Citrus Sinensis ID: 043520
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 159 | ||||||
| 359474717 | 663 | PREDICTED: cysteine-rich receptor-like p | 0.779 | 0.187 | 0.503 | 6e-28 | |
| 224100081 | 468 | predicted protein [Populus trichocarpa] | 0.817 | 0.277 | 0.477 | 3e-27 | |
| 255555021 | 686 | ATP binding protein, putative [Ricinus c | 0.905 | 0.209 | 0.434 | 2e-25 | |
| 255555031 | 674 | ATP binding protein, putative [Ricinus c | 0.767 | 0.181 | 0.426 | 2e-24 | |
| 359496581 | 666 | PREDICTED: cysteine-rich receptor-like p | 0.924 | 0.220 | 0.418 | 1e-23 | |
| 296088180 | 699 | unnamed protein product [Vitis vinifera] | 0.924 | 0.210 | 0.412 | 1e-23 | |
| 30686087 | 669 | cysteine-rich receptor-like protein kina | 0.811 | 0.192 | 0.459 | 8e-23 | |
| 13506745 | 658 | receptor-like protein kinase 4 [Arabidop | 0.811 | 0.196 | 0.459 | 8e-23 | |
| 3021270 | 633 | serine/threonine kinase-like protein [Ar | 0.811 | 0.203 | 0.459 | 9e-23 | |
| 24417476 | 658 | unknown [Arabidopsis thaliana] | 0.811 | 0.196 | 0.459 | 1e-22 |
| >gi|359474717|ref|XP_002267916.2| PREDICTED: cysteine-rich receptor-like protein kinase 25-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 87/133 (65%), Gaps = 9/133 (6%)
Query: 21 DDKPTYIYHNCP-SKNFTPNSAYQSNLNLLLSTLRSNATRGSSDKFSKGFYNTTTGHEPN 79
+ P Y+YH CP + F PNS+Y++NLN LS+L SNATR + GFYN T G P
Sbjct: 19 ESAPGYLYHICPNTTTFNPNSSYETNLNFALSSLSSNATRDT------GFYNVTAGRTPP 72
Query: 80 KV-YGLFLCRGDFGAETCQNCVSVATSDTA-QLCPFGKENTIGYEECLLRYSNISFFSVL 137
V YGLFLCRGD ++ CQ+CV+ A ++T Q C K+ I Y+EC+LRYSN SFFS +
Sbjct: 73 DVAYGLFLCRGDVTSQVCQDCVATAVNETVRQRCRGFKQAIIWYDECMLRYSNESFFSQV 132
Query: 138 DTSVRLSQWNVEN 150
S R+S WN +N
Sbjct: 133 SESPRVSMWNTQN 145
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224100081|ref|XP_002334411.1| predicted protein [Populus trichocarpa] gi|222872074|gb|EEF09205.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255555021|ref|XP_002518548.1| ATP binding protein, putative [Ricinus communis] gi|223542393|gb|EEF43935.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|255555031|ref|XP_002518553.1| ATP binding protein, putative [Ricinus communis] gi|223542398|gb|EEF43940.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|359496581|ref|XP_002270035.2| PREDICTED: cysteine-rich receptor-like protein kinase 10-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|296088180|emb|CBI35672.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|30686087|ref|NP_567679.2| cysteine-rich receptor-like protein kinase 10 [Arabidopsis thaliana] gi|334302916|sp|Q8GYA4.3|CRK10_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 10; Short=Cysteine-rich RLK10; AltName: Full=Receptor-like protein kinase 4; Flags: Precursor gi|26450601|dbj|BAC42412.1| putative receptor-like protein kinase 4 RLK4 [Arabidopsis thaliana] gi|29029020|gb|AAO64889.1| At4g23180 [Arabidopsis thaliana] gi|332659319|gb|AEE84719.1| cysteine-rich receptor-like protein kinase 10 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|13506745|gb|AAK28315.1|AF224705_1 receptor-like protein kinase 4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|3021270|emb|CAA18465.1| serine/threonine kinase-like protein [Arabidopsis thaliana] gi|7269165|emb|CAB79273.1| serine/threonine kinase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|24417476|gb|AAN60348.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 159 | ||||||
| TAIR|locus:2121676 | 669 | CRK10 "cysteine-rich RLK (RECE | 0.918 | 0.218 | 0.388 | 4.4e-22 | |
| TAIR|locus:2121626 | 830 | CRK23 "cysteine-rich RLK (RECE | 0.861 | 0.165 | 0.381 | 9.4e-20 | |
| TAIR|locus:2121686 | 645 | CRK19 "cysteine-rich RLK (RECE | 0.968 | 0.238 | 0.337 | 9.7e-20 | |
| TAIR|locus:2121651 | 676 | CRK8 "cysteine-rich RLK (RECEP | 0.955 | 0.224 | 0.337 | 2.2e-19 | |
| TAIR|locus:2121666 | 265 | EP1 "AT4G23170" [Arabidopsis t | 0.955 | 0.573 | 0.347 | 5.1e-19 | |
| TAIR|locus:2195778 | 341 | AT1G61750 "AT1G61750" [Arabido | 0.685 | 0.319 | 0.406 | 8.5e-19 | |
| TAIR|locus:2031341 | 324 | AT1G63550 [Arabidopsis thalian | 0.805 | 0.395 | 0.359 | 3.6e-18 | |
| TAIR|locus:2077147 | 676 | CRK4 "cysteine-rich RLK (RECEP | 0.811 | 0.190 | 0.338 | 4.4e-18 | |
| TAIR|locus:2031311 | 284 | AT1G63570 "AT1G63570" [Arabido | 0.811 | 0.454 | 0.306 | 1.8e-16 | |
| TAIR|locus:2095662 | 252 | AT3G22060 "AT3G22060" [Arabido | 0.880 | 0.555 | 0.286 | 2.3e-16 |
| TAIR|locus:2121676 CRK10 "cysteine-rich RLK (RECEPTOR-like protein kinase) 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 266 (98.7 bits), Expect = 4.4e-22, P = 4.4e-22
Identities = 59/152 (38%), Positives = 78/152 (51%)
Query: 7 FVTALSVQISLTKADDKPTYIYHNCPSK-NFTPNSAYQXXXXXXXXXXXXXATRGSSDKF 65
F+ S S + PTY+YH C + N+T NS Y ++R +S +
Sbjct: 20 FLFLFSFLTSFRVSAQDPTYVYHTCQNTANYTSNSTYNNNLKTLLASL---SSRNAS--Y 74
Query: 66 SKGFYNTTTGHEPNKVYGLFLCRGDFGAETCQNCVSVATSDTAQLCPFGKENTIGYEECL 125
S GF N T G P++V GLF CRGD E C+ CVS A +DT CP KE T+ Y+EC+
Sbjct: 75 STGFQNATVGQAPDRVTGLFNCRGDVSTEVCRRCVSFAVNDTLTRCPNQKEATLYYDECV 134
Query: 126 LRYSNISFFSVLDTSVRLSQWNVENSPSRSFD 157
LRYSN + S L T+ + N N S D
Sbjct: 135 LRYSNQNILSTLITTGGVILVNTRNVTSNQLD 166
|
|
| TAIR|locus:2121626 CRK23 "cysteine-rich RLK (RECEPTOR-like protein kinase) 23" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2121686 CRK19 "cysteine-rich RLK (RECEPTOR-like protein kinase) 19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2121651 CRK8 "cysteine-rich RLK (RECEPTOR-like protein kinase) 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2121666 EP1 "AT4G23170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2195778 AT1G61750 "AT1G61750" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2031341 AT1G63550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2077147 CRK4 "cysteine-rich RLK (RECEPTOR-like protein kinase) 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2031311 AT1G63570 "AT1G63570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2095662 AT3G22060 "AT3G22060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00001153001 | SubName- Full=Chromosome chr2 scaffold_113, whole genome shotgun sequence; (663 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 159 | |||
| pfam01657 | 106 | pfam01657, Stress-antifung, Salt stress response/a | 5e-28 |
| >gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 5e-28
Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 8/110 (7%)
Query: 28 YHNCPSKN----FTPNSAYQSNLNLLLSTLRSNATRGSSDKFSKGFYNTTTGHEPNKVYG 83
+H C S T NS ++SNLN LLS+L SNA + KGF T+G P+ VYG
Sbjct: 1 FHLCSSNTSGNYTTANSTFESNLNALLSSLSSNA----ASSSGKGFAAGTSGAAPDTVYG 56
Query: 84 LFLCRGDFGAETCQNCVSVATSDTAQLCPFGKENTIGYEECLLRYSNISF 133
L CRGD A C++C++ A S+ + CP K I Y+ C LRY + F
Sbjct: 57 LAQCRGDLSASDCRSCLATAVSELRRCCPNKKGGRIWYDSCFLRYESYPF 106
|
This domain is often found in association with the kinase domains pfam00069 or pfam07714. In many proteins it is duplicated. It contains six conserved cysteines which are involved in disulphide bridges. It has a role in salt stress response and has antifungal activity. Length = 106 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 159 | |||
| PF01657 | 106 | Stress-antifung: Salt stress response/antifungal; | 99.95 |
| >PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-29 Score=176.11 Aligned_cols=102 Identities=42% Similarity=0.841 Sum_probs=77.8
Q ss_pred ccCCC-C--CCc-CCCcHHHHHHHHHHHHHHHHhccCCCCccccCeeeeecCCCCCeeEEeccccCCCCccchHHHHHHH
Q 043520 28 YHNCP-S--KNF-TPNSAYQSNLNLLLSTLRSNATRGSSDKFSKGFYNTTTGHEPNKVYGLFLCRGDFGAETCQNCVSVA 103 (159)
Q Consensus 28 ~~~C~-~--~~~-~~~s~f~~~l~~ll~~L~~~a~~~~~~~~~~~f~~~~~g~~~~~vYglaqC~~Dls~~~C~~Cl~~a 103 (159)
|+.|+ + +++ +++++|+.+++.+|..|+..++...+ .+|++++.|.+++++|||+||++|+++++|+.||+.+
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~----~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a 76 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSS----KGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADA 76 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-----TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccc----cCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHH
Confidence 78899 3 566 57888999999999999999875421 5899998888889999999999999999999999999
Q ss_pred HHHhhhhCCCCceEEEEcCceEEEEcCccc
Q 043520 104 TSDTAQLCPFGKENTIGYEECLLRYSNISF 133 (159)
Q Consensus 104 ~~~~~~~C~~~~ga~i~~~~C~lRYs~~~F 133 (159)
+..++++|++++||+||+++|+||||+++|
T Consensus 77 ~~~~~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 77 VANISSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HCCHHHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHHHHHhCCCCceEEEECCCEEEEEECCCC
Confidence 999999999999999999999999999998
|
The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 159 | |||
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 1e-28 |
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 159 | |||
| 3a2e_A | 108 | Ginkbilobin-2; domain 26 unknown function (DUF26), | 99.97 | |
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 99.97 |
| >3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-32 Score=191.91 Aligned_cols=106 Identities=19% Similarity=0.485 Sum_probs=97.1
Q ss_pred CCcccccCCCCCCcCCCcHHHHHHHHHHHHHHHHhccCCCCccccCeeeeecC-CCCCeeEEeccccCCCCccchHHHHH
Q 043520 23 KPTYIYHNCPSKNFTPNSAYQSNLNLLLSTLRSNATRGSSDKFSKGFYNTTTG-HEPNKVYGLFLCRGDFGAETCQNCVS 101 (159)
Q Consensus 23 ~p~~~~~~C~~~~~~~~s~f~~~l~~ll~~L~~~a~~~~~~~~~~~f~~~~~g-~~~~~vYglaqC~~Dls~~~C~~Cl~ 101 (159)
++.++++.|+.++++++++|++||+.||..|+.+++.++ .+|++...| .++++||||+||+||+++++|+.||+
T Consensus 2 ~t~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~-----~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~ 76 (108)
T 3a2e_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSG-----YDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLS 76 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTT-----SEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHH
T ss_pred CcceeeeecCCCccCCCChHHHHHHHHHHHHHhhCcccc-----CCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHH
Confidence 567899999889999999999999999999999987654 567777665 45689999999999999999999999
Q ss_pred HHHHHhhhhCCCCceEEEEcCceEEEEcCccc
Q 043520 102 VATSDTAQLCPFGKENTIGYEECLLRYSNISF 133 (159)
Q Consensus 102 ~a~~~~~~~C~~~~ga~i~~~~C~lRYs~~~F 133 (159)
.|+.+++++||+++||+||+++|+||||+++|
T Consensus 77 ~a~~~~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 77 NLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHTTHHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHHHHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 99999999999999999999999999999998
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00