Citrus Sinensis ID: 043513

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400------
Protein Sequence
MQERSRILPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLEDGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNFPHNRCWIMHEYTLNASLLPQNHHSSSDCVLCRLRKNGGQSVGIKDSRKKIKNDKQVQDNDHQPAGKSNSRKRVKFEHQVNDNDQPDEPFVENHQNQYVQENQSQPLNERSPHKLLESSVKNNPEEKPPVPRTKQTLLEQIEHLAENGYPSTFEENQQQPMTEPNLHNQLELSQNHPLMEQTPSYLLKGQEENHQLAVTEQNPHHLELSDNHQNMNHTSSSNLEENQLPATEQSHDDAIYSELTDINSWVVHQLTRIDDATYPHLADDKFLVSNELVYTD
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccEEcccccccEEEEEEEEEEccccccccccEEEEEccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEEEcEcccccccccccccccccccccEEEEEccccccccccccccccccccEEEEccccccEEccccccEEEEEEEEEEEcccccccccEEEEEEEEccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccHcccccccHccccccccccccccccccHHHHHHHcccHHcccccccccc
Coil and Loop (DISEMBL)
mqersrilpvgckflpseeQLVHYYLFNkisgiptpfveyfvkdvdlydyeepwdiwkqfggpnledgedlYFFTNLkkksingsrinrkvgsgawqgedagelvlsrnsnrpigskkifryendnfphnrcwIMHEYTlnasllpqnhhsssdcvlcrlrknggqsvgikdsrkkikndkqvqdndhqpagksnsrkrvkfehqvndndqpdepfvenhqnqyvqenqsqplnersphkllessvknnpeekppvprtKQTLLEQIEHLaengypstfeenqqqpmtepnlhnqlelsqnhplmeqtpsyllkgqeenhqlavteqnphhlelsdnhqnmnhtsssnleenqlpateqshddAIYSELTDINSWVVHQLtriddatyphladdkflvsnelvytd
Flexible Loop (DISEMBL)
mqersrilpvgckflpSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLEDGEDLYFFTNLkkksingsrinrkvgsgawqgedagelvlsrnsnrpigskkifryenDNFPHNRCWIMHEYTLNASLLPQNHHSSSDCVLCRLRKNggqsvgikdsrkkikndkqvqdndhqpagksnsrkrVKFEHQVNDNDQPDEPFVENHQNQYVQENQSQPLNERSPHKLLESsvknnpeekppvpRTKQTLLEQIEHLAENGYPSTFEENQQQPMTEPNLHNQLELSQNHPLMEQTPSYLLKGQEENHQLAVTEQNPHHLELSDNHQNMNHTSSSNLEENQLPATEQSHDDAIYSELTDINSWVVHQLTRIDDatyphladdkflvsnelvytd
Low Complexity Region (SEG)
MQERSRILPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLEDGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNFPHNRCWIMHEYTLNASLLPQNHHSSSDCVLCRLRKNGGQSVGIKDSRKKIKNDKQVQDNDHQPAGKSNSRKRVKFEHQVNDNDQPDEPFVENHQNQYVQENQSQPLNERSPHKLLESSVKNNPEEKPPVPRTKQTLLEQIEHLAENGYPSTFEENQQQPMTEPNLHNQLELSQNHPLMEQTPSYLLKGQEENHQLAVTEQNPHHLELSDNHQNMNHTSSSNLEENQLPATEQSHDDAIYSELTDINSWVVHQLTRIDDATYPHLADDKFLVSNELVYTD
Disordered region (IsUnstruct)
******ILPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLEDGEDLYFFTNLKKKSINGSRINRKVGSGAWQ******LV********IGSKKIFRYENDNFPHNRCWIMHEYTLNASLLPQNHHSSSDCVLCRLR**********************************************************************************************************************************************************************************************************AIYSELTDINSWVVHQLTRIDDATYPHLADDKFLVSNELVY**
Disordered Region (DISOPRED)
*****RI**VGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLEDGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNFPHNRCWIMHEYT***************CVLCRLR***********************************************************************************************************************************************************************************************************IYSELTDINSWVVHQLTRIDDATYPHLADDKFLVSNELVYT*
Disordered Region (DISEMBL)
MQERSRILPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLEDGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNFPHNRCWIMHEYTLNASLLPQNHHSSSDCVLCRLRKNG*********************************KRVKFEHQVNDNDQPDEPFVENHQNQYVQENQSQPLNERSPHKLLESSV***********RTKQTLLEQIEHLAENGYPSTFEENQQQPMTEPNLHNQLELSQNHPLMEQTPSYLLKGQEENHQLAVTEQNPHHLELSDNHQNMNHTSSSNLEENQLPATEQSHDDAIYSELTDINSWVVHQLTRIDDATYPHLADDKFLVSNELVYTD
Disordered Region (DISPRO)
******ILPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLEDGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNFPHNRCWIMHEYTLNASLLPQNHHSSSDCVLCRLRKNGG*********************************************************************ERSPHK*LESSVKNNPEEKPPVPRTKQTLLEQIEHLAENGYPSTFEENQQQPMTEPNLHNQLELSQNHPLMEQTPSYLLKGQEENHQLAVTEQNPHHLELSDNHQNMNHTSSSNLEENQLPATEQSHDDAIYSELTDINSWVVHQLTRIDDATYPHLADDKFLVSNELVYTD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQERSRILPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLEDGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNFPHNRCWIMHEYTLNASLLPQNHHSSSDCVLCRLRKNGGQSVGIKDSRKKIKNDKQVQDNDHQPAGKSNSRKRVKFEHQVNDNDQPDEPFVENHQNQYVQENQSQPLNERSPHKLLESSVKNNPEEKPPVPRTKQTLLEQIEHLAENGYPSTFEENQQQPMTEPNLHNQLELSQNHPLMEQTPSYLLKGQEENHQLAVTEQNPHHLELSDNHQNMNHTSSSNLEENQLPATEQSHDDAIYSELTDINSWVVHQLTRIDDATYPHLADDKFLVSNELVYTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	406	2.2.26 [Sep-21-2011]
Q52QH4	318	NAC domain-containing pro	yes	no	0.384	0.490	0.356	5e-17
Q7F2L3	303	NAC domain-containing pro	no	no	0.364	0.488	0.341	3e-15
Q9SV87	341	Protein BEARSKIN1 OS=Arab	no	no	0.362	0.431	0.348	6e-15
Q8H4S4	425	NAC transcription factor	no	no	0.490	0.468	0.280	3e-14
Q93VY3	297	NAC domain-containing pro	no	no	0.359	0.491	0.331	4e-14
Q9FWX2	395	NAC domain-containing pro	no	no	0.354	0.364	0.337	5e-14
Q39013	289	NAC domain-containing pro	no	no	0.364	0.512	0.327	1e-13
Q84WP6	365	NAC domain-containing pro	no	no	0.325	0.361	0.335	1e-13
O49255	268	NAC transcription factor	no	no	0.369	0.559	0.335	2e-13
Q53NF7	329	NAC domain-containing pro	no	no	0.352	0.434	0.339	2e-13

>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 88/171 (51%), Gaps = 15/171 (8%)

Query: 8   LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLED 67
           LP G +F P++E+LV +YL  K++  P P     + +VDLY  + PWD+ ++     L  
Sbjct: 21  LPPGFRFHPTDEELVVHYLCRKVARQPLPVP--IIAEVDLYKLD-PWDLPEK----ALFG 73

Query: 68  GEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNF 127
            ++ YFFT   +K  NGSR NR  G G W+   A + V  + S R +G KK   + +   
Sbjct: 74  RKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPVAPKGSARTVGIKKALVFYSGKA 133

Query: 128 PHN--RCWIMHEYTL-NASLLPQNHHSS---SDCVLCRL--RKNGGQSVGI 170
           P      WIMHEY L +A   P     S    + VLCRL  +KN  + V +
Sbjct: 134 PRGVKTDWIMHEYRLADADRAPGGKKGSQKLDEWVLCRLYNKKNNWEKVKL 184

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7F2L3|NAC48_ORYSJ NAC domain-containing protein 48 OS=Oryza sativa subsp. japonica GN=NAC48 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 83/164 (50%), Gaps = 16/164 (9%)

Query: 8   LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLED 67
           LP G +F P++E+LV +YL  + +G+P       + ++DLY ++ PW + +      L  
Sbjct: 9   LPPGFRFHPTDEELVMHYLCRRCAGLP--IAVPIIAEIDLYKFD-PWQLPRM----ALYG 61

Query: 68  GEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNF 127
            ++ YFF+   +K  NGSR NR  GSG W+   A + V    S +P+  KK   +     
Sbjct: 62  EKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPV---GSPKPVAIKKALVFYAGKA 118

Query: 128 PHNRC--WIMHEYTL---NASLLPQNHHSSSDCVLCRL-RKNGG 165
           P      WIMHEY L   + S   +N     D VLCR+  K GG
Sbjct: 119 PKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKGG 162

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SV87|BRN2_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 83/155 (53%), Gaps = 8/155 (5%)

Query: 8   LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLED 67
           +P G +F P++E+L+HYYL  KIS     F    +++VDL +  EPWD+ ++    +   
Sbjct: 9   VPPGFRFHPTDEELLHYYLKKKIS--YQKFEMEVIREVDL-NKLEPWDLQERCKIGSTPQ 65

Query: 68  GEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNF 127
            E  YFF++  +K   GSR NR   +G W+     + +  RNS + IG +K   +     
Sbjct: 66  NE-WYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCI--RNSYKKIGMRKTLVFYKGRA 122

Query: 128 PHNRC--WIMHEYTLNASLLPQNHHSSSDCVLCRL 160
           PH +   WIMHEY L  +  PQ + S    V+CR+
Sbjct: 123 PHGQKTDWIMHEYRLEDADDPQANPSEDGWVVCRV 157

Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 22/221 (9%)

Query: 8   LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQ--FGGPNL 65
           LP G +F P++E+LV +YL  K + +P P     + +VDLY ++ PWD+ ++  FG    
Sbjct: 29  LPPGFRFHPTDEELVVHYLKKKAASVPLPVT--IIAEVDLYKFD-PWDLPEKANFGE--- 82

Query: 66  EDGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNR-PIGSKKIFRYEN 124
              ++ YFF+   +K  NG+R NR   SG W+     + ++S  S R  +G KK   +  
Sbjct: 83  ---QEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMSSGSTREKVGVKKALVFYR 139

Query: 125 DNFPHN--RCWIMHEYTLNASLLPQNHHSSSDCVLCRLRKNGGQSVGIKDSRKKIKNDKQ 182
              P      WIMHEY L  +       SSS   +   R+      G       ++ D  
Sbjct: 140 GKPPKGVKTNWIMHEYRLTDT-------SSSAAAVATTRRPPPPITGGSKGAVSLRLDDW 192

Query: 183 VQDNDHQPAGKSNSRKR-VKFEHQVNDNDQPDEPFVENHQN 222
           V    ++   K+ + +R ++ E  V D      P  + H  
Sbjct: 193 VLCRIYKKTNKAGAGQRSMECEDSVEDAVAAYAPSSQQHAT 233

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 11/157 (7%)

Query: 8   LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLED 67
           LP G +F P++E+L+  YL  K++G    F    + D+DLY ++ PWD+  +     L  
Sbjct: 14  LPPGFRFYPTDEELLVQYLCRKVAGYH--FSLQVIGDIDLYKFD-PWDLPSK----ALFG 66

Query: 68  GEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNF 127
            ++ YFF+   +K  NGSR NR  GSG W+     +++ +    R +G KK   +     
Sbjct: 67  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITA--DGRRVGIKKALVFYAGKA 124

Query: 128 PHNRC--WIMHEYTLNASLLPQNHHSSSDCVLCRLRK 162
           P      WIMHEY L             D VLCR+ K
Sbjct: 125 PKGTKTNWIMHEYRLIEHSRSHGSSKLDDWVLCRIYK 161

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score = 79.3 bits (194), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 16/160 (10%)

Query: 8   LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEY-FVKDVDLYDYEEPWDIWKQFGGPNLE 66
           +P G +F P++E+LV YYL  K++   +  +E  F+KD+DLY  E PWD+ ++      E
Sbjct: 7   VPPGFRFHPTDEELVDYYLRKKVA---SKRIEIDFIKDIDLYKIE-PWDL-QELCKIGHE 61

Query: 67  DGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDN 126
           +  D YFF++  KK   G+R NR   +G W+     + +  R+S   IG +K   +    
Sbjct: 62  EQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHS--LIGMRKTLVFYKGR 119

Query: 127 FPHNRC--WIMHEYTL--NASLLPQNHHSSSDCVLCRLRK 162
            P+ +   WIMHEY L  + +  PQ        V+CR+ K
Sbjct: 120 APNGQKSDWIMHEYRLETDENGTPQ----EEGWVVCRVFK 155

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39013|NAC2_ARATH NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 20/168 (11%)

Query: 8   LPVGCKFLPSEEQLVHYYLFNKISG--IPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNL 65
           LP G +F P++E+LV +YL  K +   I  P +     ++DLY Y+ PW++     G  L
Sbjct: 7   LPPGFRFHPTDEELVMHYLCRKCASQSIAVPIIA----EIDLYKYD-PWEL----PGLAL 57

Query: 66  EDGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYEND 125
              ++ YFF+   +K  NGSR NR  GSG W+   A + +      +P+G KK   +   
Sbjct: 58  YGEKEWYFFSPRDRKYPNGSRPNRSAGSGYWKATGADKPI---GLPKPVGIKKALVFYAG 114

Query: 126 NFPHNRC--WIMHEYTL----NASLLPQNHHSSSDCVLCRLRKNGGQS 167
             P      WIMHEY L     +    +N     D VLCR+    G +
Sbjct: 115 KAPKGEKTNWIMHEYRLADVDRSVRKKKNSLRLDDWVLCRIYNKKGAT 162

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WP6|NAC43_ARATH NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 8/140 (5%)

Query: 8   LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLED 67
           +P G +F P+EE+L+ YYL  K++ I        ++DVDL +  EPWDI ++        
Sbjct: 16  VPPGFRFHPTEEELLQYYLRKKVNSIEIDL--DVIRDVDL-NKLEPWDI-QEMCKIGTTP 71

Query: 68  GEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNF 127
             D YFF++  KK   G+R NR   +G W+     +++ S  + R IG +K   +     
Sbjct: 72  QNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYS--NGRRIGMRKTLVFYKGRA 129

Query: 128 PHNRC--WIMHEYTLNASLL 145
           PH +   WIMHEY L+ +++
Sbjct: 130 PHGQKSDWIMHEYRLDDNII 149

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulates the secondary cell wall lignification of other tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|O49255|NAC29_ARATH NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 17/167 (10%)

Query: 8   LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLED 67
           LP G +F P++E+L+ YYL N+    P P     + +VD+Y ++ PW + ++      E 
Sbjct: 9   LPPGFRFHPTDEELIVYYLRNQTMSKPCPVS--IIPEVDIYKFD-PWQLPEK-----TEF 60

Query: 68  GE-DLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDN 126
           GE + YFF+  ++K  NG R NR   SG W+     + + S +SN  +G KK   +    
Sbjct: 61  GENEWYFFSPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSSN--VGVKKALVFYKGR 118

Query: 127 FPHN--RCWIMHEYTLNASLLPQNHHSSS----DCVLCRLRKNGGQS 167
            P      WIMHEY L+ S       + S    + VLCR+ K  G S
Sbjct: 119 PPKGIKTDWIMHEYRLHDSRKASTKRNGSMRLDEWVLCRIYKKRGAS 165

May function in the transition between active cell division and cell expansion.

Arabidopsis thaliana (taxid: 3702)

>sp|Q53NF7|NAC71_ORYSJ NAC domain-containing protein 71 OS=Oryza sativa subsp. japonica GN=NAC71 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 80/165 (48%), Gaps = 22/165 (13%)

Query: 8   LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLED 67
           LP G +F P++++LV YYL  K  G+  P     + +VDLY +  PWD+ ++  G   E 
Sbjct: 9   LPPGFRFHPTDDELVMYYLCRKCGGL--PLAAPVIAEVDLYKF-NPWDLPERAMGGEKE- 64

Query: 68  GEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNF 127
               YFF+   +K  NG R NR  G+G W+   A + V    S R +  KK   +     
Sbjct: 65  ---WYFFSPRDRKYPNGQRPNRAAGTGYWKATGADKPV---GSPRAVAIKKALVFYAGKP 118

Query: 128 PHN--RCWIMHEYTL-------NASLLPQNHHSS---SDCVLCRL 160
           P      WIMHEY L        A  L ++ H++    D VLCR+
Sbjct: 119 PKGVKTNWIMHEYRLADVDRSAAARKLSKSSHNALRLDDWVLCRI 163

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	406
255545410	363	transcription factor, putative [Ricinus	0.485	0.542	0.397	5e-28
255584644	376	NAC domain-containing protein, putative	0.371	0.401	0.458	8e-28
449442783	301	PREDICTED: NAC domain-containing protein	0.448	0.604	0.403	1e-26
357512399	210	NAC domain-containing protein [Medicago	0.359	0.695	0.407	1e-26
449448878	306	PREDICTED: NAC domain-containing protein	0.450	0.598	0.4	1e-26
357439789	325	NAC domain protein [Medicago truncatula]	0.357	0.446	0.409	6e-26
255580284	508	transcription factor, putative [Ricinus	0.798	0.637	0.291	7e-26
449457267	211	PREDICTED: NAC domain-containing protein	0.487	0.938	0.368	3e-24
255577787	316	conserved hypothetical protein [Ricinus	0.379	0.487	0.411	3e-24
255577785	328	transcription factor, putative [Ricinus	0.379	0.469	0.423	5e-24

>gi|255545410|ref|XP_002513765.1| transcription factor, putative [Ricinus communis] gi|223546851|gb|EEF48348.1| transcription factor, putative [Ricinus communis]

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/229 (39%), Positives = 122/229 (53%), Gaps = 32/229 (13%)

Query: 8   LPVGCKFLPSEEQLVHYYLFNKISGI----PTPFVEYFVKDVDLYDYEEPWDIWKQFGGP 63
           + VG +F P +E+L+ YYL +KI+ +    P P     VKD DLY   EPW+IW  FGG 
Sbjct: 7   MQVGVRFRPLDEELLMYYLSHKINNLSLPNPCP-----VKDCDLYGKNEPWEIWDYFGGQ 61

Query: 64  NLEDGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYE 123
           NL D E LYFFT LK+KS + SRI R VG+G W G+ +G+ VL R + + IG  K F Y+
Sbjct: 62  NLMDVEFLYFFTQLKRKSSSSSRILRTVGTGTWHGDTSGKPVLDRKTKKVIGLIKKFHYK 121

Query: 124 NDNFPHNRCWIMHEYTLNASLLPQNHHSSSDCVLCRLRKNGGQSVGIKDSRKKIKNDKQV 183
                HN  W+M EY+L           SSDCVLC L+ N     G K +R + +    +
Sbjct: 122 KPKSAHNGGWLMREYSLVG--------QSSDCVLCCLKMN---KSGEKRNRLEAETKDYI 170

Query: 184 QDNDHQPAGKSNSRKRVKFEHQVNDNDQPDEPFVENHQNQYVQENQSQP 232
             ND      ++  KR+K +H V D         E   NQ V+ N  +P
Sbjct: 171 IYNDDVA---NDVSKRLKTQHHVAD---------EVRGNQRVEINNIEP 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584644|ref|XP_002533045.1| NAC domain-containing protein, putative [Ricinus communis] gi|223527164|gb|EEF29335.1| NAC domain-containing protein, putative [Ricinus communis]

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 100/168 (59%), Gaps = 17/168 (10%)

Query: 1   MQERSRILPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQF 60
           MQ+    +PVG +F P++ +LV YYLFNK++G   P     V D +LY  +EP  +W++F
Sbjct: 1   MQQLKDQIPVGYRFNPTDCELVGYYLFNKLNGCLLPIDNMLVADTNLYGKDEPLQLWEKF 60

Query: 61  GG--PNLEDGEDLYFFTNLKKKSINGSRINRKVGSGA-WQGEDAGELV-LSRNSNRPI-G 115
           GG      DGE +Y FT LKKK   GSRI R VG+G  W G DAG+ V +  N  + I G
Sbjct: 61  GGNCSFYSDGE-IYLFTKLKKK---GSRILRSVGAGGTWHGVDAGKPVRIKTNRGQLIEG 116

Query: 116 SKKIFRYENDNFPHNRCWIMHEYTLNASLLPQNHHSSSDCVLCRLRKN 163
           +KK F Y N N  H+ CWIMHE++L           S D VLCRL+KN
Sbjct: 117 TKKCFSYRNPNSIHDGCWIMHEFSL--------FDISYDWVLCRLKKN 156

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442783|ref|XP_004139160.1| PREDICTED: NAC domain-containing protein 68-like [Cucumis sativus] gi|449485396|ref|XP_004157155.1| PREDICTED: NAC domain-containing protein 68-like [Cucumis sativus]

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/213 (40%), Positives = 125/213 (58%), Gaps = 31/213 (14%)

Query: 10  VGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLEDGE 69
           VG KF P+++QL+HY L  KI G   P+ +  V D DLY   EPW+IW+ FGG    DGE
Sbjct: 20  VGLKFRPTDQQLLHY-LHCKIYG--QPYFQGAVFDFDLYGGVEPWEIWQSFGGI---DGE 73

Query: 70  DLYFFTNLKKKSIN----GSRINRKVG--SGAWQGED-AGELVLSRNSNRPIGSKKIFRY 122
           DLYFFT LK+ + N     + +NRK+G  +G W GE+ A  + ++ N    IG +K FRY
Sbjct: 74  DLYFFTKLKRSTTNCGNLSTHVNRKIGLVNGTWSGENSASPIYVNENCEEIIGYRKRFRY 133

Query: 123 ENDNF-PHNRCWIMHEYTLNASLLPQNHHSSSDCVLCRLRKNGGQSVGIKDSRKKIKNDK 181
           EN++   H+  WIMHEY+++   L +     S+ VLCR+RKN       +  RK +    
Sbjct: 134 ENESLEEHHGEWIMHEYSMHQRYL-RCEGVDSNYVLCRMRKNE------RVKRKLL---- 182

Query: 182 QVQDNDHQPAGKSNSRKRVKFEHQVNDNDQPDE 214
           ++Q    QP     ++KR+K  H ++DN++ DE
Sbjct: 183 EIQGEAKQP-----NKKRIKAPH-ISDNERCDE 209

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512399|ref|XP_003626488.1| NAC domain-containing protein [Medicago truncatula] gi|355501503|gb|AES82706.1| NAC domain-containing protein [Medicago truncatula]

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 99/152 (65%), Gaps = 6/152 (3%)

Query: 14  FLPSEEQLVHYYLFNKISGIPTPFVEYF-VKDVDLYD-YEEPWDIWKQFGGPNLEDGEDL 71
           F P++++L+  +L+N+I   P P   Y  + D +L+   + PW+IW++F   +   G+DL
Sbjct: 11  FTPTDDELIRSFLYNRIHNNPVP--NYITILDYELFGIVKNPWEIWEEFAPSHSYCGKDL 68

Query: 72  YFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNFPHNR 131
           YFFT LKKKS    R+ R +GSG W+GED G+ ++++ +N+ +G KK FR+   N  H+ 
Sbjct: 69  YFFTTLKKKSATSKRLIRTIGSGTWEGEDTGKGIVAKETNKVLGIKKRFRFGKSNTFHDG 128

Query: 132 CWIMHEYTLNASLLPQNHHSSSDCVLCRLRKN 163
            WI+HEY L+ SL+  N+  +++ VLCR RKN
Sbjct: 129 AWILHEYNLDKSLI--NNTLANNYVLCRFRKN 158

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448878|ref|XP_004142192.1| PREDICTED: NAC domain-containing protein 68-like [Cucumis sativus] gi|449516019|ref|XP_004165045.1| PREDICTED: NAC domain-containing protein 68-like [Cucumis sativus]

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/205 (40%), Positives = 121/205 (59%), Gaps = 22/205 (10%)

Query: 10  VGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLEDGE 69
           VG KF P+++QL+HY L  KI G   P+ +  V D DLY   EPW+IW+ FGG    DGE
Sbjct: 16  VGVKFRPTDQQLLHY-LHCKIYG--QPYFQGAVFDFDLYGGVEPWEIWQSFGGI---DGE 69

Query: 70  DLYFFTNLKKKSIN----GSRINRKVG--SGAWQGED-AGELVLSRNSNRPIGSKKIFRY 122
           DLYFFT LK+ + N     + INRK+G  +G W GE+ A  + ++++  + IG +K FRY
Sbjct: 70  DLYFFTKLKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNKDHEQIIGYRKRFRY 129

Query: 123 ENDNF-PHNRCWIMHEYTLNASLLPQNHHSSSDCVLCRLRKNGGQSVG------IKDSRK 175
           EN++   H+  WIMHEY+L+   L +      + VLCR+RKN            +K S K
Sbjct: 130 ENESLEEHHGEWIMHEYSLHPDYL-RCEGVDPNYVLCRIRKNQRAKRKLETESELKQSNK 188

Query: 176 KIKNDKQVQDNDHQPAGKSNSRKRV 200
           K    +++ +N+ +P  K+ ++KR 
Sbjct: 189 KRMKVREISNNE-RPKAKTKTKKRC 212

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439789|ref|XP_003590172.1| NAC domain protein [Medicago truncatula] gi|355479220|gb|AES60423.1| NAC domain protein [Medicago truncatula]

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 61/149 (40%), Positives = 98/149 (65%), Gaps = 4/149 (2%)

Query: 16  PSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEE-PWDIWKQFGGPNLEDGEDLYFF 74
           P++++L+  +L+NKI   P P     + + DL+   + PW+IW++FG  N   G+DLYFF
Sbjct: 13  PTDDELLQQFLYNKIHNKPLP-NHITILEHDLFGTAKNPWEIWEEFGTSNSNRGKDLYFF 71

Query: 75  TNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNFPHNRCWI 134
           T LKKKS   SR+ R +G G W+GED+G+ + +++ N+ +G KK FR+E  +   +  WI
Sbjct: 72  TTLKKKSATSSRVVRTIGLGRWEGEDSGKNIFAKDKNQILGMKKRFRFEKSDTSQDGGWI 131

Query: 135 MHEYTLNASLLPQNHHSSSDCVLCRLRKN 163
           +HEY+L+ SL+  ++   ++ VLCR RKN
Sbjct: 132 LHEYSLHNSLI--SNPLDNNYVLCRFRKN 158

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580284|ref|XP_002530971.1| transcription factor, putative [Ricinus communis] gi|223529447|gb|EEF31406.1| transcription factor, putative [Ricinus communis]

 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 174/387 (44%), Gaps = 63/387 (16%)

Query: 3   ERSRILPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGG 62
           + + ILP G +F P++++LV +YL N+++  P    +YF+ ++D+Y   EPW IW   G 
Sbjct: 8   QEALILPPGYRFDPTDQELVLHYLLNRVARKPLS-CQYFISEIDIYGDMEPWQIWDSLGK 66

Query: 63  PNLEDGEDLYFFTNLKKKSINGSRINRKVGS--GAWQGEDAG-ELVLSRNSNRPIGSKKI 119
               D + LY FT LKK++ NGS I R++GS  G+W GED+G E  L    N    ++K 
Sbjct: 67  A---DNDVLYVFTPLKKRAANGSTILRRIGSNGGSWHGEDSGKEFKL----NGVKWTQKR 119

Query: 120 FRYENDNF-PHNRCWIMHEYTLNASLLPQNHHSSSD----CVLCRLRKNGGQSVGIKDSR 174
           FRYEN    PH+  W+M EY+L+ SL+ +     +D     VLCR++KN      IK SR
Sbjct: 120 FRYENRKCKPHDGAWLMQEYSLDQSLVNKIKEKRNDDNEIIVLCRIKKN----ERIKKSR 175

Query: 175 KKIKNDKQV--QDN--DHQPAGKSNSRKRVKFEHQVNDNDQPDEPFVENHQNQYVQENQS 230
           +      +    DN  D          KR++ +H V++N +     + N     V E   
Sbjct: 176 QSEGGGDEALYADNGVDRTAEASKIGFKRLRIDHFVSENQEVQRKTLTNDGLFSVMEEIR 235

Query: 231 QPLN----------------ERSPHKLLESSVKNNPEEKPPVPRTKQTLLEQIEHLAENG 274
            P                  +R P     +++  N      +P  ++    Q E L   G
Sbjct: 236 TPATTQQFYARDTNETVLERQRLPGDSYATAIDQN------IPENQEL---QGETLTHGG 286

Query: 275 YPSTFEENQQQPMTEP----NLHNQLELSQNHPLMEQTPSYLLKGQEENHQLAVTEQNPH 330
             S  EE      TEP     ++  +   Q  P    T  +   G        + +  P 
Sbjct: 287 LFSVMEETGTPATTEPFYSREINETVLECQRLPEDSSTNPFYTGG--------IDQTIPE 338

Query: 331 HLELSDNHQNMNHTSSSNLEENQLPAT 357
           + EL  N  NM+   +  +E+  LPAT
Sbjct: 339 NQELQGNSLNMDGLFT--MEDACLPAT 363

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457267|ref|XP_004146370.1| PREDICTED: NAC domain-containing protein 90-like [Cucumis sativus]

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/228 (36%), Positives = 120/228 (52%), Gaps = 30/228 (13%)

Query: 7   ILPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLE 66
           ++PVG  F P+EE+L+ YYL+NK+ G  TP     +  +DLY  +EP  IW+Q  G    
Sbjct: 5   LIPVGYIFCPTEEELLGYYLYNKVLGGQTP--PLVLPVIDLYT-QEPSQIWQQCRGV--- 58

Query: 67  DGEDLYFFTNLKKKSINGSRINRKVGS--GAWQGEDAGELVLSRN-SNRPIGSKKIFRYE 123
           D +D+YFFT L+KK    SRI RK+GS  G W GE+  + V S    N  +G+ K FRYE
Sbjct: 59  DNQDIYFFTTLQKKK---SRIIRKIGSNGGTWSGENKPQQVFSSIIDNLLLGTMKRFRYE 115

Query: 124 NDNFPHNRCWIMHEYTLNASLLPQNHHSSSDCVLCRLRKNGGQSVGIKDSRKKIKNDKQV 183
                 +  WIM+EYTLN S++P+     S  VLC +RK            K +K++K V
Sbjct: 116 KSQVKEDCTWIMYEYTLNPSIVPEGLVHDSY-VLCMIRK------------KIVKSEKMV 162

Query: 184 QDNDHQPAGKS-----NSRKRVKFEHQVNDNDQPDEPFVENHQNQYVQ 226
             ++ + A  S      + KR+K + +   + Q D          YVQ
Sbjct: 163 MASNKRRAMTSMHVDNQNHKRMKLQEEAVVDSQKDCCIDATTIGWYVQ 210

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577787|ref|XP_002529768.1| conserved hypothetical protein [Ricinus communis] gi|223530766|gb|EEF32634.1| conserved hypothetical protein [Ricinus communis]

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 96/170 (56%), Gaps = 16/170 (9%)

Query: 1   MQERSRILPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDV-DLYDYEEPWDIWKQ 59
           M +    LP GC+F P++E+LV  YLF K   +    VE  +  V DLY  +EPW++W Q
Sbjct: 1   MDQFLATLPTGCRFSPTDEELVAMYLFKKTKNLNLSDVENMIVPVCDLYGDKEPWELWDQ 60

Query: 60  FGGPNLEDGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGE---LVLSRNSNRPI-- 114
           F    L    DLYFFT LKKK    SRI+R+VG G W GE+  E   ++L   S + +  
Sbjct: 61  FSQNQLFTNGDLYFFTELKKKP-KSSRISRRVGKGTWHGENKREPVNVLLDVGSAKQLMI 119

Query: 115 -GSKKIFRYENDNFPHNRCWIMHEYTLNASLLPQNHHSSSDCVLCRLRKN 163
             +KK F Y N N  H+  WI+HE++L+        + S++ VLCRLR N
Sbjct: 120 QATKKRFNYRNQNSAHHCRWILHEFSLD--------NVSTNWVLCRLRNN 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577785|ref|XP_002529767.1| transcription factor, putative [Ricinus communis] gi|223530765|gb|EEF32633.1| transcription factor, putative [Ricinus communis]

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/170 (42%), Positives = 98/170 (57%), Gaps = 16/170 (9%)

Query: 1   MQERSRILPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDV-DLYDYEEPWDIWKQ 59
           M++    LP GC+F P++E+LV  YLF K + +    VE  V  V DLY  +EPW++W Q
Sbjct: 1   MEQFLATLPSGCRFKPTDEELVAIYLFKKTNNLNLSDVENMVVPVCDLYGDKEPWELWDQ 60

Query: 60  FGGPNLEDGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGE----LVLSRNSNRPI- 114
           F    L    DL+FFT LKKK    SRI R+VG G W GE+ GE    LV   N+ + + 
Sbjct: 61  FAQNQLFINGDLFFFTELKKKP-KSSRILRRVGKGTWHGENKGEPVNVLVDVGNAKQLMI 119

Query: 115 -GSKKIFRYENDNFPHNRCWIMHEYTLNASLLPQNHHSSSDCVLCRLRKN 163
             +KK F Y N N  H+  WI+HE++L+        + S++ VLCRLR N
Sbjct: 120 QATKKRFSYRNQNSAHHCRWILHEFSLD--------NVSTNWVLCRLRNN 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	406
TAIR|locus:2179877	252	NAC083 "NAC domain containing	0.362	0.583	0.358	6.9e-17
TAIR|locus:2016049	324	VND7 "vascular related NAC-dom	0.699	0.876	0.295	8.3e-17
TAIR|locus:2122804	341	NAC070 "NAC domain containing	0.539	0.642	0.285	1.2e-16
TAIR|locus:2202028	395	NAC007 "NAC 007" [Arabidopsis	0.359	0.369	0.329	2.1e-16
TAIR|locus:2167923	348	NAC101 "NAC-domain protein 101	0.778	0.908	0.265	2.4e-16
TAIR|locus:2089764	246	NAC057 "NAC domain containing	0.366	0.605	0.366	1.5e-15
TAIR|locus:2019833	371	SMB "SOMBRERO" [Arabidopsis th	0.512	0.560	0.281	1.6e-15
TAIR|locus:2204685	253	NAC032 "NAC domain containing	0.399	0.640	0.335	1.9e-15
TAIR|locus:2051053	268	NAC041 "NAC domain containing	0.435	0.660	0.271	1.9e-15
TAIR|locus:2075835	451	NAC052 "NAC domain containing	0.677	0.609	0.288	2.3e-15

TAIR|locus:2179877 NAC083 "NAC domain containing protein 83" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 6.9e-17, P = 6.9e-17
 Identities = 58/162 (35%), Positives = 87/162 (53%)

Query:     8 LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLED 67
             LP G +F P++E+LV  YL  K+   P P     + + D+    +PWD+     G NLE 
Sbjct:    14 LPPGFRFHPTDEELVVQYLKRKVCSSPLP--ASIIPEFDVCR-ADPWDL----PG-NLE- 64

Query:    68 GEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNF 127
              ++ YFF+  + K  NG+R NR  GSG W+     + V++   N+ +G KK   +     
Sbjct:    65 -KERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKRVVTSRGNQIVGLKKTLVFYKGKP 123

Query:   128 PH-NRC-WIMHEYTLNASLLPQNHHSSSDCVLCR--LRKNGG 165
             PH +R  WIMHEY L++S  P +   + + VLCR  L+K  G
Sbjct:   124 PHGSRTDWIMHEYRLSSSP-PSSMGPTQNWVLCRIFLKKRAG 164

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=RCA;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010150 "leaf senescence" evidence=IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2016049 VND7 "vascular related NAC-domain protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 8.3e-17, P = 8.3e-17
 Identities = 93/315 (29%), Positives = 140/315 (44%)

Query:     8 LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLED 67
             +P G +F P+EE+LV YYL  KI+ + +  ++  V ++DLY  E PWDI  +      E+
Sbjct:     9 MPPGFRFHPTEEELVGYYLDRKINSMKSA-LDVIV-EIDLYKME-PWDIQARCK-LGYEE 64

Query:    68 GEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNF 127
               + YFF++  +K   G+R NR   +G W+     + VLS+NS   IG +K   Y     
Sbjct:    65 QNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNS--VIGMRKTLVYYKGRA 122

Query:   128 PHNRC--WIMHEYTL-NASLLPQNHHSSSDCVLCR-LRKN--GGQSVGIKDSRKKI---- 177
             P+ R   WIMHEY L N+ L P         V+CR  RK     + +G +  + ++    
Sbjct:   123 PNGRKSDWIMHEYRLQNSELAPVQEEG---WVVCRAFRKPIPNQRPLGYEPWQNQLYHVE 179

Query:   178 -KND--KQVQDNDHQPAGKSNSRKRVKFEHQVNDNDQPDEPFVENHQ--NQYVQENQSQP 232
               N+    V  N     G S+S   +      N++  P+      HQ  N  + +  S  
Sbjct:   180 SSNNYSSSVTMNTSHHIGASSSSHNLNQMLMSNNHYNPNNTSSSMHQYGNIELPQLDSPS 239

Query:   233 LNERSPHKLLESSVKNNPEEKP--PVP-RTKQTLLE-QIEHLAENGYPSTFEENQQQPMT 288
             L+        ++      EEK    V  RT  TLLE Q+ H   N     FE     P  
Sbjct:   240 LSPSLGTNKDQNESFEQEEEKSFNCVDWRTLDTLLETQVIH-PHNPNILMFETQSYNPAP 298

Query:   289 E-PNLHNQL-ELSQN 301
               P++H    E+  N
Sbjct:   299 SFPSMHQSYNEVEAN 313

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP;RCA

GO:0010089 "xylem development" evidence=RCA;IMP;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2122804 NAC070 "NAC domain containing protein 70" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 68/238 (28%), Positives = 113/238 (47%)

Query:     8 LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLED 67
             +P G +F P++E+L+HYYL  KIS     F    +++VDL   E PWD+ ++    +   
Sbjct:     9 VPPGFRFHPTDEELLHYYLKKKISY--QKFEMEVIREVDLNKLE-PWDLQERCKIGSTPQ 65

Query:    68 GEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNF 127
              E  YFF++  +K   GSR NR   +G W+     + +  RNS + IG +K   +     
Sbjct:    66 NE-WYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCI--RNSYKKIGMRKTLVFYKGRA 122

Query:   128 PHNRC--WIMHEYTLNASLLPQNHHSSSDCVLCRLRKNGGQSVGIKDSRKKIKNDKQVQD 185
             PH +   WIMHEY L  +  PQ + S    V+CR+         + +    I +   +  
Sbjct:   123 PHGQKTDWIMHEYRLEDADDPQANPSEDGWVVCRVFMKKNLFKVVNEGSSSINS---LDQ 179

Query:   186 NDHQPAGKSNSRKRVKFEHQVNDNDQPDEPFVENHQNQYVQENQSQ-PLNERSP--HK 240
             ++H  +  +++ +   F H+    D P +  V NH     + N+    L++  P  HK
Sbjct:   180 HNHDASNNNHALQARSFMHR----DSPYQ-LVRNHGAMTFELNKPDLALHQYPPIFHK 232

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0010628 "positive regulation of gene expression" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048829 "root cap development" evidence=IMP

TAIR|locus:2202028 NAC007 "NAC 007" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
 Identities = 52/158 (32%), Positives = 81/158 (51%)

Query:     8 LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEY-FVKDVDLYDYEEPWDIWKQFGGPNLE 66
             +P G +F P++E+LV YYL  K++   +  +E  F+KD+DLY  E PWD+ ++      E
Sbjct:     7 VPPGFRFHPTDEELVDYYLRKKVA---SKRIEIDFIKDIDLYKIE-PWDL-QELCKIGHE 61

Query:    67 DGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDN 126
             +  D YFF++  KK   G+R NR   +G W+     + +  R+S   IG +K   +    
Sbjct:    62 EQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSL--IGMRKTLVFYKGR 119

Query:   127 FPHNRC--WIMHEYTLNASLLPQNHHSSSDCVLCRLRK 162
              P+ +   WIMHEY L               V+CR+ K
Sbjct:   120 APNGQKSDWIMHEYRLETD--ENGTPQEEGWVVCRVFK 155

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2167923 NAC101 "NAC-domain protein 101" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 94/354 (26%), Positives = 154/354 (43%)

Query:     8 LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLED 67
             +P G +F P++E+LV YYL NK++  P   V+  +KDVDLY  E PWDI +  G    E+
Sbjct:     7 IPPGYRFHPTDEELVDYYLKNKVA-FPGMQVDV-IKDVDLYKIE-PWDIQELCGRGTGEE 63

Query:    68 GEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNF 127
              E  YFF++  KK   G+R NR  GSG W+     + + S+     +G +K   +     
Sbjct:    64 RE-WYFFSHKDKKYPTGTRTNRATGSGFWKATGRDKAIYSKQEL--VGMRKTLVFYKGRA 120

Query:   128 PHNRC--WIMHEYTLNASLLPQNHHSSSDCVLCRLRKNGGQSVGIKDSRKKIKNDKQVQD 185
             P+ +   WIMHEY L        H      V+CR  K    ++   + R  + +    + 
Sbjct:   121 PNGQKSDWIMHEYRLETDENGPPHEEG--WVVCRAFKKKLTTMNYNNPRTMMGSSSGQES 178

Query:   186 N---DHQPAGKSNSRKRVKFEHQVNDNDQPDEPFVENHQNQYVQENQSQPLNERSPHKLL 242
             N        G  N      + H + D + P   F  +  +     +Q    N++ P+ ++
Sbjct:   179 NWFTQQMDVGNGN------YYH-LPDLESP-RMFQGSSSSSLSSLHQ----NDQDPYGVV 226

Query:   243 ESSVKNNPEEKPPVPRTK-QTLLEQIEHLAENGYPSTFEENQQQPMTEPNLHNQLELSQN 301
              S++   P     + R     +    +H+      ST + +Q   +   + HN  ++   
Sbjct:   227 LSTINATPTTI--MQRDDGHVITNDDDHMIMMN-TSTGDHHQSGLLVNDD-HND-QVMDW 281

Query:   302 HPLMEQTPSYLLKGQEE---NHQLAVTEQNP--HHL--ELSDNHQNMNHTSSSN 348
               L +   S L+  QEE   N   +    N   HHL  E +    +MN +SSS+
Sbjct:   282 QTLDKFVASQLIMSQEEEEVNKDPSDNSSNETFHHLSEEQAATMVSMNASSSSS 335

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP;RCA

GO:0010089 "xylem development" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2089764 NAC057 "NAC domain containing protein 57" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 59/161 (36%), Positives = 80/161 (49%)

Query:     8 LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEY-FVKDVDLYDYEEPWDIWKQFGGPNLE 66
             LP G +F P++E+LV+YYL  KI+G     +E   + +VDLY  E PWD+ ++   P+  
Sbjct:     6 LPPGFRFHPTDEELVNYYLKRKINGQE---IELDIIPEVDLYKCE-PWDLAEKSFLPS-R 60

Query:    67 DGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDN 126
             D E  YFF    +K  NG R NR    G W+       V S++  R IG KK   Y    
Sbjct:    61 DPE-WYFFGPRDRKYPNGFRTNRATRGGYWKSTGKDRRVTSQS--RAIGMKKTLVYYKGR 117

Query:   127 FPHN-RC-WIMHEYTLNASLLPQNHHSSSDCVLCRL-RKNG 164
              P   R  W+MHEY L+               LCR+ +KNG
Sbjct:   118 APQGIRTDWVMHEYRLDDKDCDDPSSLQDSYALCRVFKKNG 158

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2019833 SMB "SOMBRERO" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
 Identities = 67/238 (28%), Positives = 109/238 (45%)

Query:     8 LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQ--FG-GPN 64
             +P G +F P+EE+L++YYL  K+S  P       +++VDL   E PW++ ++   G GP 
Sbjct:    17 VPPGFRFHPTEEELLYYYLKKKVSYEPIDLD--VIREVDLNKLE-PWELKEKCRIGSGPQ 73

Query:    65 LEDGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYEN 124
              E     YFF++  KK   G+R NR   +G W+     + +   NS++ IG +K   +  
Sbjct:    74 NE----WYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKSI-HLNSSKKIGLRKTLVFYT 128

Query:   125 DNFPHNRC--WIMHEYTLNASLLPQNHHSSSDCVLCRLRKNGGQSVGIKDSRKKIKNDKQ 182
                PH +   WIMHEY L+ S   +N       V+CR+ K      G         + +Q
Sbjct:   129 GRAPHGQKTEWIMHEYRLDDS---ENEIQEDGWVVCRVFKKKNHFRGF--------HQEQ 177

Query:   183 VQDNDHQPAGKSNSRKRVKFEHQVNDNDQPDEPFV-----ENHQNQYVQENQSQPLNE 235
              QD+ H     S +       H ++ N     P +      +H + ++      PL+E
Sbjct:   178 EQDHHHHHQYISTNNDH-DHHHHIDSNSNNHSPLILHPLDHHHHHHHIGRQIHMPLHE 234

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010455 "positive regulation of cell fate commitment" evidence=IMP

GO:0048829 "root cap development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0003002 "regionalization" evidence=IMP

TAIR|locus:2204685 NAC032 "NAC domain containing protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 1.9e-15, P = 1.9e-15
 Identities = 62/185 (33%), Positives = 93/185 (50%)

Query:     9 PVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLE-D 67
             P G +F P++E+LV  YL  K +  P P     + ++DLY Y+ PWD+      P++   
Sbjct:    11 PPGFRFHPTDEELVLMYLCRKCASQPIPAP--IITELDLYRYD-PWDL------PDMALY 61

Query:    68 GE-DLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDN 126
             GE + YFF+   +K  NGSR NR  G+G W+   A + +      +P+G KK   + +  
Sbjct:    62 GEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPI---GRPKPVGIKKALVFYSGK 118

Query:   127 FPHNRC--WIMHEYTL---NASLLPQNHHSSSDCVLCRLRKNGGQSVGIKDSRKKIKND- 180
              P+     WIMHEY L   + S+  +N     D VLCR+    G    I+  R  I++  
Sbjct:   119 PPNGEKTNWIMHEYRLADVDRSVRKKNSLRLDDWVLCRIYNKKGV---IEKRRSDIEDGL 175

Query:   181 KQVQD 185
             K V D
Sbjct:   176 KPVTD 180

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2051053 NAC041 "NAC domain containing protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 1.9e-15, P = 1.9e-15
 Identities = 53/195 (27%), Positives = 100/195 (51%)

Query:     8 LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLED 67
             LP G +F P++E+LV  YL  K++G+P P     + + D+    +PWD+      P   +
Sbjct:    15 LPPGFRFHPTDEELVVQYLRRKVTGLPLP--ASVIPETDVCK-SDPWDL------PGDCE 65

Query:    68 GEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNF 127
              E +YFF+  + K  NG+R NR  GSG W+     + +  +     +G KK   +     
Sbjct:    66 SE-MYFFSTREAKYPNGNRSNRSTGSGYWKATGLDKQIGKKKL--VVGMKKTLVFYKGKP 122

Query:   128 PHN-RC-WIMHEYTLNASLLPQNHHSSSDCVLCRL---RKNGGQSVGIKDSRKKIKNDKQ 182
             P+  R  W++HEY L  S     +  + + VLCR+   +++   S   +D +++++N+K+
Sbjct:   123 PNGTRTNWVLHEYRLVDSQQDSLYGQNMNWVLCRVFLKKRSNSNSKRKEDEKEEVENEKE 182

Query:   183 VQ-DNDHQPAGKSNS 196
              + + + +   K ++
Sbjct:   183 TETEREREEENKKST 197

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2075835 NAC052 "NAC domain containing protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 87/302 (28%), Positives = 137/302 (45%)

Query:     8 LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLED 67
             L  G +F P++E+LV YYL  K+ G P  F    + +VD+Y +E PWD+   F      D
Sbjct:    27 LAPGFRFHPTDEELVSYYLKRKVLGQPVRFDA--IGEVDIYKHE-PWDL-AVFSRLKTRD 82

Query:    68 GEDLYFFTNLKKKSINGSRINRKVGSGAWQ--GEDAGELVLSRNSNRPIGSKKIFRYEND 125
              ++ YF++ L KK  NG+R+NR    G W+  G+D  E+   R     +G KK   + + 
Sbjct:    83 -QEWYFYSALDKKYGNGARMNRATNRGYWKATGKDR-EI---RRDILLLGMKKTLVFHSG 137

Query:   126 NFPHN-RC-WIMHEYTLNASLLPQNHHSSSDC-VLCRL--RKNGGQSVGIKDSRKKIKND 180
               P   R  W+MHEY L      +N +   D  VLCR+  + N G   G   +R     +
Sbjct:   138 RAPDGLRTNWVMHEYRLVEYETEKNGNLVQDAYVLCRVFHKNNIGPPSG---NRYAPFME 194

Query:   181 KQVQDNDHQPAGKSNSRKRVKFEHQVNDNDQPDEPFVENHQNQYVQENQSQPLNERSPHK 240
             ++  D++       + + R++     N NDQ D+  +++     +  N ++P  E +P  
Sbjct:   195 EEWADDEGALIPGIDVKLRLEPPPVANGNDQMDQE-IQSASKSLI--NINEPPRETAPLD 251

Query:   241 LLESSVKNNPEE--KPPVPRTKQTLLEQIEHLAENGYPSTFEENQQQPMTEPNLHNQLEL 298
             + ES  +N+ E   KP          E  E L         EE   +P+   N    L L
Sbjct:   252 I-ESDQQNHHENDLKPEEHNNNNNYDENEETLKREQMEE--EERPPRPVCVLNKEAPLPL 308

Query:   299 SQ 300
              Q
Sbjct:   309 LQ 310

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NAC135 NAC domain protein, IPR003441 (417 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	406
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	5e-29

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  109 bits (275), Expect = 5e-29
 Identities = 52/143 (36%), Positives = 74/143 (51%), Gaps = 24/143 (16%)

Query: 8   LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLED 67
           LP G +F P++E+LV YYL  K+ G P P ++  + +VD+Y + EPWD+     G     
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLD-VIPEVDIYKF-EPWDL---PDGKAKGG 55

Query: 68  GEDLYFFTNLKKKSINGSRINRKVGSGAW--QGEDAGELVLSRNSNRPIGSKKIFRY--- 122
             + YFF+   +K  NGSR NR  GSG W   G+D  + VLS+     +G KK   +   
Sbjct: 56  DREWYFFSPRDRKYPNGSRTNRATGSGYWKATGKD--KPVLSKGG-EVVGMKKTLVFYKG 112

Query: 123 -----ENDNFPHNRCWIMHEYTL 140
                E  +      W+MHEY L
Sbjct: 113 RAPKGEKTD------WVMHEYRL 129

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	406
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=2e-40  Score=288.45  Aligned_cols=127  Identities=38%  Similarity=0.727  Sum_probs=92.6

Q ss_pred             CCCCCeEcCChHHHHHHHHHHhHcCCCCCCcceeeEeccCCCCCCCcchhhhcCCCCCCCCceEEEEecccccCCCCCcc
Q 043513            8 LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLEDGEDLYFFTNLKKKSINGSRI   87 (406)
Q Consensus         8 LPpGfRF~PTDEELV~~YL~rKi~G~plp~~~~vI~evDVY~~~ePWdLp~~~~~~~~~d~eeWYFFspr~rk~~nG~R~   87 (406)
                      |||||||+|||+|||.+||++|+.|.+++. ..+|.++|||++ +||+|++.+.    .++++||||+++++++.+|+|.
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~-~~~i~~~Diy~~-~P~~L~~~~~----~~~~~~yFF~~~~~~~~~~~r~   74 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPC-EDVIHDVDIYSA-HPWELPAKFK----GGDEEWYFFSPRKKKYPNGGRP   74 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS--CHSEE--GGGS--GGGCHHHSS----S-SSEEEEEEE----------S
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCc-ccceeecccCcc-ChHHhhhhcc----CCCceEEEEEecccccCCcccc
Confidence            899999999999999999999999999887 367999999996 9999995432    2455899999999999999999


Q ss_pred             ceecccceeecccCCeEEEeCCCCcceeeEEeEeeeCCCCC--CCcCeEEEEEEeC
Q 043513           88 NRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNFP--HNRCWIMHEYTLN  141 (406)
Q Consensus        88 ~R~tggG~WKatG~~k~I~~~~~g~vIG~KKtL~Fy~g~sp--~kT~WiMhEY~L~  141 (406)
                      +|++++|+||++|+.+.|.+. +|++||+||+|+||.++.+  .+|+|+||||+|.
T Consensus        75 ~R~~~~G~Wk~~g~~~~i~~~-~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   75 NRVTGGGYWKSTGKEKPIKDP-GGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             -EEETTEEEEEECEEEEEEE--TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             cccccceEEeecccccccccc-cceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            999999999999999999985 8899999999999965444  4899999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	406
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		4e-15
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		5e-13
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		6e-13

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 8   LPVGCKFLPSEEQLVHYYLFNKISG--IPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNL 65
           LP G +F P++++LV +YL  K +G  +P P +     +VDLY ++ PWD+ ++     L
Sbjct: 15  LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIA----EVDLYKFD-PWDLPER----AL 65
Query: 66  EDGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYEND 125
               + YFFT   +K  NGSR NR  G+G W+   A + V  R   R +G KK   +   
Sbjct: 66  FGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPR--GRTLGIKKALVFYAG 123
Query: 126 NFPHN--RCWIMHEYTLNASLLPQNHHSSS-----DCVLCRL 160
             P      WIMHEY L  +               D VLCRL
Sbjct: 124 KAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRL 165

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 21/163 (12%)
Query: 8   LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPN--L 65
           LP G +F P++E+L+  YL  K +G    F    + ++DLY ++ PW +      PN  L
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGYD--FSLQLIAEIDLYKFD-PWVL------PNKAL 67
Query: 66  EDGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYEND 125
              ++ YFF+   +K  NGSR NR  GSG W+     +++ +      +G KK   +   
Sbjct: 68  FGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR--VGIKKALVFYIG 125
Query: 126 NFPHNRC--WIMHEYTLNASLLPQNHHSSS---DCVLCRLRKN 163
             P      WIMHEY L   + P   + S+   D VLCR+ K 
Sbjct: 126 KAPKGTKTNWIMHEYRL---IEPSRRNGSTKLDDWVLCRIYKK 165

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 21/163 (12%)
Query: 8   LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPN--L 65
           LP G +F P++E+L+  YL  K +G    F    + ++DLY ++ PW +      PN  L
Sbjct: 20  LPPGFRFYPTDEELMVQYLCRKAAGYD--FSLQLIAEIDLYKFD-PWVL------PNKAL 70
Query: 66  EDGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYEND 125
              ++ YFF+   +K  NGSR NR  GSG W+     +++ +      +G KK   +   
Sbjct: 71  FGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR--VGIKKALVFYIG 128
Query: 126 NFPHNRC--WIMHEYTLNASLLPQNHHSSS---DCVLCRLRKN 163
             P      WIMHEY L   + P   + S+   D VLCR+ K 
Sbjct: 129 KAPKGTKTNWIMHEYRL---IEPSRRNGSTKLDDWVLCRIYKK 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	406
1ut7_A	171	No apical meristem protein; transcription regulati	3e-29
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	1e-28
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  110 bits (278), Expect = 3e-29
 Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 16/164 (9%)

Query: 8   LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLED 67
           LP G +F P++E+L+  YL  K +G         + ++DLY ++ PW +        L  
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFD-PWVL----PNKALFG 69

Query: 68  GEDLYFFTNLKKKSINGSRINRKVGSGAWQ--GEDAGELVLSRNSNRPIGSKKIFRYEND 125
            ++ YFF+   +K  NGSR NR  GSG W+  G D  +++ +    + +G KK   +   
Sbjct: 70  EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTD--KIIST--EGQRVGIKKALVFYIG 125

Query: 126 NFPHNR--CWIMHEYTLNASLLPQNHHSSSDCVLCRL-RKNGGQ 166
             P      WIMHEY L             D VLCR+ +K    
Sbjct: 126 KAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 169

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  109 bits (274), Expect = 1e-28
 Identities = 56/167 (33%), Positives = 77/167 (46%), Gaps = 19/167 (11%)

Query: 8   LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLED 67
           LP G +F P++++LV +YL  K +G   P     + +VDLY + +PWD+        L  
Sbjct: 15  LPPGFRFHPTDDELVEHYLCRKAAGQRLPVP--IIAEVDLYKF-DPWDL----PERALFG 67

Query: 68  GEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKK--IFRYEND 125
             + YFFT   +K  NGSR NR  G+G W+   A + V      R +G KK  +F Y   
Sbjct: 68  AREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAP--RGRTLGIKKALVF-YAGK 124

Query: 126 NFPHNR-CWIMHEYTLNASLLPQNHHSSS-----DCVLCRL-RKNGG 165
                +  WIMHEY L  +               D VLCRL  K   
Sbjct: 125 APRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNE 171

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 75/531 (14%), Positives = 146/531 (27%), Gaps = 177/531 (33%)

Query: 16  PSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWK-QFGGPNLE-------- 66
                     LF  +       V+ FV++V   +Y+      K +   P++         
Sbjct: 58  KDAVSGT-LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 67  -----DGEDL--YFFTNLK-----KKSINGSRINRKV------GSG-AWQGEDAGELVLS 107
                D +    Y  + L+     ++++   R  + V      GSG  W       + L 
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-------VALD 169

Query: 108 RNSNRPIGSK---KIF--RYENDNFPHNRCWIMHE--YTLNASLLPQNHHSSS-----DC 155
              +  +  K   KIF    +N N P     ++ +  Y ++ +   ++ HSS+       
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 156 VLCRLR-----KNGGQSVGIKD---SRKKIK------------NDKQVQDNDHQPAGKSN 195
           +   LR     K     + +     + K                 KQV D        + 
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD-----FLSAA 284

Query: 196 SRKRVKFEHQ------------------VNDNDQPDE-----PFV----------ENHQN 222
           +   +  +H                       D P E     P                 
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 223 QYVQENQSQPLNERSPHKLLESSVKN-NPEEK----------PP-VPRTKQTL------- 263
              +      L       ++ESS+    P E           PP        L       
Sbjct: 345 DNWKHVNCDKLT-----TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 264 ----LEQIEH-------LAENGYPSTFE------ENQQQPMTEPNLHNQL--------EL 298
               +  + +       + +    ST        E + +   E  LH  +          
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 299 SQNHPLMEQTPSYLLKGQEENHQLAVTEQNPHHLELSDNHQNMNHTSSSNLE----ENQL 354
             +  +      Y       +H +       HHL+  ++ + M       L+    E ++
Sbjct: 460 DSDDLIPPYLDQYFY-----SH-IG------HHLKNIEHPERMTLFRMVFLDFRFLEQKI 507

Query: 355 --PATEQSHDDAIYSELTDINSWVVHQLTRIDDATYPHLADD--KFLVSNE 401
              +T  +   +I + L  +  +  + +   +D  Y  L +    FL   E
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPY-ICD-NDPKYERLVNAILDFLPKIE 556

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 59/416 (14%), Positives = 121/416 (29%), Gaps = 100/416 (24%)

Query: 19  EQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEE-PWDIWKQ------FGGPNLEDGEDL 71
           E   H Y +  I  +   F + FV + D  D ++ P  I  +          +   G   
Sbjct: 10  ETGEHQYQYKDI--LSV-FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 72  YFFTNLKKKSINGSRINRKVGSGAWQGEDAGELV--LSRNSNRPIGSKKIFRYENDNFPH 129
            F+T L K+      + + V        +   L+  +     +P    +++  + D   +
Sbjct: 67  LFWTLLSKQE---EMVQKFVEEV--LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-Y 120

Query: 130 NRCWIMHEYTLNASLLPQNHHSSSDCVLCRLRKNGGQSV-GIKDSRKKIKNDKQVQDNDH 188
           N   +  +Y ++     Q +       L  LR      + G+  S               
Sbjct: 121 NDNQVFAKYNVSR---LQPYLKLRQA-LLELRPAKNVLIDGVLGS--------------- 161

Query: 189 QPAGKS--------NSRKRVKFEHQV------NDNDQPDEPFVENHQNQYVQ--ENQSQP 232
              GK+        + + + K + ++      N N    E  +E  Q    Q   N +  
Sbjct: 162 ---GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS--PETVLEMLQKLLYQIDPNWTSR 216

Query: 233 LNERSPHKLLESSVKNNPEEKPPVPRTKQTLL--------EQIEH--------------- 269
            +  S  KL   S++            +  LL        +                   
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 270 ----LAENGYPSTFEENQQQPMTEPNLHNQLELSQNHPLMEQTPSYLLKGQEENHQLAVT 325
               L+         ++    +T   + + L    +    +  P  +L      +   ++
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-QDLPREVLTT----NPRRLS 331

Query: 326 ---EQNPHHLELSDNHQNMNHTSSSNLEE---NQLPATEQSH---DDAIYSELTDI 372
              E     L   DN +++N    + + E   N L   E        +++     I
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	406
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=6.9e-51  Score=372.72  Aligned_cols=154  Identities=35%  Similarity=0.621  Sum_probs=128.7

Q ss_pred             cccCCCCCCCeEcCChHHHHHHHHHHhHcCCCCCCcceeeEeccCCCCCCCcchhhhcCCCCCCCCceEEEEecccccCC
Q 043513            3 ERSRILPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLEDGEDLYFFTNLKKKSI   82 (406)
Q Consensus         3 ~~~~~LPpGfRF~PTDEELV~~YL~rKi~G~plp~~~~vI~evDVY~~~ePWdLp~~~~~~~~~d~eeWYFFspr~rk~~   82 (406)
                      +....|||||||+|||||||.|||++|+.|.+++.  .+|.++|||.+ +||+||+.+.    .++.+|||||++++||+
T Consensus        10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~--~~I~evDvy~~-~Pw~Lp~~~~----~g~~ewYFFs~r~~ky~   82 (174)
T 3ulx_A           10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPV--PIIAEVDLYKF-DPWDLPERAL----FGAREWYFFTPRDRKYP   82 (174)
T ss_dssp             CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSS--SCCEECCGGGS-CGGGSGGGCS----SCSSEEEEEEECCC---
T ss_pred             ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCc--CeeeecccccC-Cchhhhhhhc----cCCceEEEEeccccccC
Confidence            45678999999999999999999999999999987  58999999995 9999998742    24567999999999999


Q ss_pred             CCCccceecccceeecccCCeEEEeCCCCcceeeEEeEeeeCCCCCC--CcCeEEEEEEeCCCCCCC-----CCCCCCCe
Q 043513           83 NGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNFPH--NRCWIMHEYTLNASLLPQ-----NHHSSSDC  155 (406)
Q Consensus        83 nG~R~~R~tggG~WKatG~~k~I~~~~~g~vIG~KKtL~Fy~g~sp~--kT~WiMhEY~L~~~~~~~-----~~~~~~d~  155 (406)
                      +|.|++|+|++||||++|+++.|..  .|.+||+||+|+||.|+++.  +|+|+||||+|.......     .....++|
T Consensus        83 ~g~R~nR~t~~G~WkatG~dk~I~~--~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~w  160 (174)
T 3ulx_A           83 NGSRPNRAAGNGYWKATGADKPVAP--RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDW  160 (174)
T ss_dssp             --CCSCEEETTEEEEECSCCEEECC--SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSE
T ss_pred             CCCCceeecCCceEccCCCCcEEee--CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCE
Confidence            9999999999999999999999986  37999999999999998764  899999999999864321     12356899


Q ss_pred             EEEEEEEcCC
Q 043513          156 VLCRLRKNGG  165 (406)
Q Consensus       156 VLCRIykK~~  165 (406)
                      ||||||+|+.
T Consensus       161 VlCrvf~K~~  170 (174)
T 3ulx_A          161 VLCRLYNKKN  170 (174)
T ss_dssp             EEEEEEESCC
T ss_pred             EEEEEEEcCC
Confidence            9999999875

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=1.3e-50  Score=370.05  Aligned_cols=152  Identities=31%  Similarity=0.598  Sum_probs=124.2

Q ss_pred             cCCCCCCCeEcCChHHHHHHHHHHhHcCCCCCCcceeeEeccCCCCCCCcchhhhcCCCCCCCCceEEEEecccccCCCC
Q 043513            5 SRILPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLEDGEDLYFFTNLKKKSING   84 (406)
Q Consensus         5 ~~~LPpGfRF~PTDEELV~~YL~rKi~G~plp~~~~vI~evDVY~~~ePWdLp~~~~~~~~~d~eeWYFFspr~rk~~nG   84 (406)
                      ...|||||||+|||||||.|||++|+.|.+++.  .+|.++|||.+ +||+||+...    .++.+||||+++++++++|
T Consensus        14 ~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~--~~I~e~Diy~~-~Pw~Lp~~~~----~g~~ewyFFs~r~~k~~~g   86 (171)
T 1ut7_A           14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSL--QLIAEIDLYKF-DPWVLPNKAL----FGEKEWYFFSPRDRKYPNG   86 (171)
T ss_dssp             SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSS--CCSEECCGGGS-CGGGHHHHSS----SCSSEEEEEEECCC-----
T ss_pred             ccCCCCcceeCCChHHHHHHHHHHHhcCCCCCC--CeEeecccccC-ChhHhhchhh----cCCccEEEEeccccccCCC
Confidence            468999999999999999999999999999986  58999999995 9999999842    3456799999999999999


Q ss_pred             CccceecccceeecccCCeEEEeCCCCcceeeEEeEeeeCCCCCC--CcCeEEEEEEeCCCCCCCCCCCCCCeEEEEEEE
Q 043513           85 SRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNFPH--NRCWIMHEYTLNASLLPQNHHSSSDCVLCRLRK  162 (406)
Q Consensus        85 ~R~~R~tggG~WKatG~~k~I~~~~~g~vIG~KKtL~Fy~g~sp~--kT~WiMhEY~L~~~~~~~~~~~~~d~VLCRIyk  162 (406)
                      .|++|+|++||||++|+++.|..  ++.+||+||+|+||.|+++.  +|+|+||||+|............++|||||||+
T Consensus        87 ~R~~R~t~~G~Wk~tG~~k~I~~--~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~  164 (171)
T 1ut7_A           87 SRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYK  164 (171)
T ss_dssp             --CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEE
T ss_pred             CcccccCCCCEEeccCCCceEEe--cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEE
Confidence            99999999999999999999997  46899999999999998764  899999999999864322234678999999999


Q ss_pred             cCC
Q 043513          163 NGG  165 (406)
Q Consensus       163 K~~  165 (406)
                      |+.
T Consensus       165 k~~  167 (171)
T 1ut7_A          165 KQS  167 (171)
T ss_dssp             CC-
T ss_pred             cCC
Confidence            986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	406
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	1e-31

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  115 bits (290), Expect = 1e-31
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)

Query: 1   MQERSRI----LPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDI 56
           +QE   +    LP G +F P++E+L+  YL  K +G         + ++DLY + +PW +
Sbjct: 6   IQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKF-DPWVL 62

Query: 57  WKQFGGPNLEDGEDLYFFTNLKKKSINGSRINRKVGSGAWQGEDAGELVLSRNSNRPIGS 116
                   L   ++ YFF+   +K  NGSR NR  GSG W+     +++ +    + +G 
Sbjct: 63  P----NKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE--GQRVGI 116

Query: 117 KKIFRYENDNFP--HNRCWIMHEYTLNASLLPQNHHSSSDCVLCRLRK 162
           KK   +     P      WIMHEY L             D VLCR+ K
Sbjct: 117 KKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYK 164

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	406
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=7.4e-49  Score=353.57  Aligned_cols=152  Identities=31%  Similarity=0.596  Sum_probs=123.3

Q ss_pred             ccCCCCCCCeEcCChHHHHHHHHHHhHcCCCCCCcceeeEeccCCCCCCCcchhhhcCCCCCCCCceEEEEecccccCCC
Q 043513            4 RSRILPVGCKFLPSEEQLVHYYLFNKISGIPTPFVEYFVKDVDLYDYEEPWDIWKQFGGPNLEDGEDLYFFTNLKKKSIN   83 (406)
Q Consensus         4 ~~~~LPpGfRF~PTDEELV~~YL~rKi~G~plp~~~~vI~evDVY~~~ePWdLp~~~~~~~~~d~eeWYFFspr~rk~~n   83 (406)
                      ..+.|||||||+|||||||.|||++|+.|.+++.  .+|+++|||++ +||+||+.+.    .++++||||+++.+++++
T Consensus        13 ~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~--~~I~~~Dvy~~-~Pw~Lp~~~~----~~~~~wyFft~~~~k~~~   85 (166)
T d1ut7a_          13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSL--QLIAEIDLYKF-DPWVLPNKAL----FGEKEWYFFSPRDRKYPN   85 (166)
T ss_dssp             CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSS--CCSEECCGGGS-CGGGHHHHSS----SCSSEEEEEEECCC----
T ss_pred             ccccCCCccccCCCcHHHHHHHHHHHHcCCCCCc--ccceeccCCcC-Chhhccchhc----cCcceEEEEeeeccccCC
Confidence            4568999999999999999999999999999987  58999999985 9999998743    345679999999999999


Q ss_pred             CCccceecccceeecccCCeEEEeCCCCcceeeEEeEeeeCCCCCC--CcCeEEEEEEeCCCCCCCCCCCCCCeEEEEEE
Q 043513           84 GSRINRKVGSGAWQGEDAGELVLSRNSNRPIGSKKIFRYENDNFPH--NRCWIMHEYTLNASLLPQNHHSSSDCVLCRLR  161 (406)
Q Consensus        84 G~R~~R~tggG~WKatG~~k~I~~~~~g~vIG~KKtL~Fy~g~sp~--kT~WiMhEY~L~~~~~~~~~~~~~d~VLCRIy  161 (406)
                      |.|.+|++++|+||++|+++.|.+  +|.+||+||+|+||.++++.  +|+|+||||+|.+..........++|||||||
T Consensus        86 g~r~~R~~g~G~Wk~~g~~~~i~~--~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI~  163 (166)
T d1ut7a_          86 GSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY  163 (166)
T ss_dssp             ---CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEE
T ss_pred             CCccccccCCCEecccCCCceEec--CCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccccCCEEEEEEE
Confidence            999999999999999999988876  57899999999999887664  89999999999987655455677899999999


Q ss_pred             EcC
Q 043513          162 KNG  164 (406)
Q Consensus       162 kK~  164 (406)
                      +|.
T Consensus       164 ~Kk  166 (166)
T d1ut7a_         164 KKQ  166 (166)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            884