Citrus Sinensis ID: 043515

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MIVYTQNFKFDKLDFSPMGKDSKPKDGGKGKGKQAAGGADDSKGKGKGGKSADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccEEEEEEEEEcccccHHHHHHHHHccccccccccccccHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccccccccccccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccccccccccccccHcccccccEEcccccHHHHHHHHHHHHHHcccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHcccccccccEcccccEEEEEEEcccc
Coil and Loop (DISEMBL)
mivytqnfkfdkldfspmgkdskpkdggkgkgkqaaggaddskgkgkggksadglgtCTYVKARHILCEKQGKINEAYKKLQdgwlsngdkvpqaEFSKIAAeysecpsgkkggdlgwfprgkmagpfqevsfntpvgvtsapfksthgyHIILCEGRKN
Flexible Loop (DISEMBL)
mivytqnfkfdkldfspmgkdskpkdggkgkgkqaaggaddskgkgkggksadglGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTsapfksthgyhiilcegrkn
Low Complexity Region (SEG)
MIVYTQNFKFDKLDFSPMgkdskpkdggkgkgkqaaggaddskgkgkggksadgLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN
Disordered region (IsUnstruct)
*****************************************************GLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKV****FSKIAAEY*********GDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCE****
Disordered Region (DISOPRED)
***********************************************************YVKARHILCEKQG******************KVPQAEFSKI****************GWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGR**
Disordered Region (DISEMBL)
MIVYTQNFKFDKLDFSPMG********************************ADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN
Disordered Region (DISPRO)
MIVYTQNFKFDKLDFSPMGKDS**********KQAAGGADDSKGKGKGGKSADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPS*KKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEG***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIVYTQNFKFDKLDFSPMGKDSKPKDGGKGKGKQAAGGADDSKGKGKGGKSADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
A6QPY8	131	Peptidyl-prolyl cis-trans	yes	no	0.55	0.671	0.495	1e-20
Q9Y237	131	Peptidyl-prolyl cis-trans	no	no	0.55	0.671	0.495	3e-20
Q9CWW6	131	Peptidyl-prolyl cis-trans	yes	no	0.55	0.671	0.495	3e-20
Q6P4K8	127	Peptidyl-prolyl cis-trans	yes	no	0.55	0.692	0.476	7e-20
B5KFL3	128	Peptidyl-prolyl cis-trans	yes	no	0.55	0.687	0.485	1e-19
Q503Y7	128	Peptidyl-prolyl cis-trans	yes	no	0.562	0.703	0.457	4e-19
Q5B5W1	128	Peptidyl-prolyl cis-trans	yes	no	0.762	0.953	0.425	1e-17
Q9KDN4	333	Foldase protein PrsA OS=B	yes	no	0.587	0.282	0.371	3e-14
Q7RYY4	130	Peptidyl-prolyl cis-trans	N/A	no	0.668	0.823	0.390	4e-14
Q4I665	133	Peptidyl-prolyl cis-trans	yes	no	0.612	0.736	0.393	4e-14

>sp|A6QPY8|PIN4_BOVIN Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Bos taurus GN=PIN4 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 65/105 (61%), Gaps = 17/105 (16%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
           VK RHILCEK GKI EA +KL+ G           +F+++AA+YSE    ++GGDLGW  
Sbjct: 38  VKVRHILCEKHGKILEAMEKLKSGM----------KFNEVAAQYSE-DKARQGGDLGWMT 86

Query: 121 RGKMAGPFQEVSFNTPVGV------TSAPFKSTHGYHIILCEGRK 159
           RG M GPFQE +F  P+ V      T  P K+  GYHII+ EGRK
Sbjct: 87  RGSMVGPFQEAAFALPISVLDKPVFTDPPVKTKFGYHIIMVEGRK 131

Involved as a ribosomal RNA processing factor in ribosome biogenesis. Binds to tightly bent AT-rich stretches of double-stranded DNA.
Bos taurus (taxid: 9913)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q9Y237|PIN4_HUMAN Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Homo sapiens GN=PIN4 PE=1 SV=1

 Score = 97.8 bits (242), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 63/105 (60%), Gaps = 17/105 (16%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
           VK RHILCEK GKI EA +KL+ G            F+++AA+YSE    ++GGDLGW  
Sbjct: 38  VKVRHILCEKHGKIMEAMEKLKSGM----------RFNEVAAQYSE-DKARQGGDLGWMT 86

Query: 121 RGKMAGPFQEVSFNTPVG------VTSAPFKSTHGYHIILCEGRK 159
           RG M GPFQE +F  PV        T  P K+  GYHII+ EGRK
Sbjct: 87  RGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131

Isoform 2 binds to double-stranded DNA.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9CWW6|PIN4_MOUSE Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Mus musculus GN=Pin4 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 62/105 (59%), Gaps = 17/105 (16%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
           VK RHILCEK GKI EA +KL+ G            FS++A +YSE    ++GGDLGW  
Sbjct: 38  VKVRHILCEKHGKIMEAMEKLKSGM----------RFSEVATQYSE-DKARQGGDLGWMT 86

Query: 121 RGKMAGPFQEVSFNTPVG------VTSAPFKSTHGYHIILCEGRK 159
           RG M GPFQE +F  PV        T  P K+  GYHII+ EGRK
Sbjct: 87  RGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131

Involved as a ribosomal RNA processing factor in ribosome biogenesis. Binds to tightly bent AT-rich stretches of double-stranded DNA.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q6P4K8|PIN4_XENTR Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Xenopus tropicalis GN=pin4 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 62/105 (59%), Gaps = 17/105 (16%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
           VK RHILCEK GK+ EA +KL+ G            FS++A +YSE    ++GGDLGW  
Sbjct: 34  VKVRHILCEKHGKVMEAMEKLKSG----------VRFSEVATQYSE-DKARQGGDLGWMT 82

Query: 121 RGKMAGPFQEVSFNTPVGV------TSAPFKSTHGYHIILCEGRK 159
           RG M GPFQ+ +F  PV        T  P K+  GYHII+ EGRK
Sbjct: 83  RGSMVGPFQDAAFALPVSTMDKPVYTDPPVKTKFGYHIIMVEGRK 127

May be involved as a ribosomal RNA processing factor in ribosome biogenesis. Binds to DNA.

Xenopus tropicalis (taxid: 8364)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|B5KFL3|PIN4_TAEGU Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Taeniopygia guttata GN=PIN4 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 62/105 (59%), Gaps = 17/105 (16%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
           VK RHILCEK G+  EA +KL+ G            FS++AA+YSE    ++GGDLGW  
Sbjct: 35  VKVRHILCEKHGRAMEAMEKLKSG----------QRFSEVAAQYSE-DKARQGGDLGWMT 83

Query: 121 RGKMAGPFQEVSFNTPVG------VTSAPFKSTHGYHIILCEGRK 159
           RG M GPFQE +F  PV        T  P K+  GYHII+ EGRK
Sbjct: 84  RGSMVGPFQEAAFALPVSSMDKPVYTDPPVKTKFGYHIIMVEGRK 128

May be involved as a ribosomal RNA processing factor in ribosome biogenesis. Binds to DNA.

Taeniopygia guttata (taxid: 59729)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q503Y7|PIN4_DANRE Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Danio rerio GN=pin4 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 17/107 (15%)

Query: 59  TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGW 118
           T VK RHILCEK GK  EA +K++ G            FS++AA+YSE    ++GGDLGW
Sbjct: 33  TAVKVRHILCEKHGKCMEAMEKIKSGM----------RFSEVAAQYSE-DKARQGGDLGW 81

Query: 119 FPRGKMAGPFQEVSFNTPVGV------TSAPFKSTHGYHIILCEGRK 159
             RG M GPFQ+ +F  P+        T  P K+  GYHII+ EG+K
Sbjct: 82  MTRGSMVGPFQDAAFALPISTMDKPVYTDPPVKTKFGYHIIMVEGKK 128

May be involved as a ribosomal RNA processing factor in ribosome biogenesis. Binds to DNA.

Danio rerio (taxid: 7955)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5B5W1|PIN4_EMENI Peptidyl-prolyl cis-trans isomerase pin4 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=pin4 PE=3 SV=1

 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 84/148 (56%), Gaps = 26/148 (17%)

Query: 18  MGK-DSKPKDGGKGKGKQAAGGA-DDSKGKGKGGKSADGLGTCTYVKARHILCEKQGKIN 75
           MGK ++K   GG  K K  AG A DDSKGK KG +S         V  RHILCEK  K  
Sbjct: 1   MGKGNAKNSGGGDKKSKAKAGDAKDDSKGKMKGAQS---------VNVRHILCEKFSKKE 51

Query: 76  EAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNT 135
           EA +K+++G          A+F ++A EYSE    ++GG LGW  +G++  PF+EV+F+ 
Sbjct: 52  EALEKIRNG----------AKFDEVAREYSE-DKARQGGSLGWKSKGELELPFEEVAFSL 100

Query: 136 PVGVTSAP----FKSTHGYHIILCEGRK 159
               T  P     K+ +GYHII+ EGRK
Sbjct: 101 EQSTTGNPKIGEAKTGYGYHIIMVEGRK 128

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9KDN4|PRSA_BACHD Foldase protein PrsA OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=prsA PE=3 SV=1

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 11/105 (10%)

Query: 57  TCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGK-KGGD 115
           +   V+A HIL E +    E   +L+ G           +F+++A+EYS  PS +   GD
Sbjct: 154 SLIEVEASHILVEDEETAEEVLDRLEAG----------DDFAELASEYSVDPSAEANNGD 203

Query: 116 LGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN 160
           LG+F +G M   F+E +FN  +   S P +ST+GYHIIL   RK+
Sbjct: 204 LGFFGKGDMVPEFEEAAFNMEIDEVSEPVESTYGYHIILVTDRKD 248

Plays a major role in protein secretion by helping the post-translocational extracellular folding of several secreted proteins.

Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q7RYY4|PIN4_NEUCR Peptidyl-prolyl cis-trans isomerase pin-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pin-4 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 65/128 (50%), Gaps = 21/128 (16%)

Query: 36  AGGADDSKGKGKGGKSADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQA 95
           AG  D  K  GK  K A        +  RHILCEK GK  EA  K++DG          A
Sbjct: 20  AGNKDAGKDAGKASKGAQS------INVRHILCEKHGKKEEALAKIRDG----------A 63

Query: 96  EFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAP----FKSTHGYH 151
           +F  +A EYSE    + GG LGW  +G +   F++V+F      TS+P     K+  GYH
Sbjct: 64  DFGAVAREYSE-DKARTGGSLGWKQKGTLDPEFEKVAFALETSSTSSPKIGEVKTQFGYH 122

Query: 152 IILCEGRK 159
           II+ EG+K
Sbjct: 123 IIMVEGKK 130

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q4I665|PIN4_GIBZE Peptidyl-prolyl cis-trans isomerase PIN4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PIN4 PE=3 SV=2

 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 63/122 (51%), Gaps = 24/122 (19%)

Query: 42  SKGKGKGGKSADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIA 101
           S GK KG +S         +  RHILCEK  K  EA  KL DG           +F ++A
Sbjct: 32  SGGKAKGAQS---------INVRHILCEKHAKKEEALAKLNDG----------VKFDEVA 72

Query: 102 AEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAP----FKSTHGYHIILCEG 157
            EYSE    ++GG LGW  +G +   F+EV+F      T++P     K+  GYHII+ EG
Sbjct: 73  REYSE-DKARQGGSLGWKTKGSLDPKFEEVAFALETSTTNSPKFVEVKTGFGYHIIMVEG 131

Query: 158 RK 159
           RK
Sbjct: 132 RK 133

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
116786570	142	unknown [Picea sitchensis]	0.887	1.0	0.874	5e-65
217075350	144	unknown [Medicago truncatula] gi|3885159	0.887	0.986	0.875	5e-61
225457365	158	PREDICTED: peptidyl-prolyl cis-trans iso	0.893	0.905	0.833	6e-61
297733955	175	unnamed protein product [Vitis vinifera]	0.893	0.817	0.833	1e-60
225457367	144	PREDICTED: peptidyl-prolyl cis-trans iso	0.893	0.993	0.833	1e-60
255547349	145	rotamase, putative [Ricinus communis] gi	0.887	0.979	0.856	6e-60
449452070	149	PREDICTED: peptidyl-prolyl cis-trans iso	0.893	0.959	0.832	2e-58
449515117	149	PREDICTED: LOW QUALITY PROTEIN: peptidyl	0.893	0.959	0.825	6e-58
224098920	148	predicted protein [Populus trichocarpa]	0.743	0.804	0.873	5e-57
224143511	141	predicted protein [Populus trichocarpa]	0.743	0.843	0.873	6e-57

>gi|116786570|gb|ABK24159.1| unknown [Picea sitchensis]

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 125/143 (87%), Positives = 131/143 (91%), Gaps = 1/143 (0%)

Query: 18  MGKDSKPKDGGKGKGKQAAGGADDSKGKGKGGKSADGLGTCTYVKARHILCEKQGKINEA 77
           MGKD K K+  KGKGKQA+GG  D KGKGK GK ADGLGTCTYVKARHILCEKQGKINEA
Sbjct: 1   MGKDGKAKESSKGKGKQASGGGSDEKGKGKSGK-ADGLGTCTYVKARHILCEKQGKINEA 59

Query: 78  YKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPV 137
           YKKLQDGWLSNGDKVP AEF+K+AAEYSECPSGKKGGDLG+FPRGKMAGPFQEV+FNTPV
Sbjct: 60  YKKLQDGWLSNGDKVPPAEFAKVAAEYSECPSGKKGGDLGFFPRGKMAGPFQEVAFNTPV 119

Query: 138 GVTSAPFKSTHGYHIILCEGRKN 160
           G TSAPFKSTHGYHIIL EGRKN
Sbjct: 120 GATSAPFKSTHGYHIILAEGRKN 142

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075350|gb|ACJ86035.1| unknown [Medicago truncatula] gi|388515981|gb|AFK46052.1| unknown [Medicago truncatula]

 Score =  238 bits (608), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 127/145 (87%), Positives = 135/145 (93%), Gaps = 3/145 (2%)

Query: 18  MGKDSKPKDGGKGKGKQAAGGADD--SKGKGKGGKSADGLGTCTYVKARHILCEKQGKIN 75
           MGKD+K K+  KGKGKQAA G+D+  SKGKGKGGK+ADGLGTCTYVKARHILCEKQGKIN
Sbjct: 1   MGKDAKAKES-KGKGKQAASGSDENASKGKGKGGKAADGLGTCTYVKARHILCEKQGKIN 59

Query: 76  EAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNT 135
           EAYKKLQDGWL NGDKVP AEF+K+A EYSECPSGKKGGDLGWFPRGKMAGPFQEV+FNT
Sbjct: 60  EAYKKLQDGWLDNGDKVPPAEFAKVAQEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNT 119

Query: 136 PVGVTSAPFKSTHGYHIILCEGRKN 160
           PVGVTSAPFKSTHGYHIIL EGRKN
Sbjct: 120 PVGVTSAPFKSTHGYHIILSEGRKN 144

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457365|ref|XP_002284796.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting 4-like isoform 2 [Vitis vinifera]

 Score =  238 bits (607), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 120/144 (83%), Positives = 131/144 (90%), Gaps = 1/144 (0%)

Query: 18  MGKDSKPKDGGKGKGKQAAGGADD-SKGKGKGGKSADGLGTCTYVKARHILCEKQGKINE 76
           MGKDSK K+G     + A+GG ++ SKGKGK GKSADGLGTCTYVKARHILCEKQGKINE
Sbjct: 15  MGKDSKAKEGKGKGKQAASGGDENASKGKGKAGKSADGLGTCTYVKARHILCEKQGKINE 74

Query: 77  AYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTP 136
           AYKKLQDGWLSNGDKVP AEF+K+AAEYSECPSGKKGGDLGWFPRGKMAGPFQ+V+F+T 
Sbjct: 75  AYKKLQDGWLSNGDKVPPAEFAKLAAEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFSTV 134

Query: 137 VGVTSAPFKSTHGYHIILCEGRKN 160
           +G TSAPFKSTHGYHIILCEGRKN
Sbjct: 135 IGATSAPFKSTHGYHIILCEGRKN 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733955|emb|CBI15202.3| unnamed protein product [Vitis vinifera]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 120/144 (83%), Positives = 131/144 (90%), Gaps = 1/144 (0%)

Query: 18  MGKDSKPKDGGKGKGKQAAGGADD-SKGKGKGGKSADGLGTCTYVKARHILCEKQGKINE 76
           MGKDSK K+G     + A+GG ++ SKGKGK GKSADGLGTCTYVKARHILCEKQGKINE
Sbjct: 32  MGKDSKAKEGKGKGKQAASGGDENASKGKGKAGKSADGLGTCTYVKARHILCEKQGKINE 91

Query: 77  AYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTP 136
           AYKKLQDGWLSNGDKVP AEF+K+AAEYSECPSGKKGGDLGWFPRGKMAGPFQ+V+F+T 
Sbjct: 92  AYKKLQDGWLSNGDKVPPAEFAKLAAEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFSTV 151

Query: 137 VGVTSAPFKSTHGYHIILCEGRKN 160
           +G TSAPFKSTHGYHIILCEGRKN
Sbjct: 152 IGATSAPFKSTHGYHIILCEGRKN 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457367|ref|XP_002284794.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting 4-like isoform 1 [Vitis vinifera]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 120/144 (83%), Positives = 131/144 (90%), Gaps = 1/144 (0%)

Query: 18  MGKDSKPKDGGKGKGKQAAGGADD-SKGKGKGGKSADGLGTCTYVKARHILCEKQGKINE 76
           MGKDSK K+G     + A+GG ++ SKGKGK GKSADGLGTCTYVKARHILCEKQGKINE
Sbjct: 1   MGKDSKAKEGKGKGKQAASGGDENASKGKGKAGKSADGLGTCTYVKARHILCEKQGKINE 60

Query: 77  AYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTP 136
           AYKKLQDGWLSNGDKVP AEF+K+AAEYSECPSGKKGGDLGWFPRGKMAGPFQ+V+F+T 
Sbjct: 61  AYKKLQDGWLSNGDKVPPAEFAKLAAEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFSTV 120

Query: 137 VGVTSAPFKSTHGYHIILCEGRKN 160
           +G TSAPFKSTHGYHIILCEGRKN
Sbjct: 121 IGATSAPFKSTHGYHIILCEGRKN 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547349|ref|XP_002514732.1| rotamase, putative [Ricinus communis] gi|223546336|gb|EEF47838.1| rotamase, putative [Ricinus communis]

 Score =  235 bits (599), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 125/146 (85%), Positives = 129/146 (88%), Gaps = 4/146 (2%)

Query: 18  MGKDSKPKDGGKGKGKQAAGGADD---SKGKGKGGKSADGLGTCTYVKARHILCEKQGKI 74
           MGKDSK KD G     + AGGA D   SKGKGK GKS DGLGTCTYVKARHILCEKQGKI
Sbjct: 1   MGKDSKSKDAGGKGKGKQAGGASDENASKGKGKAGKS-DGLGTCTYVKARHILCEKQGKI 59

Query: 75  NEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFN 134
           NEAYKKLQDGWLSNGDKVP AEF+K+AAEYSECPSGKKGGDLGWFPRGKMAGPFQEV+FN
Sbjct: 60  NEAYKKLQDGWLSNGDKVPPAEFAKLAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFN 119

Query: 135 TPVGVTSAPFKSTHGYHIILCEGRKN 160
           T VG TSAPFKSTHGYHIILCEGRKN
Sbjct: 120 TVVGATSAPFKSTHGYHIILCEGRKN 145

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452070|ref|XP_004143783.1| PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting 4-like [Cucumis sativus]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 124/149 (83%), Positives = 130/149 (87%), Gaps = 6/149 (4%)

Query: 18  MGKDSKPKDGGKGKGKQAA---GGADDS--KGKGKGGKSA-DGLGTCTYVKARHILCEKQ 71
           MGKDSKPKD G     +A     GAD+S  KGKGK GK+A DGLGTCTYVKARHIL EKQ
Sbjct: 1   MGKDSKPKDAGGKGKGKAKQGASGADESASKGKGKSGKAASDGLGTCTYVKARHILSEKQ 60

Query: 72  GKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEV 131
           GKINEAYKKLQDGWLSNGDKVP AEF+K+AAEYSECPSGKKGGDLGWFPRGKMAGPFQEV
Sbjct: 61  GKINEAYKKLQDGWLSNGDKVPPAEFAKLAAEYSECPSGKKGGDLGWFPRGKMAGPFQEV 120

Query: 132 SFNTPVGVTSAPFKSTHGYHIILCEGRKN 160
           +F T VGVTSAPFKSTHGYHIILCEGRKN
Sbjct: 121 AFATQVGVTSAPFKSTHGYHIILCEGRKN 149

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515117|ref|XP_004164596.1| PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase NIMA-interacting 4-like [Cucumis sativus]

 Score =  228 bits (581), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 123/149 (82%), Positives = 129/149 (86%), Gaps = 6/149 (4%)

Query: 18  MGKDSKPKDGGKGKGKQAA---GGADDS--KGKGKGGKSA-DGLGTCTYVKARHILCEKQ 71
           MGKDSKPKD G     +A     GAD+S  KG GK GK+A DGLGTCTYVKARHIL EKQ
Sbjct: 1   MGKDSKPKDAGGKGKGKAKQGASGADESASKGXGKSGKAASDGLGTCTYVKARHILSEKQ 60

Query: 72  GKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEV 131
           GKINEAYKKLQDGWLSNGDKVP AEF+K+AAEYSECPSGKKGGDLGWFPRGKMAGPFQEV
Sbjct: 61  GKINEAYKKLQDGWLSNGDKVPPAEFAKLAAEYSECPSGKKGGDLGWFPRGKMAGPFQEV 120

Query: 132 SFNTPVGVTSAPFKSTHGYHIILCEGRKN 160
           +F T VGVTSAPFKSTHGYHIILCEGRKN
Sbjct: 121 AFATQVGVTSAPFKSTHGYHIILCEGRKN 149

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098920|ref|XP_002311318.1| predicted protein [Populus trichocarpa] gi|222851138|gb|EEE88685.1| predicted protein [Populus trichocarpa]

 Score =  225 bits (574), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 104/119 (87%), Positives = 114/119 (95%)

Query: 42  SKGKGKGGKSADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIA 101
           SKGKGK GK++DGLGTCTYVKARHILCEKQGKINEAY+KLQDGWLSNGDKVP AEF+K+A
Sbjct: 30  SKGKGKSGKASDGLGTCTYVKARHILCEKQGKINEAYQKLQDGWLSNGDKVPPAEFAKLA 89

Query: 102 AEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN 160
           +EYSECPSGKKGGDLGWFPRGKMAGPFQ+V+F T +G TSAPFKSTHGYH+ILCEGRKN
Sbjct: 90  SEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFATQIGATSAPFKSTHGYHVILCEGRKN 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143511|ref|XP_002336050.1| predicted protein [Populus trichocarpa] gi|222869555|gb|EEF06686.1| predicted protein [Populus trichocarpa]

 Score =  225 bits (573), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 104/119 (87%), Positives = 114/119 (95%)

Query: 42  SKGKGKGGKSADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIA 101
           SKGKGK GK++DGLGTCTYVKARHILCEKQGKINEAY+KLQDGWLSNGDKVP AEF+K+A
Sbjct: 23  SKGKGKSGKASDGLGTCTYVKARHILCEKQGKINEAYQKLQDGWLSNGDKVPPAEFAKLA 82

Query: 102 AEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN 160
           +EYSECPSGKKGGDLGWFPRGKMAGPFQ+V+F T +G TSAPFKSTHGYH+ILCEGRKN
Sbjct: 83  SEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFATQIGATSAPFKSTHGYHVILCEGRKN 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
TAIR|locus:2197970	142	AT1G26550 "AT1G26550" [Arabido	0.662	0.746	0.943	8.9e-54
UNIPROTKB|A6QPY8	131	PIN4 "Peptidyl-prolyl cis-tran	0.55	0.671	0.495	7.2e-20
UNIPROTKB|I3LBW5	131	PIN4 "Uncharacterized protein"	0.55	0.671	0.495	7.2e-20
UNIPROTKB|Q9Y237	131	PIN4 "Peptidyl-prolyl cis-tran	0.55	0.671	0.504	1.5e-19
UNIPROTKB|J9NZU7	118	PIN4 "Uncharacterized protein"	0.55	0.745	0.466	1.1e-18
ZFIN|ZDB-GENE-050522-117	128	pin4 "protein (peptidylprolyl	0.562	0.703	0.457	1.1e-18
UNIPROTKB|F1NCD7	141	PIN4 "Uncharacterized protein"	0.55	0.624	0.476	1.7e-18
FB|FBgn0039305	130	CG11858 [Drosophila melanogast	0.55	0.676	0.485	2.2e-18
WB|WBGene00012996	126	pinn-4 [Caenorhabditis elegans	0.575	0.730	0.459	4.6e-18
UNIPROTKB|F1P6G4	151	LOC100687619 "Uncharacterized	0.55	0.582	0.457	5.8e-18

TAIR|locus:2197970 AT1G26550 "AT1G26550" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 100/106 (94%), Positives = 104/106 (98%)

Query:    55 LGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGG 114
             LGTCTYVKARH+LCEKQGKINEAYKKLQDGWLSNGDKVP AEF+KIAAEYSECPSGKKGG
Sbjct:    37 LGTCTYVKARHVLCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKIAAEYSECPSGKKGG 96

Query:   115 DLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN 160
             DLGWFPRGKMAGPFQ+V+FNTPVGVTSAPFKSTHGYHIIL EGRKN
Sbjct:    97 DLGWFPRGKMAGPFQDVAFNTPVGVTSAPFKSTHGYHIILSEGRKN 142

GO:0005575 "cellular_component" evidence=ND

GO:0016853 "isomerase activity" evidence=IEA;ISS

UNIPROTKB|A6QPY8 PIN4 "Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4" [Bos taurus (taxid:9913)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 52/105 (49%), Positives = 65/105 (61%)

Query:    61 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
             VK RHILCEK GKI EA +KL+ G           +F+++AA+YSE    ++GGDLGW  
Sbjct:    38 VKVRHILCEKHGKILEAMEKLKSGM----------KFNEVAAQYSE-DKARQGGDLGWMT 86

Query:   121 RGKMAGPFQEVSFNTPVGV------TSAPFKSTHGYHIILCEGRK 159
             RG M GPFQE +F  P+ V      T  P K+  GYHII+ EGRK
Sbjct:    87 RGSMVGPFQEAAFALPISVLDKPVFTDPPVKTKFGYHIIMVEGRK 131

GO:0005819 "spindle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0030684 "preribosome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IEA

GO:0003681 "bent DNA binding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|I3LBW5 PIN4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 52/105 (49%), Positives = 65/105 (61%)

Query:    61 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
             VK RHILCEK GKI EA +KL+ G           +F+++AA+YSE    ++GGDLGW  
Sbjct:    38 VKVRHILCEKHGKILEAMEKLKSGM----------KFNEVAAQYSE-DKARQGGDLGWMT 86

Query:   121 RGKMAGPFQEVSFNTPVGV------TSAPFKSTHGYHIILCEGRK 159
             RG M GPFQE +F  P+ V      T  P K+  GYHII+ EGRK
Sbjct:    87 RGSMVGPFQEAAFALPISVLDKPVFTDPPVKTKFGYHIIMVEGRK 131

GO:0030684 "preribosome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IEA

GO:0003681 "bent DNA binding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

UNIPROTKB|Q9Y237 PIN4 "Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4" [Homo sapiens (taxid:9606)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 53/105 (50%), Positives = 65/105 (61%)

Query:    61 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
             VK RHILCEK GKI EA +KL+ G            F+++AA+YSE    ++GGDLGW  
Sbjct:    38 VKVRHILCEKHGKIMEAMEKLKSGM----------RFNEVAAQYSE-DKARQGGDLGWMT 86

Query:   121 RGKMAGPFQEVSFNTPV-GV-----TSAPFKSTHGYHIILCEGRK 159
             RG M GPFQE +F  PV G+     T  P K+  GYHII+ EGRK
Sbjct:    87 RGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131

GO:0003677 "DNA binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA;IDA

GO:0005819 "spindle" evidence=IEA;IDA

GO:0003681 "bent DNA binding" evidence=IDA

GO:0006364 "rRNA processing" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030684 "preribosome" evidence=IDA

GO:0003690 "double-stranded DNA binding" evidence=IDA

UNIPROTKB|J9NZU7 PIN4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 49/105 (46%), Positives = 62/105 (59%)

Query:    61 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
             +K RHILCEK GKI EA +KL+ G            F+++A +YSE    ++GGDLGW  
Sbjct:    25 IKVRHILCEKHGKIMEAMEKLKSGM----------RFNEVATQYSE-DKARQGGDLGWMT 73

Query:   121 RGKMAGPFQEVSFNTPVG------VTSAPFKSTHGYHIILCEGRK 159
             RG M GPFQE +F  PV        T  P ++  GYHII+ EGRK
Sbjct:    74 RGSMVGPFQEAAFALPVSGPDEPVFTDPPIRTEFGYHIIMVEGRK 118

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

ZFIN|ZDB-GENE-050522-117 pin4 "protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)" [Danio rerio (taxid:7955)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 49/107 (45%), Positives = 63/107 (58%)

Query:    59 TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGW 118
             T VK RHILCEK GK  EA +K++ G            FS++AA+YSE    ++GGDLGW
Sbjct:    33 TAVKVRHILCEKHGKCMEAMEKIKSGM----------RFSEVAAQYSE-DKARQGGDLGW 81

Query:   119 FPRGKMAGPFQEVSFNTPVGV------TSAPFKSTHGYHIILCEGRK 159
               RG M GPFQ+ +F  P+        T  P K+  GYHII+ EG+K
Sbjct:    82 MTRGSMVGPFQDAAFALPISTMDKPVYTDPPVKTKFGYHIIMVEGKK 128

GO:0016853 "isomerase activity" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|F1NCD7 PIN4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 50/105 (47%), Positives = 62/105 (59%)

Query:    61 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
             VK RHILCEK G+  EA +KL+ G            FS++A++YSE    ++GGDLGW  
Sbjct:    48 VKVRHILCEKHGRAMEAMEKLKAG----------VRFSEVASQYSE-DKARQGGDLGWMT 96

Query:   121 RGKMAGPFQEVSFNTPVG------VTSAPFKSTHGYHIILCEGRK 159
             RG M GPFQE +F  PV        T  P K+  GYHII+ EGRK
Sbjct:    97 RGSMVGPFQEAAFALPVSSMDKPVYTDPPVKTKFGYHIIMVEGRK 141

GO:0016853 "isomerase activity" evidence=IEA

GO:0003681 "bent DNA binding" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0030684 "preribosome" evidence=IEA

FB|FBgn0039305 CG11858 [Drosophila melanogaster (taxid:7227)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 51/105 (48%), Positives = 63/105 (60%)

Query:    61 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
             VK RHILCEKQGKI EA +KL+ G      K P+     +AA YSE    ++GGDLGW  
Sbjct:    37 VKVRHILCEKQGKITEAMEKLKAG-----QKFPE-----VAAAYSE-DKARQGGDLGWQI 85

Query:   121 RGKMAGPFQEVSFNTPVGV------TSAPFKSTHGYHIILCEGRK 159
             RG M GPFQ+ +F  P+        T  P K+  GYHII+ EG+K
Sbjct:    86 RGAMVGPFQDAAFALPISTVNNPVYTDPPIKTKFGYHIIMVEGKK 130

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

WB|WBGene00012996 pinn-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 51/111 (45%), Positives = 67/111 (60%)

Query:    56 GTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGD 115
             G  T VK RHILCEKQGK  EA +KL+ G           +F+++AA+YSE    + GGD
Sbjct:    28 GGGTAVKVRHILCEKQGKALEAIEKLKSGM----------KFNEVAAQYSE-DKARSGGD 76

Query:   116 LGWFPRGKMAGPFQEVSF---NT----PVGVTSAPFKSTHGYHIILCEGRK 159
             LGW  RG M GPFQ+ +F   N+    P+  T  P K+  GYH+I+ EG+K
Sbjct:    77 LGWMTRGSMVGPFQDAAFALSNSSCDKPI-YTDPPVKTKFGYHVIMVEGKK 126

GO:0016853 "isomerase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1P6G4 LOC100687619 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 48/105 (45%), Positives = 61/105 (58%)

Query:    61 VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
             +K  HILCEK GKI EA +KL+ G            F+++A +YSE    ++GGDLGW  
Sbjct:    58 IKVGHILCEKHGKIMEAMEKLKSGM----------RFNEVATQYSE-DKARQGGDLGWMT 106

Query:   121 RGKMAGPFQEVSFNTPVG------VTSAPFKSTHGYHIILCEGRK 159
             RG M GPFQE +F  PV        T  P ++  GYHII+ EGRK
Sbjct:   107 RGSMVGPFQEAAFALPVSGPDKPVFTDPPIRTKFGYHIIMVEGRK 151

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.921
4th Layer	5.2.1.8	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.1023.10.1 annotation not avaliable (141 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	160
pfam00639	94	pfam00639, Rotamase, PPIC-type PPIASE domain	1e-24
PTZ00356	115	PTZ00356, PTZ00356, peptidyl-prolyl cis-trans isom	5e-18
COG0760	320	COG0760, SurA, Parvulin-like peptidyl-prolyl isome	3e-15
PRK15441	93	PRK15441, PRK15441, peptidyl-prolyl cis-trans isom	4e-14
pfam13616	114	pfam13616, Rotamase_3, PPIC-type PPIASE domain	2e-13
PRK03002	285	PRK03002, prsA, peptidylprolyl isomerase; Reviewed	2e-13
TIGR02933	256	TIGR02933, nifM_nitrog, nitrogen fixation protein	2e-11
PRK00059	336	PRK00059, prsA, peptidylprolyl isomerase; Provisio	8e-10
PRK02998	283	PRK02998, prsA, peptidylprolyl isomerase; Reviewed	1e-09
PRK03095	287	PRK03095, prsA, peptidylprolyl isomerase; Reviewed	1e-08
PRK10770	413	PRK10770, PRK10770, peptidyl-prolyl cis-trans isom	1e-08
PRK10770	413	PRK10770, PRK10770, peptidyl-prolyl cis-trans isom	0.001

>gnl|CDD|216038 pfam00639, Rotamase, PPIC-type PPIASE domain

 Score = 90.8 bits (226), Expect = 1e-24
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 19/103 (18%)

Query: 65  HILCEKQG---------KINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYS-ECPSGKKGG 114
           HIL +            K  E  ++LQ G         +  F+++A EYS +CPS   GG
Sbjct: 1   HILIKPPESADRAAAKAKAEEILEQLQSG---------EDTFAELAREYSDDCPSAANGG 51

Query: 115 DLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEG 157
           DLGWF RG++   F++ +F+   G  S P ++  GYHII    
Sbjct: 52  DLGWFTRGQLPPEFEDAAFSLKEGEISGPVETPFGYHIIKVTD 94

Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline. Length = 94

>gnl|CDD|185573 PTZ00356, PTZ00356, peptidyl-prolyl cis-trans isomerase (PPIase); Provisional

 Score = 74.3 bits (183), Expect = 5e-18
 Identities = 40/112 (35%), Positives = 55/112 (49%), Gaps = 23/112 (20%)

Query: 61  VKARHILCEKQGKIN---------------EAYKKLQDGWLS---NGDKVPQAEFSKIAA 102
           V+A H+L +  G  N               EA K+L   W     +G+K     F +IA 
Sbjct: 6   VRAAHLLIKHTGSRNPVSRRTGKPVTRSKEEAIKELA-KWREQIVSGEK----TFEEIAR 60

Query: 103 EYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIIL 154
           + S+C S  KGGDLG+F RG+M  PF++ +F   VG  S    +  G HIIL
Sbjct: 61  QRSDCGSAAKGGDLGFFGRGQMQKPFEDAAFALKVGEISDIVHTDSGVHIIL 112

Length = 115

>gnl|CDD|223831 COG0760, SurA, Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]

 Score = 71.3 bits (174), Expect = 3e-15
 Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 6/102 (5%)

Query: 59  TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGK-KGGDLG 117
           T V+ARHIL + + K  EA   L+ G            F+++A + SE PS K  GG LG
Sbjct: 167 TEVQARHILVKAEAKAKEALALLKKGVREAKAD-----FAELAKKQSEDPSSKNGGGLLG 221

Query: 118 WFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK 159
           W  +G++   F++ +F   VG  SAP K++ GYHII  E ++
Sbjct: 222 WNKKGQLVPEFRKAAFILKVGEVSAPVKTSFGYHIIKVEKKR 263

Length = 320

>gnl|CDD|185338 PRK15441, PRK15441, peptidyl-prolyl cis-trans isomerase C; Provisional

 Score = 63.5 bits (154), Expect = 4e-14
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 10/91 (10%)

Query: 63  ARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRG 122
           A HIL +++    +  +++++G          A+F K+A ++S CPSGK+GGDLG F +G
Sbjct: 7   ALHILVKEEKLALDLLEQIKNG----------ADFGKLAKKHSICPSGKRGGDLGEFRQG 56

Query: 123 KMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
           +M   F +V F+ PV   + P  +  GYHII
Sbjct: 57  QMVPAFDKVVFSCPVLEPTGPLHTQFGYHII 87

Length = 93

>gnl|CDD|222266 pfam13616, Rotamase_3, PPIC-type PPIASE domain

 Score = 62.7 bits (153), Expect = 2e-13
 Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 22/110 (20%)

Query: 61  VKARHIL---------CEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGK 111
           VK RHIL          E +   +  Y  L+ G          A+F+ +A +YS+ P  K
Sbjct: 16  VKVRHILVAYAGAQRKAEAKALADSIYNALKGG----------ADFAALAKKYSDDPGSK 65

Query: 112 -KGGDLGWFP-RGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK 159
            +GGDLGWF   G+M   F +  F   VG      ++  GYHII    +K
Sbjct: 66  AQGGDLGWFTASGQMVKEFIDALFTLKVGEI-GVVETPFGYHIIQVTDKK 114

Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline. Length = 114

>gnl|CDD|101162 PRK03002, prsA, peptidylprolyl isomerase; Reviewed

 Score = 65.7 bits (160), Expect = 2e-13
 Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 11/100 (11%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGK-KGGDLGWF 119
           +KA HIL   + +  E  KKL  G          A F ++A + S+    K KGGDLG+F
Sbjct: 137 IKASHILVSDENEAKEIKKKLDAG----------ASFEELAKQESQDLLSKEKGGDLGYF 186

Query: 120 PRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK 159
             G+MA  F+  ++   VG  S P KS +GYHII    +K
Sbjct: 187 NSGRMAPEFETAAYKLKVGQISNPVKSPNGYHIIKLTDKK 226

Length = 285

>gnl|CDD|131979 TIGR02933, nifM_nitrog, nitrogen fixation protein NifM

 Score = 59.9 bits (145), Expect = 2e-11
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 17/101 (16%)

Query: 64  RHILCEKQGKINEA--------YKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGD 115
           RH+L        EA         ++L+            A F++ A  +S CP+  +GG 
Sbjct: 127 RHLLLTVNEDDREAVRTRILAILRRLRGK---------PAAFAEQAMRHSHCPTAMEGGL 177

Query: 116 LGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCE 156
           LGW  RG +        F    G  S P +S  G+H++LCE
Sbjct: 178 LGWVSRGLLYPQLDAALFQLAEGELSPPIESEIGWHLLLCE 218

Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase [Central intermediary metabolism, Nitrogen fixation]. Length = 256

>gnl|CDD|234605 PRK00059, prsA, peptidylprolyl isomerase; Provisional

 Score = 55.5 bits (134), Expect = 8e-10
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 13/102 (12%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGK-KGGDLGWF 119
           +   HIL + + +  +  K+L  G           +F+K+A E S+ P  K KGGDLG  
Sbjct: 197 MHLAHILVKTEDEAKKVKKRLDKG----------EDFAKVAKEVSQDPGSKDKGGDLGDV 246

Query: 120 P--RGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK 159
           P         F + +     G  SAP K+  GYHII    +K
Sbjct: 247 PYSDSGYDKEFMDGAKALKEGEISAPVKTQFGYHIIKAIKKK 288

Length = 336

>gnl|CDD|179522 PRK02998, prsA, peptidylprolyl isomerase; Reviewed

 Score = 55.0 bits (132), Expect = 1e-09
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 11/100 (11%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGK-KGGDLGWF 119
           +K  HIL + +    E  +K+ +G           +F+ +A +YSE    K +GG++  F
Sbjct: 135 MKVSHILVKDEKTAKEVKEKVNNG----------EDFAALAKQYSEDTGSKEQGGEISGF 184

Query: 120 PRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK 159
             G+    F+E ++    G  S P K+T+GYHII    +K
Sbjct: 185 APGQTVKEFEEAAYKLDAGQVSEPVKTTYGYHIIKVTDKK 224

Length = 283

>gnl|CDD|179537 PRK03095, prsA, peptidylprolyl isomerase; Reviewed

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGK-KGGDLGWF 119
           +KA HIL + +    +  ++L  G            F ++A +YSE    K KGGDLG+F
Sbjct: 133 IKASHILVKDEATAKKVKEELGQG----------KSFEELAKQYSEDTGSKEKGGDLGFF 182

Query: 120 PRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
             GKM   F++ ++       S P KS  GYHII
Sbjct: 183 GAGKMVKEFEDAAYKLKKDEVSEPVKSQFGYHII 216

Length = 287

>gnl|CDD|236758 PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 59  TYVKARHILCEKQGKIN--EAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGD 115
           T V ARHIL +    +   +A  KL+   ++   K  +  F+  A E+S+ P S  +GGD
Sbjct: 265 TEVHARHILLKPSPIMTDEQARAKLEQ--IAADIKSGKTTFAAAAKEFSQDPGSANQGGD 322

Query: 116 LGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII-LCEGRK 159
           LGW         F++       G  SAP  S+ G+H+I L + R+
Sbjct: 323 LGWATPDIFDPAFRDALMRLNKGQISAPVHSSFGWHLIELLDTRQ 367

Length = 413

>gnl|CDD|236758 PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 19/59 (32%), Positives = 28/59 (47%)

Query: 95  AEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
           A+F K+A  YS      KGG +GW    ++ G F +       G    P +S  G+HI+
Sbjct: 192 ADFGKLAIAYSADQQALKGGQMGWGRIQELPGLFAQALSTAKKGDIVGPIRSGVGFHIL 250

Length = 413

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
KOG3258	133	consensus Parvulin-like peptidyl-prolyl cis-trans	99.95
PF13616	117	Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3	99.93
PRK15441	93	peptidyl-prolyl cis-trans isomerase C; Provisional	99.93
PTZ00356	115	peptidyl-prolyl cis-trans isomerase (PPIase); Prov	99.88
TIGR02933	256	nifM_nitrog nitrogen fixation protein NifM. Member	99.88
PF00639	95	Rotamase: PPIC-type PPIASE domain; InterPro: IPR00	99.88
PRK04405	298	prsA peptidylprolyl isomerase; Provisional	99.86
PRK02998	283	prsA peptidylprolyl isomerase; Reviewed	99.85
PRK10770	413	peptidyl-prolyl cis-trans isomerase SurA; Provisio	99.85
PRK03002	285	prsA peptidylprolyl isomerase; Reviewed	99.85
PRK03095	287	prsA peptidylprolyl isomerase; Reviewed	99.85
PRK00059	336	prsA peptidylprolyl isomerase; Provisional	99.84
PRK10788	623	periplasmic folding chaperone; Provisional	99.8
PRK10770	413	peptidyl-prolyl cis-trans isomerase SurA; Provisio	99.79
KOG3259	163	consensus Peptidyl-prolyl cis-trans isomerase [Pos	99.79
PRK01326	310	prsA foldase protein PrsA; Reviewed	99.78
TIGR02925	232	cis_trans_EpsD peptidyl-prolyl cis-trans isomerase	99.77
PRK12450	309	foldase protein PrsA; Reviewed	99.75
COG0760	320	SurA Parvulin-like peptidyl-prolyl isomerase [Post	99.56
PF13145	121	Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2	99.25
PRK10788	623	periplasmic folding chaperone; Provisional	92.04

>KOG3258 consensus Parvulin-like peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3e-27  Score=172.11  Aligned_cols=106  Identities=59%  Similarity=1.046  Sum_probs=92.8

Q ss_pred             CCCCCCCCCccCCCCCceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCC
Q 043515           43 KGKGKGGKSADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRG  122 (160)
Q Consensus        43 ~~~~~~~~n~~~f~~p~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~  122 (160)
                      .+.++.++..+-....+.|++|||||+.+..+.+++++|++|          ..|.++|.+||+|+ +.+||||||++++
T Consensus        22 ~~d~~~gk~~~~kgggtaVKvRHiLCEKqGKi~EA~eKLk~G----------~~F~evAA~YSEdk-ar~GGDLGW~~RG   90 (133)
T KOG3258|consen   22 GGDGKAGKAADGKGGGTAVKVRHILCEKQGKINEAMEKLKSG----------MKFNEVAAQYSEDK-ARQGGDLGWMTRG   90 (133)
T ss_pred             CCCCcccccccCCCCcceEEEEEeeehhhchHHHHHHHHHcc----------cchHHHHHHhccCc-cccCCcccceecc
Confidence            334444555555666788999999999999999999999999          89999999999996 8889999999999


Q ss_pred             CCcHHHHHHHhcCCCCC------ccCcEEeCCeEEEEEEeEEc
Q 043515          123 KMAGPFQEVSFNTPVGV------TSAPFKSTHGYHIILCEGRK  159 (160)
Q Consensus       123 ~l~p~f~~a~f~L~~Ge------vS~Piks~~GyhIIkV~~rr  159 (160)
                      .|.-+|++++|+|+++.      ++.||+|.+|||||+|+.|+
T Consensus        91 ~MvGPFQdaAFalpvs~~~~pv~TdpP~KtkfGYHiImvEGrK  133 (133)
T KOG3258|consen   91 SMVGPFQDAAFALPVSTVDKPVYTDPPVKTKFGYHIIMVEGRK  133 (133)
T ss_pred             ccccchhhhhhcccccccCCccccCCCcccccceEEEEecccC
Confidence            99999999999999995      44677899999999999874

>PF13616 Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3UI5_A 3UI4_A 1FJD_A 1EQ3_A 1ZK6_A

Probab=99.93  E-value=2.9e-26  Score=168.84  Aligned_cols=96  Identities=39%  Similarity=0.673  Sum_probs=84.5

Q ss_pred             CCCCCceEEEEEEEecC-----------cchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCcccccc-
Q 043515           54 GLGTCTYVKARHILCEK-----------QGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFP-  120 (160)
Q Consensus        54 ~f~~p~~v~v~hIlv~~-----------~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~-  120 (160)
                      +...|++|+++||+|+.           ...|++++.+|+.|          ++|++||++||+|+ ++.+||++||++ 
T Consensus         9 ~~~~~~~v~~~~I~i~~~~~~~~~~~~ak~~a~~i~~~l~~G----------~dF~~lA~~yS~D~~s~~~gG~lgw~~~   78 (117)
T PF13616_consen    9 KKQAPDEVKVSHILIPVPDASSRSKEEAKKKADSILKQLKSG----------ADFAELAKKYSQDPSSAENGGDLGWMSE   78 (117)
T ss_dssp             --GE--EEEEEEEEESS-----------HHHHHHHHHHHHCT----------CCHHHHHHHHTSSCGTGGGTTEEEEEET
T ss_pred             ccCCcCeEEEEEEEEeccccccchhHHHHHHHHHHHHHHHCC----------CCHHHHHHHhCCCCcccccCCccccccC
Confidence            34467899999999997           44678899999988          99999999999998 689999999999 


Q ss_pred             CCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeEEc
Q 043515          121 RGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK  159 (160)
Q Consensus       121 ~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr  159 (160)
                      .+.|+++|.+++|+|++|+||+||+|++|||||+|++|+
T Consensus        79 ~~~~~~~f~~~~~~l~~G~is~~v~s~~G~hIikv~drk  117 (117)
T PF13616_consen   79 PSQLPPEFEEAAFSLKVGEISGPVESPNGYHIIKVTDRK  117 (117)
T ss_dssp             TTSSSCHHHHHHHHS-TTECTCEEEETTEEEEEEEEEE-
T ss_pred             CccccHHHHHHHHcCCCCCCCCeEEECCEEEEEEEEeeC
Confidence            999999999999999999999999999999999999986

>PRK15441 peptidyl-prolyl cis-trans isomerase C; Provisional

Probab=99.93  E-value=2.8e-25  Score=157.74  Aligned_cols=91  Identities=38%  Similarity=0.676  Sum_probs=87.0

Q ss_pred             ceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCCCCcHHHHHHHhcCCCC
Q 043515           59 TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVG  138 (160)
Q Consensus        59 ~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~~l~p~f~~a~f~L~~G  138 (160)
                      .++.++||+|.+++.|++++++|++|          .+|++||++||+|+++..||+|||+..++|+|+|.++++.|++|
T Consensus         3 ~~~~~~~I~~~~~~~A~~i~~~l~~g----------~~F~~la~~~S~~~~~~~gG~lg~~~~~~l~~~f~~a~~~l~~G   72 (93)
T PRK15441          3 KTAAALHILVKEEKLALDLLEQIKNG----------ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL   72 (93)
T ss_pred             CceEEEEEEECCHHHHHHHHHHHHCC----------CCHHHHHHHhCCCchhhcCccceeecccccCHHHHHHHHhCCCC
Confidence            57999999999999999999999998          89999999999999777899999999999999999999999999


Q ss_pred             CccCcEEeCCeEEEEEEeEEc
Q 043515          139 VTSAPFKSTHGYHIILCEGRK  159 (160)
Q Consensus       139 evS~Piks~~GyhIIkV~~rr  159 (160)
                      ++|+||+|++|||||+|++|.
T Consensus        73 ~vs~Pi~t~~G~hIlkv~~r~   93 (93)
T PRK15441         73 EPTGPLHTQFGYHIIKVLYRN   93 (93)
T ss_pred             CcCCcEEcCCEEEEEEEEecC
Confidence            999999999999999999873

>PTZ00356 peptidyl-prolyl cis-trans isomerase (PPIase); Provisional

Probab=99.88  E-value=1.5e-22  Score=148.86  Aligned_cols=91  Identities=36%  Similarity=0.644  Sum_probs=80.1

Q ss_pred             CCceEEEEEEEecCcc----------------------hHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCC
Q 043515           57 TCTYVKARHILCEKQG----------------------KINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGG  114 (160)
Q Consensus        57 ~p~~v~v~hIlv~~~~----------------------~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GG  114 (160)
                      +|++|+++|||+...+                      .++.++++|++|         +.+|+++|++||+++++.+||
T Consensus         2 ~~~~~~~~hIli~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~g---------~~~F~~la~~~S~~~~~~~gG   72 (115)
T PTZ00356          2 EGDTVRAAHLLIKHTGSRNPVSRRTGKPVTRSKEEAIKELAKWREQIVSG---------EKTFEEIARQRSDCGSAAKGG   72 (115)
T ss_pred             CCcEEEEEEEEEecCCCcCcccccccccccccHHHHHHHHHHHHHHHHhC---------ccCHHHHHHHhCCCchhhcCc
Confidence            5789999999997533                      345566666666         249999999999988888999


Q ss_pred             ccccccCCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEe
Q 043515          115 DLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCE  156 (160)
Q Consensus       115 dlG~~~~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~  156 (160)
                      ++||+...+|+|+|.+++++|++|++|.||+|++|||||+++
T Consensus        73 ~lG~~~~~~L~~~~~~a~~~L~~Geis~Pi~t~~G~hIlk~~  114 (115)
T PTZ00356         73 DLGFFGRGQMQKPFEDAAFALKVGEISDIVHTDSGVHIILRL  114 (115)
T ss_pred             cceeEcccccCHHHHHHHHcCCCCCCCCcEEECCEEEEEEEc
Confidence            999999999999999999999999999999999999999986

>TIGR02933 nifM_nitrog nitrogen fixation protein NifM

Probab=99.88  E-value=1.3e-22  Score=167.50  Aligned_cols=102  Identities=28%  Similarity=0.529  Sum_probs=89.3

Q ss_pred             CCccCCCCCceEEEEEEEecCcch--------HHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccC
Q 043515           50 KSADGLGTCTYVKARHILCEKQGK--------INEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPR  121 (160)
Q Consensus        50 ~n~~~f~~p~~v~v~hIlv~~~~~--------A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~  121 (160)
                      .|++.|..|+.++++||+|+..+.        +++++.+|+.|         ..+|++||++||.|+++.+||+|||++.
T Consensus       113 ~~~~~~~~~e~~~~~hIli~~~~~~~~~a~~~a~~l~~~l~~g---------~~~F~~lA~~~S~~~sa~~GGdlG~~~~  183 (256)
T TIGR02933       113 RHAEQFKRPEQRLTRHLLLTVNEDDREAVRTRILAILRRLRGK---------PAAFAEQAMRHSHCPTAMEGGLLGWVSR  183 (256)
T ss_pred             HHHHhcCCCCeEEEEEEEEECCcccHHHHHHHHHHHHHHHHhC---------cccHHHHHHHhCCCCccccCCccCCcCC
Confidence            567888889999999999986321        34556666664         2689999999999998889999999999


Q ss_pred             CCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeEEcC
Q 043515          122 GKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN  160 (160)
Q Consensus       122 ~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr~  160 (160)
                      +.|+|+|.+++++|++|+||+||+|++|||||+|.++++
T Consensus       184 ~~l~~~~~~~l~~L~~G~vS~Pi~s~~G~hIlkl~~~~~  222 (256)
T TIGR02933       184 GLLYPQLDAALFQLAEGELSPPIESEIGWHLLLCEAIRP  222 (256)
T ss_pred             CccChHHHHHHHcCCCCCcCCceeeCCeEEEEEEeeecC
Confidence            999999999999999999999999999999999999864

Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.

>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5

Probab=99.88  E-value=2.3e-22  Score=142.67  Aligned_cols=84  Identities=42%  Similarity=0.802  Sum_probs=75.2

Q ss_pred             EEEecCc----------chHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCC-CCCCCCCccccccCCCCcHHHHHHHh
Q 043515           65 HILCEKQ----------GKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSEC-PSGKKGGDLGWFPRGKMAGPFQEVSF  133 (160)
Q Consensus        65 hIlv~~~----------~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d-~sa~~GGdlG~~~~~~l~p~f~~a~f  133 (160)
                      ||||+.+          ..|++++.+|..|         +.+|+++|++||++ +++.+||++||+..++|+++|.++|+
T Consensus         1 HIl~~~~~~~~~~~~~~~~a~~i~~~l~~g---------~~~F~~~A~~yS~~~~~~~~gG~~g~~~~~~l~~~~~~~~~   71 (95)
T PF00639_consen    1 HILVKPPPSDEEKDAAKKKAEEIYEQLKKG---------EDSFAELAREYSEDSPSAENGGDLGWISRGQLPPEFEKALF   71 (95)
T ss_dssp             EEEEESTTSCCHHHHHHHHHHHHHHHHHTT---------SSSHHHHHHHHCSSSCTGGGTTEEEEEETTSSBHHHHHHHH
T ss_pred             CEEEECCCchhhHHHHHHHHHHHHHHHHhC---------chhHHHHHHHhCCCcccccccCccccccCCcccHHHHHHHH
Confidence            8999863          2467888888888         24599999999965 48899999999999999999999999


Q ss_pred             cCCCCCccCcEEeCCeEEEEEEeE
Q 043515          134 NTPVGVTSAPFKSTHGYHIILCEG  157 (160)
Q Consensus       134 ~L~~GevS~Piks~~GyhIIkV~~  157 (160)
                      +|++|+||.||+|++|||||+|++
T Consensus        72 ~l~~Gevs~pi~t~~G~~Ii~v~d   95 (95)
T PF00639_consen   72 ALKPGEVSKPIETDNGYHIIKVED   95 (95)
T ss_dssp             TSTTTSBEEEEEETTEEEEEEEEE
T ss_pred             hCCCCCcCCCEEECCEEEEEEEEC
Confidence            999999999999999999999986

2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....

>PRK04405 prsA peptidylprolyl isomerase; Provisional

Probab=99.86  E-value=1.4e-21  Score=164.90  Aligned_cols=92  Identities=32%  Similarity=0.515  Sum_probs=84.6

Q ss_pred             CceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCcccccc--CCCCcHHHHHHHhc
Q 043515           58 CTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFP--RGKMAGPFQEVSFN  134 (160)
Q Consensus        58 p~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~--~~~l~p~f~~a~f~  134 (160)
                      +++++++||+|++++.|++++++|+.|          .+|++||++||.|+ ++.+||+|||+.  ...|+|+|.+++++
T Consensus       142 ~~~~~v~hIlv~~~~~A~~v~~~l~~G----------~~F~~lA~~~S~d~~~~~~GGdlG~~~~~~~~l~~~f~~a~~~  211 (298)
T PRK04405        142 QPKVTVQHILVSKKSTAETVIKKLKDG----------KDFAKLAKKYSTDTATKNKGGKLSAFDSTDTTLDSTFKTAAFK  211 (298)
T ss_pred             hhhEEEEEEEecChHHHHHHHHHHHCC----------CCHHHHHHHhCCCcchhhcCCcCcccccCCCCCCHHHHHHHHc
Confidence            357999999999999999999999998          89999999999998 567899999885  46899999999999


Q ss_pred             CCCCCcc-CcEEeCCeEEEEEEeEEc
Q 043515          135 TPVGVTS-APFKSTHGYHIILCEGRK  159 (160)
Q Consensus       135 L~~GevS-~Piks~~GyhIIkV~~rr  159 (160)
                      |++|+|+ +||+|++|||||+|.+++
T Consensus       212 L~~Geiss~pv~t~~GyhIikv~~~~  237 (298)
T PRK04405        212 LKNGEYTTTPVKTTYGYEVIKMIKHP  237 (298)
T ss_pred             CCCCCccCCCEEeCCeEEEEEEeecC
Confidence            9999995 999999999999999864

>PRK02998 prsA peptidylprolyl isomerase; Reviewed

Probab=99.85  E-value=2.9e-21  Score=161.59  Aligned_cols=91  Identities=33%  Similarity=0.602  Sum_probs=86.6

Q ss_pred             ceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCccccccCCCCcHHHHHHHhcCCC
Q 043515           59 TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPRGKMAGPFQEVSFNTPV  137 (160)
Q Consensus        59 ~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~~~~l~p~f~~a~f~L~~  137 (160)
                      ++++++||+|+++..|++++++|++|          .+|+++|++||.|+ ++.+||++||+..+.++|+|.+++|.|++
T Consensus       133 ~~~~v~~Ilv~~e~~A~~i~~~l~~G----------~~F~~lA~~~S~d~~s~~~gG~lg~~~~~~l~~~~~~a~~~Lk~  202 (283)
T PRK02998        133 PEMKVSHILVKDEKTAKEVKEKVNNG----------EDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDA  202 (283)
T ss_pred             cceEEEEEEeCCHHHHHHHHHHHHCC----------CCHHHHHHHhCCCcchhhcCCcCCCcCCCcchHHHHHHHHcCCC
Confidence            36999999999999999999999998          89999999999998 66789999999999999999999999999


Q ss_pred             CCccCcEEeCCeEEEEEEeEEc
Q 043515          138 GVTSAPFKSTHGYHIILCEGRK  159 (160)
Q Consensus       138 GevS~Piks~~GyhIIkV~~rr  159 (160)
                      |+||+||+|++|||||+|++++
T Consensus       203 GevS~pi~t~~G~hIikv~~~~  224 (283)
T PRK02998        203 GQVSEPVKTTYGYHIIKVTDKK  224 (283)
T ss_pred             CCcCCceEECCEEEEEEEeccC
Confidence            9999999999999999999875

>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional

Probab=99.85  E-value=2.4e-21  Score=168.29  Aligned_cols=97  Identities=25%  Similarity=0.433  Sum_probs=88.0

Q ss_pred             cCCCCCceEEEEEEEecCc------------chHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCcccccc
Q 043515           53 DGLGTCTYVKARHILCEKQ------------GKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP  120 (160)
Q Consensus        53 ~~f~~p~~v~v~hIlv~~~------------~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~  120 (160)
                      +.|..+++++++||+|+.+            ..|++++.+|++|          .+|++||+.||+|+++.+||+|||+.
T Consensus       148 ~~~~~~~~~~~~~I~i~~~~~~s~~~~~~~~~~a~~l~~~l~~g----------~~F~~lA~~yS~~~~a~~gGdlg~~~  217 (413)
T PRK10770        148 NQNDASTELNLSHILIPLPENPTQDQVDEAESQARSIVDQARNG----------ADFGKLAIAYSADQQALKGGQMGWGR  217 (413)
T ss_pred             hhccccceEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHCC----------CCHHHHHHHhCCCcccccCCcCCccc
Confidence            4466688999999999743            2466778888888          89999999999999999999999999


Q ss_pred             CCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeEEc
Q 043515          121 RGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK  159 (160)
Q Consensus       121 ~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr  159 (160)
                      ++.|||+|.+++|+|++|+||+||+|++|||||+|.+++
T Consensus       218 ~~~l~~~~~~~~~~l~~G~is~Pi~t~~GyhIikl~~~~  256 (413)
T PRK10770        218 IQELPGLFAQALSTAKKGDIVGPIRSGVGFHILKVNDLR  256 (413)
T ss_pred             cccccHHHHHHHHhCCCCCCCCcEECCCceEEEEEeeec
Confidence            999999999999999999999999999999999999986

>PRK03002 prsA peptidylprolyl isomerase; Reviewed

Probab=99.85  E-value=3.2e-21  Score=161.41  Aligned_cols=91  Identities=42%  Similarity=0.667  Sum_probs=86.7

Q ss_pred             ceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCccccccCCCCcHHHHHHHhcCCC
Q 043515           59 TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPRGKMAGPFQEVSFNTPV  137 (160)
Q Consensus        59 ~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~~~~l~p~f~~a~f~L~~  137 (160)
                      ++++++||+|+.++.|+.++.+|++|          .+|++||++||.|+ ++.+||++||+..+.|+|+|.+++|+|++
T Consensus       135 ~~~~~~~Ilv~~~~~A~~i~~~l~~G----------~~F~~lA~~~S~d~~s~~~gGdlg~~~~~~l~p~~~~a~~~L~~  204 (285)
T PRK03002        135 PEIKASHILVSDENEAKEIKKKLDAG----------ASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKV  204 (285)
T ss_pred             cceEEEEEEECCHHHHHHHHHHHHCC----------CCHHHHHHHhCCCcchhhcCCccceeccccCCHHHHHHHHcCCC
Confidence            46899999999999999999999998          89999999999998 67889999999999999999999999999


Q ss_pred             CCccCcEEeCCeEEEEEEeEEc
Q 043515          138 GVTSAPFKSTHGYHIILCEGRK  159 (160)
Q Consensus       138 GevS~Piks~~GyhIIkV~~rr  159 (160)
                      |++|+||+|++|||||+|++++
T Consensus       205 GevS~pI~t~~G~hIikv~~~~  226 (285)
T PRK03002        205 GQISNPVKSPNGYHIIKLTDKK  226 (285)
T ss_pred             CCcCCcEEECCEEEEEEEeecC
Confidence            9999999999999999999875

>PRK03095 prsA peptidylprolyl isomerase; Reviewed

Probab=99.85  E-value=4.2e-21  Score=160.88  Aligned_cols=92  Identities=37%  Similarity=0.625  Sum_probs=87.1

Q ss_pred             ceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCccccccCCCCcHHHHHHHhcCCC
Q 043515           59 TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPRGKMAGPFQEVSFNTPV  137 (160)
Q Consensus        59 ~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~~~~l~p~f~~a~f~L~~  137 (160)
                      +.++++||+|+.+..|++++.+|..|          .+|++||++||.|+ ++.+||++||++++.|+|+|.+++++|++
T Consensus       131 ~~v~~~hIlv~~~~~A~~i~~~l~~G----------~~F~~lA~~yS~d~~s~~~gG~lg~~~~~~L~~~~~~al~~L~~  200 (287)
T PRK03095        131 PEIKASHILVKDEATAKKVKEELGQG----------KSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLKK  200 (287)
T ss_pred             ccEEEEEEEeCCHHHHHHHHHHHHCC----------CCHHHHHHHhCCCccccccCCcCceeccccccHHHHHHHHhCCC
Confidence            35999999999999999999999998          89999999999998 67789999999999999999999999999


Q ss_pred             CCccCcEEeCCeEEEEEEeEEcC
Q 043515          138 GVTSAPFKSTHGYHIILCEGRKN  160 (160)
Q Consensus       138 GevS~Piks~~GyhIIkV~~rr~  160 (160)
                      |++|+||+|++|||||+|+++++
T Consensus       201 GevS~pi~t~~G~hIikv~~~~~  223 (287)
T PRK03095        201 DEVSEPVKSQFGYHIIKVTDIKE  223 (287)
T ss_pred             CCcCCceEECCEEEEEEEeeecC
Confidence            99999999999999999999863

>PRK00059 prsA peptidylprolyl isomerase; Provisional

Probab=99.84  E-value=1.5e-20  Score=159.37  Aligned_cols=102  Identities=31%  Similarity=0.474  Sum_probs=95.0

Q ss_pred             CCCccCCC-CCceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCccccccC--CCC
Q 043515           49 GKSADGLG-TCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPR--GKM  124 (160)
Q Consensus        49 ~~n~~~f~-~p~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~~--~~l  124 (160)
                      ..|++.|. .|++++++||++++++.|+++++++++|          .+|+++|++||.++ ++.+||++||++.  +.+
T Consensus       184 ~~~~~~~~~~p~~~~v~~I~~~~~~~a~~~~~~l~~g----------~~F~~la~~~s~~~~~~~~~g~lg~~~~~~~~l  253 (336)
T PRK00059        184 NENKSKFTEKPNTMHLAHILVKTEDEAKKVKKRLDKG----------EDFAKVAKEVSQDPGSKDKGGDLGDVPYSDSGY  253 (336)
T ss_pred             HHhhhhhcCCcceEEEEEEEecCHHHHHHHHHHHHCC----------CCHHHHHHHhCCCcchhhcCCcccccccccCcc
Confidence            46788886 6899999999999999999999999998          89999999999997 7788999999998  789


Q ss_pred             cHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeEEcC
Q 043515          125 AGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN  160 (160)
Q Consensus       125 ~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr~  160 (160)
                      +|+|.+++|.|++|+||+||++++|||||+|+++++
T Consensus       254 ~~~~~~a~~~l~~Gevs~pi~~~~G~~i~~v~~~~~  289 (336)
T PRK00059        254 DKEFMDGAKALKEGEISAPVKTQFGYHIIKAIKKKE  289 (336)
T ss_pred             CHHHHHHHHcCCCCCcCccEecCCeEEEEEEEeecc
Confidence            999999999999999999999999999999999864

>PRK10788 periplasmic folding chaperone; Provisional

Probab=99.80  E-value=1.9e-19  Score=163.99  Aligned_cols=100  Identities=22%  Similarity=0.378  Sum_probs=89.0

Q ss_pred             CCccCCCCCceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCccccccCCCCcHHH
Q 043515           50 KSADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPRGKMAGPF  128 (160)
Q Consensus        50 ~n~~~f~~p~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~~~~l~p~f  128 (160)
                      .|+++|..|++++++||+++.++.|++++.+|+.|          ++|++||++||.|+ ++.+||+|||+.++.|+++|
T Consensus       260 ~~~~~~~~~e~~~~~~i~~~~~~~A~~~~~~l~~G----------~~F~~lA~~~s~d~~s~~~gGdlg~~~~~~~~~~~  329 (623)
T PRK10788        260 QHQDQFTQPERKRYSIIQTKTEAEAKAVLDELKKG----------ADFATLAKEKSTDIISARNGGDLGWLEPATTPDEL  329 (623)
T ss_pred             HHHHhcCChhheeeeEEEECCHHHHHHHHHHHhCC----------CCHHHHHHHhCCCcchhhcCCcccccCCCCCChHH
Confidence            35566777777777777777777889999999998          89999999999998 88999999999999999999


Q ss_pred             HHHHhcCCCCCccCcEEeCCeEEEEEEeEEcC
Q 043515          129 QEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN  160 (160)
Q Consensus       129 ~~a~f~L~~GevS~Piks~~GyhIIkV~~rr~  160 (160)
                      .++++ +++|++|+||+|++|||||+|+++++
T Consensus       330 ~~a~~-~~~G~vs~pv~t~~G~~Iikv~~~~~  360 (623)
T PRK10788        330 KNAGL-KEKGQLSGVIKSSVGFLIVRLDDIQP  360 (623)
T ss_pred             HHHhc-cCCCCcCCcEEECCeEEEEEEEeecc
Confidence            99988 68899999999999999999999864

>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional

Probab=99.79  E-value=1.7e-19  Score=156.71  Aligned_cols=97  Identities=31%  Similarity=0.518  Sum_probs=83.4

Q ss_pred             CCCCCceEEEEEEEecCcc---------hHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCccccccCCC
Q 043515           54 GLGTCTYVKARHILCEKQG---------KINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPRGK  123 (160)
Q Consensus        54 ~f~~p~~v~v~hIlv~~~~---------~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~~~~  123 (160)
                      .+..+++++++||||+...         .++.++.+|..|         ..+|++||++||.|+ ++.+||++||+..+.
T Consensus       260 ~~~~~~e~~~~hIli~~~~~~~~~~a~~~~~~i~~~i~~g---------~~~F~~~A~~~S~d~~s~~~gG~lg~~~~~~  330 (413)
T PRK10770        260 QNISVTEVHARHILLKPSPIMTDEQARAKLEQIAADIKSG---------KTTFAAAAKEFSQDPGSANQGGDLGWATPDI  330 (413)
T ss_pred             ccchHHhhhhhheEECCCCCCCHHHHHHHHHHHHHHHHcC---------cccHHHHHHHhCCCCChHhhCCcCCccCccc
Confidence            3445678999999997532         234556666665         259999999999998 788999999999999


Q ss_pred             CcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeEEc
Q 043515          124 MAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK  159 (160)
Q Consensus       124 l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr  159 (160)
                      |+|+|.+++++|++|++|.||.|++|||||+|++++
T Consensus       331 ~~~~~~~~~~~l~~GeiS~pv~t~~g~~ii~v~~~~  366 (413)
T PRK10770        331 FDPAFRDALMRLNKGQISAPVHSSFGWHLIELLDTR  366 (413)
T ss_pred             cCHHHHHHHHcCCCCCcCCcEEcCCeEEEEEEeecc
Confidence            999999999999999999999999999999999985

>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.7e-19  Score=137.28  Aligned_cols=98  Identities=34%  Similarity=0.606  Sum_probs=80.1

Q ss_pred             CCceEEEEEEEecCcc--------------hHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCC
Q 043515           57 TCTYVKARHILCEKQG--------------KINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRG  122 (160)
Q Consensus        57 ~p~~v~v~hIlv~~~~--------------~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~  122 (160)
                      .|.+|+++||||+.+.              ..++++..|+.  +...++..+.+|++||.++|+|.++..|||||||.++
T Consensus        51 ~p~~Vr~sHlLVKH~~SRrpsSwr~~~it~skeeA~~llk~--~~~~l~~g~~~f~elA~q~SdCSSaKRGGDLG~fgrg  128 (163)
T KOG3259|consen   51 EPARVRCSHLLVKHKGSRRPSSWRSENITRSKEEALDLLKG--YHEDLKSGSGDFEELAKQRSDCSSAKRGGDLGFFGRG  128 (163)
T ss_pred             CccceeEEEEEEccccCCCCcccccccchhhHHHHHHHHHH--hHHHhhcCcccHHHHHHhhcChhhhccCCcccccccc
Confidence            4589999999997632              12333333321  3334455578899999999999999999999999999


Q ss_pred             CCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEe
Q 043515          123 KMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCE  156 (160)
Q Consensus       123 ~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~  156 (160)
                      +|-++|++|+|+|++|++|+||.|+.|+|||+-.
T Consensus       129 qMqk~FEdaafaL~~ge~SgiV~t~SG~HiI~R~  162 (163)
T KOG3259|consen  129 QMQKPFEDAAFALKVGEMSGIVDTDSGVHIIYRT  162 (163)
T ss_pred             cccccchhhhhhcccccccCceecCCceEEEEec
Confidence            9999999999999999999999999999999853

>PRK01326 prsA foldase protein PrsA; Reviewed

Probab=99.78  E-value=2.6e-19  Score=151.53  Aligned_cols=90  Identities=18%  Similarity=0.278  Sum_probs=82.0

Q ss_pred             ceEEEEEEEecCcchHHHHHHHHh-cCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccC-CCCcHHHHHHHhcCC
Q 043515           59 TYVKARHILCEKQGKINEAYKKLQ-DGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPR-GKMAGPFQEVSFNTP  136 (160)
Q Consensus        59 ~~v~v~hIlv~~~~~A~~a~~kl~-~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~-~~l~p~f~~a~f~L~  136 (160)
                      ++++++||++..++.|++++.+|+ .|          ++|++||++||.  ++.+||+|||+.. ..||++|.+++|+|+
T Consensus       144 ~~~~~~~I~~~~~~~A~~i~~~l~~~G----------~dF~~lA~~~S~--s~~~GGdlg~~~~~~~l~~~~~~a~~~Lk  211 (310)
T PRK01326        144 PEVTAQIIRLDNEDKAKSVLEEAKAEG----------ADFAQIAKENTT--TKEKKGEYKFDSGSTNVPEQVKKAAFALD  211 (310)
T ss_pred             ccccchhhhHhhhHHHHHHHHHHHhCC----------CCHHHHHHHhCc--ccccCCcccccCCCCcccHHHHHHHHcCC
Confidence            458999999999999999999998 58          899999999998  6678999999987 468999999999999


Q ss_pred             CCCccCcEEe------CCeEEEEEEeEEcC
Q 043515          137 VGVTSAPFKS------THGYHIILCEGRKN  160 (160)
Q Consensus       137 ~GevS~Piks------~~GyhIIkV~~rr~  160 (160)
                      +|+||+||++      .+|||||+|.++++
T Consensus       212 ~GevS~pv~t~~~~~~~~GyhIikv~~~~~  241 (310)
T PRK01326        212 EDGVSDVISVLDPTAYQSKYYIVKVTKKTE  241 (310)
T ss_pred             CCCcCCceecCCCCcCCceEEEEEEeccCC
Confidence            9999999998      78999999998763

>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family

Probab=99.77  E-value=1.3e-18  Score=140.48  Aligned_cols=100  Identities=9%  Similarity=0.039  Sum_probs=88.8

Q ss_pred             CCCccCCCCCceEEEEEEEecCcc-hHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCCCCcHH
Q 043515           49 GKSADGLGTCTYVKARHILCEKQG-KINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGP  127 (160)
Q Consensus        49 ~~n~~~f~~p~~v~v~hIlv~~~~-~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~~l~p~  127 (160)
                      .+|++.|..+++|+++||+|+.++ .+++++++++.|          .+|+++|.+++... ...+|++||++.++|+|+
T Consensus       127 ~~~~~~f~~~~~~~~~hIlv~~~~~~a~~~~~~l~~g----------~~f~~la~~~~~~~-~~~~~~~~~~~~~~l~~~  195 (232)
T TIGR02925       127 QEHPQLFAERKLYNLQEIALPPDMELLDELRAMVENG----------KPLEDILAWLKAKN-VPFNASSAARPAEQLPAE  195 (232)
T ss_pred             HhCHHhcCCCceEEEEEEEecCChhHHHHHHHHHhcC----------CCHHHHHHHhhhcC-cccccccccCchhhCCHH
Confidence            468889999999999999997544 588899999998          89999999988643 345788999999999999


Q ss_pred             HHHHHhcCCCCCccCcEEeCCeEEEEEEeEEcC
Q 043515          128 FQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN  160 (160)
Q Consensus       128 f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr~  160 (160)
                      |.+++++|++|+|+ ||+|++|||||+|+++++
T Consensus       196 ~~~a~~~l~~G~is-~v~s~~G~hiikv~~~~~  227 (232)
T TIGR02925       196 ILAVLAKLKPGAPL-VVQGPNNVLILVLADAQP  227 (232)
T ss_pred             HHHHHHhCCCCCeE-EeecCCceEEEEEecccc
Confidence            99999999999999 899999999999999864

Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.

>PRK12450 foldase protein PrsA; Reviewed

Probab=99.75  E-value=5e-18  Score=143.75  Aligned_cols=89  Identities=21%  Similarity=0.284  Sum_probs=79.2

Q ss_pred             ceEEEEEEEecCcchHHHHHHHHh-cCCccCCCCCChhcHHHHHHHhCCCCCCCCCCcccccc-CCCCcHHHHHHHhcCC
Q 043515           59 TYVKARHILCEKQGKINEAYKKLQ-DGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP-RGKMAGPFQEVSFNTP  136 (160)
Q Consensus        59 ~~v~v~hIlv~~~~~A~~a~~kl~-~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~-~~~l~p~f~~a~f~L~  136 (160)
                      +.++++||++..++.|++++++|+ .|          ++|++||++||.|+  .+||++||.. ...|+|+|.+++|.|+
T Consensus       147 ~~~~~~~I~~~~~~~A~~i~~~l~~~G----------~dF~~lAk~~S~~~--~~~g~~~f~~~~~~l~~ef~~aa~~Lk  214 (309)
T PRK12450        147 PTMTAEIMQFEKEEDAKAALEAVKAEG----------ADFAAIAKEKTIAA--DKKTTYTFDSGETTLPAEVVRAASGLK  214 (309)
T ss_pred             ccceeEEEEeCCHHHHHHHHHHHHhcC----------CCHHHHHHHhCCCc--ccCCcccccCCCCCCCHHHHHHHHcCC
Confidence            468999999999999999999998 48          89999999999985  3578999875 3579999999999999


Q ss_pred             CCCccC------cEEeCCeEEEEEEeEEc
Q 043515          137 VGVTSA------PFKSTHGYHIILCEGRK  159 (160)
Q Consensus       137 ~GevS~------Piks~~GyhIIkV~~rr  159 (160)
                      +|+||+      ||+|++|||||+|++++
T Consensus       215 ~GevS~~i~~~~pv~t~~GyhIikl~~~~  243 (309)
T PRK12450        215 EGNRSEIITALDPATSKRTYHIIKVTKKA  243 (309)
T ss_pred             CCCccccccCCCccccCCceEEEEEeccc
Confidence            999998      55799999999999875

>COG0760 SurA Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=3.7e-16  Score=126.47  Aligned_cols=99  Identities=40%  Similarity=0.664  Sum_probs=87.0

Q ss_pred             CCceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCC-CCCccccccCCCCcHHHHHHHhcC
Q 043515           57 TCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGK-KGGDLGWFPRGKMAGPFQEVSFNT  135 (160)
Q Consensus        57 ~p~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~-~GGdlG~~~~~~l~p~f~~a~f~L  135 (160)
                      .+++++++||+++.++.+.+++.++..+...     .+.+|+++|++||.|++.. .||++||...+.|+|+|.++++.+
T Consensus       165 ~~~~~~~~~i~~~~~~~a~~~~~~~~~~~~~-----~~~~f~~~a~~~s~~~~~~~~g~~~~~~~~~~~~p~f~~a~~~~  239 (320)
T COG0760         165 KVTEVQARHILVKAEAKAKEALALLKKGVRE-----AKADFAELAKKQSEDPSSKNGGGLLGWNKKGQLVPEFRKAAFIL  239 (320)
T ss_pred             HHHHHhhcccccCchHhHHHHHHHHHhcccc-----ccCCHHHHHHHcCCCcccccCCccccccCccccChHHHHHHHhc
Confidence            3578999999999999999999988766211     3479999999999999555 477888999999999999999999


Q ss_pred             CCCCccCcEEeCCeEEEEEEeEEcC
Q 043515          136 PVGVTSAPFKSTHGYHIILCEGRKN  160 (160)
Q Consensus       136 ~~GevS~Piks~~GyhIIkV~~rr~  160 (160)
                      ++|+++.||+|.+|||||+|+++++
T Consensus       240 ~~g~~~~pv~t~~g~~ii~v~~~~~  264 (320)
T COG0760         240 KVGEVSAPVKTSFGYHIIKVEKKRD  264 (320)
T ss_pred             cCcccccccccchHHHHHHHHhhhh
Confidence            9999999999999999999988763

>PF13145 Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2KGJ_A

Probab=99.25  E-value=7.4e-12  Score=89.25  Aligned_cols=97  Identities=21%  Similarity=0.332  Sum_probs=70.4

Q ss_pred             CCccCCCCCceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccC-CCCcHHH
Q 043515           50 KSADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPR-GKMAGPF  128 (160)
Q Consensus        50 ~n~~~f~~p~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~-~~l~p~f  128 (160)
                      .|++.|..|+.+.+.+++++....++.+.+.++.+        ...+|.+++..++.+.     .+++|... ..|+++|
T Consensus        12 ~n~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~   78 (121)
T PF13145_consen   12 ENKDRFSQPERRIFQIIFFKAEDAAEAAKALAKKK--------AGEDFAALAKKYSIDQ-----SDLGIFTDESDLPPEF   78 (121)
T ss_dssp             H-HHHH--EEEEEEEEEEESSCCHHHHHHHHHHHH--------CHHHHHHHHHCTHCCC-----CCCCCCETTHHH-HHH
T ss_pred             HHHHHhCCcccEEEEEEEeCCHHHHHHHHHHHhhc--------ccchHHHHHHhcCCcc-----ccccccccccccCHHH
Confidence            58899999999778877777766666555555542        1267888888877663     34446555 3588999


Q ss_pred             HHHHhcCCCCCccCcEEeCCeEEEEEEeEEc
Q 043515          129 QEVSFNTPVGVTSAPFKSTHGYHIILCEGRK  159 (160)
Q Consensus       129 ~~a~f~L~~GevS~Piks~~GyhIIkV~~rr  159 (160)
                      .+++|.|++|+||+||++++|||||+|.++.
T Consensus        79 ~~~~~~l~~g~~s~~i~~~~~~~v~~v~~~~  109 (121)
T PF13145_consen   79 ADALFKLKPGEVSGPIESGNGYYVVKVKERN  109 (121)
T ss_dssp             HCCHTT-STT-EEEEEEETTEEEEEEEEEEE
T ss_pred             HHHHhcCCCCCeeeeEEECCEEEEEEEEeec
Confidence            9999999999999999999999999999875

>PRK10788 periplasmic folding chaperone; Provisional

Probab=92.04  E-value=0.59  Score=43.09  Aligned_cols=43  Identities=14%  Similarity=0.231  Sum_probs=35.3

Q ss_pred             ccccCCCCcHHHHHHHhcCCCCCccCcEEe-----CCeEEEEEEeEEc
Q 043515          117 GWFPRGKMAGPFQEVSFNTPVGVTSAPFKS-----THGYHIILCEGRK  159 (160)
Q Consensus       117 G~~~~~~l~p~f~~a~f~L~~GevS~Piks-----~~GyhIIkV~~rr  159 (160)
                      .|+++..++|.+..++|.++.|.++.|+..     ..||.|++|.++.
T Consensus       532 ~~~~r~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~v~~v~~v~  579 (623)
T PRK10788        532 KTLSRTSQDDPLSQAAFALPLPAKDKPSYGMAQDMQGNVVLIALDEVT  579 (623)
T ss_pred             cceecCCCChHHHHHHhcCCCCCCCCCeeEEEEcCCCCEEEEEEcccc
Confidence            467766676789999999999998888755     5789999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	160
1eq3_A	96	Nmr Structure Of Human Parvulin Hpar14 Length = 96		4e-21
3ui4_A	101	0.8 A Resolution Crystal Structure Of Human Parvuli		6e-21
1fjd_A	104	Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMER		6e-21
1jns_A	92	Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRA		1e-11
2rqs_A	97	3d Structure Of Pin From The Psychrophilic Archeon		2e-11
1zk6_A	93	Nmr Solution Structure Of B. Subtilis Prsa Ppiase L		2e-11
3rfw_A	252	The Virulence Factor Peb4 And The Periplasmic Prote		2e-10
1nmw_A	114	Solution Structure Of The Ppiase Domain Of Human Pi		4e-10
3kad_A	167	Structure-Guided Design Of Alpha-Amino Acid-Derived		4e-10
1j6y_A	139	Solution Structure Of Pin1at From Arabidopsis Thali		4e-10
3ik8_A	123	Structure-Based Design Of Novel Pin1 Inhibitors (I)		9e-10
2zqu_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		9e-10
3kac_A	123	Structure-Guided Design Of Alpha-Amino Acid-Derived		1e-09
2zr5_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		1e-09
2zr4_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		1e-09
2f21_A	162	Human Pin1 Fip Mutant Length = 162		1e-09
2zr6_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		1e-09
1pin_A	163	Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo		1e-09
1zcn_A	161	Human Pin1 Ng Mutant Length = 161		1e-09
2zqv_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		1e-09
3tcz_A	158	Human Pin1 Bound To Cis Peptidomimetic Inhibitor Le		1e-09
3tc5_A	166	Selective Targeting Of Disease-Relevant Protein Bin		1e-09
1f8a_B	167	Structural Basis For The Phosphoserine-Proline Reco		1e-09
2itk_A	167	Human Pin1 Bound To D-Peptide Length = 167		1e-09
2zqt_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		8e-09
1yw5_A	177	Peptidyl-Prolyl Isomerase Ess1 From Candida Albican		1e-08
2zqs_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		1e-08
4g2p_A	110	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		1e-07
1m5y_A	408	Crystallographic Structure Of Sura, A Molecular Cha		4e-06
2lj4_A	115	Solution Structure Of The Tbpin1 Length = 115		2e-05
2jzv_A	111	Solution Structure Of S. Aureus Prsa-Ppiase Length		4e-04

>pdb|1EQ3|A Chain A, Nmr Structure Of Human Parvulin Hpar14 Length = 96

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 63/105 (60%), Gaps = 17/105 (16%)
Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
           VK RHILCEK GKI EA +KL+ G            F+++AA+YSE    ++GGDLGW  
Sbjct: 3   VKVRHILCEKHGKIMEAMEKLKSGM----------RFNEVAAQYSE-DKARQGGDLGWMT 51
Query: 121 RGKMAGPFQEVSFNTPVG------VTSAPFKSTHGYHIILCEGRK 159
           RG M GPFQE +F  PV        T  P K+  GYHII+ EGRK
Sbjct: 52  RGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 96

>pdb|3UI4|A Chain A, 0.8 A Resolution Crystal Structure Of Human Parvulin 14 Length = 101

Iteration: 1
 Score = 96.7 bits (239), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 63/105 (60%), Gaps = 17/105 (16%)
Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
           VK RHILCEK GKI EA +KL+ G            F+++AA+YSE    ++GGDLGW  
Sbjct: 8   VKVRHILCEKHGKIMEAMEKLKSGM----------RFNEVAAQYSE-DKARQGGDLGWMT 56
Query: 121 RGKMAGPFQEVSFNTPVG------VTSAPFKSTHGYHIILCEGRK 159
           RG M GPFQE +F  PV        T  P K+  GYHII+ EGRK
Sbjct: 57  RGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 101

>pdb|1FJD|A Chain A, Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMERASE, Hpar14 Length = 104

Iteration: 1
 Score = 96.3 bits (238), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 53/110 (48%), Positives = 65/110 (59%), Gaps = 17/110 (15%)
Query: 56  GTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGD 115
           G    VK RHILCEK GKI EA +KL+ G            F+++AA+YSE  + ++GGD
Sbjct: 6   GGGNAVKVRHILCEKHGKIMEAMEKLKSGM----------RFNEVAAQYSEDKA-RQGGD 54
Query: 116 LGWFPRGKMAGPFQEVSFNTPVG------VTSAPFKSTHGYHIILCEGRK 159
           LGW  RG M GPFQE +F  PV        T  P K+  GYHII+ EGRK
Sbjct: 55  LGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 104

>pdb|1JNS|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS- Isomerase Parvulin 10 Length = 92

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 10/91 (10%)
Query: 63  ARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRG 122
           A HIL +++    +  +++++G          A+F K+A ++S CPSGK+GGDLG F +G
Sbjct: 6   ALHILVKEEKLALDLLEQIKNG----------ADFGKLAKKHSICPSGKRGGDLGEFRQG 55
Query: 123 KMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
           +M   F +V F+ PV   + P  +  GYHII
Sbjct: 56  QMVPAFDKVVFSCPVLEPTGPLHTQFGYHII 86

>pdb|2RQS|A Chain A, 3d Structure Of Pin From The Psychrophilic Archeon Cenarcheaum Symbiosum (Cspin) Length = 97

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 11/94 (11%)
Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYS-ECPSGKKGGDLGWF 119
           +K  HIL +KQG+     ++L+ G           +F K+A E S +  S K+ G LG+F
Sbjct: 10  IKCSHILVKKQGEALAVQERLKAGE----------KFGKLAKELSIDGGSAKRDGSLGYF 59
Query: 120 PRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
            RGKM  PF++ +F   VG  S P KS  GYH+I
Sbjct: 60  GRGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVI 93

>pdb|1ZK6|A Chain A, Nmr Solution Structure Of B. Subtilis Prsa Ppiase Length = 93

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
           ++A HIL   +    E  KKL+ G           +F  +A EYS   S  KGGDLGWF 
Sbjct: 5   IRASHILVADKKTAEEVEKKLKKG----------EKFEDLAKEYSTDSSASKGGDLGWFA 54
Query: 121 R-GKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
           + G+M   F + +F    G  S P K+ +GYHII
Sbjct: 55  KEGQMDETFSKAAFKLKTGEVSDPVKTQYGYHII 88

>pdb|3RFW|A Chain A, The Virulence Factor Peb4 And The Periplasmic Protein Cj1289 Are Two Structurally-Related Sura-Like Chaperones In The Human Pathogen Campylobacter Jejuni Length = 252

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 61  VKARHILC--EKQGK--INEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGK-KGGD 115
           V+A+HIL   EK+ K  INE  K L+   L        A+FS++A E S  P  K +GG+
Sbjct: 113 VQAKHILVATEKEAKDIINE-LKGLKGKELD-------AKFSELAKEKSIDPGSKNQGGE 164
Query: 116 LGWFPRGKMAGPFQEVSFNTPVG-VTSAPFKSTHGYHIILCEG 157
           LGWF +  M  PF + +F    G +T+ P K+  GYH+IL E 
Sbjct: 165 LGWFDQSTMVKPFTDAAFALKNGTITTTPVKTNFGYHVILKEN 207

>pdb|1NMW|A Chain A, Solution Structure Of The Ppiase Domain Of Human Pin1 Length = 114

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69  EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
           EK  +  E   +L +G++    K  + +F  +A+++S+C S K  GDLG F RG+M  PF
Sbjct: 27  EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 85
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
           ++ SF    G  S P  +  G HIIL
Sbjct: 86  EDASFALRTGEMSGPVFTDSGIHIIL 111

>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1 Inhibitors Length = 167

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 69  EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
           EK  +  E   +L +G++    K  + +F  +A+++S+C S K  GDLG F RG+MA PF
Sbjct: 80  EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMAKPF 138
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
           ++ SF    G  S P  +  G HIIL
Sbjct: 139 EDASFALRTGEMSGPVFTDSGIHIIL 164

>pdb|1J6Y|A Chain A, Solution Structure Of Pin1at From Arabidopsis Thaliana Length = 139

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 16/115 (13%)
Query: 55  LGTCTYVKARHILCEKQGKINEAYKKLQDGWL----SNGDKVPQ------------AEFS 98
           + +   VKA HIL + QG   +A  K  +G +    +    V Q            A F 
Sbjct: 21  MASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFE 80
Query: 99  KIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
           ++A   S+C S K+GGDLG F RG+M  PF+E ++   VG  S    +  G HII
Sbjct: 81  EVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHII 135

>pdb|3IK8|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I) Length = 123

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69  EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
           E+  +  E   +L +G++    K  + +F  +A+++S+C S K  GDLG F RG+M  PF
Sbjct: 36  EQITRTQEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 94
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
           ++ SF    G  S P  +  G HIIL
Sbjct: 95  EDASFALRTGEMSGPVFTDSGIHIIL 120

>pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69  EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
           EK  +  E   +L +G++    K  + +F  +A+++S+C S K  GDLG F RG+M  PF
Sbjct: 76  EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 134
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
           ++ SF    G  S P  +  G HIIL
Sbjct: 135 EDASFALRTGEMSGPVFTDSGIHIIL 160

>pdb|3KAC|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1 Inhibitors Length = 123

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69  EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
           E+  +  E   +L +G++    K  + +F  +A+++S+C S K  GDLG F RG+M  PF
Sbjct: 36  EQITRTQEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 94
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
           ++ SF    G  S P  +  G HIIL
Sbjct: 95  EDASFALRTGEMSGPVFTDSGIHIIL 120

>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69  EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
           EK  +  E   +L +G++    K  + +F  +A+++S+C S K  GDLG F RG+M  PF
Sbjct: 76  EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 134
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
           ++ SF    G  S P  +  G HIIL
Sbjct: 135 EDASFALRTGEMSGPVFTDSGIHIIL 160

>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69  EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
           EK  +  E   +L +G++    K  + +F  +A+++S+C S K  GDLG F RG+M  PF
Sbjct: 76  EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 134
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
           ++ SF    G  S P  +  G HIIL
Sbjct: 135 EDASFALRTGEMSGPVFTDSGIHIIL 160

>pdb|2F21|A Chain A, Human Pin1 Fip Mutant Length = 162

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69  EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
           EK  +  E   +L +G++    K  + +F  +A+++S+C S K  GDLG F RG+M  PF
Sbjct: 75  EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 133
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
           ++ SF    G  S P  +  G HIIL
Sbjct: 134 EDASFALRTGEMSGPVFTDSGIHIIL 159

>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69  EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
           EK  +  E   +L +G++    K  + +F  +A+++S+C S K  GDLG F RG+M  PF
Sbjct: 76  EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 134
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
           ++ SF    G  S P  +  G HIIL
Sbjct: 135 EDASFALRTGEMSGPVFTDSGIHIIL 160

>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens Length = 163

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69  EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
           EK  +  E   +L +G++    K  + +F  +A+++S+C S K  GDLG F RG+M  PF
Sbjct: 76  EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 134
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
           ++ SF    G  S P  +  G HIIL
Sbjct: 135 EDASFALRTGEMSGPVFTDSGIHIIL 160

>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant Length = 161

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69  EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
           EK  +  E   +L +G++    K  + +F  +A+++S+C S K  GDLG F RG+M  PF
Sbjct: 74  EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 132
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
           ++ SF    G  S P  +  G HIIL
Sbjct: 133 EDASFALRTGEMSGPVFTDSGIHIIL 158

>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69  EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
           EK  +  E   +L +G++    K  + +F  +A+++S+C S K  GDLG F RG+M  PF
Sbjct: 76  EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 134
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
           ++ SF    G  S P  +  G HIIL
Sbjct: 135 EDASFALRTGEMSGPVFTDSGIHIIL 160

>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor Length = 158

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69  EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
           EK  +  E   +L +G++    K  + +F  +A+++S+C S K  GDLG F RG+M  PF
Sbjct: 71  EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 129
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
           ++ SF    G  S P  +  G HIIL
Sbjct: 130 EDASFALRTGEMSGPVFTDSGIHIIL 155

>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding Domains By O- Phosphorylated Natural Product Derivatives Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69  EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
           EK  +  E   +L +G++    K  + +F  +A+++S+C S K  GDLG F RG+M  PF
Sbjct: 79  EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 137
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
           ++ SF    G  S P  +  G HIIL
Sbjct: 138 EDASFALRTGEMSGPVFTDSGIHIIL 163

>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition By Group Iv Ww Domains Length = 167

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69  EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
           EK  +  E   +L +G++    K  + +F  +A+++S+C S K  GDLG F RG+M  PF
Sbjct: 80  EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 138
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
           ++ SF    G  S P  +  G HIIL
Sbjct: 139 EDASFALRTGEMSGPVFTDSGIHIIL 164

>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide Length = 167

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 69  EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
           EK  +  E   +L +G++    K  + +F  +A+++S+C S K  GDLG F RG+M  PF
Sbjct: 80  EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPF 138
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
           ++ SF    G  S P  +  G HIIL
Sbjct: 139 EDASFALRTGEMSGPVFTDSGIHIIL 164

>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 69  EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
           EK  +  E   +L +G++    K  + +F  +A+++S+C S K  GDLG F RG+   PF
Sbjct: 76  EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQAQKPF 134
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
           ++ SF    G  S P  +  G HIIL
Sbjct: 135 EDASFALRTGEMSGPVFTDSGIHIIL 160

>pdb|1YW5|A Chain A, Peptidyl-Prolyl Isomerase Ess1 From Candida Albicans Length = 177

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 94  QAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
           + + S++A   S+C S  +GGDLG+F +G+M  PF+E +FN  VG  S   ++  G HI+
Sbjct: 114 EVKLSELANTESDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSNIIETNSGVHIL 173
Query: 154 LCEG 157
              G
Sbjct: 174 QRTG 177

>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 69  EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF 128
           EK  +  E   +L +G++    K  + +F  +A+++S+  S K  GDLG F RG+M  PF
Sbjct: 76  EKITRTKEEALELINGYIQK-IKSGEEDFESLASQFSDASSAKARGDLGAFSRGQMQKPF 134
Query: 129 QEVSFNTPVGVTSAPFKSTHGYHIIL 154
           ++ SF    G  S P  +  G HIIL
Sbjct: 135 EDASFALRTGEMSGPVFTDSGIHIIL 160

>pdb|4G2P|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase Domain Ii Of Molecular Chaperone Sura From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. 14028s Length = 110

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 57  TCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGD 115
           + T V ARHIL +     N+   +L+   ++   K  +  F+  A EYS+ P S  +GGD
Sbjct: 5   SVTEVHARHILLKPSPIXNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGD 64
Query: 116 LGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII-LCEGRK 159
           LGW         F++       G  SAP  S+ G+H+I L + RK
Sbjct: 65  LGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLIELLDTRK 109

>pdb|1M5Y|A Chain A, Crystallographic Structure Of Sura, A Molecular Chaperone That Facilitates Outer Membrane Porin Folding Length = 408

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 57  TCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGD 115
           + T V ARHIL +    + +   +++   ++   K  +  F+  A E+S+ P S  +GGD
Sbjct: 261 SVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGD 320
Query: 116 LGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN 160
           LGW         F++       G  SAP  S+ G+H+I     +N
Sbjct: 321 LGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRN 365

>pdb|2LJ4|A Chain A, Solution Structure Of The Tbpin1 Length = 115

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 94  QAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
           +  F + A++ S+C S   GGDLG+F  G+M  PF++      +G  S   ++  G HII
Sbjct: 52  EVSFEEAASQRSDCGSYASGGDLGFFSSGEMMKPFEDAVRALKIGDISPIVQTDSGLHII 111

>pdb|2JZV|A Chain A, Solution Structure Of S. Aureus Prsa-Ppiase Length = 111

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 62  KARHIL-------CEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYS-ECPSGKKG 113
           KA HIL        +K+G  ++  K+  +       K P ++F +IA + S +  S KK 
Sbjct: 9   KASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDP-SKFGEIAKKESMDTGSAKKD 67
Query: 114 GDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCE 156
           G+LG+  +G+    F++  F    G  S   KS+ GYHII  +
Sbjct: 68  GELGYVLKGQTDKDFEKALFKLKDGEVSEVVKSSFGYHIIKAD 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
1jns_A	92	Peptidyl-prolyl CIS-trans isomerase C; alpha-beta	3e-32
3ui4_A	101	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	7e-32
4g2p_A	110	Chaperone SURA; structural genomics, PSI-biology,	4e-29
2rqs_A	97	Parvulin-like peptidyl-prolyl isomerase; CIS/trans	6e-29
1zk6_A	93	Foldase protein PRSA; alpha/beta structure, isomer	3e-28
2pv1_A	103	Chaperone SURA; surviVal protein A, peptidyl-proly	6e-28
3gpk_A	112	PPIC-type peptidyl-prolyl CIS-trans isomerase; rot	2e-27
3i6c_A	123	Peptidyl-prolyl CIS-trans isomerase NIMA- interact	1e-26
3rfw_A	252	Cell-binding factor 2; SURA-like, chaperone; 2.20A	2e-26
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	3e-26
1j6y_A	139	Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN	4e-26
2kgj_A	102	Peptidyl-prolyl CIS-trans isomerase D; prolyl isom	5e-26
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	1e-25
2jzv_A	111	Foldase protein PRSA; ppiase, parvulin, proline is	2e-24
3nrk_A	325	LIC12922; NC domain, parvulin domain, SURA homolog	9e-20
1m5y_A	408	SurviVal protein, surviVal protein SURA; surviVal	1e-17
1m5y_A	408	SurviVal protein, surviVal protein SURA; surviVal	5e-16
3rgc_A	252	Possible periplasmic protein; ppiase, chaperone; 2	2e-07

>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A Length = 92

 Score =  109 bits (275), Expect = 3e-32
 Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 10/98 (10%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
             A HIL +++    +  +++++G          A+F K+A ++S CPSGK+GGDLG F 
Sbjct: 4   AAALHILVKEEKLALDLLEQIKNG----------ADFGKLAKKHSICPSGKRGGDLGEFR 53

Query: 121 RGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGR 158
           +G+M   F +V F+ PV   + P  +  GYHII    R
Sbjct: 54  QGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYR 91

>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} PDB: 3ui5_A 1fjd_A 1eq3_A Length = 101

 Score =  108 bits (273), Expect = 7e-32
 Identities = 52/105 (49%), Positives = 63/105 (60%), Gaps = 17/105 (16%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
           VK RHILCEK GKI EA +KL+ G            F+++AA+YSE    ++GGDLGW  
Sbjct: 8   VKVRHILCEKHGKIMEAMEKLKSG----------MRFNEVAAQYSE-DKARQGGDLGWMT 56

Query: 121 RGKMAGPFQEVSFNTPVG------VTSAPFKSTHGYHIILCEGRK 159
           RG M GPFQE +F  PV        T  P K+  GYHII+ EGRK
Sbjct: 57  RGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 101

>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp} Length = 110

 Score =  101 bits (255), Expect = 4e-29
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 19/109 (17%)

Query: 61  VKARHILC---------EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SG 110
           V ARHIL          + + K+ E    ++ G         +  F+  A EYS+ P S 
Sbjct: 9   VHARHILLKPSPIMNDQQARLKLEEIAADIKSG---------KTTFAAAAKEYSQDPGSA 59

Query: 111 KKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK 159
            +GGDLGW         F++       G  SAP  S+ G+H+I     +
Sbjct: 60  NQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLIELLDTR 108

>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum} Length = 97

 Score =  101 bits (253), Expect = 6e-29
 Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 11/98 (11%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSE-CPSGKKGGDLGWF 119
           +K  HIL +KQG+     ++L+ G           +F K+A E S    S K+ G LG+F
Sbjct: 10  IKCSHILVKKQGEALAVQERLKAG----------EKFGKLAKELSIDGGSAKRDGSLGYF 59

Query: 120 PRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEG 157
            RGKM  PF++ +F   VG  S P KS  GYH+I   G
Sbjct: 60  GRGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVIKRLG 97

>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis} Length = 93

 Score = 99.2 bits (248), Expect = 3e-28
 Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 11/97 (11%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWF- 119
           ++A HIL   +    E  KKL+ G           +F  +A EYS   S  KGGDLGWF 
Sbjct: 5   IRASHILVADKKTAEEVEKKLKKG----------EKFEDLAKEYSTDSSASKGGDLGWFA 54

Query: 120 PRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCE 156
             G+M   F + +F    G  S P K+ +GYHII   
Sbjct: 55  KEGQMDETFSKAAFKLKTGEVSDPVKTQYGYHIIKKT 91

>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A Length = 103

 Score = 98.9 bits (247), Expect = 6e-28
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 22/113 (19%)

Query: 59  TYVKARHIL------------CEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSE 106
           T +   HIL             E + +      + ++G          A+F K+A  +S 
Sbjct: 1   TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNG----------ADFGKLAIAHSA 50

Query: 107 CPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK 159
                 GG +GW    ++ G F +       G    P +S  G+HI+     +
Sbjct: 51  DQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLR 103

>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans} Length = 112

 Score = 98.1 bits (245), Expect = 2e-27
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 18/107 (16%)

Query: 61  VKARHIL--------CEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKK 112
            +   I          +      +  ++L+ G            F   A +YSE  +   
Sbjct: 8   YRIGEIFLAATEENKPQVFANAEKIVEQLKQG----------GSFVAYARQYSEASTAAV 57

Query: 113 GGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK 159
           GGDLGW    ++       + +   G  + P +   G+ I+    ++
Sbjct: 58  GGDLGWIRLAQLPTELATTAASMGPGQLAGPVEIRGGFSILYLIDKR 104

>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A Length = 123

 Score = 96.3 bits (240), Expect = 1e-26
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 12/106 (11%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAE------------FSKIAAEYSECP 108
           V+  H+L +       +  + +    +  + +                F  +A+++S+C 
Sbjct: 15  VRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQFSDCS 74

Query: 109 SGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIIL 154
           S K  GDLG F RG+M  PF++ SF    G  S P  +  G HIIL
Sbjct: 75  SAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIIL 120

>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni} Length = 252

 Score = 99.1 bits (247), Expect = 2e-26
 Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 6/101 (5%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWF 119
           V+A+HIL   + +  +   +L+       D    A+FS++A E S  P S  +GG+LGWF
Sbjct: 113 VQAKHILVATEKEAKDIINELKGLKGKELD----AKFSELAKEKSIDPGSKNQGGELGWF 168

Query: 120 PRGKMAGPFQEVSFNTPVG-VTSAPFKSTHGYHIILCEGRK 159
            +  M  PF + +F    G +T+ P K+  GYH+IL E  +
Sbjct: 169 DQSTMVKPFTDAAFALKNGTITTTPVKTNFGYHVILKENSQ 209

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} Length = 177

 Score = 96.9 bits (241), Expect = 3e-26
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 17/112 (15%)

Query: 61  VKARHILCEKQGKIN---------------EAYKKLQDGWLSNGDKVPQAEFSKIAAEYS 105
           V+  H+L +                     E+ + L+           + + S++A   S
Sbjct: 68  VRVSHLLIKNNQSRKPKSWKSPDGISRTRDESIQILKK--HLERILSGEVKLSELANTES 125

Query: 106 ECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEG 157
           +C S  +GGDLG+F +G+M  PF+E +FN  VG  S   ++  G HI+   G
Sbjct: 126 DCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSNIIETNSGVHILQRTG 177

>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1 Length = 139

 Score = 95.2 bits (237), Expect = 4e-26
 Identities = 37/113 (32%), Positives = 50/113 (44%), Gaps = 16/113 (14%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAE----------------FSKIAAEY 104
           VKA HIL + QG   +A  K  +G +        A                 F ++A   
Sbjct: 27  VKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRV 86

Query: 105 SECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEG 157
           S+C S K+GGDLG F RG+M  PF+E ++   VG  S    +  G HII    
Sbjct: 87  SDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 139

>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli} Length = 102

 Score = 94.2 bits (235), Expect = 5e-26
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 12/100 (12%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSE-CPSGKKGGDLGWF 119
            +   I  + + +      +L  G           +F+ +A E S    S + GGD+GW 
Sbjct: 6   TRYSIIQTKTEDEAKAVLDELNKG----------GDFAALAKEKSADIISARNGGDMGWL 55

Query: 120 PRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK 159
               +    +        G  S   KS+ G+ I+  +  +
Sbjct: 56  EDATIPDELKNAGLKEK-GQLSGVIKSSVGFLIVRLDDIQ 94

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... Length = 166

 Score = 95.3 bits (237), Expect = 1e-25
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 12/106 (11%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAE------------FSKIAAEYSECP 108
           V+  H+L +       +  + +    +  + +                F  +A+++S+C 
Sbjct: 58  VRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCS 117

Query: 109 SGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIIL 154
           S K  GDLG F RG+M  PF++ SF    G  S P  +  G HIIL
Sbjct: 118 SAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIIL 163

>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus} Length = 111

 Score = 90.4 bits (225), Expect = 2e-24
 Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 25/109 (22%)

Query: 61  VKARHILC---------------EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYS 105
            KA HIL                E + K  E  K++             ++F +IA + S
Sbjct: 8   KKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKD---------PSKFGEIAKKES 58

Query: 106 E-CPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
               S KK G+LG+  +G+    F++  F    G  S   KS+ GYHII
Sbjct: 59  MDTGSAKKDGELGYVLKGQTDKDFEKALFKLKDGEVSEVVKSSFGYHII 107

>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid} Length = 325

 Score = 83.1 bits (205), Expect = 9e-20
 Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 14/108 (12%)

Query: 61  VKARHIL-----CEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGG 114
            +   I       +++ ++ +   +++   L++      + F+ IA      P    + G
Sbjct: 162 YRIISIAPENDSIQEENRLYKEVSEIRKSILADP-----SSFALIAGSPRNDPALRARRG 216

Query: 115 DLGWFPRGKMAGPFQ---EVSFNTPVGVTSAPFKSTHGYHIILCEGRK 159
            + W     +    +    ++   P G  S  F+     + IL    K
Sbjct: 217 MVEWISSFDLYKYSKITATIAAPLPNGGVSEVFRDERKRYCILKIEGK 264

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A Length = 408

 Score = 77.4 bits (190), Expect = 1e-17
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 1/101 (0%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWF 119
           V ARHIL +    + +   +++   ++   K  +  F+  A E+S+ P S  +GGDLGW 
Sbjct: 265 VHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWA 324

Query: 120 PRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN 160
                   F++       G  SAP  S+ G+H+I     +N
Sbjct: 325 TPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRN 365

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A Length = 408

 Score = 73.2 bits (179), Expect = 5e-16
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 12/108 (11%)

Query: 59  TYVKARHILCEK-----QGKINEAYKKLQDGW--LSNGDKVPQAEFSKIAAEYSECPSGK 111
           T +   HIL          ++NEA  + +       NG     A+F K+A  +S      
Sbjct: 152 TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNG-----ADFGKLAIAHSADQQAL 206

Query: 112 KGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK 159
            GG +GW    ++ G F +       G    P +S  G+HI+     +
Sbjct: 207 NGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLR 254

>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni} Length = 252

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 6/61 (9%), Positives = 12/61 (19%)

Query: 99  KIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGR 158
           +                               +    PVG  S      +GY +   + +
Sbjct: 147 QTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGSFSPVLNGKNGYELYEVKSK 206

Query: 159 K 159
            
Sbjct: 207 D 207

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
1jns_A	92	Peptidyl-prolyl CIS-trans isomerase C; alpha-beta	99.95
3gpk_A	112	PPIC-type peptidyl-prolyl CIS-trans isomerase; rot	99.95
4g2p_A	110	Chaperone SURA; structural genomics, PSI-biology,	99.95
3ui4_A	101	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	99.95
2rqs_A	97	Parvulin-like peptidyl-prolyl isomerase; CIS/trans	99.95
3i6c_A	123	Peptidyl-prolyl CIS-trans isomerase NIMA- interact	99.95
2lj4_A	115	Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT;	99.94
1zk6_A	93	Foldase protein PRSA; alpha/beta structure, isomer	99.94
2pv1_A	103	Chaperone SURA; surviVal protein A, peptidyl-proly	99.94
2kgj_A	102	Peptidyl-prolyl CIS-trans isomerase D; prolyl isom	99.93
2jzv_A	111	Foldase protein PRSA; ppiase, parvulin, proline is	99.93
1j6y_A	139	Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN	99.92
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	99.92
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	99.92
3rfw_A	252	Cell-binding factor 2; SURA-like, chaperone; 2.20A	99.9
3nrk_A	325	LIC12922; NC domain, parvulin domain, SURA homolog	99.84
1m5y_A	408	SurviVal protein, surviVal protein SURA; surviVal	99.83
1m5y_A	408	SurviVal protein, surviVal protein SURA; surviVal	99.78
3rgc_A	252	Possible periplasmic protein; ppiase, chaperone; 2	99.67

>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A

Probab=99.95  E-value=1.5e-28  Score=172.77  Aligned_cols=91  Identities=38%  Similarity=0.676  Sum_probs=87.9

Q ss_pred             ceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCCCCcHHHHHHHhcCCCC
Q 043515           59 TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVG  138 (160)
Q Consensus        59 ~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~~l~p~f~~a~f~L~~G  138 (160)
                      ++++++||+|+.++.|++++++|++|          ++|++||++||+|+++.+||+|||+.+++|+|+|.+++|+|++|
T Consensus         2 ~~~~~~hIl~~~~~~A~~i~~~l~~g----------~~F~~lA~~~S~~~s~~~gGdlg~~~~~~l~~~f~~a~~~l~~G   71 (92)
T 1jns_A            2 KTAAALHILVKEEKLALDLLEQIKNG----------ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL   71 (92)
T ss_dssp             CEEEEEEEEESSHHHHHHHHHHHHHT----------CCHHHHHHHHHCSTTTTTGGGCCEEETTSSCHHHHHHHHHSCTT
T ss_pred             CEEEEEEEEeCCHHHHHHHHHHHHCC----------CCHHHHHHHhCCCcchhcCCeeeEEcCcccCHHHHHHHHhCCCC
Confidence            58999999999999999999999998          89999999999999999999999999999999999999999999


Q ss_pred             CccCcEEeCCeEEEEEEeEEc
Q 043515          139 VTSAPFKSTHGYHIILCEGRK  159 (160)
Q Consensus       139 evS~Piks~~GyhIIkV~~rr  159 (160)
                      +||+||+|++|||||+|++++
T Consensus        72 ~is~pv~t~~G~hIi~v~~~r   92 (92)
T 1jns_A           72 EPTGPLHTQFGYHIIKVLYRN   92 (92)
T ss_dssp             CCEEEEEETTEEEEEEEECCC
T ss_pred             CcCCcEEECCEEEEEEEEeeC
Confidence            999999999999999999875

>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans}

Probab=99.95  E-value=3.3e-28  Score=177.80  Aligned_cols=93  Identities=19%  Similarity=0.409  Sum_probs=87.2

Q ss_pred             CceEEEEEEEecCc--------chHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCCCCcHHHH
Q 043515           58 CTYVKARHILCEKQ--------GKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQ  129 (160)
Q Consensus        58 p~~v~v~hIlv~~~--------~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~~l~p~f~  129 (160)
                      +++|+++||||+..        ..|++++++|++|          ++|++||++||+|+++.+||+|||+.+++|+|+|.
T Consensus         5 ~~~~~v~hIli~~~~~~~~~a~~~A~~i~~~l~~G----------~~F~~lA~~~S~d~sa~~GGdlG~~~~~~l~~~f~   74 (112)
T 3gpk_A            5 TEEYRIGEIFLAATEENKPQVFANAEKIVEQLKQG----------GSFVAYARQYSEASTAAVGGDLGWIRLAQLPTELA   74 (112)
T ss_dssp             CCEEEEEEEEEECCGGGHHHHHHHHHHHHHHHHTT----------CCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHH
T ss_pred             CcEEEEEEEEEeCChhhHHHHHHHHHHHHHHHHCC----------CCHHHHHHHhCCCcchhcCcccceEcccccCHHHH
Confidence            57999999999865        3578888999988          89999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCccCcEEeCCeEEEEEEeEEcC
Q 043515          130 EVSFNTPVGVTSAPFKSTHGYHIILCEGRKN  160 (160)
Q Consensus       130 ~a~f~L~~GevS~Piks~~GyhIIkV~~rr~  160 (160)
                      +++|+|++|+||+||+|++|||||+|+++++
T Consensus        75 ~a~~~l~~GeiS~pv~t~~G~hIikv~~~~~  105 (112)
T 3gpk_A           75 TTAASMGPGQLAGPVEIRGGFSILYLIDKRE  105 (112)
T ss_dssp             HHHHHCCTTCEEEEEEETTEEEEEEEEEEEC
T ss_pred             HHHHhCCCCCccceEEECCEEEEEEEEeEec
Confidence            9999999999999999999999999999975

>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp}

Probab=99.95  E-value=4.8e-28  Score=175.86  Aligned_cols=95  Identities=34%  Similarity=0.531  Sum_probs=86.5

Q ss_pred             CCCceEEEEEEEecCc---------chHHHHHHHHhcCCccCCCCCChh-cHHHHHHHhCCCC-CCCCCCccccccCCCC
Q 043515           56 GTCTYVKARHILCEKQ---------GKINEAYKKLQDGWLSNGDKVPQA-EFSKIAAEYSECP-SGKKGGDLGWFPRGKM  124 (160)
Q Consensus        56 ~~p~~v~v~hIlv~~~---------~~A~~a~~kl~~G~l~~~~~~~~~-~F~~lAk~yS~d~-sa~~GGdlG~~~~~~l  124 (160)
                      ..+++|+++||||...         ..+++++++|++|          . +|++||++||+|+ ++.+||+|||+.+++|
T Consensus         4 ~~~~~v~~~hIli~~~~~~~~~~a~~~a~~i~~~l~~G----------~~~F~~lA~~~S~d~~s~~~GG~lG~~~~~~l   73 (110)
T 4g2p_A            4 ISVTEVHARHILLKPSPIMNDQQARLKLEEIAADIKSG----------KTTFAAAAKEYSQDPGSANQGGDLGWATPDIF   73 (110)
T ss_dssp             CCCEEEEEEEEEECCCSSSCHHHHHHHHHHHHHHHHTT----------SSCHHHHHHHHCCCTTTGGGTTEEEEECGGGS
T ss_pred             ccccEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHcC----------cccHHHHHHHhCCCccccccccccCeeccccc
Confidence            3568999999999753         2456788888888          6 9999999999998 8899999999999999


Q ss_pred             cHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeEEcC
Q 043515          125 AGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN  160 (160)
Q Consensus       125 ~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr~  160 (160)
                      +|+|.+++|+|++|+||+||+|++|||||+|+++|+
T Consensus        74 ~~~f~~a~~~l~~Geis~pv~t~~G~hIikv~~~r~  109 (110)
T 4g2p_A           74 DPAFRDALTKLHKGQISAPVHSSFGWHLIELLDTRK  109 (110)
T ss_dssp             CHHHHHHHHTCCTTCBCCCEEETTEEEEEEEEEEEE
T ss_pred             CHHHHHHHHcCCCCCcCccEEECCEEEEEEEEEEec
Confidence            999999999999999999999999999999999974

>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} SCOP: d.26.1.1 PDB: 3ui5_A 3ui6_A 1fjd_A 1eq3_A

Probab=99.95  E-value=8.4e-28  Score=172.29  Aligned_cols=90  Identities=57%  Similarity=1.014  Sum_probs=86.6

Q ss_pred             ceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCCCCcHHHHHHHhcCCCC
Q 043515           59 TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVG  138 (160)
Q Consensus        59 ~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~~l~p~f~~a~f~L~~G  138 (160)
                      ++|+++||+|++++.|++++++|++|          ++|++||++||+|+ +.+||+|||+.+++|+|+|.+++|+|++|
T Consensus         6 ~~v~~~~Ilv~~~~~A~~i~~~l~~G----------~~F~~lA~~~S~d~-a~~GGdlG~~~~~~l~~~f~~a~~~l~~G   74 (101)
T 3ui4_A            6 NAVKVRHILCEKHGKIMEAMEKLKSG----------MRFNEVAAQYSEDK-ARQGGDLGWMTRGSMVGPFQEAAFALPVS   74 (101)
T ss_dssp             CEEEEEEEEESSHHHHHHHHHHHHTT----------CCHHHHHHHHCSSS-GGGTTEEEEEETTSSCHHHHHHHHTSCCC
T ss_pred             cEEEEEEEEECCHHHHHHHHHHHHCC----------CCHHHHHHHhCcCc-hhcCCceeeEcCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999999999999          89999999999995 78899999999999999999999999999


Q ss_pred             CccC------cEEeCCeEEEEEEeEEc
Q 043515          139 VTSA------PFKSTHGYHIILCEGRK  159 (160)
Q Consensus       139 evS~------Piks~~GyhIIkV~~rr  159 (160)
                      +||.      ||+|++|||||+|++|+
T Consensus        75 ~vs~~~~~~~pv~t~~G~hIikv~~rk  101 (101)
T 3ui4_A           75 GMDKPVFTDPPVKTKFGYHIIMVEGRK  101 (101)
T ss_dssp             BTTBCCBCSSCEEETTEEEEEEEEEEC
T ss_pred             CCccCcccCCcEEECCEEEEEEEEeeC
Confidence            9997      99999999999999986

>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum}

Probab=99.95  E-value=1.7e-27  Score=168.99  Aligned_cols=93  Identities=41%  Similarity=0.661  Sum_probs=88.1

Q ss_pred             CCCCceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCC-CCCCCCCccccccCCCCcHHHHHHHh
Q 043515           55 LGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSEC-PSGKKGGDLGWFPRGKMAGPFQEVSF  133 (160)
Q Consensus        55 f~~p~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d-~sa~~GGdlG~~~~~~l~p~f~~a~f  133 (160)
                      ++.|++++++||+++.++.|++++++|++|          ++|++||++||+| +++.+||+|||+.+++|+|+|++++|
T Consensus         4 ~~~~~~~~~~hIl~~~~~~A~~i~~~l~~g----------~~F~~lA~~~S~d~~s~~~GG~lG~~~~~~l~~~f~~a~~   73 (97)
T 2rqs_A            4 GSMADKIKCSHILVKKQGEALAVQERLKAG----------EKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAF   73 (97)
T ss_dssp             CCCCCSEEEEEEEESCHHHHHHHHHHHTTT----------CCHHHHHHHTCCCCGGGGGTTEEEEECTTSSCHHHHHHHT
T ss_pred             ccccceEEEEEEEeCCHHHHHHHHHHHHCC----------CCHHHHHHHhCCCCcchhcCceeeeEcCCCCCHHHHHHHH
Confidence            567899999999999999999999999998          8999999999965 58899999999999999999999999


Q ss_pred             cCCCCCccCcEEeCCeEEEEEEeE
Q 043515          134 NTPVGVTSAPFKSTHGYHIILCEG  157 (160)
Q Consensus       134 ~L~~GevS~Piks~~GyhIIkV~~  157 (160)
                      +|++|+||+||+|++|||||+|++
T Consensus        74 ~l~~G~is~pv~t~~G~hIi~v~d   97 (97)
T 2rqs_A           74 RLQVGEVSEPVKSEFGYHVIKRLG   97 (97)
T ss_dssp             TCTTSCBCCCEECSSCEEEEEECC
T ss_pred             cCCCCCccccEEECCEEEEEEEeC
Confidence            999999999999999999999974

>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A

Probab=99.95  E-value=1.5e-27  Score=176.97  Aligned_cols=98  Identities=35%  Similarity=0.652  Sum_probs=80.9

Q ss_pred             CccCCCCCceEEEEEEEecCc-----------------chHHHH----HHHHhcCCccCCCCCChhcHHHHHHHhCCCCC
Q 043515           51 SADGLGTCTYVKARHILCEKQ-----------------GKINEA----YKKLQDGWLSNGDKVPQAEFSKIAAEYSECPS  109 (160)
Q Consensus        51 n~~~f~~p~~v~v~hIlv~~~-----------------~~A~~a----~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~s  109 (160)
                      +...|..|++|+++||||+..                 +.|+++    +++|+.|         +.+|++||++||+|++
T Consensus         5 ~~~~~~~~~~v~~~HILi~~~~~~~p~~~~~~~~~~~~~~A~~~~~~i~~~l~~G---------~~~F~~lA~~~S~~~s   75 (123)
T 3i6c_A            5 GKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSG---------EEDFESLASQFSDCSS   75 (123)
T ss_dssp             ------CCSEEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHHHT---------SSCHHHHHHHHCSSGG
T ss_pred             CccccCCCcEEEEEEEEEecCCccCccccchhhhhhHHHHHHHHHHHHHHHHHcC---------cccHHHHHHHhCCCch
Confidence            445899999999999999842                 234433    4466666         3699999999999989


Q ss_pred             CCCCCccccccCCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeE
Q 043515          110 GKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEG  157 (160)
Q Consensus       110 a~~GGdlG~~~~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~  157 (160)
                      +.+||+|||+.+++|+|+|.+++|+|++|+||+||+|++|||||+|++
T Consensus        76 a~~GGdLG~~~~~~l~~~f~~a~f~l~~GeiS~pv~t~~G~hIi~v~E  123 (123)
T 3i6c_A           76 AKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE  123 (123)
T ss_dssp             GGGTTEEEEEETTTSCHHHHHHHHHSCTTCBCSCEEETTEEEEEEECC
T ss_pred             hhhCCceeeEcCCCCCHHHHHHHHhCCCCCccccEEECCEEEEEEEeC
Confidence            999999999999999999999999999999999999999999999975

>2lj4_A Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT; tbpin1; NMR {Trypanosoma brucei}

Probab=99.94  E-value=1.8e-27  Score=174.43  Aligned_cols=91  Identities=29%  Similarity=0.535  Sum_probs=80.9

Q ss_pred             CCceEEEEEEEecCcc-----------------------hHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCC
Q 043515           57 TCTYVKARHILCEKQG-----------------------KINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKG  113 (160)
Q Consensus        57 ~p~~v~v~hIlv~~~~-----------------------~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~G  113 (160)
                      .|++|+++||||...+                       .+++++++|.+|         +.+|++||++||+|+++.+|
T Consensus         1 ~pe~vrasHILi~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~i~~g---------~~~F~~lA~~~Sd~~sa~~G   71 (115)
T 2lj4_A            1 MSEKLRAAHLLVKFSGSRNPVSRRTGDSTADVTYEDAIKELQKWSQRIASG---------EVSFEEAASQRSDCGSYASG   71 (115)
T ss_dssp             CCCEEEEEEEEECCTTSSCCCCTTTSSCCTTSCHHHHHHHHHHHHHHHHHT---------SSCHHHHHHHHCCSGGGGTT
T ss_pred             CCCcEEEEEEEEecCCccChhhhhhccccccccHHHHHHHHHHHHHHHHcC---------chhHHHHHHHhCCCcccccC
Confidence            4789999999995321                       245677777777         36899999999988899999


Q ss_pred             CccccccCCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEe
Q 043515          114 GDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCE  156 (160)
Q Consensus       114 GdlG~~~~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~  156 (160)
                      |+|||+.+++|+|+|.+++|+|++|+||+||+|++|||||+|.
T Consensus        72 GdLG~~~~~~~~~~f~~a~~~l~~GeiS~pv~t~~G~HIIkl~  114 (115)
T 2lj4_A           72 GDLGFFSSGEMMKPFEDAVRALKIGDISPIVQTDSGLHIIKRL  114 (115)
T ss_dssp             SEEEEEETTSSCHHHHHHHTTSCBTCBCCCEECSSSEEEEEEC
T ss_pred             CccceecCCCCCchHHHHHhcCCCCCCCCcEEeCCeEEEEEEe
Confidence            9999999999999999999999999999999999999999986

>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}

Probab=99.94  E-value=1.4e-27  Score=167.81  Aligned_cols=90  Identities=40%  Similarity=0.693  Sum_probs=86.2

Q ss_pred             CceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCcccccc-CCCCcHHHHHHHhcCC
Q 043515           58 CTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP-RGKMAGPFQEVSFNTP  136 (160)
Q Consensus        58 p~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~-~~~l~p~f~~a~f~L~  136 (160)
                      +++++++||+|+.++.|++++++|++|          .+|++||++||+|+++.+||+|||++ ++.|+|+|.+++|+|+
T Consensus         2 ~~~~~~~hIl~~~~~~A~~i~~~l~~g----------~~F~~lA~~~S~~~s~~~gG~lg~~~~~~~l~~~f~~a~~~l~   71 (93)
T 1zk6_A            2 SGKIRASHILVADKKTAEEVEKKLKKG----------EKFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFSKAAFKLK   71 (93)
T ss_dssp             -CCEEEEEEEESSHHHHHHHHHHHHHT----------CCHHHHHHHHCCSGGGGGTTEEEEECTTTSSCTTHHHHHHHSC
T ss_pred             CCEEEEEEEEeccHHHHHHHHHHHHCC----------CCHHHHHHHhCCCchhhhCCeeeeecccccCCHHHHHHHHcCC
Confidence            368999999999999999999999998          89999999999999889999999999 9999999999999999


Q ss_pred             CCCccCcEEeCCeEEEEEEeE
Q 043515          137 VGVTSAPFKSTHGYHIILCEG  157 (160)
Q Consensus       137 ~GevS~Piks~~GyhIIkV~~  157 (160)
                      +|+||+||+|++|||||+|++
T Consensus        72 ~G~is~pv~t~~G~hIi~v~~   92 (93)
T 1zk6_A           72 TGEVSDPVKTQYGYHIIKKTE   92 (93)
T ss_dssp             TTCBCCCEECSSCEEEEEEEE
T ss_pred             CCCccceEEECCEEEEEEEec
Confidence            999999999999999999986

>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A

Probab=99.94  E-value=3.8e-27  Score=168.36  Aligned_cols=91  Identities=24%  Similarity=0.418  Sum_probs=83.6

Q ss_pred             ceEEEEEEEecCc------------chHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCCCCcH
Q 043515           59 TYVKARHILCEKQ------------GKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAG  126 (160)
Q Consensus        59 ~~v~v~hIlv~~~------------~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~~l~p  126 (160)
                      ++|+++||+|+.+            ..|++++.+|++|          .+|++||++||+|+++.+||+|||+.+++|+|
T Consensus         1 ~~~~~~hIli~~~~~~~~~~~~~a~~~a~~i~~~l~~g----------~~F~~lA~~~S~~~s~~~gG~lg~~~~~~l~~   70 (103)
T 2pv1_A            1 TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNG----------ADFGKLAIAHSADQQALNGGQMGWGRIQELPG   70 (103)
T ss_dssp             CCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHTT----------CCHHHHHHHHCCSTTGGGTTEEEEECGGGSCH
T ss_pred             CcEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC----------CCHHHHHHHhCCCcccccCCccceEchhhcCH
Confidence            3699999999753            2467888888888          89999999999999889999999999999999


Q ss_pred             HHHHHHhcCCCCCccCcEEeCCeEEEEEEeEEc
Q 043515          127 PFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK  159 (160)
Q Consensus       127 ~f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr  159 (160)
                      +|.+++|+|++|+||+||+|++|||||+|++++
T Consensus        71 ~f~~a~~~l~~G~is~pv~t~~G~hii~v~~~r  103 (103)
T 2pv1_A           71 IFAQALSTAKKGDIVGPIRSGVGFHILKVNDLR  103 (103)
T ss_dssp             HHHHHTTTCCTTCEEEEEEETTEEEEEEEEEEC
T ss_pred             HHHHHHHcCCCCCeeccEEECCEEEEEEEEEEC
Confidence            999999999999999999999999999999985

>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli}

Probab=99.93  E-value=7.7e-27  Score=167.42  Aligned_cols=91  Identities=21%  Similarity=0.424  Sum_probs=86.4

Q ss_pred             ceEEEEEEEe--cCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCccccccCCCCcHHHHHHHhcC
Q 043515           59 TYVKARHILC--EKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPRGKMAGPFQEVSFNT  135 (160)
Q Consensus        59 ~~v~v~hIlv--~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~~~~l~p~f~~a~f~L  135 (160)
                      ++++++|||+  +.++.|++++++|++|          ++|++||++||+|+ ++.+||+|||+.+++|+|+|++++|+ 
T Consensus         2 ~~~~~~hIl~~~~~~~~A~~i~~~l~~G----------~~F~~lA~~~S~d~~sa~~GGdlG~~~~~~l~~~f~~a~~~-   70 (102)
T 2kgj_A            2 QPQRTRYSIIQTKTEDEAKAVLDELNKG----------GDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLK-   70 (102)
T ss_dssp             CCCEEEEEEEEESSHHHHHHHHHHHHHT----------SCHHHHHHHTCTTHHHHTTTSEEEEEETTCCCHHHHTTCCC-
T ss_pred             CEEEEEeeecChhhHHHHHHHHHHHHCC----------CCHHHHHHHhCCCchhhhcCCccceecccccCHHHHHHHhc-
Confidence            5799999999  6777899999999998          89999999999999 89999999999999999999999999 


Q ss_pred             CCCCccCcEEeCCeEEEEEEeEEcC
Q 043515          136 PVGVTSAPFKSTHGYHIILCEGRKN  160 (160)
Q Consensus       136 ~~GevS~Piks~~GyhIIkV~~rr~  160 (160)
                      ++|+||+||+|++|||||+|+++++
T Consensus        71 ~~GeiS~pv~t~~G~hIikv~~~~~   95 (102)
T 2kgj_A           71 EKGQLSGVIKSSVGFLIVRLDDIQA   95 (102)
T ss_dssp             STTCEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCCccccEEECCEEEEEEEeeccc
Confidence            9999999999999999999999875

>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus}

Probab=99.93  E-value=4.2e-26  Score=165.08  Aligned_cols=92  Identities=33%  Similarity=0.464  Sum_probs=82.9

Q ss_pred             CCceEEEEEEEecC---------------cchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCcccccc
Q 043515           57 TCTYVKARHILCEK---------------QGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFP  120 (160)
Q Consensus        57 ~p~~v~v~hIlv~~---------------~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~  120 (160)
                      .|++|+++||+|+.               ...|++++++|++|         +.+|++||++||+|+ ++.+||+|||+.
T Consensus         4 ~~~~~~~~hIli~~~~~~~~~~~~~~~~~~~~a~~i~~~l~~g---------~~~F~~lA~~~S~d~~s~~~gG~lG~~~   74 (111)
T 2jzv_A            4 GSDSKKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKD---------PSKFGEIAKKESMDTGSAKKDGELGYVL   74 (111)
T ss_dssp             CCSEEEEEEEEEEBCSCSSCSSSBCHHHHHHHHHHHHHHHHSC---------TTSHHHHHHHHCSCHHHHTTTTEEEEEE
T ss_pred             CCcEEEEEEEEEECCCCCChhhhhhHHHHHHHHHHHHHHHHcC---------cccHHHHHHHHCCCcchhhhCCccceec
Confidence            46899999999972               23467788888876         479999999999998 899999999999


Q ss_pred             CCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeE
Q 043515          121 RGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEG  157 (160)
Q Consensus       121 ~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~  157 (160)
                      ++.|+++|.+++|+|++|+||+||+|++|||||+|++
T Consensus        75 ~~~l~~~f~~a~~~l~~G~is~pv~t~~G~hIi~v~~  111 (111)
T 2jzv_A           75 KGQTDKDFEKALFKLKDGEVSEVVKSSFGYHIIKADK  111 (111)
T ss_dssp             TTSSCHHHHHHHHTCCTTCBCCCEEETTEEEEEEECC
T ss_pred             CCcccHHHHHHHHhCCCCCcCccEEECCEEEEEEEeC
Confidence            9999999999999999999999999999999999974

>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1

Probab=99.92  E-value=1.2e-26  Score=175.16  Aligned_cols=98  Identities=34%  Similarity=0.565  Sum_probs=84.1

Q ss_pred             CCCccCCCCCceEEEEEEEecCc---------------------ch----HHHHHHHHhcCCccCCCCCChh-cHHHHHH
Q 043515           49 GKSADGLGTCTYVKARHILCEKQ---------------------GK----INEAYKKLQDGWLSNGDKVPQA-EFSKIAA  102 (160)
Q Consensus        49 ~~n~~~f~~p~~v~v~hIlv~~~---------------------~~----A~~a~~kl~~G~l~~~~~~~~~-~F~~lAk  102 (160)
                      ..|+++|..+++|+++||||+..                     +.    +++++.+|+.|          . +|++||+
T Consensus        15 ~~~~~~f~~~~~v~~~HILi~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~a~~i~~~l~~G----------~~~F~~lA~   84 (139)
T 1j6y_A           15 VPRGSHMASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSG----------KANFEEVAT   84 (139)
T ss_dssp             -----CCSSCCSCEEECCEECSCTTSSSSSCSCCCSCCCSCCCHHHHHHHHHHHHHHHHSS----------CCCCHHHHH
T ss_pred             HHhHHHcCCCCeEEEEEEEEecCccccccccccccccccchHHHHHHHHHHHHHHHHHHcC----------cccHHHHHH
Confidence            57899999999999999999753                     11    34677778877          5 6999999


Q ss_pred             HhCCCCCCCCCCccccccCCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEe
Q 043515          103 EYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCE  156 (160)
Q Consensus       103 ~yS~d~sa~~GGdlG~~~~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~  156 (160)
                      +||+|+++.+||+|||+.+++|+|+|++++|+|++|+||+||+|++|||||+|+
T Consensus        85 ~~S~~~sa~~GGdLG~~~~~~l~~~f~~a~~~l~~GeiS~pv~t~~G~hIikv~  138 (139)
T 1j6y_A           85 RVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRT  138 (139)
T ss_dssp             HSSCHHHHHTCSEEEECSSSSSCTHHHHHHHHCCSSSCCSCEEETTEEECCCSC
T ss_pred             HhccCchhhcCCeeeeecccccCHHHHHHHHcCCCCCccccEEECCEEEEEEEe
Confidence            999988888999999999999999999999999999999999999999999986

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...

Probab=99.92  E-value=2.3e-25  Score=172.73  Aligned_cols=95  Identities=36%  Similarity=0.670  Sum_probs=80.8

Q ss_pred             CCCCCceEEEEEEEecC-----------------cchHHHHH----HHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCC
Q 043515           54 GLGTCTYVKARHILCEK-----------------QGKINEAY----KKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKK  112 (160)
Q Consensus        54 ~f~~p~~v~v~hIlv~~-----------------~~~A~~a~----~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~  112 (160)
                      .+..+++|+++||||+.                 ++.|++++    ++|++|         +.+|++||++||+|+++.+
T Consensus        51 ~~~~~~~v~~~HILi~~~~~~~p~~~~~~~~~~~~~~A~~~~~~i~~~l~~g---------~~~F~~lA~~~Sd~~sa~~  121 (166)
T 3tc5_A           51 GQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSG---------EEDFESLASQFSDCSSAKA  121 (166)
T ss_dssp             ---CCSCEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHHHT---------SSCHHHHHHHHCSSGGGGG
T ss_pred             ccccccceeEeeeEEecccccCccccchhhhhhHHHHHHHHHHHHHHHHHcC---------ccCHHHHHHHhCcccHHhc
Confidence            46678999999999983                 22344444    466666         3699999999999989999


Q ss_pred             CCccccccCCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeE
Q 043515          113 GGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEG  157 (160)
Q Consensus       113 GGdlG~~~~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~  157 (160)
                      ||||||+.+++|+++|++++|+|++|+||+||+|++|||||+|++
T Consensus       122 GGdLG~~~~~~l~~~f~~a~f~l~~GeiS~pv~t~~G~hIi~v~e  166 (166)
T 3tc5_A          122 RGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE  166 (166)
T ss_dssp             TTEEEEECTTSSCHHHHHHHHHSCTTCBCCCEEETTEEEEEEECC
T ss_pred             CCccceecccccCHHHHHHHHhCCCCCCcccEEECCEEEEEEEeC
Confidence            999999999999999999999999999999999999999999974

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}

Probab=99.92  E-value=4.6e-25  Score=171.99  Aligned_cols=98  Identities=31%  Similarity=0.579  Sum_probs=85.6

Q ss_pred             CCccCC-----CCCceEEEEEEEecCc------------------chH----HHHHHHHhcCCccCCCCCChh-cHHHHH
Q 043515           50 KSADGL-----GTCTYVKARHILCEKQ------------------GKI----NEAYKKLQDGWLSNGDKVPQA-EFSKIA  101 (160)
Q Consensus        50 ~n~~~f-----~~p~~v~v~hIlv~~~------------------~~A----~~a~~kl~~G~l~~~~~~~~~-~F~~lA  101 (160)
                      .|++.|     ..+++++++||||+..                  +.|    ++++++|+.|          . +|++||
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~hIlv~~~~~~~p~~~~~~~~~~~~~~~A~~~~~~i~~~l~~G----------~~~F~~lA  121 (177)
T 1yw5_A           52 KFKNNGYKPLVNEDGQVRVSHLLIKNNQSRKPKSWKSPDGISRTRDESIQILKKHLERILSG----------EVKLSELA  121 (177)
T ss_dssp             HHHHTTSCCCCCTTSCEEEEEEEECCTTSSSCCBTTBTTCCCCCHHHHHHHHHHHHHHHHHT----------SSCHHHHH
T ss_pred             HhHhhhcccccCCcceEEEEEEEEecCCccCcccccccccchhHHHHHHHHHHHHHHHHHcC----------chhHHHHH
Confidence            466677     6889999999999852                  222    3446677777          5 799999


Q ss_pred             HHhCCCCCCCCCCccccccCCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeE
Q 043515          102 AEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEG  157 (160)
Q Consensus       102 k~yS~d~sa~~GGdlG~~~~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~  157 (160)
                      ++||+|+++.+||+|||+.+++|+++|++++|+|++|+||+||+|++|||||+|++
T Consensus       122 ~~~S~~~sa~~GGdLG~~~~~~l~~~f~~a~f~L~~GeiS~pv~t~~G~hIikv~~  177 (177)
T 1yw5_A          122 NTESDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSNIIETNSGVHILQRTG  177 (177)
T ss_dssp             HHHCCSGGGGGTTEEEEECTTSSCHHHHHHHHTSCTTCBCCCEEETTEEEEEEECC
T ss_pred             HHhCCCcchhcCCccceecccccCHHHHHHHHcCCCCCcCCeEEECCEEEEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999974

>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}

Probab=99.90  E-value=4e-24  Score=172.95  Aligned_cols=105  Identities=31%  Similarity=0.578  Sum_probs=93.9

Q ss_pred             CCCccCCCCCceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCCh---hcHHHHHHHhCCCCCC-CCCCccccccCCCC
Q 043515           49 GKSADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQ---AEFSKIAAEYSECPSG-KKGGDLGWFPRGKM  124 (160)
Q Consensus        49 ~~n~~~f~~p~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~---~~F~~lAk~yS~d~sa-~~GGdlG~~~~~~l  124 (160)
                      ..|++.|..|++++++||+|+.++.|++++.+|+.+       ..+   .+|++||++||.|+++ .+||++||++.++|
T Consensus       101 ~~~~~~f~~~~~~~~~~I~~~~~~~A~~~~~~l~~~-------~g~~~~~~F~~lA~~~S~~~~~~~~gGdlg~~~~~~l  173 (252)
T 3rfw_A          101 DQNKDKYVKPARVQAKHILVATEKEAKDIINELKGL-------KGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTM  173 (252)
T ss_dssp             HHHGGGSEECCEEEEEEEEESSHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHCCCTTTGGGTTEEEEECSSSS
T ss_pred             HHhHHhccccceEEEEEEEeCCHHHHHHHHHHHHhh-------cCCCccccHHHHHHHhCCCCchhhcCCcccccccccc
Confidence            357889999999999999999999999999999842       002   4999999999999944 56999999999999


Q ss_pred             cHHHHHHHhcCCCCCcc-CcEEeCCeEEEEEEeEEcC
Q 043515          125 AGPFQEVSFNTPVGVTS-APFKSTHGYHIILCEGRKN  160 (160)
Q Consensus       125 ~p~f~~a~f~L~~GevS-~Piks~~GyhIIkV~~rr~  160 (160)
                      +|+|.+++|.|++|+|| .||+|++|||||+|+++++
T Consensus       174 ~~~f~~a~~~l~~G~is~~pv~t~~G~hii~v~~~~~  210 (252)
T 3rfw_A          174 VKPFTDAAFALKNGTITTTPVKTNFGYHVILKENSQA  210 (252)
T ss_dssp             CHHHHHHHHHSCTTEECSSCEEETTEEEEEEEEEEEC
T ss_pred             cHHHHHHHHcCCCCCccCceEEECCEEEEEEEEEecC
Confidence            99999999999999999 5999999999999999874

>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}

Probab=99.84  E-value=5.8e-22  Score=166.34  Aligned_cols=98  Identities=21%  Similarity=0.300  Sum_probs=86.8

Q ss_pred             CCccCCCCCceEEEEEEEe-----------cCcchHHHHHHH-HhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCcc
Q 043515           50 KSADGLGTCTYVKARHILC-----------EKQGKINEAYKK-LQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDL  116 (160)
Q Consensus        50 ~n~~~f~~p~~v~v~hIlv-----------~~~~~A~~a~~k-l~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdl  116 (160)
                      .|++.|  +..++++||+|           .....|++++.+ |.+|          .+|++||++||+|+ ++.+||+|
T Consensus       151 ~~~~~~--~~~~~~~~Ili~~~~~~~~~~~~~~~~a~~i~~~~l~~g----------~~F~~lA~~~S~d~~s~~~gG~l  218 (325)
T 3nrk_A          151 QNKDKV--GFEIRYRIISIAPENDSIQEENRLYKEVSEIRKSILADP----------SSFALIAGSPRNDPALRARRGMV  218 (325)
T ss_dssp             HCHHHH--CEEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHCT----------THHHHHHHSTTSCHHHHHTTTEE
T ss_pred             Hhhhhc--CcceEEEEEEEecCCCCccchHHHHHHHHHHHHHHHhCC----------CCHHHHHHHhCCCccccccCCcc
Confidence            345555  46789999999           445567888888 8888          89999999999998 56899999


Q ss_pred             ccccCCCCc---HHHHHHHhcCCCCCccCcEEeCC-eEEEEEEeEEc
Q 043515          117 GWFPRGKMA---GPFQEVSFNTPVGVTSAPFKSTH-GYHIILCEGRK  159 (160)
Q Consensus       117 G~~~~~~l~---p~f~~a~f~L~~GevS~Piks~~-GyhIIkV~~rr  159 (160)
                      ||++.++|+   |+|.+++|+|++|+||+||+|++ |||||+|++++
T Consensus       219 g~~~~~~l~~~~~~~~~a~~~l~~Geis~pv~t~~~G~hIikv~~~~  265 (325)
T 3nrk_A          219 EWISSFDLYKYSKITATIAAPLPNGGVSEVFRDERKRYCILKIEGKR  265 (325)
T ss_dssp             EEEEHHHHHHHCHHHHHHHTTCCTTCBCCCEECTTSCEEEEEEEEEE
T ss_pred             cccccccccccCHHHHHHHHcCCCCCCCceEEeCCCeEEEEEEeccC
Confidence            999999999   99999999999999999999999 99999999985

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A

Probab=99.83  E-value=6.2e-21  Score=162.57  Aligned_cols=102  Identities=22%  Similarity=0.371  Sum_probs=86.6

Q ss_pred             CCCccCCCCCceEEEEEEEecCc------------chHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCcc
Q 043515           49 GKSADGLGTCTYVKARHILCEKQ------------GKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDL  116 (160)
Q Consensus        49 ~~n~~~f~~p~~v~v~hIlv~~~------------~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdl  116 (160)
                      ..|++.|..|++++++||+|+..            ..|++++.+|+.|          .+|+++|++||+|+++.+||++
T Consensus       142 ~~~~~~~~~~~~~~~~~i~i~~~~~~s~~~~~~~~~~a~~~~~~l~~g----------~~F~~lA~~~S~~~~~~~gG~l  211 (408)
T 1m5y_A          142 QQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNG----------ADFGKLAIAHSADQQALNGGQM  211 (408)
T ss_dssp             HCC-------CCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHTT----------CCHHHHHHHHCCSTTGGGTTEE
T ss_pred             HhhhhhcCCcccEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHCC----------CCHHHHHHHcCCCcccccCCcc
Confidence            35777899999999999999753            2467788888888          8999999999999998999999


Q ss_pred             ccccCCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeEEcC
Q 043515          117 GWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN  160 (160)
Q Consensus       117 G~~~~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr~  160 (160)
                      ||+..+.|+|+|.+++|.|++|+||+||+|++|||||+|.++++
T Consensus       212 g~~~~~~l~~~~~~~~~~l~~G~vs~pv~~~~g~~iikv~~~~~  255 (408)
T 1m5y_A          212 GWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRG  255 (408)
T ss_dssp             EEECGGGSCHHHHTGGGTCCTTCEEEEEEETTEEEEEEEEEECC
T ss_pred             cccchhhccHHHHHHHHhCCCCCccCeeecCCeEEEEEEEEecC
Confidence            99999999999999999999999999999999999999998763

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A

Probab=99.78  E-value=5.1e-19  Score=150.67  Aligned_cols=96  Identities=31%  Similarity=0.495  Sum_probs=85.9

Q ss_pred             CCCCCceEEEEEEEecCc---------chHHHHHHHHhcCCccCCCCCChh-cHHHHHHHhCCCC-CCCCCCccccccCC
Q 043515           54 GLGTCTYVKARHILCEKQ---------GKINEAYKKLQDGWLSNGDKVPQA-EFSKIAAEYSECP-SGKKGGDLGWFPRG  122 (160)
Q Consensus        54 ~f~~p~~v~v~hIlv~~~---------~~A~~a~~kl~~G~l~~~~~~~~~-~F~~lAk~yS~d~-sa~~GGdlG~~~~~  122 (160)
                      .+..+++++++|||+...         ..+++++.+|.+|          . +|+++|++||.|+ ++.+||++||++++
T Consensus       258 ~~~~~~~~~~~~Il~~~~~~~~~~~a~~~a~~~~~~l~~g----------~~~f~~~A~~~s~~~~s~~~gg~lg~~~~~  327 (408)
T 1m5y_A          258 KNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSG----------KTTFAAAAKEFSQDPGSANQGGDLGWATPD  327 (408)
T ss_dssp             CCCCCEEEEEEEEEECCCSSSCHHHHHHHHHHHHHHHHTT----------SSCHHHHHHHHCCCTTTGGGTTEEEEECGG
T ss_pred             CcccccchhhheeeecCCCCcCHHHHHHHHHHHHHHHHcC----------cccHHHHHHHhCCCcchhhcCCcCcccCcc
Confidence            455678999999999753         2356777888887          6 9999999999997 88999999999999


Q ss_pred             CCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeEEc
Q 043515          123 KMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK  159 (160)
Q Consensus       123 ~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr  159 (160)
                      .|+|+|.+++|+|++|++|+||++++|||||+|++++
T Consensus       328 ~~~~~~~~a~f~l~~G~~s~~v~~~~g~~ii~v~~~~  364 (408)
T 1m5y_A          328 IFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTR  364 (408)
T ss_dssp             GSCHHHHHHHHTCCTTCBCCCEECSSCEEEEEEEEEE
T ss_pred             cchHHHHHHHHcCCCCCccCcEeeCCeEEEEEEeeec
Confidence            9999999999999999999999999999999999986

>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}

Probab=99.67  E-value=3.9e-17  Score=131.82  Aligned_cols=85  Identities=12%  Similarity=0.174  Sum_probs=75.5

Q ss_pred             CCCccCCCCCceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCCCCcHHH
Q 043515           49 GKSADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPF  128 (160)
Q Consensus        49 ~~n~~~f~~p~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~~l~p~f  128 (160)
                      .+|++.|..|++|+++||++.++    +++++|+.|          .+|+             -+|++||++.++|+|+|
T Consensus       124 ~~~~~~f~~~~~v~~~~i~~~~~----~~~~~l~~g----------~~f~-------------l~g~lg~~~~~~l~~~~  176 (252)
T 3rgc_A          124 EQNKDKFTFYTQINANIYLSNNP----QTLENIKNT----------KKTI-------------LKPQNASLNTSNADPRL  176 (252)
T ss_dssp             HTCGGGCCEESEEEEEEEECSCH----HHHHHHHHH----------CCCC-------------SCCEEEEEETTTSCHHH
T ss_pred             HhCHHhcCCCceEEEEEecCCCH----HHHHHHHhC----------CCcc-------------cccccceecHHhcCHHH
Confidence            46889999999999999998653    467788887          6776             26899999999999999


Q ss_pred             HHHHhcCCCCCccCcEEeCCeEEEEEEeEEcC
Q 043515          129 QEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN  160 (160)
Q Consensus       129 ~~a~f~L~~GevS~Piks~~GyhIIkV~~rr~  160 (160)
                      .+++++|++|+||+||+|++|||||+|+++++
T Consensus       177 ~~a~~~l~~G~is~pv~t~~G~hiikv~~~~~  208 (252)
T 3rgc_A          177 LGLLSQIPVGSFSPVLNGKNGYELYEVKSKDG  208 (252)
T ss_dssp             HHHHHHSCTTCBCCCBTTTTCEEEEEEEECSC
T ss_pred             HHHHHcCCCCCcCCcEEeCCeEEEEEEecccC
Confidence            99999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d1eq3a_	96	d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar	4e-22
d1jnsa_	92	d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichi	2e-20
d1j6ya_	120	d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Tha	1e-17
d1m5ya3	108	d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase	5e-17
d1pina2	119	d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain	1e-14
d2pv2a1	103	d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase	1e-11

>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin
species: Human (Homo sapiens), hpar14 [TaxId: 9606]

 Score = 82.8 bits (204), Expect = 4e-22
 Identities = 49/105 (46%), Positives = 60/105 (57%), Gaps = 17/105 (16%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
           VK RHILCEK GKI EA +KL+ G            F+++AA+YSE  + + G   GW  
Sbjct: 3   VKVRHILCEKHGKIMEAMEKLKSG----------MRFNEVAAQYSEDKARQGGDL-GWMT 51

Query: 121 RGKMAGPFQEVSFNTPVG------VTSAPFKSTHGYHIILCEGRK 159
           RG M GPFQE +F  PV        T  P K+  GYHII+ EGRK
Sbjct: 52  RGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 96

>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]} Length = 92

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin 10 (rotamase C)
species: Escherichia coli [TaxId: 562]

 Score = 78.2 bits (192), Expect = 2e-20
 Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 10/98 (10%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFP 120
             A HIL +++    +  +++++G          A+F K+A ++S CPSGK+GGDLG F 
Sbjct: 4   AAALHILVKEEKLALDLLEQIKNG----------ADFGKLAKKHSICPSGKRGGDLGEFR 53

Query: 121 RGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGR 158
           +G+M   F +V F+ PV   + P  +  GYHII    R
Sbjct: 54  QGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYR 91

>d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 71.8 bits (175), Expect = 1e-17
 Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 16/109 (14%)

Query: 61  VKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAE----------------FSKIAAEY 104
           VKA HIL + QG   +A  K  +G +        A                 F ++A   
Sbjct: 8   VKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRV 67

Query: 105 SECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHII 153
           S+C S K+GGDLG F RG+M  PF+E ++   VG  S    +  G HII
Sbjct: 68  SDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHII 116

>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

 Score = 70.2 bits (171), Expect = 5e-17
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 1/103 (0%)

Query: 59  TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGK-KGGDLG 117
           T V ARHIL +    + +   +++   ++   K  +  F+  A E+S+ P    +GGDLG
Sbjct: 5   TEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLG 64

Query: 118 WFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN 160
           W         F++       G  SAP  S+ G+H+I     +N
Sbjct: 65  WATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRN 107

>d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (155), Expect = 1e-14
 Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 30/126 (23%)

Query: 52  ADGLGTCTYVKARHILC---------------------EKQGKINEAYKKLQDGWLSNGD 90
            +G G    V+  H+L                      E    IN   +K++ G      
Sbjct: 2   KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSG------ 55

Query: 91  KVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGY 150
              + +F  +A+++S+C S K  GDLG F RG+M  PF++ SF    G  S P  +  G 
Sbjct: 56  ---EEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGI 112

Query: 151 HIILCE 156
           HIIL  
Sbjct: 113 HIILRT 118

>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]} Length = 103

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

 Score = 56.0 bits (134), Expect = 1e-11
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 22/113 (19%)

Query: 59  TYVKARHIL------------CEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSE 106
           T +   HIL             E + +      + ++G          A+F K+A  +S 
Sbjct: 1   TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNG----------ADFGKLAIAHSA 50

Query: 107 CPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK 159
                 GG +GW    ++ G F +       G    P +S  G+HI+     +
Sbjct: 51  DQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLR 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d1jnsa_	92	Parvulin 10 (rotamase C) {Escherichia coli [TaxId:	99.96
d1eq3a_	96	Parvulin {Human (Homo sapiens), hpar14 [TaxId: 960	99.95
d1pina2	119	Mitotic rotamase PIN1, domain 2 {Human (Homo sapie	99.94
d1m5ya3	108	Porin chaperone SurA, PPIase domains {Escherichia	99.93
d2pv2a1	103	Porin chaperone SurA, PPIase domains {Escherichia	99.93
d1j6ya_	120	Mitotic rotamase PIN1, domain 2 {Thale cress (Arab	99.92

>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin 10 (rotamase C)
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=3.9e-29  Score=174.80  Aligned_cols=90  Identities=39%  Similarity=0.681  Sum_probs=87.2

Q ss_pred             ceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCCCCcHHHHHHHhcCCCC
Q 043515           59 TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVG  138 (160)
Q Consensus        59 ~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~~l~p~f~~a~f~L~~G  138 (160)
                      .+++++|||++.++.|.+++++|++|          .+|++||++||+|+++.+||+|||+++++|+|+|.+++|+|++|
T Consensus         2 ~~~~a~HIlv~~~~~A~~i~~~l~~g----------~~F~~lA~~~S~d~s~~~gG~lG~~~~~~l~~~f~~~~~~l~~G   71 (92)
T d1jnsa_           2 KTAAALHILVKEEKLALDLLEQIKNG----------ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVL   71 (92)
T ss_dssp             CEEEEEEEEESSHHHHHHHHHHHHHT----------CCHHHHHHHHHCSTTTTTGGGCCEEETTSSCHHHHHHHHHSCTT
T ss_pred             CcceEEEEEeCCHHHHHHHHHHHHCC----------CCHHHHHHHhCCCcccchhhhhceeeHhhhhhHHHHHHHhCCCC
Confidence            57899999999999999999999999          89999999999999888999999999999999999999999999


Q ss_pred             CccCcEEeCCeEEEEEEeEE
Q 043515          139 VTSAPFKSTHGYHIILCEGR  158 (160)
Q Consensus       139 evS~Piks~~GyhIIkV~~r  158 (160)
                      ++|+||+|++|||||+|.+|
T Consensus        72 ~vs~pi~t~~G~HIikv~dr   91 (92)
T d1jnsa_          72 EPTGPLHTQFGYHIIKVLYR   91 (92)
T ss_dssp             CCEEEEEETTEEEEEEEECC
T ss_pred             CcCCCEEeCCeEEEEEEEeC
Confidence            99999999999999999987

>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin
species: Human (Homo sapiens), hpar14 [TaxId: 9606]

Probab=99.95  E-value=4.9e-28  Score=170.74  Aligned_cols=90  Identities=57%  Similarity=1.017  Sum_probs=84.6

Q ss_pred             ceEEEEEEEecCcchHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCCCCcHHHHHHHhcCCCC
Q 043515           59 TYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVSFNTPVG  138 (160)
Q Consensus        59 ~~v~v~hIlv~~~~~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~~l~p~f~~a~f~L~~G  138 (160)
                      +.|+|||||+.+++.|++++++|++|          ++|++||++||+|+ +.++|+|||+.+++|+|+|.+++|+|++|
T Consensus         1 ~~v~vrHIl~~~~~~a~~i~~~i~~g----------~~F~~lA~~~S~d~-~~~~G~lG~~~~~~l~~ef~~a~f~l~~g   69 (96)
T d1eq3a_           1 NAVKVRHILCEKHGKIMEAMEKLKSG----------MRFNEVAAQYSEDK-ARQGGDLGWMTRGSMVGPFQEAAFALPVS   69 (96)
T ss_dssp             CCEEEEEEEECCCSTHHHHHHHHTTT----------TSHHHHHHHHCCCT-TTCCSEEEEESSCCSSSHHHHHHHHCCSC
T ss_pred             CcEEEEEEEECCHHHHHHHHHHHHCC----------CCHHHHHHHhCcCc-cccccccceechHHhhHHHHHHHHhCCCC
Confidence            36999999999999999999999998          89999999999995 56789999999999999999999999999


Q ss_pred             Ccc------CcEEeCCeEEEEEEeEEc
Q 043515          139 VTS------APFKSTHGYHIILCEGRK  159 (160)
Q Consensus       139 evS------~Piks~~GyhIIkV~~rr  159 (160)
                      ++|      +||+|++|||||+|++||
T Consensus        70 ~is~~~~~~~pi~T~~G~HIikv~~kr   96 (96)
T d1eq3a_          70 GMDKPVFTDPPVKTKFGYHIIMVEGRK   96 (96)
T ss_dssp             CSSTTTBCSSCEEETTEEEEEEEEECC
T ss_pred             cCccccccCCCEecCCeEEEEEEeeEC
Confidence            987      499999999999999986

>d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.3e-27  Score=172.65  Aligned_cols=96  Identities=36%  Similarity=0.675  Sum_probs=84.1

Q ss_pred             cCCCCCceEEEEEEEecCcc---------------------hHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCC
Q 043515           53 DGLGTCTYVKARHILCEKQG---------------------KINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGK  111 (160)
Q Consensus        53 ~~f~~p~~v~v~hIlv~~~~---------------------~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~  111 (160)
                      +....|++|++|||||...+                     .+++++.+|.+|         +.+|++||++||+|+++.
T Consensus         3 ~~~~~p~~vr~~HILi~~~~~~~~~~~~~~~i~~~k~ea~~~~~~i~~~i~~g---------~~~F~~lA~~~Sd~~s~~   73 (119)
T d1pina2           3 NGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSG---------EEDFESLASQFSDCSSAK   73 (119)
T ss_dssp             CSCCCCSCEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHHHT---------SSCHHHHHHHHCSSGGGG
T ss_pred             CCCCCCcEEEEEEEEEecCCCcCchhhhhhhhhhhHHHHHHHHHHHHHHHHcC---------hhhHHHHHHHcCCCcccc
Confidence            45677899999999995321                     245566777765         378999999999999999


Q ss_pred             CCCccccccCCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEeE
Q 043515          112 KGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCEG  157 (160)
Q Consensus       112 ~GGdlG~~~~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~~  157 (160)
                      +||+|||+..+.|+|+|.+++|+|++|+||+||+|++|||||+|++
T Consensus        74 ~gG~lg~~~~~~l~~~f~~~~~~l~~GeiS~pi~t~~G~HIikv~d  119 (119)
T d1pina2          74 ARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE  119 (119)
T ss_dssp             GTTEEEEECTTSSCHHHHHHHHHCCTTCBCCCEECSSCEEEEEECC
T ss_pred             ccccccccccchHHHHHHHHHhcCCCCCcCCcEEeCCcEEEEEEeC
Confidence            9999999999999999999999999999999999999999999975

>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.2e-26  Score=165.99  Aligned_cols=94  Identities=33%  Similarity=0.559  Sum_probs=82.1

Q ss_pred             CceEEEEEEEecCcc---------hHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCC-CCCCCCccccccCCCCcHH
Q 043515           58 CTYVKARHILCEKQG---------KINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPRGKMAGP  127 (160)
Q Consensus        58 p~~v~v~hIlv~~~~---------~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~-sa~~GGdlG~~~~~~l~p~  127 (160)
                      .+++++|||||+...         .+++++.+|.++         +.+|++||++||+|+ ++.+||+|||+..+.|+++
T Consensus         4 ~tev~vrHILi~~~~~~~~~~a~~~~~~i~~~l~~~---------~~~F~~lA~~~S~d~~~~~~gG~lgw~~~~~l~~~   74 (108)
T d1m5ya3           4 VTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSG---------KTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPA   74 (108)
T ss_dssp             CEEEEEEEEEECCCSSSCHHHHHHHHHHHHHHHHTT---------SSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSCHH
T ss_pred             ccEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcC---------cccHHHHHHHhCcCCccccccccccccccccccHH
Confidence            478999999997543         234555566654         479999999999998 6789999999999999999


Q ss_pred             HHHHHhcCCCCCccCcEEeCCeEEEEEEeEEcC
Q 043515          128 FQEVSFNTPVGVTSAPFKSTHGYHIILCEGRKN  160 (160)
Q Consensus       128 f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr~  160 (160)
                      |.+++++|++|++|+||+|++|||||+|+++|+
T Consensus        75 ~~~~~~~l~~GeiS~pi~t~~G~hIikl~~~r~  107 (108)
T d1m5ya3          75 FRDALTRLNKGQMSAPVHSSFGWHLIELLDTRN  107 (108)
T ss_dssp             HHHHHHTCCTTCBCCCEECSSCEEEEEEEEEEE
T ss_pred             HHHHHHhCCCCCCCccEEeCCEEEEEEEEEEec
Confidence            999999999999999999999999999999984

>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=6.3e-26  Score=160.59  Aligned_cols=91  Identities=24%  Similarity=0.413  Sum_probs=82.8

Q ss_pred             ceEEEEEEEecCcc------------hHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCCCCCCCccccccCCCCcH
Q 043515           59 TYVKARHILCEKQG------------KINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAG  126 (160)
Q Consensus        59 ~~v~v~hIlv~~~~------------~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~sa~~GGdlG~~~~~~l~p  126 (160)
                      ++|+++||+|+..+            .|++++.+|+.|          .+|+++|++||+|+++.+||+|||+..++|++
T Consensus         1 te~~~~hIli~~~~~~~~~~~~~~~~~a~~~~~~l~~g----------~~F~~la~~~S~~~~~~~gG~lg~~~~~~l~~   70 (103)
T d2pv2a1           1 TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNG----------ADFGKLAIAHSADQQALNGGQMGWGRIQELPG   70 (103)
T ss_dssp             CEEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHTT----------CCHHHHHHHHCCSTTGGGTTEEEEEEGGGSBH
T ss_pred             CceEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHcC----------CCHHHHhcccccccccccccccccccccccch
Confidence            47999999996432            355677788887          89999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccCcEEeCCeEEEEEEeEEc
Q 043515          127 PFQEVSFNTPVGVTSAPFKSTHGYHIILCEGRK  159 (160)
Q Consensus       127 ~f~~a~f~L~~GevS~Piks~~GyhIIkV~~rr  159 (160)
                      +|.+++++|++|++|+||+|++|||||+|+++|
T Consensus        71 ~~~~~i~~l~~G~is~pi~t~~G~hIikl~~~R  103 (103)
T d2pv2a1          71 IFAQALSTAKKGDIVGPIRSGVGFHILKVNDLR  103 (103)
T ss_dssp             HHHHHHHTCCTTCEEEEEEETTEEEEEEEEEEC
T ss_pred             hhhhhhhhcCCCCCCCcEEECCEEEEEEEeeEC
Confidence            999999999999999999999999999999986

>d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=9.1e-27  Score=169.72  Aligned_cols=93  Identities=38%  Similarity=0.660  Sum_probs=80.5

Q ss_pred             CCCCceEEEEEEEecCcc-------------------------hHHHHHHHHhcCCccCCCCCChhcHHHHHHHhCCCCC
Q 043515           55 LGTCTYVKARHILCEKQG-------------------------KINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPS  109 (160)
Q Consensus        55 f~~p~~v~v~hIlv~~~~-------------------------~A~~a~~kl~~G~l~~~~~~~~~~F~~lAk~yS~d~s  109 (160)
                      |.+.++|+++||||+..+                         .+++++.+|.+|         +.+|++||++||+|++
T Consensus         2 ~~s~e~vr~sHILik~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~i~~g---------~~~F~~lA~~~Sd~~s   72 (120)
T d1j6ya_           2 MASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSG---------KANFEEVATRVSDCSS   72 (120)
T ss_dssp             CSSCCSCEEECCEECSCTTSSSSSCSCCCSCCCSCCCHHHHHHHHHHHHHHHHSS---------CCCCHHHHHHSSCHHH
T ss_pred             CCCcceEEEEEEEEccCcccchhhhccccccccccccHHHHHHHHHHHHHHHHcC---------cccHHHHHHHhCCCcc
Confidence            567899999999996431                         234455556555         3689999999998888


Q ss_pred             CCCCCccccccCCCCcHHHHHHHhcCCCCCccCcEEeCCeEEEEEEe
Q 043515          110 GKKGGDLGWFPRGKMAGPFQEVSFNTPVGVTSAPFKSTHGYHIILCE  156 (160)
Q Consensus       110 a~~GGdlG~~~~~~l~p~f~~a~f~L~~GevS~Piks~~GyhIIkV~  156 (160)
                      +.+||+|||+.+++|+|+|.+++|.|++|+||+||+|++|||||+|+
T Consensus        73 ~~~GG~lGw~~~~~l~~~f~~~~~~l~~G~is~pi~t~~G~HIikvt  119 (120)
T d1j6ya_          73 AKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRT  119 (120)
T ss_dssp             HHTCSEEEECSSSSSCTHHHHHHHHCCSSSCCSCEEETTEEECCCSC
T ss_pred             cccccccccchhhhcChHHHHHHHcCCCCCcCCCEEeCCeeEEEEEe
Confidence            89999999999999999999999999999999999999999999986