Citrus Sinensis ID: 043518

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
QKFYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLGPQVSYRTLFFFEYLGPLILYPIFYYFPVYQFFGYKGERVIHPVQTYALYYWCFHYFKRIMETFFVHRFSHATSPISNVFRNCAYYWSFGSFIAYYVNHPLYTPVSDLQMKIGFAFGIICQIANFYCHILLKNLRSADGSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAALIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL
ccccccEEEEEEccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
ccccccccEEEEEccccccccccEccccHHHHHccccccccEEEEEEcccccccEEEEEHHHHcccEEEEHHHHccccHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEcccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEccc
qkfypsrqrltlplppgskqrATALDYKKSLkeysdgnsgnlTVVFKdlgpqvsyRTLFFFeylgplilypifyyfpvyqffgykgervihpVQTYALYYWCFHYFKRIMETFFVHRfshatspisnvfrncaYYWSFGSFIAYyvnhplytpvsdlQMKIGFAFGIICQIANFYCHILLKnlrsadgsggyqiprgfLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAALIMTNWALAKHRRLKKlfdgkdgrpkyprrwvilppfl
qkfypsrqrltlplppgskqrATALDYKKSLKeysdgnsgnLTVVFKDLGPQVSYRTLFFFEYLGPLILYPIFYYFPVYQFFGYKGERVIHPVQTYALYYWCFHYFKRIMETFFVHRFSHATSPISNVFRNCAYYWSFGSFIAYYVNHPLYTPVSDLQMKIGFAFGIICQIANFYCHILLKNLRSADGSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAALIMTNWALAKHRRLkklfdgkdgrpkyprrwvilppfl
QKFYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLGPQVSYRTLFFFEYLGPLILYPIFYYFPVYQFFGYKGERVIHPVQTYALYYWCFHYFKRIMETFFVHRFSHATSPISNVFRNCAYYWSFGSFIAYYVNHPLYTPVSDLQMKIGFAFGIICQIANFYCHILLKNLRSADGSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAALIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL
***************************************GNLTVVFKDLGPQVSYRTLFFFEYLGPLILYPIFYYFPVYQFFGYKGERVIHPVQTYALYYWCFHYFKRIMETFFVHRFSHATSPISNVFRNCAYYWSFGSFIAYYVNHPLYTPVSDLQMKIGFAFGIICQIANFYCHILLKNLRSADGSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAALIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVIL****
*KFYPSRQRLTLP*************YKKSLKEYSDGNSGNLTVVFKDLGPQVSYRTLFFFEYLGPLILYPIFYYFPVYQFFGYKGERVIHPVQTYALYYWCFHYFKRIMETFFVHRFSHATSPISNVFRNCAYYWSFGSFIAYYVNHPLYTPVSDLQMKIGFAFGIICQIANFYCHILLKN********GYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAALIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL
QKFYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLGPQVSYRTLFFFEYLGPLILYPIFYYFPVYQFFGYKGERVIHPVQTYALYYWCFHYFKRIMETFFVHRFSHATSPISNVFRNCAYYWSFGSFIAYYVNHPLYTPVSDLQMKIGFAFGIICQIANFYCHILLKNLRSADGSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAALIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL
*KFYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLGPQVSYRTLFFFEYLGPLILYPIFYYFPVYQFFGYKGERVIHPVQTYALYYWCFHYFKRIMETFFVHRFSHATSPISNVFRNCAYYWSFGSFIAYYVNHPLYTPVSDLQMKIGFAFGIICQIANFYCHILLKNLRSADGSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAALIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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QKFYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLGPQVSYRTLFFFEYLGPLILYPIFYYFPVYQFFGYKGERVIHPVQTYALYYWCFHYFKRIMETFFVHRFSHATSPISNVFRNCAYYWSFGSFIAYYVNHPLYTPVSDLQMKIGFAFGIICQIANFYCHILLKNLRSADGSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAALIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query273 2.2.26 [Sep-21-2011]
Q9M2U2310 Very-long-chain enoyl-CoA yes no 1.0 0.880 0.835 1e-139
Q55C17300 Very-long-chain enoyl-CoA yes no 0.941 0.856 0.434 1e-54
Q9N5Y2308 Probable very-long-chain yes no 0.952 0.844 0.386 2e-47
Q9NZ01308 Very-long-chain enoyl-CoA yes no 0.930 0.824 0.405 2e-46
Q64232308 Very-long-chain enoyl-CoA yes no 0.934 0.827 0.406 2e-46
Q9CY27308 Very-long-chain enoyl-CoA yes no 0.934 0.827 0.406 4e-46
Q3ZCD7308 Very-long-chain enoyl-CoA yes no 0.934 0.827 0.402 5e-46
Q5HYJ1363 Trans-2,3-enoyl-CoA reduc no no 0.824 0.619 0.355 3e-36
Q8BFZ1361 Trans-2,3-enoyl-CoA reduc no no 0.809 0.612 0.355 8e-35
Q3SZ89363 Trans-2,3-enoyl-CoA reduc no no 0.853 0.641 0.354 9e-35
>sp|Q9M2U2|ECR_ARATH Very-long-chain enoyl-CoA reductase OS=Arabidopsis thaliana GN=ECR PE=2 SV=1 Back     alignment and function desciption
 Score =  494 bits (1273), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 228/273 (83%), Positives = 252/273 (92%)

Query: 1   QKFYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLGPQVSYRTLFF 60
           +KFYPSRQRLTLP+ PGSK +   L+ KKSLKEY DGN+ +LTVVFKDLG QVSYRTLFF
Sbjct: 38  KKFYPSRQRLTLPVTPGSKDKPVVLNSKKSLKEYCDGNNNSLTVVFKDLGAQVSYRTLFF 97

Query: 61  FEYLGPLILYPIFYYFPVYQFFGYKGERVIHPVQTYALYYWCFHYFKRIMETFFVHRFSH 120
           FEYLGPL++YP+FYYFPVY+F GY  + VIHPVQTYA+YYWCFHYFKRI+ETFFVHRFSH
Sbjct: 98  FEYLGPLLIYPVFYYFPVYKFLGYGEDCVIHPVQTYAMYYWCFHYFKRILETFFVHRFSH 157

Query: 121 ATSPISNVFRNCAYYWSFGSFIAYYVNHPLYTPVSDLQMKIGFAFGIICQIANFYCHILL 180
           ATSPI NVFRNCAYYWSFG++IAYYVNHPLYTPVSDLQMKIGF FG++CQ+ANFYCHILL
Sbjct: 158 ATSPIGNVFRNCAYYWSFGAYIAYYVNHPLYTPVSDLQMKIGFGFGLVCQVANFYCHILL 217

Query: 181 KNLRSADGSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAALIMTN 240
           KNLR   G+GGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQT+AGY+FL VAALIMTN
Sbjct: 218 KNLRDPSGAGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTIAGYVFLAVAALIMTN 277

Query: 241 WALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL 273
           WAL KH RL+K+FDGKDG+PKYPRRWVILPPFL
Sbjct: 278 WALGKHSRLRKIFDGKDGKPKYPRRWVILPPFL 310
Enoyl-CoA reductase responsible for the second reduction step in very long-chain fatty acids (VLCFAs) synthesis. Required for the elongation of fatty acids precursors of sphingolipids, storage lipids and cuticular waxes.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 9EC: 3
>sp|Q55C17|TECR_DICDI Very-long-chain enoyl-CoA reductase OS=Dictyostelium discoideum GN=gpsn2 PE=3 SV=1 Back     alignment and function description
>sp|Q9N5Y2|TECR_CAEEL Probable very-long-chain enoyl-CoA reductase art-1 OS=Caenorhabditis elegans GN=art-1 PE=3 SV=1 Back     alignment and function description
>sp|Q9NZ01|TECR_HUMAN Very-long-chain enoyl-CoA reductase OS=Homo sapiens GN=TECR PE=1 SV=1 Back     alignment and function description
>sp|Q64232|TECR_RAT Very-long-chain enoyl-CoA reductase OS=Rattus norvegicus GN=Tecr PE=2 SV=1 Back     alignment and function description
>sp|Q9CY27|TECR_MOUSE Very-long-chain enoyl-CoA reductase OS=Mus musculus GN=Tecr PE=1 SV=1 Back     alignment and function description
>sp|Q3ZCD7|TECR_BOVIN Very-long-chain enoyl-CoA reductase OS=Bos taurus GN=TECR PE=2 SV=1 Back     alignment and function description
>sp|Q5HYJ1|TECRL_HUMAN Trans-2,3-enoyl-CoA reductase-like OS=Homo sapiens GN=TECRL PE=2 SV=1 Back     alignment and function description
>sp|Q8BFZ1|TECRL_MOUSE Trans-2,3-enoyl-CoA reductase-like OS=Mus musculus GN=Tecrl PE=2 SV=1 Back     alignment and function description
>sp|Q3SZ89|TECRL_BOVIN Trans-2,3-enoyl-CoA reductase-like OS=Bos taurus GN=TECRL PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query273
255580033310 Synaptic glycoprotein SC2, putative [Ric 1.0 0.880 0.908 1e-147
157673580310 trans-2-enoyl-CoA reductase [Gossypium h 1.0 0.880 0.879 1e-144
147866000310 hypothetical protein VITISV_043115 [Viti 1.0 0.880 0.871 1e-144
224098417310 predicted protein [Populus trichocarpa] 1.0 0.880 0.875 1e-143
224112781310 predicted protein [Populus trichocarpa] 1.0 0.880 0.871 1e-143
449450010310 PREDICTED: very-long-chain enoyl-CoA red 1.0 0.880 0.871 1e-143
356554350309 PREDICTED: trans-2,3-enoyl-CoA reductase 0.996 0.880 0.867 1e-140
62866633310 TSC13 protein [Nicotiana benthamiana] 1.0 0.880 0.849 1e-140
297820296310 enoyl-CoA reductase [Arabidopsis lyrata 1.0 0.880 0.842 1e-140
359806803309 uncharacterized protein LOC100785393 [Gl 0.996 0.880 0.867 1e-139
>gi|255580033|ref|XP_002530850.1| Synaptic glycoprotein SC2, putative [Ricinus communis] gi|223529574|gb|EEF31524.1| Synaptic glycoprotein SC2, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 248/273 (90%), Positives = 262/273 (95%)

Query: 1   QKFYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLGPQVSYRTLFF 60
           +KFYPSRQRLTLPLPPGSK R T L+YKKSLK+Y DGNS N+TVVFKDLGPQVSYRTLFF
Sbjct: 38  KKFYPSRQRLTLPLPPGSKDRPTVLNYKKSLKDYCDGNSDNITVVFKDLGPQVSYRTLFF 97

Query: 61  FEYLGPLILYPIFYYFPVYQFFGYKGERVIHPVQTYALYYWCFHYFKRIMETFFVHRFSH 120
           FEYLGPLILYP+FY+FPVY++FGYK ERVIHPVQTYA+YYWCFHYFKRIMETFFVHRFSH
Sbjct: 98  FEYLGPLILYPVFYFFPVYKYFGYKEERVIHPVQTYAMYYWCFHYFKRIMETFFVHRFSH 157

Query: 121 ATSPISNVFRNCAYYWSFGSFIAYYVNHPLYTPVSDLQMKIGFAFGIICQIANFYCHILL 180
           ATSP+SNVFRNCAYYW+FGS+IAYYVNHPLYTPV DLQMKIGF FG+ICQIANFYCHILL
Sbjct: 158 ATSPLSNVFRNCAYYWTFGSYIAYYVNHPLYTPVGDLQMKIGFGFGLICQIANFYCHILL 217

Query: 181 KNLRSADGSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAALIMTN 240
           KNLRS DGSGGYQIP GFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAA IMTN
Sbjct: 218 KNLRSPDGSGGYQIPHGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAASIMTN 277

Query: 241 WALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL 273
           WALAKHRRL+KLFDGKDGRPKYPRRWVILPPFL
Sbjct: 278 WALAKHRRLRKLFDGKDGRPKYPRRWVILPPFL 310

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|157673580|gb|ABV60089.1| trans-2-enoyl-CoA reductase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|147866000|emb|CAN83052.1| hypothetical protein VITISV_043115 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224098417|ref|XP_002311166.1| predicted protein [Populus trichocarpa] gi|118485224|gb|ABK94472.1| unknown [Populus trichocarpa] gi|118487624|gb|ABK95637.1| unknown [Populus trichocarpa] gi|222850986|gb|EEE88533.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224112781|ref|XP_002316290.1| predicted protein [Populus trichocarpa] gi|222865330|gb|EEF02461.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449450010|ref|XP_004142757.1| PREDICTED: very-long-chain enoyl-CoA reductase-like [Cucumis sativus] gi|449483843|ref|XP_004156709.1| PREDICTED: very-long-chain enoyl-CoA reductase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356554350|ref|XP_003545510.1| PREDICTED: trans-2,3-enoyl-CoA reductase-like isoform 1 [Glycine max] gi|356554352|ref|XP_003545511.1| PREDICTED: trans-2,3-enoyl-CoA reductase-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|62866633|gb|AAY17262.1| TSC13 protein [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|297820296|ref|XP_002878031.1| enoyl-CoA reductase [Arabidopsis lyrata subsp. lyrata] gi|297323869|gb|EFH54290.1| enoyl-CoA reductase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|359806803|ref|NP_001241563.1| uncharacterized protein LOC100785393 [Glycine max] gi|255646198|gb|ACU23584.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query273
TAIR|locus:2099911310 CER10 "AT3G55360" [Arabidopsis 1.0 0.880 0.835 1.4e-133
DICTYBASE|DDB_G0270270300 gpsn2 "synaptic glycoprotein S 0.941 0.856 0.434 3.4e-54
UNIPROTKB|F1PZL2350 TECR "Uncharacterized protein" 0.937 0.731 0.418 6e-48
UNIPROTKB|B3KSQ1323 TECR "Very-long-chain enoyl-Co 0.937 0.792 0.418 6e-48
UNIPROTKB|Q9NZ01308 TECR "Very-long-chain enoyl-Co 0.937 0.831 0.418 6e-48
UNIPROTKB|F1SCF9302 TECR "Uncharacterized protein" 0.937 0.847 0.418 6e-48
WB|WBGene00000198308 art-1 [Caenorhabditis elegans 0.860 0.762 0.404 6e-48
UNIPROTKB|Q3ZCD7308 TECR "Very-long-chain enoyl-Co 0.934 0.827 0.416 9.8e-48
RGD|620376308 Tecr "trans-2,3-enoyl-CoA redu 0.934 0.827 0.416 9.8e-48
MGI|MGI:1915408308 Tecr "trans-2,3-enoyl-CoA redu 0.934 0.827 0.416 1.2e-47
TAIR|locus:2099911 CER10 "AT3G55360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1309 (465.8 bits), Expect = 1.4e-133, P = 1.4e-133
 Identities = 228/273 (83%), Positives = 252/273 (92%)

Query:     1 QKFYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLGPQVSYRTLFF 60
             +KFYPSRQRLTLP+ PGSK +   L+ KKSLKEY DGN+ +LTVVFKDLG QVSYRTLFF
Sbjct:    38 KKFYPSRQRLTLPVTPGSKDKPVVLNSKKSLKEYCDGNNNSLTVVFKDLGAQVSYRTLFF 97

Query:    61 FEYLGPLILYPIFYYFPVYQFFGYKGERVIHPVQTYALYYWCFHYFKRIMETFFVHRFSH 120
             FEYLGPL++YP+FYYFPVY+F GY  + VIHPVQTYA+YYWCFHYFKRI+ETFFVHRFSH
Sbjct:    98 FEYLGPLLIYPVFYYFPVYKFLGYGEDCVIHPVQTYAMYYWCFHYFKRILETFFVHRFSH 157

Query:   121 ATSPISNVFRNCAYYWSFGSFIAYYVNHPLYTPVSDLQMKIGFAFGIICQIANFYCHILL 180
             ATSPI NVFRNCAYYWSFG++IAYYVNHPLYTPVSDLQMKIGF FG++CQ+ANFYCHILL
Sbjct:   158 ATSPIGNVFRNCAYYWSFGAYIAYYVNHPLYTPVSDLQMKIGFGFGLVCQVANFYCHILL 217

Query:   181 KNLRSADGSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAALIMTN 240
             KNLR   G+GGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQT+AGY+FL VAALIMTN
Sbjct:   218 KNLRDPSGAGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTIAGYVFLAVAALIMTN 277

Query:   241 WALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL 273
             WAL KH RL+K+FDGKDG+PKYPRRWVILPPFL
Sbjct:   278 WALGKHSRLRKIFDGKDGKPKYPRRWVILPPFL 310
GO:0003865 "3-oxo-5-alpha-steroid 4-dehydrogenase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=IEA
GO:0006629 "lipid metabolic process" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA
GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=IGI
GO:0005789 "endoplasmic reticulum membrane" evidence=IDA
GO:0006665 "sphingolipid metabolic process" evidence=IMP
GO:0009922 "fatty acid elongase activity" evidence=IMP
GO:0009923 "fatty acid elongase complex" evidence=TAS
GO:0010025 "wax biosynthetic process" evidence=IMP
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0046520 "sphingoid biosynthetic process" evidence=RCA
DICTYBASE|DDB_G0270270 gpsn2 "synaptic glycoprotein SC2-like protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1PZL2 TECR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B3KSQ1 TECR "Very-long-chain enoyl-CoA reductase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NZ01 TECR "Very-long-chain enoyl-CoA reductase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SCF9 TECR "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
WB|WBGene00000198 art-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZCD7 TECR "Very-long-chain enoyl-CoA reductase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|620376 Tecr "trans-2,3-enoyl-CoA reductase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1915408 Tecr "trans-2,3-enoyl-CoA reductase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q64232TECR_RAT1, ., 3, ., 1, ., 3, 80.40640.93400.8279yesno
Q9M2U2ECR_ARATH1, ., 3, ., 1, ., 9, 30.83511.00.8806yesno
Q55C17TECR_DICDI1, ., 3, ., 1, ., 3, 80.43440.94130.8566yesno
Q9N5Y2TECR_CAEEL1, ., 3, ., 1, ., 9, 30.38650.95230.8441yesno
O94511YN67_SCHPO1, ., 3, ., 1, ., 3, 80.37540.87910.8135yesno
Q3ZCD7TECR_BOVIN1, ., 3, ., 1, ., 3, 80.40280.93400.8279yesno
Q9NZ01TECR_HUMAN1, ., 3, ., 1, ., 3, 80.40500.93040.8246yesno
Q9CY27TECR_MOUSE1, ., 3, ., 1, ., 3, 80.40640.93400.8279yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018488001
SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_17, whole genome shotgun sequence); (310 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00004862001
SubName- Full=Chromosome undetermined scaffold_833, whole genome shotgun sequence; (206 aa)
   • •• 0.514
GSVIVG00003631001
SubName- Full=Chromosome undetermined scaffold_147, whole genome shotgun sequence; (483 aa)
    • • 0.426

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query273
PLN02560308 PLN02560, PLN02560, enoyl-CoA reductase 0.0
pfam02544150 pfam02544, Steroid_dh, 3-oxo-5-alpha-steroid 4-deh 8e-26
PLN02392260 PLN02392, PLN02392, probable steroid reductase DET 6e-08
PLN03164323 PLN03164, PLN03164, 3-oxo-5-alpha-steroid 4-dehydr 9e-04
>gnl|CDD|178174 PLN02560, PLN02560, enoyl-CoA reductase Back     alignment and domain information 
 Score =  526 bits (1356), Expect = 0.0
 Identities = 224/274 (81%), Positives = 249/274 (90%), Gaps = 4/274 (1%)

Query: 1   QKFYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLGPQVSYRTLFF 60
           +K+YPSRQRLTLPLPPG K R T LD  KSLK+Y  G+ G  TVVFKDLGPQVSYRTLFF
Sbjct: 38  KKYYPSRQRLTLPLPPG-KTRPTVLDDSKSLKDYGLGDGG--TVVFKDLGPQVSYRTLFF 94

Query: 61  FEYLGPLILYPIFYYFP-VYQFFGYKGERVIHPVQTYALYYWCFHYFKRIMETFFVHRFS 119
           FEYLGPL++YP+FY+FP VY++FGY   RVIHPVQTYA+YYWCFHY KRI+ETFFVHRFS
Sbjct: 95  FEYLGPLLIYPLFYFFPQVYKYFGYPARRVIHPVQTYAMYYWCFHYAKRILETFFVHRFS 154

Query: 120 HATSPISNVFRNCAYYWSFGSFIAYYVNHPLYTPVSDLQMKIGFAFGIICQIANFYCHIL 179
           HATSP+ NVFRNCAYYW+FG++IAY+VNHPLYTPVS+ QMK+GF FG++CQ+ANFYCHI+
Sbjct: 155 HATSPLFNVFRNCAYYWTFGAYIAYFVNHPLYTPVSETQMKVGFGFGLVCQLANFYCHII 214

Query: 180 LKNLRSADGSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAALIMT 239
           L+NLR  DG GGYQIPRGFLFN VTCANYTTEIYQWLGFNIATQTVAGY+FL VAA IMT
Sbjct: 215 LRNLRKPDGKGGYQIPRGFLFNYVTCANYTTEIYQWLGFNIATQTVAGYLFLAVAAAIMT 274

Query: 240 NWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL 273
           NWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL
Sbjct: 275 NWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL 308

Length = 308
>gnl|CDD|217095 pfam02544, Steroid_dh, 3-oxo-5-alpha-steroid 4-dehydrogenase Back     alignment and domain information
>gnl|CDD|178015 PLN02392, PLN02392, probable steroid reductase DET2 Back     alignment and domain information
>gnl|CDD|215610 PLN03164, PLN03164, 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 273
PLN02560308 enoyl-CoA reductase 100.0
KOG1639297 consensus Steroid reductase required for elongatio 100.0
KOG1638257 consensus Steroid reductase [Lipid transport and m 100.0
PLN02392260 probable steroid reductase DET2 100.0
PLN03164323 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal 100.0
PF02544150 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase 100.0
KOG1640304 consensus Predicted steroid reductase [Lipid trans 100.0
PF06966235 DUF1295: Protein of unknown function (DUF1295); In 99.76
COG3752272 Steroid 5-alpha reductase family enzyme [General f 99.62
KOG4650311 consensus Predicted steroid reductase [General fun 99.13
PF01222432 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 fam 98.99
PF04191106 PEMT: Phospholipid methyltransferase ; InterPro: I 98.81
COG2020187 STE14 Putative protein-S-isoprenylcysteine methylt 98.73
KOG1435428 consensus Sterol reductase/lamin B receptor [Lipid 98.63
cd0180177 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N- 98.32
PF0414094 ICMT: Isoprenylcysteine carboxyl methyltransferase 97.8
KOG2628201 consensus Farnesyl cysteine-carboxyl methyltransfe 97.41
COG1755172 Uncharacterized protein conserved in bacteria [Fun 96.66
cd0179280 ISG15_repeat1 ISG15 ubiquitin-like protein, first 96.64
cd0179173 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know 96.63
cd0180478 midnolin_N Ubiquitin-like domain of midnolin. midn 95.51
cd0180577 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo 94.73
cd0181271 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter 93.88
PF0024069 ubiquitin: Ubiquitin family; InterPro: IPR000626 U 93.87
cd0180376 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 93.48
cd0180676 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn 93.3
cd0181575 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC 93.23
cd0181074 ISG15_repeat2 ISG15 ubiquitin-like protein, second 92.6
cd0180871 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC 92.2
cd0180972 Scythe_N Ubiquitin-like domain of Scythe protein. 92.02
cd0179374 Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui 91.56
cd0180076 SF3a120_C Ubiquitin-like domain of Mammalian splic 90.98
PF1456087 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K 90.91
cd0176969 UBL Ubiquitin-like domain of UBL. UBLs function by 90.71
cd0179470 DC_UbP_C dendritic cell derived ubiquitin-like pro 90.41
cd0181374 UBP_N UBP ubiquitin processing protease. The UBP ( 90.16
cd0180774 GDX_N ubiquitin-like domain of GDX. GDX contains a 89.7
cd0179870 parkin_N amino-terminal ubiquitin-like of parkin p 89.68
PTZ0004476 ubiquitin; Provisional 89.68
smart0021364 UBQ Ubiquitin homologues. Ubiquitin-mediated prote 89.33
cd01802103 AN1_N ubiquitin-like domain of AN1. AN1 (also know 89.2
cd0179778 NIRF_N amino-terminal ubiquitin-like domain of Np9 88.25
cd01795107 USP48_C USP ubiquitin-specific protease. The USP ( 88.18
cd0178984 Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol 88.12
cd0179671 DDI1_N DNA damage inducible protein 1 ubiquitin-li 85.33
PLN02797164 phosphatidyl-N-dimethylethanolamine N-methyltransf 83.42
TIGR00601378 rad23 UV excision repair protein Rad23. All protei 81.77
>PLN02560 enoyl-CoA reductase Back     alignment and domain information 
Probab=100.00  E-value=2.2e-85  Score=607.15  Aligned_cols=267  Identities=81%  Similarity=1.494  Sum_probs=246.5

Q ss_pred             CCCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccCCCCchHHHHHHHHHHHHHHHHHHHhhccccc
Q 043518            2 KFYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLGPQVSYRTLFFFEYLGPLILYPIFYYFPVYQF   81 (273)
Q Consensus         2 ~~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG~qi~~r~~f~~Ey~gPl~i~~~~~~~~~~~y   81 (273)
                      +++|+|||++++.++++ .+++.|+|+++|+|+|+++|+  +++||||||||||||||++||+||++++++||++++ +|
T Consensus        39 ~~~~~RqRL~~~~~~gk-~~g~~L~d~ktL~d~gv~~gs--tLy~kDLGpQi~wrtVF~~EY~GPl~i~~l~y~~~~-~y  114 (308)
T PLN02560         39 KYYPSRQRLTLPLPPGK-TRPTVLDDSKSLKDYGLGDGG--TVVFKDLGPQVSYRTLFFFEYLGPLLIYPLFYFFPQ-VY  114 (308)
T ss_pred             CCChhheEEEEecCCCC-cCccccCCCCCHHhcCCCCCc--eEEEEeCCCcCchhhhHHHHhhhHHHHHHHHHHhhh-hh
Confidence            35789999998644342 467788999999999999999  999999999999999999999999999999999888 88


Q ss_pred             cCC--CCCCcCCcHHHHHHHHHHHHHhhhhheehhccccCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHH
Q 043518           82 FGY--KGERVIHPVQTYALYYWCFHYFKRIMETFFVHRFSHATSPISNVFRNCAYYWSFGSFIAYYVNHPLYTPVSDLQM  159 (273)
Q Consensus        82 ~~~--~~~~~~~~~~~l~~~l~~~Hy~kR~~Et~fv~~fS~~~mpl~~~~~~~~~Y~~~~~~i~~~~~~~~y~~~~~~~~  159 (273)
                      +..  +.....+..|.++++|+++||+||++||+||||||++|||+.|+++||+|||+++..++++++||.|++..+.+.
T Consensus       115 ~~~~~~~~~~~~~~~~l~~~~~~~Hy~kR~~Et~fvhrfS~~tmpl~n~~~n~~~Yw~~~~~~~y~~~~~~~~~~~~~~~  194 (308)
T PLN02560        115 KYFGYPARRVIHPVQTYAMYYWCFHYAKRILETFFVHRFSHATSPLFNVFRNCAYYWTFGAYIAYFVNHPLYTPVSETQM  194 (308)
T ss_pred             cccccCcCCCCchHHHHHHHHHHHHHHHHhhheeeeEeecCCCccHHHHHHHHHHHHHHHHHHhhhcccCCccccchhHH
Confidence            622  123445688999999999999999999999999999999999999999999999999999999998876667788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCC-CCCCcccccCCccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 043518          160 KIGFAFGIICQIANFYCHILLKNLRSAD-GSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAALIM  238 (273)
Q Consensus       160 ~~G~~lF~ig~~~n~~~h~~L~~LR~~~-g~~~y~iP~gglF~~VscPNYf~Eil~w~gf~l~~~s~~~~lf~~~~~~~m  238 (273)
                      ++|+++|++|+++|++||.+|++|| ++ |+++|+||+||||++|||||||+||++|+||+++++++++++|++++++||
T Consensus       195 ~~g~~lf~~~~~~N~~~h~~L~~LR-~~~g~~~y~IP~g~lF~~VscPnY~~Ei~~W~gf~~~t~~~~~~~F~~~~~~~m  273 (308)
T PLN02560        195 KVGFGFGLVCQLANFYCHIILRNLR-KPDGKGGYQIPRGFLFNYVTCANYTTEIYQWLGFNIATQTVAGYLFLAVAAAIM  273 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCeeCCCCCCcCeecCCcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999 76 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Q 043518          239 TNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL  273 (273)
Q Consensus       239 ~~~A~~~h~wY~kkFg~~~~~~~Ypk~RkalIPfi  273 (273)
                      .+||.+||+||+|||+|+||+++|||+|++++||+
T Consensus       274 ~~wA~~kh~~Y~k~F~d~~~~~~yp~~~~~~pp~~  308 (308)
T PLN02560        274 TNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL  308 (308)
T ss_pred             HHHHHHHHHHHHHhccCccccccCCCceEeCCCcC
Confidence            99999999999999999999999999888888985

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism] Back     alignment and domain information
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism] Back     alignment and domain information
>PLN02392 probable steroid reductase DET2 Back     alignment and domain information
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional Back     alignment and domain information
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1 Back     alignment and domain information
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism] Back     alignment and domain information
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long Back     alignment and domain information
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only] Back     alignment and domain information
>KOG4650 consensus Predicted steroid reductase [General function prediction only] Back     alignment and domain information
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis Back     alignment and domain information
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2 Back     alignment and domain information
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13 Back     alignment and domain information
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2 Back     alignment and domain information
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 Back     alignment and domain information
>cd01791 Ubl5 UBL5 ubiquitin-like modifier Back     alignment and domain information
>cd01804 midnolin_N Ubiquitin-like domain of midnolin Back     alignment and domain information
>cd01805 RAD23_N Ubiquitin-like domain of RAD23 Back     alignment and domain information
>cd01812 BAG1_N Ubiquitin-like domain of BAG1 Back     alignment and domain information
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade Back     alignment and domain information
>cd01803 Ubiquitin Ubiquitin Back     alignment and domain information
>cd01806 Nedd8 Nebb8-like ubiquitin protein Back     alignment and domain information
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP Back     alignment and domain information
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 Back     alignment and domain information
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 Back     alignment and domain information
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein Back     alignment and domain information
>cd01793 Fubi Fubi ubiquitin-like protein Back     alignment and domain information
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 Back     alignment and domain information
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A Back     alignment and domain information
>cd01769 UBL Ubiquitin-like domain of UBL Back     alignment and domain information
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein Back     alignment and domain information
>cd01813 UBP_N UBP ubiquitin processing protease Back     alignment and domain information
>cd01807 GDX_N ubiquitin-like domain of GDX Back     alignment and domain information
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein Back     alignment and domain information
>PTZ00044 ubiquitin; Provisional Back     alignment and domain information
>smart00213 UBQ Ubiquitin homologues Back     alignment and domain information
>cd01802 AN1_N ubiquitin-like domain of AN1 Back     alignment and domain information
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF Back     alignment and domain information
>cd01795 USP48_C USP ubiquitin-specific protease Back     alignment and domain information
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B Back     alignment and domain information
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain Back     alignment and domain information
>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase Back     alignment and domain information
>TIGR00601 rad23 UV excision repair protein Rad23 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query273
4a2n_B194 Isoprenylcysteine carboxyl methyltransferase; memb 99.54
2dzj_A88 Synaptic glycoprotein SC2; ubiquitin-like fold, st 98.25
1yx5_B98 Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s 97.6
1v6e_A95 Cytoskeleton-associated protein 1; tubulin-specifi 97.25
1t0y_A122 Tubulin folding cofactor B; ubiquitin-like, cytosk 96.8
3u5e_m128 60S ribosomal protein L40; translation, ribosome, 96.16
1ndd_A76 NEDD8, protein (ubiquitin-like protein NEDD8); pro 96.01
1wh3_A87 59 kDa 2'-5'-oligoadenylate synthetase like protei 95.97
3a9j_A76 Ubiquitin; protein complex, cytoplasm, isopeptide 95.6
1sif_A88 Ubiquitin; hydrophobic mutants, folding, stability 95.47
2kzr_A86 Ubiquitin thioesterase OTU1; structural genomics, 95.47
3n3k_B85 Ubiquitin; hydrolase, protease, thiol protease, DU 95.46
3phx_B79 Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu 95.44
2bwf_A77 Ubiquitin-like protein DSK2; signaling protein, UB 95.42
1wy8_A89 NP95-like ring finger protein, isoform A; ubiquiti 95.22
3mtn_B85 UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit 95.15
4fbj_B88 NEDD8; effector-HOST target complex, glutamine dea 95.12
3k9o_B96 Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b 95.08
2wyq_A85 HHR23A, UV excision repair protein RAD23 homolog A 95.07
2hj8_A88 Interferon-induced 17 kDa protein; HR2873B, human 94.99
2faz_A78 Ubiquitin-like containing PHD and ring finger DOM 94.95
1uel_A95 HHR23B, UV excision repair protein RAD23 homolog B 94.81
2l7r_A93 Ubiquitin-like protein FUBI; structural genomics, 94.75
2kdi_A114 Ubiquitin, vacuolar protein sorting-associated pro 94.62
4hcn_B98 Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas 94.61
1uh6_A100 Ubiquitin-like 5; beta-grAsp fold, structural geno 94.6
3dbh_I88 NEDD8; cell cycle, activating enzyme, apoptosis, m 94.58
3v6c_B91 Ubiquitin; structural genomics, structural genomic 94.57
2dzi_A81 Ubiquitin-like protein 4A; GDX, structural genomic 94.51
2kd0_A85 LRR repeats and ubiquitin-like domain-containing p 94.51
2uyz_B79 Small ubiquitin-related modifier 1; sumoylation, c 94.51
2kk8_A84 Uncharacterized protein AT4G05270; solution arabid 94.49
4b6w_A86 Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik 94.45
2kan_A94 Uncharacterized protein AR3433A; ubiquitin fold, a 94.31
1wgd_A93 Homocysteine-responsive endoplasmic reticulum- res 94.18
1we6_A111 Splicing factor, putative; structural genomics, ub 94.12
2klc_A101 Ubiquilin-1; ubiquitin-like, structural genomics, 94.07
1yqb_A100 Ubiquilin 3; structural genomics consortium, ubiqu 94.0
3plu_A93 Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- 93.99
3m63_B101 Ubiquitin domain-containing protein DSK2; armadill 93.93
1j8c_A125 Ubiquitin-like protein hplic-2; ubiquitin-like dom 93.83
2ojr_A111 Ubiquitin; lanthide-binding TAG, terbium, TB, SAD 93.79
3m62_B106 UV excision repair protein RAD23; armadillo-like r 93.61
4a20_A98 Ubiquitin-like protein MDY2; protein binding, GET- 93.55
3vdz_A111 Ubiquitin-40S ribosomal protein S27A; gadolinium, 93.54
1we7_A115 SF3A1 protein; structural genomics, ubiquitin-like 93.41
2daf_A118 FLJ35834 protein; hypothetical protein FLJ35834, u 93.35
1wia_A95 Hypothetical ubiquitin-like protein (riken cDNA 20 93.33
1wx7_A106 Ubiquilin 3; ubiquitin-like domain, structural gen 93.21
1v5t_A90 8430435I17RIK protein; hypothetical protein, ubiqu 93.2
1v5o_A102 1700011N24RIK protein; hypothetical protein, ubiqu 92.92
1wx8_A96 Riken cDNA 4931431F19; ubiquitin-like domain, ubiq 92.89
1ttn_A106 DC-UBP, dendritic cell-derived ubiquitin-like prot 92.77
1wyw_B97 Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho 92.7
3l0w_B169 Monoubiquitinated proliferating cell nuclear antig 92.68
3b1l_X76 E3 ubiquitin-protein ligase parkin; proteasome, AL 91.84
4eew_A88 Large proline-rich protein BAG6; ubiquitin-like fo 92.44
4dwf_A90 HLA-B-associated transcript 3; ubiquitin-like doma 92.29
4ajy_B118 Transcription elongation factor B polypeptide 2; E 91.94
2kj6_A97 Tubulin folding cofactor B; methods development, N 91.89
1wju_A100 NEDD8 ultimate buster-1; ubiquitin-like domain, st 91.81
4dbg_A105 Ranbp-type and C3HC4-type zinc finger-containing; 91.66
1wgg_A96 Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti 91.36
1wxv_A92 BAG-family molecular chaperone regulator-1; struct 91.17
1x1m_A107 Ubiquitin-like protein SB132; structural genomics, 91.01
1wf9_A107 NPL4 family protein; beta-grAsp fold like domain, 90.99
1wjn_A97 Tubulin-folding protein TBCE; ubiquitin-like domai 90.85
3b08_A152 Polyubiquitin-C, ubiquitin; protein complex, signa 90.33
3rt3_B159 Ubiquitin-like protein ISG15; ubiquitin-like domai 90.0
2lxa_A87 Ubiquitin-like protein MDY2; ubiquitin-like domain 89.99
3u30_A172 Ubiquitin, linear DI-ubiquitin; immune system; 2.4 89.82
2fnj_B118 Transcription elongation factor B polypeptide 2; b 89.8
2kjr_A95 CG11242; UBL, ubiquitin, ubiquitin-like, structura 89.38
2dzm_A100 FAS-associated factor 1; ubiquitin-like domain, HF 88.3
1v86_A95 DNA segment, CHR 7, wayne state university 128, ex 87.71
2kdb_A99 Homocysteine-responsive endoplasmic reticulum- res 87.54
3u5c_f152 40S ribosomal protein S31; translation, ribosome, 87.37
2gow_A125 HCG-1 protein, ubiquitin-like protein 3; BC059385, 85.98
1wgh_A116 Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo 85.25
1oqy_A368 HHR23A, UV excision repair protein RAD23 homolog A 84.9
1se9_A126 Ubiquitin family; ubiquitin-like, cell-free, wheat 84.23
3shq_A320 UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila 80.38
1v2y_A105 3300001G02RIK protein; hypothetical protein, ubiqu 80.15
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans} Back     alignment and structure
Probab=99.54  E-value=1.7e-14  Score=124.86  Aligned_cols=117  Identities=14%  Similarity=0.033  Sum_probs=91.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHhh-cccC-CCCCCcccccCCccccccccchhHHHHHHHHHHHHhhhHHHHHH-
Q 043518          154 VSDLQMKIGFAFGIICQIANFYCHILLKN-LRSA-DGSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIF-  230 (273)
Q Consensus       154 ~~~~~~~~G~~lF~ig~~~n~~~h~~L~~-LR~~-~g~~~y~iP~gglF~~VscPNYf~Eil~w~gf~l~~~s~~~~lf-  230 (273)
                      ...+..++|++++++|......++.+|.+ ++.. +..++.++.++|+|++|+||||++|++.|+|++++++++.+++. 
T Consensus        73 ~p~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s~~~~~~~  152 (194)
T 4a2n_B           73 LPDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIFG  152 (194)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhccHHHHHHH
Confidence            35678899999999999999999999954 4421 11245678899999999999999999999999999887765542 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Q 043518          231 -LVVAALIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL  273 (273)
Q Consensus       231 -~~~~~~~m~~~A~~~h~wY~kkFg~~~~~~~Ypk~RkalIPfi  273 (273)
                       +++.+. +..++..-+++.+++||++  |++|.++.+++||+|
T Consensus       153 ~~~~~~~-~~~ri~~EE~~L~~~fG~~--Y~~Y~~rv~r~iP~i  193 (194)
T 4a2n_B          153 IVAWAIL-YFIRVPKEEELLIEEFGDE--YIEYMGKTGRLFPKV  193 (194)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHTHH--HHHHHHHCBSSSCC-
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHhCHH--HHHHHHhCCeeCcee
Confidence             223333 3467777888889999964  478888888999986
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Back     alignment and structure
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Back     alignment and structure
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Back     alignment and structure
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Back     alignment and structure
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Back     alignment and structure
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Back     alignment and structure
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Back     alignment and structure
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Back     alignment and structure
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Back     alignment and structure
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Back     alignment and structure
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Back     alignment and structure
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Back     alignment and structure
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Back     alignment and structure
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I Back     alignment and structure
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B Back     alignment and structure
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B Back     alignment and structure
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927} Back     alignment and structure
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Back     alignment and structure
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Back     alignment and structure
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Back     alignment and structure
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A Back     alignment and structure
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A Back     alignment and structure
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Back     alignment and structure
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Back     alignment and structure
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Back     alignment and structure
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Back     alignment and structure
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Back     alignment and structure
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Back     alignment and structure
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Back     alignment and structure
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A* Back     alignment and structure
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Back     alignment and structure
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Back     alignment and structure
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Back     alignment and structure
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Back     alignment and structure
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Back     alignment and structure
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} Back     alignment and structure
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Back     alignment and structure
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f Back     alignment and structure
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Back     alignment and structure
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Back     alignment and structure
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Back     alignment and structure
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query273
d1z2ma176 Interferon-induced 15 kDa protein {Human (Homo sap 96.31
d1oqya477 Ubiquitin-like domain of Rad23 homolog A (Hhr23a) 95.17
d1x1ma194 Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta 95.15
d1wjna_97 Tubulin-folding protein TbcE {Mouse (Mus musculus) 95.09
d1zkha186 Splicing factor 3 subunit 1, C-terminal domain {Hu 95.09
d1ogwa_76 Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} 94.99
d1m94a_73 Ubiquitin-like modifier protein hub1 {Baker's yeas 94.96
d1z2ma276 Interferon-induced 15 kDa protein {Human (Homo sap 94.87
d1uh6a_100 Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu 94.69
d2faza176 Ubiquitin-like PHD and RING finger domain-containi 94.68
d1yqba184 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 94.57
d1wh3a_87 2'-5'-oligoadenylate synthetase-like protein, OASL 94.19
d1we6a_111 Splicing factor 3 subunit 1, C-terminal domain {Th 94.16
d1bt0a_73 Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI 94.16
d1uela_95 Ubiquitin-like domain of Rad23 homolog B (Hhr23B) 94.07
d1wx8a183 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] 93.99
d2bwfa173 DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 93.97
d1j8ca_103 Ubiquitin-like N-terminal domain of PLIC-2 {Human 93.86
d1wy8a176 Ubiquitin-like PHD and RING finger domain-containi 93.51
d2zeqa178 Ubiquitin-like domain of parkin {Mouse (Mus muscul 93.22
d1ttna180 Dendritic cell-derived ubiquitin-like protein {Hum 92.73
d1v5ta_90 8430435i17rik protein {Mouse (Mus musculus) [TaxId 92.32
d1wjua_100 NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens 91.71
d1wxva181 Bag-family molecular chaperone regulator-1 {Human 89.94
d1t0ya_90 Ubiquitin-like domain of tubulin folding cofactor 89.33
d1wgha_116 Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu 89.12
d1euvb_79 SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy 89.04
d1wiaa_95 Ubiquitin-like protein bab25500 (2010008E23Rik) {M 88.21
d1v5oa_102 1700011n24rik protein {Mouse (Mus musculus) [TaxId 88.07
d1wgga_96 Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M 87.98
d1v86a_95 hypothetical D7wsu128e protein {Mouse (Mus musculu 87.54
d1se9a_101 Hypothetical protein At3g01050 {Thale cress (Arabi 87.48
d2c9wb1103 Elongin B {Human (Homo sapiens) [TaxId: 9606]} 86.88
d1v6ea_95 Ubiquitin-like domain of tubulin folding cofactor 85.4
d1wx9a173 Large proline-rich protein BAT3 {Human (Homo sapie 84.85
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0014  Score=45.84  Aligned_cols=37  Identities=22%  Similarity=0.243  Sum_probs=30.3

Q ss_pred             CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEE
Q 043518            4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVF   46 (273)
Q Consensus         4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~   46 (273)
                      .|++|||-..      .+|+.|+|+++|++||+++|+.+.+.+
T Consensus        37 p~~~QrLi~~------~~Gk~L~D~~tL~~y~i~~g~~i~lv~   73 (76)
T d1z2ma1          37 HAFQQRLAVH------PSGVALQDRVPLASQGLGPGSTVLLVV   73 (76)
T ss_dssp             CGGGEEEEEE------TTCCBCCSSSCSGGGTCCTTCEEEEEE
T ss_pred             CCccEEEEEc------CCCeeccCCCcHHHcCCCCCCEEEEEE
Confidence            4799999875      568899999999999999999444443
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Back     information, alignment and structure
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure