|||+|.++..+++.+.+|+++ |+++.+++.++++ |. +.++.+|+..+.. .+++||+|++...
T Consensus 211 ~~VLDlg~G~G~~~~~la~~~~~v~~v--D~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP 288 (382)
T 1wxx_A 211 ERALDVFSYAGGFALHLALGFREVVAV--DSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 288 (382)
T ss_dssp EEEEEETCTTTHHHHHHHHHEEEEEEE--ESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CeEEEeeeccCHHHHHHHHhCCEEEEE--ECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCC
Confidence 467999999999999999887788888 6678888777654 43 7899998766431 2578999999532
Q ss_pred hhhcCCc------hhHHHHHHHHHHhccCCcEEEEeeccccCcC--cHHHHHHHHHHcCCE
Q 043503 348 LSNWIPD------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ--LNETYVPMLDRIGFK 400 (430)
Q Consensus 348 L~~~~~d------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~--~~~~~~~ll~~~Gfk 400 (430)
....... .....++.++.++|+|||.++++........ ..+.+.+.+.+.|.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 349 (382)
T 1wxx_A 289 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRL 349 (382)
T ss_dssp CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence 2110000 2356789999999999999998753321111 223455567777754
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.3e-08 Score=96.51 Aligned_cols=88 Identities=13% Similarity=0.076 Sum_probs=69.5
Q ss_pred ccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----------CCeeEEEcccccCCCCCCceeEEEEcc
Q 043503 277 IRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----------GLISMHISVSQRLPFFENTLDIVHSMH 346 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~lpf~d~sfDlV~~~~ 346 (430)
.++|||||||+|.++..+++.+.+|+++ |+++.+++.|+++ ..+.++.+|+..+. ++||+|++..
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~~~~v~~v--eid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~ 147 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKYDTHIDFV--QADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ 147 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTSSCEEEEE--CSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS
T ss_pred CCEEEEEeCCcCHHHHHHHhCCCEEEEE--ECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC
Confidence 3578999999999999998876677877 6778888777643 24788888887654 7899999951
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
.+ ...++.++.++|+|||.+++.
T Consensus 148 ------~d--p~~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 148 ------EP--DIHRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp ------CC--CHHHHHHHHTTEEEEEEEEEE
T ss_pred ------CC--hHHHHHHHHHhcCCCcEEEEE
Confidence 22 234899999999999999885
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.6e-08 Score=96.75 Aligned_cols=90 Identities=20% Similarity=0.238 Sum_probs=64.1
Q ss_pred ccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 277 IRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
..+|||+|||+|.++..+++++.+|+++ |+++.+++.++++ + .+.++.+|+..+++ .+||+|+++... +
T Consensus 43 ~~~VLDiG~G~G~lt~~La~~~~~v~~v--Di~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~--~~~D~Vv~n~py-~ 117 (299)
T 2h1r_A 43 SDIVLEIGCGTGNLTVKLLPLAKKVITI--DIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF--PKFDVCTANIPY-K 117 (299)
T ss_dssp TCEEEEECCTTSTTHHHHTTTSSEEEEE--CSCHHHHHHHHHHHHHTTCCCEEC----CCSSCC--CCCSEEEEECCG-G
T ss_pred cCEEEEEcCcCcHHHHHHHhcCCEEEEE--ECCHHHHHHHHHHHHHcCCCceEEEECchhhCCc--ccCCEEEEcCCc-c
Confidence 3467999999999999999998899998 6778888777654 3 47888999888775 379999996554 4
Q ss_pred cCCchhHHHHH---------------HHHHHhccCCc
Q 043503 351 WIPDSMLEFTL---------------YDIYRLLRPGG 372 (430)
Q Consensus 351 ~~~d~~l~~~L---------------~ei~RvLrPGG 372 (430)
+..+ .+..++ ..+.|+++|+|
T Consensus 118 ~~~~-~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 118 ISSP-LIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp GHHH-HHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred cccH-HHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 4322 233344 34678888877
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.68 E-value=4.3e-08 Score=99.53 Aligned_cols=122 Identities=14% Similarity=-0.015 Sum_probs=83.0
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCC----CCCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPF----FENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf----~d~sfDlV~~~ 345 (430)
.+|||+|||+|.++..+++.|. +|+++ |+++.+++.++++ | .+.++.+|+..+.. .+++||+|++.
T Consensus 219 ~~VLDl~~G~G~~~~~la~~g~~~v~~v--D~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 219 DRVLDVFTYTGGFAIHAAIAGADEVIGI--DKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp CEEEETTCTTTHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEecCCCCHHHHHHHHCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 4579999999999999999865 89998 6678777766544 4 47889998765431 25789999995
Q ss_pred cchhhcCC------chhHHHHHHHHHHhccCCcEEEEeeccccCc-C-cHHHHHHHHHHcCCEE
Q 043503 346 HVLSNWIP------DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-Q-LNETYVPMLDRIGFKK 401 (430)
Q Consensus 346 ~~L~~~~~------d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-~-~~~~~~~ll~~~Gfk~ 401 (430)
........ ......++.++.++|+|||.+++......-. + ..+.+...+.+.|...
T Consensus 297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 360 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFL 360 (396)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 33211000 0236778999999999999998875321111 1 2233445666677554
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=5.8e-08 Score=106.07 Aligned_cols=120 Identities=14% Similarity=0.096 Sum_probs=84.4
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C----CeeEEEccccc-CCCCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G----LISMHISVSQR-LPFFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g----~i~~~~~d~~~-lpf~d~sfDlV~~~~~ 347 (430)
.+|||+|||+|.++..++..|. +|+++ |+++.+++.++++ | .+.++++|+.. ++..+++||+|++...
T Consensus 541 ~~VLDlg~GtG~~sl~aa~~ga~~V~aV--D~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 541 KDFLNLFSYTGSATVHAGLGGARSTTTV--DMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CcEEEeeechhHHHHHHHHCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 3569999999999999998876 58888 7778888877654 3 37889998765 4445678999999543
Q ss_pred hhh--------cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 348 LSN--------WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 348 L~~--------~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
... +........++.++.++|+|||+|+++.-...-. . -.+.+.+.||+...
T Consensus 619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~-~---~~~~l~~~g~~~~~ 678 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFR-M---DLDGLAKLGLKAQE 678 (703)
T ss_dssp SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCC-C---CHHHHHHTTEEEEE
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-c---CHHHHHHcCCceee
Confidence 210 0111236678999999999999999864221111 1 13567788987544
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-07 Score=89.07 Aligned_cols=78 Identities=14% Similarity=0.220 Sum_probs=60.0
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCC-Cce
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFE-NTL 339 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d-~sf 339 (430)
++.++.........+|||+|||+|.++..+++++.+|+++ |+++.+++.++++ +.+.++.+|+..+++++ ..|
T Consensus 19 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~ 96 (244)
T 1qam_A 19 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAI--EIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY 96 (244)
T ss_dssp HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEE--CSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC
T ss_pred HHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEE--ECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCe
Confidence 4555555443444567999999999999999999999998 7778898888765 35899999999988764 456
Q ss_pred eEEEEc
Q 043503 340 DIVHSM 345 (430)
Q Consensus 340 DlV~~~ 345 (430)
.|+++
T Consensus 97 -~vv~n 101 (244)
T 1qam_A 97 -KIFGN 101 (244)
T ss_dssp -EEEEE
T ss_pred -EEEEe
Confidence 45553
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.5e-07 Score=91.13 Aligned_cols=137 Identities=9% Similarity=0.115 Sum_probs=90.9
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFEN 337 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d~ 337 (430)
.+.++...+. ..+|||+|||+|.++..++.. ..+++++ |+++.+++.++++ |. ..+.+.|...-+ +..
T Consensus 123 Y~~i~~~i~~--p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~--DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~ 197 (281)
T 3lcv_B 123 YRELFRHLPR--PNTLRDLACGLNPLAAPWMGLPAETVYIAS--DIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDE 197 (281)
T ss_dssp HHHHGGGSCC--CSEEEETTCTTGGGCCTTTTCCTTCEEEEE--ESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCS
T ss_pred HHHHHhccCC--CceeeeeccCccHHHHHHHhhCCCCEEEEE--eCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCC
Confidence 3445555432 456799999999999999877 5789998 5558888877665 54 566677765433 567
Q ss_pred ceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeec--cc-cCcCcHH----HHHHHHHHcCCEEEEEEecc
Q 043503 338 TLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF--FC-FGSQLNE----TYVPMLDRIGFKKLRWNVGM 408 (430)
Q Consensus 338 sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f--~~-~~~~~~~----~~~~ll~~~Gfk~l~~~~~~ 408 (430)
.||+|++.-++++ .+++.....+ ++...|+|||.|+--.- +. ....+.+ .|...+...|....+.+.+.
T Consensus 198 ~~DvaL~lkti~~-Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~~~n 273 (281)
T 3lcv_B 198 PADVTLLLKTLPC-LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLEIGN 273 (281)
T ss_dssp CCSEEEETTCHHH-HHHHSTTHHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CcchHHHHHHHHH-hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeeeecC
Confidence 8999999888855 4332233344 99999999998875432 11 1112333 45555666888777766554
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.6e-07 Score=93.65 Aligned_cols=116 Identities=14% Similarity=0.049 Sum_probs=78.8
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcC--
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWI-- 352 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~-- 352 (430)
.+|||+|||+|.++..++++ +.+++++|+| +.+.+.| ..+.++++|+...+ ++++||+|+++.......
T Consensus 41 ~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~--~~~~~~a---~~~~~~~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~ 114 (421)
T 2ih2_A 41 GRVLEPACAHGPFLRAFREAHGTAYRFVGVEID--PKALDLP---PWAEGILADFLLWE-PGEAFDLILGNPPYGIVGEA 114 (421)
T ss_dssp CEEEEETCTTCHHHHHHHHHHCSCSEEEEEESC--TTTCCCC---TTEEEEESCGGGCC-CSSCEEEEEECCCCCCBSCT
T ss_pred CEEEECCCCChHHHHHHHHHhCCCCeEEEEECC--HHHHHhC---CCCcEEeCChhhcC-ccCCCCEEEECcCccCcccc
Confidence 36799999999999999985 5789999665 4444444 34788899987765 357899999964332111
Q ss_pred -------Cch-----------------hHHHHHHHHHHhccCCcEEEEeeccc-cCcCcHHHHHHHHHHcCC
Q 043503 353 -------PDS-----------------MLEFTLYDIYRLLRPGGIFWLDRFFC-FGSQLNETYVPMLDRIGF 399 (430)
Q Consensus 353 -------~d~-----------------~l~~~L~ei~RvLrPGG~lvl~~f~~-~~~~~~~~~~~ll~~~Gf 399 (430)
++. ....++..+.++|+|||.+++..... ......+.+.+.+.+.|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK 186 (421)
T ss_dssp TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE
T ss_pred cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCC
Confidence 111 12267899999999999988754221 111223567777777776
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-07 Score=97.48 Aligned_cols=111 Identities=12% Similarity=0.168 Sum_probs=77.3
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCCCceeEEEEccchhhcC
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
.+|||+|||+|.++..+++.+.+|+++ |+++.+++.|+++ |. +.++.+|+..+.. .+||+|++...... .
T Consensus 292 ~~VLDlgcG~G~~sl~la~~~~~V~gv--D~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~--~~fD~Vv~dPPr~g-~ 366 (425)
T 2jjq_A 292 EKILDMYSGVGTFGIYLAKRGFNVKGF--DSNEFAIEMARRNVEINNVDAEFEVASDREVSV--KGFDTVIVDPPRAG-L 366 (425)
T ss_dssp SEEEEETCTTTHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC--TTCSEEEECCCTTC-S
T ss_pred CEEEEeeccchHHHHHHHHcCCEEEEE--ECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc--cCCCEEEEcCCccc-h
Confidence 457999999999999999998899998 6678888777654 44 7899999887652 28999999544311 1
Q ss_pred CchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
...++..+ +.|+|||.++++ |....+.+++.. ..|++.+..
T Consensus 367 ----~~~~~~~l-~~l~p~givyvs---c~p~tlarDl~~----l~y~l~~~~ 407 (425)
T 2jjq_A 367 ----HPRLVKRL-NREKPGVIVYVS---CNPETFARDVKM----LDYRIDEIV 407 (425)
T ss_dssp ----CHHHHHHH-HHHCCSEEEEEE---SCHHHHHHHHHH----SSCCEEEEE
T ss_pred ----HHHHHHHH-HhcCCCcEEEEE---CChHHHHhHHhh----CeEEEEEEE
Confidence 12344444 459999999996 433333333332 227776654
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.61 E-value=2.6e-07 Score=91.93 Aligned_cols=121 Identities=16% Similarity=0.151 Sum_probs=82.8
Q ss_pred ccEEEEEcCCccHHHHHHHHcC-------CEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCCCceeEEEE
Q 043503 277 IRIGLDIGGGTGTFAARMRERN-------VTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFENTLDIVHS 344 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g-------~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d~sfDlV~~ 344 (430)
..+|||+|||+|.++..+++.. .+++|+ |+++.+.+.|+.+ |. +.++.+|... +.++++||+|++
T Consensus 131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~Gi--Di~~~~~~~a~~n~~~~g~~~~i~~~D~l~-~~~~~~fD~Ii~ 207 (344)
T 2f8l_A 131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGV--DVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVIS 207 (344)
T ss_dssp EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEE--ESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEE
T ss_pred CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEE--ECCHHHHHHHHHHHHhCCCCceEEECCCCC-ccccCCccEEEE
Confidence 3567999999999999988762 678888 5667777776654 44 6788888654 234678999999
Q ss_pred ccchhhcCCchh----------------HHHHHHHHHHhccCCcEEEEeeccc-cCcCcHHHHHHHHHHcCCEE
Q 043503 345 MHVLSNWIPDSM----------------LEFTLYDIYRLLRPGGIFWLDRFFC-FGSQLNETYVPMLDRIGFKK 401 (430)
Q Consensus 345 ~~~L~~~~~d~~----------------l~~~L~ei~RvLrPGG~lvl~~f~~-~~~~~~~~~~~ll~~~Gfk~ 401 (430)
+..+..+ +... ...++..+.+.|+|||++++...-. ........+.+.+.+.|+..
T Consensus 208 NPPfg~~-~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~~ 280 (344)
T 2f8l_A 208 DLPVGYY-PDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIE 280 (344)
T ss_dssp ECCCSEE-SCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEE
T ss_pred CCCCCCc-CchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeEE
Confidence 8776433 2211 1258999999999999988764211 11122355666677766643
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.59 E-value=7.5e-09 Score=98.20 Aligned_cols=96 Identities=11% Similarity=0.159 Sum_probs=67.8
Q ss_pred CccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCC-CceeEEEEccchhh
Q 043503 276 TIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFE-NTLDIVHSMHVLSN 350 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d-~sfDlV~~~~~L~~ 350 (430)
...+|||+|||+|.++..+++++.+|+++ |+++.+++.++++ ..+.++.+|+..+++++ ++| .|+++... +
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~~~~~~v~~i--d~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py-~ 104 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLAKISKQVTSI--ELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGNIPY-H 104 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHSSEEEES--SSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEECCS-S
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCCeEEEE--ECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEeCCc-c
Confidence 34567999999999999999999899988 5566666666544 23788899999988764 689 66664322 1
Q ss_pred cCCchhH----------HHHH----HHHHHhccCCcEEEE
Q 043503 351 WIPDSML----------EFTL----YDIYRLLRPGGIFWL 376 (430)
Q Consensus 351 ~~~d~~l----------~~~L----~ei~RvLrPGG~lvl 376 (430)
...... ..++ ..+.|+|+|||.+.+
T Consensus 105 -~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v 143 (245)
T 1yub_A 105 -LSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL 143 (245)
T ss_dssp -SCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred -ccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence 111111 1233 669999999998754
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.5e-07 Score=88.49 Aligned_cols=96 Identities=14% Similarity=0.070 Sum_probs=70.1
Q ss_pred CccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 276 TIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
...+|||+|||+|.++..++ .+.+++++ |+++.+++.++++ |. ..+.+.|....+.+ ++||+|+..-++++
T Consensus 105 ~p~~VLDlGCG~gpLal~~~-~~~~y~a~--DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk~lh~ 180 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER-GIASVWGC--DIHQGLGDVITPFAREKDWDFTFALQDVLCAPPA-EAGDLALIFKLLPL 180 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT-TCSEEEEE--ESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCC-CBCSEEEEESCHHH
T ss_pred CCCeEEEecCCccHHHHHhc-cCCeEEEE--eCCHHHHHHHHHHHHhcCCCceEEEeecccCCCC-CCcchHHHHHHHHH
Confidence 34567999999999999988 67799998 5568888877655 43 66778888776654 48999999866643
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
..+... ....++.+.|+++|.++-.
T Consensus 181 -LE~q~~-~~~~~ll~aL~~~~vvVsf 205 (253)
T 3frh_A 181 -LEREQA-GSAMALLQSLNTPRMAVSF 205 (253)
T ss_dssp -HHHHST-THHHHHHHHCBCSEEEEEE
T ss_pred -hhhhch-hhHHHHHHHhcCCCEEEEc
Confidence 322112 2344888899999887653
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.1e-07 Score=91.56 Aligned_cols=82 Identities=11% Similarity=0.192 Sum_probs=64.0
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCCCcee
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFENTLD 340 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d~sfD 340 (430)
++.++.........+|||||||+|.++..+++++.+|+++ |+++.+++.++++ +.+.++.+|+..+++++.+||
T Consensus 39 ~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aV--Eid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD 116 (295)
T 3gru_A 39 VNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVI--EIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFN 116 (295)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEE--ESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCS
T ss_pred HHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEE--ECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCcc
Confidence 3444443333334567999999999999999999999999 5557788777655 568999999999988888899
Q ss_pred EEEEccch
Q 043503 341 IVHSMHVL 348 (430)
Q Consensus 341 lV~~~~~L 348 (430)
+|+++...
T Consensus 117 ~Iv~NlPy 124 (295)
T 3gru_A 117 KVVANLPY 124 (295)
T ss_dssp EEEEECCG
T ss_pred EEEEeCcc
Confidence 99997554
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.6e-07 Score=92.12 Aligned_cols=125 Identities=10% Similarity=0.061 Sum_probs=82.5
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCC--CCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLP--FFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lp--f~d 336 (430)
++.++....... .+|||+|||+|.++..+++...+|+++ |+++.+++.|+++ |. +.++.+|+..+. +..
T Consensus 203 ~~~~~~~~~~~~-~~vLDl~cG~G~~~l~la~~~~~V~gv--d~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~ 279 (369)
T 3bt7_A 203 LEWALDVTKGSK-GDLLELYCGNGNFSLALARNFDRVLAT--EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG 279 (369)
T ss_dssp HHHHHHHTTTCC-SEEEEESCTTSHHHHHHGGGSSEEEEE--CCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSS
T ss_pred HHHHHHHhhcCC-CEEEEccCCCCHHHHHHHhcCCEEEEE--ECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhh
Confidence 444444443222 457999999999999999877899998 7778888776643 43 788988876542 221
Q ss_pred --------------CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEE
Q 043503 337 --------------NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 337 --------------~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
.+||+|+...... .+..++.+.|+|+|.+++.. |......+++..+.. ||++.
T Consensus 280 ~~~~~~l~~~~~~~~~fD~Vv~dPPr~---------g~~~~~~~~l~~~g~ivyvs--c~p~t~ard~~~l~~--~y~~~ 346 (369)
T 3bt7_A 280 VREFNRLQGIDLKSYQCETIFVDPPRS---------GLDSETEKMVQAYPRILYIS--CNPETLCKNLETLSQ--THKVE 346 (369)
T ss_dssp CCCCTTGGGSCGGGCCEEEEEECCCTT---------CCCHHHHHHHTTSSEEEEEE--SCHHHHHHHHHHHHH--HEEEE
T ss_pred ccccccccccccccCCCCEEEECcCcc---------ccHHHHHHHHhCCCEEEEEE--CCHHHHHHHHHHHhh--CcEEE
Confidence 3799999843221 12345667777888877653 544444455555442 68877
Q ss_pred EEE
Q 043503 403 RWN 405 (430)
Q Consensus 403 ~~~ 405 (430)
+..
T Consensus 347 ~~~ 349 (369)
T 3bt7_A 347 RLA 349 (369)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.36 E-value=9.4e-07 Score=89.83 Aligned_cols=109 Identities=11% Similarity=0.143 Sum_probs=76.6
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHcC----------------------------------------CEEEEEe
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRERN----------------------------------------VTIITTS 305 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g----------------------------------------~~Vv~vd 305 (430)
..++..........+||.|||+|++++.++..+ .+|+|+
T Consensus 185 a~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~Gv- 263 (385)
T 3ldu_A 185 AGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGY- 263 (385)
T ss_dssp HHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEE-
T ss_pred HHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEE-
Confidence 344433332233456999999999999988762 468888
Q ss_pred cCCChhHHHHHHhc----CC---eeEEEcccccCCCCCCceeEEEEccchhhcC-CchhHHHHHHHHHHhccC--CcEEE
Q 043503 306 LNLDGPFNSFIASR----GL---ISMHISVSQRLPFFENTLDIVHSMHVLSNWI-PDSMLEFTLYDIYRLLRP--GGIFW 375 (430)
Q Consensus 306 iD~s~~~le~a~~r----g~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~-~d~~l~~~L~ei~RvLrP--GG~lv 375 (430)
|+++.+++.|+++ |. +.+.++|+..++.+ .+||+|+++..+..-. ....+..+..++.++|++ ||.++
T Consensus 264 -Did~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 341 (385)
T 3ldu_A 264 -DIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYY 341 (385)
T ss_dssp -ESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEE
T ss_pred -ECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 5668888777654 54 88999999888754 5899999976653211 123466778888888887 88877
Q ss_pred Ee
Q 043503 376 LD 377 (430)
Q Consensus 376 l~ 377 (430)
+.
T Consensus 342 ii 343 (385)
T 3ldu_A 342 LI 343 (385)
T ss_dssp EE
T ss_pred EE
Confidence 74
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-06 Score=85.15 Aligned_cols=68 Identities=10% Similarity=0.131 Sum_probs=56.8
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc---CCeeEEEcccccCCCCCC-ceeEEEEccch
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR---GLISMHISVSQRLPFFEN-TLDIVHSMHVL 348 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r---g~i~~~~~d~~~lpf~d~-sfDlV~~~~~L 348 (430)
+|||||||+|.++..+++++.+|+++ |+++.|++.++++ +.+.++.+|+..+++++. .+|.|+++...
T Consensus 49 ~VLEIG~G~G~lt~~L~~~~~~V~av--Eid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~iv~NlPy 120 (271)
T 3fut_A 49 PVFEVGPGLGALTRALLEAGAEVTAI--EKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSLLVANLPY 120 (271)
T ss_dssp CEEEECCTTSHHHHHHHHTTCCEEEE--ESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEEEEEEECS
T ss_pred eEEEEeCchHHHHHHHHHcCCEEEEE--ECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccEEEecCcc
Confidence 46999999999999999999999998 5568888888765 458999999998887643 68999996544
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.35 E-value=9.8e-07 Score=90.01 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=70.6
Q ss_pred cEEEEEcCCccHHHHHHHHcC----------------------------------------CEEEEEecCCChhHHHHHH
Q 043503 278 RIGLDIGGGTGTFAARMRERN----------------------------------------VTIITTSLNLDGPFNSFIA 317 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g----------------------------------------~~Vv~vdiD~s~~~le~a~ 317 (430)
..+||.+||+|++++.++..+ .+|+++ |+++.+++.|+
T Consensus 203 ~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~Gv--Did~~al~~Ar 280 (393)
T 3k0b_A 203 RPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGG--DIDARLIEIAK 280 (393)
T ss_dssp SCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE--ESCHHHHHHHH
T ss_pred CeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEE--ECCHHHHHHHH
Confidence 456999999999998888652 358888 66688887776
Q ss_pred hc----CC---eeEEEcccccCCCCCCceeEEEEccchhhcC-CchhHHHHHHHHHHhccC--CcEEEEe
Q 043503 318 SR----GL---ISMHISVSQRLPFFENTLDIVHSMHVLSNWI-PDSMLEFTLYDIYRLLRP--GGIFWLD 377 (430)
Q Consensus 318 ~r----g~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~-~d~~l~~~L~ei~RvLrP--GG~lvl~ 377 (430)
++ |. +.+.++|+..++.+ .+||+|+++..+..-+ ....+..+..++.++||+ ||.+++.
T Consensus 281 ~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii 349 (393)
T 3k0b_A 281 QNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVL 349 (393)
T ss_dssp HHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEE
T ss_pred HHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEE
Confidence 54 43 88999999888764 5899999985542111 112356677777777776 8888774
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.1e-06 Score=87.39 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=72.9
Q ss_pred cEEEEEcCCccHHHHHHHHcC----------------------------------------CEEEEEecCCChhHHHHHH
Q 043503 278 RIGLDIGGGTGTFAARMRERN----------------------------------------VTIITTSLNLDGPFNSFIA 317 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g----------------------------------------~~Vv~vdiD~s~~~le~a~ 317 (430)
..+||.+||+|++++.++..+ .+|+++ |+++.+++.|+
T Consensus 196 ~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~Gv--Did~~al~~Ar 273 (384)
T 3ldg_A 196 KPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGF--DFDGRMVEIAR 273 (384)
T ss_dssp SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE--ESCHHHHHHHH
T ss_pred CeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEE--ECCHHHHHHHH
Confidence 446999999999998888652 358888 56688887776
Q ss_pred hc----CC---eeEEEcccccCCCCCCceeEEEEccchhhcC-CchhHHHHHHHHHHhccC--CcEEEEe
Q 043503 318 SR----GL---ISMHISVSQRLPFFENTLDIVHSMHVLSNWI-PDSMLEFTLYDIYRLLRP--GGIFWLD 377 (430)
Q Consensus 318 ~r----g~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~-~d~~l~~~L~ei~RvLrP--GG~lvl~ 377 (430)
++ |. +.+.++|+..++.+ .+||+|+++..+..-+ ....+..+..++.+.||+ ||.+++.
T Consensus 274 ~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ii 342 (384)
T 3ldg_A 274 KNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFIL 342 (384)
T ss_dssp HHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred HHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 54 43 88999999988765 4899999985553222 224567788888888887 8888774
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.33 E-value=8.7e-07 Score=85.21 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=55.5
Q ss_pred ccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCC----CceeEEEEccch
Q 043503 277 IRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFE----NTLDIVHSMHVL 348 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d----~sfDlV~~~~~L 348 (430)
..+|||||||+|.++..+++++.+|+++ |+++.|++.++++ +.+.++.+|+..+++++ +.|| |+++...
T Consensus 30 ~~~VLEIG~G~G~lt~~La~~~~~V~av--Eid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~NlPY 106 (255)
T 3tqs_A 30 TDTLVEIGPGRGALTDYLLTECDNLALV--EIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPLR-VVGNLPY 106 (255)
T ss_dssp TCEEEEECCTTTTTHHHHTTTSSEEEEE--ECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSSCEE-EEEECCH
T ss_pred cCEEEEEcccccHHHHHHHHhCCEEEEE--ECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCCCeE-EEecCCc
Confidence 3457999999999999999999999998 6668888888765 45899999999887643 5688 6665443
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-06 Score=89.62 Aligned_cols=98 Identities=12% Similarity=0.033 Sum_probs=69.9
Q ss_pred cEEEEEcCCccHHHHHHHHc---------------CCEEEEEecCCChhHHHHHHhc----C----CeeEEEcccccCCC
Q 043503 278 RIGLDIGGGTGTFAARMRER---------------NVTIITTSLNLDGPFNSFIASR----G----LISMHISVSQRLPF 334 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---------------g~~Vv~vdiD~s~~~le~a~~r----g----~i~~~~~d~~~lpf 334 (430)
.+|||.|||+|.+...+++. +.+++|+ |+++.+.+.|+.+ | .+.+.++|+...+.
T Consensus 173 ~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~--Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~ 250 (445)
T 2okc_A 173 ETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGV--DNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP 250 (445)
T ss_dssp CCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEE--ESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred CEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEE--eCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence 34699999999999888763 3678888 5557777666543 4 35788888766654
Q ss_pred CCCceeEEEEccchhhcCCc--------------hhHHHHHHHHHHhccCCcEEEEee
Q 043503 335 FENTLDIVHSMHVLSNWIPD--------------SMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~~d--------------~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
. .+||+|+++..+...... .....++..+.+.|+|||++.+..
T Consensus 251 ~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 251 S-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp S-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 3 489999998666431110 012368999999999999987654
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.29 E-value=8.5e-06 Score=80.41 Aligned_cols=139 Identities=11% Similarity=0.030 Sum_probs=85.5
Q ss_pred CCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcc
Q 043503 258 NGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL--ISMHISV 328 (430)
Q Consensus 258 ~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d 328 (430)
+......+..++...++. +|||+|||+|..+..+++. ..+|+++ |+++.+++.++++ |. +.++.+|
T Consensus 87 Qd~~s~l~~~~l~~~~g~---~VLDlcaG~G~kt~~la~~~~~~g~V~a~--D~~~~~l~~~~~n~~r~g~~~v~~~~~D 161 (309)
T 2b9e_A 87 QDRASCLPAMLLDPPPGS---HVIDACAAPGNKTSHLAALLKNQGKIFAF--DLDAKRLASMATLLARAGVSCCELAEED 161 (309)
T ss_dssp CCTGGGHHHHHHCCCTTC---EEEESSCTTCHHHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred ECHHHHHHHHHhCCCCCC---EEEEeCCChhHHHHHHHHHhCCCCEEEEE--eCCHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 333344455566555544 4699999999999999985 3689988 5567777666544 54 7888999
Q ss_pred cccCCCCC---CceeEEEEc------cchhh-----c----CCch------hHHHHHHHHHHhccCCcEEEEeeccccCc
Q 043503 329 SQRLPFFE---NTLDIVHSM------HVLSN-----W----IPDS------MLEFTLYDIYRLLRPGGIFWLDRFFCFGS 384 (430)
Q Consensus 329 ~~~lpf~d---~sfDlV~~~------~~L~~-----~----~~d~------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~ 384 (430)
+..++..+ .+||.|++. ..+.. | .++. ....+|..+.+.|+ ||+++.++-.....
T Consensus 162 ~~~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~ 240 (309)
T 2b9e_A 162 FLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQE 240 (309)
T ss_dssp GGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGG
T ss_pred hHhcCccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChH
Confidence 87775432 579999972 11211 0 1110 12346777888886 99988765322222
Q ss_pred CcHHHHHHHHHHc-C-CEEE
Q 043503 385 QLNETYVPMLDRI-G-FKKL 402 (430)
Q Consensus 385 ~~~~~~~~ll~~~-G-fk~l 402 (430)
+-.+.+...+++. + |+.+
T Consensus 241 Ene~~v~~~l~~~~~~~~~~ 260 (309)
T 2b9e_A 241 ENEDVVRDALQQNPGAFRLA 260 (309)
T ss_dssp GTHHHHHHHHTTSTTTEEEC
T ss_pred HhHHHHHHHHHhCCCcEEEe
Confidence 2234566666654 4 6654
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.9e-06 Score=83.62 Aligned_cols=126 Identities=14% Similarity=0.033 Sum_probs=72.7
Q ss_pred cEEEEEcCCccHHHHHHHHc-CC-EEEEEecCCChhHHHHHHh---cC-CeeEEEcccccCCCCCCceeEEEEccchh--
Q 043503 278 RIGLDIGGGTGTFAARMRER-NV-TIITTSLNLDGPFNSFIAS---RG-LISMHISVSQRLPFFENTLDIVHSMHVLS-- 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~---rg-~i~~~~~d~~~lpf~d~sfDlV~~~~~L~-- 349 (430)
.+|||+|||+|.|+..++++ ++ .+.++|+.. .+...... .| .+..+..+++...++++.||+|+|.....
T Consensus 76 ~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGv--Dl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apnsG 153 (277)
T 3evf_A 76 GRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR--DGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESSS 153 (277)
T ss_dssp EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC--TTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCCCS
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCcceeEEEec--cCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccCcC
Confidence 46799999999999998876 44 455553321 11000000 11 13334555555567788999999964331
Q ss_pred -hcCCchhHHHHHHHHHHhccCC-cEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEec
Q 043503 350 -NWIPDSMLEFTLYDIYRLLRPG-GIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 350 -~~~~d~~l~~~L~ei~RvLrPG-G~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
++.+......+|..+.++|+|| |.|++.-|-..+++..+ +...+++. |+.+....+
T Consensus 154 ~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~-l~~~lk~~-F~~V~~~KP 211 (277)
T 3evf_A 154 SSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLE-KLELLQRR-FGGTVIRNP 211 (277)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHH-HHHHHHHH-HCCEEECCT
T ss_pred chHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHH-HHHHHHHh-cCCEEEEeC
Confidence 1332212223578889999999 99999655533444333 33333332 555554433
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.6e-05 Score=76.01 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=58.1
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHhc--CCeeEEEcccccCCCCCCc-ee
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIASR--GLISMHISVSQRLPFFENT-LD 340 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~r--g~i~~~~~d~~~lpf~d~s-fD 340 (430)
++.++.........+|||||||+|.++..+++++ .+|+++ |+++.+++.++++ ..+.++.+|+..+++++.. ..
T Consensus 20 ~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~av--Eid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 20 LKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVI--ELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEE--CCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEE--ECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 3444444443344567999999999999999995 899998 6778999888876 3378999999998876421 22
Q ss_pred EEEEcc
Q 043503 341 IVHSMH 346 (430)
Q Consensus 341 lV~~~~ 346 (430)
.|+++.
T Consensus 98 ~vv~Nl 103 (249)
T 3ftd_A 98 KVVGNL 103 (249)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 555543
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=4.9e-06 Score=84.43 Aligned_cols=91 Identities=15% Similarity=0.089 Sum_probs=66.5
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHH----hc---------------CC--eeEEEcccccCCC
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIA----SR---------------GL--ISMHISVSQRLPF 334 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~----~r---------------g~--i~~~~~d~~~lpf 334 (430)
.+|||+|||+|.++..++.+ +.+|+++ |+++.+++.++ .+ |. +.++.+|+..+..
T Consensus 49 ~~VLDl~aGtG~~~l~~a~~~~~~~V~av--Di~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 49 KIVLDALSATGIRGIRFALETPAEEVWLN--DISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp SEEEESSCTTSHHHHHHHHHSSCSEEEEE--ESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CEEEECCCchhHHHHHHHHhCCCCeEEEE--ECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 34699999999999999987 4688888 55566665554 33 43 7788888765431
Q ss_pred -CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 335 -FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 335 -~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
..+.||+|+... . . ....++..+.+.|+|||.++++
T Consensus 127 ~~~~~fD~I~lDP-~---~---~~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 127 ERHRYFHFIDLDP-F---G---SPMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp HSTTCEEEEEECC-S---S---CCHHHHHHHHHHEEEEEEEEEE
T ss_pred hccCCCCEEEeCC-C---C---CHHHHHHHHHHhcCCCCEEEEE
Confidence 145799999732 2 1 1356889999999999998886
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.04 E-value=4.5e-06 Score=81.29 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=53.9
Q ss_pred ccEEEEEcCCccHHHHHHHHcCCE----EEEEecCCChhHHHHHHhc--CCeeEEEcccccCCCCCC------ceeEEEE
Q 043503 277 IRIGLDIGGGTGTFAARMRERNVT----IITTSLNLDGPFNSFIASR--GLISMHISVSQRLPFFEN------TLDIVHS 344 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~~----Vv~vdiD~s~~~le~a~~r--g~i~~~~~d~~~lpf~d~------sfDlV~~ 344 (430)
..+|||||||+|.++..+++++.. |+++ |+++.|++.++++ ..+.++++|+..+++++- ..+.|++
T Consensus 43 ~~~VLEIG~G~G~lt~~La~~~~~~~~~V~av--Did~~~l~~a~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~vv~ 120 (279)
T 3uzu_A 43 GERMVEIGPGLGALTGPVIARLATPGSPLHAV--ELDRDLIGRLEQRFGELLELHAGDALTFDFGSIARPGDEPSLRIIG 120 (279)
T ss_dssp TCEEEEECCTTSTTHHHHHHHHCBTTBCEEEE--ECCHHHHHHHHHHHGGGEEEEESCGGGCCGGGGSCSSSSCCEEEEE
T ss_pred cCEEEEEccccHHHHHHHHHhCCCcCCeEEEE--ECCHHHHHHHHHhcCCCcEEEECChhcCChhHhcccccCCceEEEE
Confidence 345799999999999999998766 9998 6668899888776 458999999998886532 2346666
Q ss_pred ccch
Q 043503 345 MHVL 348 (430)
Q Consensus 345 ~~~L 348 (430)
+...
T Consensus 121 NlPY 124 (279)
T 3uzu_A 121 NLPY 124 (279)
T ss_dssp ECCH
T ss_pred ccCc
Confidence 5433
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=3.2e-05 Score=78.62 Aligned_cols=102 Identities=17% Similarity=0.140 Sum_probs=63.1
Q ss_pred cEEEEEcCCccHHHHHHHHc-------------------CCEEEEEecCCC---------hhHHHHH-HhcCC---eeEE
Q 043503 278 RIGLDIGGGTGTFAARMRER-------------------NVTIITTSLNLD---------GPFNSFI-ASRGL---ISMH 325 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-------------------g~~Vv~vdiD~s---------~~~le~a-~~rg~---i~~~ 325 (430)
-+|+|+||++|..+..+... ..+|...|+-.. +.+.+.. ++.|. .-|+
T Consensus 54 ~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f~ 133 (384)
T 2efj_A 54 FKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLI 133 (384)
T ss_dssp EEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEEE
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceEE
Confidence 35699999999888776654 134445533110 1122222 22232 2344
Q ss_pred Ecc---cccCCCCCCceeEEEEccchhhcCCch--h-----------------------------------HHHHHHHHH
Q 043503 326 ISV---SQRLPFFENTLDIVHSMHVLSNWIPDS--M-----------------------------------LEFTLYDIY 365 (430)
Q Consensus 326 ~~d---~~~lpf~d~sfDlV~~~~~L~~~~~d~--~-----------------------------------l~~~L~ei~ 365 (430)
.+. +..-.||++++|+|+++.++ ||+.+. . +..+|.-..
T Consensus 134 ~gvpgSFy~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 134 GAMPGSFYSRLFPEESMHFLHSCYCL-HWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EECCSCTTSCCSCTTCEEEEEEESCT-TBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecchhhhhccCCCCceEEEEeccee-eecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 33345889999999999999 897431 1 112366679
Q ss_pred HhccCCcEEEEeecc
Q 043503 366 RLLRPGGIFWLDRFF 380 (430)
Q Consensus 366 RvLrPGG~lvl~~f~ 380 (430)
+.|+|||.+++.-..
T Consensus 213 ~eL~pGG~mvl~~~g 227 (384)
T 2efj_A 213 EELISRGRMLLTFIC 227 (384)
T ss_dssp HHEEEEEEEEEEEEC
T ss_pred HHhccCCeEEEEEec
Confidence 999999999986543
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.00 E-value=7.4e-06 Score=78.74 Aligned_cols=69 Identities=14% Similarity=0.075 Sum_probs=54.4
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCCh-------hHHHHHHhc-------CCeeEEEcccccC-C-CCC--Cce
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDG-------PFNSFIASR-------GLISMHISVSQRL-P-FFE--NTL 339 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~-------~~le~a~~r-------g~i~~~~~d~~~l-p-f~d--~sf 339 (430)
.+|||+|||+|.++..++..+.+|+++ |+++ .+++.++++ +.+.++.+|+..+ + +++ ++|
T Consensus 85 ~~VLDlgcG~G~~a~~lA~~g~~V~~v--D~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~f 162 (258)
T 2r6z_A 85 PTVWDATAGLGRDSFVLASLGLTVTAF--EQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKP 162 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHTTCCEEEE--ECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCC
T ss_pred CeEEEeeCccCHHHHHHHHhCCEEEEE--ECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCc
Confidence 356999999999999999999999998 6667 777776543 3388999998764 3 444 789
Q ss_pred eEEEEccch
Q 043503 340 DIVHSMHVL 348 (430)
Q Consensus 340 DlV~~~~~L 348 (430)
|+|++...+
T Consensus 163 D~V~~dP~~ 171 (258)
T 2r6z_A 163 DIVYLDPMY 171 (258)
T ss_dssp SEEEECCCC
T ss_pred cEEEECCCC
Confidence 999996555
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.00 E-value=8.6e-06 Score=82.57 Aligned_cols=51 Identities=25% Similarity=0.336 Sum_probs=40.0
Q ss_pred ccccCCCCCCceeEEEEccchhhcCCc------------------------------------hhHHHHHHHHHHhccCC
Q 043503 328 VSQRLPFFENTLDIVHSMHVLSNWIPD------------------------------------SMLEFTLYDIYRLLRPG 371 (430)
Q Consensus 328 d~~~lpf~d~sfDlV~~~~~L~~~~~d------------------------------------~~l~~~L~ei~RvLrPG 371 (430)
.+..-.||+++||+|+++.++ ||+.+ .++..+|+..+|.|+||
T Consensus 140 SFy~rlfP~~S~d~v~Ss~aL-HWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pG 218 (374)
T 3b5i_A 140 SFYRRLFPARTIDFFHSAFSL-HWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRG 218 (374)
T ss_dssp CTTSCCSCTTCEEEEEEESCT-TBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred hhhcccCCCcceEEEEeccee-eeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 343345889999999999999 89752 13556799999999999
Q ss_pred cEEEEeec
Q 043503 372 GIFWLDRF 379 (430)
Q Consensus 372 G~lvl~~f 379 (430)
|.++++-.
T Consensus 219 G~mvl~~~ 226 (374)
T 3b5i_A 219 GAMFLVCL 226 (374)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEe
Confidence 99998643
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.1e-05 Score=86.77 Aligned_cols=97 Identities=12% Similarity=0.180 Sum_probs=65.8
Q ss_pred CCccEEEEEcCCccHH---HHHHHHc-C--CEEEEEecCCChhH---HHHHHhcCC---eeEEEcccccCCCCCCceeEE
Q 043503 275 GTIRIGLDIGGGTGTF---AARMRER-N--VTIITTSLNLDGPF---NSFIASRGL---ISMHISVSQRLPFFENTLDIV 342 (430)
Q Consensus 275 ~~ir~VLDIGcGtG~~---a~~La~~-g--~~Vv~vdiD~s~~~---le~a~~rg~---i~~~~~d~~~lpf~d~sfDlV 342 (430)
.+..+|||+|||+|.+ ++..+++ + ++|+++ +.++.. ++..+++|. |.++.++.+.+..| +++|+|
T Consensus 356 ~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAV--Eknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDII 432 (637)
T 4gqb_A 356 TNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAV--EKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADII 432 (637)
T ss_dssp TCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEE--ESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEE
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEE--ECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEE
Confidence 3445789999999987 5555554 3 367888 444321 233344444 99999999998766 579999
Q ss_pred EEccchhhcCCchhHHHHHHHHHHhccCCcEEE
Q 043503 343 HSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 343 ~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lv 375 (430)
++ ..++.+...+.....+...+|.|||||.++
T Consensus 433 VS-EwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 433 VS-ELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EC-CCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EE-EcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 99 333232222234468889999999999974
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.1e-05 Score=82.26 Aligned_cols=92 Identities=12% Similarity=0.022 Sum_probs=67.3
Q ss_pred cEEEEEcCCccHHHHHHHHc--C-CEEEEEecCCChhHHHHHHhc----CC----eeEEEcccccCC--CCCCceeEEEE
Q 043503 278 RIGLDIGGGTGTFAARMRER--N-VTIITTSLNLDGPFNSFIASR----GL----ISMHISVSQRLP--FFENTLDIVHS 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g-~~Vv~vdiD~s~~~le~a~~r----g~----i~~~~~d~~~lp--f~d~sfDlV~~ 344 (430)
.+|||++||+|.++..++.+ | .+|+++ |+++...+.++++ |. +.++.+|+..+- ...+.||+|++
T Consensus 54 ~~VLDlfaGtG~~sl~aa~~~~ga~~V~av--Di~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 54 VKVADPLSASGIRAIRFLLETSCVEKAYAN--DISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp EEEEESSCTTSHHHHHHHHHCSCEEEEEEE--CSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CEEEECCCcccHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 45799999999999999985 5 478888 6667766655543 53 678888875432 12457999999
Q ss_pred ccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 345 MHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 345 ~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.. . . ....++..+.+.|+|||+++++.
T Consensus 132 DP-~---g---~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP-F---G---TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC-S---S---CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-C---c---CHHHHHHHHHHHhCCCCEEEEEe
Confidence 53 2 1 13468889999999999998864
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.4e-05 Score=85.42 Aligned_cols=98 Identities=15% Similarity=0.029 Sum_probs=67.0
Q ss_pred cEEEEEcCCccHHHHHHHHcC--------------------------------------------CEEEEEecCCChhHH
Q 043503 278 RIGLDIGGGTGTFAARMRERN--------------------------------------------VTIITTSLNLDGPFN 313 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g--------------------------------------------~~Vv~vdiD~s~~~l 313 (430)
..+||.+||+|++++.++..+ .+++|+ |+++.++
T Consensus 192 ~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~--Did~~av 269 (703)
T 3v97_A 192 TPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGS--DSDARVI 269 (703)
T ss_dssp SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE--ESCHHHH
T ss_pred CeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEE--ECCHHHH
Confidence 446999999999988877541 578888 5567777
Q ss_pred HHHHhc----CC---eeEEEcccccCC--CCCCceeEEEEccchhh-cCCchhHHHHHHH---HHHhccCCcEEEEe
Q 043503 314 SFIASR----GL---ISMHISVSQRLP--FFENTLDIVHSMHVLSN-WIPDSMLEFTLYD---IYRLLRPGGIFWLD 377 (430)
Q Consensus 314 e~a~~r----g~---i~~~~~d~~~lp--f~d~sfDlV~~~~~L~~-~~~d~~l~~~L~e---i~RvLrPGG~lvl~ 377 (430)
+.|+++ |+ +.+.++|+..+. ..+++||+|+++..... +..+..+..+... +.+.+.|||.+++.
T Consensus 270 ~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~il 346 (703)
T 3v97_A 270 QRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLF 346 (703)
T ss_dssp HHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 776654 55 789999988774 33448999999855422 1222234444444 44555689998874
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.95 E-value=9.5e-06 Score=77.77 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=50.5
Q ss_pred cEEEEEcCCccHHHHHHHHcCCE--EEEEecCCChhHHHHHHhcC----CeeEEEcccccCCCCC-----CceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVT--IITTSLNLDGPFNSFIASRG----LISMHISVSQRLPFFE-----NTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~--Vv~vdiD~s~~~le~a~~rg----~i~~~~~d~~~lpf~d-----~sfDlV~~~~ 346 (430)
.+|||||||+|.++. +. ++.+ |+++ |+++.|++.++++- .+.++.+|+..+++++ +..|.|+++.
T Consensus 23 ~~VLEIG~G~G~lt~-l~-~~~~~~v~av--Eid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~vvsNl 98 (252)
T 1qyr_A 23 QAMVEIGPGLAALTE-PV-GERLDQLTVI--ELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNL 98 (252)
T ss_dssp CCEEEECCTTTTTHH-HH-HTTCSCEEEE--CCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHTSCEEEEEEC
T ss_pred CEEEEECCCCcHHHH-hh-hCCCCeEEEE--ECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhcccCCceEEEECC
Confidence 346999999999999 65 4566 8888 77799999988762 4889999998887543 2346777754
Q ss_pred c
Q 043503 347 V 347 (430)
Q Consensus 347 ~ 347 (430)
.
T Consensus 99 P 99 (252)
T 1qyr_A 99 P 99 (252)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.92 E-value=1e-05 Score=87.53 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=65.6
Q ss_pred ccEEEEEcCCccHHHH---HHHH-cC-----------CEEEEEecCCChhHH---HHHHhcC---CeeEEEcccccCCCC
Q 043503 277 IRIGLDIGGGTGTFAA---RMRE-RN-----------VTIITTSLNLDGPFN---SFIASRG---LISMHISVSQRLPFF 335 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~---~La~-~g-----------~~Vv~vdiD~s~~~l---e~a~~rg---~i~~~~~d~~~lpf~ 335 (430)
..+|||+|||+|.+.. ..++ .+ .+|++++- ++... +....+| .|.++.++.+.+..+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEk--np~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp 487 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEK--NPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGI 487 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEEC--CHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeC--ChHHHHHHHHHHhcCCCCeEEEEeCchhhcccc
Confidence 4578999999998853 2222 12 48888844 44322 2222333 499999999988764
Q ss_pred -----CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEE
Q 043503 336 -----ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 336 -----d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lv 375 (430)
.+.+|+|++ ..+..+...+.....|..+.|.|+|||.++
T Consensus 488 ~~~~~~ekVDIIVS-ElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 488 AKDRGFEQPDIIVS-ELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHTTCCCCSEEEE-CCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cccCCCCcccEEEE-eccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 578999999 444344444446678888899999999874
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=9.9e-06 Score=79.74 Aligned_cols=67 Identities=16% Similarity=0.154 Sum_probs=53.9
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-----CCeeEEEcccccCC--CC---CCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-----GLISMHISVSQRLP--FF---ENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-----g~i~~~~~d~~~lp--f~---d~sfDlV~~~ 345 (430)
.+|||+|||+|.++..++++ +.+|+++ |.++.+++.|+++ ..+.++++|+..++ +. .++||.|++.
T Consensus 28 ~~vLD~g~G~G~~s~~la~~~~~~~Vigv--D~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl~D 105 (301)
T 1m6y_A 28 KIILDCTVGEGGHSRAILEHCPGCRIIGI--DVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMD 105 (301)
T ss_dssp CEEEETTCTTSHHHHHHHHHCTTCEEEEE--ESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred CEEEEEeCCcCHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCCCEEEEc
Confidence 45699999999999999988 5799998 6678899888765 35889999988775 12 1589999985
Q ss_pred c
Q 043503 346 H 346 (430)
Q Consensus 346 ~ 346 (430)
.
T Consensus 106 ~ 106 (301)
T 1m6y_A 106 L 106 (301)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.85 E-value=6.7e-05 Score=75.60 Aligned_cols=98 Identities=21% Similarity=0.151 Sum_probs=62.2
Q ss_pred EEEEEcCCccHHHHHHHHc------------------CCEEEEEecCCChhHHHHHHhc--C-----CeeEEEc---ccc
Q 043503 279 IGLDIGGGTGTFAARMRER------------------NVTIITTSLNLDGPFNSFIASR--G-----LISMHIS---VSQ 330 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~------------------g~~Vv~vdiD~s~~~le~a~~r--g-----~i~~~~~---d~~ 330 (430)
+|+|+||++|..+..+... .++|...|+ ..+....+... + ..-|+.+ .+.
T Consensus 54 ~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDL--p~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 54 AIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDL--PGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp CCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEEC--TTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred EEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCC--CchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 3499999999766554433 245555543 22222222111 0 1123333 344
Q ss_pred cCCCCCCceeEEEEccchhhcCCc-------------------------------hhHHHHHHHHHHhccCCcEEEEeec
Q 043503 331 RLPFFENTLDIVHSMHVLSNWIPD-------------------------------SMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 331 ~lpf~d~sfDlV~~~~~L~~~~~d-------------------------------~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
.-.||++++|+|+++.++ ||..+ .++..+|.-..+.|+|||.+++.-.
T Consensus 132 ~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 132 GRLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SCCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hccCCCCceEEEEehhhh-hhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 456899999999999999 89743 1344568889999999999998643
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.82 E-value=4.4e-05 Score=73.40 Aligned_cols=120 Identities=16% Similarity=0.160 Sum_probs=73.3
Q ss_pred ccEEEEEcCCccHHHHHHHHc--------------CCEEEEEecCC-ChhHHH-----------HHHh------------
Q 043503 277 IRIGLDIGGGTGTFAARMRER--------------NVTIITTSLNL-DGPFNS-----------FIAS------------ 318 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~--------------g~~Vv~vdiD~-s~~~le-----------~a~~------------ 318 (430)
..+|||+|+|+|..++.+++. ..++++++.++ +..++. .+++
T Consensus 61 ~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~ 140 (257)
T 2qy6_A 61 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 140 (257)
T ss_dssp EEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEE
T ss_pred CCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccch
Confidence 346799999999877665432 14778886653 223222 2221
Q ss_pred ------cCC--eeEEEccccc-CCCCC----CceeEEEEccchhh-cCCchhHHHHHHHHHHhccCCcEEEEeeccccCc
Q 043503 319 ------RGL--ISMHISVSQR-LPFFE----NTLDIVHSMHVLSN-WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS 384 (430)
Q Consensus 319 ------rg~--i~~~~~d~~~-lpf~d----~sfDlV~~~~~L~~-~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~ 384 (430)
.+. +.++.+|+.. ++.-+ ..||+|+.- .+.. -.|+--...++..+.|+|+|||.|+. |.. .
T Consensus 141 ~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD-~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t--ysa-a- 215 (257)
T 2qy6_A 141 HRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLD-GFAPAKNPDMWTQNLFNAMARLARPGGTLAT--FTS-A- 215 (257)
T ss_dssp EEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEEC-SSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE--SCC-B-
T ss_pred hheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEEC-CCCcccChhhcCHHHHHHHHHHcCCCcEEEE--EeC-C-
Confidence 122 5677888755 45322 279999983 2211 01110024689999999999999875 222 1
Q ss_pred CcHHHHHHHHHHcCCEEEEE
Q 043503 385 QLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 385 ~~~~~~~~ll~~~Gfk~l~~ 404 (430)
..+...+..+||++.+.
T Consensus 216 ---~~vrr~L~~aGF~v~~~ 232 (257)
T 2qy6_A 216 ---GFVRRGLQEAGFTMQKR 232 (257)
T ss_dssp ---HHHHHHHHHHTEEEEEE
T ss_pred ---HHHHHHHHHCCCEEEeC
Confidence 34667788899997764
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00013 Score=73.75 Aligned_cols=114 Identities=11% Similarity=0.085 Sum_probs=75.9
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhH
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSML 357 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l 357 (430)
.+|||+||.+|.|+..++++|..|+++|+ .+|.......+.+.++.+|+..+..+.+.||+|+|-.+. + .
T Consensus 213 ~~vlDLGAaPGGWT~~l~~rg~~V~aVD~---~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~-~------p 282 (375)
T 4auk_A 213 MWAVDLGACPGGWTYQLVKRNMWVYSVDN---GPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE-K------P 282 (375)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEEECS---SCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS-C------H
T ss_pred CEEEEeCcCCCHHHHHHHHCCCEEEEEEh---hhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC-C------h
Confidence 34699999999999999999999999954 345555666677899999988877677889999994333 1 3
Q ss_pred HHHHHHHHHhccC---CcEEEEeeccccCc-----CcHHHHHHHHHHcCCEE
Q 043503 358 EFTLYDIYRLLRP---GGIFWLDRFFCFGS-----QLNETYVPMLDRIGFKK 401 (430)
Q Consensus 358 ~~~L~ei~RvLrP---GG~lvl~~f~~~~~-----~~~~~~~~ll~~~Gfk~ 401 (430)
...+.-+.+.|.. ++.++...+..... +....+.+.+...||..
T Consensus 283 ~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~~ 334 (375)
T 4auk_A 283 AKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINA 334 (375)
T ss_dssp HHHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcch
Confidence 3444444444444 45444332211110 01234666788888863
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.78 E-value=3.7e-05 Score=81.46 Aligned_cols=99 Identities=13% Similarity=0.037 Sum_probs=68.3
Q ss_pred cEEEEEcCCccHHHHHHHHc--------------------CCEEEEEecCCChhHHHHHHhc----CC-------eeEEE
Q 043503 278 RIGLDIGGGTGTFAARMRER--------------------NVTIITTSLNLDGPFNSFIASR----GL-------ISMHI 326 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--------------------g~~Vv~vdiD~s~~~le~a~~r----g~-------i~~~~ 326 (430)
.+|||.|||+|.|...+++. ...++|+ |+++.+.+.|+.+ |. +.+.+
T Consensus 171 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~Gi--Eid~~~~~lA~~nl~l~gi~~~~~~~~~I~~ 248 (541)
T 2ar0_A 171 EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGL--ELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 248 (541)
T ss_dssp CCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEE--ESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred CeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEE--cCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence 34699999999998887754 1368888 5557777666543 32 46788
Q ss_pred cccccCC-CCCCceeEEEEccchhhcCC-----------chhHHHHHHHHHHhccCCcEEEEee
Q 043503 327 SVSQRLP-FFENTLDIVHSMHVLSNWIP-----------DSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 327 ~d~~~lp-f~d~sfDlV~~~~~L~~~~~-----------d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+|.-..+ ....+||+|+++..+..... ...-..++..+.+.|+|||++.+..
T Consensus 249 gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 249 GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 8865433 34578999999866533111 1112368999999999999987653
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.74 E-value=2e-05 Score=80.74 Aligned_cols=66 Identities=11% Similarity=0.014 Sum_probs=53.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc------CC--eeEEEcccccC-CC-CCCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR------GL--ISMHISVSQRL-PF-FENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r------g~--i~~~~~d~~~l-pf-~d~sfDlV~~~ 345 (430)
.+|||+|||+|..+..+++.+.+|+++ |.++.+++.|+++ |. +.++++|+..+ +. ++++||+|++.
T Consensus 95 ~~VLDLgcG~G~~al~LA~~g~~V~~V--D~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 95 TKVVDLTGGLGIDFIALMSKASQGIYI--ERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp CEEEESSCSSSHHHHHHHTTCSEEEEE--ESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CEEEEeCCCchHHHHHHHhcCCEEEEE--ECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 457999999999999999999999999 6668888777654 54 88999998763 32 34689999994
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00029 Score=65.41 Aligned_cols=92 Identities=10% Similarity=0.013 Sum_probs=63.3
Q ss_pred cEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHH----hcCC-----eeEEEccccc---------------C
Q 043503 278 RIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIA----SRGL-----ISMHISVSQR---------------L 332 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~----~rg~-----i~~~~~d~~~---------------l 332 (430)
++||++||| .-++.+++. +.+|+++ |.++...+.++ +.|. +.++.+++.. +
T Consensus 32 ~~VLEiGtG--ySTl~lA~~~~g~Vvtv--E~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 32 EVILEYGSG--GSTVVAAELPGKHVTSV--ESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp SEEEEESCS--HHHHHHHTSTTCEEEEE--ESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CEEEEECch--HHHHHHHHcCCCEEEEE--eCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 567999985 567777776 7899998 44566655554 3353 7888888543 2
Q ss_pred C--------C-CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 333 P--------F-FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 333 p--------f-~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
+ . ..++||+|+.-.-. ....+..+.+.|+|||.++++++..
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~k--------~~~~~~~~l~~l~~GG~Iv~DNv~~ 157 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGRF--------RVGCALATAFSITRPVTLLFDDYSQ 157 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSSS--------HHHHHHHHHHHCSSCEEEEETTGGG
T ss_pred HHHhhhhhccccCCCCCEEEEeCCC--------chhHHHHHHHhcCCCeEEEEeCCcC
Confidence 2 1 23789999994321 2355666779999999999987543
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.69 E-value=7.3e-05 Score=72.61 Aligned_cols=140 Identities=15% Similarity=0.069 Sum_probs=74.8
Q ss_pred cEEEEEcCCccHHHHHHHHc-CC-EEEEEecCCChhHHHHHHh---cCC-eeEEEcccccCCCCCCceeEEEEccchh--
Q 043503 278 RIGLDIGGGTGTFAARMRER-NV-TIITTSLNLDGPFNSFIAS---RGL-ISMHISVSQRLPFFENTLDIVHSMHVLS-- 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~---rg~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~-- 349 (430)
.+|||+|||.|.|+.+++++ ++ .|+++|+... +...+.. .+. +.....+..-..++.+.+|+|+|.....
T Consensus 92 ~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d--~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDmApnsG 169 (282)
T 3gcz_A 92 GIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQ--GHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDIGESSP 169 (282)
T ss_dssp EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT--TSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECCCCCCS
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccC--ccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecCccCCC
Confidence 35799999999999998865 44 4667644321 1111110 011 2222322222335578999999954432
Q ss_pred -hcCCchhHHHHHHHHHHhccCC--cEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEecccccCCCchhHHHhHhh
Q 043503 350 -NWIPDSMLEFTLYDIYRLLRPG--GIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMKLDRGVKKNEWYFSAV 424 (430)
Q Consensus 350 -~~~~d~~l~~~L~ei~RvLrPG--G~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~~k~~~g~~~~~~~lsa~ 424 (430)
++++......+|.-+.++|+|| |.|++.-|-..+++..+ +...+++. |+.+....+ . .+. +..|+|+.+.
T Consensus 170 ~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~-l~~~lk~~-F~~V~~~KP-a-SR~-~S~E~Y~V~~ 242 (282)
T 3gcz_A 170 SIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIME-ELSRLQLK-HGGGLVRVP-L-SRN-STHEMYWVSG 242 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHH-HHHHHHHH-HCCEEECCT-T-SCT-TCCCEEEETT
T ss_pred ChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHH-HHHHHHHh-cCCEEEEcC-C-Ccc-cCcceeEEEe
Confidence 0122211223567778999999 99999755533443333 33333332 555554433 2 222 2345555443
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.63 E-value=3.3e-05 Score=74.35 Aligned_cols=89 Identities=10% Similarity=-0.032 Sum_probs=57.9
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhH-------HHHHHhc----C----CeeEEEccccc-CCCCCCceeE
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPF-------NSFIASR----G----LISMHISVSQR-LPFFENTLDI 341 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~-------le~a~~r----g----~i~~~~~d~~~-lpf~d~sfDl 341 (430)
.+|||+|||+|..+..++.+|.+|+++ |.++.+ ++.+.++ + .+.++.+|... ++....+||+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~V~~v--E~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDv 167 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCRVRML--ERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEE--ECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred CEEEEcCCcCCHHHHHHHHcCCEEEEE--ECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCE
Confidence 456999999999999999999899998 555644 2222211 2 37899998765 3422347999
Q ss_pred EEEccchhhcCCchhHHHHHHHHHHhccCCc
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYDIYRLLRPGG 372 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG 372 (430)
|++...+.+ ... ...+.+..++||+.+
T Consensus 168 V~lDP~y~~-~~~---saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 168 VYLDPMFPH-KQK---SALVKKEMRVFQSLV 194 (258)
T ss_dssp EEECCCCCC-CCC--------HHHHHHHHHS
T ss_pred EEEcCCCCC-ccc---chHHHHHHHHHHHhh
Confidence 999766632 222 245666777777754
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00026 Score=75.11 Aligned_cols=119 Identities=13% Similarity=0.045 Sum_probs=74.3
Q ss_pred EEEEEcCCccHHHHHHHHc-----------------CCEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCC-
Q 043503 279 IGLDIGGGTGTFAARMRER-----------------NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLP- 333 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~-----------------g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lp- 333 (430)
+|||.+||+|.|...+++. ...++|+ |+++.+...|+.+ |. +.+.++|.-..+
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~--Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~ 324 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQ--ESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ 324 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEEC--CCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEE--eCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc
Confidence 6799999999998877542 3467777 6667777766643 43 223566654433
Q ss_pred CCCCceeEEEEccchhh--cCCc-----------------------h-hHHHHHHHHHHhccCCcEEEEee---ccccCc
Q 043503 334 FFENTLDIVHSMHVLSN--WIPD-----------------------S-MLEFTLYDIYRLLRPGGIFWLDR---FFCFGS 384 (430)
Q Consensus 334 f~d~sfDlV~~~~~L~~--~~~d-----------------------~-~l~~~L~ei~RvLrPGG~lvl~~---f~~~~~ 384 (430)
+.+..||+|+++..+.. |..+ . .--.++..+.+.|+|||++.+.. ++....
T Consensus 325 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~ 404 (544)
T 3khk_A 325 HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNT 404 (544)
T ss_dssp CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCG
T ss_pred cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcCc
Confidence 45689999999765532 2110 0 11258899999999999976542 222221
Q ss_pred CcHHHHHHHHHHcCC
Q 043503 385 QLNETYVPMLDRIGF 399 (430)
Q Consensus 385 ~~~~~~~~ll~~~Gf 399 (430)
.....+.+.+-+.+.
T Consensus 405 ~~~~~iRk~Lle~~~ 419 (544)
T 3khk_A 405 NNEGEIRKTLVEQDL 419 (544)
T ss_dssp GGHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHhCCc
Confidence 233456665655554
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00023 Score=69.82 Aligned_cols=99 Identities=23% Similarity=0.278 Sum_probs=70.5
Q ss_pred CccEEEEEcCCccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhc-----------CCeeEEEcccccC-CCCCCceeE
Q 043503 276 TIRIGLDIGGGTGTFAARMRER-N-VTIITTSLNLDGPFNSFIASR-----------GLISMHISVSQRL-PFFENTLDI 341 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~r-----------g~i~~~~~d~~~l-pf~d~sfDl 341 (430)
..++||=||.|.|..+..+++. + .+|+.+ |+++.+++.+++. ..+.++.+|+..+ .-..++||+
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~V--EID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMV--EIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEE--ESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEE--cCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 4567899999999999999987 3 477777 5557777776543 2388899987554 345678999
Q ss_pred EEEccchhhcCCch--hHHHHHHHHHHhccCCcEEEEe
Q 043503 342 VHSMHVLSNWIPDS--MLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 342 V~~~~~L~~~~~d~--~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
|+.- ......+.. ....++..+.++|+|||.++.-
T Consensus 161 Ii~D-~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 161 IISD-CTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp EEES-CCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred EEEe-CCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence 9983 221111110 1246899999999999999863
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00073 Score=71.59 Aligned_cols=144 Identities=15% Similarity=0.053 Sum_probs=85.6
Q ss_pred eeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-----CCEEEEEecCCChhHHHHHHhc----CC---
Q 043503 254 WLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-----NVTIITTSLNLDGPFNSFIASR----GL--- 321 (430)
Q Consensus 254 ~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-----g~~Vv~vdiD~s~~~le~a~~r----g~--- 321 (430)
+..+.....+.++.+..........+|+|.+||+|.|...+++. ...++|+|+ ++.+...|+.+ |.
T Consensus 199 fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Ei--d~~~~~lA~~Nl~l~gi~~~ 276 (542)
T 3lkd_A 199 FYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQEL--NTSTYNLARMNMILHGVPIE 276 (542)
T ss_dssp CCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEES--CHHHHHHHHHHHHHTTCCGG
T ss_pred ecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEEC--cHHHHHHHHHHHHHcCCCcC
Confidence 34455555554433332111223346799999999998888766 568888854 56666666543 44
Q ss_pred -eeEEEcccccC--C-CCCCceeEEEEccchh-hcCCc------------------h-hHHHHHHHHHHhcc-CCcEEEE
Q 043503 322 -ISMHISVSQRL--P-FFENTLDIVHSMHVLS-NWIPD------------------S-MLEFTLYDIYRLLR-PGGIFWL 376 (430)
Q Consensus 322 -i~~~~~d~~~l--p-f~d~sfDlV~~~~~L~-~~~~d------------------~-~l~~~L~ei~RvLr-PGG~lvl 376 (430)
+.+..+|.-.. | .....||+|+++..+. .|..+ . .--.++..+.+.|+ |||++.+
T Consensus 277 ~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~ 356 (542)
T 3lkd_A 277 NQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAI 356 (542)
T ss_dssp GEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEE
T ss_pred ccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEE
Confidence 56788886554 4 4568899999975442 11100 0 01248999999999 9999865
Q ss_pred eecc--ccCcCcHHHHHHHHHHcCC
Q 043503 377 DRFF--CFGSQLNETYVPMLDRIGF 399 (430)
Q Consensus 377 ~~f~--~~~~~~~~~~~~ll~~~Gf 399 (430)
...- .........+.+.+-+.+.
T Consensus 357 VlP~g~Lf~~~~~~~iRk~Lle~~~ 381 (542)
T 3lkd_A 357 VLPHGVLFRGNAEGTIRKALLEEGA 381 (542)
T ss_dssp EEETHHHHCCTHHHHHHHHHHHTTC
T ss_pred EecchHhhCCchhHHHHHHHHhCCc
Confidence 4211 1111223446665555554
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00052 Score=75.54 Aligned_cols=98 Identities=12% Similarity=0.056 Sum_probs=64.2
Q ss_pred cEEEEEcCCccHHHHHHHHcC-----CEEEEEecCCChhHHHHH--Hh--------cCC--eeEEEcccccC-CCCCCce
Q 043503 278 RIGLDIGGGTGTFAARMRERN-----VTIITTSLNLDGPFNSFI--AS--------RGL--ISMHISVSQRL-PFFENTL 339 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g-----~~Vv~vdiD~s~~~le~a--~~--------rg~--i~~~~~d~~~l-pf~d~sf 339 (430)
.+|||.|||+|.++..++++. .+++|+ |+++.+.+.| +. +|. ..+...++... +.....|
T Consensus 323 ~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGv--EIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 323 EVISDPAAGSGNLLATVSAGFNNVMPRQIWAN--DIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp CEEEETTCTTSHHHHHHHHTSTTCCGGGEEEE--CSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CEEEECCCCccHHHHHHHHHhcccCCCeEEEE--ECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 467999999999999998762 468888 5556666666 22 122 23444454442 2345789
Q ss_pred eEEEEccchhh-cCCc-------------------------hhHHHHHHHHHHhccCCcEEEEe
Q 043503 340 DIVHSMHVLSN-WIPD-------------------------SMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 340 DlV~~~~~L~~-~~~d-------------------------~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
|+|+++..+.. +..+ .....++..+.+.|+|||++.+.
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfI 464 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAI 464 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEE
Confidence 99999766522 1110 01334788899999999998764
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00044 Score=61.08 Aligned_cols=82 Identities=12% Similarity=0.169 Sum_probs=56.5
Q ss_pred EEEEEcCCcc-HHHHHHHH-cCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCC--CceeEEEEccchhhcCCc
Q 043503 279 IGLDIGGGTG-TFAARMRE-RNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFE--NTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 279 ~VLDIGcGtG-~~a~~La~-~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d--~sfDlV~~~~~L~~~~~d 354 (430)
+|||||||.| ..|..|++ .|+.|+++|++..+ +.++..|..+ |..+ ..||+|.+.+.- .
T Consensus 38 rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~A-----------v~~v~dDiF~-P~~~~Y~~~DLIYsirPP-----~ 100 (153)
T 2k4m_A 38 RVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSH-----------GGIVRDDITS-PRMEIYRGAALIYSIRPP-----A 100 (153)
T ss_dssp EEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSS-----------TTEECCCSSS-CCHHHHTTEEEEEEESCC-----T
T ss_pred cEEEEccCCChHHHHHHHHhCCCeEEEEECCccc-----------cceEEccCCC-CcccccCCcCEEEEcCCC-----H
Confidence 4599999999 69999998 79999999776544 2277777755 3222 479999885332 2
Q ss_pred hhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 355 SMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
.+...+.++.+.. |.-+++..+.
T Consensus 101 -El~~~i~~lA~~v--~adliI~pL~ 123 (153)
T 2k4m_A 101 -EIHSSLMRVADAV--GARLIIKPLT 123 (153)
T ss_dssp -TTHHHHHHHHHHH--TCEEEEECBT
T ss_pred -HHHHHHHHHHHHc--CCCEEEEcCC
Confidence 2555666666554 4667776544
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0019 Score=62.90 Aligned_cols=118 Identities=14% Similarity=0.060 Sum_probs=77.8
Q ss_pred cEEEEEcCCccHHHHHHHHc-------CCEEEEEecCCC------------------------hhHHHHHHh----c---
Q 043503 278 RIGLDIGGGTGTFAARMRER-------NVTIITTSLNLD------------------------GPFNSFIAS----R--- 319 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-------g~~Vv~vdiD~s------------------------~~~le~a~~----r--- 319 (430)
..||++|+..|..+..|++. +.+|+++|..-. +...+.+++ .
T Consensus 108 g~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl~ 187 (282)
T 2wk1_A 108 GDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDLL 187 (282)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTCC
T ss_pred CcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCCC
Confidence 34599999999988777643 567888874310 001223332 2
Q ss_pred -CCeeEEEcccc-cCC-CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHH
Q 043503 320 -GLISMHISVSQ-RLP-FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDR 396 (430)
Q Consensus 320 -g~i~~~~~d~~-~lp-f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~ 396 (430)
..+.++.+++. .+| +++++||+|+.-.-.. +....+|..+...|+|||+++++++.. .+...+.+.+..++
T Consensus 188 ~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y-----~~~~~~Le~~~p~L~pGGiIv~DD~~~-~~G~~~Av~Ef~~~ 261 (282)
T 2wk1_A 188 DEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY-----ESTWDTLTNLYPKVSVGGYVIVDDYMM-CPPCKDAVDEYRAK 261 (282)
T ss_dssp STTEEEEESCHHHHSTTCCCCCEEEEEECCCSH-----HHHHHHHHHHGGGEEEEEEEEESSCTT-CHHHHHHHHHHHHH
T ss_pred cCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc-----ccHHHHHHHHHhhcCCCEEEEEcCCCC-CHHHHHHHHHHHHh
Confidence 34899999874 355 4467899999843221 124568999999999999999998732 12234567777778
Q ss_pred cCCEE
Q 043503 397 IGFKK 401 (430)
Q Consensus 397 ~Gfk~ 401 (430)
.|.+.
T Consensus 262 ~~i~~ 266 (282)
T 2wk1_A 262 FDIAD 266 (282)
T ss_dssp TTCCS
T ss_pred cCCce
Confidence 77653
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0014 Score=64.17 Aligned_cols=126 Identities=14% Similarity=0.111 Sum_probs=67.9
Q ss_pred ccEEEEEcCCccHHHHHHHHc-CC-EEEEEecCCChhHHHHH-Hh--cCCeeEEEcccccCCCCCCceeEEEEccchh--
Q 043503 277 IRIGLDIGGGTGTFAARMRER-NV-TIITTSLNLDGPFNSFI-AS--RGLISMHISVSQRLPFFENTLDIVHSMHVLS-- 349 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~-g~-~Vv~vdiD~s~~~le~a-~~--rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~-- 349 (430)
.++|||+||++|.|+..++++ ++ .|+++|+.......... .. ..++.+. .+..-..+....+|+|+|...-.
T Consensus 82 g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~-~~~di~~l~~~~~DlVlsD~APnsG 160 (300)
T 3eld_A 82 TGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFK-DKSNVFTMPTEPSDTLLCDIGESSS 160 (300)
T ss_dssp CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEE-CSCCTTTSCCCCCSEEEECCCCCCS
T ss_pred CCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEee-cCceeeecCCCCcCEEeecCcCCCC
Confidence 456899999999999999986 44 56677553211000000 00 0112232 22222234567899999954331
Q ss_pred h-cCCchhHHHHHHHHHHhccCC-cEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 350 N-WIPDSMLEFTLYDIYRLLRPG-GIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 350 ~-~~~d~~l~~~L~ei~RvLrPG-G~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+ ..+......+|.-+.++|+|| |.|++.-|-+.++.... +...+.+. |+.+...
T Consensus 161 ~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~-ll~~lk~~-F~~V~~~ 216 (300)
T 3eld_A 161 NPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIE-KLERLQLR-FGGGIVR 216 (300)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHH-HHHHHHHH-HCCEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHH-HHHHHHHh-CCcEEEE
Confidence 0 111111123466778999999 99999755544544333 33333332 4544433
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00097 Score=65.19 Aligned_cols=120 Identities=15% Similarity=0.083 Sum_probs=70.2
Q ss_pred EEEEEcCCccHHHHHHHHc-CC-EEEEEecCCCh---hHHHHHHhcCCeeEEEc-ccccCCCCCCceeEEEEccchhhcC
Q 043503 279 IGLDIGGGTGTFAARMRER-NV-TIITTSLNLDG---PFNSFIASRGLISMHIS-VSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~-g~-~Vv~vdiD~s~---~~le~a~~rg~i~~~~~-d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
+|||+||++|.|+.+++.. |+ .|+++|+-... |++-.-....++.+..+ |+..++. ..+|+|+|--. .. .
T Consensus 97 ~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivcDig-eS-s 172 (321)
T 3lkz_A 97 KVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--ECCDTLLCDIG-ES-S 172 (321)
T ss_dssp EEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CCCSEEEECCC-CC-C
T ss_pred EEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CCCCEEEEECc-cC-C
Confidence 6799999999999988877 65 48888654321 11100001123677776 7766663 66999999433 21 2
Q ss_pred Cc-----hhHHHHHHHHHHhccCC-cEEEEeeccccCcCcHHHHHHHHHHcCCEEE
Q 043503 353 PD-----SMLEFTLYDIYRLLRPG-GIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 353 ~d-----~~l~~~L~ei~RvLrPG-G~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
+. .....+|.-+.+.|++| |-|++--|-...++..+.+..+=.+.|=..+
T Consensus 173 ~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~~fgg~lv 228 (321)
T 3lkz_A 173 SSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQRRYGGGLV 228 (321)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHHHHCCEEE
T ss_pred CChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHHHhCCEeE
Confidence 21 11223666667889999 8888854443334343444444344443333
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.003 Score=63.49 Aligned_cols=116 Identities=12% Similarity=0.031 Sum_probs=75.0
Q ss_pred CCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCC--EEEEEecCCChhHHHHHHhc----C--------Cee
Q 043503 258 NGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNV--TIITTSLNLDGPFNSFIASR----G--------LIS 323 (430)
Q Consensus 258 ~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~--~Vv~vdiD~s~~~le~a~~r----g--------~i~ 323 (430)
+.........++...++.. |||+.+|.|.=+..|++.+. .|++. |+++.-++..+++ | .+.
T Consensus 133 Qd~aS~l~~~~L~~~pg~~---VLD~CAaPGGKT~~la~~~~~~~l~A~--D~~~~R~~~l~~~l~r~~~~~~~~~~~v~ 207 (359)
T 4fzv_A 133 MDAASLLPVLALGLQPGDI---VLDLCAAPGGKTLALLQTGCCRNLAAN--DLSPSRIARLQKILHSYVPEEIRDGNQVR 207 (359)
T ss_dssp ECGGGHHHHHHHCCCTTEE---EEESSCTTCHHHHHHHHTTCEEEEEEE--CSCHHHHHHHHHHHHHHSCTTTTTSSSEE
T ss_pred hCHHHHHHHHHhCCCCCCE---EEEecCCccHHHHHHHHhcCCCcEEEE--cCCHHHHHHHHHHHHHhhhhhhccCCceE
Confidence 3334455666776666544 59999999999989988743 67777 6666544333321 2 266
Q ss_pred EEEcccccCC-CCCCceeEEEE----cc---chhh--------cCCc------hhHHHHHHHHHHhccCCcEEEEee
Q 043503 324 MHISVSQRLP-FFENTLDIVHS----MH---VLSN--------WIPD------SMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 324 ~~~~d~~~lp-f~d~sfDlV~~----~~---~L~~--------~~~d------~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+...|...++ ...+.||.|++ +. .... +.+. .....+|....+.|||||+++.++
T Consensus 208 v~~~D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT 284 (359)
T 4fzv_A 208 VTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST 284 (359)
T ss_dssp EECCCGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCchhhcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 6777877665 44678999997 21 1100 1000 123468889999999999999876
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0011 Score=63.63 Aligned_cols=101 Identities=15% Similarity=0.084 Sum_probs=57.3
Q ss_pred cEEEEEcCCccHHHHHHHHc-CC-EEEEEecCCChhHHHHHHh-cC--CeeEEEc-ccccCCCCCCceeEEEEccch--h
Q 043503 278 RIGLDIGGGTGTFAARMRER-NV-TIITTSLNLDGPFNSFIAS-RG--LISMHIS-VSQRLPFFENTLDIVHSMHVL--S 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~-rg--~i~~~~~-d~~~lpf~d~sfDlV~~~~~L--~ 349 (430)
.+|||+||+.|.|+.+++++ ++ .|.+.++..+-++...... .| .+.|..+ |+..++ ...+|+|+|-..- .
T Consensus 75 ~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~DvVLSDMAPnSG 152 (269)
T 2px2_A 75 GKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKP--SEISDTLLCDIGESSP 152 (269)
T ss_dssp EEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSC--CCCCSEEEECCCCCCS
T ss_pred CEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCC--CCCCCEEEeCCCCCCC
Confidence 35699999999999999997 33 3344433222000000000 12 2455556 877643 5689999994221 1
Q ss_pred hcCCc-hhHHHHHHHHHHhccCCc-EEEEeecc
Q 043503 350 NWIPD-SMLEFTLYDIYRLLRPGG-IFWLDRFF 380 (430)
Q Consensus 350 ~~~~d-~~l~~~L~ei~RvLrPGG-~lvl~~f~ 380 (430)
+..-| .....+|.-+.++|+||| .|++--|-
T Consensus 153 ~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 153 SAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred ccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 11111 111125655669999999 89886544
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0022 Score=60.98 Aligned_cols=119 Identities=14% Similarity=0.077 Sum_probs=68.2
Q ss_pred EEEEEcCCccHHHHHHHHc-CC-EEEEEecCCCh---hHHHHHHhcCCeeEEEc-ccccCCCCCCceeEEEEccchhh--
Q 043503 279 IGLDIGGGTGTFAARMRER-NV-TIITTSLNLDG---PFNSFIASRGLISMHIS-VSQRLPFFENTLDIVHSMHVLSN-- 350 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~-g~-~Vv~vdiD~s~---~~le~a~~rg~i~~~~~-d~~~lpf~d~sfDlV~~~~~L~~-- 350 (430)
+|||+||++|.|+.+++.+ |+ .|+++|+-... ++.-.-.-...+.|..+ |...++ ...+|.|+|--.=..
T Consensus 81 ~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~--~~~~DtllcDIgeSs~~ 158 (267)
T 3p8z_A 81 RVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLP--PEKCDTLLCDIGESSPS 158 (267)
T ss_dssp EEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCC--CCCCSEEEECCCCCCSC
T ss_pred EEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecC--CccccEEEEecCCCCCC
Confidence 5799999999999988887 55 58888653221 11111111144888888 876665 367999999422211
Q ss_pred -cCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCE
Q 043503 351 -WIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFK 400 (430)
Q Consensus 351 -~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk 400 (430)
+++......+|.-+.+.|++ |-|++--|-...++..+.+..+=.+.|=.
T Consensus 159 ~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~lq~~fgg~ 208 (267)
T 3p8z_A 159 PTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERLQRKHGGM 208 (267)
T ss_dssp HHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHHHHHHCCE
T ss_pred hhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHHHHHHhCCE
Confidence 11111122366666788998 78877544333333333333333344433
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0038 Score=63.21 Aligned_cols=118 Identities=15% Similarity=0.101 Sum_probs=74.9
Q ss_pred ccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc--------------CCeeEEEcccccCC----CCCC
Q 043503 277 IRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR--------------GLISMHISVSQRLP----FFEN 337 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r--------------g~i~~~~~d~~~lp----f~d~ 337 (430)
.++||=||.|.|..+.++.+. ..+|+.+ |+++.+++.+++. ..+.++.+|+..+- -..+
T Consensus 206 pkrVLIIGgGdG~~~revlkh~~~~V~~V--EIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 206 GKDVLILGGGDGGILCEIVKLKPKMVTMV--EIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TCEEEEEECTTCHHHHHHHTTCCSEEEEE--ESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCeEEEECCCcHHHHHHHHhcCCceeEEE--ccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 467899999999999999887 4466767 5568888888753 12567777764321 1346
Q ss_pred ceeEEEEccchhhcC---C-----chhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHc
Q 043503 338 TLDIVHSMHVLSNWI---P-----DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRI 397 (430)
Q Consensus 338 sfDlV~~~~~L~~~~---~-----d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~ 397 (430)
.||+|+.- +..... + ......++..+.++|+|||.++.-.-...-.+....+.+.+++.
T Consensus 284 ~yDvIIvD-l~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~v 350 (381)
T 3c6k_A 284 EFDYVIND-LTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRL 350 (381)
T ss_dssp CEEEEEEE-CCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTS
T ss_pred ceeEEEEC-CCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHh
Confidence 89999983 211100 1 11135678899999999999876321111112234455666665
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0046 Score=60.19 Aligned_cols=65 Identities=14% Similarity=0.026 Sum_probs=50.7
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc--CCeeEEEcccccCC-----CCCCceeEEEE
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR--GLISMHISVSQRLP-----FFENTLDIVHS 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r--g~i~~~~~d~~~lp-----f~d~sfDlV~~ 344 (430)
.++||.+||.|..+..+++++.+|+++ |.++.+++.+++- +.+.++++++..++ ...+++|.|++
T Consensus 24 g~~VD~T~G~GGHS~~il~~~g~Vigi--D~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g~~~vDgIL~ 95 (285)
T 1wg8_A 24 GVYVDATLGGAGHARGILERGGRVIGL--DQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILA 95 (285)
T ss_dssp CEEEETTCTTSHHHHHHHHTTCEEEEE--ESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEE
T ss_pred CEEEEeCCCCcHHHHHHHHCCCEEEEE--eCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcCCCCcCEEEe
Confidence 457999999999999999998899998 5557777776651 35888999887764 22357999997
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0066 Score=58.89 Aligned_cols=40 Identities=20% Similarity=0.178 Sum_probs=34.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR 319 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r 319 (430)
.+|||++||+|+.+..+++.|.+++++ |+++.+.+.|++|
T Consensus 237 ~~vlD~f~GsGt~~~~a~~~g~~~~g~--e~~~~~~~~a~~r 276 (297)
T 2zig_A 237 DVVLDPFAGTGTTLIAAARWGRRALGV--ELVPRYAQLAKER 276 (297)
T ss_dssp CEEEETTCTTTHHHHHHHHTTCEEEEE--ESCHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHcCCeEEEE--eCCHHHHHHHHHH
Confidence 457999999999999999999999998 5667888777765
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.051 Score=57.18 Aligned_cols=118 Identities=18% Similarity=0.158 Sum_probs=70.6
Q ss_pred eeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---------------CCEEEEEecCCChhHHHHHHh
Q 043503 254 WLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---------------NVTIITTSLNLDGPFNSFIAS 318 (430)
Q Consensus 254 ~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---------------g~~Vv~vdiD~s~~~le~a~~ 318 (430)
+..+....++. -+++...++ .+|+|-+||+|.|...+.+. ...+.|. |+.+.+...|+.
T Consensus 199 fyTP~~Vv~lm-v~l~~p~~~---~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~--E~~~~~~~la~m 272 (530)
T 3ufb_A 199 FYTPRPVVRFM-VEVMDPQLG---ESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGG--EAKSLPYLLVQM 272 (530)
T ss_dssp CCCCHHHHHHH-HHHHCCCTT---CCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEE--CCSHHHHHHHHH
T ss_pred ECCcHHHHHHH-HHhhccCCC---CEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhh--hccHHHHHHHHH
Confidence 44555555553 344443333 34699999999998776543 2467888 555655555543
Q ss_pred c----CC--eeEEEcccccCCC----CCCceeEEEEccchhhcC------------C-chhHHHHHHHHHHhcc------
Q 043503 319 R----GL--ISMHISVSQRLPF----FENTLDIVHSMHVLSNWI------------P-DSMLEFTLYDIYRLLR------ 369 (430)
Q Consensus 319 r----g~--i~~~~~d~~~lpf----~d~sfDlV~~~~~L~~~~------------~-d~~l~~~L~ei~RvLr------ 369 (430)
+ |. ..+..+|.-..|. ....||+|+++..+.... + ...-..++..+.+.|+
T Consensus 273 Nl~lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l 352 (530)
T 3ufb_A 273 NLLLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGS 352 (530)
T ss_dssp HHHHHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSS
T ss_pred HHHhcCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhcc
Confidence 3 43 4667777654442 245799999986663211 0 0112235677777776
Q ss_pred -CCcEEEEe
Q 043503 370 -PGGIFWLD 377 (430)
Q Consensus 370 -PGG~lvl~ 377 (430)
|||++.+.
T Consensus 353 ~~gGr~avV 361 (530)
T 3ufb_A 353 DNGGRAAVV 361 (530)
T ss_dssp SSCCEEEEE
T ss_pred CCCceEEEE
Confidence 79997654
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.026 Score=55.26 Aligned_cols=114 Identities=16% Similarity=0.056 Sum_probs=67.3
Q ss_pred cEEEEEcC------CccHHHHH-HHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccc---
Q 043503 278 RIGLDIGG------GTGTFAAR-MRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHV--- 347 (430)
Q Consensus 278 r~VLDIGc------GtG~~a~~-La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~--- 347 (430)
.+|||+|+ -.|++..+ +...|..|+++|+..-.. ....++++|+..+.. .+.||+|++-..
T Consensus 111 mrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s--------da~~~IqGD~~~~~~-~~k~DLVISDMAPNt 181 (344)
T 3r24_A 111 MRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS--------DADSTLIGDCATVHT-ANKWDLIISDMYDPR 181 (344)
T ss_dssp CEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC--------SSSEEEESCGGGEEE-SSCEEEEEECCCCTT
T ss_pred CEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc--------CCCeEEEcccccccc-CCCCCEEEecCCCCc
Confidence 45799996 56774332 222256888887643111 111458889765443 478999999321
Q ss_pred hhhcC-----CchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 348 LSNWI-----PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 348 L~~~~-----~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
-.+-. .....+.++.=+.++|+|||.|++--|-. +. .+.+.++. + .|+.++..
T Consensus 182 TG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG--sg-~~~L~~lr-k-~F~~VK~f 239 (344)
T 3r24_A 182 TKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH--SW-NADLYKLM-G-HFSWWTAF 239 (344)
T ss_dssp SCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS--SC-CHHHHHHH-T-TEEEEEEE
T ss_pred CCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC--CC-HHHHHHHH-h-hCCeEEEE
Confidence 11100 11135556666778999999999975443 22 34455544 3 78877765
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.095 Score=51.48 Aligned_cols=76 Identities=16% Similarity=0.082 Sum_probs=49.5
Q ss_pred eeEEEcccc-cCC-CCCCceeEEEEccchhhcC-CchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcC
Q 043503 322 ISMHISVSQ-RLP-FFENTLDIVHSMHVLSNWI-PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIG 398 (430)
Q Consensus 322 i~~~~~d~~-~lp-f~d~sfDlV~~~~~L~~~~-~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~G 398 (430)
..+..+|+. .++ +.+..||+|+.- .+..-. |+-=-..++..+++.++|||.|.- |.+. ..+...+..+|
T Consensus 168 L~l~~GDa~~~l~~l~~~~~Da~flD-gFsP~kNPeLWs~e~f~~l~~~~~pgg~laT--Ytaa-----g~VRR~L~~aG 239 (308)
T 3vyw_A 168 LKVLLGDARKRIKEVENFKADAVFHD-AFSPYKNPELWTLDFLSLIKERIDEKGYWVS--YSSS-----LSVRKSLLTLG 239 (308)
T ss_dssp EEEEESCHHHHGGGCCSCCEEEEEEC-CSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE--SCCC-----HHHHHHHHHTT
T ss_pred EEEEechHHHHHhhhcccceeEEEeC-CCCcccCcccCCHHHHHHHHHHhCCCcEEEE--EeCc-----HHHHHHHHHCC
Confidence 456677763 344 345589999983 221111 110114699999999999998753 3332 45777899999
Q ss_pred CEEEEEE
Q 043503 399 FKKLRWN 405 (430)
Q Consensus 399 fk~l~~~ 405 (430)
|.+.+..
T Consensus 240 F~V~k~~ 246 (308)
T 3vyw_A 240 FKVGSSR 246 (308)
T ss_dssp CEEEEEE
T ss_pred CEEEecC
Confidence 9988755
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.25 Score=48.92 Aligned_cols=121 Identities=14% Similarity=0.201 Sum_probs=71.8
Q ss_pred EEEEEcCCccHHHHHHHHcC--CE-EEEEecCCChhHHHHHHhc-CCeeEEEcccccCCC---CCCceeEEEEccchhhc
Q 043503 279 IGLDIGGGTGTFAARMRERN--VT-IITTSLNLDGPFNSFIASR-GLISMHISVSQRLPF---FENTLDIVHSMHVLSNW 351 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g--~~-Vv~vdiD~s~~~le~a~~r-g~i~~~~~d~~~lpf---~d~sfDlV~~~~~L~~~ 351 (430)
+++|+-||.|.++..+.+.| ++ |.++ |+++...+..+.+ +...++.+|...+.. +...+|+|+....--.+
T Consensus 4 ~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~--E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 4 RVLELYSGVGGMHHALRESCIPAQVVAAI--DVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp EEEEETCTTCHHHHHHHHHTCSEEEEEEE--CCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred eEEEeCcCccHHHHHHHHCCCCceEEEEE--eCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 46999999999999999888 43 5556 6667777766665 334567788777641 11258999986441111
Q ss_pred C--------CchhHHHHHH---HHHHhcc--CCcEEE--EeeccccCcCcHHHHHHHHHHcCCEEEEE
Q 043503 352 I--------PDSMLEFTLY---DIYRLLR--PGGIFW--LDRFFCFGSQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 352 ~--------~d~~l~~~L~---ei~RvLr--PGG~lv--l~~f~~~~~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
. .+ ....++. ++.+.++ |.-.++ +..+. .....+.+...+++.||.+...
T Consensus 82 S~ag~~~g~~d-~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~--~~~~~~~i~~~l~~~GY~v~~~ 146 (343)
T 1g55_A 82 TRIGRQGDMTD-SRTNSFLHILDILPRLQKLPKYILLENVKGFE--VSSTRDLLIQTIENCGFQYQEF 146 (343)
T ss_dssp ---------------CHHHHHHHHGGGCSSCCSEEEEEEETTGG--GSHHHHHHHHHHHHTTEEEEEE
T ss_pred hhcCCcCCccC-ccchHHHHHHHHHHHhcCCCCEEEEeCCcccc--CHHHHHHHHHHHHHCCCeeEEE
Confidence 1 11 1122444 4444555 653333 22221 2234567888899999987543
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.39 Score=47.48 Aligned_cols=101 Identities=9% Similarity=0.092 Sum_probs=65.7
Q ss_pred CccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHH----Hhc-----------------------CCeeEEE
Q 043503 276 TIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFI----ASR-----------------------GLISMHI 326 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a----~~r-----------------------g~i~~~~ 326 (430)
..+.|+.+|||..+.+.++... +.+++ ++|. +.+++.- .+. ....++.
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~--EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~ 173 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYV--DIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAA 173 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEE--EEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEE
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEE--ECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEe
Confidence 3467899999999999999875 45555 4465 4443222 111 2356676
Q ss_pred cccccCC--------C-CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 327 SVSQRLP--------F-FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 327 ~d~~~lp--------f-~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
.|+.... . ..+...++++-.++ .+.+.+....++..+.+.. |||.+++.+.+.
T Consensus 174 ~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL-~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~ 235 (334)
T 1rjd_A 174 CDLNDITETTRLLDVCTKREIPTIVISECLL-CYMHNNESQLLINTIMSKF-SHGLWISYDPIG 235 (334)
T ss_dssp CCTTCHHHHHHHHHTTCCTTSCEEEEEESCG-GGSCHHHHHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred cCCCCcHHHHHHHHhcCCCCCCEEEEEcchh-hCCCHHHHHHHHHHHHhhC-CCcEEEEEeccC
Confidence 7765532 1 22456777775666 6777777888898888877 788776555543
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.014 Score=71.79 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=40.6
Q ss_pred EEEEEcCCccHHHHHHHHc-C------CEEEEEecCCChhHHHHHHhcC--C-eeEEEcccccC-CCCCCceeEEEEccc
Q 043503 279 IGLDIGGGTGTFAARMRER-N------VTIITTSLNLDGPFNSFIASRG--L-ISMHISVSQRL-PFFENTLDIVHSMHV 347 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~-g------~~Vv~vdiD~s~~~le~a~~rg--~-i~~~~~d~~~l-pf~d~sfDlV~~~~~ 347 (430)
+||+||.|+|..+..+.+. + ...+.+ |+++.+.+.++++- . +..-..|.+.. ++...+||+|+++++
T Consensus 1243 ~ilEigagtg~~t~~il~~l~~~~~~~~~yt~t--d~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A 1243 KVVEVLAGDGQLYSRIPALLNTQPVMDLDYTAT--DRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp EEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEE--CSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred eEEEECCCccHHHHHHHHhhcccCcccceEEEe--cCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEccc
Confidence 5699999999766555433 1 133444 55555544444331 0 11111122221 344668999999999
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+ |-.++ +...|.++.++|||||++++..
T Consensus 1321 l-~~t~~--~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1321 L-ATLGD--PAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp -----------------------CCEEEEEE
T ss_pred c-ccccc--HHHHHHHHHHhcCCCcEEEEEe
Confidence 9 43444 7789999999999999988754
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.12 E-value=0.071 Score=51.52 Aligned_cols=83 Identities=20% Similarity=0.312 Sum_probs=53.1
Q ss_pred CeeEEEccccc-CC-CCCCceeEEEEccchhhcCC--------------c---hhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 321 LISMHISVSQR-LP-FFENTLDIVHSMHVLSNWIP--------------D---SMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 321 ~i~~~~~d~~~-lp-f~d~sfDlV~~~~~L~~~~~--------------d---~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
.+.++++|+.. ++ +++++||+|+++........ + ..+..++.++.|+|+|||.+++..-..
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~ 100 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDV 100 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCC
Confidence 36788898755 33 56789999999755421100 0 013457889999999999998753110
Q ss_pred c------Cc----CcHHHHHHHHHHcCCEEEE
Q 043503 382 F------GS----QLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 382 ~------~~----~~~~~~~~ll~~~Gfk~l~ 403 (430)
. +. .....+..++++.||....
T Consensus 101 ~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~ 132 (297)
T 2zig_A 101 AVARRRFGRHLVFPLHADIQVRCRKLGFDNLN 132 (297)
T ss_dssp EEECC----EEEECHHHHHHHHHHHTTCEEEE
T ss_pred ccccccCCcccccccHHHHHHHHHHcCCeeec
Confidence 0 00 0124577788999998665
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.41 E-value=0.39 Score=47.41 Aligned_cols=92 Identities=13% Similarity=-0.035 Sum_probs=61.7
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccccC----C-CCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQRL----P-FFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l----p-f~d~sfDlV~~~~~L~ 349 (430)
.+||-+|+|. |.+++.+++. |+ +|+++ +.++...+.+++.|.-.++......+ . ..++.+|+|+..-..
T Consensus 192 ~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~--~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~- 268 (371)
T 1f8f_A 192 SSFVTWGAGAVGLSALLAAKVCGASIIIAV--DIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGS- 268 (371)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEE--ESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCC-
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEE--CCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCC-
Confidence 4569999886 7888888876 87 68887 55677778888777633333221111 0 112379999874221
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
...+.+..+.|+|||.+++....
T Consensus 269 --------~~~~~~~~~~l~~~G~iv~~G~~ 291 (371)
T 1f8f_A 269 --------PEILKQGVDALGILGKIAVVGAP 291 (371)
T ss_dssp --------HHHHHHHHHTEEEEEEEEECCCC
T ss_pred --------HHHHHHHHHHHhcCCEEEEeCCC
Confidence 24578889999999999886543
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.4 Score=48.16 Aligned_cols=119 Identities=13% Similarity=0.025 Sum_probs=72.0
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEE-EEecCCChhHHHHHHhc-CCeeEEEcccccCCC--------CCCceeEEEEccch
Q 043503 279 IGLDIGGGTGTFAARMRERNVTII-TTSLNLDGPFNSFIASR-GLISMHISVSQRLPF--------FENTLDIVHSMHVL 348 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv-~vdiD~s~~~le~a~~r-g~i~~~~~d~~~lpf--------~d~sfDlV~~~~~L 348 (430)
+++|+-||.|.++..+.+.|.+++ ++ |+++...+..+.+ ....++.+|...+.. ....+|+|+....-
T Consensus 4 ~vidLFsG~GGlslG~~~aG~~~v~av--E~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPC 81 (376)
T 3g7u_A 4 NVIDLFSGVGGLSLGAARAGFDVKMAV--EIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPC 81 (376)
T ss_dssp EEEEETCTTSHHHHHHHHHTCEEEEEE--CSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCC
T ss_pred eEEEEccCcCHHHHHHHHCCCcEEEEE--eCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCC
Confidence 469999999999999999998766 55 6667666665555 335677788776641 24679999985331
Q ss_pred hhcC------CchhHHHHH---HHHHHhccCCcEEEEee---ccc-cCcCcHHHHHHHHHHcCCEE
Q 043503 349 SNWI------PDSMLEFTL---YDIYRLLRPGGIFWLDR---FFC-FGSQLNETYVPMLDRIGFKK 401 (430)
Q Consensus 349 ~~~~------~d~~l~~~L---~ei~RvLrPGG~lvl~~---f~~-~~~~~~~~~~~ll~~~Gfk~ 401 (430)
-.+. .++....++ .++.+.++|.- |++.. +.. ......+.+. .+++.||.+
T Consensus 82 Q~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~-~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v 145 (376)
T 3g7u_A 82 QGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLF-FLAENVPGIMQEKYSGIRNKAF-NLVSGDYDI 145 (376)
T ss_dssp CTTC-------CHHHHHHHHHHHHHHHHHCCSE-EEEEECTTTTCGGGHHHHHHHH-HHHHTTEEE
T ss_pred CCcccccCCCCCCchHHHHHHHHHHHHHhCCCE-EEEecchHhhccCcHHHHHHHH-HHHcCCCcc
Confidence 1111 111122333 34555567853 33322 111 1122345666 889999998
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.06 E-value=0.12 Score=48.86 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=33.1
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR 319 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r 319 (430)
.+|||..||+|+.+....+.|.+++++ |+++...+.+++|
T Consensus 214 ~~vlD~f~GsGtt~~~a~~~gr~~ig~--e~~~~~~~~~~~r 253 (260)
T 1g60_A 214 DLVLDCFMGSGTTAIVAKKLGRNFIGC--DMNAEYVNQANFV 253 (260)
T ss_dssp CEEEESSCTTCHHHHHHHHTTCEEEEE--ESCHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHcCCeEEEE--eCCHHHHHHHHHH
Confidence 457999999999999999999999999 5556677766654
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=92.82 E-value=0.52 Score=45.65 Aligned_cols=123 Identities=11% Similarity=0.072 Sum_probs=79.8
Q ss_pred EEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEccccc-CC---CCCCceeEEEEccchhhcC
Q 043503 281 LDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQR-LP---FFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 281 LDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~-lp---f~d~sfDlV~~~~~L~~~~ 352 (430)
||+=+|+|.+++.+.+++.+++.+ |.++...+..+++ ..+.++..|... +. -+...||+|+.-.....
T Consensus 96 LDlfaGSGaLgiEaLS~~d~~vfv--E~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~-- 171 (283)
T 2oo3_A 96 LSYYPGSPYFAINQLRSQDRLYLC--ELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYER-- 171 (283)
T ss_dssp CCEEECHHHHHHHHSCTTSEEEEE--CCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCS--
T ss_pred eeEeCCcHHHHHHHcCCCCeEEEE--eCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCC--
Confidence 999999999999999988788888 6666666666554 347788887432 22 23457999999655531
Q ss_pred CchhHHHHHHHHHH--hccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEeccc
Q 043503 353 PDSMLEFTLYDIYR--LLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMK 409 (430)
Q Consensus 353 ~d~~l~~~L~ei~R--vLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~~k 409 (430)
. +....++..+.+ .+.|+|.+++=..+. .....+.+.+-+++.|.+.+......+
T Consensus 172 k-~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~-~~~~~~~~~~~l~~~~~~~l~~el~~~ 228 (283)
T 2oo3_A 172 K-EEYKEIPYAIKNAYSKFSTGLYCVWYPVV-NKAWTEQFLRKMREISSKSVRIELHLN 228 (283)
T ss_dssp T-THHHHHHHHHHHHHHHCTTSEEEEEEEES-SHHHHHHHHHHHHHHCSSEEEEEEECC
T ss_pred C-cHHHHHHHHHHHhCccCCCeEEEEEEecc-chHHHHHHHHHHHhcCCCeEEEEEEec
Confidence 1 135666666665 456899887743332 222334555666666766666554443
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=92.55 E-value=1 Score=44.33 Aligned_cols=124 Identities=9% Similarity=0.081 Sum_probs=73.6
Q ss_pred EEEEEcCCccHHHHHHHHcCC--EEE--EEecCCChhHHHHHHhcCCeeEEEcccccCC---CCCCceeEEEEccchhhc
Q 043503 279 IGLDIGGGTGTFAARMRERNV--TII--TTSLNLDGPFNSFIASRGLISMHISVSQRLP---FFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~--~Vv--~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp---f~d~sfDlV~~~~~L~~~ 351 (430)
+++|+-||.|.+...+.+.|. +++ ++ |+++...+.-+.+-.-.++.+|...+. ++...+|+++.+..--.+
T Consensus 12 ~vidLFaG~GG~~~G~~~aG~~~~~v~~a~--e~d~~a~~ty~~N~~~~~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ~f 89 (327)
T 3qv2_A 12 NVIEFFSGIGGLRSSYERSSININATFIPF--DINEIANKIYSKNFKEEVQVKNLDSISIKQIESLNCNTWFMSPPCQPY 89 (327)
T ss_dssp EEEEETCTTTHHHHHHHHSSCCCCEEEEEE--CCCHHHHHHHHHHHCCCCBCCCTTTCCHHHHHHTCCCEEEECCCCTTC
T ss_pred EEEEECCChhHHHHHHHHcCCCceEEEEEE--ECCHHHHHHHHHHCCCCcccCChhhcCHHHhccCCCCEEEecCCccCc
Confidence 569999999999999998884 554 66 555655555554421125567776664 222368999975331111
Q ss_pred ----------CCchhHHHHHHHHHH-hc-----cCCcEEEEeeccc-cCcCcHHHHHHHHHHcCCEEEEEEe
Q 043503 352 ----------IPDSMLEFTLYDIYR-LL-----RPGGIFWLDRFFC-FGSQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 352 ----------~~d~~l~~~L~ei~R-vL-----rPGG~lvl~~f~~-~~~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
..+ ....++.++.| ++ +|. +|++..... ......+.+.+.+++.||.+....+
T Consensus 90 s~S~ag~~~~~~d-~r~~L~~~~~r~~i~~~~~~P~-~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl 159 (327)
T 3qv2_A 90 NNSIMSKHKDIND-PRAKSVLHLYRDILPYLINKPK-HIFIENVPLFKESLVFKEIYNILIKNQYYIKDIIC 159 (327)
T ss_dssp SHHHHTTTCTTTC-GGGHHHHHHHHTTGGGCSSCCS-EEEEEECGGGGGSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ccccCCCCCCCcc-ccchhHHHHHHHHHHHhccCCC-EEEEEchhhhcChHHHHHHHHHHHhCCCEEEEEEE
Confidence 122 23356777777 54 454 344432211 1123456788889999998765443
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=92.42 E-value=0.38 Score=42.77 Aligned_cols=91 Identities=19% Similarity=0.076 Sum_probs=56.2
Q ss_pred cEEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEccccc----CC--CCCCceeEEEEccch
Q 043503 278 RIGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQR----LP--FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~----lp--f~d~sfDlV~~~~~L 348 (430)
++||.+|+ |.|..+..++.. |.+|+++ +.++...+.+++.|....+...... +. ...+.+|+|+.+-.
T Consensus 40 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~--~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g- 116 (198)
T 1pqw_A 40 ERVLIHSATGGVGMAAVSIAKMIGARIYTT--AGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA- 116 (198)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEE--ESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC-
T ss_pred CEEEEeeCCChHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCc-
Confidence 45799994 556666666654 9999888 4456666666665642222111111 00 12346999997421
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
. ..+....++|+|||.+++....
T Consensus 117 ----~-----~~~~~~~~~l~~~G~~v~~g~~ 139 (198)
T 1pqw_A 117 ----G-----EAIQRGVQILAPGGRFIELGKK 139 (198)
T ss_dssp ----T-----HHHHHHHHTEEEEEEEEECSCG
T ss_pred ----h-----HHHHHHHHHhccCCEEEEEcCC
Confidence 1 2577888999999999886543
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=92.24 E-value=0.51 Score=46.19 Aligned_cols=91 Identities=12% Similarity=0.049 Sum_probs=60.3
Q ss_pred EEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccchh
Q 043503 279 IGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L~ 349 (430)
+||=+|+|. |.++..+++. |+ +|+++ +.++..++.+++-|.-.++......+. .....+|+|+..-.-
T Consensus 169 ~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~--~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~- 245 (352)
T 3fpc_A 169 TVCVIGIGPVGLMSVAGANHLGAGRIFAV--GSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGD- 245 (352)
T ss_dssp CEEEECCSHHHHHHHHHHHTTTCSSEEEE--CCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSC-
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCC-
Confidence 347788875 7788888876 87 78887 666777788888776444332211111 123469999974211
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
+ ..+....+.|+|||.+++....
T Consensus 246 ---~-----~~~~~~~~~l~~~G~~v~~G~~ 268 (352)
T 3fpc_A 246 ---V-----HTFAQAVKMIKPGSDIGNVNYL 268 (352)
T ss_dssp ---T-----THHHHHHHHEEEEEEEEECCCC
T ss_pred ---h-----HHHHHHHHHHhcCCEEEEeccc
Confidence 1 2577888999999999875543
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.04 E-value=0.22 Score=49.57 Aligned_cols=77 Identities=12% Similarity=0.024 Sum_probs=52.9
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc---CCeeEEEcccccCC--CC-
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR---GLISMHISVSQRLP--FF- 335 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r---g~i~~~~~d~~~lp--f~- 335 (430)
+++++..+......+++|..||.|..+..++++ +.+|+++ |.++.+++.++ + ..+.++.+++..+. ..
T Consensus 46 l~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~--D~Dp~Al~~A~-rL~~~Rv~lv~~nF~~l~~~L~~ 122 (347)
T 3tka_A 46 LDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAI--DRDPQAIAVAK-TIDDPRFSIIHGPFSALGEYVAE 122 (347)
T ss_dssp THHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEE--ESCHHHHHHHT-TCCCTTEEEEESCGGGHHHHHHH
T ss_pred HHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHH-hhcCCcEEEEeCCHHHHHHHHHh
Confidence 344444333333345799999999999999987 4689988 55577777773 3 34788888877654 11
Q ss_pred ---CCceeEEEE
Q 043503 336 ---ENTLDIVHS 344 (430)
Q Consensus 336 ---d~sfDlV~~ 344 (430)
.+++|.|+.
T Consensus 123 ~g~~~~vDgILf 134 (347)
T 3tka_A 123 RDLIGKIDGILL 134 (347)
T ss_dssp TTCTTCEEEEEE
T ss_pred cCCCCcccEEEE
Confidence 136999988
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=92.01 E-value=0.5 Score=46.15 Aligned_cols=88 Identities=17% Similarity=0.093 Sum_probs=60.3
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCch
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
.+||-+|+|. |.++..+++. |++|+++ +.++.-.+.+++.|.-.++ .+.+.+. ..+|+|+..-.- +
T Consensus 178 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~--~~~~~~~~~~~~lGa~~v~-~~~~~~~---~~~D~vid~~g~----~-- 245 (348)
T 3two_A 178 TKVGVAGFGGLGSMAVKYAVAMGAEVSVF--ARNEHKKQDALSMGVKHFY-TDPKQCK---EELDFIISTIPT----H-- 245 (348)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEE--CSSSTTHHHHHHTTCSEEE-SSGGGCC---SCEEEEEECCCS----C--
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEE--eCCHHHHHHHHhcCCCeec-CCHHHHh---cCCCEEEECCCc----H--
Confidence 4458889875 7788888776 9999988 5556667888887764444 3333222 279999974222 1
Q ss_pred hHHHHHHHHHHhccCCcEEEEeecc
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
..+....++|+|||.+++....
T Consensus 246 ---~~~~~~~~~l~~~G~iv~~G~~ 267 (348)
T 3two_A 246 ---YDLKDYLKLLTYNGDLALVGLP 267 (348)
T ss_dssp ---CCHHHHHTTEEEEEEEEECCCC
T ss_pred ---HHHHHHHHHHhcCCEEEEECCC
Confidence 1366788999999999886543
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=91.57 E-value=1.6 Score=42.88 Aligned_cols=121 Identities=12% Similarity=0.117 Sum_probs=70.2
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc-CCeeEEEcccccCCCC-CCceeEEEEccchhhcC----
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR-GLISMHISVSQRLPFF-ENTLDIVHSMHVLSNWI---- 352 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r-g~i~~~~~d~~~lpf~-d~sfDlV~~~~~L~~~~---- 352 (430)
+++|+.||.|.++..+.+.|.+++.. +|+++...+..+.+ +... .+|...+... -..+|+|+....--.+.
T Consensus 13 ~~~dLFaG~Gg~~~g~~~aG~~~v~~-~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ag~ 89 (327)
T 2c7p_A 13 RFIDLFAGLGGFRLALESCGAECVYS-NEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSISGK 89 (327)
T ss_dssp EEEEETCTTTHHHHHHHHTTCEEEEE-ECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCTTSC
T ss_pred cEEEECCCcCHHHHHHHHCCCeEEEE-EeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcchhcc
Confidence 56999999999999999999876543 36666666555544 2211 5666655411 12489999853221111
Q ss_pred ------CchhHHHHHHHHHHhccCCcEEEEee---cccc-CcCcHHHHHHHHHHcCCEEEE
Q 043503 353 ------PDSMLEFTLYDIYRLLRPGGIFWLDR---FFCF-GSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 353 ------~d~~l~~~L~ei~RvLrPGG~lvl~~---f~~~-~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
+...+-.-+.++.+.++|. +|++.. +... .....+.+...+++.||.+.-
T Consensus 90 ~~g~~d~r~~L~~~~~r~i~~~~P~-~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~ 149 (327)
T 2c7p_A 90 QKGFEDSRGTLFFDIARIVREKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHA 149 (327)
T ss_dssp CCGGGSTTSCHHHHHHHHHHHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEE
T ss_pred cCCCcchhhHHHHHHHHHHHhccCc-EEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEE
Confidence 1112333344455567886 333322 1111 122456788889999997543
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=91.51 E-value=0.58 Score=45.91 Aligned_cols=91 Identities=15% Similarity=0.094 Sum_probs=59.5
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcc---ccc----CC-CCCCceeEEEEcc
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISV---SQR----LP-FFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d---~~~----lp-f~d~sfDlV~~~~ 346 (430)
.+||-+|+|. |.++..+++. |+ +|+++ +.++.-.+.+++.|.-.++... ... +. ...+.+|+|+..-
T Consensus 173 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~--~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~ 250 (356)
T 1pl8_A 173 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVT--DLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT 250 (356)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence 3458899875 7888888775 88 88888 5567777888877763333221 011 10 0115699998742
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
.. ...+....++|+|||.+++...
T Consensus 251 g~---------~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 251 GA---------EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp CC---------HHHHHHHHHHSCTTCEEEECSC
T ss_pred CC---------hHHHHHHHHHhcCCCEEEEEec
Confidence 21 2356788899999999987654
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=91.50 E-value=1.1 Score=48.10 Aligned_cols=77 Identities=21% Similarity=0.209 Sum_probs=48.2
Q ss_pred eeEEEccccc-CC-CC---CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHH
Q 043503 322 ISMHISVSQR-LP-FF---ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDR 396 (430)
Q Consensus 322 i~~~~~d~~~-lp-f~---d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~ 396 (430)
+.++.+|+.. ++ +. +..+|+++.-..--.-.++-=...++..+.++++|||.+.-. .+ ...+...+.+
T Consensus 150 l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~--~~-----~~~vr~~l~~ 222 (689)
T 3pvc_A 150 LDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF--TA-----AGFVRRGLQQ 222 (689)
T ss_dssp EEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES--CC-----CHHHHHHHHH
T ss_pred EEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec--cC-----cHHHHHHHHh
Confidence 4566677632 33 21 478999988322111112111256899999999999986542 22 2457788999
Q ss_pred cCCEEEEEE
Q 043503 397 IGFKKLRWN 405 (430)
Q Consensus 397 ~Gfk~l~~~ 405 (430)
+||.+.+..
T Consensus 223 aGf~~~~~~ 231 (689)
T 3pvc_A 223 AGFNVTKVK 231 (689)
T ss_dssp TTCEEEEEE
T ss_pred CCeEEEecc
Confidence 999988755
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.45 E-value=0.29 Score=47.88 Aligned_cols=82 Identities=22% Similarity=0.158 Sum_probs=52.6
Q ss_pred eeEEEccccc-CC-CCCCceeEEEEccchhhcCC-----------chhHHHHHHHHHHhccCCcEEEEeeccc--cCc--
Q 043503 322 ISMHISVSQR-LP-FFENTLDIVHSMHVLSNWIP-----------DSMLEFTLYDIYRLLRPGGIFWLDRFFC--FGS-- 384 (430)
Q Consensus 322 i~~~~~d~~~-lp-f~d~sfDlV~~~~~L~~~~~-----------d~~l~~~L~ei~RvLrPGG~lvl~~f~~--~~~-- 384 (430)
..++.+|+.. +. +++++||+|++......-.. ...+...+.++.|+|+|||.+++..--. .+.
T Consensus 15 ~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~ 94 (323)
T 1boo_A 15 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPA 94 (323)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEEE
T ss_pred ceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCcc
Confidence 5677888643 44 56889999999754421100 0136778999999999999998853111 110
Q ss_pred ---CcHHHHHHHHHHcCCEEEE
Q 043503 385 ---QLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 385 ---~~~~~~~~ll~~~Gfk~l~ 403 (430)
...+.+..+++..||....
T Consensus 95 ~~~~~~~~i~~~~~~~Gf~~~~ 116 (323)
T 1boo_A 95 RSIYNFRVLIRMIDEVGFFLAE 116 (323)
T ss_dssp ECCHHHHHHHHHHHTTCCEEEE
T ss_pred cccchHHHHHHHHHhCCCEEEE
Confidence 0124455677899998654
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=91.27 E-value=2.8 Score=40.38 Aligned_cols=124 Identities=12% Similarity=0.140 Sum_probs=73.2
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEE-EEecCCChhHHHHHHhcCCeeEEEcccccCCCC-CCceeEEEEccchhhc-----
Q 043503 279 IGLDIGGGTGTFAARMRERNVTII-TTSLNLDGPFNSFIASRGLISMHISVSQRLPFF-ENTLDIVHSMHVLSNW----- 351 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv-~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~-d~sfDlV~~~~~L~~~----- 351 (430)
+|||+=||.|.+...+.+.|.+++ ++|+| +...+.-+.+-.-.++.+|...+... -..+|+++....--.+
T Consensus 2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d--~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag~ 79 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAGFRIICANEYD--KSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGS 79 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTTCEEEEEEECC--TTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETTE
T ss_pred eEEEeCcCccHHHHHHHHCCCEEEEEEeCC--HHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCCC
Confidence 369999999999999988898776 55444 44444444443346677887776521 1358999874321111
Q ss_pred ---CCc--hhHHHHHHHHHHhccCCcEEEEee---ccc-cCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 352 ---IPD--SMLEFTLYDIYRLLRPGGIFWLDR---FFC-FGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 352 ---~~d--~~l~~~L~ei~RvLrPGG~lvl~~---f~~-~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
..+ ..+-..+.++.+.+||. +|++.. +.. ......+.+...+++.||.+.-..
T Consensus 80 ~~g~~d~R~~L~~~~~r~i~~~~Pk-~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~v 141 (331)
T 3ubt_Y 80 LRGIDDPRGKLFYEYIRILKQKKPI-FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIIL 141 (331)
T ss_dssp ECCTTCGGGHHHHHHHHHHHHHCCS-EEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEEE
T ss_pred ccCCCCchhHHHHHHHHHHhccCCe-EEEeeeecccccccccchhhhhhhhhccCCcEEEEEe
Confidence 112 12333334455567886 334322 111 122345678888999999865433
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=91.25 E-value=0.91 Score=44.87 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=61.1
Q ss_pred EEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccccC--------CCCCCceeEEEEccc
Q 043503 279 IGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQRL--------PFFENTLDIVHSMHV 347 (430)
Q Consensus 279 ~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l--------pf~d~sfDlV~~~~~ 347 (430)
+||=+|+|. |.+++.+++. |+ +|+++ +.++.-.+.+++-|.-.++......+ ....+.+|+|+..-.
T Consensus 185 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~--~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~G 262 (370)
T 4ej6_A 185 TVAILGGGVIGLLTVQLARLAGATTVILS--TRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAG 262 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEE--CSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECSC
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECCC
Confidence 457788765 7788888776 88 88887 66777788888877644432211111 022347999998421
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
. ...+....++|++||.+++....
T Consensus 263 ~---------~~~~~~~~~~l~~~G~vv~~G~~ 286 (370)
T 4ej6_A 263 V---------AETVKQSTRLAKAGGTVVILGVL 286 (370)
T ss_dssp C---------HHHHHHHHHHEEEEEEEEECSCC
T ss_pred C---------HHHHHHHHHHhccCCEEEEEecc
Confidence 1 24678889999999999886544
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=91.00 E-value=0.38 Score=48.01 Aligned_cols=100 Identities=12% Similarity=0.090 Sum_probs=62.7
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccccC-C------CCCCceeEEEEccc
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQRL-P------FFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l-p------f~d~sfDlV~~~~~ 347 (430)
.+||-+|+|. |.++..+++. |+ +|+++ +.++..++.+++.|. .++......+ . .....+|+|+..-.
T Consensus 187 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~--~~~~~~~~~a~~lGa-~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g 263 (398)
T 2dph_A 187 SHVYIAGAGPVGRCAAAGARLLGAACVIVG--DQNPERLKLLSDAGF-ETIDLRNSAPLRDQIDQILGKPEVDCGVDAVG 263 (398)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEE--ESCHHHHHHHHTTTC-EEEETTSSSCHHHHHHHHHSSSCEEEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHcCC-cEEcCCCcchHHHHHHHHhCCCCCCEEEECCC
Confidence 4569999876 8888888876 88 89988 556777788887776 4332221111 0 11236999997533
Q ss_pred hhhcC--C---chhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 348 LSNWI--P---DSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 348 L~~~~--~---d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
-.... + .......+.++.++|+|||.+++....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~ 301 (398)
T 2dph_A 264 FEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIY 301 (398)
T ss_dssp TTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred CccccccccccccccHHHHHHHHHHHhcCCEEEEeccc
Confidence 21000 0 000123678889999999999875543
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=90.88 E-value=0.81 Score=44.41 Aligned_cols=91 Identities=13% Similarity=0.062 Sum_probs=60.6
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC----CCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP----FFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp----f~d~sfDlV~~~~~L~~~ 351 (430)
.+||-+|+|. |.++..+++. |++|+++ +.++...+.+++.|.-.++......+. -..+.+|+|+..-.
T Consensus 168 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~--~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g---- 241 (340)
T 3s2e_A 168 QWVVISGIGGLGHVAVQYARAMGLRVAAV--DIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAV---- 241 (340)
T ss_dssp SEEEEECCSTTHHHHHHHHHHTTCEEEEE--ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSC----
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEE--eCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCC----
Confidence 4457789875 8888888876 9999988 556777888888776333322111110 01136898887321
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
....+....++|+|||.+++...
T Consensus 242 -----~~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 242 -----SPKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp -----CHHHHHHHHHHEEEEEEEEECSC
T ss_pred -----CHHHHHHHHHHhccCCEEEEeCC
Confidence 12467888999999999987543
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=90.85 E-value=2.2 Score=35.82 Aligned_cols=108 Identities=11% Similarity=0.110 Sum_probs=64.8
Q ss_pred EEEEEcCCc-c-HHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC----CCCCceeEEEEccchhhcC
Q 043503 279 IGLDIGGGT-G-TFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP----FFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 279 ~VLDIGcGt-G-~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp----f~d~sfDlV~~~~~L~~~~ 352 (430)
+++=+|+|. | .++..|.+.|..|+++| .++...+.+++.|. .++.+|..... ..-..+|+|++. .
T Consensus 9 ~viIiG~G~~G~~la~~L~~~g~~v~vid--~~~~~~~~~~~~g~-~~i~gd~~~~~~l~~a~i~~ad~vi~~------~ 79 (140)
T 3fwz_A 9 HALLVGYGRVGSLLGEKLLASDIPLVVIE--TSRTRVDELRERGV-RAVLGNAANEEIMQLAHLECAKWLILT------I 79 (140)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEE--SCHHHHHHHHHTTC-EEEESCTTSHHHHHHTTGGGCSEEEEC------C
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEE--CCHHHHHHHHHcCC-CEEECCCCCHHHHHhcCcccCCEEEEE------C
Confidence 357777765 3 23444445599999984 45666666666665 56777754422 122468988873 2
Q ss_pred CchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEE
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
++......+....|.+.|+..++.-- ......+.+.+.|-..+
T Consensus 80 ~~~~~n~~~~~~a~~~~~~~~iiar~-------~~~~~~~~l~~~G~d~v 122 (140)
T 3fwz_A 80 PNGYEAGEIVASARAKNPDIEIIARA-------HYDDEVAYITERGANQV 122 (140)
T ss_dssp SCHHHHHHHHHHHHHHCSSSEEEEEE-------SSHHHHHHHHHTTCSEE
T ss_pred CChHHHHHHHHHHHHHCCCCeEEEEE-------CCHHHHHHHHHCCCCEE
Confidence 22223334556777888888766531 12445677888887644
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.16 E-value=1.3 Score=43.20 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=58.7
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEccc-ccCC------CC---CCceeEEEEc
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVS-QRLP------FF---ENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~-~~lp------f~---d~sfDlV~~~ 345 (430)
.+||-+|+|. |.++..+++. |++|+++ +.++...+.+++-|.-.++.... ..+. .. .+.+|+|+..
T Consensus 170 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~--~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~ 247 (352)
T 1e3j_A 170 TTVLVIGAGPIGLVSVLAAKAYGAFVVCT--ARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC 247 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEE--ESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEE--cCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence 3458889864 7777777775 8888877 55677778887777633332211 1110 11 2469999874
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
-.. ...+....++|+|||.+++...
T Consensus 248 ~g~---------~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 248 SGN---------EKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp SCC---------HHHHHHHHHHSCTTCEEEECSC
T ss_pred CCC---------HHHHHHHHHHHhcCCEEEEEec
Confidence 221 2357788899999999987653
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=90.01 E-value=1.1 Score=42.78 Aligned_cols=124 Identities=10% Similarity=-0.028 Sum_probs=79.3
Q ss_pred EEEEEcCCccHHHHHHHHc---------CCEEEEEe-----cCCCh--------------------hHHHHHH---hc--
Q 043503 279 IGLDIGGGTGTFAARMRER---------NVTIITTS-----LNLDG--------------------PFNSFIA---SR-- 319 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~---------g~~Vv~vd-----iD~s~--------------------~~le~a~---~r-- 319 (430)
.++++|+-.|..+..++.. .-+|+++| ++.++ ..++.+. ++
T Consensus 72 ~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~ 151 (257)
T 3tos_A 72 VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECSD 151 (257)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTTS
T ss_pred eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhhhh
Confidence 4599999999877765541 36888887 33221 0112111 11
Q ss_pred ------CCeeEEEccccc-CC-----CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC-cCc
Q 043503 320 ------GLISMHISVSQR-LP-----FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG-SQL 386 (430)
Q Consensus 320 ------g~i~~~~~d~~~-lp-----f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~-~~~ 386 (430)
..+.++.+++.. +| .+..+||+|+.-.-. +. .....+..+...|+|||+++++++.... +..
T Consensus 152 ~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~---~t~~~le~~~p~l~~GGvIv~DD~~~~~w~G~ 226 (257)
T 3tos_A 152 FFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YE---PTKAVLEAIRPYLTKGSIVAFDELDNPKWPGE 226 (257)
T ss_dssp TTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HH---HHHHHHHHHGGGEEEEEEEEESSTTCTTCTHH
T ss_pred hcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cc---hHHHHHHHHHHHhCCCcEEEEcCCCCCCChHH
Confidence 338899998643 33 245679999994322 11 2456788899999999999999964211 234
Q ss_pred HHHHHHHHHHcCCEEEEEEec
Q 043503 387 NETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 387 ~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
.+.+.+.+.+.|.++.+....
T Consensus 227 ~~A~~ef~~~~~~~i~~~p~~ 247 (257)
T 3tos_A 227 NIAMRKVLGLDHAPLRLLPGR 247 (257)
T ss_dssp HHHHHHHTCTTSSCCEECTTC
T ss_pred HHHHHHHHhhCCCeEEEccCC
Confidence 566788888888877765433
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=89.97 E-value=0.51 Score=47.11 Aligned_cols=53 Identities=11% Similarity=0.056 Sum_probs=40.3
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHh---cCCeeEEEcccccC
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIAS---RGLISMHISVSQRL 332 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~---rg~i~~~~~d~~~l 332 (430)
..|||||.|.|.++..|+++ ..+|+++ +++..+....++ .+.+.++.+|+-.+
T Consensus 60 ~~VlEIGPG~G~LT~~Ll~~~~~~~vvav--E~D~~l~~~L~~~~~~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 60 LKVLDLYPGVGIQSAIFYNKYCPRQYSLL--EKRSSLYKFLNAKFEGSPLQILKRDPYDW 117 (353)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCCSEEEEE--CCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred CEEEEECCCCCHHHHHHHhhCCCCEEEEE--ecCHHHHHHHHHhccCCCEEEEECCccch
Confidence 56799999999999999986 5689988 555666555543 35688888887544
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=89.86 E-value=2.3 Score=41.85 Aligned_cols=125 Identities=12% Similarity=0.104 Sum_probs=72.0
Q ss_pred EEEEEcCCccHHHHHHHHcCC--EE-EEEecCCChhHHHHHHhc-CCeeEEEcccccCC---CCCCceeEEEEccchhhc
Q 043503 279 IGLDIGGGTGTFAARMRERNV--TI-ITTSLNLDGPFNSFIASR-GLISMHISVSQRLP---FFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~--~V-v~vdiD~s~~~le~a~~r-g~i~~~~~d~~~lp---f~d~sfDlV~~~~~L~~~ 351 (430)
+++|+-||.|.+...+.+.|. ++ .++ |+++...+.-+.+ +...++.+|...+. ++...+|+++.+..--.+
T Consensus 5 ~~idLFaG~GG~~~G~~~aG~~~~~v~a~--e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~f 82 (333)
T 4h0n_A 5 KILELYSGIGGMHCAWKESGLDGEIVAAV--DINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPF 82 (333)
T ss_dssp EEEEETCTTTHHHHHHHHHTCSEEEEEEE--CCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCS
T ss_pred EEEEECcCccHHHHHHHHcCCCceEEEEE--eCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcch
Confidence 469999999999999988875 54 455 6666666555544 33456777877664 223368999974221011
Q ss_pred --------CCchhHHHHHHHHHHh---cc-CCcEEEEeeccc-cCcCcHHHHHHHHHHcCCEEEEEEec
Q 043503 352 --------IPDSMLEFTLYDIYRL---LR-PGGIFWLDRFFC-FGSQLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 352 --------~~d~~l~~~L~ei~Rv---Lr-PGG~lvl~~f~~-~~~~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
..+ ....++.++.|+ ++ |. +|++...-. ......+.+.+.+++.||.+....+.
T Consensus 83 S~ag~~~~~~d-~r~~L~~~~~r~i~~~~~P~-~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~ 149 (333)
T 4h0n_A 83 TRNGKYLDDND-PRTNSFLYLIGILDQLDNVD-YILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLC 149 (333)
T ss_dssp EETTEECCTTC-TTSCCHHHHHHHGGGCTTCC-EEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEEC
T ss_pred hhhhhccCCcC-cccccHHHHHHHHHHhcCCC-EEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEec
Confidence 111 112234444444 44 64 333322111 11223567888999999987654433
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=89.84 E-value=1.3 Score=42.90 Aligned_cols=91 Identities=15% Similarity=0.072 Sum_probs=57.3
Q ss_pred cEEEEEcCC--ccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccch
Q 043503 278 RIGLDIGGG--TGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcG--tG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L 348 (430)
++||-+|+| .|..+..+++. |++|++++. ++...+.+++-|.-.++......+. .....+|+|+.+-.-
T Consensus 146 ~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~ 223 (340)
T 3gms_A 146 DVLLVNACGSAIGHLFAQLSQILNFRLIAVTR--NNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGG 223 (340)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHHTCEEEEEES--SSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCH
T ss_pred CEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCC
Confidence 456999986 57778777775 999998854 4555677777665333322111111 123479999984322
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
. .+.+..+.|+|||.+++....
T Consensus 224 ~----------~~~~~~~~l~~~G~iv~~G~~ 245 (340)
T 3gms_A 224 P----------DGNELAFSLRPNGHFLTIGLL 245 (340)
T ss_dssp H----------HHHHHHHTEEEEEEEEECCCT
T ss_pred h----------hHHHHHHHhcCCCEEEEEeec
Confidence 1 123445899999999886543
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=89.29 E-value=1.9 Score=46.15 Aligned_cols=63 Identities=19% Similarity=0.139 Sum_probs=41.2
Q ss_pred CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 336 ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 336 d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+..||+++.-..-..-.|+-=...++..+.++++|||.+.-. .+ ...+...+.++||.+.+..
T Consensus 177 ~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~--~~-----~~~vr~~L~~aGf~v~~~~ 239 (676)
T 3ps9_A 177 NQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF--TS-----AGFVRRGLQDAGFTMQKRK 239 (676)
T ss_dssp TTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES--CC-----CHHHHHHHHHHTCEEEEEE
T ss_pred CCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec--cC-----cHHHHHHHHhCCeEEEecc
Confidence 467999998321111011111246899999999999987642 22 2457788899999987754
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=89.17 E-value=2 Score=41.77 Aligned_cols=100 Identities=12% Similarity=0.019 Sum_probs=66.1
Q ss_pred CccEEEEEcCCccHHHHHHHH-cCCEEEEEecCCChhHHHHHH----h-----cCCeeEEEcccccCC---------CCC
Q 043503 276 TIRIGLDIGGGTGTFAARMRE-RNVTIITTSLNLDGPFNSFIA----S-----RGLISMHISVSQRLP---------FFE 336 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~-~g~~Vv~vdiD~s~~~le~a~----~-----rg~i~~~~~d~~~lp---------f~d 336 (430)
.++.|+++|||-=+.+.++.. .+.+++-+ |. +..++..+ + .+...++..|+.. . |..
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~~~~~~v~ev--D~-P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~ 177 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDWPTGTTVYEI--DQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDP 177 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCCCTTCEEEEE--EC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCT
T ss_pred CCCeEEEeCCCCCchhhhccCCCCcEEEEc--CC-HHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCC
Confidence 346789999999999888873 35777766 43 55443322 1 2235667777654 2 111
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
..-=++++-.++ ++++++....++..+...+.||+++++++..
T Consensus 178 ~~Pt~~i~Egvl-~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~ 220 (310)
T 2uyo_A 178 SARTAWLAEGLL-MYLPATAQDGLFTEIGGLSAVGSRIAVETSP 220 (310)
T ss_dssp TSCEEEEECSCG-GGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred CCCEEEEEechH-hhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 222345554555 6777777889999999999999999998654
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=88.54 E-value=3.2 Score=40.69 Aligned_cols=91 Identities=12% Similarity=-0.057 Sum_probs=59.6
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEccc--ccCC-----CCCCceeEEEEccc
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVS--QRLP-----FFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~--~~lp-----f~d~sfDlV~~~~~ 347 (430)
.+||-+|+|. |.+++.+++. |+ +|+++ +.++.-.+.+++-|.-.++.... +.+. ..++.+|+|+..-.
T Consensus 193 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~--~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g 270 (373)
T 1p0f_A 193 STCAVFGLGGVGFSAIVGCKAAGASRIIGV--GTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG 270 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEE--CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEE--CCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence 4568888864 7778888776 88 78888 56677778888777633332211 1110 11247999997421
Q ss_pred hhhcCCchhHHHHHHHHHHhccCC-cEEEEeec
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPG-GIFWLDRF 379 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPG-G~lvl~~f 379 (430)
. ...+....++|++| |.+++...
T Consensus 271 ~---------~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 271 R---------IETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp C---------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred C---------HHHHHHHHHHHhcCCCEEEEEcc
Confidence 1 23577888999999 99987653
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=88.52 E-value=2.3 Score=41.86 Aligned_cols=91 Identities=13% Similarity=0.031 Sum_probs=59.9
Q ss_pred EEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcc--cccCC-----CCCCceeEEEEccch
Q 043503 279 IGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISV--SQRLP-----FFENTLDIVHSMHVL 348 (430)
Q Consensus 279 ~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d--~~~lp-----f~d~sfDlV~~~~~L 348 (430)
+||=+|+|. |.++..+++. |+ +|+++ +.++.-++.+++-|.-.++... ...+. ..++.+|+|+..-.-
T Consensus 196 ~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~--~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~ 273 (378)
T 3uko_A 196 NVAIFGLGTVGLAVAEGAKTAGASRIIGI--DIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGN 273 (378)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEE--CSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCC
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCCC
Confidence 458788864 7788888876 88 78888 6566677888877764333221 11111 123479999974221
Q ss_pred hhcCCchhHHHHHHHHHHhccCC-cEEEEeecc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPG-GIFWLDRFF 380 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPG-G~lvl~~f~ 380 (430)
...+....+.|++| |.+++....
T Consensus 274 ---------~~~~~~~~~~l~~g~G~iv~~G~~ 297 (378)
T 3uko_A 274 ---------VSVMRAALECCHKGWGTSVIVGVA 297 (378)
T ss_dssp ---------HHHHHHHHHTBCTTTCEEEECSCC
T ss_pred ---------HHHHHHHHHHhhccCCEEEEEccc
Confidence 24678889999997 999876543
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=88.51 E-value=2 Score=41.37 Aligned_cols=91 Identities=8% Similarity=-0.026 Sum_probs=56.6
Q ss_pred ccEEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEccc-ccCC-----CCCCceeEEEEccc
Q 043503 277 IRIGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVS-QRLP-----FFENTLDIVHSMHV 347 (430)
Q Consensus 277 ir~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~-~~lp-----f~d~sfDlV~~~~~ 347 (430)
.++||-.|+ |.|..++.++.. |++|+++ +.++...+.+++.|.-..+.... +.+. ...+.+|+|+.+-.
T Consensus 146 g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~--~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g 223 (333)
T 1v3u_A 146 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGA--AGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG 223 (333)
T ss_dssp SCEEEEESTTBHHHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred CCEEEEecCCCcHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence 356799997 566666666654 9999988 44566667675556422221111 1110 11247999988432
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
. ..+....+.|+|||.+++...
T Consensus 224 ~----------~~~~~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 224 G----------EFLNTVLSQMKDFGKIAICGA 245 (333)
T ss_dssp H----------HHHHHHHTTEEEEEEEEECCC
T ss_pred h----------HHHHHHHHHHhcCCEEEEEec
Confidence 1 246788899999999987653
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=88.48 E-value=1.2 Score=43.85 Aligned_cols=91 Identities=11% Similarity=0.013 Sum_probs=59.3
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L~ 349 (430)
.+||-+|+|. |.++..+++. |++|+++ +.++.-.+.+++-|.-.++..+...+. .....+|+|+..-.
T Consensus 191 ~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~--~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g-- 266 (363)
T 3uog_A 191 DRVVVQGTGGVALFGLQIAKATGAEVIVT--SSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAG-- 266 (363)
T ss_dssp CEEEEESSBHHHHHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETT--
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEE--ecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC--
Confidence 4568888765 6777777765 9999988 556677777877776433332111111 12347999997422
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
.. .+....++|+|||.+++....
T Consensus 267 ---~~-----~~~~~~~~l~~~G~iv~~G~~ 289 (363)
T 3uog_A 267 ---GA-----GLGQSLKAVAPDGRISVIGVL 289 (363)
T ss_dssp ---SS-----CHHHHHHHEEEEEEEEEECCC
T ss_pred ---hH-----HHHHHHHHhhcCCEEEEEecC
Confidence 11 356778899999999876543
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.31 E-value=2.9 Score=41.06 Aligned_cols=91 Identities=13% Similarity=0.024 Sum_probs=59.1
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEccc--ccCC-----CCCCceeEEEEccc
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVS--QRLP-----FFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~--~~lp-----f~d~sfDlV~~~~~ 347 (430)
.+||-+|+|. |.++..+++. |+ +|+++ +.++.-.+.+++-|.-.++.... +.+. ...+.+|+|+..-.
T Consensus 194 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~--~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g 271 (374)
T 1cdo_A 194 STCAVFGLGAVGLAAVMGCHSAGAKRIIAV--DLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG 271 (374)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEE--CSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 4568888764 6777777775 88 78888 66677778888777633332111 1111 11236999987422
Q ss_pred hhhcCCchhHHHHHHHHHHhccCC-cEEEEeec
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPG-GIFWLDRF 379 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPG-G~lvl~~f 379 (430)
. ...+....++|+|| |.+++...
T Consensus 272 ~---------~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 272 N---------VGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp C---------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred C---------HHHHHHHHHHhhcCCcEEEEEcC
Confidence 1 23577889999999 99987653
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=88.13 E-value=3.6 Score=40.39 Aligned_cols=91 Identities=10% Similarity=-0.009 Sum_probs=58.9
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEccc--ccCC-----CCCCceeEEEEccc
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVS--QRLP-----FFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~--~~lp-----f~d~sfDlV~~~~~ 347 (430)
.+||-+|+|. |.+++.+++. |+ +|+++ +.++.-.+.+++-|.-.++.... +.+. ..++.+|+|+..-.
T Consensus 193 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~--~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g 270 (374)
T 2jhf_A 193 STCAVFGLGGVGLSVIMGCKAAGAARIIGV--DINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG 270 (374)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEE--CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence 4568888765 6777777765 88 78888 65677778887777633332211 1110 11247999987421
Q ss_pred hhhcCCchhHHHHHHHHHHhccCC-cEEEEeec
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPG-GIFWLDRF 379 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPG-G~lvl~~f 379 (430)
. ...+....++|++| |.+++...
T Consensus 271 ~---------~~~~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 271 R---------LDTMVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp C---------HHHHHHHHHHBCTTTCEEEECSC
T ss_pred C---------HHHHHHHHHHhhcCCcEEEEecc
Confidence 1 23577888999999 99987553
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.10 E-value=1.4 Score=43.72 Aligned_cols=98 Identities=13% Similarity=0.116 Sum_probs=62.1
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEccccc-----CC--CCCCceeEEEEccc
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQR-----LP--FFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~-----lp--f~d~sfDlV~~~~~ 347 (430)
.+||-+|+|. |.++..+++. |+ +|+++ +.++.-++.+++-|. ..+...... +. .....+|+|+..-.
T Consensus 187 ~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~--~~~~~~~~~a~~lGa-~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G 263 (398)
T 1kol_A 187 STVYVAGAGPVGLAAAASARLLGAAVVIVG--DLNPARLAHAKAQGF-EIADLSLDTPLHEQIAALLGEPEVDCAVDAVG 263 (398)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHTTC-EEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCeEEEE--cCCHHHHHHHHHcCC-cEEccCCcchHHHHHHHHhCCCCCCEEEECCC
Confidence 3458899866 7888888876 87 68877 566777888887776 333221111 10 12246999998533
Q ss_pred hhh--------cCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 348 LSN--------WIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 348 L~~--------~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
... ..++ ....+.+..++|++||.+++....
T Consensus 264 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~G~iv~~G~~ 302 (398)
T 1kol_A 264 FEARGHGHEGAKHEA--PATVLNSLMQVTRVAGKIGIPGLY 302 (398)
T ss_dssp TTCBCSSTTGGGSBC--TTHHHHHHHHHEEEEEEEEECSCC
T ss_pred Ccccccccccccccc--hHHHHHHHHHHHhcCCEEEEeccc
Confidence 210 0111 224688899999999999876543
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=88.10 E-value=3.4 Score=40.44 Aligned_cols=91 Identities=10% Similarity=0.000 Sum_probs=59.1
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEccc--ccCC-----CCCCceeEEEEccc
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVS--QRLP-----FFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~--~~lp-----f~d~sfDlV~~~~~ 347 (430)
.+||-+|+|. |.++..+++. |+ +|+++ +.++.-.+.+++-|.-.++.... +.+. ..++.+|+|+..-.
T Consensus 192 ~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~--~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g 269 (373)
T 2fzw_A 192 SVCAVFGLGGVGLAVIMGCKVAGASRIIGV--DINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG 269 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEE--CSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence 4568888765 6777777776 88 78888 55677778887777633332211 1110 11247999987422
Q ss_pred hhhcCCchhHHHHHHHHHHhccCC-cEEEEeec
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPG-GIFWLDRF 379 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPG-G~lvl~~f 379 (430)
. ...+....+.|+|| |.+++...
T Consensus 270 ~---------~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 270 N---------VKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp C---------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred c---------HHHHHHHHHhhccCCcEEEEEec
Confidence 1 23577889999999 99987653
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=87.78 E-value=1.2 Score=43.06 Aligned_cols=91 Identities=10% Similarity=0.004 Sum_probs=58.4
Q ss_pred cEEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHH-HhcCCeeEEEcccccCC-----CCCCceeEEEEccch
Q 043503 278 RIGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFI-ASRGLISMHISVSQRLP-----FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a-~~rg~i~~~~~d~~~lp-----f~d~sfDlV~~~~~L 348 (430)
++||-+|+ |.|..+..++.. |++|+++ +.++.-.+.+ ++-|.-.++......+. ...+.+|+|+.+-.-
T Consensus 151 ~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~ 228 (336)
T 4b7c_A 151 ETVVISGAAGAVGSVAGQIARLKGCRVVGI--AGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGG 228 (336)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCc
Confidence 45699997 567777777765 9999988 5556666776 55565333322111110 113579999884221
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
..+....+.|++||.+++....
T Consensus 229 ----------~~~~~~~~~l~~~G~iv~~G~~ 250 (336)
T 4b7c_A 229 ----------EILDTVLTRIAFKARIVLCGAI 250 (336)
T ss_dssp ----------HHHHHHHTTEEEEEEEEECCCG
T ss_pred ----------chHHHHHHHHhhCCEEEEEeec
Confidence 2577888999999999886543
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.70 E-value=2.6 Score=42.07 Aligned_cols=97 Identities=9% Similarity=-0.017 Sum_probs=57.0
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccch
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L 348 (430)
.+||=+|+|. |.++..+++. |+ +|+++ +.++.-++.+++-|.-.++......+. .....+|+|+-.-.-
T Consensus 215 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~--~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~ 292 (404)
T 3ip1_A 215 DNVVILGGGPIGLAAVAILKHAGASKVILS--EPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGV 292 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEE--CSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCC
Confidence 3457788754 6777777776 88 88888 666777888887776433322111111 123469999974222
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
. .......+.-+.+++++||.+++....
T Consensus 293 ~----~~~~~~~~~~l~~~~~~~G~iv~~G~~ 320 (404)
T 3ip1_A 293 P----QLVWPQIEEVIWRARGINATVAIVARA 320 (404)
T ss_dssp H----HHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred c----HHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence 1 001222233333555999999886543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=87.58 E-value=2 Score=41.38 Aligned_cols=91 Identities=14% Similarity=0.004 Sum_probs=59.5
Q ss_pred cEEEEEc--CCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccch
Q 043503 278 RIGLDIG--GGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIG--cGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L 348 (430)
.+||-+| +|.|..+..+++. |++|+++ +.++.-++.+++.|.-..+......+. .....+|+|+.+-.-
T Consensus 142 ~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~--~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~ 219 (325)
T 3jyn_A 142 EIILFHAAAGGVGSLACQWAKALGAKLIGT--VSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ 219 (325)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHHTCEEEEE--ESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCG
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCCh
Confidence 4568888 4567778777776 9999988 456667777777775333322211111 123579999984322
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
..+....+.|+|||.+++....
T Consensus 220 ----------~~~~~~~~~l~~~G~iv~~g~~ 241 (325)
T 3jyn_A 220 ----------DTWLTSLDSVAPRGLVVSFGNA 241 (325)
T ss_dssp ----------GGHHHHHTTEEEEEEEEECCCT
T ss_pred ----------HHHHHHHHHhcCCCEEEEEecC
Confidence 2466788999999999886543
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=87.55 E-value=1.6 Score=42.55 Aligned_cols=91 Identities=13% Similarity=0.093 Sum_probs=58.3
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccch
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L 348 (430)
.+||-+|+|. |.+++.+++. |+ +|+++ +.++...+.+++.|.-.++......+. .....+|+|+..-..
T Consensus 169 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~--~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~ 246 (348)
T 2d8a_A 169 KSVLITGAGPLGLLGIAVAKASGAYPVIVS--EPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA 246 (348)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSEEEE--CSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence 3458898853 6777777765 88 89888 556777777777675333322111110 122469999974221
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
...+....+.|++||.+++...
T Consensus 247 ---------~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 247 ---------PKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp ---------HHHHHHHHHHEEEEEEEEECCC
T ss_pred ---------HHHHHHHHHHHhcCCEEEEEcc
Confidence 2357788899999999987543
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=87.51 E-value=1.8 Score=42.54 Aligned_cols=91 Identities=19% Similarity=0.164 Sum_probs=59.5
Q ss_pred cEEEEEc--CCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC-----CCCCceeEEEEccchh
Q 043503 278 RIGLDIG--GGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP-----FFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIG--cGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp-----f~d~sfDlV~~~~~L~ 349 (430)
.+||-+| +|.|..+..+++. |++|+++ +.++...+.+++.|.-.++......+. ...+.+|+|+..-.-
T Consensus 165 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~--~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~- 241 (362)
T 2c0c_A 165 KKVLVTAAAGGTGQFAMQLSKKAKCHVIGT--CSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGG- 241 (362)
T ss_dssp CEEEETTTTBTTHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCT-
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCEEEEE--ECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCH-
Confidence 4569898 5678888888775 8999888 455666777777665333322111110 112469999874221
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
..+..+.++|++||.+++....
T Consensus 242 ---------~~~~~~~~~l~~~G~iv~~g~~ 263 (362)
T 2c0c_A 242 ---------AMFDLAVDALATKGRLIVIGFI 263 (362)
T ss_dssp ---------HHHHHHHHHEEEEEEEEECCCG
T ss_pred ---------HHHHHHHHHHhcCCEEEEEeCC
Confidence 3577888999999999876543
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.38 E-value=1 Score=44.50 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=57.9
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcc----cccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISV----SQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d----~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+||-+|+|. |.++..+++. |++|+++ +.++...+.+++-|.-.++... .+.+. +.+|+|+..-..
T Consensus 196 ~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~--~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~---~g~Dvvid~~g~--- 267 (369)
T 1uuf_A 196 KKVGVVGIGGLGHMGIKLAHAMGAHVVAF--TTSEAKREAAKALGADEVVNSRNADEMAAHL---KSFDFILNTVAA--- 267 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEE--ESSGGGHHHHHHHTCSEEEETTCHHHHHTTT---TCEEEEEECCSS---
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHcCCcEEeccccHHHHHHhh---cCCCEEEECCCC---
Confidence 4468899875 7788888775 8998888 4556667778777753333221 11221 579999974222
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
+. .+....++|+|||.+++...
T Consensus 268 -~~-----~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 268 -PH-----NLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp -CC-----CHHHHHTTEEEEEEEEECCC
T ss_pred -HH-----HHHHHHHHhccCCEEEEecc
Confidence 11 35677889999999987543
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=87.15 E-value=2.7 Score=40.55 Aligned_cols=90 Identities=11% Similarity=-0.030 Sum_probs=58.2
Q ss_pred ccEEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccc
Q 043503 277 IRIGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHV 347 (430)
Q Consensus 277 ir~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~ 347 (430)
-++||-+|+ |.|..+..+++. |++|+++ +.++.-++.+++-|.-.++......+. .....+|+|+.+-.
T Consensus 149 g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~--~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g 226 (334)
T 3qwb_A 149 GDYVLLFAAAGGVGLILNQLLKMKGAHTIAV--ASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVG 226 (334)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCG
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCC
Confidence 345698884 556777777765 9999988 455666777777775333332211111 12346999998432
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
- ..+....+.|+|||.+++..
T Consensus 227 ~----------~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 227 K----------DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp G----------GGHHHHHHHEEEEEEEEECC
T ss_pred h----------HHHHHHHHHhccCCEEEEEc
Confidence 1 24667788999999998754
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=86.96 E-value=3.8 Score=40.25 Aligned_cols=91 Identities=14% Similarity=-0.002 Sum_probs=58.9
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEccc--ccCC-----CCCCceeEEEEccc
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVS--QRLP-----FFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~--~~lp-----f~d~sfDlV~~~~~ 347 (430)
.+||-+|+|. |.+++.+++. |+ +|+++ +.++.-.+.+++-|.-.++.... +.+. ..++.+|+|+..-.
T Consensus 197 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~--~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G 274 (376)
T 1e3i_A 197 STCAVFGLGCVGLSAIIGCKIAGASRIIAI--DINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG 274 (376)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEE--CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence 4568888764 6777777776 88 78888 55677778887777633332111 1110 11237999987421
Q ss_pred hhhcCCchhHHHHHHHHHHhccCC-cEEEEeec
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPG-GIFWLDRF 379 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPG-G~lvl~~f 379 (430)
. ...+....+.|++| |.+++...
T Consensus 275 ~---------~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 275 T---------AQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp C---------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred C---------HHHHHHHHHHhhcCCCEEEEECC
Confidence 1 23577889999999 99987543
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=86.83 E-value=1.4 Score=42.30 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=55.3
Q ss_pred cEEEEEcCC-ccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCch
Q 043503 278 RIGLDIGGG-TGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 278 r~VLDIGcG-tG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
.+||=+|+| .|.++..+++. |++|++++ ++.-.+.+++-|.-.++ .|.+.+ .+.+|+|+-.-.-
T Consensus 144 ~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~---~~~~~~~~~~lGa~~v~-~d~~~v---~~g~Dvv~d~~g~------- 209 (315)
T 3goh_A 144 REVLIVGFGAVNNLLTQMLNNAGYVVDLVS---ASLSQALAAKRGVRHLY-REPSQV---TQKYFAIFDAVNS------- 209 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEC---SSCCHHHHHHHTEEEEE-SSGGGC---CSCEEEEECC----------
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEE---ChhhHHHHHHcCCCEEE-cCHHHh---CCCccEEEECCCc-------
Confidence 456888885 37888888876 99999884 55667778777763333 233333 5679999874221
Q ss_pred hHHHHHHHHHHhccCCcEEEEe
Q 043503 356 MLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
..+....++|+|||.+++.
T Consensus 210 ---~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 210 ---QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp -------TTGGGEEEEEEEEEE
T ss_pred ---hhHHHHHHHhcCCCEEEEE
Confidence 1125678999999999875
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=86.12 E-value=2 Score=41.74 Aligned_cols=90 Identities=11% Similarity=-0.057 Sum_probs=57.7
Q ss_pred cEEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccC----C--CCCCceeEEEEccch
Q 043503 278 RIGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRL----P--FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l----p--f~d~sfDlV~~~~~L 348 (430)
.+||-+|+ |.|..+..++.. |++|+++ +.++...+.+++.|.-.++......+ . .....+|+|+..-.
T Consensus 168 ~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~--~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g- 244 (343)
T 2eih_A 168 DDVLVMAAGSGVSVAAIQIAKLFGARVIAT--AGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTG- 244 (343)
T ss_dssp CEEEECSTTSTTHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEESSC-
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-
Confidence 46799997 678888887765 8999888 44566667776656432222111111 0 11247999998532
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
. . .+..+.+.|++||.+++...
T Consensus 245 ~----~-----~~~~~~~~l~~~G~~v~~g~ 266 (343)
T 2eih_A 245 A----L-----YFEGVIKATANGGRIAIAGA 266 (343)
T ss_dssp S----S-----SHHHHHHHEEEEEEEEESSC
T ss_pred H----H-----HHHHHHHhhccCCEEEEEec
Confidence 1 1 35677889999999987543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=85.65 E-value=1.7 Score=42.27 Aligned_cols=88 Identities=18% Similarity=0.107 Sum_probs=57.3
Q ss_pred cEEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccch
Q 043503 278 RIGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L 348 (430)
++||-+|+ |.|..+..+++. |++|++++ .++.-.+.+++-|.-.++... ..+. .....+|+|+..-.-
T Consensus 161 ~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~--~~~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~Dvvid~~g~ 237 (342)
T 4eye_A 161 ETVLVLGAAGGIGTAAIQIAKGMGAKVIAVV--NRTAATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVDMVVDPIGG 237 (342)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEE--SSGGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEEEEEESCC-
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEe--CCHHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCceEEEECCch
Confidence 45698986 567788777776 99999884 455666777776763333222 2211 123479999984322
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
..+....+.|++||.+++..
T Consensus 238 ----------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 238 ----------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp -----------CHHHHHHTEEEEEEEEEC-
T ss_pred ----------hHHHHHHHhhcCCCEEEEEE
Confidence 13667889999999998754
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=85.27 E-value=7.8 Score=37.43 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=58.0
Q ss_pred cEEEEEcCCc--cHHHHHHHHcCC--EEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCC
Q 043503 278 RIGLDIGGGT--GTFAARMRERNV--TIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 278 r~VLDIGcGt--G~~a~~La~~g~--~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~ 353 (430)
.+|.=||+|. +.++..+++.|. +|+++ |.++...+.+.+.|.+.-...+...+ .-...|+|+.. ++
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~--dr~~~~~~~a~~~G~~~~~~~~~~~~--~~~~aDvVila------vp 103 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGY--DINPESISKAVDLGIIDEGTTSIAKV--EDFSPDFVMLS------SP 103 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEE--CSCHHHHHHHHHTTSCSEEESCTTGG--GGGCCSEEEEC------SC
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEE--ECCHHHHHHHHHCCCcchhcCCHHHH--hhccCCEEEEe------CC
Confidence 4557788875 356777777788 89888 66677777777777653333333320 01357999874 23
Q ss_pred chhHHHHHHHHHHhccCCcEEE
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lv 375 (430)
......++.++...++||..++
T Consensus 104 ~~~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 104 VRTFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp GGGHHHHHHHHHHHSCTTCEEE
T ss_pred HHHHHHHHHHHhhccCCCcEEE
Confidence 3346778899999999987553
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.20 E-value=2.2 Score=42.25 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=59.4
Q ss_pred cEEEEEcCC-ccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhcCCeeEEEcc---ccc----CC--CCCCceeEEEEc
Q 043503 278 RIGLDIGGG-TGTFAARMRER-N-VTIITTSLNLDGPFNSFIASRGLISMHISV---SQR----LP--FFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcG-tG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d---~~~----lp--f~d~sfDlV~~~ 345 (430)
.+||-+|+| .|.+++.+++. | .+|+++ +.++.-.+.+++-|.-.++... ... +. .....+|+|+..
T Consensus 197 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~--~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~ 274 (380)
T 1vj0_A 197 KTVVIQGAGPLGLFGVVIARSLGAENVIVI--AGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEA 274 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEE--ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEEEC
Confidence 456888865 46777777776 8 599988 5567777888877763333322 111 11 122369999974
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
-.. + ..+....++|+|||.+++....
T Consensus 275 ~g~----~-----~~~~~~~~~l~~~G~iv~~G~~ 300 (380)
T 1vj0_A 275 TGD----S-----RALLEGSELLRRGGFYSVAGVA 300 (380)
T ss_dssp SSC----T-----THHHHHHHHEEEEEEEEECCCC
T ss_pred CCC----H-----HHHHHHHHHHhcCCEEEEEecC
Confidence 221 1 2467888999999999886544
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=85.16 E-value=2.3 Score=41.29 Aligned_cols=91 Identities=13% Similarity=0.066 Sum_probs=61.0
Q ss_pred cEEEEEcCCc-cHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccch
Q 043503 278 RIGLDIGGGT-GTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L 348 (430)
.+||-+|+|. |.++..+++. +.+|+++ +.++.-.+.+++-|.-.++..+. .+. .....+|+|+..-.-
T Consensus 173 ~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~--~~~~~~~~~~~~lGa~~~i~~~~-~~~~~v~~~t~g~g~d~v~d~~G~ 249 (345)
T 3jv7_A 173 STAVVIGVGGLGHVGIQILRAVSAARVIAV--DLDDDRLALAREVGADAAVKSGA-GAADAIRELTGGQGATAVFDFVGA 249 (345)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEE--ESCHHHHHHHHHTTCSEEEECST-THHHHHHHHHGGGCEEEEEESSCC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHcCCCEEEcCCC-cHHHHHHHHhCCCCCeEEEECCCC
Confidence 3458888865 7788888875 6788888 56677788888877644433221 110 112379999984211
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
...+....++|+|||.+++....
T Consensus 250 ---------~~~~~~~~~~l~~~G~iv~~G~~ 272 (345)
T 3jv7_A 250 ---------QSTIDTAQQVVAVDGHISVVGIH 272 (345)
T ss_dssp ---------HHHHHHHHHHEEEEEEEEECSCC
T ss_pred ---------HHHHHHHHHHHhcCCEEEEECCC
Confidence 23678899999999999876543
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.12 E-value=1.5 Score=42.63 Aligned_cols=91 Identities=14% Similarity=0.060 Sum_probs=56.7
Q ss_pred cEEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcc-cccCC-----CCCCceeEEEEccch
Q 043503 278 RIGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISV-SQRLP-----FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d-~~~lp-----f~d~sfDlV~~~~~L 348 (430)
++||-+|+ |.|..+..++.. |.+|++++. ++...+.+++.|.-.++... .+.+. ..++.+|+|+.+-..
T Consensus 171 ~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~--~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~ 248 (347)
T 2hcy_A 171 HWVAISGAAGGLGSLAVQYAKAMGYRVLGIDG--GEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS 248 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC--STTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCcEEEEcC--CHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence 45799998 567777777664 899998854 44555666665652222111 11111 011269999884321
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
...+....+.|++||.+++...
T Consensus 249 ---------~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 249 ---------EAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp ---------HHHHHHHTTSEEEEEEEEECCC
T ss_pred ---------HHHHHHHHHHHhcCCEEEEEeC
Confidence 2367888999999999987543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=84.65 E-value=2.3 Score=39.94 Aligned_cols=77 Identities=8% Similarity=-0.054 Sum_probs=47.5
Q ss_pred eEEEccccc-CC-CCCCceeEEEEccchhhcCC-------c----hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHH
Q 043503 323 SMHISVSQR-LP-FFENTLDIVHSMHVLSNWIP-------D----SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNET 389 (430)
Q Consensus 323 ~~~~~d~~~-lp-f~d~sfDlV~~~~~L~~~~~-------d----~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~ 389 (430)
.++.+|+.. +. +++++||+|++......-.. . ..+...+.++.|+|+|||.+++.. .......
T Consensus 6 ~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~----~d~~~~~ 81 (260)
T 1g60_A 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN----TPFNCAF 81 (260)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE----CHHHHHH
T ss_pred eEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc----CcHHHHH
Confidence 456666422 22 34678999999644311000 0 135678889999999999998863 1112234
Q ss_pred HHHHHHHcCCEEEE
Q 043503 390 YVPMLDRIGFKKLR 403 (430)
Q Consensus 390 ~~~ll~~~Gfk~l~ 403 (430)
+..++...||....
T Consensus 82 ~~~~~~~~gf~~~~ 95 (260)
T 1g60_A 82 ICQYLVSKGMIFQN 95 (260)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHHHhhccceeE
Confidence 55677889998665
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=84.37 E-value=2.9 Score=40.46 Aligned_cols=89 Identities=12% Similarity=0.105 Sum_probs=57.1
Q ss_pred cEEEEEcCC-ccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC-----CCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGG-TGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP-----FFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcG-tG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp-----f~d~sfDlV~~~~~L~~ 350 (430)
.+||-+|+| .|..+..+++. |++|+++ +.++...+.+++-|.-.++......+. .. +.+|+|+..-..
T Consensus 166 ~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~--~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~-~~~d~vid~~g~-- 240 (339)
T 1rjw_A 166 EWVAIYGIGGLGHVAVQYAKAMGLNVVAV--DIGDEKLELAKELGADLVVNPLKEDAAKFMKEKV-GGVHAAVVTAVS-- 240 (339)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEE--CSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHH-SSEEEEEESSCC--
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHh-CCCCEEEECCCC--
Confidence 346888875 47777777765 8999988 666777777776665322211111110 01 469999874221
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+....++|++||.+++..
T Consensus 241 -------~~~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 241 -------KPAFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp -------HHHHHHHHHHEEEEEEEEECC
T ss_pred -------HHHHHHHHHHhhcCCEEEEec
Confidence 235778889999999998754
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=84.13 E-value=2.6 Score=41.23 Aligned_cols=89 Identities=19% Similarity=0.159 Sum_probs=55.9
Q ss_pred cEEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccC----C--CCCCceeEEEEccch
Q 043503 278 RIGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRL----P--FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l----p--f~d~sfDlV~~~~~L 348 (430)
++||-.|+ |.|..+..++.. |++|+++ +.++...+.+++.|.-..+......+ . .....+|+|+.+-.-
T Consensus 172 ~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~--~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G~ 249 (351)
T 1yb5_A 172 ESVLVHGASGGVGLAACQIARAYGLKILGT--AGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLAN 249 (351)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEE--eCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEECCCh
Confidence 45699996 566777776665 9999888 44566666776666532222211111 0 123469999884221
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
..+....++|+|||.+++..
T Consensus 250 ----------~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 250 ----------VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp ----------HHHHHHHHHEEEEEEEEECC
T ss_pred ----------HHHHHHHHhccCCCEEEEEe
Confidence 24667889999999998754
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=84.03 E-value=3.1 Score=39.75 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=59.9
Q ss_pred EEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEc-ccccC-CCCCCceeEEEEccchhhcCCc
Q 043503 280 GLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHIS-VSQRL-PFFENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 280 VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~-d~~~l-pf~d~sfDlV~~~~~L~~~~~d 354 (430)
||=+|+ |.|.++..+++. |++|+++ +.++.-.+.+++-|.-.++.. +.... ....+.+|+|+..-. .
T Consensus 150 VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~--~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g------~ 221 (324)
T 3nx4_A 150 VVVTGASGGVGSTAVALLHKLGYQVAAV--SGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVG------D 221 (324)
T ss_dssp EEESSTTSHHHHHHHHHHHHTTCCEEEE--ESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSC------H
T ss_pred EEEECCCcHHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCC------c
Confidence 588885 568888888876 9999988 445667788877775333322 11111 123457999887321 1
Q ss_pred hhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 355 SMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
..+....+.|+|||.+++....
T Consensus 222 ----~~~~~~~~~l~~~G~iv~~G~~ 243 (324)
T 3nx4_A 222 ----KVLAKVLAQMNYGGCVAACGLA 243 (324)
T ss_dssp ----HHHHHHHHTEEEEEEEEECCCT
T ss_pred ----HHHHHHHHHHhcCCEEEEEecC
Confidence 2688899999999999886543
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=83.97 E-value=4.3 Score=39.81 Aligned_cols=89 Identities=22% Similarity=0.264 Sum_probs=59.8
Q ss_pred ccEEEEEc--CCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccC-----CCCCCceeEEEEccc
Q 043503 277 IRIGLDIG--GGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRL-----PFFENTLDIVHSMHV 347 (430)
Q Consensus 277 ir~VLDIG--cGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l-----pf~d~sfDlV~~~~~ 347 (430)
..+||=+| +|.|.++..+++. +.+|+++ +.++.-.+.+++-|.-.++... +.+ ....+.+|+|+..-.
T Consensus 172 g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~--~~~~~~~~~~~~lGad~vi~~~-~~~~~~v~~~~~~g~Dvvid~~g 248 (363)
T 4dvj_A 172 APAILIVGGAGGVGSIAVQIARQRTDLTVIAT--ASRPETQEWVKSLGAHHVIDHS-KPLAAEVAALGLGAPAFVFSTTH 248 (363)
T ss_dssp EEEEEEESTTSHHHHHHHHHHHHHCCSEEEEE--CSSHHHHHHHHHTTCSEEECTT-SCHHHHHHTTCSCCEEEEEECSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhcCCEEEEE--eCCHHHHHHHHHcCCCEEEeCC-CCHHHHHHHhcCCCceEEEECCC
Confidence 34568887 4558888888874 7899988 6667777888777753333211 111 123457999987422
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
-...+..+.++|+|||.+++.
T Consensus 249 ---------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 249 ---------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp ---------HHHHHHHHHHHSCTTCEEEEC
T ss_pred ---------chhhHHHHHHHhcCCCEEEEE
Confidence 234678889999999999874
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=83.63 E-value=2.2 Score=41.46 Aligned_cols=90 Identities=18% Similarity=0.162 Sum_probs=58.8
Q ss_pred cEEEEEcCCc-cHHHHHHHH-c--CCEEEEEecCCChhHHHHHHhcCCeeEEEccc-----ccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGT-GTFAARMRE-R--NVTIITTSLNLDGPFNSFIASRGLISMHISVS-----QRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~-~--g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~-----~~lpf~d~sfDlV~~~~~L 348 (430)
.+||-+|+|. |.++..+++ . |++|+++ +.++.-.+.+++.|.-.++.... ..+. ....+|+|+..-..
T Consensus 172 ~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~--~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~-~g~g~D~vid~~g~ 248 (344)
T 2h6e_A 172 PVVIVNGIGGLAVYTIQILKALMKNITIVGI--SRSKKHRDFALELGADYVSEMKDAESLINKLT-DGLGASIAIDLVGT 248 (344)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEE--CSCHHHHHHHHHHTCSEEECHHHHHHHHHHHH-TTCCEEEEEESSCC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCEEEEE--eCCHHHHHHHHHhCCCEEeccccchHHHHHhh-cCCCccEEEECCCC
Confidence 3469899864 677777765 4 8898887 66677778887777533332111 1111 12379999984221
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
...+..+.++|+|||.+++...
T Consensus 249 ---------~~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 249 ---------EETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp ---------HHHHHHHHHHEEEEEEEEECCC
T ss_pred ---------hHHHHHHHHHhhcCCEEEEeCC
Confidence 2357788899999999987543
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.41 E-value=2.6 Score=40.46 Aligned_cols=91 Identities=14% Similarity=-0.035 Sum_probs=56.4
Q ss_pred ccEEEEEc--CCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccC----C--CCCCceeEEEEccc
Q 043503 277 IRIGLDIG--GGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRL----P--FFENTLDIVHSMHV 347 (430)
Q Consensus 277 ir~VLDIG--cGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l----p--f~d~sfDlV~~~~~ 347 (430)
-++||-.| +|.|..+..++.. |++|+++ +.++...+.+++.|.-..+......+ . .....+|+|+.+-.
T Consensus 141 g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g 218 (327)
T 1qor_A 141 DEQFLFHAAAGGVGLIACQWAKALGAKLIGT--VGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG 218 (327)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHHTCEEEEE--ESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCc
Confidence 35679998 4566666666665 9999988 44566666666655422222111111 0 12346999998533
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
. ..+....++|++||.+++...
T Consensus 219 -~---------~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 219 -R---------DTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp -G---------GGHHHHHHTEEEEEEEEECCC
T ss_pred -h---------HHHHHHHHHhcCCCEEEEEec
Confidence 1 246788899999999987653
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=83.22 E-value=3.4 Score=40.32 Aligned_cols=90 Identities=12% Similarity=0.104 Sum_probs=56.8
Q ss_pred cEEEEEcCCc-cHHH-HHHH-Hc-CCE-EEEEecCCChh---HHHHHHhcCCeeEEEcccccCC----CCCCceeEEEEc
Q 043503 278 RIGLDIGGGT-GTFA-ARMR-ER-NVT-IITTSLNLDGP---FNSFIASRGLISMHISVSQRLP----FFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGt-G~~a-~~La-~~-g~~-Vv~vdiD~s~~---~le~a~~rg~i~~~~~d~~~lp----f~d~sfDlV~~~ 345 (430)
.+||-+|+|. |.++ ..++ +. |++ |++++. ++. -.+.+++-|.-.+ ....+.+. . .+.+|+|+-.
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~--~~~~~~~~~~~~~lGa~~v-~~~~~~~~~i~~~-~gg~Dvvid~ 249 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGR--RDRPDPTIDIIEELDATYV-DSRQTPVEDVPDV-YEQMDFIYEA 249 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEEC--CCSSCHHHHHHHHTTCEEE-ETTTSCGGGHHHH-SCCEEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeC--CcccHHHHHHHHHcCCccc-CCCccCHHHHHHh-CCCCCEEEEC
Confidence 3458888743 7777 7888 55 886 888854 344 5677777675333 21111110 1 2379999874
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
-.. ...+.+..++|+|||.+++....
T Consensus 250 ~g~---------~~~~~~~~~~l~~~G~iv~~g~~ 275 (357)
T 2b5w_A 250 TGF---------PKHAIQSVQALAPNGVGALLGVP 275 (357)
T ss_dssp SCC---------HHHHHHHHHHEEEEEEEEECCCC
T ss_pred CCC---------hHHHHHHHHHHhcCCEEEEEeCC
Confidence 221 23577889999999999886544
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.90 E-value=18 Score=34.54 Aligned_cols=93 Identities=14% Similarity=0.054 Sum_probs=58.7
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CCEE-EEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccch
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NVTI-ITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~~V-v~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L 348 (430)
.+||=.|+|. |.++..+++. |..+ +++ +.++.-++.+++-|....+...-...+ .....+|+|+..-..
T Consensus 162 ~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~--~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~G~ 239 (346)
T 4a2c_A 162 KNVIIIGAGTIGLLAIQCAVALGAKSVTAI--DISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETAGV 239 (346)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEECSCS
T ss_pred CEEEEECCCCcchHHHHHHHHcCCcEEEEE--echHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcccccccccc
Confidence 4457788865 4566666665 7654 555 666777888888887544433221111 123457888774211
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
...+....++|++||.+++.....
T Consensus 240 ---------~~~~~~~~~~l~~~G~~v~~g~~~ 263 (346)
T 4a2c_A 240 ---------PQTVELAVEIAGPHAQLALVGTLH 263 (346)
T ss_dssp ---------HHHHHHHHHHCCTTCEEEECCCCS
T ss_pred ---------cchhhhhhheecCCeEEEEEeccC
Confidence 245778889999999998866543
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=82.45 E-value=2.1 Score=41.89 Aligned_cols=91 Identities=11% Similarity=0.094 Sum_probs=55.8
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccc-cCC--CCCCceeEEEEccchhhcC
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQ-RLP--FFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~-~lp--f~d~sfDlV~~~~~L~~~~ 352 (430)
.+||-+|+|. |.++..+++. |++|++++ .++.-.+.+++-|.-.++..... .+. .. +.+|+|+..-....
T Consensus 181 ~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~--~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~-~~~D~vid~~g~~~-- 255 (360)
T 1piw_A 181 KKVGIVGLGGIGSMGTLISKAMGAETYVIS--RSSRKREDAMKMGADHYIATLEEGDWGEKYF-DTFDLIVVCASSLT-- 255 (360)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEE--SSSTTHHHHHHHTCSEEEEGGGTSCHHHHSC-SCEEEEEECCSCST--
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEc--CCHHHHHHHHHcCCCEEEcCcCchHHHHHhh-cCCCEEEECCCCCc--
Confidence 4569999754 7777777775 99998884 44555677777675333322111 110 11 47999997432200
Q ss_pred CchhHHHHHHHHHHhccCCcEEEEee
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+ ..+....++|+|||.+++..
T Consensus 256 ~-----~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 256 D-----IDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp T-----CCTTTGGGGEEEEEEEEECC
T ss_pred H-----HHHHHHHHHhcCCCEEEEec
Confidence 1 12446678999999988643
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=82.43 E-value=5.4 Score=38.41 Aligned_cols=91 Identities=10% Similarity=0.027 Sum_probs=57.6
Q ss_pred cEEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHH-hcCCeeEEEc-ccccCC-----CCCCceeEEEEccc
Q 043503 278 RIGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIA-SRGLISMHIS-VSQRLP-----FFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~-~rg~i~~~~~-d~~~lp-----f~d~sfDlV~~~~~ 347 (430)
++||-+|+ |.|..+..++.. |++|+++ +.++...+.++ +-|.-..+.. +...+. ...+.+|+|+.+-.
T Consensus 157 ~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~--~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g 234 (345)
T 2j3h_A 157 ETVYVSAASGAVGQLVGQLAKMMGCYVVGS--AGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVG 234 (345)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESSC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEE--eCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECCC
Confidence 45799996 567777777765 8999888 45566667776 4454222211 111111 11246999987422
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
. ..+....+.|+|||.+++....
T Consensus 235 ~----------~~~~~~~~~l~~~G~~v~~G~~ 257 (345)
T 2j3h_A 235 G----------KMLDAVLVNMNMHGRIAVCGMI 257 (345)
T ss_dssp H----------HHHHHHHTTEEEEEEEEECCCG
T ss_pred H----------HHHHHHHHHHhcCCEEEEEccc
Confidence 1 2577888999999999876543
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=82.40 E-value=2.5 Score=41.01 Aligned_cols=92 Identities=22% Similarity=0.196 Sum_probs=57.2
Q ss_pred cEEEEEcCC--ccHHHHHHHH-c-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccC----C-CCC-CceeEEEEccc
Q 043503 278 RIGLDIGGG--TGTFAARMRE-R-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRL----P-FFE-NTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcG--tG~~a~~La~-~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l----p-f~d-~sfDlV~~~~~ 347 (430)
++||-+|+| .|..+..++. . |++|+++ +.++...+.+++.|.-.++....... . ... +.+|+|+..-.
T Consensus 172 ~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g 249 (347)
T 1jvb_A 172 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGV--DVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN 249 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEE--ESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred CEEEEECCCccHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEEECCC
Confidence 457999987 5566666654 4 8999888 45566667776666532322111111 0 112 47999997422
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
- ...+....++|+|||.+++....
T Consensus 250 ~---------~~~~~~~~~~l~~~G~iv~~g~~ 273 (347)
T 1jvb_A 250 S---------EKTLSVYPKALAKQGKYVMVGLF 273 (347)
T ss_dssp C---------HHHHTTGGGGEEEEEEEEECCSS
T ss_pred C---------HHHHHHHHHHHhcCCEEEEECCC
Confidence 1 23567888999999999876543
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=82.02 E-value=3.7 Score=40.06 Aligned_cols=91 Identities=12% Similarity=-0.025 Sum_probs=56.1
Q ss_pred cEEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccC----C--CCCCceeEEEEccch
Q 043503 278 RIGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRL----P--FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l----p--f~d~sfDlV~~~~~L 348 (430)
.+||-.|+ |.|..++.++.. |++|+++ +.++...+.+++.|.-..+......+ . .....+|+|+.+-.-
T Consensus 164 ~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G~ 241 (354)
T 2j8z_A 164 DYVLIHAGLSGVGTAAIQLTRMAGAIPLVT--AGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGG 241 (354)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCG
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEE--eCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCCc
Confidence 45688883 566776666655 8999888 44566667776656422222111110 0 123469999875322
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
..+....++|++||.+++....
T Consensus 242 ----------~~~~~~~~~l~~~G~iv~~G~~ 263 (354)
T 2j8z_A 242 ----------SYWEKNVNCLALDGRWVLYGLM 263 (354)
T ss_dssp ----------GGHHHHHHHEEEEEEEEECCCT
T ss_pred ----------hHHHHHHHhccCCCEEEEEecc
Confidence 1356778899999999886543
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=81.76 E-value=6.6 Score=38.17 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=56.5
Q ss_pred EEEEcCCc-cHHHHHHHHc-CCE-EEEEecCCChhHHHHHHhcCC--eeEEEccc--cc----CC--CCCCceeEEEEcc
Q 043503 280 GLDIGGGT-GTFAARMRER-NVT-IITTSLNLDGPFNSFIASRGL--ISMHISVS--QR----LP--FFENTLDIVHSMH 346 (430)
Q Consensus 280 VLDIGcGt-G~~a~~La~~-g~~-Vv~vdiD~s~~~le~a~~rg~--i~~~~~d~--~~----lp--f~d~sfDlV~~~~ 346 (430)
||=+|+|. |.++..+++. |++ |+++ +.++.-.+.+++.+. +.+...+. +. +. .....+|+|+..-
T Consensus 183 VlV~GaG~vG~~aiqlak~~Ga~~Vi~~--~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~ 260 (363)
T 3m6i_A 183 VLICGAGPIGLITMLCAKAAGACPLVIT--DIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECT 260 (363)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCSEEEE--ESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEECS
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEEECC
Confidence 47788765 7788888876 886 8877 556766777766532 22221110 11 10 1245799999842
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
.- ...+....++|++||.+++....
T Consensus 261 g~---------~~~~~~~~~~l~~~G~iv~~G~~ 285 (363)
T 3m6i_A 261 GV---------ESSIAAAIWAVKFGGKVFVIGVG 285 (363)
T ss_dssp CC---------HHHHHHHHHHSCTTCEEEECCCC
T ss_pred CC---------hHHHHHHHHHhcCCCEEEEEccC
Confidence 21 23577888999999999886543
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=81.51 E-value=7 Score=40.45 Aligned_cols=122 Identities=13% Similarity=0.097 Sum_probs=68.0
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcC----CeeEEEcccccCCCC-----------------CC
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRG----LISMHISVSQRLPFF-----------------EN 337 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg----~i~~~~~d~~~lpf~-----------------d~ 337 (430)
+++|+-||.|.+...+.+.|.+++.. +|+++...+.-+.+- ...++.+|...+... -.
T Consensus 90 ~viDLFaG~GGlslG~~~aG~~~v~a-vE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~~~~ 168 (482)
T 3me5_A 90 RFIDLFAGIGGIRRGFESIGGQCVFT-SEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQHIP 168 (482)
T ss_dssp EEEEESCTTSHHHHHHHTTTEEEEEE-ECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHHHHSC
T ss_pred eEEEecCCccHHHHHHHHCCCEEEEE-EeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhhhcCC
Confidence 56999999999999998888875432 366665555444442 234566776554311 13
Q ss_pred ceeEEEEccchhhcC-----------------Cc--hhHHHHHHHHHHhccCCcEEEEee---ccc-cCcCcHHHHHHHH
Q 043503 338 TLDIVHSMHVLSNWI-----------------PD--SMLEFTLYDIYRLLRPGGIFWLDR---FFC-FGSQLNETYVPML 394 (430)
Q Consensus 338 sfDlV~~~~~L~~~~-----------------~d--~~l~~~L~ei~RvLrPGG~lvl~~---f~~-~~~~~~~~~~~ll 394 (430)
.+|+|+....--.+. .+ ..+-.-+.++.+.++|. +|++.. +.. ......+.+...+
T Consensus 169 ~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk-~fvlENV~gl~s~~~g~~f~~i~~~L 247 (482)
T 3me5_A 169 EHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRPA-MFVLENVKNLKSHDKGKTFRIIMQTL 247 (482)
T ss_dssp CCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHHCCS-EEEEEEETTTTTGGGGHHHHHHHHHH
T ss_pred CCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHcCCc-EEEEeCcHHHhcccCCcHHHHHHHHH
Confidence 589998742210111 01 11222333344556785 333322 111 1122456788889
Q ss_pred HHcCCEEE
Q 043503 395 DRIGFKKL 402 (430)
Q Consensus 395 ~~~Gfk~l 402 (430)
+..||.+.
T Consensus 248 ~~lGY~v~ 255 (482)
T 3me5_A 248 DELGYDVA 255 (482)
T ss_dssp HHTTEEET
T ss_pred hcCCcEEE
Confidence 99999863
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=80.21 E-value=18 Score=29.70 Aligned_cols=107 Identities=8% Similarity=0.065 Sum_probs=59.5
Q ss_pred EEEEEcCCc-c-HHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC----CCCCceeEEEEccchhhcC
Q 043503 279 IGLDIGGGT-G-TFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP----FFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 279 ~VLDIGcGt-G-~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp----f~d~sfDlV~~~~~L~~~~ 352 (430)
+++=+|+|. | .++..|.+.|.+|+.+| .++...+.+.+.+ +.++.+|..... ..-..+|+|+..-.
T Consensus 8 ~v~I~G~G~iG~~la~~L~~~g~~V~~id--~~~~~~~~~~~~~-~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~----- 79 (141)
T 3llv_A 8 EYIVIGSEAAGVGLVRELTAAGKKVLAVD--KSKEKIELLEDEG-FDAVIADPTDESFYRSLDLEGVSAVLITGS----- 79 (141)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEE--SCHHHHHHHHHTT-CEEEECCTTCHHHHHHSCCTTCSEEEECCS-----
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEE--CCHHHHHHHHHCC-CcEEECCCCCHHHHHhCCcccCCEEEEecC-----
Confidence 347788854 2 24444455599999884 4566666666655 466677654421 12346898887422
Q ss_pred CchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEE
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
+......+....+-+. .+.++..- .. ....+.+.+.|...+
T Consensus 80 -~~~~n~~~~~~a~~~~-~~~iia~~---~~----~~~~~~l~~~G~~~v 120 (141)
T 3llv_A 80 -DDEFNLKILKALRSVS-DVYAIVRV---SS----PKKKEEFEEAGANLV 120 (141)
T ss_dssp -CHHHHHHHHHHHHHHC-CCCEEEEE---SC----GGGHHHHHHTTCSEE
T ss_pred -CHHHHHHHHHHHHHhC-CceEEEEE---cC----hhHHHHHHHcCCCEE
Confidence 2223445555666666 55554421 11 223456778886533
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 430 | ||||
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 2e-07 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 6e-07 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 4e-06 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 5e-06 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 2e-05 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 1e-04 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 2e-04 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 3e-04 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 5e-04 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 0.001 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 0.001 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 0.002 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 0.002 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 0.003 |
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 49.7 bits (117), Expect = 2e-07
Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 3/154 (1%)
Query: 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLI 322
++++ +R LD+ GTG + ER V + + R L
Sbjct: 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLK 89
Query: 323 SMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF 382
+ F+N D V + + L + L+PGG+F D F C+
Sbjct: 90 IEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD-FPCW 148
Query: 383 GSQLNETYVPMLDRIGFKKLRWNVGMKLDRGVKK 416
+ V ++ G +KL +++ V+K
Sbjct: 149 FYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQK 182
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.4 bits (114), Expect = 6e-07
Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 17/123 (13%)
Query: 271 MKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLD------------GPFNSFIAS 318
++ G R+ LD+ GTG + + E ++ + + +F
Sbjct: 52 LRQHGCHRV-LDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKW 110
Query: 319 RGLISMHISVSQRLPFFENTLDIVHS----MHVLSNWIPDSMLEFTLYDIYRLLRPGGIF 374
+ +++ + +P + ++ H+ + S L +I ++RPGG+
Sbjct: 111 VIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLL 170
Query: 375 WLD 377
+D
Sbjct: 171 VID 173
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 45.3 bits (106), Expect = 4e-06
Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 4/103 (3%)
Query: 281 LDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRL---PFFEN 337
LD+G G G + + + N N ++ F+
Sbjct: 35 LDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDG 94
Query: 338 TLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380
D + S V+ ++ + + ++ R +PGG +
Sbjct: 95 EYDFILSTVVM-MFLEAQTIPGLIANMQRCTKPGGYNLIVAAM 136
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 45.6 bits (107), Expect = 5e-06
Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 12/131 (9%)
Query: 250 EKSRWL-IDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-----NVTIIT 303
+ +R L ++ + + ++ V K + I +D G G G + T I
Sbjct: 3 KNTRDLYYNDDYVSFLVNTVW--KITKPVHI-VDYGCGYGYLGLVLMPLLPEGSKYTGID 59
Query: 304 TSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYD 363
+ L S + + DI L + + E L
Sbjct: 60 SGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHM---TTPETMLQK 116
Query: 364 IYRLLRPGGIF 374
+ ++ GG
Sbjct: 117 MIHSVKKGGKI 127
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 43.5 bits (101), Expect = 2e-05
Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 4/116 (3%)
Query: 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGP--FNSFIASRGLI 322
I + L LD+ GTG + + L+ + + S+GL
Sbjct: 27 IIEKCVENNLVFDDY-LDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLK 85
Query: 323 SMHISVSQRLPFFENTLDIVHSM-HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377
D++ + I L+ + L+ GG+F D
Sbjct: 86 PRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 31/165 (18%), Positives = 49/165 (29%), Gaps = 28/165 (16%)
Query: 281 LDIGGGTGTFAARMRERN---VTIITTS--------LNLDGPFNSFIASRGLISMHISVS 329
L++G G A++++E II + + I +GL
Sbjct: 58 LEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL 117
Query: 330 QRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIF-----------WLDR 378
F D + F +RLL+PGG+ +
Sbjct: 118 PDGHFDGILYDTYPLSEETWHT---HQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSK 174
Query: 379 FFCFGSQLNETYVPMLDRIGFK--KLRWNVGMKLDRGVKKNEWYF 421
+ ET VP L GF+ +R V M L + F
Sbjct: 175 YSDITIMFEETQVPALLEAGFRRENIRTEV-MALVPPADCRYYAF 218
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 39.9 bits (92), Expect = 2e-04
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 1/118 (0%)
Query: 281 LDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLD 340
LDIG G G A I + + ++ ++ Q D
Sbjct: 21 LDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 80
Query: 341 IVHSMHVLSNWIPD-SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRI 397
+ S + + ++ R+L+ G F L + + + +V L+R+
Sbjct: 81 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRL 138
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 39.6 bits (91), Expect = 3e-04
Identities = 21/117 (17%), Positives = 32/117 (27%), Gaps = 11/117 (9%)
Query: 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPF--NSFIASR 319
+ +VL MKP I LD+G G+G T I S +
Sbjct: 25 LGRVLRMKPGTRI---LDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV 81
Query: 320 GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376
I D+ + + + L+PGGI +
Sbjct: 82 SERVHFIHNDAAGYVANEKCDVAACVGAT-WIAGG--FAGAEELLAQSLKPGGIMLI 135
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 39.2 bits (90), Expect = 5e-04
Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 12/116 (10%)
Query: 262 DYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIA-SRG 320
D + Q+ + LDIG G G + + I T L++ A
Sbjct: 71 DAIVAQLRERLDDKATAV-LDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP 129
Query: 321 LISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376
++ ++ S RLPF + ++D + ++ ++ R+++PGG
Sbjct: 130 QVTFCVASSHRLPFSDTSMDAIIRIYAPCK----------AEELARVVKPGGWVIT 175
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 38.1 bits (87), Expect = 0.001
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 3/98 (3%)
Query: 281 LDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENT 338
LD+ G G A V + ++ +FI G +
Sbjct: 20 LDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 79
Query: 339 LDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376
++ + F + + YR+L+ GG L
Sbjct: 80 ERFHIVTCRIAAHHFPNPASF-VSEAYRVLKKGGQLLL 116
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (88), Expect = 0.001
Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 6/149 (4%)
Query: 281 LDIGGGTGT---FAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISV--SQRLPFF 335
LD+G GTG FAA+ + V + S L + ++ ++ + + +
Sbjct: 40 LDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLP 99
Query: 336 ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLD 395
+D++ S + + +SML+ LY + L GG + D D
Sbjct: 100 VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISL-VAVSDVNKHAD 158
Query: 396 RIGFKKLRWNVGMKLDRGVKKNEWYFSAV 424
RI F + M + E +
Sbjct: 159 RIAFWDDVYGFKMSCMKKAVIPEAVVEVL 187
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.5 bits (86), Expect = 0.002
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 266 DQVLSMKPLGTIRIGLDIGGGTGT---FAARMRERNVTIITTSLNLDGPFNSFIASRGLI 322
+ + + L ++ LD+G GTG FAA+ R V I S D A++
Sbjct: 23 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDH 82
Query: 323 SMHISV--SQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378
+ I + + +DI+ S + +SML L+ + L P G+ + DR
Sbjct: 83 VVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDR 140
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.002
Identities = 24/138 (17%), Positives = 41/138 (29%), Gaps = 27/138 (19%)
Query: 260 KLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER----------NVTII------- 302
KL I ++ K I+I L IGGG G ++ + N ++
Sbjct: 27 KLPGIIGRIGDTKS--EIKI-LSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI 83
Query: 303 ----TTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLE 358
+ N A S D +H + +L ++ D +
Sbjct: 84 AKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLY-YVKD--IP 140
Query: 359 FTLYDIYRLLRPGGIFWL 376
TL + LL +
Sbjct: 141 ATLKFFHSLLGTNAKMLI 158
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 36.4 bits (83), Expect = 0.003
Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 281 LDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENT 338
L++G G F +R++E ++T + S + +LP +
Sbjct: 25 LELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDN 84
Query: 339 LDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376
+ + H + + + P ++L+ L GG +L
Sbjct: 85 IVLTHVLEHIDD--PVALLKRIN---DDWLAEGGRLFL 117
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.79 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.76 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.73 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.7 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.7 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.69 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.69 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.67 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.67 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.65 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.62 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.62 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.59 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.58 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.58 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.56 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.56 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.54 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.53 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.52 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.52 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.51 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.49 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.49 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.47 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.45 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.43 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.42 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.41 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.39 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.34 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.33 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.31 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.29 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.26 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.22 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.22 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.22 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.21 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.2 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.15 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.14 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.12 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.11 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.11 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.09 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.07 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.07 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.07 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.06 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.04 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.93 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.85 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.81 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.76 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.74 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.72 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.71 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.65 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.62 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.53 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.53 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.5 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.49 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.47 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.46 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.45 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.41 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.41 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.32 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.22 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.11 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.06 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.05 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.94 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.92 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.89 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.87 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.87 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.81 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.77 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.7 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.56 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.51 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.43 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.4 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.34 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.34 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.33 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.31 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.3 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.24 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.06 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.03 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.77 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.7 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.45 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.35 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.57 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.54 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.39 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.34 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.25 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.82 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 94.74 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.65 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.77 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 93.74 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.67 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 92.51 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.4 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.37 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 92.05 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 91.65 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 91.5 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 91.39 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 90.88 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 90.8 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.76 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 90.65 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 90.51 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 90.25 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 89.83 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 89.82 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 89.52 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 89.5 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 88.48 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 86.59 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 85.95 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 85.53 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 85.5 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 85.35 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 84.82 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 84.02 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 82.52 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 82.04 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 81.65 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 80.67 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 80.17 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.79 E-value=4.7e-19 Score=163.55 Aligned_cols=134 Identities=17% Similarity=0.272 Sum_probs=105.0
Q ss_pred HHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCcee
Q 043503 267 QVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLD 340 (430)
Q Consensus 267 ~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfD 340 (430)
++++..+-....+|||||||+|.++..+++++.+|+++ |+++.|++.|+++ + .+.++++|++.+|+++++||
T Consensus 6 ~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gv--D~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD 83 (231)
T d1vl5a_ 6 KLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAF--DLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFH 83 (231)
T ss_dssp HHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEE--ESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEE
T ss_pred HHHHhcCCCCcCEEEEecccCcHHHHHHHHhCCEEEEE--ECCHHHHhhhhhcccccccccccccccccccccccccccc
Confidence 44443333333456999999999999999999999988 7788998887654 3 38899999999999999999
Q ss_pred EEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC---------------------cHHHHHHHHHHcCC
Q 043503 341 IVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ---------------------LNETYVPMLDRIGF 399 (430)
Q Consensus 341 lV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~---------------------~~~~~~~ll~~~Gf 399 (430)
+|+|..+++ |+++ ...++.++.|+|||||++++.++...... ..+++..+++++||
T Consensus 84 ~v~~~~~l~-~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 160 (231)
T d1vl5a_ 84 IVTCRIAAH-HFPN--PASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGF 160 (231)
T ss_dssp EEEEESCGG-GCSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTC
T ss_pred ccccccccc-ccCC--HHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCC
Confidence 999999995 4776 78999999999999999998765432211 12457889999999
Q ss_pred EEEEEE
Q 043503 400 KKLRWN 405 (430)
Q Consensus 400 k~l~~~ 405 (430)
+.++..
T Consensus 161 ~~~~~~ 166 (231)
T d1vl5a_ 161 ELEELH 166 (231)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 987644
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.76 E-value=3.8e-18 Score=158.79 Aligned_cols=130 Identities=17% Similarity=0.236 Sum_probs=105.0
Q ss_pred HHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeE
Q 043503 268 VLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDI 341 (430)
Q Consensus 268 lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDl 341 (430)
.+...|+.+ |||||||+|.++..+++++.+|+|+ |+|+.|++.|+++ + .+.++++|++.+|+++++||+
T Consensus 11 ~~~~~~~~r---ILDiGcGtG~~~~~la~~~~~v~gv--D~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 85 (234)
T d1xxla_ 11 TAECRAEHR---VLDIGAGAGHTALAFSPYVQECIGV--DATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDI 85 (234)
T ss_dssp HHTCCTTCE---EEEESCTTSHHHHHHGGGSSEEEEE--ESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEE
T ss_pred HhCCCCCCE---EEEeCCcCcHHHHHHHHhCCeEEEE--eCChhhhhhhhhhhcccccccccccccccccccccccccce
Confidence 334455544 5999999999999999999999988 7789998887654 3 389999999999999999999
Q ss_pred EEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC---------------------cHHHHHHHHHHcCCE
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ---------------------LNETYVPMLDRIGFK 400 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~---------------------~~~~~~~ll~~~Gfk 400 (430)
|+|..+++ |+++ ...+++++.|+|||||++++.++...... ....+..++++.||.
T Consensus 86 v~~~~~l~-~~~d--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~ 162 (234)
T d1xxla_ 86 ITCRYAAH-HFSD--VRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLA 162 (234)
T ss_dssp EEEESCGG-GCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEE
T ss_pred eeeeceee-cccC--HHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCc
Confidence 99999995 5776 78999999999999999998766543221 123577889999998
Q ss_pred EEEEE
Q 043503 401 KLRWN 405 (430)
Q Consensus 401 ~l~~~ 405 (430)
+....
T Consensus 163 ~~~~~ 167 (234)
T d1xxla_ 163 YQDIQ 167 (234)
T ss_dssp EEEEE
T ss_pred eeEEE
Confidence 66543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.73 E-value=2.9e-17 Score=157.18 Aligned_cols=136 Identities=21% Similarity=0.229 Sum_probs=107.9
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d 336 (430)
+..+....+..+..+|||||||+|.++..|+++ +.+|+++ |+++.|++.|+++ | .+.++++|+..+|+++
T Consensus 56 ~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gv--D~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~ 133 (282)
T d2o57a1 56 ASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCL--NIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED 133 (282)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEE--ESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEE--eccchhhhhhhcccccccccccccccccccccccccc
Confidence 344433333333456799999999999999987 8999988 7788888877765 3 4899999999999999
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC------------------cHHHHHHHHHHcC
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ------------------LNETYVPMLDRIG 398 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~------------------~~~~~~~ll~~~G 398 (430)
++||+|++..++.| +++ ...++.++.|+|||||+|++.++...... ....+..+++++|
T Consensus 134 ~sfD~V~~~~~l~h-~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~G 210 (282)
T d2o57a1 134 NSYDFIWSQDAFLH-SPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECG 210 (282)
T ss_dssp TCEEEEEEESCGGG-CSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTT
T ss_pred cccchhhccchhhh-ccC--HHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcC
Confidence 99999999999966 566 78899999999999999999876543211 1345788999999
Q ss_pred CEEEEEE
Q 043503 399 FKKLRWN 405 (430)
Q Consensus 399 fk~l~~~ 405 (430)
|..+...
T Consensus 211 f~~i~~~ 217 (282)
T d2o57a1 211 LVTLRTF 217 (282)
T ss_dssp EEEEEEE
T ss_pred CceEEEE
Confidence 9987755
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.70 E-value=6.2e-17 Score=153.64 Aligned_cols=138 Identities=12% Similarity=0.136 Sum_probs=111.8
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCCCcee
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFENTLD 340 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d~sfD 340 (430)
..++..++.....+|||+|||+|.++..++.+ ...|+++ |+++.|++.|+++ ..+.+++++++.+++++++||
T Consensus 83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~v--D~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T d1xtpa_ 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLL--EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEE--ESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEE--cCCHHHHHhhhccccccccceeEEccccccccCCCccc
Confidence 45566666666677899999999999998876 5678888 7789999999876 337899999999999999999
Q ss_pred EEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC------------cHHHHHHHHHHcCCEEEEEEe
Q 043503 341 IVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ------------LNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 341 lV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~------------~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
+|++..+++| +++..+..+|.++.++|+|||+|++.+....... ..+.|.++++++||++++...
T Consensus 161 ~I~~~~vl~h-l~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 161 LIVIQWTAIY-LTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp EEEEESCGGG-SCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred eEEeeccccc-cchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence 9999999966 6665677899999999999999999776543321 235799999999999987553
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=7.9e-17 Score=148.88 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=105.9
Q ss_pred CccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccch
Q 043503 276 TIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
...+|||||||+|.++..++++ +.+|+++ |+++.|++.|+++ + .+.++++|++.+++++++||+|++..++
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~v--D~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFREVDMV--DITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 137 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEE--ESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCCEEEEe--ecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 3456799999999999998766 5688888 7889999998876 2 2689999999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC-----------cHHHHHHHHHHcCCEEEEEEe
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-----------LNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-----------~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
+| +++.....++.++.++|||||.+++.+....... ..+.+.++++++||++++...
T Consensus 138 ~h-~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~ 205 (222)
T d2ex4a1 138 GH-LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER 205 (222)
T ss_dssp GG-SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred cc-chhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence 66 6665577899999999999999999876644321 246789999999999988653
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.69 E-value=1.9e-17 Score=157.83 Aligned_cols=183 Identities=14% Similarity=0.114 Sum_probs=125.3
Q ss_pred CCCCcHHHHHHHHHcCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccchhhhhhhccCCCCccCCcc
Q 043503 164 ECPVDDVFAQRLMLKGCEPLPRRRCKPKSPVNYVEPTAVPDSLWEKPAETSIIWDPYSCKSYQCLIDRKKAPGFFDCKDC 243 (430)
Q Consensus 164 ~cp~d~~~~~~l~~~~c~plprrrC~~~~p~~y~~P~pwP~s~w~~p~d~~~~W~~y~c~~~~~l~~~k~~~g~~~C~~c 243 (430)
+-..||+ +.|.++++|....++++.+|-+.. +. ..+....+..+++|.
T Consensus 54 i~~~dW~---~~w~~~~~p~~~~~~~v~~~~~~~-----~~------------------~~~~i~i~pg~aFGT------ 101 (254)
T d2nxca1 54 VGDEDWL---EAWRRDLKPALAPPFVVLAPWHTW-----EG------------------AEIPLVIEPGMAFGT------ 101 (254)
T ss_dssp CCHHHHH---HHHHHHCCCEEETTEEEECTTCCC-----CS------------------SSEEEECCCC-----------
T ss_pred cCcchHH---HHHHhhCCCEEECCEEEEeccccC-----CC------------------cceEEEEccccccCc------
Confidence 3445898 999999999987788888764311 11 112334566777776
Q ss_pred cccccccccceeecCCchhHHHHHHHcc-CCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc---
Q 043503 244 FDLQGREKSRWLIDNGKLDYGIDQVLSM-KPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR--- 319 (430)
Q Consensus 244 Fd~~~~e~~~~~~~~~~~~~~id~lL~~-~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r--- 319 (430)
|.+.++ ...++.+... .++ .+|||+|||+|.+++.+++.|.+|+++ |+++.+++.|+++
T Consensus 102 ----G~H~TT--------~l~l~~l~~~~~~g---~~VLDiGcGsG~l~i~aa~~g~~V~gv--Dis~~av~~A~~na~~ 164 (254)
T d2nxca1 102 ----GHHETT--------RLALKALARHLRPG---DKVLDLGTGSGVLAIAAEKLGGKALGV--DIDPMVLPQAEANAKR 164 (254)
T ss_dssp ----CCSHHH--------HHHHHHHHHHCCTT---CEEEEETCTTSHHHHHHHHTTCEEEEE--ESCGGGHHHHHHHHHH
T ss_pred ----cccchh--------hHHHHHHHhhcCcc---CEEEEcccchhHHHHHHHhcCCEEEEE--ECChHHHHHHHHHHHH
Confidence 444332 2223333332 333 356999999999999999999999988 5567777766643
Q ss_pred -CC-eeEEEcccccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHc
Q 043503 320 -GL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRI 397 (430)
Q Consensus 320 -g~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~ 397 (430)
|. +.+..++... .+++++||+|+++... + .+..++.++.|+|||||++++++++. ...+.+.+.+++.
T Consensus 165 n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~-~-----~l~~l~~~~~~~LkpGG~lilSgil~---~~~~~v~~~~~~~ 234 (254)
T d2nxca1 165 NGVRPRFLEGSLEA-ALPFGPFDLLVANLYA-E-----LHAALAPRYREALVPGGRALLTGILK---DRAPLVREAMAGA 234 (254)
T ss_dssp TTCCCEEEESCHHH-HGGGCCEEEEEEECCH-H-----HHHHHHHHHHHHEEEEEEEEEEEEEG---GGHHHHHHHHHHT
T ss_pred cCCceeEEeccccc-cccccccchhhhcccc-c-----cHHHHHHHHHHhcCCCcEEEEEecch---hhHHHHHHHHHHC
Confidence 54 6777887654 3457899999996444 2 26678999999999999999998773 2346788889999
Q ss_pred CCEEEEEE
Q 043503 398 GFKKLRWN 405 (430)
Q Consensus 398 Gfk~l~~~ 405 (430)
||+.++..
T Consensus 235 Gf~~~~~~ 242 (254)
T d2nxca1 235 GFRPLEEA 242 (254)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEE
Confidence 99987643
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=4.2e-17 Score=150.78 Aligned_cols=96 Identities=20% Similarity=0.398 Sum_probs=85.8
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHH
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLE 358 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~ 358 (430)
+|||+|||+|.++..+++.|.+|+|+ |+++.|++.|++++...++.++++.+|+++++||+|+|.....+|+++ ..
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~~v~gi--D~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d--~~ 120 (246)
T d2avna1 45 RVLDLGGGTGKWSLFLQERGFEVVLV--DPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN--KD 120 (246)
T ss_dssp EEEEETCTTCHHHHHHHTTTCEEEEE--ESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC--HH
T ss_pred EEEEECCCCchhcccccccceEEEEe--ecccccccccccccccccccccccccccccccccceeeecchhhhhhh--HH
Confidence 46999999999999999999999998 778999999999988778899999999999999999997544356777 77
Q ss_pred HHHHHHHHhccCCcEEEEee
Q 043503 359 FTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 359 ~~L~ei~RvLrPGG~lvl~~ 378 (430)
.+|+++.|+|||||.++++.
T Consensus 121 ~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 121 KAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHhhcCcCcEEEEEE
Confidence 89999999999999999864
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.67 E-value=1e-16 Score=146.20 Aligned_cols=97 Identities=16% Similarity=0.291 Sum_probs=84.9
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCCCceeEEEEccchhhcCC
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~ 353 (430)
+|||||||+|.++..+++.+.+|+|+ |+|+.|++.|+++ +. +.++.+|+..+++++++||+|+|..+++| ++
T Consensus 40 ~ILDiGcG~G~~~~~la~~~~~v~gi--D~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~-~~ 116 (226)
T d1ve3a1 40 KVLDLACGVGGFSFLLEDYGFEVVGV--DISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH-FE 116 (226)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG-CC
T ss_pred EEEEECCCcchhhhhHhhhhcccccc--cccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhh-CC
Confidence 46999999999999999999999998 7789999888765 32 77888999999999999999999999955 56
Q ss_pred chhHHHHHHHHHHhccCCcEEEEee
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+.++..+|.++.|+|||||.+++..
T Consensus 117 ~~d~~~~l~~i~~~LkpgG~lii~~ 141 (226)
T d1ve3a1 117 PLELNQVFKEVRRVLKPSGKFIMYF 141 (226)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHcCcCcEEEEEE
Confidence 5458889999999999999998864
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=2e-16 Score=148.13 Aligned_cols=134 Identities=17% Similarity=0.237 Sum_probs=104.6
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLPFFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lpf~d 336 (430)
+.+.+...|+. +|||||||+|.++..++++ +++|+|+ |+++.|++.++++ |+ +.++++|++.+ +++
T Consensus 25 l~~~~~l~pg~---~VLDiGCG~G~~~~~la~~~~~~v~Gv--D~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~ 98 (245)
T d1nkva_ 25 LGRVLRMKPGT---RILDLGSGSGEMLCTWARDHGITGTGI--DMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VAN 98 (245)
T ss_dssp HHHHTCCCTTC---EEEEETCTTCHHHHHHHHHTCCEEEEE--ESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCS
T ss_pred HHHHcCCCCCC---EEEEEcCCCCHHHHHHHHhcCCEEEEE--ecccchhhHHHHHHHHhhccccchhhhhHHhhc-ccc
Confidence 33444455544 4599999999999999887 8899988 7789998877665 43 89999999987 478
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC------------------cHHHHHHHHHHcC
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ------------------LNETYVPMLDRIG 398 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~------------------~~~~~~~ll~~~G 398 (430)
++||+|+|..++.| .++ ...++.++.|+|||||++++......... ....+...+++.|
T Consensus 99 ~~fD~v~~~~~~~~-~~d--~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG 175 (245)
T d1nkva_ 99 EKCDVAACVGATWI-AGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLG 175 (245)
T ss_dssp SCEEEEEEESCGGG-TSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTT
T ss_pred CceeEEEEEehhhc-cCC--HHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcC
Confidence 99999999999965 555 67899999999999999999765432211 2345888999999
Q ss_pred CEEEEEEec
Q 043503 399 FKKLRWNVG 407 (430)
Q Consensus 399 fk~l~~~~~ 407 (430)
|..+.....
T Consensus 176 ~~~v~~~~~ 184 (245)
T d1nkva_ 176 YDVVEMVLA 184 (245)
T ss_dssp BCCCEEEEC
T ss_pred CEEEEEEeC
Confidence 987765433
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=8.2e-16 Score=139.76 Aligned_cols=124 Identities=22% Similarity=0.392 Sum_probs=99.7
Q ss_pred HccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccch
Q 043503 269 LSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 269 L~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
....+.++ |||||||+|.++..+++ ++|+ |+++.|++.+++++ +.++++|++.+++++++||+|+|..++
T Consensus 32 ~~~~~~~~---vLDiGcG~G~~~~~~~~----~~gi--D~s~~~~~~a~~~~-~~~~~~d~~~l~~~~~~fD~I~~~~~l 101 (208)
T d1vlma_ 32 KCLLPEGR---GVEIGVGTGRFAVPLKI----KIGV--EPSERMAEIARKRG-VFVLKGTAENLPLKDESFDFALMVTTI 101 (208)
T ss_dssp HHHCCSSC---EEEETCTTSTTHHHHTC----CEEE--ESCHHHHHHHHHTT-CEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred HhhCCCCe---EEEECCCCcccccccce----EEEE--eCChhhcccccccc-ccccccccccccccccccccccccccc
Confidence 33455544 59999999999988853 4666 78899999999876 589999999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc----------------C----cHHHHHHHHHHcCCEEEEEE
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS----------------Q----LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~----------------~----~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+| +++ +..++.++.|+|+|||++++..+-.... . ..+++..+++++||+.++..
T Consensus 102 ~h-~~d--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~ 175 (208)
T d1vlma_ 102 CF-VDD--PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 175 (208)
T ss_dssp GG-SSC--HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred cc-ccc--cccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence 66 666 7899999999999999999875432110 0 23568999999999988755
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.62 E-value=2.4e-15 Score=139.22 Aligned_cols=135 Identities=21% Similarity=0.176 Sum_probs=106.5
Q ss_pred hHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcC--CeeEEEcccccCCCCCCce
Q 043503 262 DYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRG--LISMHISVSQRLPFFENTL 339 (430)
Q Consensus 262 ~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg--~i~~~~~d~~~lpf~d~sf 339 (430)
.+.+..+.....++++ ||||||+|.++..++++|.+|+++ |+++.+++.|+++. .+.++.++++.+++ +++|
T Consensus 9 ~~~~~~~~~~~~~~~V---LDiGcG~G~~~~~l~~~g~~v~gi--D~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~f 82 (225)
T d2p7ia1 9 PFMVRAFTPFFRPGNL---LELGSFKGDFTSRLQEHFNDITCV--EASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRY 82 (225)
T ss_dssp HHHHHHHGGGCCSSCE---EEESCTTSHHHHHHTTTCSCEEEE--ESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCE
T ss_pred HHHHHHhhhhCCCCcE---EEEeCCCcHHHHHHHHcCCeEEEE--eCcHHHhhhhhccccccccccccccccccc-cccc
Confidence 4556666666665554 999999999999999999999998 77899999998763 38889999888875 6899
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHH-HhccCCcEEEEeeccc---------------cCc--------------CcHHH
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIY-RLLRPGGIFWLDRFFC---------------FGS--------------QLNET 389 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~-RvLrPGG~lvl~~f~~---------------~~~--------------~~~~~ 389 (430)
|+|+|..+++| +++ ...+|.++. |+|+|||.+++...-. ... -..+.
T Consensus 83 D~I~~~~vleh-~~d--~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 159 (225)
T d2p7ia1 83 DNIVLTHVLEH-IDD--PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDT 159 (225)
T ss_dssp EEEEEESCGGG-CSS--HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHH
T ss_pred ccccccceeEe-cCC--HHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHH
Confidence 99999999965 666 778899997 8999999999863210 000 02356
Q ss_pred HHHHHHHcCCEEEEEE
Q 043503 390 YVPMLDRIGFKKLRWN 405 (430)
Q Consensus 390 ~~~ll~~~Gfk~l~~~ 405 (430)
+..++.++||+++...
T Consensus 160 l~~~l~~~Gf~i~~~~ 175 (225)
T d2p7ia1 160 LERDASRAGLQVTYRS 175 (225)
T ss_dssp HHHHHHHTTCEEEEEE
T ss_pred HHHHHHHCCCEEEEEE
Confidence 8899999999988744
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.62 E-value=1.4e-15 Score=141.50 Aligned_cols=110 Identities=19% Similarity=0.313 Sum_probs=88.4
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C-CeeEEEcccccCCCCCCce
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G-LISMHISVSQRLPFFENTL 339 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g-~i~~~~~d~~~lpf~d~sf 339 (430)
+..++........++|||||||+|.++..++++|.+|+|+ |+|+.|++.|+++ + .+.++++|++.++++ ++|
T Consensus 30 ~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gv--D~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~f 106 (251)
T d1wzna1 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGL--DLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEF 106 (251)
T ss_dssp HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCE
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCCccchhhcccceEEEEE--eeccccccccccccccccccchheehhhhhcccc-ccc
Confidence 3444444444455677999999999999999999999988 7789999888765 3 389999999999976 589
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
|+|+|.....++.+......+|.+++++|||||+|+++
T Consensus 107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred chHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99999754434555445789999999999999999874
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.59 E-value=8.6e-15 Score=135.09 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=78.7
Q ss_pred EEEEEcCCccHHHHHHHHc----CCEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCCCCCCceeEEEEccc
Q 043503 279 IGLDIGGGTGTFAARMRER----NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLPFFENTLDIVHSMHV 347 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~----g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lpf~d~sfDlV~~~~~ 347 (430)
+|||+|||+|..+..+++. +.+|+|+ |+|+.|++.|+++ +. +.+..+|...++ ...+|+|+|+.+
T Consensus 42 ~vLDlGCGtG~~~~~l~~~~~~~~~~v~gi--D~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~~~~~ 117 (225)
T d1im8a_ 42 NVYDLGCSRGAATLSARRNINQPNVKIIGI--DNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVILNFT 117 (225)
T ss_dssp EEEEESCTTCHHHHHHHHTCCCSSCEEEEE--CSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEEEESC
T ss_pred EEEEeccchhhHHHHHHHhhcCCCCceEEe--CCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeEEeee
Confidence 4699999999999999874 7899998 8899999999865 22 455556665544 567999999999
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
+ |+.+.++...+|++++|+|+|||.|++.++.
T Consensus 118 l-~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 118 L-QFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp G-GGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred c-cccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence 8 4566556889999999999999999998655
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.58 E-value=5.2e-15 Score=134.10 Aligned_cols=98 Identities=16% Similarity=0.241 Sum_probs=83.5
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCceeEEEEccchhhcC
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
+|||||||+|..+..++++|.+|+++ |+++.|++.++++ +. +.+...|+..+++ +++||+|+|..+++| +
T Consensus 33 rvLDiGcG~G~~~~~la~~g~~v~gv--D~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~-~ 108 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANGYDVTAW--DKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMF-L 108 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGG-S
T ss_pred cEEEECCCCCHHHHHHHHHhhhhccc--cCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeec-C
Confidence 45999999999999999999999998 7788888876543 43 7888899888775 789999999999955 6
Q ss_pred CchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
++.....++.++.++|+|||++++..+.
T Consensus 109 ~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 109 EAQTIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp CTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 6656889999999999999999987655
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.58 E-value=2.6e-15 Score=133.35 Aligned_cols=125 Identities=8% Similarity=-0.102 Sum_probs=93.5
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcC------------------CeeEEEcccccCC-CCCCc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRG------------------LISMHISVSQRLP-FFENT 338 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg------------------~i~~~~~d~~~lp-f~d~s 338 (430)
.+|||+|||+|..+.+|+++|++|+|+ |+|+.|++.|+++. .+.++.+|...++ ....+
T Consensus 22 ~rvLd~GCG~G~~a~~la~~G~~V~gv--D~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 99 (201)
T d1pjza_ 22 ARVLVPLCGKSQDMSWLSGQGYHVVGA--ELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGH 99 (201)
T ss_dssp CEEEETTTCCSHHHHHHHHHCCEEEEE--EECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHS
T ss_pred CEEEEecCcCCHHHHHHHHcCCceEee--cccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccccc
Confidence 456999999999999999999999998 77899999998751 1467777777766 34578
Q ss_pred eeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC--------cHHHHHHHHHHcCCEEEEEEe
Q 043503 339 LDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ--------LNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 339 fDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~--------~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
||+|++..++.+ ++++....+++++.++|||||++++..+...... ..+++..++ ..+|.+.....
T Consensus 100 ~D~i~~~~~l~~-l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~-~~~~~i~~~~~ 173 (201)
T d1pjza_ 100 CAAFYDRAAMIA-LPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVM-SGNWEVTKVGG 173 (201)
T ss_dssp EEEEEEESCGGG-SCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTS-CSSEEEEEEEE
T ss_pred eeEEEEEeeeEe-cchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHh-CCCcEEEEEEE
Confidence 999999988854 6665688999999999999999887665532221 123454444 35677655443
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.56 E-value=1.3e-14 Score=136.82 Aligned_cols=136 Identities=22% Similarity=0.258 Sum_probs=101.4
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFF 335 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~ 335 (430)
.+.++...+....++|||||||+|.++..++++ +.+++++ |. +++++.++++ + .+.++.+|+.. +.
T Consensus 69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~--D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~- 143 (253)
T d1tw3a2 69 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVL--EM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PL- 143 (253)
T ss_dssp THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE--EC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-
T ss_pred HHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEc--cC-HHHHHHHHHHHHHhhcccchhhccccchh-hc-
Confidence 345555566677788899999999999999998 5677776 44 4455555433 3 38899998754 22
Q ss_pred CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC----------------------cHHHHHHH
Q 043503 336 ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ----------------------LNETYVPM 393 (430)
Q Consensus 336 d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~----------------------~~~~~~~l 393 (430)
..+||+|++.+++++| +++....+|++++|+|||||++++.++...... ..++|.++
T Consensus 144 ~~~~D~v~~~~vlh~~-~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~l 222 (253)
T d1tw3a2 144 PRKADAIILSFVLLNW-PDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGL 222 (253)
T ss_dssp SSCEEEEEEESCGGGS-CHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHH
T ss_pred ccchhheeeccccccC-CchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHH
Confidence 3579999999999775 554567899999999999999998775532211 23578889
Q ss_pred HHHcCCEEEEEEe
Q 043503 394 LDRIGFKKLRWNV 406 (430)
Q Consensus 394 l~~~Gfk~l~~~~ 406 (430)
++++||++++...
T Consensus 223 l~~AGf~~~~v~~ 235 (253)
T d1tw3a2 223 AASAGLVVEEVRQ 235 (253)
T ss_dssp HHHTTEEEEEEEE
T ss_pred HHHCCCeEEEEEE
Confidence 9999999887654
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.56 E-value=1.1e-14 Score=139.53 Aligned_cols=96 Identities=11% Similarity=0.044 Sum_probs=81.3
Q ss_pred ccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCCCceeEEEEccch
Q 043503 277 IRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
..+|||+|||+|.++..+++. +.+|+++ |+++.+++.|+++ +. +.+.++|+..++++ ++||+|+|..++
T Consensus 28 ~~~ILDiGcG~G~~~~~la~~~~~~~~v~gi--D~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~~l 104 (281)
T d2gh1a1 28 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGI--DSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFL 104 (281)
T ss_dssp CCEEEEETCTTTHHHHHHTTTSCTTCEEEEE--ECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCG
T ss_pred cCEEEEecCcCCHHHHHHHHhCCCCCEEEEE--ecchhHhhhhhccccccccccccccccccccccc-CCceEEEEehhh
Confidence 345699999999999999885 6789988 7789999888765 33 78899999998875 579999999999
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
+| +++ ...++.++.|+|||||++++.+
T Consensus 105 ~~-~~d--~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 105 LH-MTT--PETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp GG-CSS--HHHHHHHHHHTEEEEEEEEEEE
T ss_pred hc-CCC--HHHHHHHHHHHcCcCcEEEEEE
Confidence 55 666 7789999999999999998765
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.54 E-value=7.1e-15 Score=137.13 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=81.9
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C-CeeEEEcccccCCCCCCceeEEEEc-cchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G-LISMHISVSQRLPFFENTLDIVHSM-HVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g-~i~~~~~d~~~lpf~d~sfDlV~~~-~~L~~~ 351 (430)
++|||+|||+|.++..++++|.+|+|+ |+|+.|++.|+++ + .+.++++|+..+++ +++||+|+|. .++.++
T Consensus 39 ~~vLDiGCG~G~~~~~l~~~g~~v~Gv--D~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~ 115 (246)
T d1y8ca_ 39 DDYLDLACGTGNLTENLCPKFKNTWAV--DLSQEMLSEAENKFRSQGLKPRLACQDISNLNI-NRKFDLITCCLDSTNYI 115 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSSEEEEE--CSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-SCCEEEEEECTTGGGGC
T ss_pred CeEEEEeCcCCHHHHHHHHhCCccEee--ccchhhhhhccccccccCccceeeccchhhhcc-cccccccceeeeeeecc
Confidence 457999999999999999999999988 8899999988765 4 38999999998875 5689999986 456554
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
...+.+..+|.++++.|+|||.|+++
T Consensus 116 ~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 116 IDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp CSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 45556888999999999999999863
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.53 E-value=4.1e-14 Score=136.89 Aligned_cols=137 Identities=16% Similarity=0.124 Sum_probs=100.1
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLPFFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lpf~d 336 (430)
++.+++.+......+|||||||.|.++.+++++ |++|+|+ ++|+...+.++++ |+ +.+...|. ++++
T Consensus 50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~gi--t~s~~q~~~a~~~~~~~~l~~~v~~~~~d~---~~~~ 124 (291)
T d1kpia_ 50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGL--TLSENQYAHDKAMFDEVDSPRRKEVRIQGW---EEFD 124 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEE--ESCHHHHHHHHHHHHHSCCSSCEEEEECCG---GGCC
T ss_pred HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeec--cchHHHHHHHHHHHHhhccchhhhhhhhcc---cccc
Confidence 445555444444456799999999999999977 9999988 6677776655443 54 55555554 4567
Q ss_pred CceeEEEEccchhhcCCc------hhHHHHHHHHHHhccCCcEEEEeeccccCc--------------------------
Q 043503 337 NTLDIVHSMHVLSNWIPD------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-------------------------- 384 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-------------------------- 384 (430)
++||.|++...++|+.+. .....+++++.|+|||||++++..+...+.
T Consensus 125 ~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiF 204 (291)
T d1kpia_ 125 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 204 (291)
T ss_dssp CCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred cccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhc
Confidence 899999999999885432 347899999999999999999866542111
Q ss_pred ---C--cHHHHHHHHHHcCCEEEEEEe
Q 043503 385 ---Q--LNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 385 ---~--~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
. -...+..++++.||++..+..
T Consensus 205 pgg~lps~~~~~~~~e~~gl~v~~~~~ 231 (291)
T d1kpia_ 205 PGGRLPRISQVDYYSSNAGWKVERYHR 231 (291)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCCCCHHHHHhhhcccccccceeee
Confidence 1 124577889999999988764
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=6.7e-14 Score=129.71 Aligned_cols=134 Identities=12% Similarity=0.003 Sum_probs=101.5
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc-----------------------CC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR-----------------------GL 321 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r-----------------------g~ 321 (430)
+.+++...++ .+|||+|||+|..+.+|+++|.+|+|+ |+|+.+++.++++ ..
T Consensus 37 ~~~~l~~~~~---~rvLd~GCG~G~~a~~LA~~G~~V~gv--D~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (229)
T d2bzga1 37 LDTFLKGKSG---LRVFFPLCGKAVEMKWFADRGHSVVGV--EISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGN 111 (229)
T ss_dssp HHHHHTTCCS---CEEEETTCTTCTHHHHHHHTTCEEEEE--CSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred HHHhcCCCCC---CEEEEeCCCCcHHHHHHHhCCCcEEEE--eCCHHHHHHHHHHhhccccccchhcccccceeeecCCc
Confidence 4455444443 345999999999999999999999998 8899999887654 13
Q ss_pred eeEEEcccccCC-CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC--------cHHHHHH
Q 043503 322 ISMHISVSQRLP-FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ--------LNETYVP 392 (430)
Q Consensus 322 i~~~~~d~~~lp-f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~--------~~~~~~~ 392 (430)
+.++++|+..++ ...+.||+|+...++++ ++.+....++.++.++|||||++++..+...... ..+++..
T Consensus 112 v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~-~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~ 190 (229)
T d2bzga1 112 ISLYCCSIFDLPRTNIGKFDMIWDRGALVA-INPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIER 190 (229)
T ss_dssp EEEEESCGGGGGGSCCCCEEEEEESSSTTT-SCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHH
T ss_pred EEEEEcchhhccccccCceeEEEEEEEEEe-ccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHH
Confidence 678888887765 56789999999999966 4444688999999999999999888776542211 2356777
Q ss_pred HHHHcCCEEEEEE
Q 043503 393 MLDRIGFKKLRWN 405 (430)
Q Consensus 393 ll~~~Gfk~l~~~ 405 (430)
++.. +|.+..+.
T Consensus 191 lf~~-~~~i~~le 202 (229)
T d2bzga1 191 LFGK-ICNIRCLE 202 (229)
T ss_dssp HHTT-TEEEEEEE
T ss_pred HhcC-CCEEEEEE
Confidence 7754 67765554
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.52 E-value=7.1e-14 Score=134.39 Aligned_cols=135 Identities=17% Similarity=0.166 Sum_probs=100.6
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLPFFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lpf~d 336 (430)
++.+++.+......+|||||||.|.++.+++++ |++|+++ ++|+.+.+.|+++ |+ +.+...|...+ +
T Consensus 41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi--~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~ 115 (280)
T d2fk8a1 41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGL--TLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---A 115 (280)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEE--ESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---C
T ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEe--cchHHHHHHHHHHHHhhccccchhhhhhhhhhh---c
Confidence 566666554444556799999999999999987 9999998 6778888777654 43 55666666554 4
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc-----------------------------C--
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-----------------------------Q-- 385 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-----------------------------~-- 385 (430)
++||.|++..+++| +.+.....+++++.|+|||||.+++.+...... .
T Consensus 116 ~~fD~i~si~~~eh-~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lP 194 (280)
T d2fk8a1 116 EPVDRIVSIEAFEH-FGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLP 194 (280)
T ss_dssp CCCSEEEEESCGGG-TCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred cchhhhhHhhHHHH-hhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCccc
Confidence 78999999999977 555467899999999999999999865332110 0
Q ss_pred cHHHHHHHHHHcCCEEEEEE
Q 043503 386 LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 386 ~~~~~~~ll~~~Gfk~l~~~ 405 (430)
-...+.+++++.||++..+.
T Consensus 195 S~~~l~~~~e~aGf~v~~~~ 214 (280)
T d2fk8a1 195 STEMMVEHGEKAGFTVPEPL 214 (280)
T ss_dssp CHHHHHHHHHHTTCBCCCCE
T ss_pred chHhhhhhHHhhccccceee
Confidence 12446778889999987654
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.51 E-value=1.5e-13 Score=132.46 Aligned_cols=136 Identities=17% Similarity=0.155 Sum_probs=102.8
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLPFFE 336 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lpf~d 336 (430)
++.+++.+..+...+|||||||.|.++.++++. |++|+|+ ++|+...+.|+++ |+ +.+...|...++
T Consensus 51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~gi--t~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 125 (285)
T d1kpga_ 51 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGL--TLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--- 125 (285)
T ss_dssp HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEE--ESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---
T ss_pred HHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEE--eccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---
Confidence 455555555455566799999999999998887 9999998 6677777666544 43 788888887665
Q ss_pred CceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc-----------------------------C--
Q 043503 337 NTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-----------------------------Q-- 385 (430)
Q Consensus 337 ~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-----------------------------~-- 385 (430)
++||.|++...++|+.. .....+++++.|+|||||.+++.++....+ .
T Consensus 126 ~~fD~i~si~~~eh~~~-~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lP 204 (285)
T d1kpga_ 126 EPVDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLP 204 (285)
T ss_dssp CCCSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCC
T ss_pred ccccceeeehhhhhcCc-hhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCC
Confidence 68999999999988543 347889999999999999999866542110 0
Q ss_pred cHHHHHHHHHHcCCEEEEEEe
Q 043503 386 LNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 386 ~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
-...+..++++.||++..+..
T Consensus 205 sl~~~~~~~e~agf~v~~~~~ 225 (285)
T d1kpga_ 205 SIPMVQECASANGFTVTRVQS 225 (285)
T ss_dssp CHHHHHHHHHTTTCEEEEEEE
T ss_pred ChhhHHHHHHHhchhhccccc
Confidence 124567789999999988753
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.49 E-value=2e-13 Score=129.17 Aligned_cols=138 Identities=21% Similarity=0.208 Sum_probs=101.8
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFF 335 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~ 335 (430)
++.++...+-...++|||||||+|.++..++++ +.+++++|+ +.+++.++++ | .+.++.+|... +.+
T Consensus 70 ~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl---p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p 145 (256)
T d1qzza2 70 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL---AGPAERARRRFADAGLADRVTVAEGDFFK-PLP 145 (256)
T ss_dssp THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC---HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS
T ss_pred HHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC---hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc
Confidence 344555556566788899999999999999998 678888754 5566555432 3 37888887654 333
Q ss_pred CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC-----------------------cHHHHHH
Q 043503 336 ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-----------------------LNETYVP 392 (430)
Q Consensus 336 d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-----------------------~~~~~~~ 392 (430)
.+||+|++.+++++|. ++....+|++++++|||||+|++.++...... ..++|.+
T Consensus 146 -~~~D~v~~~~vLh~~~-d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ 223 (256)
T d1qzza2 146 -VTADVVLLSFVLLNWS-DEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVD 223 (256)
T ss_dssp -CCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHH
T ss_pred -ccchhhhccccccccC-cHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHH
Confidence 4699999999997764 44577899999999999999998776532111 2356899
Q ss_pred HHHHcCCEEEEEEecc
Q 043503 393 MLDRIGFKKLRWNVGM 408 (430)
Q Consensus 393 ll~~~Gfk~l~~~~~~ 408 (430)
+++++||+.++.....
T Consensus 224 ll~~AGf~~~~~~~~~ 239 (256)
T d1qzza2 224 LAGSAGLALASERTSG 239 (256)
T ss_dssp HHHTTTEEEEEEEEEC
T ss_pred HHHHCCCceeEEEEeC
Confidence 9999999998866443
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=3.6e-14 Score=135.11 Aligned_cols=92 Identities=21% Similarity=0.329 Sum_probs=78.8
Q ss_pred ccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcC-CeeEEEcccccCCCCCCceeEEEEccchhhcCC
Q 043503 277 IRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRG-LISMHISVSQRLPFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg-~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~ 353 (430)
..+|||||||+|.++..+++. +.+++|+ |+++.|++.|+++. .+.+.++|++.+|+++++||+|++.++..+
T Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~~gi--D~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 85 ATAVLDIGCGEGYYTHAFADALPEITTFGL--DVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTSEEEEE--ESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCEEEEeCCCCcHHHHHHHHHCCCCEEEEe--cchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 356799999999999999998 6788887 77899999998774 489999999999999999999999766532
Q ss_pred chhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
+.|+.|+|||||++++..+.
T Consensus 160 -------~~e~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 160 -------AEELARVVKPGGWVITATPG 179 (268)
T ss_dssp -------HHHHHHHEEEEEEEEEEEEC
T ss_pred -------HHHHHHHhCCCcEEEEEeeC
Confidence 56899999999999998643
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.47 E-value=7.1e-14 Score=131.26 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=81.0
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCC-CCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPF-FENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf-~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|..+..+++.+. +|+|+ |+|+.|++.|+++ + .+.++++|+...++ .+++||+|+|..++
T Consensus 26 ~~VLDlGCG~G~~~~~~~~~~~~~v~Gi--D~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l 103 (252)
T d1ri5a_ 26 DSVLDLGCGKGGDLLKYERAGIGEYYGV--DIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 103 (252)
T ss_dssp CEEEEETCTTTTTHHHHHHHTCSEEEEE--ESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CEEEEecccCcHHHHHHHHcCCCeEEEe--cCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEccee
Confidence 3469999999999999998864 78888 7789999988765 2 27889999877765 47789999999999
Q ss_pred hhcC-CchhHHHHHHHHHHhccCCcEEEEe
Q 043503 349 SNWI-PDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 349 ~~~~-~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+++. +.+.+..++.++.|+|||||+|+++
T Consensus 104 ~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 104 HYAFSTSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence 6654 3345788999999999999999875
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.45 E-value=1.1e-13 Score=125.39 Aligned_cols=116 Identities=15% Similarity=0.166 Sum_probs=85.9
Q ss_pred CCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC----eeEEEccc
Q 043503 258 NGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL----ISMHISVS 329 (430)
Q Consensus 258 ~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~----i~~~~~d~ 329 (430)
.+..+...+.++..++.....+|||+|||+|.++..+++.+.+|+++ |+++.+.+.++++ +. +.+..+|.
T Consensus 34 ~~~~d~~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~i--D~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~ 111 (194)
T d1dusa_ 34 YGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMA--DINRRAIKLAKENIKLNNLDNYDIRVVHSDL 111 (194)
T ss_dssp TTSCCHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEE--ESCHHHHHHHHHHHHHTTCTTSCEEEEECST
T ss_pred CCCcCHHHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcccccee--eeccccchhHHHHHHHhCCccceEEEEEcch
Confidence 33334333444444554555678999999999999999988899988 5667777777653 22 77888887
Q ss_pred ccCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 330 QRLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 330 ~~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
.. ++++++||+|+++.++++ . ....+.++.++.+.|+|||.+++..
T Consensus 112 ~~-~~~~~~fD~Ii~~~p~~~-~-~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 112 YE-NVKDRKYNKIITNPPIRA-G-KEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp TT-TCTTSCEEEEEECCCSTT-C-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hh-hhccCCceEEEEcccEEe-c-chhhhhHHHHHHHhcCcCcEEEEEE
Confidence 65 567889999999877633 3 2236789999999999999998753
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=4.2e-14 Score=131.84 Aligned_cols=128 Identities=13% Similarity=0.064 Sum_probs=93.6
Q ss_pred ccEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----CC-e----------------------------
Q 043503 277 IRIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----GL-I---------------------------- 322 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g~-i---------------------------- 322 (430)
..+|||||||+|.++..++..+. +|+++ |+|+.|++.|+++ +. +
T Consensus 52 g~~vLDlGcG~G~~~~~~~~~~~~~v~gi--D~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T d2a14a1 52 GDTLIDIGSGPTIYQVLAACDSFQDITLS--DFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129 (257)
T ss_dssp EEEEEESSCTTCCGGGTTGGGTEEEEEEE--ESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCEEEEECCCCCHhHHHHhccccCcEEEe--cCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence 34679999999999888887755 68888 7789999888654 10 0
Q ss_pred ---eEEEc----ccccCCCCCCceeEEEEccchhhcCCc-hhHHHHHHHHHHhccCCcEEEEeeccccCc----------
Q 043503 323 ---SMHIS----VSQRLPFFENTLDIVHSMHVLSNWIPD-SMLEFTLYDIYRLLRPGGIFWLDRFFCFGS---------- 384 (430)
Q Consensus 323 ---~~~~~----d~~~lpf~d~sfDlV~~~~~L~~~~~d-~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~---------- 384 (430)
..... +....++++++||+|++..+++|.... +....++.++.|+|||||+|++..+.....
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~ 209 (257)
T d2a14a1 130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC 209 (257)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccc
Confidence 01111 122235678999999999999775432 347789999999999999999976553211
Q ss_pred --CcHHHHHHHHHHcCCEEEEEEe
Q 043503 385 --QLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 385 --~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
-..+++.++++++||.++....
T Consensus 210 ~~~~~~~~~~~l~~aGf~v~~~~~ 233 (257)
T d2a14a1 210 VALEKGEVEQAVLDAGFDIEQLLH 233 (257)
T ss_dssp CCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCCHHHHHHHHHHCCCEEEEEEE
Confidence 1247899999999999888753
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.42 E-value=3.4e-13 Score=121.31 Aligned_cols=115 Identities=18% Similarity=0.202 Sum_probs=90.0
Q ss_pred CCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----C---CeeEEEcccccCCCCCCceeEEEEccc
Q 043503 275 GTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----G---LISMHISVSQRLPFFENTLDIVHSMHV 347 (430)
Q Consensus 275 ~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~lpf~d~sfDlV~~~~~ 347 (430)
.+..+|||+|||+|.++..++..+.+|+++ |.++.+++.|+++ | .+.++++|+...+++...||+|++...
T Consensus 32 ~~g~~VLDiGcGsG~~s~~lA~~~~~V~av--D~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~ 109 (186)
T d1l3ia_ 32 GKNDVAVDVGCGTGGVTLELAGRVRRVYAI--DRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGS 109 (186)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTSSEEEEE--ESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCC
T ss_pred CCCCEEEEEECCeEcccccccccceEEEEe--cCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCc
Confidence 344567999999999999999988899988 6678888777665 4 388999998888777889999999754
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCE
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFK 400 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk 400 (430)
..+ ...++.++.+.|||||++++..... +......+.+.+.||.
T Consensus 110 ~~~------~~~~~~~~~~~LkpgG~lvi~~~~~---e~~~~~~~~l~~~~~~ 153 (186)
T d1l3ia_ 110 GGE------LQEILRIIKDKLKPGGRIIVTAILL---ETKFEAMECLRDLGFD 153 (186)
T ss_dssp TTC------HHHHHHHHHHTEEEEEEEEEEECBH---HHHHHHHHHHHHTTCC
T ss_pred ccc------chHHHHHHHHHhCcCCEEEEEeecc---ccHHHHHHHHHHcCCC
Confidence 422 5678999999999999998865331 1224456678888874
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.41 E-value=1e-12 Score=122.73 Aligned_cols=136 Identities=12% Similarity=0.041 Sum_probs=96.6
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccC-CCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRL-PFFEN 337 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~l-pf~d~ 337 (430)
+..-+..++.....+|||+|||+|+++..+++. +..|+++ |+++.|++.+.++ +.+..+..+.... ++.+.
T Consensus 63 i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aV--DiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~ 140 (230)
T d1g8sa_ 63 IIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAI--EYAPRIMRELLDACAERENIIPILGDANKPQEYANI 140 (230)
T ss_dssp HHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEE--ESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTT
T ss_pred HHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEE--eCcHHHHHHHHHHHhhhcccceEEEeeccCcccccc
Confidence 333334444444456799999999999999987 4689988 7788888877654 4566666665543 35667
Q ss_pred ceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC------cHHHHHHHHHHcCCEEEEEE
Q 043503 338 TLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ------LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 338 sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~------~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.+|++++...+.+ .++ ...++.++.++|||||++++......... ..++..+.+++.||++++..
T Consensus 141 ~~~v~~i~~~~~~-~~~--~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~i 211 (230)
T d1g8sa_ 141 VEKVDVIYEDVAQ-PNQ--AEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEV 211 (230)
T ss_dssp CCCEEEEEECCCS-TTH--HHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred cceeEEeeccccc-hHH--HHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence 7787777555533 333 78899999999999999998754432211 23567788999999988754
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.4e-12 Score=122.02 Aligned_cols=126 Identities=18% Similarity=0.194 Sum_probs=89.2
Q ss_pred EEEEEcCCccHHHHHHHHc------CCEEEEEecCCChhHHHHHHhc-------CCe--eEEEccccc------CCCCCC
Q 043503 279 IGLDIGGGTGTFAARMRER------NVTIITTSLNLDGPFNSFIASR-------GLI--SMHISVSQR------LPFFEN 337 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~------g~~Vv~vdiD~s~~~le~a~~r-------g~i--~~~~~d~~~------lpf~d~ 337 (430)
+|||||||+|.++..++.. +..+..+++|+++.|++.++++ ..+ .+...+++. .+++++
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ 122 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence 5799999999998877654 3333333448999999988765 112 333433332 246789
Q ss_pred ceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC---------------c-----CcHHHHHHHHHHc
Q 043503 338 TLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG---------------S-----QLNETYVPMLDRI 397 (430)
Q Consensus 338 sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~---------------~-----~~~~~~~~ll~~~ 397 (430)
+||+|+|.++++ |+++ +..+|.++.++|+|||++++..+-... + -..+.+..++++.
T Consensus 123 ~fD~I~~~~~l~-~~~d--~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 199 (280)
T d1jqea_ 123 KWDFIHMIQMLY-YVKD--IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNL 199 (280)
T ss_dssp CEEEEEEESCGG-GCSC--HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHHHHHH
T ss_pred ceeEEEEcccee-cCCC--HHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHC
Confidence 999999999995 5766 789999999999999999886432110 0 0234588899999
Q ss_pred CCEEEEEEec
Q 043503 398 GFKKLRWNVG 407 (430)
Q Consensus 398 Gfk~l~~~~~ 407 (430)
||+.......
T Consensus 200 G~~~~~~~~~ 209 (280)
T d1jqea_ 200 GLKYECYDLL 209 (280)
T ss_dssp TCCEEEEEEC
T ss_pred CCceEEEecc
Confidence 9987665544
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.34 E-value=1.3e-12 Score=125.13 Aligned_cols=98 Identities=17% Similarity=0.276 Sum_probs=73.6
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC------eeEEEccccc----CCCCCCceeEEE
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL------ISMHISVSQR----LPFFENTLDIVH 343 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~------i~~~~~d~~~----lpf~d~sfDlV~ 343 (430)
++|||+|||+|.++..|+++|.+|+|+ |+|+.|++.|+++ +. ..+...++.. +| +.++||+|+
T Consensus 58 ~~vLD~GcG~G~~~~~la~~g~~v~gv--D~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fd~v~ 134 (292)
T d1xvaa_ 58 HRVLDVACGTGVDSIMLVEEGFSVTSV--DASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDGFDAVI 134 (292)
T ss_dssp CEEEESSCTTSHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CTTCEEEEE
T ss_pred CEEEEecCCCcHHHHHHHHcCCeeeec--cCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-CCCCceEEE
Confidence 456999999999999999999999998 7889999888754 22 2233333322 22 356899999
Q ss_pred Ecc-chhhcCC----chhHHHHHHHHHHhccCCcEEEEee
Q 043503 344 SMH-VLSNWIP----DSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 344 ~~~-~L~~~~~----d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
|.. ++.|+.. ......+|+++.|+|||||+|+++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 135 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp ECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 864 6655432 1347789999999999999999864
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2.1e-12 Score=122.27 Aligned_cols=128 Identities=21% Similarity=0.122 Sum_probs=91.7
Q ss_pred cEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc-----CCe-----------------------------
Q 043503 278 RIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR-----GLI----------------------------- 322 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r-----g~i----------------------------- 322 (430)
+++||+|||+|.+....+.. ..+|+++ |+++.|++.++++ +.+
T Consensus 56 ~~vLDiGcG~g~~~~~~~~~~~~~v~~~--D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T d2g72a1 56 RTLIDIGSGPTVYQLLSACSHFEDITMT--DFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 133 (263)
T ss_dssp SEEEEETCTTCCGGGTTGGGGCSEEEEE--CSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred cEEEEeccCCCHHHHHHhcccCCeEEEE--eCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhh
Confidence 46799999999887665554 6689988 8899999887643 101
Q ss_pred --eEEEcccc------cCCCCCCceeEEEEccchhhcCCc-hhHHHHHHHHHHhccCCcEEEEeeccccCc---------
Q 043503 323 --SMHISVSQ------RLPFFENTLDIVHSMHVLSNWIPD-SMLEFTLYDIYRLLRPGGIFWLDRFFCFGS--------- 384 (430)
Q Consensus 323 --~~~~~d~~------~lpf~d~sfDlV~~~~~L~~~~~d-~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~--------- 384 (430)
.+...|.. ..++.+++||+|++.+++++..++ +....+++++.++|||||+|++........
T Consensus 134 ~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~ 213 (263)
T d2g72a1 134 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLT 213 (263)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEE
T ss_pred hhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccc
Confidence 12223332 223456789999999999765443 347889999999999999998865543211
Q ss_pred ---CcHHHHHHHHHHcCCEEEEEEec
Q 043503 385 ---QLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 385 ---~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
-..+++.++++++||.++.....
T Consensus 214 ~~~~t~e~v~~~l~~aGf~v~~~~~~ 239 (263)
T d2g72a1 214 VVPVSEEEVREALVRSGYKVRDLRTY 239 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 13478999999999998876644
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.31 E-value=8.9e-12 Score=114.25 Aligned_cols=123 Identities=15% Similarity=0.163 Sum_probs=91.2
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHh----cCC--eeEEEcccccCC--CCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIAS----RGL--ISMHISVSQRLP--FFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~----rg~--i~~~~~d~~~lp--f~d~sfDlV~~~~~ 347 (430)
.+|||||||+|.++..+|++ +..++|+ |++.+++..+.+ .|+ +.++.+|+..+. ++++++|.|++.+.
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGi--D~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGI--ELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEE--CSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEe--ecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 46899999999999999998 6788888 777888766543 344 889999988776 78999999999766
Q ss_pred hhhcCCchh------HHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEe
Q 043503 348 LSNWIPDSM------LEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 348 L~~~~~d~~------l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
. .|..... ...++.++.|+|||||.|++.+ ......+...+.+...++.......
T Consensus 109 ~-P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T---D~~~y~~~~~~~~~~~~~~~~~~~~ 169 (204)
T d2fcaa1 109 D-PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT---DNRGLFEYSLKSFSEYGLLLTYVSL 169 (204)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE---SCHHHHHHHHHHHHHHTCEEEEEES
T ss_pred c-ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE---CChHHHHHHHHHHHHCCCccccCCh
Confidence 5 4443211 1479999999999999998853 2223344556677777876554443
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=9e-13 Score=122.27 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=85.2
Q ss_pred cEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHhcC----C-eeEEEccccc--CCCCCCceeEEEE-----
Q 043503 278 RIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIASRG----L-ISMHISVSQR--LPFFENTLDIVHS----- 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~rg----~-i~~~~~d~~~--lpf~d~sfDlV~~----- 344 (430)
.+|||||||+|.++..+++.+ .+|+++ |+++.+++.|+++. . +.++..++.. .++++++||.|+.
T Consensus 55 ~~VLdIGcG~G~~a~~~a~~~~~~v~~i--d~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~ 132 (229)
T d1zx0a1 55 GRVLEVGFGMAIAASKVQEAPIDEHWII--ECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 132 (229)
T ss_dssp EEEEEECCTTSHHHHHHHTSCEEEEEEE--ECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEeeccchHHHHHHHHcCCCeEEEe--CCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccc
Confidence 456999999999999999874 578877 77799999887662 2 5566666543 3567899999984
Q ss_pred ccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc-------C----cHHHHHHHHHHcCCEEEE
Q 043503 345 MHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS-------Q----LNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 345 ~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~-------~----~~~~~~~ll~~~Gfk~l~ 403 (430)
...+.| .. ....++.++.|+|||||+|++........ . ..+.+...+.+.||+...
T Consensus 133 ~~~~~~-~~--~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agF~~~~ 199 (229)
T d1zx0a1 133 SEETWH-TH--QFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRREN 199 (229)
T ss_dssp BGGGTT-TH--HHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCGGG
T ss_pred cccccc-cc--CHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcchhhhhHHHHHHHHCCCeeEE
Confidence 333433 22 37789999999999999998754332110 1 223456677889997443
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.26 E-value=1.3e-11 Score=116.04 Aligned_cols=134 Identities=18% Similarity=0.161 Sum_probs=101.3
Q ss_pred HHHHHccCC-CCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeE
Q 043503 265 IDQVLSMKP-LGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDI 341 (430)
Q Consensus 265 id~lL~~~p-~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDl 341 (430)
.+.++...+ ...+++|||||||+|.++..++++ +.+++..|+ +..++.+.....+.++.+|+.. +.| ..|+
T Consensus 69 ~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl---p~vi~~~~~~~ri~~~~gd~~~-~~p--~~D~ 142 (244)
T d1fp1d2 69 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL---PQVIENAPPLSGIEHVGGDMFA-SVP--QGDA 142 (244)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC---HHHHTTCCCCTTEEEEECCTTT-CCC--CEEE
T ss_pred HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc---hhhhhccCCCCCeEEecCCccc-ccc--cceE
Confidence 455565555 466788999999999999999998 677777754 4444443334558999998743 333 4599
Q ss_pred EEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC-------------------------cHHHHHHHHHH
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ-------------------------LNETYVPMLDR 396 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~-------------------------~~~~~~~ll~~ 396 (430)
|++.+++++|. ++....+|++++++|+|||.+++.+++..+.. ..++|..++++
T Consensus 143 ~~l~~vLh~~~-de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~ 221 (244)
T d1fp1d2 143 MILKAVCHNWS-DEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKL 221 (244)
T ss_dssp EEEESSGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHH
T ss_pred EEEehhhhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHH
Confidence 99999998874 44688999999999999999999887642211 13578999999
Q ss_pred cCCEEEEEE
Q 043503 397 IGFKKLRWN 405 (430)
Q Consensus 397 ~Gfk~l~~~ 405 (430)
+||+.++..
T Consensus 222 AGF~~v~v~ 230 (244)
T d1fp1d2 222 SGFSKFQVA 230 (244)
T ss_dssp TTCSEEEEE
T ss_pred cCCCceEEE
Confidence 999988864
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.22 E-value=1.1e-11 Score=117.92 Aligned_cols=121 Identities=13% Similarity=0.114 Sum_probs=89.6
Q ss_pred HHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc---------CCeeEEEcccccCCC
Q 043503 267 QVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR---------GLISMHISVSQRLPF 334 (430)
Q Consensus 267 ~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r---------g~i~~~~~d~~~lpf 334 (430)
..+...|+. +|||+|||+|.++..|++. +.+|+++ |.++.+++.|+++ ..+.+.++|....++
T Consensus 90 ~~l~i~PG~---~VLE~G~GsG~lt~~La~~vgp~G~V~~~--d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~ 164 (264)
T d1i9ga_ 90 HEGDIFPGA---RVLEAGAGSGALTLSLLRAVGPAGQVISY--EQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 164 (264)
T ss_dssp HHTTCCTTC---EEEEECCTTSHHHHHHHHHHCTTSEEEEE--CSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHhCCCCCC---EEEecCcCCcHHHHHHHHhhCCCcEEEEe--cCCHHHHHHHHHhhhhhccCCCceEEEEecccccccc
Confidence 344455554 4599999999999999987 4688888 7789998888764 237888999988889
Q ss_pred CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEE
Q 043503 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
++++||.|++ + +++ ...++.++.|+|||||.+++.. +.-++..+.+..+-++.||..+
T Consensus 165 ~~~~fDaV~l-----d-lp~--P~~~l~~~~~~LkpGG~lv~~~--P~i~Qv~~~~~~l~~~~~f~~i 222 (264)
T d1i9ga_ 165 PDGSVDRAVL-----D-MLA--PWEVLDAVSRLLVAGGVLMVYV--ATVTQLSRIVEALRAKQCWTEP 222 (264)
T ss_dssp CTTCEEEEEE-----E-SSC--GGGGHHHHHHHEEEEEEEEEEE--SSHHHHHHHHHHHHHHSSBCCC
T ss_pred cCCCcceEEE-----e-cCC--HHHHHHHHHhccCCCCEEEEEe--CccChHHHHHHHHHHcCCeecc
Confidence 9999999987 2 344 4578999999999999998743 2223344445554456778643
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.22 E-value=7.2e-11 Score=108.09 Aligned_cols=120 Identities=18% Similarity=0.271 Sum_probs=88.4
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHh----cCC--eeEEEcccccCC--CCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIAS----RGL--ISMHISVSQRLP--FFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~----rg~--i~~~~~d~~~lp--f~d~sfDlV~~~~~ 347 (430)
.+|||||||+|.++..+|+. +..++|+ |+++.++..|.+ .++ +.++.+|+..+. +++.++|.|++.+.
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGi--d~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGI--DIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEE--ESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEE--eccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 46899999999999999998 6788888 667777766543 344 889999988776 78899999998654
Q ss_pred hhhcCCch------hHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 348 LSNWIPDS------MLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 348 L~~~~~d~------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
- .|.... ....+|..+.|+|+|||.|++.+ ......+.....+...++....
T Consensus 111 d-Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T---D~~~Y~~~~le~~~~~~~~~~~ 168 (204)
T d1yzha1 111 D-PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT---DNRGLFEYSLVSFSQYGMKLNG 168 (204)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE---SCHHHHHHHHHHHHHHTCEEEE
T ss_pred c-cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE---CCccHHHHHHHHHHHCCccccc
Confidence 4 444321 12579999999999999998853 1222334455667777877554
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.22 E-value=2.1e-11 Score=111.99 Aligned_cols=120 Identities=12% Similarity=0.080 Sum_probs=81.6
Q ss_pred cEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHh----cCCeeEEEcccccCCCCCCc---eeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIAS----RGLISMHISVSQRLPFFENT---LDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~----rg~i~~~~~d~~~lpf~d~s---fDlV~~~~~L 348 (430)
.+|||+|||+|..+..+++. ..+|+++ |+++.|++.+.+ ++.+.++..+....+.+... +|+|++ .+
T Consensus 58 ~~VLDlGcG~G~~~~~la~~v~~g~V~gv--Dis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~--~~ 133 (209)
T d1nt2a_ 58 ERVLYLGAASGTTVSHLADIVDEGIIYAV--EYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQ--DI 133 (209)
T ss_dssp CEEEEETCTTSHHHHHHHHHTTTSEEEEE--CCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEE--CC
T ss_pred CEEEEeCCcCCHHHHHHHHhccCCeEEEE--eCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEe--cc
Confidence 45699999999999999986 4589988 888988876643 47788888888776544444 455444 23
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeeccc-cCc--C---cHHHHHHHHHHcCCEEEEEE
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC-FGS--Q---LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~-~~~--~---~~~~~~~ll~~~Gfk~l~~~ 405 (430)
.| .. ....++.++.|+|||||++++..... .+. + ..+.....+ +.||++++..
T Consensus 134 ~~-~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l-~~gf~i~E~i 192 (209)
T d1nt2a_ 134 AQ-KN--QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEM-EGDFKIVKHG 192 (209)
T ss_dssp CS-TT--HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHH-HTTSEEEEEE
T ss_pred cC-hh--hHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHH-HcCCEEEEEE
Confidence 22 22 36789999999999999999865432 111 1 112222222 3699988754
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.21 E-value=2.3e-11 Score=111.87 Aligned_cols=90 Identities=18% Similarity=0.189 Sum_probs=71.3
Q ss_pred ccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----C--CeeEEEcccccCCCCCCceeEEEEccc
Q 043503 277 IRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----G--LISMHISVSQRLPFFENTLDIVHSMHV 347 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~lpf~d~sfDlV~~~~~ 347 (430)
..+|||||||+|.+++.+++. +.+|+++ |.++.+.+.|+++ + .+.+.++|.....+.+++||+|++..+
T Consensus 76 g~~VLdiG~GtG~~s~~la~~~~~~g~V~~i--d~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (213)
T d1dl5a1 76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSV--EYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVG 153 (213)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEE--ESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred cceEEEecCccchhHHHHHHHhCCCCcEEEe--ecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhcc
Confidence 345699999999999999886 4578887 6678888887765 2 367788888877777889999999888
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+.+ +++ ++.++|||||++++.
T Consensus 154 ~~~-~p~--------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 154 VDE-VPE--------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp BSC-CCH--------HHHHHEEEEEEEEEE
T ss_pred HHH-hHH--------HHHHhcCCCcEEEEE
Confidence 754 443 467889999999873
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=4.5e-11 Score=115.42 Aligned_cols=97 Identities=20% Similarity=0.287 Sum_probs=76.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHH---HHHhcCC---eeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNS---FIASRGL---ISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le---~a~~rg~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
++|||||||+|.++..+++.|+ +|+++ |.++.+.. .+++++. +.++.++.+.+++++++||+|++......
T Consensus 37 ~~VLDiGcG~G~lsl~aa~~Ga~~V~ai--d~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~ 114 (311)
T d2fyta1 37 KVVLDVGCGTGILSMFAAKAGAKKVLGV--DQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYF 114 (311)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEE--ESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTT
T ss_pred CEEEEECCCCCHHHHHHHHcCCCEEEEE--eCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeeee
Confidence 4579999999999999999975 78888 55565543 2233333 88999999999999999999999655544
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
...+..+..++....|.|||||+++-
T Consensus 115 ~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 115 LLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp BTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred cccccccHHHHHHHHhcCCCCcEEec
Confidence 44555677888889999999999863
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.15 E-value=3.7e-11 Score=113.46 Aligned_cols=112 Identities=20% Similarity=0.160 Sum_probs=83.9
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc-------CCeeEEEcccccCCCCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR-------GLISMHISVSQRLPFFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~~~lpf~d~sfDlV~~~~~ 347 (430)
.+|||+|||+|.++..|++. +.+|+++ |.++.+++.|+++ +.+.+..+|.... +++++||.|++.
T Consensus 87 ~rVLEiG~GsG~lt~~la~~v~~~g~V~~v--D~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~ld-- 161 (250)
T d1yb2a1 87 MDILEVGVGSGNMSSYILYALNGKGTLTVV--ERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIAD-- 161 (250)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTTSSEEEEE--CSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEEC--
T ss_pred CEEEEeeeeCcHHHHHHHHHhCCCcEEEEE--ECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeeec--
Confidence 45699999999999999986 4688888 7789999888765 2388888988765 467899999972
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
+++ ...++.++.++|||||++++.... -++ .....+.+++.||..++
T Consensus 162 ----~p~--p~~~l~~~~~~LKpGG~lv~~~P~--i~Q-v~~~~~~l~~~gf~~i~ 208 (250)
T d1yb2a1 162 ----IPD--PWNHVQKIASMMKPGSVATFYLPN--FDQ-SEKTVLSLSASGMHHLE 208 (250)
T ss_dssp ----CSC--GGGSHHHHHHTEEEEEEEEEEESS--HHH-HHHHHHHSGGGTEEEEE
T ss_pred ----CCc--hHHHHHHHHHhcCCCceEEEEeCC--cCh-HHHHHHHHHHCCCceeE
Confidence 233 346799999999999999874321 112 23455567779997554
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=9.4e-11 Score=113.61 Aligned_cols=98 Identities=18% Similarity=0.251 Sum_probs=75.1
Q ss_pred cEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChh-HHHHHHhcCC---eeEEEcccccCCCCCCceeEEEEccchhhcC
Q 043503 278 RIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGP-FNSFIASRGL---ISMHISVSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~-~le~a~~rg~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
++|||||||+|.++..+++.| .+|+++|.+.... ..+.++.++. +.++.++...++++.++||+|++........
T Consensus 35 ~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~ 114 (316)
T d1oria_ 35 KVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLF 114 (316)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBT
T ss_pred CEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeeeec
Confidence 457999999999999999997 4788885542211 1233344443 8999999999999999999999965554433
Q ss_pred CchhHHHHHHHHHHhccCCcEEE
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lv 375 (430)
.+..+..++..+.|+|+|||.++
T Consensus 115 ~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 115 YESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp BTCCHHHHHHHHHHHEEEEEEEE
T ss_pred cHHHHHHHHHHHHhcCCCCeEEE
Confidence 44458899999999999999986
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.12 E-value=9.7e-11 Score=114.02 Aligned_cols=95 Identities=21% Similarity=0.320 Sum_probs=74.9
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHH----HhcCC---eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFI----ASRGL---ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a----~~rg~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||||||+|.++..++++|+ +|+++|. ++ +.+.+ ++++. +.++.++...+++++++||+|++.....
T Consensus 40 ~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~--s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 40 KIVLDVGCGTGILSMFAAKHGAKHVIGVDM--SS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCSEEEEEES--ST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCEEEEEeC--CH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 3469999999999999999975 7888854 43 33333 33443 8899999999999999999999976664
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lv 375 (430)
....+..+..++..+.|+|||||.++
T Consensus 117 ~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccchhHHHHHHHHHhccCCCeEEE
Confidence 44444558889999999999999985
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=1.3e-10 Score=107.70 Aligned_cols=89 Identities=19% Similarity=0.264 Sum_probs=71.3
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc-----------CCeeEEEcccccCCCCCCceeEEE
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR-----------GLISMHISVSQRLPFFENTLDIVH 343 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r-----------g~i~~~~~d~~~lpf~d~sfDlV~ 343 (430)
.+|||||||+|..++.|++. ..+|+++ |.++.+.+.|+++ +.+.+..+|....+.++++||+|+
T Consensus 78 ~~VLdiG~GsGy~ta~la~l~~~~g~V~~i--e~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~ 155 (224)
T d1i1na_ 78 AKALDVGSGSGILTACFARMVGCTGKVIGI--DHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIH 155 (224)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTCEEEEE--ESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHhCCCceEEEE--cCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhhh
Confidence 35699999999999999886 4688888 6678888777543 337888899888777888999999
Q ss_pred EccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 344 SMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 344 ~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+..++.+ +++ ++.+.|||||++++.
T Consensus 156 ~~~~~~~-ip~--------~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 156 VGAAAPV-VPQ--------ALIDQLKPGGRLILP 180 (224)
T ss_dssp ECSBBSS-CCH--------HHHHTEEEEEEEEEE
T ss_pred hhcchhh-cCH--------HHHhhcCCCcEEEEE
Confidence 9887744 543 567899999999873
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.11 E-value=8e-10 Score=102.63 Aligned_cols=128 Identities=12% Similarity=0.012 Sum_probs=86.7
Q ss_pred ccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CCeeEEEccccc---CCCCCCce
Q 043503 270 SMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GLISMHISVSQR---LPFFENTL 339 (430)
Q Consensus 270 ~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~---lpf~d~sf 339 (430)
..++.....+|||+|||+|.++..+++. +.+|+++ |+++.|++.+.++ +.+..+..|... .+.....+
T Consensus 67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aV--D~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~v 144 (227)
T d1g8aa_ 67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGI--EFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEE--ESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCE
T ss_pred cccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEE--eCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccce
Confidence 3334444456799999999999999997 4689988 7778887766543 556666666533 33455789
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC-c-----CcHHHHHHHHHHcCCEEEEEE
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG-S-----QLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~-~-----~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
|+|++.. . + ++ ....++.++.++|||||+++++.+.... . ...+.... +.+.||+.++..
T Consensus 145 D~i~~d~-~-~--~~-~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~-l~~~gf~iie~i 210 (227)
T d1g8aa_ 145 DVIFEDV-A-Q--PT-QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVER-ELSEYFEVIERL 210 (227)
T ss_dssp EEEEECC-C-S--TT-HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHH-HHHTTSEEEEEE
T ss_pred EEEEEEc-c-c--cc-hHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHH-HHHcCCEEEEEE
Confidence 9998732 1 2 22 3678999999999999999987654321 1 12222333 445799988754
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.09 E-value=2.7e-10 Score=106.92 Aligned_cols=124 Identities=16% Similarity=0.140 Sum_probs=95.1
Q ss_pred CCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcC
Q 043503 275 GTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 275 ~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
...++|||||||+|.++..++++ +.+++..|+ +..++.+.....+.++.+|+.. +.+ .+|++++.+++++|.
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl---p~vi~~~~~~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~ 152 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR---PQVVENLSGSNNLTYVGGDMFT-SIP--NADAVLLKYILHNWT 152 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC---HHHHTTCCCBTTEEEEECCTTT-CCC--CCSEEEEESCGGGSC
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC---HHHHHhCcccCceEEEecCccc-CCC--CCcEEEEEeecccCC
Confidence 34567899999999999999998 678887754 5555555555669999999754 323 579999999998875
Q ss_pred CchhHHHHHHHHHHhccCC---cEEEEeeccccCcC------------------------cHHHHHHHHHHcCCEEEEEE
Q 043503 353 PDSMLEFTLYDIYRLLRPG---GIFWLDRFFCFGSQ------------------------LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPG---G~lvl~~f~~~~~~------------------------~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+ +....+|+++++.|+|| |++++.+++..+.. ..++|.++++++||+.++..
T Consensus 153 d-~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i~ 231 (244)
T d1fp2a2 153 D-KDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKIS 231 (244)
T ss_dssp H-HHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred h-HHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEEE
Confidence 4 46789999999999998 77777665432211 24679999999999988854
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=5.4e-10 Score=106.61 Aligned_cols=140 Identities=19% Similarity=0.212 Sum_probs=100.6
Q ss_pred ecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC--eeEEEc
Q 043503 256 IDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL--ISMHIS 327 (430)
Q Consensus 256 ~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~ 327 (430)
.++..++..++..+........ +|||+|||+|..+..++.. +.+|+++ |+++..++.|+++ +. +.++.+
T Consensus 89 IPRpeTE~lv~~~l~~~~~~~~-~vlDlGtGSG~I~i~la~~~p~~~v~av--Dis~~Al~~A~~Na~~~~~~~v~~~~~ 165 (274)
T d2b3ta1 89 IPRPDTECLVEQALARLPEQPC-RILDLGTGTGAIALALASERPDCEIIAV--DRMPDAVSLAQRNAQHLAIKNIHILQS 165 (274)
T ss_dssp CCCTTHHHHHHHHHHHSCSSCC-EEEEETCTTSHHHHHHHHHCTTSEEEEE--CSSHHHHHHHHHHHHHHTCCSEEEECC
T ss_pred ccccchhhhhhhHhhhhccccc-ceeeeehhhhHHHHHHHhhCCcceeeec--cchhHHHhHHHHHHHHhCcccceeeec
Confidence 4555666667777765554443 4699999999999999876 6788888 7778877777655 43 888888
Q ss_pred ccccCCCCCCceeEEEEccchhh------------cCCc----------hhHHHHHHHHHHhccCCcEEEEeeccccCcC
Q 043503 328 VSQRLPFFENTLDIVHSMHVLSN------------WIPD----------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ 385 (430)
Q Consensus 328 d~~~lpf~d~sfDlV~~~~~L~~------------~~~d----------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~ 385 (430)
|... ++++++||+|+|+..... +.|. .....++.++.+.|+|||.+++.. +..
T Consensus 166 d~~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi----g~~ 240 (274)
T d2b3ta1 166 DWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH----GWQ 240 (274)
T ss_dssp STTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC----CSS
T ss_pred cccc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE----Cch
Confidence 8644 345779999999744311 1111 134568899999999999999852 233
Q ss_pred cHHHHHHHHHHcCCEEEE
Q 043503 386 LNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 386 ~~~~~~~ll~~~Gfk~l~ 403 (430)
..+.+.+++.+.||..++
T Consensus 241 q~~~v~~~l~~~gf~~i~ 258 (274)
T d2b3ta1 241 QGEAVRQAFILAGYHDVE 258 (274)
T ss_dssp CHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHCCCCeEE
Confidence 457788999999997544
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.07 E-value=3.3e-10 Score=107.67 Aligned_cols=124 Identities=19% Similarity=0.256 Sum_probs=88.0
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLPF 334 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lpf 334 (430)
|-..+...|+.. |||+|||+|.++..+++. +.+|+++ |.++.+.+.|+++ |. +.+...|... .+
T Consensus 95 Ii~~l~i~pG~~---VLDiG~GsG~lt~~lA~~~~~~G~V~~v--D~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~ 168 (266)
T d1o54a_ 95 IAMMLDVKEGDR---IIDTGVGSGAMCAVLARAVGSSGKVFAY--EKREEFAKLAESNLTKWGLIERVTIKVRDISE-GF 168 (266)
T ss_dssp HHHHTTCCTTCE---EEEECCTTSHHHHHHHHHTTTTCEEEEE--CCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CC
T ss_pred HHHhhCCCCCCE---EEECCCCCCHHHHHHHHHhCCCcEEEEE--eCCHHHHHHHHHHHHHhccccCcEEEeccccc-cc
Confidence 334444555544 599999999999999986 4688988 7789988888765 43 6666666533 35
Q ss_pred CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+...||.|+. + .++ ...++.++.++|||||.+++.... -+......+.+++.||..++..
T Consensus 169 ~~~~~D~V~~-----d-~p~--p~~~l~~~~~~LKpGG~lv~~~P~---~~Qv~~~~~~l~~~gF~~i~~~ 228 (266)
T d1o54a_ 169 DEKDVDALFL-----D-VPD--PWNYIDKCWEALKGGGRFATVCPT---TNQVQETLKKLQELPFIRIEVW 228 (266)
T ss_dssp SCCSEEEEEE-----C-CSC--GGGTHHHHHHHEEEEEEEEEEESS---HHHHHHHHHHHHHSSEEEEEEE
T ss_pred cccceeeeEe-----c-CCC--HHHHHHHHHhhcCCCCEEEEEeCc---ccHHHHHHHHHHHCCceeEEEE
Confidence 6788999886 2 344 567899999999999999874322 1222445667788999866543
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=7.9e-11 Score=115.05 Aligned_cols=111 Identities=11% Similarity=0.157 Sum_probs=81.4
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhc---------------CCeeEEEc
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NV-TIITTSLNLDGPFNSFIASR---------------GLISMHIS 327 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~r---------------g~i~~~~~ 327 (430)
+++++.......-.+|||+|||+|.++..++.. ++ +++|+ |+++.+.+.|++. +.+.++++
T Consensus 140 ~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gi--d~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g 217 (328)
T d1nw3a_ 140 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGV--EKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 217 (328)
T ss_dssp HHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEE--ECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred HHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEE--eCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence 455555444444456799999999999999876 54 78888 6677777665432 34899999
Q ss_pred ccccCCCCCCce--eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 328 VSQRLPFFENTL--DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 328 d~~~lpf~d~sf--DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
|+...++.+..+ |+|+++... + .++ +...|.++.|+|||||.++....++
T Consensus 218 d~~~~~~~~~~~~advi~~~~~~-f-~~~--~~~~l~e~~r~LKpGg~iv~~~~~~ 269 (328)
T d1nw3a_ 218 DFLSEEWRERIANTSVIFVNNFA-F-GPE--VDHQLKERFANMKEGGRIVSSKPFA 269 (328)
T ss_dssp CTTSHHHHHHHHHCSEEEECCTT-T-CHH--HHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred cccccccccccCcceEEEEccee-c-chH--HHHHHHHHHHhCCCCcEEEEecccC
Confidence 999888766555 677764433 3 333 7889999999999999999876543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.06 E-value=2.2e-10 Score=107.15 Aligned_cols=134 Identities=15% Similarity=0.161 Sum_probs=98.5
Q ss_pred HHHHHccCCC-CCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeE
Q 043503 265 IDQVLSMKPL-GTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDI 341 (430)
Q Consensus 265 id~lL~~~p~-~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDl 341 (430)
.+.++...+. ...++|||||||+|.++..++++ +.+++..|+ +..++.+.....+.+..+|+.. +.|. .|+
T Consensus 69 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl---p~vi~~~~~~~r~~~~~~d~~~-~~P~--ad~ 142 (243)
T d1kyza2 69 MKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDL---PHVIEDAPSYPGVEHVGGDMFV-SIPK--ADA 142 (243)
T ss_dssp HHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC---TTTTTTCCCCTTEEEEECCTTT-CCCC--CSC
T ss_pred HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEccc---HHhhhhcccCCceEEecccccc-cCCC--cce
Confidence 4455555443 44678999999999999999998 778888865 3344545555668899998743 3333 477
Q ss_pred EEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc--------------------------CcHHHHHHHHH
Q 043503 342 VHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS--------------------------QLNETYVPMLD 395 (430)
Q Consensus 342 V~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~--------------------------~~~~~~~~ll~ 395 (430)
++..+++++|. ++....+|++++++|+|||.+++.+.+..+. ...++|.++++
T Consensus 143 ~~l~~vlh~~~-d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~ 221 (243)
T d1kyza2 143 VFMKWICHDWS-DEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAK 221 (243)
T ss_dssp EECSSSSTTSC-HHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHH
T ss_pred EEEEEEeecCC-HHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHH
Confidence 78889998775 4468899999999999999998876553211 12356889999
Q ss_pred HcCCEEEEEE
Q 043503 396 RIGFKKLRWN 405 (430)
Q Consensus 396 ~~Gfk~l~~~ 405 (430)
++||+.++..
T Consensus 222 ~AGf~~vkv~ 231 (243)
T d1kyza2 222 GAGFQGFKVH 231 (243)
T ss_dssp HHCCSCEEEE
T ss_pred HcCCCcEEEE
Confidence 9999988754
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.04 E-value=3.6e-10 Score=104.85 Aligned_cols=88 Identities=19% Similarity=0.240 Sum_probs=69.6
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCCCceeEEEEccchhhcCC
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~ 353 (430)
.+|||||||+|.+++.|++.+.+|+++ |.++.+.+.|+++ ..+.++.+|........++||.|++..+..+ ++
T Consensus 72 ~~VLdIG~GsGy~ta~La~l~~~V~ai--E~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~-ip 148 (224)
T d1vbfa_ 72 QKVLEIGTGIGYYTALIAEIVDKVVSV--EINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPT-LL 148 (224)
T ss_dssp CEEEEECCTTSHHHHHHHHHSSEEEEE--ESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSS-CC
T ss_pred ceEEEecCCCCHHHHHHHHHhcccccc--cccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhcchhh-hh
Confidence 456999999999999999998899988 5667877777655 4488899987654445678999999877743 44
Q ss_pred chhHHHHHHHHHHhccCCcEEEE
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
+ .+.+.|+|||++++
T Consensus 149 ~--------~l~~qLk~GGrLV~ 163 (224)
T d1vbfa_ 149 C--------KPYEQLKEGGIMIL 163 (224)
T ss_dssp H--------HHHHTEEEEEEEEE
T ss_pred H--------HHHHhcCCCCEEEE
Confidence 3 45578999999987
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.9e-09 Score=105.15 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=72.1
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc-----------------CCeeE
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR-----------------GLISM 324 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r-----------------g~i~~ 324 (430)
|-..+...|+.. |||+|||+|.++..|++. +.+|+++ |+++.+.+.|+++ ..+.+
T Consensus 90 Il~~l~i~pG~r---VLE~GtGsG~lt~~LAr~vg~~G~V~t~--E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~ 164 (324)
T d2b25a1 90 ILSMMDINPGDT---VLEAGSGSGGMSLFLSKAVGSQGRVISF--EVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF 164 (324)
T ss_dssp HHHHHTCCTTCE---EEEECCTTSHHHHHHHHHHCTTCEEEEE--ESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred HHHHhCCCCCCE---EEEecccccHHHHHHHHHhCCCcEEEEe--cCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeE
Confidence 344455666554 599999999999999986 4688888 6678888877654 23788
Q ss_pred EEcccccCC--CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 325 HISVSQRLP--FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 325 ~~~d~~~lp--f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
..+|..... +++..||.|+. . +++ ...++.++.++|||||.|++.
T Consensus 165 ~~~di~~~~~~~~~~~fD~V~L-D-----~p~--P~~~l~~~~~~LKpGG~lv~~ 211 (324)
T d2b25a1 165 IHKDISGATEDIKSLTFDAVAL-D-----MLN--PHVTLPVFYPHLKHGGVCAVY 211 (324)
T ss_dssp EESCTTCCC-------EEEEEE-C-----SSS--TTTTHHHHGGGEEEEEEEEEE
T ss_pred EecchhhcccccCCCCcceEee-c-----CcC--HHHHHHHHHHhccCCCEEEEE
Confidence 888876654 45778999987 2 232 335799999999999999873
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.85 E-value=3.4e-09 Score=106.19 Aligned_cols=112 Identities=10% Similarity=-0.006 Sum_probs=76.2
Q ss_pred HHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhc---------------CCeeE-E
Q 043503 264 GIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NV-TIITTSLNLDGPFNSFIASR---------------GLISM-H 325 (430)
Q Consensus 264 ~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~r---------------g~i~~-~ 325 (430)
.+.+++..+..+...++||+|||+|.++..++.. ++ +++|+ |+++.+++.|+++ +...+ .
T Consensus 204 ~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GI--DiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~ 281 (406)
T d1u2za_ 204 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGC--EIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 281 (406)
T ss_dssp HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEE--ECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEE--eCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence 4666766555444456799999999999999987 65 79988 7788888777643 11222 2
Q ss_pred EcccccCCCC---CCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 326 ISVSQRLPFF---ENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 326 ~~d~~~lpf~---d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
.++....++. -..+|+|+++... + .+ .+...|.++.|+|||||+++..+.++
T Consensus 282 ~~~f~~~~~~d~~~~~adVV~inn~~-f-~~--~l~~~L~ei~r~LKPGGrIVs~~~~~ 336 (406)
T d1u2za_ 282 KKSFVDNNRVAELIPQCDVILVNNFL-F-DE--DLNKKVEKILQTAKVGCKIISLKSLR 336 (406)
T ss_dssp SSCSTTCHHHHHHGGGCSEEEECCTT-C-CH--HHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred eechhhccccccccccceEEEEeccc-C-ch--HHHHHHHHHHHhcCCCcEEEEecccC
Confidence 2333222211 1347888885432 2 33 38899999999999999999876554
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.81 E-value=1.8e-08 Score=95.07 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=84.4
Q ss_pred cEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHh----cCC---eeEEEcccccCCCCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIAS----RGL---ISMHISVSQRLPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~----rg~---i~~~~~d~~~lpf~d~sfDlV~~~~~L~ 349 (430)
.+|||+|||+|.++..++.++ .+|+++ |+++.+.+.+++ +|+ +.++.+|+..++ ..+.||.|++...-
T Consensus 109 ~~VlD~~aG~G~~~l~~a~~~~~~V~av--d~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-~~~~~D~Ii~~~p~- 184 (260)
T d2frna1 109 ELVVDMFAGIGHLSLPIAVYGKAKVIAI--EKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGYVV- 184 (260)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCCEEEEE--CCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCCS-
T ss_pred cEEEECcceEcHHHHHHHHhCCcEEEEe--cCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-cCCCCCEEEECCCC-
Confidence 346999999999999999886 699988 556666655544 343 889999998776 45789999984221
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeeccccC---cCcHHHHHHHHHHcCCEEEE
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG---SQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~---~~~~~~~~~ll~~~Gfk~l~ 403 (430)
. ...++.++.++|+|||++.+..+.... ....+.+.+.....||++..
T Consensus 185 ----~--~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~ 235 (260)
T d2frna1 185 ----R--THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 235 (260)
T ss_dssp ----S--GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred ----c--hHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEE
Confidence 1 235778899999999998775554322 12345677788889998754
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.76 E-value=1.6e-08 Score=93.42 Aligned_cols=89 Identities=15% Similarity=0.192 Sum_probs=68.6
Q ss_pred cEEEEEcCCccHHHHHHHHc----C----CEEEEEecCCChhHHHHHHhc-----------CCeeEEEcccccCCCCCCc
Q 043503 278 RIGLDIGGGTGTFAARMRER----N----VTIITTSLNLDGPFNSFIASR-----------GLISMHISVSQRLPFFENT 338 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~----g----~~Vv~vdiD~s~~~le~a~~r-----------g~i~~~~~d~~~lpf~d~s 338 (430)
.+|||||||+|.+++.|++. | .+|+++ |.++.+.+.++++ ..+.+..+|......+.+.
T Consensus 82 ~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~i--E~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~ 159 (223)
T d1r18a_ 82 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGI--EHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAP 159 (223)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEE--ESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCS
T ss_pred CeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEE--ecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccccc
Confidence 45699999999999888876 3 378888 6667777776543 3588899998776667789
Q ss_pred eeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 339 LDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 339 fDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
||.|++.....+ +|+ .+.+.|+|||++++-
T Consensus 160 fD~Iiv~~a~~~-~p~--------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 160 YNAIHVGAAAPD-TPT--------ELINQLASGGRLIVP 189 (223)
T ss_dssp EEEEEECSCBSS-CCH--------HHHHTEEEEEEEEEE
T ss_pred eeeEEEEeechh-chH--------HHHHhcCCCcEEEEE
Confidence 999999877743 443 456899999999873
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.74 E-value=1.4e-08 Score=93.32 Aligned_cols=97 Identities=19% Similarity=0.245 Sum_probs=72.9
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----CC--eeEEEcccccCCCCCCc
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQRLPFFENT 338 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~lpf~d~s 338 (430)
-+.+...++.+ |||||||+|..++.|+.. |.+|+++ |.++.+.+.++++ |. +.++.+|........+.
T Consensus 71 l~~L~l~~g~~---VLeIGsGsGY~taila~l~g~~V~~i--e~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 71 LEIANLKPGMN---ILEVGTGSGWNAALISEIVKTDVYTI--ERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHHHTCCTTCC---EEEECCTTSHHHHHHHHHHCSCEEEE--ESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHhhccCccce---EEEecCCCChhHHHHHHhhCceeEEE--eccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence 34455556554 599999999999999987 7778888 5557777766654 43 88899998765556789
Q ss_pred eeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 339 LDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 339 fDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
||.|++.....+ +|+ .+...|+|||++++
T Consensus 146 fD~Iiv~~a~~~-ip~--------~l~~qL~~gGrLv~ 174 (215)
T d1jg1a_ 146 YDVIIVTAGAPK-IPE--------PLIEQLKIGGKLII 174 (215)
T ss_dssp EEEEEECSBBSS-CCH--------HHHHTEEEEEEEEE
T ss_pred ceeEEeeccccc-CCH--------HHHHhcCCCCEEEE
Confidence 999999877743 554 34567999999986
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.72 E-value=3.1e-08 Score=89.15 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=65.9
Q ss_pred EEEEEcCCccH----HHHHHHHc------CCEEEEEecCCChhHHHHHHhc--------CC-------------------
Q 043503 279 IGLDIGGGTGT----FAARMRER------NVTIITTSLNLDGPFNSFIASR--------GL------------------- 321 (430)
Q Consensus 279 ~VLDIGcGtG~----~a~~La~~------g~~Vv~vdiD~s~~~le~a~~r--------g~------------------- 321 (430)
+|+++|||+|. ++..+.+. .++|+++ |+++.+++.|++. +.
T Consensus 27 rIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~at--Di~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~ 104 (193)
T d1af7a2 27 RVWSAAASTGEEPYSIAITLADALGMAPGRWKVFAS--DIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 104 (193)
T ss_dssp EEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEE--ESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred EEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEee--cCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence 45999999995 45545443 2467888 6667778777532 00
Q ss_pred ----------eeEEEcccc-cCCCCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 322 ----------ISMHISVSQ-RLPFFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 322 ----------i~~~~~d~~-~lpf~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+.+...+.. ..+.+.+.||+|+|.+++.. .++.....++..++++|+|||+|++.
T Consensus 105 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiY-f~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 105 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIY-FDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGG-SCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHh-cCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 122222221 12234578999999999965 55556789999999999999999885
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.71 E-value=1.6e-08 Score=97.95 Aligned_cols=119 Identities=13% Similarity=0.048 Sum_probs=81.4
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC--eeEEEccccc----CCCCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL--ISMHISVSQR----LPFFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~--i~~~~~d~~~----lpf~d~sfDlV~~~~~ 347 (430)
++|||++||+|.++..++..+.+|+++ |.++.+++.++++ |+ +.++.+|... ++...++||+|++...
T Consensus 147 ~rVLDl~~gtG~~s~~~a~g~~~V~~v--D~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP 224 (318)
T d1wxxa2 147 ERALDVFSYAGGFALHLALGFREVVAV--DSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 224 (318)
T ss_dssp EEEEEETCTTTHHHHHHHHHEEEEEEE--ESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CeeeccCCCCcHHHHHHHhcCCcEEee--cchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCC
Confidence 567999999999999998777888888 6678888777654 54 7888888644 3345678999998532
Q ss_pred hhhcCCc------hhHHHHHHHHHHhccCCcEEEEeeccccCcC----cHHHHHHHHHHcCCE
Q 043503 348 LSNWIPD------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ----LNETYVPMLDRIGFK 400 (430)
Q Consensus 348 L~~~~~d------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~----~~~~~~~ll~~~Gfk 400 (430)
-..-... .....++..+.++|+|||.++++. |...- +.+.+.+.+...|-+
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~s--cs~~~~~~~f~~~v~~a~~~a~~~ 285 (318)
T d1wxxa2 225 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS--CSHHMTEPLFYAMVAEAAQDAHRL 285 (318)
T ss_dssp CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE--CCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe--CCcccCHHHHHHHHHHHHHHcCCC
Confidence 1110111 123467889999999999998864 33222 233455556667743
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.65 E-value=2.6e-08 Score=86.15 Aligned_cols=95 Identities=14% Similarity=0.166 Sum_probs=68.3
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----CC---eeEEEccccc-CCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----GL---ISMHISVSQR-LPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~-lpf~d~sfDlV~~~~~L 348 (430)
.+|||+|||+|.++..++.+|+ +|+++ |.+..+.+.++++ +. +.++.+|+.. ++...++||+|++....
T Consensus 16 ~~vlDl~~GtG~~~iea~~rga~~v~~v--e~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy 93 (152)
T d2esra1 16 GRVLDLFAGSGGLAIEAVSRGMSAAVLV--EKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 93 (152)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCCEEEEE--CCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CeEEEcCCccCHHHHHHHHhCcceeeee--hhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence 4569999999999999999976 78887 6667776655544 33 7888888765 34567899999996443
Q ss_pred hhcCCchhHHHHHHHH--HHhccCCcEEEEee
Q 043503 349 SNWIPDSMLEFTLYDI--YRLLRPGGIFWLDR 378 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei--~RvLrPGG~lvl~~ 378 (430)
.. ......+..+ .+.|+|||.+++.+
T Consensus 94 ~~----~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 94 AK----ETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp HH----HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cc----chHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 21 1234455544 35799999999864
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.62 E-value=5.4e-08 Score=94.39 Aligned_cols=119 Identities=15% Similarity=0.075 Sum_probs=79.6
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----CC---eeEEEccccc----CCCCCCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----GL---ISMHISVSQR----LPFFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~----lpf~d~sfDlV~~~ 345 (430)
.+|||+|||+|.++..++..|+ +|+++ |.++.+++.++++ |. +.++++|+.. ++....+||+|++.
T Consensus 147 ~~VLDl~~g~G~~si~~a~~ga~~V~~v--D~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~D 224 (324)
T d2as0a2 147 DRVLDVFTYTGGFAIHAAIAGADEVIGI--DKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 224 (324)
T ss_dssp CEEEETTCTTTHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeeecccCcccchhhhhhhcCCcEEEee--cCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcC
Confidence 3569999999999999999875 78888 6677777766544 54 6888888643 33456799999995
Q ss_pred cchhhcCCc------hhHHHHHHHHHHhccCCcEEEEeeccccCcC----cHHHHHHHHHHcCCE
Q 043503 346 HVLSNWIPD------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ----LNETYVPMLDRIGFK 400 (430)
Q Consensus 346 ~~L~~~~~d------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~----~~~~~~~ll~~~Gfk 400 (430)
.....-... .....++..+.++|+|||.++++. |...- +.+.+.+.+.+.|-+
T Consensus 225 pP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s--~s~~~~~~~f~~~v~~a~~~~gr~ 287 (324)
T d2as0a2 225 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS--CSQHVDLQMFKDMIIAAGAKAGKF 287 (324)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE--CCTTSCHHHHHHHHHHHHHHTTEE
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe--CCccCCHHHHHHHHHHHHHHcCCe
Confidence 332110000 123457888899999999999864 32222 223444555666633
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.53 E-value=9.7e-08 Score=87.32 Aligned_cols=111 Identities=23% Similarity=0.359 Sum_probs=77.3
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC---eeEEEccccc-CC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQR-LP 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~-lp 333 (430)
+..++..... ++|||+|||+|..+..|++. +.+|+++ |.++.+.+.|+++ |. +.++.+++.. ++
T Consensus 48 L~~lv~~~kp---k~ILEiGt~~G~Sti~la~al~~~g~v~si--d~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~ 122 (214)
T d2cl5a1 48 MDAVIREYSP---SLVLELGAYCGYSAVRMARLLQPGARLLTM--EMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIP 122 (214)
T ss_dssp HHHHHHHHCC---SEEEEECCTTSHHHHHHHTTCCTTCEEEEE--ESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGG
T ss_pred HHHHHHhhCC---CEEEEEccCchhHHHHHHHhCCCccEEEEE--eccHHHHHHHHHHHHHcCCCccceeeecccccccc
Confidence 4444444443 45699999999999999975 6899988 4556666666433 54 8999998644 22
Q ss_pred -----CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCc
Q 043503 334 -----FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGS 384 (430)
Q Consensus 334 -----f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~ 384 (430)
+..++||+|+.-..- ........+.+..+.|||||++++++.+..+.
T Consensus 123 ~l~~~~~~~~~D~ifiD~~~----~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~ 174 (214)
T d2cl5a1 123 QLKKKYDVDTLDMVFLDHWK----DRYLPDTLLLEKCGLLRKGTVLLADNVIVPGT 174 (214)
T ss_dssp GHHHHSCCCCEEEEEECSCG----GGHHHHHHHHHHTTCEEEEEEEEESCCCCCCC
T ss_pred chhhcccccccceeeecccc----cccccHHHHHHHhCccCCCcEEEEeCcCCCCC
Confidence 445789999984322 11113346778889999999999988765543
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.53 E-value=2.1e-07 Score=84.13 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=54.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc-CCeeEEEcccccCCCCCCceeEEEEccch
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR-GLISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r-g~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
++|||+|||+|.++..++.+|. .|+++ |+++.+++.|+++ ..+.+..+|+..++ +.||+|+++-.+
T Consensus 50 k~VLDlGcGtG~l~i~a~~~ga~~V~~v--Did~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 50 RSVIDAGTGNGILACGSYLLGAESVTAF--DIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPF 117 (197)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBSEEEEE--ESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC
T ss_pred CEEEEeCCCCcHHHHHHHHcCCCccccc--ccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeCccc
Confidence 4569999999999999888874 69988 5567888888877 33899999988765 789999997655
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.50 E-value=1.1e-07 Score=85.80 Aligned_cols=126 Identities=17% Similarity=0.144 Sum_probs=86.6
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-----CCeeEEEcccccCC-----
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-----GLISMHISVSQRLP----- 333 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-----g~i~~~~~d~~~lp----- 333 (430)
++++..+....-.++||++||+|..+..++++ +.+|+++ |.++.|++.++++ ..+.++.+++..+.
T Consensus 13 ~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~--D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~ 90 (192)
T d1m6ya2 13 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGI--DVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 90 (192)
T ss_dssp HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEE--ESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEe--echHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence 34443333333345699999999999999987 6789988 5668899988875 34888888776643
Q ss_pred CCCCceeEEEEccchhhcC------CchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHH
Q 043503 334 FFENTLDIVHSMHVLSNWI------PDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDR 396 (430)
Q Consensus 334 f~d~sfDlV~~~~~L~~~~------~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~ 396 (430)
+..++||.|+.-..+..+. .-......|..+.++|+|||.+++..|...+. +.+...+.+
T Consensus 91 ~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Ed---r~vk~~f~~ 156 (192)
T d1m6ya2 91 LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLED---RIVKETFRN 156 (192)
T ss_dssp TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHH---HHHHHHHHH
T ss_pred cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHH---HHHHHHHhh
Confidence 4467899998753331110 01235678999999999999999887664332 334555554
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.49 E-value=1.6e-07 Score=82.73 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=63.4
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC-eeEEEccccc----CCCCCCceeEEEEccchh
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQR----LPFFENTLDIVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~----lpf~d~sfDlV~~~~~L~ 349 (430)
+|||+|||+|.++..++.+|++++++ |.++.+++.++++ +. ..+...+... ......+||+|++...+.
T Consensus 44 ~vLDl~~G~G~~~i~a~~~ga~vv~v--D~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY~ 121 (171)
T d1ws6a1 44 RFLDPFAGSGAVGLEAASEGWEAVLV--EKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA 121 (171)
T ss_dssp EEEEETCSSCHHHHHHHHTTCEEEEE--CCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred eEEEeccccchhhhhhhhccchhhhc--ccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEccccc
Confidence 46999999999999999999999987 7778777766544 44 3444444322 124467899999965542
Q ss_pred hcCCchhHHHHHHHH--HHhccCCcEEEEee
Q 043503 350 NWIPDSMLEFTLYDI--YRLLRPGGIFWLDR 378 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei--~RvLrPGG~lvl~~ 378 (430)
. . ....+.++ ...|+|||++++.+
T Consensus 122 ~-~----~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 122 M-D----LAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp S-C----TTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred c-C----HHHHHHHHHHcCCcCCCeEEEEEe
Confidence 1 1 12223333 35799999998864
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.47 E-value=1.5e-07 Score=89.27 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=90.6
Q ss_pred eecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhc----CC---eeEEE
Q 043503 255 LIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASR----GL---ISMHI 326 (430)
Q Consensus 255 ~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~ 326 (430)
..++..++..++..+.........+++|+|||+|..+..+++. +.+|+++ |+++..++.|+++ +. +.++.
T Consensus 89 lIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~--Dis~~Al~~A~~Na~~~~~~~~~~i~~ 166 (271)
T d1nv8a_ 89 FVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFAT--DVSSKAVEIARKNAERHGVSDRFFVRK 166 (271)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEE--ESCHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred cCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeec--hhhhhHHHHHHHHHHHcCCCceeEEee
Confidence 3456666666776665444334456799999999999888876 7899988 6677777766654 43 66677
Q ss_pred ccccc-CCCCCCceeEEEEccchhh----------cCC-------chhHHHHHHHHHHhccCCcEEEEeeccccCcCcHH
Q 043503 327 SVSQR-LPFFENTLDIVHSMHVLSN----------WIP-------DSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNE 388 (430)
Q Consensus 327 ~d~~~-lpf~d~sfDlV~~~~~L~~----------~~~-------d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~ 388 (430)
++... ++...++||+|+++..... |-| ++.+..+-+-+.+.|+|||++++.. +....+
T Consensus 167 ~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei----g~~Q~~ 242 (271)
T d1nv8a_ 167 GEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI----GEDQVE 242 (271)
T ss_dssp SSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC----CTTCHH
T ss_pred cccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE----CHHHHH
Confidence 76543 3334478999999643210 000 1113333333678899999998853 233446
Q ss_pred HHHHHHHHcCC
Q 043503 389 TYVPMLDRIGF 399 (430)
Q Consensus 389 ~~~~ll~~~Gf 399 (430)
.+.+++.+.||
T Consensus 243 ~v~~l~~~~g~ 253 (271)
T d1nv8a_ 243 ELKKIVSDTVF 253 (271)
T ss_dssp HHTTTSTTCEE
T ss_pred HHHHHHHhCCE
Confidence 67777888877
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.46 E-value=7.4e-07 Score=80.41 Aligned_cols=116 Identities=12% Similarity=0.101 Sum_probs=75.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCCCceeEEEEccchhhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~ 351 (430)
.+|||+|||+|.++..++.+|. .|+++ |+++.+++.++++ +. ..++.+|...+ ++.||+|+++......
T Consensus 48 ~~vLDlg~GtG~l~i~a~~~g~~~v~~v--di~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~~~~ 122 (201)
T d1wy7a1 48 KVVADLGAGTGVLSYGALLLGAKEVICV--EVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPFGSQ 122 (201)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCCSSS
T ss_pred CEEEECcCcchHHHHHHHHcCCCEEEEE--cCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCccccc
Confidence 4579999999999999998875 88988 5567777777765 33 77888887665 4679999997665322
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEE
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRW 404 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~ 404 (430)
...... .++. +.+.+++.++..+... ......+..+....|+.....
T Consensus 123 ~~~~d~-~~l~---~~~~~~~~v~~ih~~~--~~~~~~i~~~~~~~g~~i~~~ 169 (201)
T d1wy7a1 123 RKHADR-PFLL---KAFEISDVVYSIHLAK--PEVRRFIEKFSWEHGFVVTHR 169 (201)
T ss_dssp STTTTH-HHHH---HHHHHCSEEEEEEECC--HHHHHHHHHHHHHTTEEEEEE
T ss_pred cccccH-HHHH---HHHhhcccchhcccch--HHHHHHHHHHHhhcCceEEEE
Confidence 211112 2232 3444566666554331 112234566777888876544
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=1.3e-06 Score=81.42 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=81.8
Q ss_pred ccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----CC---eeEEEcccccCC------CCCCceeE
Q 043503 277 IRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQRLP------FFENTLDI 341 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~lp------f~d~sfDl 341 (430)
..++||+|||+|..+..++.+ +.+++++ |+++.+++.|+++ ++ +.++..+....- ..+++||+
T Consensus 62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~--Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 62 LRRGIDIGTGASCIYPLLGATLNGWYFLAT--EVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEE--ESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cceEEEeCCCchHHHHHHHHhCCCccccce--ecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 346799999999999999887 8899999 6667778777655 33 666665432211 23568999
Q ss_pred EEEccchhhcCCc--------------------------------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHH
Q 043503 342 VHSMHVLSNWIPD--------------------------------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNET 389 (430)
Q Consensus 342 V~~~~~L~~~~~d--------------------------------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~ 389 (430)
|+|+..+..-... .....++.+..+.++..|++... +. ..+..+.
T Consensus 140 ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~--ig-~~~~l~~ 216 (250)
T d2h00a1 140 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCM--LG-KKCSLAP 216 (250)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEE--ES-STTSHHH
T ss_pred EEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEE--ec-chhhHHH
Confidence 9997665321000 02445677778889998877542 11 1233466
Q ss_pred HHHHHHHcCCEEEEE
Q 043503 390 YVPMLDRIGFKKLRW 404 (430)
Q Consensus 390 ~~~ll~~~Gfk~l~~ 404 (430)
+...+.+.|++.++.
T Consensus 217 i~~~L~~~g~~~i~~ 231 (250)
T d2h00a1 217 LKEELRIQGVPKVTY 231 (250)
T ss_dssp HHHHHHHTTCSEEEE
T ss_pred HHHHHHHcCCCeEEE
Confidence 788899999976543
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.41 E-value=6.1e-07 Score=86.38 Aligned_cols=122 Identities=14% Similarity=0.085 Sum_probs=80.9
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CC----eeEEEcccccC----CCCCCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GL----ISMHISVSQRL----PFFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~----i~~~~~d~~~l----pf~d~sfDlV~~~ 345 (430)
++|||++||+|.++..++..|++|+++ |.++.+++.|+++ |. +.++++|+.++ ....+.||+|++.
T Consensus 134 ~rVLdlf~~tG~~sl~aa~~GA~V~~V--D~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilD 211 (309)
T d2igta1 134 LKVLNLFGYTGVASLVAAAAGAEVTHV--DASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD 211 (309)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEEE--CSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred CeEEEecCCCcHHHHHHHhCCCeEEEE--eChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEEC
Confidence 456999999999999999999999887 8888888887764 33 78899986543 1235789999984
Q ss_pred cch-h------hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcC---cHHHHHHHHHHcCCEE
Q 043503 346 HVL-S------NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ---LNETYVPMLDRIGFKK 401 (430)
Q Consensus 346 ~~L-~------~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~---~~~~~~~ll~~~Gfk~ 401 (430)
..- . .|.-......++..+.++|+|||.+++....+..-. ..+.+.+.+...|-.+
T Consensus 212 PP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~v 277 (309)
T d2igta1 212 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVV 277 (309)
T ss_dssp CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEE
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcc
Confidence 221 0 111112355677788899999998776653332221 1223344454566444
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.41 E-value=2.7e-07 Score=89.27 Aligned_cols=124 Identities=9% Similarity=0.000 Sum_probs=80.6
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHh----cCC----eeEEEcccccC----CCCCCceeEEEE
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIAS----RGL----ISMHISVSQRL----PFFENTLDIVHS 344 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~----rg~----i~~~~~d~~~l----pf~d~sfDlV~~ 344 (430)
++|||+.||+|.++..++..|+ .|+++|+ ++.+++.+++ +|+ +.++.+|+... .-..++||+|++
T Consensus 146 ~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~--s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~ 223 (317)
T d2b78a2 146 KTVLNLFSYTAAFSVAAAMGGAMATTSVDL--AKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 223 (317)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBSEEEEEES--CTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CceeecCCCCcHHHHHHHhCCCceEEEecC--CHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence 4569999999999999888876 6888854 5555555543 343 78889886432 224568999999
Q ss_pred ccch-hh---cCCc--hhHHHHHHHHHHhccCCcEEEEeeccccCcC----cHHHHHHHHHHcCCEEEEEE
Q 043503 345 MHVL-SN---WIPD--SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQ----LNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 345 ~~~L-~~---~~~d--~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~----~~~~~~~ll~~~Gfk~l~~~ 405 (430)
...- .. -... .....++..+.++|+|||.++++. |...- +...+.+.+.+.|.......
T Consensus 224 DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s--cs~~~~~~~f~~~v~~a~~~~~~~~~~~~ 292 (317)
T d2b78a2 224 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST--NAANMTVSQFKKQIEKGFGKQKHTYLDLQ 292 (317)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE--CCTTSCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred cChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe--CCccCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4221 00 0001 124568889999999999999864 33222 22344555666777766543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=8.1e-07 Score=81.41 Aligned_cols=108 Identities=19% Similarity=0.176 Sum_probs=77.2
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhc----CC---eeEEEccccc-CC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASR----GL---ISMHISVSQR-LP 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~r----g~---i~~~~~d~~~-lp 333 (430)
+..+...... ++|||||||+|.-+..+++. +.+++++|. ++...+.|++. |. +.++.+++.. ++
T Consensus 51 L~~L~~~~~~---k~vLEiGt~~GyStl~~a~al~~~g~i~tie~--~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~ 125 (219)
T d2avda1 51 LANLARLIQA---KKALDLGTFTGYSALALALALPADGRVVTCEV--DAQPPELGRPLWRQAEAEHKIDLRLKPALETLD 125 (219)
T ss_dssp HHHHHHHTTC---CEEEEECCTTSHHHHHHHTTSCTTCEEEEEES--CSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred HHHHHHccCC---CeEEEEechhhHHHHHHHHhCCCCceEEEEee--chhHHHHHHHHHHhcCccceEEEEEeehhhcch
Confidence 4444444443 45699999999999999986 679998855 45555555433 43 8889988633 22
Q ss_pred -----CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 334 -----FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 334 -----f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
..+++||+|+.. +.-. ....++..+.+.|+|||.+++++.+..+
T Consensus 126 ~~~~~~~~~~fD~ifiD----~dk~--~y~~~~~~~~~lL~~GGvii~Dn~l~~G 174 (219)
T d2avda1 126 ELLAAGEAGTFDVAVVD----ADKE--NCSAYYERCLQLLRPGGILAVLRVLWRG 174 (219)
T ss_dssp HHHHTTCTTCEEEEEEC----SCST--THHHHHHHHHHHEEEEEEEEEECCSGGG
T ss_pred hhhhhcccCCccEEEEe----CCHH--HHHHHHHHHHHHhcCCcEEEEeCCcccC
Confidence 236789999994 2112 3567889999999999999999877644
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.22 E-value=2.2e-06 Score=75.98 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=67.7
Q ss_pred EEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C--CeeEEEccccc-CCCCCCceeEEEEccchhh
Q 043503 279 IGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G--LISMHISVSQR-LPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g--~i~~~~~d~~~-lpf~d~sfDlV~~~~~L~~ 350 (430)
+|||++||+|.++..++.+|+ .|+.+ |.+....+.++++ + .+.++..|+.. +...+.+||+|++......
T Consensus 46 ~vLDlfaGsG~~giealsrGa~~v~~V--E~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~~ 123 (183)
T d2fpoa1 46 QCLDCFAGSGALGLEALSRYAAGATLI--EMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFRR 123 (183)
T ss_dssp EEEETTCTTCHHHHHHHHTTCSEEEEE--CSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSST
T ss_pred hhhhhhccccceeeeEEecCcceeEEE--EEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcccc
Confidence 469999999999999999987 67777 6667766655543 2 36777777543 3445778999999755422
Q ss_pred cCCchhHHHHHHHHHH--hccCCcEEEEee
Q 043503 351 WIPDSMLEFTLYDIYR--LLRPGGIFWLDR 378 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~R--vLrPGG~lvl~~ 378 (430)
......+..+.+ .|+|+|.+++.+
T Consensus 124 ----~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 124 ----GLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp ----TTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ----chHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 125556666654 699999999864
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.11 E-value=1e-05 Score=78.17 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=91.4
Q ss_pred hHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHh----cCC--eeEEEccccc-CC-
Q 043503 262 DYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIAS----RGL--ISMHISVSQR-LP- 333 (430)
Q Consensus 262 ~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~----rg~--i~~~~~d~~~-lp- 333 (430)
...++.+++........+|||+-||+|.|+..|++++.+|+++ |.++.+++.|++ +|. +.++.++.+. ++
T Consensus 198 e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gv--E~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~ 275 (358)
T d1uwva2 198 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGV--EGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 275 (358)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEE--ESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS
T ss_pred hHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEec--cCcHHHHHHHHHhHHhcccccceeeecchhhhhhh
Confidence 3345555554444444567999999999999999999999999 555666665554 354 7888887654 22
Q ss_pred --CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEE-eccc
Q 043503 334 --FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWN-VGMK 409 (430)
Q Consensus 334 --f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~-~~~k 409 (430)
.....+|+|+....- ..+...+..+.+ ++|.-.+|++ |+...+.+++.. +.+.||++.+.. +++.
T Consensus 276 ~~~~~~~~d~vilDPPR------~G~~~~~~~l~~-~~~~~ivYVS---Cnp~TlaRDl~~-l~~~gy~l~~i~~~D~F 343 (358)
T d1uwva2 276 QPWAKNGFDKVLLDPAR------AGAAGVMQQIIK-LEPIRIVYVS---CNPATLARDSEA-LLKAGYTIARLAMLDMF 343 (358)
T ss_dssp SGGGTTCCSEEEECCCT------TCCHHHHHHHHH-HCCSEEEEEE---SCHHHHHHHHHH-HHHTTCEEEEEEEECCS
T ss_pred hhhhhccCceEEeCCCC------ccHHHHHHHHHH-cCCCEEEEEe---CCHHHHHHHHHH-HHHCCCeEeEEEEEecC
Confidence 335679999884332 223456666665 4788788886 776666677654 556899988876 4443
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.06 E-value=5e-06 Score=76.40 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=76.2
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHh----cCC---eeEEEccccc-CC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIAS----RGL---ISMHISVSQR-LP 333 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~----rg~---i~~~~~d~~~-lp 333 (430)
+..+...... ++||++|+++|.-+..|++. +.++++++.| +...+.|++ .|. +.++.+++.. ++
T Consensus 51 L~~L~~~~~~---k~iLEiGT~~GyStl~la~al~~~g~v~tie~~--~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~ 125 (227)
T d1susa1 51 LSMLLKLINA---KNTMEIGVYTGYSLLATALAIPEDGKILAMDIN--KENYELGLPVIKKAGVDHKIDFREGPALPVLD 125 (227)
T ss_dssp HHHHHHHHTC---CEEEEECCGGGHHHHHHHHHSCTTCEEEEEESC--CHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred HHHHHHhcCC---CcEEEecchhhhhHHHHHhhCCCCcEEEEEecc--chhHHHHHHHHHHhccccceeeeehHHHHHHH
Confidence 4444444443 45699999999999999975 6799988555 444444443 354 8889887643 22
Q ss_pred ------CCCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 334 ------FFENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 334 ------f~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
..+++||+|+.- ++.. ....++..+.+.|+|||.++++..+..+
T Consensus 126 ~l~~~~~~~~~fD~iFiD----a~k~--~y~~~~e~~~~ll~~gGiii~DNvl~~G 175 (227)
T d1susa1 126 EMIKDEKNHGSYDFIFVD----ADKD--NYLNYHKRLIDLVKVGGVIGYDNTLWNG 175 (227)
T ss_dssp HHHHCGGGTTCBSEEEEC----SCST--THHHHHHHHHHHBCTTCCEEEETTTGGG
T ss_pred HHHhccccCCceeEEEec----cchh--hhHHHHHHHHhhcCCCcEEEEccCCCCC
Confidence 135689999993 2222 2667899999999999999999876543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.05 E-value=4e-06 Score=74.34 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=68.2
Q ss_pred cEEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----C---CeeEEEcccccC-C---CCCCceeEEEEc
Q 043503 278 RIGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----G---LISMHISVSQRL-P---FFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g---~i~~~~~d~~~l-p---f~d~sfDlV~~~ 345 (430)
.+|||++||+|.++..++.+|+ .|+.+ |.+..+.+.++++ + .+.++.+|+.++ . -...+||+|++.
T Consensus 43 ~~vLDlfaGsG~~g~ea~srGa~~v~~v--e~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflD 120 (182)
T d2fhpa1 43 GMALDLYSGSGGLAIEAVSRGMDKSICI--EKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 120 (182)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CEEEEcccccccccceeeecchhHHHHH--HHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEec
Confidence 4569999999999999999987 57777 5567666666544 3 378888886542 1 235689999996
Q ss_pred cchhhcCCchhHHHHHHHHHH--hccCCcEEEEee
Q 043503 346 HVLSNWIPDSMLEFTLYDIYR--LLRPGGIFWLDR 378 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~R--vLrPGG~lvl~~ 378 (430)
..... . .....+..+.. .|+|||++++.+
T Consensus 121 PPY~~--~--~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 121 PPYAK--Q--EIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp CCGGG--C--CHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhhhh--h--HHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 55421 2 25566777654 699999998854
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.94 E-value=2.6e-05 Score=74.78 Aligned_cols=125 Identities=13% Similarity=0.066 Sum_probs=80.4
Q ss_pred CccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc-----------CCeeEEEcccccC-CCCCCceeE
Q 043503 276 TIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR-----------GLISMHISVSQRL-PFFENTLDI 341 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r-----------g~i~~~~~d~~~l-pf~d~sfDl 341 (430)
..++||.||+|.|..+..+.+. ..+|+.+ |+++.+++.+++. ..+.++.+|+..+ .-.+++||+
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~V--EiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMV--DIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEE--ESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEe--cCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 4567799999999999999877 4578888 5557777777643 2378899987553 234578999
Q ss_pred EEEccchhhcCCc-----hhHHHHHHHHHHhccCCcEEEEee--ccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 342 VHSMHVLSNWIPD-----SMLEFTLYDIYRLLRPGGIFWLDR--FFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 342 V~~~~~L~~~~~d-----~~l~~~L~ei~RvLrPGG~lvl~~--f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
|+.-. ...+..+ -....+++.+.+.|+|||.+++-. +.....+....+.+.+.+..-.+..
T Consensus 155 Ii~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~ 222 (312)
T d1uira_ 155 VIIDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRS 222 (312)
T ss_dssp EEEEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEE
T ss_pred EEEeC-CCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEE
Confidence 99732 1111111 013578999999999999987632 2222233445555666665333333
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.92 E-value=2.2e-05 Score=69.61 Aligned_cols=121 Identities=17% Similarity=0.130 Sum_probs=86.5
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc--CCeeEEEcccccCC-----CCCCceeEEEEccchhh
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR--GLISMHISVSQRLP-----FFENTLDIVHSMHVLSN 350 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r--g~i~~~~~d~~~lp-----f~d~sfDlV~~~~~L~~ 350 (430)
.+++|..+|.|..+..+.+++.+|+++|.| +.+++.++.+ ..+.++.+.+..+. +..+.+|.|+.-..+..
T Consensus 20 ~~~vD~T~G~GGhs~~iL~~~~~viaiD~D--~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DLGvSs 97 (182)
T d1wg8a2 20 GVYVDATLGGAGHARGILERGGRVIGLDQD--PEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSS 97 (182)
T ss_dssp CEEEETTCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEECSCCH
T ss_pred CEEEEeCCCCcHHHHHHhcccCcEEEEhhh--hhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEEccCCH
Confidence 456999999999999999998899999554 6777777764 33788888765543 34567999998543322
Q ss_pred cC-C---c--hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 351 WI-P---D--SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 351 ~~-~---d--~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
+. + + ..+...|.....+|+|||.+.+..|...+ .+.+...+++.+++.+.
T Consensus 98 ~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~E---d~ivk~~~~e~~~k~i~ 153 (182)
T d1wg8a2 98 FHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLE---DRVVKRFLRESGLKVLT 153 (182)
T ss_dssp HHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHH---HHHHHHHHHHHCSEESC
T ss_pred HHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccch---hHHHHHHHhhccceecc
Confidence 11 0 0 12455788889999999999988776432 24567778888887654
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.89 E-value=1.7e-05 Score=75.71 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=64.5
Q ss_pred CccEEEEEcCCccHHHHHHHHc-------CCEEEEEecCCChhHHHHHHhc----CC-eeEEEcccccCCCCCCceeEEE
Q 043503 276 TIRIGLDIGGGTGTFAARMRER-------NVTIITTSLNLDGPFNSFIASR----GL-ISMHISVSQRLPFFENTLDIVH 343 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~-------g~~Vv~vdiD~s~~~le~a~~r----g~-i~~~~~d~~~lpf~d~sfDlV~ 343 (430)
...+|||.|||+|.+...+.++ ..+++|+ |+++.+...|+.+ +. ..+..+|.... .+..+||+|+
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~--di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~vi 193 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGV--DVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVI 193 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEE--ESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEe--cccHHHHHHHHHHHHHhhhhhhhhccccccc-cccccccccc
Confidence 3345799999999999888653 2356777 5556666665533 32 55666664332 3467899999
Q ss_pred EccchhhcCCc---------------hhHHHHHHHHHHhccCCcEEEEe
Q 043503 344 SMHVLSNWIPD---------------SMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 344 ~~~~L~~~~~d---------------~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
++..+...... ..-..++..+.+.|+|||++.+.
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I 242 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL 242 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEE
Confidence 98665322111 01223688899999999987553
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.87 E-value=2.5e-05 Score=71.91 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=62.1
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCCCcee
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFENTLD 340 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d~sfD 340 (430)
+++++.........+|||||||+|.++..|++.+.+|+++ +++..+.+..+++ ..+.++.+|+-.++++.....
T Consensus 10 ~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~av--E~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~ 87 (235)
T d1qama_ 10 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAI--EIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY 87 (235)
T ss_dssp HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEE--CSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC
T ss_pred HHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEE--eeccchHHHHHHHhhcccchhhhhhhhhhccccccccc
Confidence 5566665554555678999999999999999999999998 5557787777765 348899999988887665555
Q ss_pred EEEEccch
Q 043503 341 IVHSMHVL 348 (430)
Q Consensus 341 lV~~~~~L 348 (430)
.|+++-..
T Consensus 88 ~vv~NLPY 95 (235)
T d1qama_ 88 KIFGNIPY 95 (235)
T ss_dssp EEEEECCG
T ss_pred eeeeeehh
Confidence 66665333
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=3.1e-05 Score=68.44 Aligned_cols=134 Identities=18% Similarity=0.182 Sum_probs=80.8
Q ss_pred cEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC--------CCCCceeEEEEcc
Q 043503 278 RIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP--------FFENTLDIVHSMH 346 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp--------f~d~sfDlV~~~~ 346 (430)
.+|||+||+.|.|..++.++ ...++++|+..-. .-..+.++.+|..... .....+|+|++-.
T Consensus 24 ~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-------~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ 96 (180)
T d1ej0a_ 24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-------PIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDM 96 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-------CCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEeccCCcceEEEEeeccccceEEEeeccccc-------ccCCceEeecccccchhhhhhhhhccCcceeEEEecc
Confidence 45799999999999999886 4678888654311 1122567777654422 2356899999943
Q ss_pred chh--------hcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEEEEecccccCCCchhH
Q 043503 347 VLS--------NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLRWNVGMKLDRGVKKNE 418 (430)
Q Consensus 347 ~L~--------~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~~~~~~k~~~g~~~~~ 418 (430)
... +...-......+.-+.++|++||.|++--|- +. ....+...+... |+.+....+.. .+. ...|
T Consensus 97 ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~--g~-~~~~l~~~l~~~-F~~V~~~KP~a-SR~-~SsE 170 (180)
T d1ej0a_ 97 APNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ--GE-GFDEYLREIRSL-FTKVKVRKPDS-SRA-RSRE 170 (180)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES--ST-THHHHHHHHHHH-EEEEEEECCTT-SCT-TCCE
T ss_pred cchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec--Cc-cHHHHHHHHHhh-cCEEEEECCCC-ccc-CCce
Confidence 321 1011113445677788999999999997654 22 234455555443 67666443333 332 3345
Q ss_pred HHhHhh
Q 043503 419 WYFSAV 424 (430)
Q Consensus 419 ~~lsa~ 424 (430)
.|+-+.
T Consensus 171 ~Ylv~~ 176 (180)
T d1ej0a_ 171 VYIVAT 176 (180)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 555443
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.81 E-value=1.4e-05 Score=75.36 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=69.3
Q ss_pred CccEEEEEcCCccHHHHHHHHcC-CEEEEEecCCChhHHHHHHhc----------------CCeeEEEcccccCCCCCCc
Q 043503 276 TIRIGLDIGGGTGTFAARMRERN-VTIITTSLNLDGPFNSFIASR----------------GLISMHISVSQRLPFFENT 338 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~g-~~Vv~vdiD~s~~~le~a~~r----------------g~i~~~~~d~~~lpf~d~s 338 (430)
..++||.+|+|.|..+..+.+.+ .+|+.+ |+++.+++.+++- ..+.++.+|+..+--.+++
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~V--EiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMV--EIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEE--ESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEe--cCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 34667999999999999988774 467777 5568888877642 2378888887543224678
Q ss_pred eeEEEEccchhhcCCc--hhHHHHHHHHHHhccCCcEEEEe
Q 043503 339 LDIVHSMHVLSNWIPD--SMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 339 fDlV~~~~~L~~~~~d--~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
||+|+.- ......+. -....++..+.+.|+|||.+++-
T Consensus 150 yDvIi~D-~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 150 FDVIIAD-STDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp EEEEEEE-CCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEEe-CCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 9999983 22221111 01257899999999999998874
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.77 E-value=5.7e-05 Score=67.03 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=63.2
Q ss_pred CccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcC
Q 043503 276 TIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
...+|||.|||+|.|...+.++ ...++++|+|... ...+ ....++.++..... ....||+|+++.......
T Consensus 19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~--~~~~---~~~~~~~~~~~~~~-~~~~fd~ii~npP~~~~~ 92 (223)
T d2ih2a1 19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKA--LDLP---PWAEGILADFLLWE-PGEAFDLILGNPPYGIVG 92 (223)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTT--CCCC---TTEEEEESCGGGCC-CSSCEEEEEECCCCCCBS
T ss_pred CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHH--Hhhc---ccceeeeeehhccc-cccccceecccCcccccc
Confidence 3356799999999999888765 5678999776432 1111 11456677655444 357899999975542211
Q ss_pred C--------------------------chhHHHHHHHHHHhccCCcEEEEe
Q 043503 353 P--------------------------DSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 353 ~--------------------------d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
. ......++..+.+.|+|||++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I 143 (223)
T d2ih2a1 93 EASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV 143 (223)
T ss_dssp CTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEE
Confidence 0 001245678899999999997654
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.70 E-value=4e-06 Score=77.99 Aligned_cols=81 Identities=11% Similarity=0.174 Sum_probs=60.4
Q ss_pred HHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCCCCCceeE
Q 043503 266 DQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPFFENTLDI 341 (430)
Q Consensus 266 d~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf~d~sfDl 341 (430)
++++.........+|||||||+|.++..|++++.+|+++++ +..+.+.++++ ..+.++.+|+..++++...++.
T Consensus 19 ~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~--D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~~ 96 (245)
T d1yuba_ 19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIEL--DSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYK 96 (245)
T ss_dssp HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSS--SCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEE
T ss_pred HHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeee--cccchhhhhhhhhhccchhhhhhhhhccccccceeee
Confidence 34444344444566799999999999999999999999855 45555555544 3488889999998888888888
Q ss_pred EEEccch
Q 043503 342 VHSMHVL 348 (430)
Q Consensus 342 V~~~~~L 348 (430)
|+++-..
T Consensus 97 vv~NLPY 103 (245)
T d1yuba_ 97 IVGNIPY 103 (245)
T ss_dssp EEEECCS
T ss_pred Eeeeeeh
Confidence 8886554
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.56 E-value=0.00017 Score=63.27 Aligned_cols=94 Identities=15% Similarity=0.182 Sum_probs=64.0
Q ss_pred EEEEEcCCccHHHHHHHHcCC-EEEEEecCCChhHHHHHHhc----CC----eeEEEccccc---CCCCCCceeEEEEcc
Q 043503 279 IGLDIGGGTGTFAARMRERNV-TIITTSLNLDGPFNSFIASR----GL----ISMHISVSQR---LPFFENTLDIVHSMH 346 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~-~Vv~vdiD~s~~~le~a~~r----g~----i~~~~~d~~~---lpf~d~sfDlV~~~~ 346 (430)
+|||+.||||.++.+.+.+|+ .|+.+ |.+......++++ +. ..++..|... .......||+|++-.
T Consensus 46 ~vLDlFaGsG~~glEalSRGA~~v~fV--E~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDP 123 (183)
T d2ifta1 46 ECLDGFAGSGSLGFEALSRQAKKVTFL--ELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 123 (183)
T ss_dssp EEEETTCTTCHHHHHHHHTTCSEEEEE--CSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred eEeecccCccceeeeeeeecceeeEEe--ecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEech
Confidence 469999999999999999987 67777 6666666555443 22 4445454322 223456799999965
Q ss_pred chhhcCCchhHHHHHHHHHH--hccCCcEEEEee
Q 043503 347 VLSNWIPDSMLEFTLYDIYR--LLRPGGIFWLDR 378 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~R--vLrPGG~lvl~~ 378 (430)
.... ......+..+.. .|+++|.+++.+
T Consensus 124 PY~~----~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 124 PFHF----NLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp CSSS----CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hHhh----hhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 5421 125566666654 799999999965
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.51 E-value=0.00037 Score=65.25 Aligned_cols=127 Identities=15% Similarity=0.115 Sum_probs=81.8
Q ss_pred CccEEEEEcCCccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhc----------CCeeEEEccccc-CCCCCCceeEE
Q 043503 276 TIRIGLDIGGGTGTFAARMRER-N-VTIITTSLNLDGPFNSFIASR----------GLISMHISVSQR-LPFFENTLDIV 342 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~-lpf~d~sfDlV 342 (430)
..++||-||.|.|..+..+.+. + .+|+.+ |+++.+.+.+++. ..+.++.+|+.. +.-.+++||+|
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~V--EID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLV--DIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEE--ESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEe--cCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 3466799999999999999987 3 578888 4557777776543 237888888654 22346789999
Q ss_pred EEccchhhcCCc--hhHHHHHHHHHHhccCCcEEEEeeccc-cCcCcHHHHHHHHHHcCCEEEEEE
Q 043503 343 HSMHVLSNWIPD--SMLEFTLYDIYRLLRPGGIFWLDRFFC-FGSQLNETYVPMLDRIGFKKLRWN 405 (430)
Q Consensus 343 ~~~~~L~~~~~d--~~l~~~L~ei~RvLrPGG~lvl~~f~~-~~~~~~~~~~~ll~~~Gfk~l~~~ 405 (430)
+.-. .....+. -....+++.+.+.|+|||.++.-.-.. ...+....+.+.+.+..-.+..+.
T Consensus 153 i~D~-~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~ 217 (274)
T d1iy9a_ 153 MVDS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYT 217 (274)
T ss_dssp EESC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEE
T ss_pred EEcC-CCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEEEE
Confidence 9832 2111110 013568999999999999998742111 112233456666666644444443
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.43 E-value=0.00046 Score=65.79 Aligned_cols=142 Identities=15% Similarity=0.064 Sum_probs=89.3
Q ss_pred CCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHHH----hcCC--eeEEEcc
Q 043503 258 NGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFIA----SRGL--ISMHISV 328 (430)
Q Consensus 258 ~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a~----~rg~--i~~~~~d 328 (430)
+.........++...++.. |||+.+|.|.=+..+++. ...+++. |.++.-+.... .-|. +.+...|
T Consensus 101 QD~aS~l~~~~l~~~~g~~---vlD~CAapGgKt~~l~~~~~~~~~i~a~--d~~~~r~~~l~~~~~r~~~~~i~~~~~d 175 (313)
T d1ixka_ 101 QEASSMYPPVALDPKPGEI---VADMAAAPGGKTSYLAQLMRNDGVIYAF--DVDENRLRETRLNLSRLGVLNVILFHSS 175 (313)
T ss_dssp CCHHHHHHHHHHCCCTTCE---EEECCSSCSHHHHHHHHHTTTCSEEEEE--CSCHHHHHHHHHHHHHHTCCSEEEESSC
T ss_pred ecccccchhhcccCCccce---eeecccchhhhhHhhhhhcccccceeee--ccCHHHHHHHHHHHHHHHhhcccccccc
Confidence 4444555566666666544 599999999877777654 5678887 55565444433 2255 4455566
Q ss_pred cccCCCCCCceeEEEEc------cchhh-------cCCc------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHH
Q 043503 329 SQRLPFFENTLDIVHSM------HVLSN-------WIPD------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNET 389 (430)
Q Consensus 329 ~~~lpf~d~sfDlV~~~------~~L~~-------~~~d------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~ 389 (430)
...++..+..||.|++- .++.. +.++ .....+|....+.|||||+++.++=....++-...
T Consensus 176 ~~~~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~V 255 (313)
T d1ixka_ 176 SLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFV 255 (313)
T ss_dssp GGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHH
T ss_pred ccccccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHH
Confidence 66666667889999981 11100 0110 13455888999999999999887622222333356
Q ss_pred HHHHHHHcCCEEEEE
Q 043503 390 YVPMLDRIGFKKLRW 404 (430)
Q Consensus 390 ~~~ll~~~Gfk~l~~ 404 (430)
+..++++.+|+.+..
T Consensus 256 V~~~L~~~~~~~~~~ 270 (313)
T d1ixka_ 256 IQWALDNFDVELLPL 270 (313)
T ss_dssp HHHHHHHSSEEEECC
T ss_pred HHHHHhcCCCEEeec
Confidence 777888888776643
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.40 E-value=0.00018 Score=68.28 Aligned_cols=99 Identities=18% Similarity=0.169 Sum_probs=69.1
Q ss_pred CccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----------CCeeEEEcccccC-CCCCCceeEE
Q 043503 276 TIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----------GLISMHISVSQRL-PFFENTLDIV 342 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~l-pf~d~sfDlV 342 (430)
..++||-||+|.|..+..+.+. ..+|+.+ |+++.+++.+++. ..+.++.+|+..+ .-.++.||+|
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~V--EIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 166 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILC--EVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 166 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEE--ESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEe--cCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence 4567799999999999999987 3578888 4557777776543 3378888886443 2346789999
Q ss_pred EEccchhhcC-Cc--hhHHHHHHHHHHhccCCcEEEEe
Q 043503 343 HSMHVLSNWI-PD--SMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 343 ~~~~~L~~~~-~d--~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
++- ...... +. -....++..+.+.|+|||.+++-
T Consensus 167 i~D-~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 167 IID-STDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp EEE-C----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEc-CCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 983 222211 11 11357999999999999999874
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.00023 Score=67.12 Aligned_cols=125 Identities=12% Similarity=0.130 Sum_probs=79.1
Q ss_pred CCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCChhHHHHHHhc----------CCeeEEEcccccC-CCCCCceeE
Q 043503 275 GTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDGPFNSFIASR----------GLISMHISVSQRL-PFFENTLDI 341 (430)
Q Consensus 275 ~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~l-pf~d~sfDl 341 (430)
...++||-||.|.|..+..+.+. ..+|+.+ |+++.+.+.+++. ..+.++.+|+..+ .-..++||+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~v--EiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQC--EIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV 154 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEE--ESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeec--cCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCE
Confidence 34567899999999999999987 4577777 5557777777543 3488888886442 234578999
Q ss_pred EEEccchhhcC-Cc-hhHHHHHHHHHHhccCCcEEEEeeccc-cCcCcHHHHHHHHHHcCCEEEE
Q 043503 342 VHSMHVLSNWI-PD-SMLEFTLYDIYRLLRPGGIFWLDRFFC-FGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 342 V~~~~~L~~~~-~d-~~l~~~L~ei~RvLrPGG~lvl~~f~~-~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
|++- ...... +. -....++..+.+.|+|||.+++..... ...+....+.+.+... |..+.
T Consensus 155 Ii~D-~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~-F~~v~ 217 (285)
T d2o07a1 155 IITD-SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL-FPVVA 217 (285)
T ss_dssp EEEE-CC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH-CSEEE
T ss_pred EEEc-CCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhc-CCeee
Confidence 9983 221111 11 113458999999999999998753221 1122234445555554 55443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=0.00034 Score=62.94 Aligned_cols=89 Identities=20% Similarity=0.157 Sum_probs=64.9
Q ss_pred EEEEEcCCccHHHHHHHHc--CCEEEEEecCCChh---HHHHHHhc-CC--eeEEEcccccCCCCCCceeEEEEccchhh
Q 043503 279 IGLDIGGGTGTFAARMRER--NVTIITTSLNLDGP---FNSFIASR-GL--ISMHISVSQRLPFFENTLDIVHSMHVLSN 350 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~~---~le~a~~r-g~--i~~~~~d~~~lpf~d~sfDlV~~~~~L~~ 350 (430)
.++|+|+|.|-=+..++-. +.+++.+ |.... +++.+... |+ +.++...++.+. .+.+||+|++ +++..
T Consensus 68 ~ilDiGsGaG~PGi~laI~~p~~~~~Lv--es~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~s-RA~~~ 143 (207)
T d1jsxa_ 68 RFIDVGTGPGLPGIPLSIVRPEAHFTLL--DSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVIS-RAFAS 143 (207)
T ss_dssp EEEEETCTTTTTHHHHHHHCTTSEEEEE--ESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEEC-SCSSS
T ss_pred ceeeeeccCCceeeehhhhcccceEEEE--ecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehh-hhhcC
Confidence 4699999999777777654 6788888 54443 33333333 54 788888888765 4568999998 44422
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
+..++.-+...+++||.+++.
T Consensus 144 ------~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 144 ------LNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ------HHHHHHHHTTSEEEEEEEEEE
T ss_pred ------HHHHHHHHHHhcCCCcEEEEE
Confidence 677899999999999999884
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.33 E-value=0.00033 Score=66.19 Aligned_cols=124 Identities=17% Similarity=0.091 Sum_probs=80.3
Q ss_pred CCccEEEEEcCCccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhc----------CCeeEEEcccccCC--CCCCcee
Q 043503 275 GTIRIGLDIGGGTGTFAARMRER-N-VTIITTSLNLDGPFNSFIASR----------GLISMHISVSQRLP--FFENTLD 340 (430)
Q Consensus 275 ~~ir~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~lp--f~d~sfD 340 (430)
...++||=||.|.|..+..+.+. + .+++.+ |+++.+++.+++. ..+.++.+|+...- ..+++||
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~V--EiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD 156 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMC--EIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 156 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEE--ESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEe--cCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCcc
Confidence 34567899999999999999987 4 477888 5557777777542 34788888864322 3457899
Q ss_pred EEEEccchhhcC--CchhHHHHHHHHHHhccCCcEEEEeeccc-cCcCcHHHHHHHHHHcCCEE
Q 043503 341 IVHSMHVLSNWI--PDSMLEFTLYDIYRLLRPGGIFWLDRFFC-FGSQLNETYVPMLDRIGFKK 401 (430)
Q Consensus 341 lV~~~~~L~~~~--~d~~l~~~L~ei~RvLrPGG~lvl~~f~~-~~~~~~~~~~~ll~~~Gfk~ 401 (430)
+|+.- +..... ..-....+++.+.+.|+|||.+++-.-.. ...+....+.+.+.+....+
T Consensus 157 vIi~D-~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~ 219 (290)
T d1xj5a_ 157 AVIVD-SSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGS 219 (290)
T ss_dssp EEEEC-CCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSC
T ss_pred EEEEc-CCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcccc
Confidence 99983 221111 11123568999999999999998843111 11222344555566654443
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.31 E-value=0.00022 Score=68.18 Aligned_cols=123 Identities=14% Similarity=0.107 Sum_probs=76.9
Q ss_pred CccEEEEEcCCccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhc----------CCeeEEEcccccC-CCCCCceeEE
Q 043503 276 TIRIGLDIGGGTGTFAARMRER-N-VTIITTSLNLDGPFNSFIASR----------GLISMHISVSQRL-PFFENTLDIV 342 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~r----------g~i~~~~~d~~~l-pf~d~sfDlV 342 (430)
..++||-||.|.|..+..+.+. + .+|+.+ |+++.+++.+++. ..+.++.+|+..+ .-..++||+|
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~V--EID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMC--EIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEE--CSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEE--cccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 4567899999999999999987 3 478888 6668888887653 2377888876442 2346789999
Q ss_pred EEccchhhcCC--chhHHHHHHHHHHhccCCcEEEEeeccc-cCcCcHHHHHHHHHHcCCEEE
Q 043503 343 HSMHVLSNWIP--DSMLEFTLYDIYRLLRPGGIFWLDRFFC-FGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 343 ~~~~~L~~~~~--d~~l~~~L~ei~RvLrPGG~lvl~~f~~-~~~~~~~~~~~ll~~~Gfk~l 402 (430)
+.-. .....+ .-....++..+.+.|+|||.++.-.-.. ...+....+.+.+.+. |..+
T Consensus 184 I~D~-~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~v-F~~v 244 (312)
T d2b2ca1 184 ITDS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPAV 244 (312)
T ss_dssp EECC-C-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEE
T ss_pred EEcC-CCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhc-cceE
Confidence 9832 211111 1123568999999999999998742111 1112234455555554 4443
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.30 E-value=0.00077 Score=61.85 Aligned_cols=115 Identities=13% Similarity=0.154 Sum_probs=77.4
Q ss_pred CccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCCh---hHHHHHHhc-CC--eeEEEcccccCCC---CCCceeEEEE
Q 043503 276 TIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDG---PFNSFIASR-GL--ISMHISVSQRLPF---FENTLDIVHS 344 (430)
Q Consensus 276 ~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~---~~le~a~~r-g~--i~~~~~d~~~lpf---~d~sfDlV~~ 344 (430)
...+++|||+|.|-=+..++-. +.+++-+ |... .+++.+... |+ +.++...++.+.. ..++||+|++
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lv--es~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIV--DSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEE--ESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceee--cchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence 3456799999999777777653 6788877 5444 344444433 54 6777777766542 2368999999
Q ss_pred ccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHH---HHHHHHHHcCCEEEE
Q 043503 345 MHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNE---TYVPMLDRIGFKKLR 403 (430)
Q Consensus 345 ~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~---~~~~ll~~~Gfk~l~ 403 (430)
+.+. . +..++.-....+++||.+++. .+....+ .....+...|++...
T Consensus 148 -RAva----~--l~~ll~~~~~~l~~~g~~i~~----KG~~~~~El~~a~~~~~~~~~~~~~ 198 (239)
T d1xdza_ 148 -RAVA----R--LSVLSELCLPLVKKNGLFVAL----KAASAEEELNAGKKAITTLGGELEN 198 (239)
T ss_dssp -ECCS----C--HHHHHHHHGGGEEEEEEEEEE----ECC-CHHHHHHHHHHHHHTTEEEEE
T ss_pred -hhhh----C--HHHHHHHHhhhcccCCEEEEE----CCCChHHHHHHHHHHHHHcCCEEEE
Confidence 4442 2 778999999999999998874 3333333 344567778887654
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.24 E-value=0.00037 Score=64.32 Aligned_cols=123 Identities=13% Similarity=0.028 Sum_probs=69.9
Q ss_pred EEEEEcCCccHHHHHHHHcC--CEEEEEecCCCh---hHHHHHHhcCCeeEEEc-ccccCCCCCCceeEEEEccchhh--
Q 043503 279 IGLDIGGGTGTFAARMRERN--VTIITTSLNLDG---PFNSFIASRGLISMHIS-VSQRLPFFENTLDIVHSMHVLSN-- 350 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g--~~Vv~vdiD~s~---~~le~a~~rg~i~~~~~-d~~~lpf~d~sfDlV~~~~~L~~-- 350 (430)
.|+|+|||.|.++.+++++. ..|.++++-.+. ++.......+++.+... +...+ ++...|+|+|-.+-..
T Consensus 69 ~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l--~~~~~D~vlcDm~ess~~ 146 (257)
T d2p41a1 69 KVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFI--PPERCDTLLCDIGESSPN 146 (257)
T ss_dssp EEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTS--CCCCCSEEEECCCCCCSS
T ss_pred eEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhc--CCCcCCEEEeeCCCCCCC
Confidence 46999999999999999873 466666552211 11110011123444433 33333 4678999999532110
Q ss_pred c-CCchhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEEE
Q 043503 351 W-IPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKLR 403 (430)
Q Consensus 351 ~-~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l~ 403 (430)
+ ++......++.-+.+.|+|||-|++--|-+..++..+.+..+-.+.|=..++
T Consensus 147 ~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~fgg~lVR 200 (257)
T d2p41a1 147 PTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGGALVR 200 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHCCEEEC
T ss_pred chhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHhCCeeEc
Confidence 0 1111233567777889999999988655444444444444444455545554
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.06 E-value=0.00095 Score=60.94 Aligned_cols=107 Identities=14% Similarity=0.092 Sum_probs=64.5
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHc------CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC----C
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER------NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP----F 334 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~------g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp----f 334 (430)
+.+++...++. +||+||++.|.-+..+++. +.+++++|+|.+.... .......+.++.+|..... +
T Consensus 72 ~~eli~~~KPk---~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~-~~~~~~~I~~i~gDs~~~~~~~~l 147 (232)
T d2bm8a1 72 YHDMLWELRPR---TIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI-PASDMENITLHQGDCSDLTTFEHL 147 (232)
T ss_dssp HHHHHHHHCCS---EEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC-CGGGCTTEEEEECCSSCSGGGGGG
T ss_pred HHHHHHHhCCC---EEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhh-hhccccceeeeecccccHHHHHHH
Confidence 34454433433 4599999999766655532 5799999887643111 1122245889998865433 3
Q ss_pred CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 335 FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 335 ~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
....+|+|+.- .- | ..+..+.. + ++...|+|||++++.+..
T Consensus 148 ~~~~~dlIfID-~~-H-~~~~v~~~-~-~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 148 REMAHPLIFID-NA-H-ANTFNIMK-W-AVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp SSSCSSEEEEE-SS-C-SSHHHHHH-H-HHHHTCCTTCEEEECSCH
T ss_pred HhcCCCEEEEc-CC-c-chHHHHHH-H-HHhcccCcCCEEEEEcCC
Confidence 35568888763 22 2 22211222 2 466899999999997643
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.03 E-value=0.0055 Score=57.11 Aligned_cols=143 Identities=12% Similarity=0.048 Sum_probs=83.3
Q ss_pred CCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc--CCEEEEEecCCCh--hHHHHHHhcCC--eeEEEccccc
Q 043503 258 NGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER--NVTIITTSLNLDG--PFNSFIASRGL--ISMHISVSQR 331 (430)
Q Consensus 258 ~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~--g~~Vv~vdiD~s~--~~le~a~~rg~--i~~~~~d~~~ 331 (430)
+......+-.++...++. +|||+++|.|.=+..+++. +..|+++|++... .+.+.++.-|. +.....+...
T Consensus 87 QD~sS~l~~~~L~~~~g~---~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~ 163 (284)
T d1sqga2 87 QDASAQGCMTWLAPQNGE---HILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYP 163 (284)
T ss_dssp CCHHHHTHHHHHCCCTTC---EEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCT
T ss_pred ccccccccccccCccccc---eeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeecccccc
Confidence 444444455566555544 4599999999988888776 4678888665432 22333444455 2222233222
Q ss_pred CC-CCCCceeEEEEc------cchh-------hcCCc------hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHH
Q 043503 332 LP-FFENTLDIVHSM------HVLS-------NWIPD------SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYV 391 (430)
Q Consensus 332 lp-f~d~sfDlV~~~------~~L~-------~~~~d------~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~ 391 (430)
.. ...+.||.|++- .++. .|.+. .....+|..+.+.|||||+++.++=.....+-.+.+.
T Consensus 164 ~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~ 243 (284)
T d1sqga2 164 SQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIK 243 (284)
T ss_dssp HHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHH
T ss_pred chhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHH
Confidence 11 345689999981 1121 11111 1245688889999999999998762222233334566
Q ss_pred HHHHH-cCCEEEE
Q 043503 392 PMLDR-IGFKKLR 403 (430)
Q Consensus 392 ~ll~~-~Gfk~l~ 403 (430)
.++++ .+|+.+.
T Consensus 244 ~~l~~~~~~~~~~ 256 (284)
T d1sqga2 244 AFLQRTADAELCE 256 (284)
T ss_dssp HHHHHCTTCEECS
T ss_pred HHHHhCCCcEEec
Confidence 67776 4576544
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.0017 Score=60.84 Aligned_cols=80 Identities=15% Similarity=0.276 Sum_probs=55.9
Q ss_pred HHHHHccCCCCCccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc-------CCeeEEEcccccCCCCCC
Q 043503 265 IDQVLSMKPLGTIRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR-------GLISMHISVSQRLPFFEN 337 (430)
Q Consensus 265 id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r-------g~i~~~~~d~~~lpf~d~ 337 (430)
++++.+.......++|||||+|+|.++..|++++.+|+++++ ++.+.+..+++ +.+.++.+|+-...++
T Consensus 10 ~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~--D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~-- 85 (278)
T d1zq9a1 10 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACEL--DPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-- 85 (278)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEES--CHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--
T ss_pred HHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEE--ccchhHHHHHHHhhhccccchhhhHHHHhhhhhh--
Confidence 344444333334456799999999999999999999999854 46666665543 3478899998776654
Q ss_pred ceeEEEEccch
Q 043503 338 TLDIVHSMHVL 348 (430)
Q Consensus 338 sfDlV~~~~~L 348 (430)
.++.|+++-..
T Consensus 86 ~~~~vV~NLPY 96 (278)
T d1zq9a1 86 FFDTCVANLPY 96 (278)
T ss_dssp CCSEEEEECCG
T ss_pred hhhhhhcchHH
Confidence 35678875443
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.0011 Score=61.34 Aligned_cols=56 Identities=14% Similarity=0.212 Sum_probs=45.0
Q ss_pred ccEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc----CCeeEEEcccccCCC
Q 043503 277 IRIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR----GLISMHISVSQRLPF 334 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r----g~i~~~~~d~~~lpf 334 (430)
.+.||+||||+|.++..|++++.+|+++ +++..+.+..+++ +.+.++.+|+-.+.+
T Consensus 22 ~d~vlEIGpG~G~LT~~Ll~~~~~v~ai--EiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 22 GQAMVEIGPGLAALTEPVGERLDQLTVI--ELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF 81 (252)
T ss_dssp TCCEEEECCTTTTTHHHHHTTCSCEEEE--CCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred CCEEEEECCCchHHHHHHHccCCceEEE--EeccchhHHHHHHhhhccchhHHhhhhhhhcc
Confidence 3456999999999999999999999998 5557787777665 338888999877653
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.016 Score=53.97 Aligned_cols=134 Identities=10% Similarity=0.001 Sum_probs=74.6
Q ss_pred CCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc---CCEEEEEecCCChhHHHHH----HhcCC--eeEEEcc
Q 043503 258 NGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER---NVTIITTSLNLDGPFNSFI----ASRGL--ISMHISV 328 (430)
Q Consensus 258 ~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~---g~~Vv~vdiD~s~~~le~a----~~rg~--i~~~~~d 328 (430)
+.........++...++.. |||+++|.|.=+..+++. +..|+++|+ ++.-++.+ +..|. +.+...|
T Consensus 79 QD~sS~l~~~~L~~~~g~~---vLD~cAapGgKt~~la~l~~~~~~i~a~d~--~~~R~~~l~~~l~r~g~~~~~~~~~d 153 (293)
T d2b9ea1 79 QDRASCLPAMLLDPPPGSH---VIDACAAPGNKTSHLAALLKNQGKIFAFDL--DAKRLASMATLLARAGVSCCELAEED 153 (293)
T ss_dssp CCTGGGHHHHHHCCCTTCE---EEESSCTTCHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred cCCcccccccccCCCccce---EEecccchhhHHHHHHHHhcCCceEeeecC--CHHHHHHHHHHHHhcCccceeeeehh
Confidence 3333444556666555443 599999999988888765 568888854 45433333 33354 6777777
Q ss_pred cccCCCC---CCceeEEEEc------cchhh-----c--CCch--------hHHHHHHHHHHhccCCcEEEEeeccccCc
Q 043503 329 SQRLPFF---ENTLDIVHSM------HVLSN-----W--IPDS--------MLEFTLYDIYRLLRPGGIFWLDRFFCFGS 384 (430)
Q Consensus 329 ~~~lpf~---d~sfDlV~~~------~~L~~-----~--~~d~--------~l~~~L~ei~RvLrPGG~lvl~~f~~~~~ 384 (430)
...+... .+.||.|++- .++.. | .... ....++..+. .++|||.++.++=....+
T Consensus 154 ~~~~~~~~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ 232 (293)
T d2b9ea1 154 FLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQE 232 (293)
T ss_dssp GGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGG
T ss_pred hhhhcccccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChh
Confidence 7665422 2579999982 11110 1 0000 1122444444 479999988765222223
Q ss_pred CcHHHHHHHHHHc
Q 043503 385 QLNETYVPMLDRI 397 (430)
Q Consensus 385 ~~~~~~~~ll~~~ 397 (430)
+-.+.+...+++.
T Consensus 233 ENe~vV~~~L~~~ 245 (293)
T d2b9ea1 233 ENEDVVRDALQQN 245 (293)
T ss_dssp GTHHHHHHHHTTS
T ss_pred HhHHHHHHHHHhC
Confidence 3334566666654
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.35 E-value=0.0024 Score=62.82 Aligned_cols=119 Identities=11% Similarity=0.049 Sum_probs=72.3
Q ss_pred cceeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc----C-----------CEEEEEecCCChhHHHHH
Q 043503 252 SRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER----N-----------VTIITTSLNLDGPFNSFI 316 (430)
Q Consensus 252 ~~~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~----g-----------~~Vv~vdiD~s~~~le~a 316 (430)
..+..+....++.++ ++...++ .+|+|.+||+|.|...+.++ + ..+.|.|+ ++.+...+
T Consensus 142 G~f~TP~~Iv~~mv~-ll~~~~~---~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~--~~~~~~la 215 (425)
T d2okca1 142 GQYFTPRPLIQAMVD-CINPQMG---ETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDN--TPLVVTLA 215 (425)
T ss_dssp GGGCCCHHHHHHHHH-HHCCCTT---CCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEES--CHHHHHHH
T ss_pred hhhccchhhhHhhhe-eccCccc---ceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhc--cHHHHHHH
Confidence 344556666555433 3333333 44699999999999887764 1 34778754 45555444
Q ss_pred Hhc----CC----eeEEEcccccCCCCCCceeEEEEccchhhcC-C-------------chhHHHHHHHHHHhccCCcEE
Q 043503 317 ASR----GL----ISMHISVSQRLPFFENTLDIVHSMHVLSNWI-P-------------DSMLEFTLYDIYRLLRPGGIF 374 (430)
Q Consensus 317 ~~r----g~----i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~-~-------------d~~l~~~L~ei~RvLrPGG~l 374 (430)
+.+ |. ..+...|.-.. .+...||+|+++..+..-. . ...-..++..+.+.|+|||.+
T Consensus 216 ~~n~~l~g~~~~~~~i~~~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~ 294 (425)
T d2okca1 216 SMNLYLHGIGTDRSPIVCEDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRA 294 (425)
T ss_dssp HHHHHHTTCCSSCCSEEECCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred HhhhhhcCCccccceeecCchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeE
Confidence 432 32 45666665432 3467899999976662210 0 001234889999999999987
Q ss_pred EEe
Q 043503 375 WLD 377 (430)
Q Consensus 375 vl~ 377 (430)
.+.
T Consensus 295 ~iI 297 (425)
T d2okca1 295 AVV 297 (425)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.57 E-value=0.041 Score=46.14 Aligned_cols=92 Identities=13% Similarity=0.038 Sum_probs=61.4
Q ss_pred EEEEEcCC-ccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC----------CCCCceeEEEEcc
Q 043503 279 IGLDIGGG-TGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP----------FFENTLDIVHSMH 346 (430)
Q Consensus 279 ~VLDIGcG-tG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp----------f~d~sfDlV~~~~ 346 (430)
+||-+||| .|.++..+++. |++|+++ |.++.-++.+++-|.-..+..+..... ...+.+|+|+-.-
T Consensus 29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v--~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~ 106 (170)
T d1e3ja2 29 TVLVIGAGPIGLVSVLAAKAYGAFVVCT--ARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCS 106 (170)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEE--ESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECS
T ss_pred EEEEEcccccchhhHhhHhhhccccccc--chHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeecC
Confidence 45778988 46777777765 9999988 666777888888776333333211111 1134689988732
Q ss_pred chhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 347 VLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 347 ~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
.- ...+....++++|||.+++.....
T Consensus 107 g~---------~~~~~~a~~~~~~~G~iv~~G~~~ 132 (170)
T d1e3ja2 107 GN---------EKCITIGINITRTGGTLMLVGMGS 132 (170)
T ss_dssp CC---------HHHHHHHHHHSCTTCEEEECSCCS
T ss_pred CC---------hHHHHHHHHHHhcCCceEEEecCC
Confidence 11 246778889999999999876543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.54 E-value=0.022 Score=48.70 Aligned_cols=95 Identities=14% Similarity=0.073 Sum_probs=62.6
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccccC-------C--CCCCceeEEEEc
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQRL-------P--FFENTLDIVHSM 345 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~l-------p--f~d~sfDlV~~~ 345 (430)
.+||-+|+|. |.++..+++. |+ +|+++ |.++..++.+++-|--.++...-... . .....+|+|+..
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~--~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~ 107 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVI--AGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEA 107 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEE--ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred CEEEEECCCccchhheeccccccccccccc--ccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEeec
Confidence 4468899874 6777778776 86 78888 56688888888877633332211111 0 123469999874
Q ss_pred cchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccccC
Q 043503 346 HVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCFG 383 (430)
Q Consensus 346 ~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~~ 383 (430)
-.. + ..+....+.|+|||.+++......+
T Consensus 108 vG~----~-----~~~~~a~~~l~~~G~iv~~G~~~~~ 136 (182)
T d1vj0a2 108 TGD----S-----RALLEGSELLRRGGFYSVAGVAVPQ 136 (182)
T ss_dssp SSC----T-----THHHHHHHHEEEEEEEEECCCCSCC
T ss_pred CCc----h-----hHHHHHHHHhcCCCEEEEEeecCCC
Confidence 211 1 2467888999999999887655433
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.39 E-value=0.048 Score=46.47 Aligned_cols=99 Identities=15% Similarity=0.081 Sum_probs=65.8
Q ss_pred HccCCCCCccEEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCce
Q 043503 269 LSMKPLGTIRIGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTL 339 (430)
Q Consensus 269 L~~~p~~~ir~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sf 339 (430)
....++.++ |=+|||. |.++..+++. |+ +|+++ |.++.-++.+++-|...++....+.+. .....+
T Consensus 23 a~~~~g~~V---lI~GaG~vGl~~~q~ak~~Ga~~Vi~~--d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~ 97 (174)
T d1jqba2 23 ADIEMGSSV---VVIGIGAVGLMGIAGAKLRGAGRIIGV--GSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGV 97 (174)
T ss_dssp TTCCTTCCE---EEECCSHHHHHHHHHHHTTTCSCEEEE--CCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCE
T ss_pred hCCCCCCEE---EEEcCCcchhhhhhhhhcccccccccc--cchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCc
Confidence 344555444 7789987 7888888887 76 68877 667887888888886444433222111 123459
Q ss_pred eEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 340 DIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 340 DlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
|+|+-.-.. + ..+.+..+++||||.+++..+..
T Consensus 98 D~vid~~g~----~-----~~~~~a~~~~~~~G~iv~~G~~~ 130 (174)
T d1jqba2 98 DRVIMAGGG----S-----ETLSQAVKMVKPGGIISNINYHG 130 (174)
T ss_dssp EEEEECSSC----T-----THHHHHHHHEEEEEEEEECCCCC
T ss_pred ceEEEccCC----H-----HHHHHHHHHHhcCCEEEEEeecC
Confidence 999874222 1 24677889999999999976553
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.34 E-value=0.018 Score=50.39 Aligned_cols=101 Identities=15% Similarity=0.147 Sum_probs=64.6
Q ss_pred EEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccchh
Q 043503 279 IGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L~ 349 (430)
+||-+|||. |..++.+++. |. +|+++ |.++..++.|++.|...++....+++. .....+|+++-.-...
T Consensus 28 tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~--d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG~~ 105 (195)
T d1kola2 28 TVYVAGAGPVGLAAAASARLLGAAVVIVG--DLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGFE 105 (195)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCTT
T ss_pred EEEEECcCHHHHHHHHHHHhhcccceeee--cccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECcccc
Confidence 459999998 6677777755 65 67777 667888899999887443322111110 1245689999643211
Q ss_pred ------hcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 350 ------NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 350 ------~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
...........+..+.+++||||.+.+...+.
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~ 143 (195)
T d1kola2 106 ARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYV 143 (195)
T ss_dssp CBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCC
T ss_pred ccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecC
Confidence 00001113468999999999999999877543
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.25 E-value=0.01 Score=57.48 Aligned_cols=91 Identities=14% Similarity=0.049 Sum_probs=61.4
Q ss_pred cEEEEEcCCccHHHHHHHH-cCC-EEEEEecCCChhHHHHHHhc----CC-----------------eeEEEcccccCCC
Q 043503 278 RIGLDIGGGTGTFAARMRE-RNV-TIITTSLNLDGPFNSFIASR----GL-----------------ISMHISVSQRLPF 334 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~-~g~-~Vv~vdiD~s~~~le~a~~r----g~-----------------i~~~~~d~~~lpf 334 (430)
.+|||..||+|..+++.+. .++ .|+.. |+++..++.++++ +. +.+...|+..+..
T Consensus 47 ~~vLD~~sasG~rsiRya~E~~~~~V~~n--Dis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 47 KIVLDALSATGIRGIRFALETPAEEVWLN--DISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp SEEEESSCTTSHHHHHHHHHSSCSEEEEE--ESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CEEEEcCCCccHHHHHHHHhCCCCEEEEe--cCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 3469999999999997665 454 67777 5567666666544 32 2334445433221
Q ss_pred -CCCceeEEEEccchhhcCCchhHHHHHHHHHHhccCCcEEEEe
Q 043503 335 -FENTLDIVHSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLD 377 (430)
Q Consensus 335 -~d~sfDlV~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~ 377 (430)
....||+|..- .+ - ....+|..+.|.++.||.+.++
T Consensus 125 ~~~~~fDvIDiD-Pf---G---s~~pfldsAi~a~~~~Gll~vT 161 (375)
T d2dula1 125 ERHRYFHFIDLD-PF---G---SPMEFLDTALRSAKRRGILGVT 161 (375)
T ss_dssp HSTTCEEEEEEC-CS---S---CCHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCcCCcccCC-CC---C---CcHHHHHHHHHHhccCCEEEEE
Confidence 24579999983 23 2 2356899999999999999885
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.82 E-value=0.025 Score=47.75 Aligned_cols=93 Identities=9% Similarity=0.010 Sum_probs=60.1
Q ss_pred EEEEEcCC-ccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccc-c-CCCCCCceeEEEEccchhhcCCc
Q 043503 279 IGLDIGGG-TGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQ-R-LPFFENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 279 ~VLDIGcG-tG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~-~-lpf~d~sfDlV~~~~~L~~~~~d 354 (430)
+||-+|+| .|.++..+++. |++|+++ |.++..++.+++-|--.++...-+ . ..-..+.||+|+..-...+ +
T Consensus 30 ~vlI~GaG~vG~~a~q~ak~~G~~vi~~--~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~--~- 104 (168)
T d1piwa2 30 KVGIVGLGGIGSMGTLISKAMGAETYVI--SRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT--D- 104 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEE--ESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST--T-
T ss_pred EEEEECCCCcchhHHHHhhhcccccccc--ccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc--c-
Confidence 45889998 57777777766 9999988 445667888888786444432111 1 1122457999887422211 1
Q ss_pred hhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 355 SMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
..+....++|+|||.+++....
T Consensus 105 ----~~~~~~~~~l~~~G~iv~~G~~ 126 (168)
T d1piwa2 105 ----IDFNIMPKAMKVGGRIVSISIP 126 (168)
T ss_dssp ----CCTTTGGGGEEEEEEEEECCCC
T ss_pred ----chHHHHHHHhhccceEEEeccc
Confidence 1244678899999999987644
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=94.74 E-value=0.028 Score=56.40 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=67.6
Q ss_pred cceeecCCchhHHHHHHHccCCCCCccEEEEEcCCccHHHHHHHHc----C----------------CEEEEEecCCChh
Q 043503 252 SRWLIDNGKLDYGIDQVLSMKPLGTIRIGLDIGGGTGTFAARMRER----N----------------VTIITTSLNLDGP 311 (430)
Q Consensus 252 ~~~~~~~~~~~~~id~lL~~~p~~~ir~VLDIGcGtG~~a~~La~~----g----------------~~Vv~vdiD~s~~ 311 (430)
..++.+....++.+ .++...++ .+|+|-.||+|.|...+.+. . ..++|.++ .+.
T Consensus 144 GqfyTP~~Iv~~mv-~ll~~~~~---~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~--~~~ 217 (524)
T d2ar0a1 144 GQYFTPRPLIKTII-HLLKPQPR---EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL--VPG 217 (524)
T ss_dssp -CCCCCHHHHHHHH-HHHCCCTT---CCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEES--CHH
T ss_pred chhccccchhHhhh-hcccCccc---hhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhcc--CHH
Confidence 33455566555533 44443333 34699999999998776553 1 24678754 455
Q ss_pred HHHHHHhc----CC-------eeEEEcccccCC-CCCCceeEEEEccchhhcCC-----------chhHHHHHHHHHHhc
Q 043503 312 FNSFIASR----GL-------ISMHISVSQRLP-FFENTLDIVHSMHVLSNWIP-----------DSMLEFTLYDIYRLL 368 (430)
Q Consensus 312 ~le~a~~r----g~-------i~~~~~d~~~lp-f~d~sfDlV~~~~~L~~~~~-----------d~~l~~~L~ei~RvL 368 (430)
+...++.+ |. ..+..++...-+ .....||+|+++..+..-.. ...-..++..+.+.|
T Consensus 218 ~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~L 297 (524)
T d2ar0a1 218 TRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL 297 (524)
T ss_dssp HHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhc
Confidence 55555432 22 112222221111 23467999999766532110 001224888999999
Q ss_pred cCCcEEEEe
Q 043503 369 RPGGIFWLD 377 (430)
Q Consensus 369 rPGG~lvl~ 377 (430)
+|||++.+.
T Consensus 298 k~gGr~aiI 306 (524)
T d2ar0a1 298 HPGGRAAVV 306 (524)
T ss_dssp EEEEEEEEE
T ss_pred cccCcEEEE
Confidence 999997654
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.65 E-value=0.079 Score=44.63 Aligned_cols=89 Identities=19% Similarity=0.172 Sum_probs=61.0
Q ss_pred cEEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccch
Q 043503 278 RIGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L 348 (430)
.+||-.|+ |.|..+..+++. |++|++++ .++.-.+.+++.|.-.++...-.++. ...+.+|+|+..-.
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~--~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g- 106 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGTA--GTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA- 106 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH-
T ss_pred CEEEEEeccccccccccccccccCccccccc--ccccccccccccCcccccccccccHHHHhhhhhccCCceEEeeccc-
Confidence 35699985 567788888876 99998873 45666788888777544432211111 23567999998421
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
...+....++|+|||.++...
T Consensus 107 ---------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 107 ---------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp ---------HHHHHHHHHHEEEEEEEEECC
T ss_pred ---------HHHHHHHHhccCCCCEEEEEe
Confidence 235778889999999999864
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.77 E-value=0.25 Score=40.91 Aligned_cols=83 Identities=20% Similarity=0.167 Sum_probs=59.5
Q ss_pred EEEcCCc--cHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCchhHH
Q 043503 281 LDIGGGT--GTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDSMLE 358 (430)
Q Consensus 281 LDIGcGt--G~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~~l~ 358 (430)
.=||+|. +.++..+.+.|.+|++. |.++...+.+++.|.+.....+.+.+ ...|+|+.. .|....+
T Consensus 4 ~iIG~G~mG~~lA~~l~~~g~~V~~~--d~~~~~~~~a~~~~~~~~~~~~~~~~----~~~DiIila------vp~~~~~ 71 (165)
T d2f1ka2 4 GVVGLGLIGASLAGDLRRRGHYLIGV--SRQQSTCEKAVERQLVDEAGQDLSLL----QTAKIIFLC------TPIQLIL 71 (165)
T ss_dssp EEECCSHHHHHHHHHHHHTTCEEEEE--CSCHHHHHHHHHTTSCSEEESCGGGG----TTCSEEEEC------SCHHHHH
T ss_pred EEEeecHHHHHHHHHHHHCCCEEEEE--ECCchHHHHHHHhhccceeeeecccc----ccccccccc------CcHhhhh
Confidence 4468873 46777888889999988 66677788888888755444444433 357888873 3444578
Q ss_pred HHHHHHHHhccCCcEEE
Q 043503 359 FTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 359 ~~L~ei~RvLrPGG~lv 375 (430)
.++.++...++++-.+.
T Consensus 72 ~vl~~l~~~l~~~~iv~ 88 (165)
T d2f1ka2 72 PTLEKLIPHLSPTAIVT 88 (165)
T ss_dssp HHHHHHGGGSCTTCEEE
T ss_pred hhhhhhhhhccccccee
Confidence 89999999999888664
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=93.74 E-value=0.096 Score=50.16 Aligned_cols=55 Identities=24% Similarity=0.188 Sum_probs=40.5
Q ss_pred EEcccccCCCCCCceeEEEEccchhhcCCc-------------------------------hhHHHHHHHHHHhccCCcE
Q 043503 325 HISVSQRLPFFENTLDIVHSMHVLSNWIPD-------------------------------SMLEFTLYDIYRLLRPGGI 373 (430)
Q Consensus 325 ~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d-------------------------------~~l~~~L~ei~RvLrPGG~ 373 (430)
+.+.+..--||+++.|++|++.++ ||... .++..+|.-=.+-|+|||.
T Consensus 126 vpGSFY~rLfP~~Slh~~~Ss~al-HWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~ 204 (359)
T d1m6ex_ 126 VPGSFYGRLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGR 204 (359)
T ss_dssp EESCSSSCCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCE
T ss_pred cCCchhhhcCCCCceEEeeehhhh-hhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence 334554444889999999999999 78521 1455677778888999999
Q ss_pred EEEeecc
Q 043503 374 FWLDRFF 380 (430)
Q Consensus 374 lvl~~f~ 380 (430)
+++.-+.
T Consensus 205 mvl~~~g 211 (359)
T d1m6ex_ 205 MVLTILG 211 (359)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9986544
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.67 E-value=0.53 Score=39.66 Aligned_cols=92 Identities=15% Similarity=-0.009 Sum_probs=63.3
Q ss_pred cEEEEEcCCc-cHHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccccCC-------CCCCceeEEEEccc
Q 043503 278 RIGLDIGGGT-GTFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQRLP-------FFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGt-G~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp-------f~d~sfDlV~~~~~ 347 (430)
.+||=+|||. |.+++.+++. |. .|+.+ |.++.-++.+++-|...++.....+.. ...+.+|+|+-.-.
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~--d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G 107 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAI--DINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG 107 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEE--CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeee--ccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecc
Confidence 3458899988 7788888776 76 56666 677778899998887555432211111 12457899987421
Q ss_pred hhhcCCchhHHHHHHHHHHhccCC-cEEEEeecc
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPG-GIFWLDRFF 380 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPG-G~lvl~~f~ 380 (430)
-...+.+..+.++|| |.+++....
T Consensus 108 ---------~~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 108 ---------TAQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp ---------CHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred ---------cchHHHHHHHHhhcCCeEEEecCCC
Confidence 134688999999997 999987654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.51 E-value=0.31 Score=40.85 Aligned_cols=92 Identities=12% Similarity=-0.067 Sum_probs=59.5
Q ss_pred cEEEEEcCCcc-HHHHHHHHc-CCEE-EEEecCCChhHHHHHHhcCCeeEEEcccccCC-----CCCCceeEEEEccchh
Q 043503 278 RIGLDIGGGTG-TFAARMRER-NVTI-ITTSLNLDGPFNSFIASRGLISMHISVSQRLP-----FFENTLDIVHSMHVLS 349 (430)
Q Consensus 278 r~VLDIGcGtG-~~a~~La~~-g~~V-v~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp-----f~d~sfDlV~~~~~L~ 349 (430)
.+||=+|||.- .++..+++. |..+ +++ |.++.-++.+++-|...++..+.+... +.++.+|+|+-.-..
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~--~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~- 106 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGASIIIAV--DIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGS- 106 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEE--ESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCC-
T ss_pred CEEEEeCCCHHHhhhhhcccccccceeeee--ccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCc-
Confidence 34577898754 455555554 6654 455 667778888888887555543322211 235679999873211
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
...+.+..++++|+|.+++....
T Consensus 107 --------~~~~~~~~~~~~~~G~i~~~G~~ 129 (174)
T d1f8fa2 107 --------PEILKQGVDALGILGKIAVVGAP 129 (174)
T ss_dssp --------HHHHHHHHHTEEEEEEEEECCCC
T ss_pred --------HHHHHHHHhcccCceEEEEEeec
Confidence 24677889999999999886543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.38 Score=39.98 Aligned_cols=93 Identities=13% Similarity=-0.002 Sum_probs=61.6
Q ss_pred EEEEEcCCcc-HHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccccCC--------CCCCceeEEEEccc
Q 043503 279 IGLDIGGGTG-TFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQRLP--------FFENTLDIVHSMHV 347 (430)
Q Consensus 279 ~VLDIGcGtG-~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp--------f~d~sfDlV~~~~~ 347 (430)
+||=+|+|.. .++..++.. |+ +|+++ |.++.-++.+++-|--.++..+.+... .....+|+|+..-.
T Consensus 29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~--d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G 106 (171)
T d1pl8a2 29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVT--DLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTG 106 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSC
T ss_pred EEEEECCCccHHHHHHHHHHcCCceEEec--cCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEeccC
Confidence 4588899765 455555554 77 78887 666888888888876444443322211 11346899888422
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeecccc
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFCF 382 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~~ 382 (430)
. ...+....+.++|||.+++..+...
T Consensus 107 ~---------~~~~~~a~~~~~~gG~iv~~G~~~~ 132 (171)
T d1pl8a2 107 A---------EASIQAGIYATRSGGTLVLVGLGSE 132 (171)
T ss_dssp C---------HHHHHHHHHHSCTTCEEEECSCCCS
T ss_pred C---------chhHHHHHHHhcCCCEEEEEecCCC
Confidence 1 3468889999999999999876543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.37 E-value=0.17 Score=42.01 Aligned_cols=96 Identities=11% Similarity=0.045 Sum_probs=59.7
Q ss_pred ccCCCCCccEEEEEcCCc-cHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC-----CCCCceeEE
Q 043503 270 SMKPLGTIRIGLDIGGGT-GTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP-----FFENTLDIV 342 (430)
Q Consensus 270 ~~~p~~~ir~VLDIGcGt-G~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp-----f~d~sfDlV 342 (430)
...++.+ ||=+|+|. |.++..+++. |.+|+++ |.++.-++.+++-|-..++....+... ...+.+|.|
T Consensus 24 ~~~~g~~---VlV~GaG~vG~~~~~~ak~~G~~Vi~~--~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i 98 (166)
T d1llua2 24 NARPGQW---VAISGIGGLGHVAVQYARAMGLHVAAI--DIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVL 98 (166)
T ss_dssp TCCTTCE---EEEECCSHHHHHHHHHHHHTTCEEEEE--ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred CCCCCCE---EEEeeccccHHHHHHHHHHcCCcccee--cchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccc
Confidence 3444443 46688875 5566666665 8999988 566777888888887555433222111 112334555
Q ss_pred EEccchhhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 343 HSMHVLSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 343 ~~~~~L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
.+... ...+....+.|+|||.+++..+.
T Consensus 99 ~~~~~----------~~~~~~~~~~l~~~G~iv~~G~~ 126 (166)
T d1llua2 99 VTAVS----------NSAFGQAIGMARRGGTIALVGLP 126 (166)
T ss_dssp ECCSC----------HHHHHHHHTTEEEEEEEEECCCC
T ss_pred ccccc----------chHHHHHHHHhcCCcEEEEEEec
Confidence 54211 23577888999999999987644
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.05 E-value=0.32 Score=40.66 Aligned_cols=89 Identities=20% Similarity=0.143 Sum_probs=58.6
Q ss_pred cEEEEEc--CCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccch
Q 043503 278 RIGLDIG--GGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIG--cGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L 348 (430)
.+||=.| .|.|.++..+++. |+++++++ -+++-.+.+++.|.-.++....+++. .....||+|+..-.
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~--~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g- 103 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTA--GSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA- 103 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEE--SSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC-
T ss_pred CEEEEECCCCCcccccchhhccccccceeee--cccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEeccc-
Confidence 3457666 4567788888876 99998873 34566788888776444432222211 23467999998422
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEee
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDR 378 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~ 378 (430)
. ..+.+..++|+|+|.++...
T Consensus 104 -----~----~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 104 -----G----EAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp -----T----HHHHHHHHTEEEEEEEEECS
T ss_pred -----c----hHHHHHHHHhcCCCEEEEEc
Confidence 1 24667889999999998753
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.65 E-value=0.3 Score=40.51 Aligned_cols=93 Identities=20% Similarity=0.159 Sum_probs=60.4
Q ss_pred cEEEEEcC--CccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccc
Q 043503 278 RIGLDIGG--GTGTFAARMRER-N-VTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGc--GtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~ 347 (430)
.+||=+|| |.|.++..+++. | .+|+++ +.++.-++++++-|.-.++....++.. ...+.||+|+....
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~--~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g 106 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGV--DVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN 106 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEE--ESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred CEEEEEeccccceeeeeeccccccccccccc--ccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccc
Confidence 44588996 355666666655 6 588877 556777888888776433333222111 12456999998422
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
- ...+....+.++|||.+++..+..
T Consensus 107 ~---------~~~~~~a~~~l~~~G~iv~~G~~~ 131 (170)
T d1jvba2 107 S---------EKTLSVYPKALAKQGKYVMVGLFG 131 (170)
T ss_dssp C---------HHHHTTGGGGEEEEEEEEECCSSC
T ss_pred c---------chHHHhhhhhcccCCEEEEecccc
Confidence 2 245677889999999999887653
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.50 E-value=0.16 Score=43.34 Aligned_cols=90 Identities=18% Similarity=0.182 Sum_probs=59.3
Q ss_pred EEEEEc--CCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcc---ccc-CCCCCCceeEEEEccchhhc
Q 043503 279 IGLDIG--GGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISV---SQR-LPFFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 279 ~VLDIG--cGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d---~~~-lpf~d~sfDlV~~~~~L~~~ 351 (430)
+||=-| .|.|.++..+++. |++|+++ .-++.-.+.+++-|--.++.-. .+. .....+.+|+|+-.-.-
T Consensus 34 ~VLI~gaaGGVG~~aiQlak~~Ga~Viat--~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg--- 108 (176)
T d1xa0a2 34 PVLVTGATGGVGSLAVSMLAKRGYTVEAS--TGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG--- 108 (176)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEE--ESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTT---
T ss_pred EEEEEeccchHHHHHHHHHHHcCCceEEe--cCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCCc---
Confidence 347666 5677899999877 9999887 3445567777777763332211 111 12345689999884211
Q ss_pred CCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 352 IPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 352 ~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
..+.+..++|+|||.++...+.
T Consensus 109 -------~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 109 -------RTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp -------TTHHHHHHTEEEEEEEEECSCC
T ss_pred -------hhHHHHHHHhCCCceEEEeecc
Confidence 2477899999999999987665
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.39 E-value=0.78 Score=37.68 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=59.8
Q ss_pred EEEEcCCc-c-HHHHHHHHcC--CEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccchhhcCCch
Q 043503 280 GLDIGGGT-G-TFAARMRERN--VTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVLSNWIPDS 355 (430)
Q Consensus 280 VLDIGcGt-G-~~a~~La~~g--~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~~d~ 355 (430)
|+=||||. | +++..+.+.| .+|+++ |.++..++.+++.+.+.....+..... +...|+|+..- |..
T Consensus 4 I~IIG~G~mG~sla~~L~~~g~~~~I~~~--D~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~dlIila~------p~~ 73 (171)
T d2g5ca2 4 VLIVGVGFMGGSFAKSLRRSGFKGKIYGY--DINPESISKAVDLGIIDEGTTSIAKVE--DFSPDFVMLSS------PVR 73 (171)
T ss_dssp EEEESCSHHHHHHHHHHHHTTCCSEEEEE--CSCHHHHHHHHHTTSCSEEESCGGGGG--GTCCSEEEECS------CHH
T ss_pred EEEEccCHHHHHHHHHHHhcCCCeEEEEE--ECChHHHHHHHHhhcchhhhhhhhhhh--ccccccccccC------Cch
Confidence 46689986 3 5777787776 478887 777888899999887654444433322 34579998742 333
Q ss_pred hHHHHHHHHHHhccCCcEEE
Q 043503 356 MLEFTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 356 ~l~~~L~ei~RvLrPGG~lv 375 (430)
....++.++...++++-.+.
T Consensus 74 ~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 74 TFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp HHHHHHHHHHHHSCTTCEEE
T ss_pred hhhhhhhhhhcccccccccc
Confidence 46778999999999886553
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=90.88 E-value=0.39 Score=39.98 Aligned_cols=91 Identities=12% Similarity=-0.088 Sum_probs=60.7
Q ss_pred cEEEEEcCC--ccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccch
Q 043503 278 RIGLDIGGG--TGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIGcG--tG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L 348 (430)
.+||=.|+| .|.++..+++. |++|+++ +.++.-.+.+++.|--.++...-+++. .....+|+|+..-.-
T Consensus 30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~--~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g~ 107 (179)
T d1qora2 30 EQFLFHAAAGGVGLIACQWAKALGAKLIGT--VGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGR 107 (179)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHHTCEEEEE--ESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSCG
T ss_pred CEEEEEccccccchHHHHHHHHhCCeEeec--ccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEeCccH
Confidence 345777554 56788888887 9999988 566777888888886444432222211 135679999884221
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
..+......++|+|.+++....
T Consensus 108 ----------~~~~~~~~~l~~~G~~v~~g~~ 129 (179)
T d1qora2 108 ----------DTWERSLDCLQRRGLMVSFGNS 129 (179)
T ss_dssp ----------GGHHHHHHTEEEEEEEEECCCT
T ss_pred ----------HHHHHHHHHHhcCCeeeecccc
Confidence 1356888999999998775433
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=90.80 E-value=0.095 Score=46.11 Aligned_cols=79 Identities=10% Similarity=0.080 Sum_probs=50.6
Q ss_pred eEEEccccc-CC-CCCCceeEEEEccchh----hcCC---c----hhHHHHHHHHHHhccCCcEEEEeeccccCcCcHHH
Q 043503 323 SMHISVSQR-LP-FFENTLDIVHSMHVLS----NWIP---D----SMLEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNET 389 (430)
Q Consensus 323 ~~~~~d~~~-lp-f~d~sfDlV~~~~~L~----~~~~---d----~~l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~ 389 (430)
.++.+|+.. +. ++++++|+|++..... .|-. . +.+...+.++.|+|+|||.+++..- ......
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~----~~~~~~ 81 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT----PFNCAF 81 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC----HHHHHH
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccC----chhhhh
Confidence 467777643 22 5689999999975431 1110 0 1245678899999999998876421 112234
Q ss_pred HHHHHHHcCCEEEEEE
Q 043503 390 YVPMLDRIGFKKLRWN 405 (430)
Q Consensus 390 ~~~ll~~~Gfk~l~~~ 405 (430)
+...+...||....+.
T Consensus 82 ~~~~~~~~g~~~~~~i 97 (256)
T d1g60a_ 82 ICQYLVSKGMIFQNWI 97 (256)
T ss_dssp HHHHHHHTTCEEEEEE
T ss_pred hhhhhhcccceeeeee
Confidence 6677888999866544
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.76 E-value=0.36 Score=40.08 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=57.9
Q ss_pred EEEEcCCc-cHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC-CCCCceeEEEEccchhhcCCchh
Q 043503 280 GLDIGGGT-GTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP-FFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 280 VLDIGcGt-G~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp-f~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
||=+|+|. |.++..+++. |++++.+ +.++.-.+.+++-|.-.++........ ...+.+|+|+..-.. +.
T Consensus 34 VlI~GaG~vG~~a~qlak~~Ga~~i~~--~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~----~~-- 105 (168)
T d1uufa2 34 VGVVGIGGLGHMGIKLAHAMGAHVVAF--TTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA----PH-- 105 (168)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEE--ESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS----CC--
T ss_pred EEEeccchHHHHHHHHhhcccccchhh--ccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeec----ch--
Confidence 46688764 6777777776 9998877 445556788887777444443221111 223579999874221 11
Q ss_pred HHHHHHHHHHhccCCcEEEEeec
Q 043503 357 LEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 357 l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
.+....++++|||.+++...
T Consensus 106 ---~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 106 ---NLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp ---CHHHHHTTEEEEEEEEECCC
T ss_pred ---hHHHHHHHHhcCCEEEEecc
Confidence 35677889999999998654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.65 E-value=0.95 Score=35.82 Aligned_cols=101 Identities=8% Similarity=0.037 Sum_probs=62.3
Q ss_pred CCccHHHHHHHH----cCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC----CCCCceeEEEEccchhhcCCchh
Q 043503 285 GGTGTFAARMRE----RNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP----FFENTLDIVHSMHVLSNWIPDSM 356 (430)
Q Consensus 285 cGtG~~a~~La~----~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp----f~d~sfDlV~~~~~L~~~~~d~~ 356 (430)
||.|.++..+++ .|..|+.+ |.++...+.+.++....++.+|..... ..-...|.+++. .+++.
T Consensus 6 ~G~G~~G~~la~~L~~~g~~v~vi--d~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~------t~~d~ 77 (132)
T d1lssa_ 6 AGIGRVGYTLAKSLSEKGHDIVLI--DIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV------TGKEE 77 (132)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEE--ESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC------CSCHH
T ss_pred ECCCHHHHHHHHHHHHCCCCccee--cCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhccc------CCcHH
Confidence 455776666664 38999988 445666666666544577888765533 223568888883 22223
Q ss_pred HHHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEE
Q 043503 357 LEFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKK 401 (430)
Q Consensus 357 l~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~ 401 (430)
...+.....+.+.+...+... . ...+.+.+.+.|...
T Consensus 78 ~N~~~~~~~k~~~~~~iI~~~----~----~~~~~~~l~~~G~d~ 114 (132)
T d1lssa_ 78 VNLMSSLLAKSYGINKTIARI----S----EIEYKDVFERLGVDV 114 (132)
T ss_dssp HHHHHHHHHHHTTCCCEEEEC----S----STTHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHcCCceEEEEe----c----CHHHHHHHHHCCCCE
Confidence 445666677788888554432 1 133566788888754
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=90.51 E-value=0.48 Score=39.41 Aligned_cols=90 Identities=11% Similarity=0.013 Sum_probs=58.7
Q ss_pred EEEEEcCCcc-HHHHHHHHc-C-CEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC-----CCCCceeEEEEccchhh
Q 043503 279 IGLDIGGGTG-TFAARMRER-N-VTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP-----FFENTLDIVHSMHVLSN 350 (430)
Q Consensus 279 ~VLDIGcGtG-~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp-----f~d~sfDlV~~~~~L~~ 350 (430)
+||=+|+|.. .++..+++. | .+|+++ |.++.-++.+++-|...++....+... .....+|+|+..-..
T Consensus 35 ~vli~GaG~vG~~~~~~a~~~g~~~vv~~--~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~-- 110 (172)
T d1h2ba2 35 YVAIVGVGGLGHIAVQLLKVMTPATVIAL--DVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGS-- 110 (172)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCCCEEEEE--ESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCC--
T ss_pred EEEEeCCChHHHHHHHHHHhhcCcccccc--cchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCc--
Confidence 3588998765 455666654 5 466766 556777888888776555543221111 123569999874222
Q ss_pred cCCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 351 WIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 351 ~~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
...+....+.|++||.+++..+
T Consensus 111 -------~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 111 -------QATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp -------HHHHHHGGGGEEEEEEEEECCC
T ss_pred -------chHHHHHHHHHhCCCEEEEEeC
Confidence 2357888999999999998764
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.25 E-value=0.25 Score=43.84 Aligned_cols=85 Identities=11% Similarity=0.064 Sum_probs=53.5
Q ss_pred EEEccccc-C-CCCCCceeEEEEccchh----hcCC----chhHHHHHHHHHHhccCCcEEEEeecccc-----CcCcHH
Q 043503 324 MHISVSQR-L-PFFENTLDIVHSMHVLS----NWIP----DSMLEFTLYDIYRLLRPGGIFWLDRFFCF-----GSQLNE 388 (430)
Q Consensus 324 ~~~~d~~~-l-pf~d~sfDlV~~~~~L~----~~~~----d~~l~~~L~ei~RvLrPGG~lvl~~f~~~-----~~~~~~ 388 (430)
++++|+.. + .++++++|+|++..... .|-. .+.+...+.++.|+|+|||.+++..-... ......
T Consensus 7 ~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~~ 86 (279)
T d1eg2a_ 7 YDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLIS 86 (279)
T ss_dssp EEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHHH
T ss_pred EEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchhh
Confidence 45666533 2 26699999999965431 1111 12356788999999999999988432111 112345
Q ss_pred HHHHHHHHcCCEEEEEEecc
Q 043503 389 TYVPMLDRIGFKKLRWNVGM 408 (430)
Q Consensus 389 ~~~~ll~~~Gfk~l~~~~~~ 408 (430)
.+..+....||....+..-.
T Consensus 87 ~~~~~~~~~~~~~~~~i~~~ 106 (279)
T d1eg2a_ 87 IISHMRQNSKMLLANLIIWN 106 (279)
T ss_dssp HHHHHHHHCCCEEEEEEEEE
T ss_pred HHHHHHhccCceeeeeeeec
Confidence 56678888999976655433
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.83 E-value=0.3 Score=45.59 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=38.8
Q ss_pred ccEEEEEcCCccHHHHHHHHc-C-CEEEEEecCCChhHHHHHHhc---CCeeEEEccccc
Q 043503 277 IRIGLDIGGGTGTFAARMRER-N-VTIITTSLNLDGPFNSFIASR---GLISMHISVSQR 331 (430)
Q Consensus 277 ir~VLDIGcGtG~~a~~La~~-g-~~Vv~vdiD~s~~~le~a~~r---g~i~~~~~d~~~ 331 (430)
..+|||||.|.|.++..|.++ + .+|+++ +.+..+.+...+. +.+.++.+|+-.
T Consensus 44 ~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~i--E~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 44 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLL--EKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEE--CCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCeEEEECCCCCHHHHHHHhcCCCCEEEEE--ECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 346799999999999999987 3 478888 5556666555443 457788777643
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=89.82 E-value=2 Score=38.34 Aligned_cols=127 Identities=13% Similarity=0.128 Sum_probs=74.4
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCC-CCceeEEEEccchhhc------
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFF-ENTLDIVHSMHVLSNW------ 351 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~-d~sfDlV~~~~~L~~~------ 351 (430)
+|||+=||.|.+...+.+.|++++.. .|+++...+.-+.+-.-.++.+|...+... -...|+++....=-.+
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~~~~~a-~e~d~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~dll~~g~PCq~fS~ag~~ 80 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGFRIICA-NEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPCQSWSEGGSL 80 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTCEEEEE-EECCHHHHHHHHHHCCSEEEESCTTTSCGGGSCCCSEEEECCCCTTTSSSSCC
T ss_pred eEEEeCcCcCHHHHHHHHCCCEEEEE-EeCCHHHHHHHHHHCCCCCccCChhhCCHhHcccccEEeeccccccccccccc
Confidence 36999999999999888889887732 355566666555554445677887776522 2358999984321111
Q ss_pred --CCch--hHHHHHHHHHHhccCCcEEEEee---cccc-CcCcHHHHHHHHHHcCCEEEEEEec
Q 043503 352 --IPDS--MLEFTLYDIYRLLRPGGIFWLDR---FFCF-GSQLNETYVPMLDRIGFKKLRWNVG 407 (430)
Q Consensus 352 --~~d~--~l~~~L~ei~RvLrPGG~lvl~~---f~~~-~~~~~~~~~~ll~~~Gfk~l~~~~~ 407 (430)
..+. .+-..+.++...++|.- |++.. +... .....+.+...+...||.+.-....
T Consensus 81 ~g~~d~r~~l~~~~~~~i~~~~Pk~-~~lENV~~~~~~~~~~~~~~~l~~l~~lGY~v~~~vln 143 (324)
T d1dcta_ 81 RGIDDPRGKLFYEYIRILKQKKPIF-FLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLN 143 (324)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHCCSE-EEEEEEGGGGSGGGHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccchHHHHHHHHHhhCCce-eeccccccccccccchhhHHHHhHHhhCCCccceeeee
Confidence 1221 12223444666778863 33322 2211 1123455667778889986655443
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=89.52 E-value=0.38 Score=43.53 Aligned_cols=69 Identities=12% Similarity=-0.040 Sum_probs=48.7
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhH---HHHHHhc------------CCeeEEEccccc-CCCCCCceeE
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPF---NSFIASR------------GLISMHISVSQR-LPFFENTLDI 341 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~---le~a~~r------------g~i~~~~~d~~~-lpf~d~sfDl 341 (430)
.+|||.-||.|..+..++..|++|+++ +-++.+ ++.+.++ ..+.++.+|... +.-....||+
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~~V~~i--Er~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~Dv 167 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGCRVRML--ERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEE--ECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred CEEEECCCcccHHHHHHHhCCCEEEEE--ccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCE
Confidence 357999999999999999999999998 555543 2222111 127888888643 4334567999
Q ss_pred EEEccch
Q 043503 342 VHSMHVL 348 (430)
Q Consensus 342 V~~~~~L 348 (430)
|..-..+
T Consensus 168 IYlDPMF 174 (250)
T d2oyra1 168 VYLDPMF 174 (250)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9995444
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=89.50 E-value=0.65 Score=38.91 Aligned_cols=90 Identities=7% Similarity=-0.030 Sum_probs=61.1
Q ss_pred EEEEEcCC--ccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC------CCCCceeEEEEccchh
Q 043503 279 IGLDIGGG--TGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP------FFENTLDIVHSMHVLS 349 (430)
Q Consensus 279 ~VLDIGcG--tG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp------f~d~sfDlV~~~~~L~ 349 (430)
+||=.|++ .|..++.+++. |++|+++ .-++.-.+.+++.|.-.++....+... ...+.+|+|+..-.
T Consensus 32 ~VlV~ga~ggvG~~aiqlak~~Ga~vi~~--~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-- 107 (182)
T d1v3va2 32 TVLVSAAAGAVGSVVGQIAKLKGCKVVGA--AGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG-- 107 (182)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEE--ESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC--
T ss_pred EEEEEeCCCchhHHHHHHHHccCCEEEEe--CCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC--
Confidence 34766654 56788888877 9999988 445667788888887555443222211 23456999998321
Q ss_pred hcCCchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 350 NWIPDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 350 ~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
...+.+..++|+|||.+++....
T Consensus 108 --------~~~~~~~~~~l~~~G~~v~~G~~ 130 (182)
T d1v3va2 108 --------GEFLNTVLSQMKDFGKIAICGAI 130 (182)
T ss_dssp --------HHHHHHHGGGEEEEEEEEECCCG
T ss_pred --------chhhhhhhhhccCCCeEEeecce
Confidence 23678999999999999986543
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.48 E-value=1.8 Score=39.07 Aligned_cols=125 Identities=12% Similarity=0.177 Sum_probs=70.0
Q ss_pred EEEEEcCCccHHHHHHHHcCC--EEE-EEecCCChhHHHHHHhc-CCeeEEEcccccCC---CCCCceeEEEEccchhhc
Q 043503 279 IGLDIGGGTGTFAARMRERNV--TII-TTSLNLDGPFNSFIASR-GLISMHISVSQRLP---FFENTLDIVHSMHVLSNW 351 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~--~Vv-~vdiD~s~~~le~a~~r-g~i~~~~~d~~~lp---f~d~sfDlV~~~~~L~~~ 351 (430)
+|+|+-||.|.+...+.+.|. +++ ++ |+++...+.-+.+ +...++.+|...+. ++...+|+++....=-.+
T Consensus 4 kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~--E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~f 81 (343)
T d1g55a_ 4 RVLELYSGVGGMHHALRESCIPAQVVAAI--DVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp EEEEETCTTCHHHHHHHHHTCSEEEEEEE--CCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred EEEEcCcCccHHHHHHHHcCCCCeEEEEE--ECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeecccccc
Confidence 359999999999888877675 444 45 6666666655544 33566777776654 222358999984331111
Q ss_pred C-------CchhHHHHHHHHHHhc-----cCCcEEEEeeccc-cCcCcHHHHHHHHHHcCCEEEEEEe
Q 043503 352 I-------PDSMLEFTLYDIYRLL-----RPGGIFWLDRFFC-FGSQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 352 ~-------~d~~l~~~L~ei~RvL-----rPGG~lvl~~f~~-~~~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
. .++....++.++.|++ ||. +|++...-. ......+.+...+++.||.+.-..+
T Consensus 82 S~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk-~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v~~~vl 148 (343)
T d1g55a_ 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLPK-YILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLL 148 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCCS-EEEEEEETTGGGSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cccccccccccccccccchhhhhHhhhcCCCc-eeeeeccCCcccchhhHHHHhhhhccccccceeee
Confidence 1 0111333555555554 465 444432111 1112346788899999998765443
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.59 E-value=1 Score=36.59 Aligned_cols=89 Identities=13% Similarity=0.113 Sum_probs=55.8
Q ss_pred EEEEcCCc-cHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC-----CCCCceeEEEEccchhhcC
Q 043503 280 GLDIGGGT-GTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP-----FFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 280 VLDIGcGt-G~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp-----f~d~sfDlV~~~~~L~~~~ 352 (430)
||=.|+|. |..+..+++. |.+|+++ +.++.-++++++-|...++....+... ...+.+|+|.+. +
T Consensus 31 vlv~G~G~iG~~a~~~a~~~g~~v~~~--~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~----- 102 (168)
T d1rjwa2 31 VAIYGIGGLGHVAVQYAKAMGLNVVAV--DIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTA-V----- 102 (168)
T ss_dssp EEEECCSTTHHHHHHHHHHTTCEEEEE--CSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESS-C-----
T ss_pred EEEeecccchhhhhHHHhcCCCeEecc--CCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeec-C-----
Confidence 46678776 4555666655 8888887 667778888888776444332111111 123445555442 1
Q ss_pred CchhHHHHHHHHHHhccCCcEEEEeecc
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFWLDRFF 380 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lvl~~f~ 380 (430)
-...+....+.|+|||.+++....
T Consensus 103 ----~~~~~~~a~~~l~~~G~i~~~g~~ 126 (168)
T d1rjwa2 103 ----SKPAFQSAYNSIRRGGACVLVGLP 126 (168)
T ss_dssp ----CHHHHHHHHHHEEEEEEEEECCCC
T ss_pred ----CHHHHHHHHHHhccCCceEecccc
Confidence 124688999999999999986543
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=85.95 E-value=0.7 Score=38.73 Aligned_cols=90 Identities=12% Similarity=0.137 Sum_probs=59.6
Q ss_pred EEEEc--CCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEc-c--ccc-CCCCCCceeEEEEccchhhcC
Q 043503 280 GLDIG--GGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHIS-V--SQR-LPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 280 VLDIG--cGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~-d--~~~-lpf~d~sfDlV~~~~~L~~~~ 352 (430)
||=-| .|.|.++..+++. |++|+++ .-+++-.+.+++-|.-.++.. + .+. .....+.+|+|+-. +
T Consensus 27 VLV~gaaGgVG~~avQlAk~~Ga~Viat--~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~------v 98 (167)
T d1tt7a2 27 VLVTGATGGVGGIAVSMLNKRGYDVVAS--TGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDP------V 98 (167)
T ss_dssp EEEESTTSHHHHHHHHHHHHHTCCEEEE--ESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEES------C
T ss_pred EEEeCCcchHHHHHHHHHHHcCCceEEE--ecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEec------C
Confidence 36555 5677899999887 9999987 334555677777776333322 1 111 12335679998873 1
Q ss_pred CchhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
- ...+.+..++|+|||.+++.....
T Consensus 99 g----g~~~~~~~~~l~~~G~iv~~G~~~ 123 (167)
T d1tt7a2 99 G----GKQLASLLSKIQYGGSVAVSGLTG 123 (167)
T ss_dssp C----THHHHHHHTTEEEEEEEEECCCSS
T ss_pred c----HHHHHHHHHHhccCceEEEeeccC
Confidence 1 136788999999999999876553
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=85.53 E-value=1.1 Score=37.82 Aligned_cols=90 Identities=13% Similarity=0.107 Sum_probs=59.4
Q ss_pred EEEEc--CCccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEccccc--CCCCCCceeEEEEccchhhcCCc
Q 043503 280 GLDIG--GGTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHISVSQR--LPFFENTLDIVHSMHVLSNWIPD 354 (430)
Q Consensus 280 VLDIG--cGtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~--lpf~d~sfDlV~~~~~L~~~~~d 354 (430)
||=.| +|.|.++..+++. |++|+++ .-++...+.+++-|--.++.-+... -.+....+|.|+-. +.
T Consensus 35 vlV~gasGGVG~~aiQlAk~~Ga~Via~--~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~-Vg------ 105 (177)
T d1o89a2 35 IVVTGASGGVGSTAVALLHKLGYQVVAV--SGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDT-VG------ 105 (177)
T ss_dssp EEESSTTSHHHHHHHHHHHHTTCCEEEE--ESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEES-SC------
T ss_pred EEEEEccccchHHHHHHHHHcCCCeEEE--ecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEE-cc------
Confidence 45444 4567888888887 9999987 4456667777777764444332211 12345678887641 11
Q ss_pred hhHHHHHHHHHHhccCCcEEEEeeccc
Q 043503 355 SMLEFTLYDIYRLLRPGGIFWLDRFFC 381 (430)
Q Consensus 355 ~~l~~~L~ei~RvLrPGG~lvl~~f~~ 381 (430)
...+.+..+.|+++|.++......
T Consensus 106 ---g~~~~~~l~~l~~~Griv~~G~~~ 129 (177)
T d1o89a2 106 ---DKVLAKVLAQMNYGGCVAACGLAG 129 (177)
T ss_dssp ---HHHHHHHHHTEEEEEEEEECCCTT
T ss_pred ---hHHHHHHHHHhccccceEeecccC
Confidence 246889999999999999876553
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.50 E-value=3.4 Score=34.47 Aligned_cols=91 Identities=8% Similarity=0.026 Sum_probs=54.8
Q ss_pred cEEEEEc--CCccHHHHHHHHc-CCE-EEEEecCCChhHHHHHHhcCCeeEEEcccccCC-----CCCCceeEEEEccch
Q 043503 278 RIGLDIG--GGTGTFAARMRER-NVT-IITTSLNLDGPFNSFIASRGLISMHISVSQRLP-----FFENTLDIVHSMHVL 348 (430)
Q Consensus 278 r~VLDIG--cGtG~~a~~La~~-g~~-Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp-----f~d~sfDlV~~~~~L 348 (430)
.+||=.| .|.|.++..+++. |++ |++++ +..+...+.+++-|.-.++....+.+. ..++.+|+|+-.-.
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~-~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG- 109 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGIC-GTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG- 109 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEE-SSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceeccc-chHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC-
Confidence 4467765 6889999999986 764 55442 222333344445565433333222211 12456999987321
Q ss_pred hhcCCchhHHHHHHHHHHhccCCcEEEEeec
Q 043503 349 SNWIPDSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 349 ~~~~~d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
...+....++|+|||.++....
T Consensus 110 ---------g~~~~~~~~~l~~~G~iv~~G~ 131 (187)
T d1vj1a2 110 ---------GDISNTVISQMNENSHIILCGQ 131 (187)
T ss_dssp ---------HHHHHHHHTTEEEEEEEEEC--
T ss_pred ---------chhHHHHhhhccccccEEEecc
Confidence 2357889999999999987653
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=85.35 E-value=3.8 Score=36.72 Aligned_cols=125 Identities=11% Similarity=0.062 Sum_probs=74.0
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCC-CCceeEEEEccchhhc------
Q 043503 279 IGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFF-ENTLDIVHSMHVLSNW------ 351 (430)
Q Consensus 279 ~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~-d~sfDlV~~~~~L~~~------ 351 (430)
+|||+=||.|.+...+.+.|++++.. +|+++...+.-+.+.. ....+|...+... -..+|+++....=-.+
T Consensus 13 rv~~lFsG~Gg~~~gl~~aG~~~v~a-~e~d~~a~~~~~~N~~-~~~~~Di~~~~~~~~~~~Dll~ggpPCq~fS~ag~~ 90 (327)
T d2c7pa1 13 RFIDLFAGLGGFRLALESCGAECVYS-NEWDKYAQEVYEMNFG-EKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGKQ 90 (327)
T ss_dssp EEEEETCTTTHHHHHHHHTTCEEEEE-ECCCHHHHHHHHHHHS-CCCBSCGGGSCGGGSCCCSEEEEECCCTTTCTTSCC
T ss_pred eEEEECccccHHHHHHHHCCCeEEEE-EeCCHHHHHHHHHHCC-CCCcCchhcCchhhcceeeeeecccccchhhhhhhh
Confidence 35999999999999998889987753 4666666655554421 1224666555422 2358999984321011
Q ss_pred --C--CchhHHHHHHHHHHhccCCcEEEEee---ccc-cCcCcHHHHHHHHHHcCCEEEEEEe
Q 043503 352 --I--PDSMLEFTLYDIYRLLRPGGIFWLDR---FFC-FGSQLNETYVPMLDRIGFKKLRWNV 406 (430)
Q Consensus 352 --~--~d~~l~~~L~ei~RvLrPGG~lvl~~---f~~-~~~~~~~~~~~ll~~~Gfk~l~~~~ 406 (430)
. +...+-..+.++.+.++|. +|++.. +.. ......+.+...++..||.+.....
T Consensus 91 ~g~~d~r~~l~~~~~~~i~~~kP~-~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~~vl 152 (327)
T d2c7pa1 91 KGFEDSRGTLFFDIARIVREKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVL 152 (327)
T ss_dssp CGGGSTTSCHHHHHHHHHHHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEE
T ss_pred cCCcccchhHHHHHHHHHhccCCc-EEecccchhhhhhccchhhHHhhhHHHhcCCcceeeEe
Confidence 0 1112444555666778886 344322 221 1122456778899999998665443
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=84.82 E-value=2.2 Score=33.30 Aligned_cols=101 Identities=15% Similarity=0.132 Sum_probs=58.1
Q ss_pred CccHHHHHHHH----cCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCC----CCCceeEEEEccchhhcCCchhH
Q 043503 286 GTGTFAARMRE----RNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPF----FENTLDIVHSMHVLSNWIPDSML 357 (430)
Q Consensus 286 GtG~~a~~La~----~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf----~d~sfDlV~~~~~L~~~~~d~~l 357 (430)
|.|.++..+++ .|..|+.+ |.++...+.+...+. ..+.+|...... .-...|.|++. .++...
T Consensus 7 G~G~~G~~la~~L~~~g~~vvvi--d~d~~~~~~~~~~~~-~~~~gd~~~~~~l~~a~i~~a~~vi~~------~~~~~~ 77 (134)
T d2hmva1 7 GLGRFGGSIVKELHRMGHEVLAV--DINEEKVNAYASYAT-HAVIANATEENELLSLGIRNFEYVIVA------IGANIQ 77 (134)
T ss_dssp CCSHHHHHHHHHHHHTTCCCEEE--ESCHHHHHHTTTTCS-EEEECCTTCTTHHHHHTGGGCSEEEEC------CCSCHH
T ss_pred CCCHHHHHHHHHHHHCCCeEEEe--cCcHHHHHHHHHhCC-cceeeecccchhhhccCCccccEEEEE------cCchHH
Confidence 55665555554 48898988 555666776666665 566677655331 12357877763 222123
Q ss_pred HHHHHHHHHhccCCcEEEEeeccccCcCcHHHHHHHHHHcCCEEE
Q 043503 358 EFTLYDIYRLLRPGGIFWLDRFFCFGSQLNETYVPMLDRIGFKKL 402 (430)
Q Consensus 358 ~~~L~ei~RvLrPGG~lvl~~f~~~~~~~~~~~~~ll~~~Gfk~l 402 (430)
...+..+.+-+.|...++.-- ......+.+.+.|-..+
T Consensus 78 ~~~~~~~~~~~~~~~~iiar~-------~~~~~~~~l~~~Gad~v 115 (134)
T d2hmva1 78 ASTLTTLLLKELDIPNIWVKA-------QNYYHHKVLEKIGADRI 115 (134)
T ss_dssp HHHHHHHHHHHTTCSEEEEEC-------CSHHHHHHHHHHTCSEE
T ss_pred hHHHHHHHHHHcCCCcEEeec-------ccHhHHHHHHHCCCCEE
Confidence 344555555566666665421 12456677888886543
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=84.02 E-value=0.67 Score=41.47 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=35.0
Q ss_pred cEEEEEcCCccHHHHHHHHcCCEEEEEecCCChhHHHHHHhc
Q 043503 278 RIGLDIGGGTGTFAARMRERNVTIITTSLNLDGPFNSFIASR 319 (430)
Q Consensus 278 r~VLDIGcGtG~~a~~La~~g~~Vv~vdiD~s~~~le~a~~r 319 (430)
.+|||.=||+|+.+.+..+.|-+.+|+ |+++...+.+.+|
T Consensus 252 diVlDpF~GSGTT~~AA~~lgR~~Ig~--El~~~y~~~a~~R 291 (320)
T d1booa_ 252 DLVVDIFGGSNTTGLVAERESRKWISF--EMKPEYVAASAFR 291 (320)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCEEEEE--ESCHHHHHHHHGG
T ss_pred CEEEecCCCCcHHHHHHHHcCCcEEEE--eCCHHHHHHHHHH
Confidence 468999999999999999999999998 6668888888877
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=82.52 E-value=1.5 Score=33.26 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=42.0
Q ss_pred ccEEEEEc-CCcc--HHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCCCCCCceeEEEEccch
Q 043503 277 IRIGLDIG-GGTG--TFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLPFFENTLDIVHSMHVL 348 (430)
Q Consensus 277 ir~VLDIG-cGtG--~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lpf~d~sfDlV~~~~~L 348 (430)
.+++.=|| ||+| .+|..+.++|++|.|.|...++.+.. ..+.|. .+..+..... . ...|+|+.+...
T Consensus 8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~-L~~~Gi-~v~~g~~~~~-i--~~~d~vV~S~AI 77 (96)
T d1p3da1 8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQR-LAQAGA-KIYIGHAEEH-I--EGASVVVVSSAI 77 (96)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHH-HHHTTC-EEEESCCGGG-G--TTCSEEEECTTS
T ss_pred CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhH-HHHCCC-eEEECCcccc-C--CCCCEEEECCCc
Confidence 34445555 4555 67788888899999998776665544 445675 4555433221 1 247898887655
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=82.04 E-value=12 Score=30.62 Aligned_cols=95 Identities=11% Similarity=-0.119 Sum_probs=59.0
Q ss_pred cEEEEEcCCcc-HHHHHHHHc-CC-EEEEEecCCChhHHHHHHhcCCeeEEEcccccCC-------CCCCceeEEEEccc
Q 043503 278 RIGLDIGGGTG-TFAARMRER-NV-TIITTSLNLDGPFNSFIASRGLISMHISVSQRLP-------FFENTLDIVHSMHV 347 (430)
Q Consensus 278 r~VLDIGcGtG-~~a~~La~~-g~-~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp-------f~d~sfDlV~~~~~ 347 (430)
.+||=+|||.. .++..+++. |+ +|+++ |.++.-++.+++-|-..++.....+.. ...+.+|+|+-.-.
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~--d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g 106 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGV--GTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG 106 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEE--CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeecc--CChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCC
Confidence 34688898865 455555554 65 77877 667888999999887555532211111 22456898887322
Q ss_pred hhhcCCchhHHHHHHHHHHhccC-CcEEEEeeccccC
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRP-GGIFWLDRFFCFG 383 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrP-GG~lvl~~f~~~~ 383 (430)
. ...+.+....+++ +|.+++..+...+
T Consensus 107 ~---------~~~~~~~~~~~~~~~G~~v~vG~~~~~ 134 (174)
T d1p0fa2 107 R---------IETMMNALQSTYCGSGVTVVLGLASPN 134 (174)
T ss_dssp C---------HHHHHHHHHTBCTTTCEEEECCCCCTT
T ss_pred C---------chHHHHHHHHHHHhcCceEEEEEecCc
Confidence 2 2356666666655 5999887655433
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=81.65 E-value=0.53 Score=39.32 Aligned_cols=87 Identities=15% Similarity=0.062 Sum_probs=53.9
Q ss_pred EEEEEcC--CccHHHHHHHHc-CCEEEEEecCCChhHHHHHHhcCCeeEEEc-cc-ccCCCCCCceeEEEEccchhhcCC
Q 043503 279 IGLDIGG--GTGTFAARMRER-NVTIITTSLNLDGPFNSFIASRGLISMHIS-VS-QRLPFFENTLDIVHSMHVLSNWIP 353 (430)
Q Consensus 279 ~VLDIGc--GtG~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~-d~-~~lpf~d~sfDlV~~~~~L~~~~~ 353 (430)
+||=.|+ |.|.++..+++. |++|++++ .++.-.+.+++.|.-.++.. +. ... .....+|+|+-. ..
T Consensus 30 ~VlI~ga~G~vG~~aiqlak~~G~~vi~~~--~~~~~~~~~~~lGa~~~i~~~~~~~~~-~~~~g~D~v~d~--~G---- 100 (171)
T d1iz0a2 30 KVLVQAAAGALGTAAVQVARAMGLRVLAAA--SRPEKLALPLALGAEEAATYAEVPERA-KAWGGLDLVLEV--RG---- 100 (171)
T ss_dssp EEEESSTTBHHHHHHHHHHHHTTCEEEEEE--SSGGGSHHHHHTTCSEEEEGGGHHHHH-HHTTSEEEEEEC--SC----
T ss_pred EEEEEeccccchhhhhhhhccccccccccc--ccccccccccccccceeeehhhhhhhh-hccccccccccc--cc----
Confidence 3477774 446788888876 99999884 44666677877776333221 11 111 123569999872 21
Q ss_pred chhHHHHHHHHHHhccCCcEEEEeec
Q 043503 354 DSMLEFTLYDIYRLLRPGGIFWLDRF 379 (430)
Q Consensus 354 d~~l~~~L~ei~RvLrPGG~lvl~~f 379 (430)
+ .+.+..+.|+|||.+++...
T Consensus 101 ~-----~~~~~~~~l~~~G~~v~~G~ 121 (171)
T d1iz0a2 101 K-----EVEESLGLLAHGGRLVYIGA 121 (171)
T ss_dssp T-----THHHHHTTEEEEEEEEEC--
T ss_pred h-----hHHHHHHHHhcCCcEEEEeC
Confidence 1 24577889999999987643
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=80.67 E-value=0.31 Score=41.50 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=56.7
Q ss_pred ccEEEEEcCCcc-HHHHHHHHc-CCEEEEEecCCChhHHHHHHhc--CCeeEEEcccccCCCCCCceeEEEEccchhhcC
Q 043503 277 IRIGLDIGGGTG-TFAARMRER-NVTIITTSLNLDGPFNSFIASR--GLISMHISVSQRLPFFENTLDIVHSMHVLSNWI 352 (430)
Q Consensus 277 ir~VLDIGcGtG-~~a~~La~~-g~~Vv~vdiD~s~~~le~a~~r--g~i~~~~~d~~~lpf~d~sfDlV~~~~~L~~~~ 352 (430)
..+|+=||+|.- ..++..+.+ |..|..+|. +...++..+.. +.+.....+-+.+.-.-...|+|++.-.... -
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~--~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG-~ 108 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDI--NVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPG-R 108 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTT-S
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCEEEEEeC--cHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCC-c
Confidence 346799999985 567777766 999998854 45555555433 2345554443333211235899999533211 1
Q ss_pred CchhHHHHHHHHHHhccCCcEEE
Q 043503 353 PDSMLEFTLYDIYRLLRPGGIFW 375 (430)
Q Consensus 353 ~d~~l~~~L~ei~RvLrPGG~lv 375 (430)
+ ...-+=+++.+.+|||..++
T Consensus 109 ~--aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 109 R--APILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp S--CCCCBCHHHHTTSCTTCEEE
T ss_pred c--cCeeecHHHHhhcCCCcEEE
Confidence 1 12224568999999999754
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=80.17 E-value=8.8 Score=30.80 Aligned_cols=89 Identities=18% Similarity=0.189 Sum_probs=55.0
Q ss_pred EEEEcCCcc--HHHHHHHHcCCEEEEEecCCChhHHHHHHhcCCeeEEEcccccCC--------CC--CCceeEEEEccc
Q 043503 280 GLDIGGGTG--TFAARMRERNVTIITTSLNLDGPFNSFIASRGLISMHISVSQRLP--------FF--ENTLDIVHSMHV 347 (430)
Q Consensus 280 VLDIGcGtG--~~a~~La~~g~~Vv~vdiD~s~~~le~a~~rg~i~~~~~d~~~lp--------f~--d~sfDlV~~~~~ 347 (430)
+-=||+|.. .++..|+++|+.|+.+ |.++.-.+.+.+.+.......+.+... .. -...|+|+..
T Consensus 4 iaIiGaG~~G~~~A~~l~~~G~~V~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~-- 79 (184)
T d1bg6a2 4 YAVLGLGNGGHAFAAYLALKGQSVLAW--DIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV-- 79 (184)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEE--CSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC--
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEE--ECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE--
Confidence 355788775 4677777889999988 555666666665554222111111000 00 1357998873
Q ss_pred hhhcCCchhHHHHHHHHHHhccCCcEEEE
Q 043503 348 LSNWIPDSMLEFTLYDIYRLLRPGGIFWL 376 (430)
Q Consensus 348 L~~~~~d~~l~~~L~ei~RvLrPGG~lvl 376 (430)
.+....+.++.++...++++-.+++
T Consensus 80 ----v~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 80 ----VPAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp ----SCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred ----EchhHHHHHHHHhhhccCCCCEEEE
Confidence 2222377899999999999987665
|