Citrus Sinensis ID: 043523

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650
Protein Sequence
TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT
Secondary Structure (PSIPRED)
cEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEccccccEEEcccccccccccccEEEccccccEEEEccccccccccccEEEcccccccccccccccccccccccccccccEEEcccccccccccHHHHHHccccccEEEcccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccccccccccccEEEccccEEEEEccccccccccccEEEcccccccccccccccccccccccEEEccccccEEEcccccccccccccEEEccccEEEEcccHHHHHcccccEEEcccccccccccHHHHHcccccEEEccccccEEEccccccccccccccEEEcccccccccccHHHHHHHHHHHHccccccccccEEEEEccccEEEEEEEEEEEccEEEEEccccccccEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHccccccEEEEcccccccccccccccccccEEEEEccccccccccHHHHHHcccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccHHHccccccEEEEcccccccccccHHHHccccccEEEEEccccccccccccccccccEEEEEcccccccccccccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEEcccccccccccHHHHHccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccccHHHccccccEEEEcccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccc
Coil and Loop (DISEMBL)
tldlsecglqgkfpekilqvptletldlsenqllqgslpnfpknsslrnlilsgtgfsgtlpdsignlenlTWVEVRRcnftgpippsmanltqlfhmdfssnhfsghipslhksrnlkyldlsfnnlsggisSTFWEQLVNLNLVLLShnslngsiprslfllpnletlwlsnnqfenqlpeisnvsssvlfdldlsgnrlegpvpISIIFELRnlytldlssnkfSRLRlasskprvipilknqsqlsgldisnnqipgeipnwiwevgngnlnFLNLSHNLLVslqepysissirlldlhsnqlrgniphmstntsyvdysnnhftfipadignfmsETEYFFAANNslvgvipesvckGIYFQVLdlsnnnlsgtipacliaqsetTLGVLnlgrnnlngtlsdtifprncglqildlggnqlqgvvpkslancnMLQVldlknnhisdnfpcwlgnaSSLQVLVLQSnnfsghiscprnnvswplLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLkvpniftsidfssnnfegpipeemGRFKSLYALNMshnaltgsipssfgnlkQIESLDLsmnnlsgkipAQLASLNFLSVLNLSYNnlvgkipt
Flexible Loop (DISEMBL)
tldlsecglqgkfpekilqvPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRlrlasskprvipilknqsqlsgldiSNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLsynnlvgkipt
Low Complexity Region (SEG)
TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQlvnlnlvllshnslnGSIPRSLFLLPNLETLWLSNNQFENQLPEIsnvsssvlfdldlsGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEvgngnlnflnlshnllvslQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSEttlgvlnlgrnnlngtlSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYevgvtvtvkgvetMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQlaslnflsvlnlsynnlVGKIPT
Disordered region (IsUnstruct)
**************EKILQVPTLETLDL******************LRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLAS*KPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG****
Disordered Region (DISOPRED)
TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMM********ELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT
Disordered Region (DISEMBL)
TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT
Disordered Region (DISPRO)
TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	650	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.878	0.674	0.358	4e-79
Q9FL28	1173	LRR receptor-like serine/	no	no	0.947	0.525	0.319	9e-59
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.961	0.500	0.306	7e-57
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.927	0.481	0.313	1e-56
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.927	0.554	0.323	4e-56
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.896	0.489	0.293	2e-52
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.890	0.525	0.320	2e-52
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.861	0.508	0.331	2e-52
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.904	0.517	0.328	2e-50
Q9LP24	1120	Probable leucine-rich rep	no	no	0.941	0.546	0.325	2e-49

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  296 bits (758), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 232/648 (35%), Positives = 325/648 (50%), Gaps = 77/648 (11%)

Query: 9   LQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKN-SSLRNLILSGTGFSGTLPDSIGN 67
           L G+ P  +  +  L  L+L  N+L+ G +P+   +   LRNL L+     G +P S+GN
Sbjct: 170 LTGEIPSSLGNLSRLVNLELFSNRLV-GKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGN 228

Query: 68  LENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFN 126
           L NL  + +      G +P S+ NL +L  M F +N  SG+IP S      L    LS N
Sbjct: 229 LSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSN 288

Query: 127 NLSGGISSTF---WEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPE 183
           N +    STF        NL    +S+NS +G  P+SL L+P+LE+++L  NQF   +  
Sbjct: 289 NFT----STFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEF 344

Query: 184 ISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPIL 243
            +  SS+ L DL L  NRL GP+P SI   L NL  LD+S N F+      + P  I  L
Sbjct: 345 ANTSSSTKLQDLILGRNRLHGPIPESIS-RLLNLEELDISHNNFT-----GAIPPTISKL 398

Query: 244 KNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISS-IRLLDL 302
            N   L  LD+S N + GE+P  +W      LN + LSHN   S +      + I  LDL
Sbjct: 399 VN---LLHLDLSKNNLEGEVPACLWR-----LNTMVLSHNSFSSFENTSQEEALIEELDL 450

Query: 303 HSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCK 362
           +SN                                             S  G IP  +CK
Sbjct: 451 NSN---------------------------------------------SFQGPIPYMICK 465

Query: 363 GIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDL 422
                 LDLSNN  SG+IP+C I     ++  LNLG NN +GTL D IF +   L  LD+
Sbjct: 466 LSSLGFLDLSNNLFSGSIPSC-IRNFSGSIKELNLGDNNFSGTLPD-IFSKATELVSLDV 523

Query: 423 GGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCP 482
             NQL+G  PKSL NC  L+++++++N I D FP WL +  SL VL L+SN F G +   
Sbjct: 524 SHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHR 583

Query: 483 RNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMM-VAETKSGSELKHLRYVISSNQFYE 541
             ++ +  L+I+D++ N FSG L   +    ++M  + E       +  RY  S    Y 
Sbjct: 584 HASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYADS----YY 639

Query: 542 VGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIP 601
             + +  KGV+    ++   F +IDFS N   G IPE +G  K L  LN+S NA T  IP
Sbjct: 640 HEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIP 699

Query: 602 SSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 649
               NL ++E+LD+S N LSG+IP  LA+L+FLS +N S+N L G +P
Sbjct: 700 RFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVP 747

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  228 bits (582), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 230/721 (31%), Positives = 344/721 (47%), Gaps = 105/721 (14%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLP-NFPKNSSLRNLILSGTGFSG 59
           ++ L E  L+G     I  +  L+ LDL+ N    G +P    K + L  LIL    FSG
Sbjct: 76  SVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSF-TGKIPAEIGKLTELNQLILYLNYFSG 134

Query: 60  TLPDSIGNLENLTWVEVRR-----------C-------------NFTGPIPPSMANLTQL 95
           ++P  I  L+N+ ++++R            C             N TG IP  + +L  L
Sbjct: 135 SIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHL 194

Query: 96  FHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLN 154
                + NH +G IP S+    NL  LDLS N L+G I   F   L+NL  ++L+ N L 
Sbjct: 195 QMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFG-NLLNLQSLVLTENLLE 253

Query: 155 GSIPRSLFLLPNLETLWLSNNQFENQLP-EISNV-------------SSSV--------- 191
           G IP  +    +L  L L +NQ   ++P E+ N+             +SS+         
Sbjct: 254 GDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQ 313

Query: 192 LFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSG 251
           L  L LS N L GP+   I F L +L  L L SN F+        P+ I  L+N   L+ 
Sbjct: 314 LTHLGLSENHLVGPISEEIGF-LESLEVLTLHSNNFT-----GEFPQSITNLRN---LTV 364

Query: 252 LDISNNQIPGEIPNWIWEVGNGNLNFLNLS-HNLLVSLQEPYSIS---SIRLLDLHSNQL 307
           L +  N I GE+P  +  +     N  NLS H+ L++   P SIS    ++LLDL  NQ+
Sbjct: 365 LTVGFNNISGELPADLGLL----TNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQM 420

Query: 308 RGNIPHM--STNTSYVDYSNNHFTF-IPADIGNFMSETEYFFAANNSLVGVIPESVCKGI 364
            G IP      N +++    NHFT  IP DI N  S  E    A+N+L G +   + K  
Sbjct: 421 TGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFN-CSNLETLSVADNNLTGTLKPLIGKLQ 479

Query: 365 YFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCG----LQIL 420
             ++L +S N+L+G IP  +    +  L +L L  N   G +     PR       LQ L
Sbjct: 480 KLRILQVSYNSLTGPIPREIGNLKD--LNILYLHSNGFTGRI-----PREMSNLTLLQGL 532

Query: 421 DLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHIS 480
            +  N L+G +P+ + +  +L VLDL NN  S   P       SL  L LQ N F+G I 
Sbjct: 533 RMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSI- 591

Query: 481 CPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMV-----------AETKSGSELKH 529
            P +  S  LL   D++ N  +G +  + L +++ M +              K   +L+ 
Sbjct: 592 -PASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEM 650

Query: 530 LRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGR-FKSLYA 588
           ++ +  SN  +   +  +++  +       N+FT +DFS NN  G IP+E+ +    + +
Sbjct: 651 VQEIDLSNNLFSGSIPRSLQACK-------NVFT-LDFSQNNLSGHIPDEVFQGMDMIIS 702

Query: 589 LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKI 648
           LN+S N+ +G IP SFGN+  + SLDLS NNL+G+IP  LA+L+ L  L L+ NNL G +
Sbjct: 703 LNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHV 762

Query: 649 P 649
           P
Sbjct: 763 P 763

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  222 bits (566), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 225/733 (30%), Positives = 338/733 (46%), Gaps = 108/733 (14%)

Query: 2   LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPN-FPKNSSLRNLILSGTGFSGT 60
           LDLS   L G  P  +  + +LE+L L  NQL  G +P+      ++R+L +      G 
Sbjct: 100 LDLSSNNLVGPIPTALSNLTSLESLFLFSNQL-TGEIPSQLGSLVNIRSLRIGDNELVGD 158

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPS--------- 111
           +P+++GNL NL  + +  C  TGPIP  +  L ++  +    N+  G IP+         
Sbjct: 159 IPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLT 218

Query: 112 ----------------LHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNG 155
                           L +  NL+ L+L+ N+L+G I S   E +  L  + L  N L G
Sbjct: 219 VFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGE-MSQLQYLSLMANQLQG 277

Query: 156 SIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELR 215
            IP+SL  L NL+TL LS N    ++PE    + S L DL L+ N L G +P SI     
Sbjct: 278 LIPKSLADLGNLQTLDLSANNLTGEIPE-EFWNMSQLLDLVLANNHLSGSLPKSICSNNT 336

Query: 216 NLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQ-LSGLDISNNQIPGEIPNWIWEVGN-- 272
           NL  L LS  + S           IP+  ++ Q L  LD+SNN + G IP  ++E+    
Sbjct: 337 NLEQLVLSGTQLSG---------EIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELT 387

Query: 273 --------------------GNLNFLNLSHNLLVSLQEPYSISSIRLLD---LHSNQLRG 309
                                NL +L L HN L   + P  IS++R L+   L+ N+  G
Sbjct: 388 DLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEG-KLPKEISALRKLEVLFLYENRFSG 446

Query: 310 NIPHM---STNTSYVDYSNNHFTF-IPADIGNFMSETEYFFAANNSLVGVIPESVCKGIY 365
            IP      T+   +D   NHF   IP  IG  + E        N LVG +P S+     
Sbjct: 447 EIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGR-LKELNLLHLRQNELVGGLPASLGNCHQ 505

Query: 366 FQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFP-RNCGLQILDLGG 424
             +LDL++N LSG+IP+         L  L L  N+L G L D++   RN  L  ++L  
Sbjct: 506 LNILDLADNQLSGSIPSSF--GFLKGLEQLMLYNNSLQGNLPDSLISLRN--LTRINLSH 561

Query: 425 NQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRN 484
           N+L G +     + + L   D+ NN   D  P  LGN+ +L  L L  N  +G I     
Sbjct: 562 NRLNGTIHPLCGSSSYLS-FDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLG 620

Query: 485 NVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETK---SG---------SELKHLRY 532
            +    L ++D++SN  +G +  + +L  +   +       SG         S+L  L+ 
Sbjct: 621 KIRE--LSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELK- 677

Query: 533 VISSNQFYEVGVTVTVKGVETMLLK---------VPN------IFTSIDFSSNNFEGPIP 577
            +SSNQF E   T      + ++L          +P           ++   N F G +P
Sbjct: 678 -LSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLP 736

Query: 578 EEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIES-LDLSMNNLSGKIPAQLASLNFLSV 636
           + MG+   LY L +S N+LTG IP   G L+ ++S LDLS NN +G IP+ + +L+ L  
Sbjct: 737 QAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLET 796

Query: 637 LNLSYNNLVGKIP 649
           L+LS+N L G++P
Sbjct: 797 LDLSHNQLTGEVP 809

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  221 bits (564), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 221/705 (31%), Positives = 335/705 (47%), Gaps = 102/705 (14%)

Query: 2   LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFS--- 58
           L L+ C L G  P +  ++  L+TL L +N+L +G +P    N +  +L L    F+   
Sbjct: 173 LALASCRLTGLIPSRFGRLVQLQTLILQDNEL-EGPIPAEIGNCT--SLALFAAAFNRLN 229

Query: 59  GTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPS-LHKSRN 117
           G+LP  +  L+NL  + +   +F+G IP  + +L  + +++   N   G IP  L +  N
Sbjct: 230 GSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELAN 289

Query: 118 LKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLL-PNLETLWLSNNQ 176
           L+ LDLS NNL+G I   FW ++  L  ++L+ N L+GS+P+++     +L+ L+LS  Q
Sbjct: 290 LQTLDLSSNNLTGVIHEEFW-RMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQ 348

Query: 177 FENQLP-EISNVSSSVLFDLDLSGNRLEGPVPISI--IFELRNLY--------TLDLSSN 225
              ++P EISN  S  L  LDLS N L G +P S+  + EL NLY        TL  S +
Sbjct: 349 LSGEIPAEISNCQSLKL--LDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSIS 406

Query: 226 KFSRLR--------LASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGN-GNLN 276
             + L+        L    P+ I  L    +L  + +  N+  GE+P    E+GN   L 
Sbjct: 407 NLTNLQEFTLYHNNLEGKVPKEIGFL---GKLEIMYLYENRFSGEMP---VEIGNCTRLQ 460

Query: 277 FLNLSHNLLVSLQEPYSISSIR---LLDLHSNQLRGNIPHMSTNT---SYVDYSNNHFT- 329
            ++   N L S + P SI  ++    L L  N+L GNIP    N    + +D ++N  + 
Sbjct: 461 EIDWYGNRL-SGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSG 519

Query: 330 FIPADIGNFMSETEYFFAANNSLVGVIPESV-----------------------CKGIYF 366
            IP+  G F++  E F   NNSL G +P+S+                       C    +
Sbjct: 520 SIPSSFG-FLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSY 578

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
              D++ N   G IP  L     T L  L LG+N   G +  T F +   L +LD+  N 
Sbjct: 579 LSFDVTENGFEGDIP--LELGKSTNLDRLRLGKNQFTGRIPRT-FGKISELSLLDISRNS 635

Query: 427 LQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNV 486
           L G++P  L  C  L  +DL NN++S   P WLG    L  L L SN F G  S P    
Sbjct: 636 LSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVG--SLPTEIF 693

Query: 487 SWPLLQIVDLASNKFSGRLSQKW--LLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGV 544
           S   +  + L  N  +G + Q+   L  +  + + E +    L                 
Sbjct: 694 SLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLP---------------- 737

Query: 545 TVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLY-ALNMSHNALTGSIPSS 603
                   + + K+  +F  +  S N   G IP E+G+ + L  AL++S+N  TG IPS+
Sbjct: 738 --------STIGKLSKLF-ELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPST 788

Query: 604 FGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKI 648
              L ++ESLDLS N L G++P Q+  +  L  LNLSYNNL GK+
Sbjct: 789 ISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL 833

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  219 bits (559), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 214/661 (32%), Positives = 325/661 (49%), Gaps = 58/661 (8%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKN-SSLRNLILSGTGFSG 59
           TL+LS  GL G+   +I ++ +L TLDLS N    G LP+   N +SL  L LS   FSG
Sbjct: 80  TLNLSASGLSGQLGSEIGELKSLVTLDLSLNSF-SGLLPSTLGNCTSLEYLDLSNNDFSG 138

Query: 60  TLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPS-LHKSRNL 118
            +PD  G+L+NLT++ + R N +G IP S+  L +L  +  S N+ SG IP  L     L
Sbjct: 139 EVPDIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNLSGTIPELLGNCSKL 198

Query: 119 KYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFE 178
           +YL L+ N L+G + ++ +  L NL  + +S+NSL G +         L +L LS N F+
Sbjct: 199 EYLALNNNKLNGSLPASLY-LLENLGELFVSNNSLGGRLHFGSSNCKKLVSLDLSFNDFQ 257

Query: 179 NQL-PEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKP 237
             + PEI N SS  L  L +    L G +P S+   LR +  +DLS N     RL+ + P
Sbjct: 258 GGVPPEIGNCSS--LHSLVMVKCNLTGTIPSSMGM-LRKVSVIDLSDN-----RLSGNIP 309

Query: 238 RVIPILKNQSQLSGLDISNNQIPGEIP---NWIWEVGNGNLNFLNLSHNLLVSLQEPYSI 294
           +    L N S L  L +++NQ+ GEIP   + + ++ +  L F  LS  + + +   + I
Sbjct: 310 QE---LGNCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGEIPIGI---WKI 363

Query: 295 SSIRLLDLHSNQLRGNIPHMSTNTSYVD----YSNNHFTFIPADIGNFMSETEYFFAANN 350
            S+  + +++N L G +P   T   ++     ++N  +  IP  +G   S  E     N 
Sbjct: 364 QSLTQMLVYNNTLTGELPVEVTQLKHLKKLTLFNNGFYGDIPMSLGLNRSLEEVDLLGNR 423

Query: 351 SLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTI 410
              G IP  +C G   ++  L +N L G IPA +  +   TL  + L  N L+G L +  
Sbjct: 424 -FTGEIPPHLCHGQKLRLFILGSNQLHGKIPASI--RQCKTLERVRLEDNKLSGVLPE-- 478

Query: 411 FPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL 470
           FP +  L  ++LG N  +G +P+SL +C  L  +DL  N ++   P  LGN  SL +L L
Sbjct: 479 FPESLSLSYVNLGSNSFEGSIPRSLGSCKNLLTIDLSQNKLTGLIPPELGNLQSLGLLNL 538

Query: 471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHL 530
             N   G +  P        L   D+ SN  +G +   +            +S   L  L
Sbjct: 539 SHNYLEGPL--PSQLSGCARLLYFDVGSNSLNGSIPSSF------------RSWKSLSTL 584

Query: 531 RYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSL-YAL 589
             V+S N F          G     L   +  + +  + N F G IP  +G  KSL Y L
Sbjct: 585 --VLSDNNFL---------GAIPQFLAELDRLSDLRIARNAFGGKIPSSVGLLKSLRYGL 633

Query: 590 NMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 649
           ++S N  TG IP++ G L  +E L++S N L+G +   L SL  L+ +++SYN   G IP
Sbjct: 634 DLSANVFTGEIPTTLGALINLERLNISNNKLTGPLSV-LQSLKSLNQVDVSYNQFTGPIP 692

Query: 650 T 650
            
Sbjct: 693 V 693

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  207 bits (527), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 210/715 (29%), Positives = 307/715 (42%), Gaps = 132/715 (18%)

Query: 2   LDLSECGLQGKFPEKI-LQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
           LDLS+    G  P    + +P L +LD+S N L     P   K S+L NL +    FSG 
Sbjct: 142 LDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQ 201

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPS--------- 111
           +P  IGN+  L       C F GP+P  ++ L  L  +D S N     IP          
Sbjct: 202 IPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLS 261

Query: 112 ----------------LHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNG 155
                           L   ++LK L LSFN+LSG +     E  + L       N L+G
Sbjct: 262 ILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLELSE--IPLLTFSAERNQLSG 319

Query: 156 SIPRSLFLLPNLETLWLSNNQFENQLP-EISNVSSSVLFDLDLSGNRLEGPVPISIIFEL 214
           S+P  +     L++L L+NN+F  ++P EI +    +L  L L+ N L G +P  +    
Sbjct: 320 SLPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCP--MLKHLSLASNLLSGSIPRELCGS- 376

Query: 215 RNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGN 274
            +L  +DLS N  S          +  +    S L  L ++NNQI G IP  +W++    
Sbjct: 377 GSLEAIDLSGNLLSG--------TIEEVFDGCSSLGELLLTNNQINGSIPEDLWKL---- 424

Query: 275 LNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPH---MSTNTSYVDYSNNHFT-F 330
                                 +  LDL SN   G IP     STN      S N    +
Sbjct: 425 ---------------------PLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGY 463

Query: 331 IPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSET 390
           +PA+IGN  S  +    ++N L G IP  + K     VL+L+ N   G IP  L     T
Sbjct: 464 LPAEIGNAAS-LKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVEL--GDCT 520

Query: 391 TLGVLNLGRNNLNGTLSDTI--------------------------------FPRNCGLQ 418
           +L  L+LG NNL G + D I                                 P    LQ
Sbjct: 521 SLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQ 580

Query: 419 ---ILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNF 475
              I DL  N+L G +P+ L  C +L  + L NNH+S   P  L   ++L +L L  N  
Sbjct: 581 HHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNAL 640

Query: 476 SGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVIS 535
           +G I  P+   +   LQ ++LA+N+ +G + + + L    + +  TK+            
Sbjct: 641 TGSI--PKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNK----------- 687

Query: 536 SNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNA 595
                +  V  ++  ++ +        T +D S NN  G +  E+   + L  L +  N 
Sbjct: 688 ----LDGPVPASLGNLKEL--------THMDLSFNNLSGELSSELSTMEKLVGLYIEQNK 735

Query: 596 LTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT 650
            TG IPS  GNL Q+E LD+S N LSG+IP ++  L  L  LNL+ NNL G++P+
Sbjct: 736 FTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPS 790

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  207 bits (527), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 211/659 (32%), Positives = 313/659 (47%), Gaps = 80/659 (12%)

Query: 2   LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLP-NFPKNSSLRNLILSGTGFSGT 60
           L++S   + G  P+ +    +LE LDL  N+   G +P       +L+ L L      G+
Sbjct: 96  LNVSTNFISGPIPQDLSLCRSLEVLDLCTNRF-HGVIPIQLTMIITLKKLYLCENYLFGS 154

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPS-LHKSRNLK 119
           +P  IGNL +L  + +   N TG IPPSMA L QL  +    N FSG IPS +    +LK
Sbjct: 155 IPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLK 214

Query: 120 YLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFEN 179
            L L+ N L G +     E+L NL  ++L  N L+G IP S+  +  LE L L  N F  
Sbjct: 215 VLGLAENLLEGSLPKQL-EKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTG 273

Query: 180 QLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRV 239
            +P                         I  + +++ LY   L +N+     L    PR 
Sbjct: 274 SIPR-----------------------EIGKLTKMKRLY---LYTNQ-----LTGEIPRE 302

Query: 240 IPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSL--QEPYSISSI 297
           I  L + +++   D S NQ+ G IP     + N  L  L+L  N+L+    +E   ++ +
Sbjct: 303 IGNLIDAAEI---DFSENQLTGFIPKEFGHILN--LKLLHLFENILLGPIPRELGELTLL 357

Query: 298 RLLDLHSNQLRGNIPHMSTNTSY-VD---YSNNHFTFIPADIGNFMSETEYFFAANNSLV 353
             LDL  N+L G IP       Y VD   + N     IP  IG F S       + NSL 
Sbjct: 358 EKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIG-FYSNFSVLDMSANSLS 416

Query: 354 GVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPR 413
           G IP   C+     +L L +N LSG IP  L  ++  +L  L LG N L G+L   +F  
Sbjct: 417 GPIPAHFCRFQTLILLSLGSNKLSGNIPRDL--KTCKSLTKLMLGDNQLTGSLPIELFNL 474

Query: 414 NCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSN 473
              L  L+L  N L G +   L     L+ L L NN+ +   P  +GN + +    + SN
Sbjct: 475 Q-NLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSN 533

Query: 474 NFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKW--LLTMEEMMVAETKSGSELKHLR 531
             +GHI  P+   S   +Q +DL+ NKFSG ++Q+   L+ +E + +++ +   E+ H  
Sbjct: 534 QLTGHI--PKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPH-- 589

Query: 532 YVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSL-YALN 590
                  F ++          T L++       +    N     IP E+G+  SL  +LN
Sbjct: 590 ------SFGDL----------TRLME-------LQLGGNLLSENIPVELGKLTSLQISLN 626

Query: 591 MSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 649
           +SHN L+G+IP S GNL+ +E L L+ N LSG+IPA + +L  L + N+S NNLVG +P
Sbjct: 627 ISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVP 685

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  207 bits (527), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 225/678 (33%), Positives = 313/678 (46%), Gaps = 118/678 (17%)

Query: 2   LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLP-NFPKNSSLRNLILSGTGFSGT 60
           LDLS  GL GK P++I    +LE L L+ NQ   G +P    K  SL NLI+     SG+
Sbjct: 102 LDLSYNGLSGKIPKEIGNCSSLEILKLNNNQF-DGEIPVEIGKLVSLENLIIYNNRISGS 160

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
           LP  IGNL +L+ +     N +G +P S+ NL +L       N  SG +PS         
Sbjct: 161 LPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPS--------- 211

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
                  + G       E LV L L   + N L+G +P+ + +L  L  + L  N+F   
Sbjct: 212 ------EIGG------CESLVMLGL---AQNQLSGELPKEIGMLKKLSQVILWENEFSGF 256

Query: 181 LP-EISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRV 239
           +P EISN +S  L  L L  N+L GP+P     EL +L +L+       R  L  + PR 
Sbjct: 257 IPREISNCTS--LETLALYKNQLVGPIPK----ELGDLQSLEFL--YLYRNGLNGTIPRE 308

Query: 240 IPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRL 299
           I    N S    +D S N + GEIP    E+GN                     I  + L
Sbjct: 309 I---GNLSYAIEIDFSENALTGEIP---LELGN---------------------IEGLEL 341

Query: 300 LDLHSNQLRGNIP-HMST--NTSYVDYSNNHFTFIPADIG-NFMSETEYFFAANNSLVGV 355
           L L  NQL G IP  +ST  N S +D S N  T  P  +G  ++          NSL G 
Sbjct: 342 LYLFENQLTGTIPVELSTLKNLSKLDLSINALTG-PIPLGFQYLRGLFMLQLFQNSLSGT 400

Query: 356 IPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTI----- 410
           IP  +       VLD+S+N+LSG IP+ L   S     +LNLG NNL+G +   I     
Sbjct: 401 IPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMI--ILNLGTNNLSGNIPTGITTCKT 458

Query: 411 --------------FPRNCGLQI----LDLGGNQLQGVVPKSLANCNMLQVLDLKNNHIS 452
                         FP N   Q+    ++LG N+ +G +P+ + NC+ LQ L L +N  +
Sbjct: 459 LVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFT 518

Query: 453 DNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLT 512
              P  +G  S L  L + SN  +G +  P    +  +LQ +D+  N FSG L       
Sbjct: 519 GELPREIGMLSQLGTLNISSNKLTGEV--PSEIFNCKMLQRLDMCCNNFSGTLP------ 570

Query: 513 MEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNF 572
                 +E  S  +L+ L+  +S+N          + G   + L   +  T +    N F
Sbjct: 571 ------SEVGSLYQLELLK--LSNNN---------LSGTIPVALGNLSRLTELQMGGNLF 613

Query: 573 EGPIPEEMGRFKSL-YALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL 631
            G IP E+G    L  ALN+S+N LTG IP    NL  +E L L+ NNLSG+IP+  A+L
Sbjct: 614 NGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANL 673

Query: 632 NFLSVLNLSYNNLVGKIP 649
           + L   N SYN+L G IP
Sbjct: 674 SSLLGYNFSYNSLTGPIP 691

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  200 bits (509), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 208/634 (32%), Positives = 311/634 (49%), Gaps = 46/634 (7%)

Query: 47  LRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFS 106
           LR L L    F+GT+P S+     L  V ++  + +G +PP+M NLT L   + + N  S
Sbjct: 94  LRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNVAGNRLS 153

Query: 107 GHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPN 166
           G IP +    +L++LD+S N  SG I S     L  L L+ LS+N L G IP SL  L +
Sbjct: 154 GEIP-VGLPSSLQFLDISSNTFSGQIPSGL-ANLTQLQLLNLSYNQLTGEIPASLGNLQS 211

Query: 167 LETLWLSNNQFENQLP-EISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSN 225
           L+ LWL  N  +  LP  ISN SS  L  L  S N + G +P +    L  L  L LS+N
Sbjct: 212 LQYLWLDFNLLQGTLPSAISNCSS--LVHLSASENEIGGVIPAAY-GALPKLEVLSLSNN 268

Query: 226 KFS----------------RLRLASSKPRVIP--ILKNQSQLSGLDISNNQIPGEIPNWI 267
            FS                +L   +    V P      ++ L  LD+  N+I G  P W+
Sbjct: 269 NFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTANCRTGLQVLDLQENRISGRFPLWL 328

Query: 268 WEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLD---LHSNQLRGNIP---HMSTNTSYV 321
             + +  L  L++S NL  S + P  I +++ L+   L +N L G IP       +   +
Sbjct: 329 TNILS--LKNLDVSGNLF-SGEIPPDIGNLKRLEELKLANNSLTGEIPVEIKQCGSLDVL 385

Query: 322 DYSNNHFTF-IPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTI 380
           D+  N     IP  +G +M   +      NS  G +P S+      + L+L  NNL+G+ 
Sbjct: 386 DFEGNSLKGQIPEFLG-YMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSF 444

Query: 381 PACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNM 440
           P  L+A   T+L  L+L  N  +G +  +I      L  L+L GN   G +P S+ N   
Sbjct: 445 PVELMAL--TSLSELDLSGNRFSGAVPVSI-SNLSNLSFLNLSGNGFSGEIPASVGNLFK 501

Query: 441 LQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNK 500
           L  LDL   ++S   P  L    ++QV+ LQ NNFSG +  P    S   L+ V+L+SN 
Sbjct: 502 LTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVV--PEGFSSLVSLRYVNLSSNS 559

Query: 501 FSGRLSQKWLLTMEEMMVAETK---SGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLK 557
           FSG + Q +      + ++ +    SGS    +    S+ +  E+     +  +   L +
Sbjct: 560 FSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNC-SALEVLELRSNRLMGHIPADLSR 618

Query: 558 VPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSM 617
           +P +   +D   NN  G IP E+ +  SL +L++ HN L+G IP SF  L  +  +DLS+
Sbjct: 619 LPRL-KVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSV 677

Query: 618 NNLSGKIPAQLASLNF-LSVLNLSYNNLVGKIPT 650
           NNL+G+IPA LA ++  L   N+S NNL G+IP 
Sbjct: 678 NNLTGEIPASLALISSNLVYFNVSSNNLKGEIPA 711

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  197 bits (501), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 220/675 (32%), Positives = 325/675 (48%), Gaps = 63/675 (9%)

Query: 2   LDLSECGLQGKFPE-KILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLI---LSGTGF 57
           L+L+  G++G F +   + +  L  +DLS N LL G++P  P+  +L  LI   LS    
Sbjct: 82  LNLTNTGIEGTFQDFPFISLSNLAYVDLSMN-LLSGTIP--PQFGNLSKLIYFDLSTNHL 138

Query: 58  SGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPS-LHKSR 116
           +G +  S+GNL+NLT + + +   T  IP  + N+  +  +  S N  +G IPS L   +
Sbjct: 139 TGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLK 198

Query: 117 NLKYLDLSFNNLSGGISSTF--WEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSN 174
           NL  L L  N L+G I       E + +L    LS N L GSIP +L  L NL  L+L  
Sbjct: 199 NLMVLYLYENYLTGVIPPELGNMESMTDL---ALSQNKLTGSIPSTLGNLKNLMVLYLYE 255

Query: 175 NQFENQLP-EISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLA 233
           N     +P EI N+ S  + +L LS N+L G +P S+   L+NL  L L  N  +     
Sbjct: 256 NYLTGVIPPEIGNMES--MTNLALSQNKLTGSIPSSL-GNLKNLTLLSLFQNYLTG---- 308

Query: 234 SSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGN-GNLNFLNLSHNLLVSLQEPY 292
                + P L N   +  L++SNN++ G IP+    +GN  NL  L L  N L  +  P 
Sbjct: 309 ----GIPPKLGNIESMIDLELSNNKLTGSIPS---SLGNLKNLTILYLYENYLTGVIPPE 361

Query: 293 --SISSIRLLDLHSNQLRGNIP----HMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFF 346
             ++ S+  L L++N+L G+IP    ++   T    Y N     IP ++GN  S      
Sbjct: 362 LGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDL 421

Query: 347 AANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTL 406
           +  N L G +P+S       + L L  N+LSG IP  +   S  T   L L  NN  G  
Sbjct: 422 S-QNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSHLT--TLILDTNNFTGFF 478

Query: 407 SDTIFPRNCGLQILDLGGNQLQGVVPKSLANC-NMLQVLDLKNNHISDNFPCWLGNASSL 465
            +T+  +   LQ + L  N L+G +PKSL +C ++++   L N    D F  + G    L
Sbjct: 479 PETVC-KGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAF-GIYPDL 536

Query: 466 QVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRL-SQKWLLT-MEEMMVAETKS 523
             +    N F G IS   N    P L  + +++N  +G + ++ W +T + E+ ++    
Sbjct: 537 NFIDFSHNKFHGEISS--NWEKSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNL 594

Query: 524 GSELKHL--------RYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGP 575
             EL           R  ++ NQ         + G     L       S+D SSNNF   
Sbjct: 595 FGELPEAIGNLTNLSRLRLNGNQ---------LSGRVPAGLSFLTNLESLDLSSNNFSSE 645

Query: 576 IPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLS 635
           IP+    F  L+ +N+S N   GSIP     L Q+  LDLS N L G+IP+QL+SL  L 
Sbjct: 646 IPQTFDSFLKLHDMNLSRNKFDGSIPR-LSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLD 704

Query: 636 VLNLSYNNLVGKIPT 650
            L+LS+NNL G IPT
Sbjct: 705 KLDLSHNNLSGLIPT 719

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	650
359481300	1054	PREDICTED: leucine-rich repeat receptor	0.990	0.611	0.540	0.0
224139184	1032	predicted protein [Populus trichocarpa]	0.989	0.623	0.541	0.0
359481304	1057	PREDICTED: LRR receptor-like serine/thre	0.993	0.611	0.528	0.0
214011438	1128	GbVe [Gossypium barbadense]	0.989	0.570	0.505	1e-172
255579302	1060	serine/threonine-protein kinase bri1, pu	0.993	0.609	0.508	1e-168
37956237	1051	resistance protein SlVe1 precursor [Sola	0.995	0.615	0.482	1e-165
315436722	1077	verticillium wilt resistance-like protei	0.992	0.598	0.489	1e-162
14279670	1053	verticillium wilt disease resistance pro	0.995	0.614	0.482	1e-157
237899595	1053	verticillium wilt disease resistance pro	0.995	0.614	0.482	1e-157
147806063	1032	hypothetical protein VITISV_032508 [Viti	0.955	0.601	0.481	1e-157

>gi|359481300|ref|XP_002269481.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/696 (54%), Positives = 463/696 (66%), Gaps = 52/696 (7%)

Query: 2   LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTL 61
           L LS CGL G FPEKI QVPTL+TLDLS N+LLQGSLP FP+   L  L+LS T FSG L
Sbjct: 252 LQLSSCGLYGTFPEKIFQVPTLQTLDLSYNKLLQGSLPEFPQGGCLETLVLSVTKFSGKL 311

Query: 62  PDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYL 121
           P+SI NL+ L  +E+  C+F+GPIP  MANLTQL ++DFS N FSG IPS   S+NL  +
Sbjct: 312 PNSIANLKRLARIELADCDFSGPIPTVMANLTQLVYLDFSHNKFSGAIPSFSLSKNLTLI 371

Query: 122 DLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQL 181
           DLS NNL+G ISS+ W   VNL  +   +NSL GS+P  LF LP+L+ + L+NNQF    
Sbjct: 372 DLSHNNLTGQISSSHWVGFVNLVTIDFCYNSLYGSLPMPLFSLPSLQKIKLNNNQFSGPF 431

Query: 182 PEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKF-------------- 227
            E    SS  +  LDLSGN LEGP+P+S +F+L++L  LDLSSNKF              
Sbjct: 432 GEFPATSSHPMDTLDLSGNNLEGPIPVS-LFDLQHLNILDLSSNKFNGTVELSQFQKLGN 490

Query: 228 ----------------------------SRLRLASSKPRVIPILKNQSQLSGLDISNNQI 259
                                       S L+LAS K R +P L +QS L  LD+S NQI
Sbjct: 491 LTTLSLSYNNLSINPSRSNPTSPLLPILSTLKLASCKLRTLPDLSSQSMLVILDLSQNQI 550

Query: 260 PGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYS--ISSIRLLDLHSNQLRGNIPHMSTN 317
           PG+IPNWIW++GNG L+ LNLSHNLL  LQEP S     +  LDLHSNQLRG IP   ++
Sbjct: 551 PGKIPNWIWKIGNGFLSHLNLSHNLLEGLQEPLSNLPPFLSTLDLHSNQLRGPIPTPPSS 610

Query: 318 TSYVDYSNNHFT-FIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNL 376
           T YVDYSNN FT  IP DIG +M+ T +F  + N++ G+IP S+C   Y QVLD S+N+L
Sbjct: 611 T-YVDYSNNRFTSSIPDDIGTYMNVTVFFSLSKNNITGIIPASICNAHYLQVLDFSDNSL 669

Query: 377 SGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLA 436
           SG IP+CLI   +  L VLNL RN   GT+    FP +C LQ LDL GN L+G +P+SLA
Sbjct: 670 SGKIPSCLIENGD--LAVLNLRRNKFKGTIPGE-FPGHCLLQTLDLNGNLLEGKIPESLA 726

Query: 437 NCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDL 496
           NC  L+VL+L NN ++D FPCWL N SSL+VLVL++N F G I CP +N +WP+LQIVDL
Sbjct: 727 NCKALEVLNLGNNRMNDIFPCWLKNISSLRVLVLRANKFHGPIGCPNSNSTWPMLQIVDL 786

Query: 497 ASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVI--SSNQFYEVGVTVTVKGVETM 554
           A N FSG L +K       MM  E    S+  HLR+ +   S  +Y+  VTVT KG E  
Sbjct: 787 AWNNFSGVLPEKCFSNWRAMMAGEDDVQSKSNHLRFKVLAFSQLYYQDAVTVTSKGQEME 846

Query: 555 LLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLD 614
           L+KV  +FTSIDFS NNF+G IPE++G  K LY LN+S N  TG IPSS G L+Q+ESLD
Sbjct: 847 LVKVLTLFTSIDFSCNNFQGDIPEDIGDLKLLYVLNLSGNGFTGQIPSSLGQLRQLESLD 906

Query: 615 LSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT 650
           LS+N LSG+IPAQL+SLNFLSVLNLS+N LVG+IPT
Sbjct: 907 LSLNKLSGEIPAQLSSLNFLSVLNLSFNGLVGRIPT 942

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139184|ref|XP_002323001.1| predicted protein [Populus trichocarpa] gi|222867631|gb|EEF04762.1| predicted protein [Populus trichocarpa]

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/695 (54%), Positives = 470/695 (67%), Gaps = 52/695 (7%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            L LS C L G FP+ I QVPTLE LDL  N+ LQGS P F +N SLR L+LS T FSGT
Sbjct: 259 ALQLSSCQLNGIFPQAIFQVPTLEILDLQYNKFLQGSFPEFHQNLSLRTLLLSNTNFSGT 318

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
           LP SIG L+ L+ +E+   NFTGPIP SMANLTQLF++D  SN F+G +PS  KS+NL Y
Sbjct: 319 LPQSIGELQKLSRIELAGNNFTGPIPNSMANLTQLFYLDLLSNKFTGTLPSFRKSKNLTY 378

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           +D+S N L G I S  WE L +L  V L +N+ NGSIP SLF +P+L+ + LSNN+F  Q
Sbjct: 379 VDVSHNQLKGEIPSGHWEGLRSLTYVDLGYNAFNGSIPSSLFAIPSLQKIQLSNNRFGGQ 438

Query: 181 LPEISNVSSSVLFDLDLSGNRLEGPVPISI------------------------IFELRN 216
           +PE  NVSSS+L  LDLS N+LEGP+P S+                        I +L N
Sbjct: 439 IPEFPNVSSSLLDTLDLSSNKLEGPIPSSVFGLAKLNVLELSSNMLNDTLQLHWIQKLPN 498

Query: 217 LYTLDLSSN-----------------KFSRLRLASSKPRVIPILKNQSQLSGLDISNNQI 259
           L TL LS N                 +  +LRLAS    + P L+NQS+L  LD+S+NQI
Sbjct: 499 LTTLGLSYNNLTVKSSGGNSNMSSLPQIKKLRLASCDLGMFPDLRNQSKLFHLDLSDNQI 558

Query: 260 PGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTS 319
            G +P WI E+    L +LNLS NLLV L+ P S+  + +LDLH NQL+G+IP   +  +
Sbjct: 559 TGPVPGWISELIL--LQYLNLSRNLLVDLERPLSLPGLSILDLHHNQLQGSIPVPPSYIT 616

Query: 320 YVDYSNNHFT-FIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSG 378
           YVDYS+N F+ FIP +IGN+ + T +F  +NN L G IP+S+C   + QVLDLSNN+LSG
Sbjct: 617 YVDYSSNKFSSFIPPNIGNYFNFTLFFSLSNNHLTGEIPQSICNTEWLQVLDLSNNSLSG 676

Query: 379 TIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANC 438
            IP+CLI + +T L VLNL RNN +G + D  FPR+C L+ LDL GN LQG VPKSLANC
Sbjct: 677 AIPSCLIDKIKT-LRVLNLRRNNFDGIIPDK-FPRSCELKTLDLSGNNLQGQVPKSLANC 734

Query: 439 NMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLAS 498
            ML+VLDL NN I+D+FPC L + SS +VLVL++N FSGHI CP+   +WP LQIVDLA 
Sbjct: 735 TMLEVLDLGNNQINDSFPCLLKSISSFRVLVLRNNMFSGHIGCPQIEGTWPRLQIVDLAF 794

Query: 499 NKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRY---VISSNQFYEVGVTVTVKGVETML 555
           N F G LS   L T E MM    +S   L H+RY    +++  +Y+  +TVTVKG+E  L
Sbjct: 795 NHFIGNLSDICLKTWEGMMEGGNRS---LDHIRYDPLQLTNGLYYQDSITVTVKGLELEL 851

Query: 556 LKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDL 615
           +K+  +FTS DFSSNNFEGPIP+ +G+F +LY LN+SHN LTG IPSS GNL Q+ESLDL
Sbjct: 852 VKILTVFTSADFSSNNFEGPIPDAIGKFNALYVLNLSHNVLTGQIPSSLGNLSQLESLDL 911

Query: 616 SMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT 650
           S N LSG+IPAQL SL FLSVLNLSYN LVG+IPT
Sbjct: 912 SSNQLSGQIPAQLTSLTFLSVLNLSYNRLVGRIPT 946

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481304|ref|XP_002270356.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/698 (52%), Positives = 459/698 (65%), Gaps = 52/698 (7%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
           +L LS C L G FPE I QVP L+ LDLS NQLL G+LP FP+  SLR L+LS T FSG 
Sbjct: 252 SLSLSFCRLYGTFPENIFQVPALQILDLSNNQLLWGALPEFPQGGSLRTLVLSDTKFSGH 311

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
           +PDSIG LE L+W+E+ RCNF+GPIP S+ANLT+L ++D SSN F+G IPS   S+NL +
Sbjct: 312 MPDSIGKLEMLSWIELARCNFSGPIPSSIANLTRLLYLDLSSNGFTGSIPSFRSSKNLTH 371

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           ++LS N  +G I S  WE  +NL  + L  N L+G +P SLF  P+L+ + L+ NQF  Q
Sbjct: 372 INLSRNYFTGQIISHHWEGFLNLLNLDLHQNLLHGDLPLSLFSHPSLQKIQLNQNQFSGQ 431

Query: 181 LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELR------------------------- 215
           L E S VSS VL  LDLS N L+G +P+S +F+LR                         
Sbjct: 432 LNEFSVVSSFVLEVLDLSSNNLQGSIPLS-VFDLRALRVLELSFNNVSGTLELSKFQELG 490

Query: 216 NLYTLDLSSNK-----------------FSRLRLASSKPRVIPILKNQSQLSG-LDISNN 257
           NL TL LS NK                 F+ L+LAS   +  P L+N S+  G LD+S N
Sbjct: 491 NLTTLSLSHNKLSINVDSFNSSFSKSPHFTTLKLASCNLKRFPDLRNNSKFLGYLDLSQN 550

Query: 258 QIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYS--ISSIRLLDLHSNQLRGNIPHMS 315
           QI GEIP+WIW +GN  L  LNLSHNLLV LQEP+      +  LDLHSN LRG IP   
Sbjct: 551 QIQGEIPHWIWMIGNSFLVHLNLSHNLLVDLQEPFPNLPPYLFTLDLHSNLLRGRIPTPP 610

Query: 316 TNTSYVDYSNNHF-TFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNN 374
             +SYVDYSNN F + IP DIG+++S   +F  + N++ G+IPES+C     QVLDLS+N
Sbjct: 611 QFSSYVDYSNNSFISSIPEDIGSYISYVIFFSLSKNNISGIIPESICNATNVQVLDLSDN 670

Query: 375 NLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKS 434
            LSG IP+CLI      L VLNL RN  +GT+S   FP NC L  LDL GN L+G +P+S
Sbjct: 671 ALSGEIPSCLIENE--ALAVLNLRRNMFSGTISGN-FPGNCILHTLDLNGNLLEGTIPES 727

Query: 435 LANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIV 494
           +ANC  L+VL+L NN I D FPCWL N SSL+VLVL++N F G I CP +N +WP+LQIV
Sbjct: 728 VANCKELEVLNLGNNRIDDKFPCWLKNMSSLRVLVLRANRFHGPIGCPNSNSTWPMLQIV 787

Query: 495 DLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVI--SSNQFYEVGVTVTVKGVE 552
           DLA N FSG+L  K  LT + MM +E +  S+L H+++ I   S  +Y+  VTVT KG E
Sbjct: 788 DLAYNNFSGKLPAKGFLTWKAMMASEDEVQSKLNHIQFKILEFSELYYQDAVTVTSKGQE 847

Query: 553 TMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIES 612
             L+KV  +FTSIDFSSN FEG IPEEMG F SLY LN+S N  TG IPSS G L+Q+ES
Sbjct: 848 MELVKVLTLFTSIDFSSNKFEGQIPEEMGNFISLYVLNLSGNGFTGQIPSSMGQLRQLES 907

Query: 613 LDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT 650
           LDLS N+LSGKIP +L SL FLSVL+LS+N LVG IP+
Sbjct: 908 LDLSRNHLSGKIPTELVSLTFLSVLDLSFNQLVGAIPS 945

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|214011438|gb|ACJ61469.1| GbVe [Gossypium barbadense]

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 352/697 (50%), Positives = 463/697 (66%), Gaps = 54/697 (7%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
           +L LS  GL+G  P ++L++PTL+ LDLS N+LL+GS   FP N SL+ L LSGT F G 
Sbjct: 260 SLHLSTSGLRGGLPAEVLKIPTLQILDLSNNELLEGSFQEFPSNGSLQTLTLSGTKFGGQ 319

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
           +PDSIGNL  LT +E+  CNF+GPIP ++  LTQL ++DFSSN FSG IPS   SRNL  
Sbjct: 320 VPDSIGNLGQLTRIELASCNFSGPIPKAVKKLTQLVYLDFSSNSFSGPIPSFSSSRNLTQ 379

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           L+L++N L+G I ST W  L NL  + L +N L+G+IP +LF +P+L+ + LS N+F   
Sbjct: 380 LNLAYNRLNGTIHSTDWSVLSNLVSIDLRNNKLSGTIPPTLFGIPSLQKISLSQNRFNGS 439

Query: 181 LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFS------------ 228
           L ++   ++ +L  LDLS N L+G  P+  +FEL+ L  L +SSNKFS            
Sbjct: 440 LGDLRGKTTLLLDTLDLSSNMLQGQFPM-FVFELQGLKILTISSNKFSGFIQWTDIQKLR 498

Query: 229 ------------------------------RLRLASSKPRVIP-ILKNQSQLSGLDISNN 257
                                          L+LAS   +  P  LK Q +L+ LD+S N
Sbjct: 499 NLSNLDLSYNNLSIDATSTNSALSTFPNITTLKLASCNLKKFPGFLKTQVKLNHLDLSKN 558

Query: 258 QIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPY-SI-SSIRLLDLHSNQLRGNIPHMS 315
           Q+ GEIPNW+WE+   NL +LNLS N L+  + P+ SI S++ ++DLH NQL+G I  + 
Sbjct: 559 QMSGEIPNWVWEI--KNLAYLNLSQNSLMKFEGPFLSITSTLTVVDLHGNQLQGQIDRLP 616

Query: 316 TNTSYVDYSNNHF-TFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNN 374
              +Y+DYS N+F + +P DIG+F+    +F  ++N+  G IPES+CK  Y QVLDLSNN
Sbjct: 617 QYATYLDYSRNNFSSVLPRDIGDFLQFAYFFSISDNNFHGSIPESICKSSYLQVLDLSNN 676

Query: 375 NLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKS 434
           +LSG+IP CLI Q   +LGVLNL RNNL G +SDT FP NC LQ L L  N L+G VPKS
Sbjct: 677 SLSGSIPECLI-QMSVSLGVLNLRRNNLTGNISDT-FPENCLLQTLVLNRNLLRGKVPKS 734

Query: 435 LANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIV 494
           L +C ML+VLDL NN I+D FPC L N SSL+VLVL+ N F+G++ C   +  WP+LQIV
Sbjct: 735 LVSCKMLEVLDLGNNQINDTFPCHLKNISSLRVLVLRGNKFNGNVHCSERS-PWPMLQIV 793

Query: 495 DLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRY-VISSNQF-YEVGVTVTVKGVE 552
           DL+SN FSGRL +  L T + M  AE+++ SEL HL++ V+  NQF Y+  +TVT+KG+E
Sbjct: 794 DLSSNSFSGRLHEACLSTWKAMRAAESETLSELNHLQFKVLKLNQFYYQDAITVTMKGLE 853

Query: 553 TMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIES 612
             LLK+  +FTSID S NNFEGPIPE +G FK+LY LN SHNA TGSIP S GNL Q+ES
Sbjct: 854 LELLKILTVFTSIDISRNNFEGPIPEVIGTFKALYVLNFSHNAFTGSIPPSLGNLSQLES 913

Query: 613 LDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 649
           LDLS N+  G+IP QLA+LNF+S LN+S N L G+IP
Sbjct: 914 LDLSSNSFDGEIPIQLANLNFISFLNVSNNKLEGQIP 950

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579302|ref|XP_002530496.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223529953|gb|EEF31880.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 353/694 (50%), Positives = 458/694 (65%), Gaps = 48/694 (6%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
           TL LS C LQG FP K+  V TLE +DLS N+ LQG LP+  +N+SL+ L L+   FSG+
Sbjct: 263 TLSLSSCKLQGTFPTKVFHVSTLEIIDLSFNKELQGYLPDSFQNASLKTLKLNNIKFSGS 322

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
           LPD IG L NLT + +  C FTGPIP SM NLT+L ++DFSSN F+G IPSL  S+ L Y
Sbjct: 323 LPDPIGALGNLTRINLATCTFTGPIPTSMENLTELVYLDFSSNTFTGSIPSLDGSKKLMY 382

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           +D S N LSG IS+  W+ L NL  + L +NS NGSIP SLF + +L+ + LS NQF  Q
Sbjct: 383 VDFSNNYLSGVISNIDWKGLSNLVHIDLKNNSFNGSIPLSLFAIQSLQKIMLSYNQFGGQ 442

Query: 181 LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFS------------ 228
           +PE  N S+  L  LDLS N LEGPVP S +FELR L  L L+SNKFS            
Sbjct: 443 IPEFPNASTLSLDTLDLSNNNLEGPVPHS-VFELRRLNVLSLASNKFSGTIKLDQIQKLV 501

Query: 229 ------------------------------RLRLASSKPRVIPILKNQSQLSGLDISNNQ 258
                                          L+LAS   R+ P L+NQS+++ LD+++N+
Sbjct: 502 NLTTVDLSYNKLTVDVNATNSTSSFPLRLTTLKLASCNLRMFPDLRNQSRITNLDLADNK 561

Query: 259 IPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSIS-SIRLLDLHSNQLRGNIPHMSTN 317
           I G +P WI +VGNG+L  LNLS NLLVSL EP S+S ++ +LDLHSNQL+GNIP     
Sbjct: 562 IAGSVPPWIGQVGNGSLLNLNLSRNLLVSLPEPLSLSNTLAVLDLHSNQLQGNIPSPPPL 621

Query: 318 TSYVDYSNNHF-TFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNL 376
            S VD SNN+F + IP +IG+ +S   +F  +NN + GVIPES+C   Y +VLDLSNN+L
Sbjct: 622 VSVVDLSNNNFSSSIPYNIGDNLSVAIFFSLSNNRVEGVIPESLCTASYLEVLDLSNNSL 681

Query: 377 SGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLA 436
            G+IP+CLI +SE TLGVLNL +NN  G + D  F R C L+ LDL GN L+G VP+SL 
Sbjct: 682 IGSIPSCLIERSE-TLGVLNLRKNNFTGRIPDN-FSRKCKLETLDLSGNLLEGKVPESLI 739

Query: 437 NCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDL 496
           NC +L+VLDL +N I+D FPC L N SSL+VLVL++NNF G++SCP +N +W  LQIVD+
Sbjct: 740 NCTILEVLDLGSNKINDTFPCLLRNISSLRVLVLRNNNFYGNLSCPSSNATWARLQIVDI 799

Query: 497 ASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLL 556
           A N F+GRL  + L   + M+ A  ++   +K  +++     +Y+  +TVT KG+E  L+
Sbjct: 800 ALNSFTGRLPNRMLSKWKAMIGAGNETHGPIK-FKFLKVGGLYYQDSITVTSKGLEMQLV 858

Query: 557 KVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLS 616
           K+  +FTSID S N F+G IPE +G+F +LY LN+SHNAL G IP S GN+  +ESLDLS
Sbjct: 859 KILTLFTSIDVSCNKFQGQIPERLGQFSALYILNLSHNALDGQIPPSLGNVSNLESLDLS 918

Query: 617 MNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT 650
            N+L+G+IP QL  L FLS LNLS N LVG IPT
Sbjct: 919 NNHLTGEIPRQLTDLTFLSFLNLSGNELVGDIPT 952

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37956237|gb|AAP20228.1| resistance protein SlVe1 precursor [Solanum lycopersicoides] gi|37956239|gb|AAP20229.1| resistance protein SlVe1 precursor [Solanum lycopersicoides]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 336/696 (48%), Positives = 450/696 (64%), Gaps = 49/696 (7%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
           TL L  C LQG FP+KI QV  LE+LDLS N+LL GS+P+FP+N SLR + LS T FSG+
Sbjct: 267 TLSLDSCNLQGAFPKKIFQVQVLESLDLSNNKLLSGSIPSFPRNGSLRRISLSYTNFSGS 326

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
           LP+SI NL+NL+ + +   NF GPIP +MANL  L ++DFS N+F+G IP   +S+ L Y
Sbjct: 327 LPESISNLQNLSRLGLSDFNFNGPIPSTMANLINLGYLDFSRNNFTGSIPHFQRSKKLTY 386

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           LDLS N L+G +S   +E L  L  + +  NSLNG++P  +F LP+L+ L+L++NQF  Q
Sbjct: 387 LDLSRNGLTGLLSRAHFEGLSELVYINVGDNSLNGTLPAYIFELPSLQQLFLNSNQFVGQ 446

Query: 181 LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSR----------- 229
           + E  N SSS+L  +DL  N L G +P S  FE+  L  L LSSN FS            
Sbjct: 447 VDEFRNASSSLLDTVDLRNNHLNGSIPKS-TFEIGRLKVLSLSSNFFSGTVTLDLIGRLN 505

Query: 230 -------------------------------LRLASSKPRVIPILKNQSQLSGLDISNNQ 258
                                          L+LAS + +  P L NQS +  LD+S+NQ
Sbjct: 506 NLSRLELSYNNLTVDASSSNSTSFTFPQLSILKLASCRLQKFPDLMNQSMMIHLDLSDNQ 565

Query: 259 IPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISS-IRLLDLHSNQLRGNIPHMSTN 317
           I G IPNWIW +G+  L  LNLS N L  +++PY+ SS + +LDLH+N+L+G++    ++
Sbjct: 566 IRGAIPNWIWGIGDQGLTHLNLSFNQLEYMEQPYTASSNLVVLDLHTNRLKGDLLIPPSS 625

Query: 318 TSYVDY-SNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNL 376
             YVDY SNN    IP DIG  +    +F  ANN + G+IPES+C   Y Q+LD SNN L
Sbjct: 626 PIYVDYSSNNSNNSIPLDIGKSLGFASFFSVANNGITGIIPESICDVSYLQILDFSNNAL 685

Query: 377 SGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLA 436
           SGTIP CL+  S TTLGVLNLG N L+G + D+ FP +C L  LDL  N+LQG +PKSL 
Sbjct: 686 SGTIPPCLLEYS-TTLGVLNLGNNRLHGVIPDS-FPIDCALNTLDLSENKLQGRLPKSLV 743

Query: 437 NCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDL 496
           NC +L+VL+  NN + D+FPC L N++SL+VLVL+SN FSG++ C     SWP LQI+D+
Sbjct: 744 NCKLLEVLNAGNNRLVDHFPCMLRNSNSLRVLVLRSNQFSGNLQCEVTINSWPNLQIIDI 803

Query: 497 ASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVIS--SNQFYEVGVTVTVKGVETM 554
           ASN F+G L+ ++      MMVA+    +   H++Y     SN +Y+  VT+T+KG+E  
Sbjct: 804 ASNNFTGVLNAEFFSNWRGMMVADDYVETGRNHIQYKFFELSNMYYQDTVTLTIKGMELE 863

Query: 555 LLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLD 614
           L+K+  +FTSIDFSSN F+G IP+ +G   SLY LN+SHNAL G IP S G L+ +ESLD
Sbjct: 864 LVKILRVFTSIDFSSNRFQGAIPDTIGNLSSLYVLNLSHNALEGPIPKSIGKLQMLESLD 923

Query: 615 LSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT 650
           LS N+LSG+IP++LASL FL+ LNLS+N   GKIP+
Sbjct: 924 LSRNHLSGEIPSELASLTFLAALNLSFNKFFGKIPS 959

Source: Solanum lycopersicoides

Species: Solanum lycopersicoides

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315436722|gb|ADU18534.1| verticillium wilt resistance-like protein [Gossypium barbadense]

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 342/699 (48%), Positives = 449/699 (64%), Gaps = 54/699 (7%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
           +L L   GL G+ P++I Q+PTL+TLDLS N LL+GS PNFP N+SL+ L LS T F G 
Sbjct: 267 SLSLRSTGLNGRLPDEIFQIPTLQTLDLSYNMLLKGSFPNFPLNASLQALALSSTKFGGQ 326

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
           +P+S+ NL  LT +E+  CNF+GPIP ++  LTQL  +DFS+N+FSG IPS   SRNL  
Sbjct: 327 IPESLDNLGQLTRIELAGCNFSGPIPKAVEKLTQLVSLDFSNNNFSGPIPSFSSSRNLTN 386

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           L L+ N L G I ST W  L  L    L  N L+G+IP +LF +P+L+ L LS+NQF   
Sbjct: 387 LSLAHNKLVGTIHSTDWSSLSKLEDADLGDNKLSGTIPPTLFGIPSLQRLDLSHNQFNGS 446

Query: 181 LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELR------------------------- 215
           + +  + +SS+L  LDLS N+L+G  P + +FELR                         
Sbjct: 447 IGDFHDKASSLLNTLDLSNNKLKGQFP-TPLFELRGLEILHLSSNNFSGLIPMNAFQNLG 505

Query: 216 NLYTLDLSSNK-----------------FSRLRLASSKPRVIP-ILKNQSQLSGLDISNN 257
           NL +LDLS N+                 F+ L LAS      P  LKNQS L  LD+SNN
Sbjct: 506 NLLSLDLSHNRLSIDATATNISLLSFPTFTGLGLASCNLTEFPGFLKNQSSLMYLDLSNN 565

Query: 258 QIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYS--ISSIRLLDLHSNQLRGNIPHMS 315
            I G+IP+WIW+  +  L  LNLS N LV  + P     SS++++DLH NQL+G IP  +
Sbjct: 566 HIHGKIPDWIWKPID--LLRLNLSDNFLVGFERPVKNITSSVQIIDLHVNQLQGEIPIPT 623

Query: 316 TNTSYVDYSNNHFT-FIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNN 374
            + +Y+DYS+N+F+  +PA IG+ +    +F  +NN++ G IP S+C     +VLDLSNN
Sbjct: 624 LDATYLDYSDNNFSSVLPAHIGDSLQRVSFFSISNNNIHGSIPPSICSSTSLRVLDLSNN 683

Query: 375 NLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKS 434
           +LSG IP CL  Q   +LGVL+L +NNL+G +SDT F ++C LQ L L  N+L+G VPKS
Sbjct: 684 SLSGPIPQCLF-QMSGSLGVLDLRQNNLSGIISDT-FSKSCKLQTLKLDQNRLEGKVPKS 741

Query: 435 LANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIV 494
           L NC ML+VLD+ NN I+D+FP  L N + L VLVL+SN F+GHI C  NN  W +LQI 
Sbjct: 742 LGNCKMLEVLDIGNNQINDSFPWHLKNIAKLHVLVLRSNKFNGHIDCSGNNGGWSMLQIF 801

Query: 495 DLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSN---QFYEVGVTVTVKGV 551
           DLASN FSG+L    L T + M      +  ELKHL +V S +     Y+  +T+T KG+
Sbjct: 802 DLASNNFSGKLHLTCLGTWDAMQHNPYSNLLELKHLHFVDSGSGGGTRYQDAITITTKGL 861

Query: 552 ETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIE 611
           E  L+K+  +FTSID S NNFEGPIPE +G+FK L+ LN SHNA TG IPSSFGNL+++E
Sbjct: 862 ELELVKILPVFTSIDISWNNFEGPIPEVIGKFKELHGLNFSHNAFTGPIPSSFGNLRELE 921

Query: 612 SLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT 650
           SLDLS N+L G+IP QLA+LNFLS LN+S N LVG IPT
Sbjct: 922 SLDLSSNSLRGEIPLQLANLNFLSCLNVSNNKLVGPIPT 960

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14279670|gb|AAK58682.1|AF272367_1 verticillium wilt disease resistance protein [Solanum lycopersicum]

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 336/696 (48%), Positives = 445/696 (63%), Gaps = 49/696 (7%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
           TL L  C LQG FPE+I QV  LE+LDLS N+LL+GS+P F +N SLR + LS T FSG+
Sbjct: 267 TLTLGSCNLQGTFPERIFQVSVLESLDLSINKLLRGSIPIFFRNGSLRRISLSYTNFSGS 326

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
           LP+SI N +NL+ +E+  CNF G IP +MANL  L ++DFS N+F+G IP    S+ L Y
Sbjct: 327 LPESISNHQNLSRLELSNCNFYGSIPSTMANLRNLGYLDFSFNNFTGSIPYFRLSKKLTY 386

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           LDLS N L+G +S   +E L  L  + L +N L+GS+P  +F LP+L+ L+L  NQF  Q
Sbjct: 387 LDLSRNGLTGLLSRAHFEGLSELVHINLGNNLLSGSLPAYIFELPSLQQLFLYRNQFVGQ 446

Query: 181 LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKF------------- 227
           + E  N SSS L  +DL+ N L G +P S +FE+  L  L LSSN F             
Sbjct: 447 VDEFRNASSSPLDTVDLTNNHLNGSIPKS-MFEIERLKVLSLSSNFFRGTVPLDLIGRLS 505

Query: 228 --SR---------------------------LRLASSKPRVIPILKNQSQLSGLDISNNQ 258
             SR                           L+LAS + +  P LKNQS +  LD+S+NQ
Sbjct: 506 NLSRLELSYNNLTVDASSSNSTSFTFPQLNILKLASCRLQKFPDLKNQSWMMHLDLSDNQ 565

Query: 259 IPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISS-IRLLDLHSNQLRGNIPHMSTN 317
           I G IPNWIW +G G L  LNLS N L  +++PY+ SS + +LDLHSN+L+G++      
Sbjct: 566 ILGAIPNWIWGIGGGGLTHLNLSFNQLEYVEQPYTASSNLVVLDLHSNRLKGDLLIPPCT 625

Query: 318 TSYVDYSNNHF-TFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNL 376
             YVDYS+N+    IP DIG  +    +F  ANN + G+IPES+C   Y QVLD SNN L
Sbjct: 626 AIYVDYSSNNLNNSIPTDIGKSLGFASFFSVANNGITGIIPESICNCSYLQVLDFSNNAL 685

Query: 377 SGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLA 436
           SGTIP CL+  S T LGVLNLG N LNG + D+ F   C LQ LDL  N LQG +PKS+ 
Sbjct: 686 SGTIPPCLLEYS-TKLGVLNLGNNKLNGVIPDS-FSIGCALQTLDLSANNLQGRLPKSIV 743

Query: 437 NCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDL 496
           NC +L+VL++ NN + D+FPC L N++SL+VLVL+SN F G++ C     SW  LQI+D+
Sbjct: 744 NCKLLEVLNVGNNRLVDHFPCMLRNSNSLRVLVLRSNKFYGNLMCDVTRNSWQNLQIIDI 803

Query: 497 ASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRY--VISSNQFYEVGVTVTVKGVETM 554
           ASN F+G L+ ++      MMVA+    +   H++Y  +  S  +Y+  VT+T+KG+E  
Sbjct: 804 ASNNFTGVLNAEFFSNWRGMMVADDYVETGRNHIQYEFLQLSKLYYQDTVTLTIKGMELE 863

Query: 555 LLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLD 614
           L+K+  +FTSIDFSSN F+G IP+ +G   SLY LN+SHNAL G IP S G L+ +ESLD
Sbjct: 864 LVKILRVFTSIDFSSNRFQGAIPDAIGNLSSLYVLNLSHNALEGPIPKSIGKLQMLESLD 923

Query: 615 LSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT 650
           LS N+LSG+IP++LASL FL+ LNLS+N L GKIP+
Sbjct: 924 LSTNHLSGEIPSELASLTFLAALNLSFNKLFGKIPS 959

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|237899595|gb|ACR33102.1| verticillium wilt disease resistance protein [Solanum lycopersicum] gi|237899601|gb|ACR33105.1| verticillium wilt disease resistance protein [Solanum lycopersicum] gi|237899603|gb|ACR33106.1| verticillium wilt disease resistance protein [Solanum lycopersicum]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 336/696 (48%), Positives = 445/696 (63%), Gaps = 49/696 (7%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
           TL L  C LQG FPE+I QV  LE+LDLS N+LL+GS+P F +N SLR + LS T FSG+
Sbjct: 267 TLTLGSCNLQGTFPERIFQVSVLESLDLSINKLLRGSIPIFFRNGSLRRISLSYTNFSGS 326

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
           LP+SI N +NL+ +E+  CNF G IP +MANL  L ++DFS N+F+G IP    S+ L Y
Sbjct: 327 LPESISNHQNLSRLELSNCNFYGSIPSTMANLRNLGYLDFSFNNFTGSIPYFRLSKKLTY 386

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           LDLS N L+G +S   +E L  L  + L +N L+GS+P  +F LP+L+ L+L  NQF  Q
Sbjct: 387 LDLSRNGLTGLLSRAHFEGLSELVHINLGNNLLSGSLPAYIFELPSLQQLFLYRNQFVGQ 446

Query: 181 LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKF------------- 227
           + E  N SSS L  +DL+ N L G +P S +FE+  L  L LSSN F             
Sbjct: 447 VDEFRNASSSPLDTVDLTNNHLNGSIPKS-MFEIERLKVLSLSSNFFRGTVPLDLIGRLS 505

Query: 228 --SR---------------------------LRLASSKPRVIPILKNQSQLSGLDISNNQ 258
             SR                           L+LAS + +  P LKNQS +  LD+S+NQ
Sbjct: 506 NLSRLELSYNNLTVDASSSNSTSFTFPQLNILKLASCRLQKFPDLKNQSWMMHLDLSDNQ 565

Query: 259 IPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISS-IRLLDLHSNQLRGNIPHMSTN 317
           I G IPNWIW +G G L  LNLS N L  +++PY+ SS + +LDLHSN+L+G++      
Sbjct: 566 ILGAIPNWIWGIGGGGLTHLNLSFNQLEYVEQPYTASSNLVVLDLHSNRLKGDLLIPPCT 625

Query: 318 TSYVDYSNNHF-TFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNL 376
             YVDYS+N+    IP DIG  +    +F  ANN + G+IPES+C   Y QVLD SNN L
Sbjct: 626 AIYVDYSSNNLNNSIPTDIGKSLGFASFFSVANNGITGIIPESICNCSYLQVLDFSNNAL 685

Query: 377 SGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLA 436
           SGTIP CL+  S T LGVLNLG N LNG + D+ F   C LQ LDL  N LQG +PKS+ 
Sbjct: 686 SGTIPPCLLEYS-TKLGVLNLGNNKLNGVIPDS-FSIGCALQTLDLSANNLQGRLPKSIV 743

Query: 437 NCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDL 496
           NC +L+VL++ NN + D+FPC L N++SL+VLVL+SN F G++ C     SW  LQI+D+
Sbjct: 744 NCKLLEVLNVGNNRLVDHFPCMLRNSNSLRVLVLRSNKFYGNLMCDVTRNSWQNLQIIDI 803

Query: 497 ASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRY--VISSNQFYEVGVTVTVKGVETM 554
           ASN F+G L+ ++      MMVA+    +   H++Y  +  S  +Y+  VT+T+KG+E  
Sbjct: 804 ASNNFTGVLNAEFFSNWRGMMVADDYVETGRNHIQYEFLQLSKLYYQDTVTLTIKGMELE 863

Query: 555 LLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLD 614
           L+K+  +FTSIDFSSN F+G IP+ +G   SLY LN+SHNAL G IP S G L+ +ESLD
Sbjct: 864 LVKILRVFTSIDFSSNRFQGAIPDAIGNLSSLYVLNLSHNALEGPIPKSIGKLQMLESLD 923

Query: 615 LSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT 650
           LS N+LSG+IP++LASL FL+ LNLS+N L GKIP+
Sbjct: 924 LSTNHLSGEIPSELASLTFLAALNLSFNKLFGKIPS 959

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147806063|emb|CAN76702.1| hypothetical protein VITISV_032508 [Vitis vinifera]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 335/696 (48%), Positives = 427/696 (61%), Gaps = 75/696 (10%)

Query: 2   LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTL 61
           L LS CGL G FPEKI QVPTL+ LDLS B+LLQGSLP FP+N SL  L+LS T FSG +
Sbjct: 231 LRLSSCGLHGTFPEKIFQVPTLQXLDLSNBKLLQGSLPKFPQNGSLGTLVLSDTKFSGKV 290

Query: 62  PDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYL 121
           P SIGNL+ LT +E+  C+F+GPIP SMA+LTQL ++D S+N FSG IP    S+NL  +
Sbjct: 291 PYSIGNLKXLTRIELAGCDFSGPIPNSMADLTQLVYLDLSNNKFSGSIPPFSLSKNLTRI 350

Query: 122 DLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQL 181
           +LS N L+G ISS+ W+ LVNL  + L  NSLNGS+P  LF LP+L+ + LSNN+F   L
Sbjct: 351 NLSHNYLTGPISSSHWDGLVNLVTLDLRDNSLNGSLPMLLFSLPSLQKIQLSNNKFSGPL 410

Query: 182 PEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKF-------------- 227
            + S V  SVL  LD S N LEGP+P+S+ F+L  L  LDLSSNKF              
Sbjct: 411 SKFSVVPFSVLETLDSSSNNLEGPIPVSV-FDLHCLNILDLSSNKFNGTVELSSFQKLGN 469

Query: 228 ----------------------------SRLRLASSKPRVIPILKNQSQLSGLDISNNQI 259
                                       + L+LAS K   +P L  QS+L+ LD+S+NQI
Sbjct: 470 LSTLSLSYNFLSTNASVGNPTSPLLSNLTTLKLASCKLXTLPDLSTQSRLTHLDLSDNQI 529

Query: 260 PGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYS--ISSIRLLDLHSNQLRGNIPHMSTN 317
            G IPNWIW++GNG+L  LNLSHNLL  LQE +S     + +LDLHSNQL G IP     
Sbjct: 530 RGSIPNWIWKIGNGSLMHLNLSHNLLEDLQETFSNFTPYLSILDLHSNQLHGQIPTPPQF 589

Query: 318 TSYVDYSNNHF-TFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNL 376
           + YVDYSNN F + IP DIG +MS T +F    N++ G IP S+C   Y QVLD S+N  
Sbjct: 590 SKYVDYSNNSFNSSIPDDIGTYMSFTIFFSLXKNNITGSIPRSICNATYLQVLDFSDNAF 649

Query: 377 SGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLA 436
           SG IP+CLI Q+E  L VLNLGRN   GT+   +  + C L+ LDL  N LQG +P+SL 
Sbjct: 650 SGEIPSCLI-QNEA-LAVLNLGRNKFVGTIXGELXHK-CLLRTLDLSENLLQGNIPESLV 706

Query: 437 NCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDL 496
           NC  L++L+L NN I D FPCWL N SSL+VLVL++N F G I CP++N +W  LQI DL
Sbjct: 707 NCKELEILNLGNNQIDDIFPCWLKNISSLRVLVLRANKFHGTIGCPKSNSTWATLQIFDL 766

Query: 497 ASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVIS--SNQFYEVGVTVTVKGVETM 554
           A N FSG+L  K L T   +M  E +  S+LK L++ +      +Y+  V V  KG E  
Sbjct: 767 AFNNFSGKLPAKCLSTWTAIMAGENEVQSKLKILQFRVPQFGQLYYQDTVRVISKGQEME 826

Query: 555 LLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLD 614
           L+K+  +FTSID+S NNFEG IPE +                        GNL  +  L+
Sbjct: 827 LVKILTLFTSIDWSYNNFEGEIPEVI------------------------GNLTSLYVLN 862

Query: 615 LSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT 650
           LS N  +G+IP+ +  L  L  L+LS N L G+IPT
Sbjct: 863 LSHNGFTGQIPSSIGKLRQLESLDLSQNRLSGEIPT 898

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	650
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.521	0.387	0.337	4.6e-73
TAIR|locus:2094603	835	RLP37 "receptor like protein 3	0.921	0.717	0.301	2.3e-70
TAIR|locus:2086974	881	RLP41 "AT3G25010" [Arabidopsis	0.903	0.666	0.315	7.8e-70
TAIR|locus:2096349	860	RLP31 "receptor like protein 3	0.935	0.706	0.289	4.2e-69
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.932	0.715	0.293	2e-67
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.92	0.692	0.297	1.5e-66
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.884	0.733	0.308	1.6e-65
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.929	0.695	0.309	4.1e-65
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.933	0.678	0.314	2.9e-64
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.935	0.635	0.304	4.8e-63

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 4.6e-73, Sum P(2) = 4.6e-73
 Identities = 122/361 (33%), Positives = 188/361 (52%)

Query:   297 IRLLDLHSNQLRGNIPH-MSTNTSYVDYSNNHFTFIPADIGNFMSET-------EYFFAA 348
             +R LD+ +N+++G +P  +     Y+  SNN+F  I  +    + +T       ++FF +
Sbjct:   430 MRTLDISNNKIKGQVPSWLLLQLEYMHISNNNF--IGFERSTKLEKTVVPKPSMKHFFGS 487

Query:   349 NNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSEXXXXXXXXXXXXXXXXXSD 408
             NN+  G IP  +C      +LDLSNNN SG IP C + + +                   
Sbjct:   488 NNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPC-VGKFKSTLSDLNLRRNRLSGSLPK 546

Query:   409 TIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVL 468
             TI      L+ LD+  N+L+G +P+SL + + L+VL++++N I+D FP WL +   LQVL
Sbjct:   547 TIIK---SLRSLDVSHNELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVL 603

Query:   469 VLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELK 528
             VL+SN F G I   R    +P L+I+D++ N F+G L     +    M   E K+     
Sbjct:   604 VLRSNAFHGRIHKTR----FPKLRIIDISRNHFNGTLPSDCFVEWTGMHSLE-KNEDRFN 658

Query:   529 HLRYVISSNQFYXXXXXXXXXXXXXMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYA 588
               +Y+ S   +Y              L+++  I+T++DFS N FEG IP  +G  K L+ 
Sbjct:   659 E-KYMGSG--YYHDSMVLMNKGLEMELVRILKIYTALDFSGNKFEGEIPRSIGLLKELHI 715

Query:   589 LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQXXXXXXXXXXXXXXXXXVGKI 648
             LN+S N  TG IPSS GNL+++ESLD+S N LSG+IP +                 VG++
Sbjct:   716 LNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQV 775

Query:   649 P 649
             P
Sbjct:   776 P 776

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 623 (224.4 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
 Identities = 189/626 (30%), Positives = 285/626 (45%)

Query:    12 KFPEKILQVPTLETLDLSENQLLQGSLPNFPKN-SSLRNLILSGTGFSGTLPDSIGNLEN 70
             K    + ++  L  L+LS   L QG +P+   N S L  L LS     G  P SIGNL  
Sbjct:   103 KSSSSLFKLRHLRHLELSHCNL-QGEIPSSIGNLSHLTYLDLSFNQLVGEFPVSIGNLNQ 161

Query:    71 LTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSG 130
             L ++++      G IP S ANLT+L  +    N F+G    L    +L  +DLS N  + 
Sbjct:   162 LEYIDLWVNALGGNIPTSFANLTKLSELHLRQNQFTGGDIVLSNLTSLSIVDLSSNYFNS 221

Query:   131 GISSTFWEQXXXXXXXXXXXXXXXGSIPRSLFLLPNLETLWLSNNQFENQLPEIXXXXXX 190
              IS+    Q               G  P  L ++P+L  + LS NQFE  +         
Sbjct:   222 TISADL-SQLHNLERFWVSENSFFGPFPSFLLMIPSLVDICLSENQFEGPINFGNTTSSS 280

Query:   191 XXXXXXXXGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLS 250
                      N L+G +P SI   L +L  L+LS N F R ++ SS  +++        L 
Sbjct:   281 KLTELDVSYNNLDGLIPKSIS-TLVSLEHLELSHNNF-RGQVPSSISKLV-------NLD 331

Query:   251 GLDISNNQIPGEIPNWIWEXXXXXXXXXXXXXXXXXXXQEPYSISSIRLLDLHSNQLRGN 310
             GL +S+N   G++P+ I++                        + ++  LDL  N+  G+
Sbjct:   332 GLYLSHNNFGGQVPSSIFKLVNLEHLDLSHNDFGGRVPSSISKLVNLSSLDLSYNKFEGH 391

Query:   311 IPHM---STNTSYVDYSNNHFTFIPA--DIGNFMSETEYFFAANNSLVGVIPESVCKGIY 365
             +P     S+    VD S N F       ++G+   E ++  ++N SL G IP+ +C   +
Sbjct:   392 VPQCIWRSSKLDSVDLSYNSFNSFGRILELGDESLERDWDLSSN-SLQGPIPQWICNFRF 450

Query:   366 FQVLDLSNNNLSGTIPACLIAQSEXXXXXXXXXXXXXXXXXSDTIFPRNCGLQILDLGGN 425
             F  LD SNN+L+G+IP CL  ++                   D     +  L  LD+  N
Sbjct:   451 FSFLDFSNNHLNGSIPQCL--KNSTDFYMLNLRNNSLSGFMPDFCMDGSM-LGSLDVSLN 507

Query:   426 QLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNN 485
              L G +P+S  NC  ++ L+++ N I D FP WLG+   L VLVL+SN F G +      
Sbjct:   508 NLVGKLPESFINCEWMEYLNVRGNKIKDTFPVWLGSLQYLTVLVLRSNTFYGPVYKASAY 567

Query:   486 VSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVI--SSNQF---- 539
             + +P ++I+D+++N F G L Q +     EM     +    L + R +    SN      
Sbjct:   568 LGFPSMRIMDISNNNFVGSLPQDYFANWTEMSSVWQRPMLTLDYKRNIAIPGSNYMGDDN 627

Query:   540 YXXXXXXXXXXXXXMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGS 599
             +                ++   F  IDFS N F G IP  +G    L  LN+S NA TG+
Sbjct:   628 HQDSIDLVYKGVDTDFEQIFGGFKVIDFSGNRFSGHIPRSIGLLSELLHLNLSGNAFTGN 687

Query:   600 IPSSFGNLKQIESLDLSMNNLSGKIP 625
             IP S  ++ ++E+LDLS NNLSG+IP
Sbjct:   688 IPPSLASITKLETLDLSRNNLSGEIP 713

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086974 RLP41 "AT3G25010" [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 7.8e-70, Sum P(2) = 7.8e-70
 Identities = 206/652 (31%), Positives = 289/652 (44%)

Query:     2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSL-PNFP--KNSSLRNLILSGTGF- 57
             LDLS+  L G     +  +  L  LD+S N    G L PN    +   L  L L    F 
Sbjct:   152 LDLSDNELTGSL-SFVRNLRKLRVLDVSYNHF-SGILNPNSSLFELHHLTYLSLGSNSFT 209

Query:    58 SGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRN 117
             S TLP   GNL  L  ++V   +F G +PP+++NLTQL  +    N F+G +P +     
Sbjct:   210 SSTLPYEFGNLNKLELLDVSSNSFFGQVPPTISNLTQLTELYLPLNDFTGSLPLVQNLTK 269

Query:   118 LKYLDLSFNNLSGGI-SSTFWEQXXXXXXXXXXXXXXXGSIPRSLFLLPNLETLWLSNNQ 176
             L  L L  N+ SG I SS F                    +P S      LE+L+L  N 
Sbjct:   270 LSILALFGNHFSGTIPSSLFTMPFLSYLSLKGNNLNGSIEVPNSSSS-SRLESLYLGKNH 328

Query:   177 FENQ-LPEIXXXXXXXXXXXXXXGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASS 235
             FE + L  I                    P+ +S+    ++L  LDL+ +  S+  L+S 
Sbjct:   329 FEGKILKPISKLINLKELDLSFLSTSY--PIDLSLFSSFKSLLVLDLTGDWISQAGLSSD 386

Query:   236 ------------KPRVI---P-ILKNQSQLSGLDISNNQIPGEIPNWIWEXXXXXXXXXX 279
                         K   I   P ILK+   L  +D+SNN++ G+IP W+W           
Sbjct:   387 SYISLTLEALYMKQCNISDFPNILKSLPNLECIDVSNNRVSGKIPEWLWSLPRLSSVFIG 446

Query:   280 XXXXXXXXXQEPYSI-SSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNF 338
                           + SS+++L L SN L G +PH+                 P  I   
Sbjct:   447 DNLLTGFEGSSEILVNSSVQILVLDSNSLEGALPHL-----------------PLSI--- 486

Query:   339 MSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSEXXXXXXXXX 398
                  YF A  N   G IP S+C      VLDL  NN +G IP CL              
Sbjct:   487 ----IYFSARYNRFKGDIPLSICNRSSLDVLDLRYNNFTGPIPPCL-----SNLLFLNLR 537

Query:   399 XXXXXXXXSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCW 458
                      DT F  +  L+ LD+G N+L G +P+SL NC+ LQ L + +N I D FP +
Sbjct:   538 KNNLEGSIPDTYFA-DAPLRSLDVGYNRLTGKLPRSLLNCSALQFLSVDHNGIEDTFPFY 596

Query:   459 LGNASSLQVLVLQSNNFSGHISCP-RNNVSWPLLQIVDLASNKFSGRLSQKWLLTME-EM 516
             L     LQVL+L SN F G +S P + ++ +P L+I+++A NK +G L Q + +  +   
Sbjct:   597 LKVLPKLQVLLLSSNKFYGPLSPPNQGSLGFPELRILEIAGNKLTGSLPQDFFVNWKASS 656

Query:   517 MVAETKSGSELKHLRYVISSNQFYXXXXXXXXXXXXXMLLKVPNIFTS---IDFSSNNFE 573
             +      G  + + + V     +Y             + ++   + TS   ID S N  E
Sbjct:   657 LTMNEDQGLYMVYSKVVYGI--YYLSYLATIDLQYKGLSMEQKWVLTSSATIDLSGNRLE 714

Query:   574 GPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 625
             G IPE +G  K+L ALN+S+NA TG IP S  NL +IESLDLS N LSG IP
Sbjct:   715 GEIPESIGLLKALIALNLSNNAFTGHIPLSLANLVKIESLDLSSNQLSGTIP 766

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2096349 RLP31 "receptor like protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
 Identities = 184/636 (28%), Positives = 290/636 (45%)

Query:     2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTL 61
             L LS C L G  P  +  +  L  LDLS N L+    P+    S L  L L      G L
Sbjct:   113 LTLSNCSLYGDIPSSLGNLFRLTLLDLSYNYLVGQVPPSIGNLSRLTILDLWDNKLVGQL 172

Query:    62 PDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLKY 120
             P SIGNL  L ++      F+G IP + +NLT+L  ++  +N F   +P  +   +NL Y
Sbjct:   173 PASIGNLTQLEYLIFSHNKFSGNIPVTFSNLTKLLVVNLYNNSFESMLPLDMSGFQNLDY 232

Query:   121 LDLSFNNLSGGISSTFWEQXXXXXXXXXXXXXXXGSIP-RSLFLLPN--LETLWLSNNQF 177
              ++  N+ SG +  + +                 G I  R+++  P+  L+ L+LS N+F
Sbjct:   233 FNVGENSFSGTLPKSLFT-IPSLRWANLEGNMFKGPIEFRNMYS-PSTRLQYLFLSQNKF 290

Query:   178 ENQLPEIXXXXXXXXXXXXXXGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKP 237
             +  +P+                N L G  P + +F +  L  ++L  N           P
Sbjct:   291 DGPIPDTLSQYLNLIELDLSFNN-LTGSFP-TFLFTIPTLERVNLEGNHLKG-------P 341

Query:   238 RVIPILKNQSQLSGLDISNNQIPGEIPNWIWEXXXXXXXXXXXXXXXXXXXQEPYSISSI 297
                  + + S L  L+ + N+  G IP  + +                     P SIS +
Sbjct:   342 VEFGNMSSSSSLKFLNFAQNEFNGSIPESVSQYLNLEELHLSFNNFIGTI---PRSISKL 398

Query:   298 RLLD---LHSNQLRGNIPHMSTNTSYVDYSNNHF-TFIPADIGNFMSETEYFFAANNSLV 353
               L+   L  N + G +P      + V  SNN F +F  +  G   ++ ++   ++NS  
Sbjct:   399 AKLEYFCLEDNNMVGEVPSWLWRLTMVALSNNSFNSFGESSEGLDETQVQWLDLSSNSFQ 458

Query:   354 GVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSEXXXXXXXXXXXXXXXXXSDTIFPR 413
             G  P  +CK    ++L +S+N  +G+IP CL   S                     IF  
Sbjct:   459 GPFPHWICKLRSLEILIMSDNRFNGSIPPCL--SSFMVSLTDLILRNNSLSGPLPDIFVN 516

Query:   414 NCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSN 473
                L  LD+  N+L GV+PKSL +C  +Q+L++++N I D FP WLG+  SL VL+L+SN
Sbjct:   517 ATKLLSLDVSRNKLDGVLPKSLIHCKAMQLLNVRSNKIKDKFPSWLGSLPSLHVLILRSN 576

Query:   474 NFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSG----SELKH 529
              F G +  P  ++ +  L+++D++ N   G L   +  +  EM     + G    SE  +
Sbjct:   577 EFYGTLYQPHASIGFQSLRVIDVSHNDLIGTLPSFYFSSWREMSRLTGEDGDFRLSEAPY 636

Query:   530 LRYVISSNQFYXXXXXXXXXXXXXMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYAL 589
             +  V+++  F+                ++      I+FS N F G IPE +G  K L  L
Sbjct:   637 MGKVLNATAFFVDSMEIVNKGVETEFKRINEENKVINFSGNRFSGNIPESIGLLKELRHL 696

Query:   590 NMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 625
             N+S NA TG+IP S  NL ++E+LDLS+N LSG+IP
Sbjct:   697 NLSSNAFTGNIPQSLANLMKLEALDLSLNQLSGQIP 732

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 615 (221.5 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
 Identities = 184/627 (29%), Positives = 278/627 (44%)

Query:     2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKN-SSLRNLILSGTGFSGT 60
             LDL+ C L G+ P  +  +  L  ++L  N+ + G +P    N + LR+LIL+    +G 
Sbjct:   115 LDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFV-GEIPASIGNLNQLRHLILANNVLTGE 173

Query:    61 LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPS-LHKSRNLK 119
             +P S+GNL  L  +E+      G IP S+ +L QL ++  +SN+  G IPS L    NL 
Sbjct:   174 IPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLV 233

Query:   120 YLDLSFNNLSGGISSTFWEQXXXXXXXXXXXXXXXGSIPRSLFLLPNLETLWLSNNQFEN 179
             +L L+ N L G + ++                   G+IP S   L  L    LS+N F +
Sbjct:   234 HLVLTHNQLVGEVPASIGN-LIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTS 292

Query:   180 QLPEIXXXXXXXXXXXXXXGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRV 239
               P                 N   GP P S++  + +L ++ L  N+F+        P  
Sbjct:   293 TFP-FDMSIFHNLEYFDVSYNSFSGPFPKSLLL-IPSLESIYLQENQFTG-------PIE 343

Query:   240 IPILKNQSQLSGLDISNNQIPGEIPNWIWEXXXXXXXXXXXXXXXXXXXQEPYSISSIRL 299
                  + ++L  L +  N++ G IP  I                          + ++  
Sbjct:   344 FANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPTISKLVNLLH 403

Query:   300 LDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPES 359
             LDL  N L G +P      + +  S+N F+    +     +  E     +NS  G IP  
Sbjct:   404 LDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFE-NTSQEEALIEELDLNSNSFQGPIPYM 462

Query:   360 VCKGIYFQVLDLSNNNLSGTIPACLIAQSEXXXXXXXXXXXXXXXXXSDTIFPRNCGLQI 419
             +CK      LDLSNN  SG+IP+C I                      D IF +   L  
Sbjct:   463 ICKLSSLGFLDLSNNLFSGSIPSC-IRNFSGSIKELNLGDNNFSGTLPD-IFSKATELVS 520

Query:   420 LDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHI 479
             LD+  NQL+G  PKSL NC  L+++++++N I D FP WL +  SL VL L+SN F G +
Sbjct:   521 LDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPL 580

Query:   480 SCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHL-RYVISSNQ 538
                  ++ +  L+I+D++ N FSG L   +    ++M     +    +    RY  S   
Sbjct:   581 YHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYADS--- 637

Query:   539 FYXXXXXXXXXXXXXMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTG 598
              Y                ++   F +IDFS N   G IPE +G  K L  LN+S NA T 
Sbjct:   638 -YYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTS 696

Query:   599 SIPSSFGNLKQIESLDLSMNNLSGKIP 625
              IP    NL ++E+LD+S N LSG+IP
Sbjct:   697 VIPRFLANLTKLETLDISRNKLSGQIP 723

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 1.5e-66, Sum P(2) = 1.5e-66
 Identities = 191/642 (29%), Positives = 284/642 (44%)

Query:     2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNS-----SLRNLILSGTG 56
             +DLS   L G FP  +  +  L  LDLS+N    G+L N P NS     SLR L L+   
Sbjct:   139 IDLSHNDLMGSFP-LVRNLGKLAVLDLSDNHF-SGTL-N-PNNSLFELHSLRYLNLAFNN 194

Query:    57 FSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSR 116
              S +LP   GNL  L  + +    F+G   P+++NLT++  +   +N  +G  P +    
Sbjct:   195 ISSSLPSKFGNLNKLEVLSLSFNGFSGQCFPTISNLTRITQLYLHNNELTGSFPLVQNLT 254

Query:   117 NLKYLDLSFNNLSGGISSTFWEQXXXXXXXXXXXXXXXGSI--PRSLFLLPNLETLWLSN 174
              L +L LS N  SG I S  +                 GSI  P S      LE ++L  
Sbjct:   255 KLSFLGLSDNLFSGTIPSYLFT-FPSLSTLDLRENDLSGSIEVPNSS-TSSKLEIMYLGF 312

Query:   175 NQFENQLPEIXXXXXXXXXXXXXXGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLAS 234
             N  E ++ E                N    P+ ++++  L++L  LD S N  S   L+S
Sbjct:   313 NHLEGKILEPISKLINLKRLDLSFLNT-SYPIDLNLLSPLKSLSYLDFSGNSLSPASLSS 371

Query:   235 SKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEXXXXXXXXXXXXXXXXXXXQEPYSI 294
             S    IP+      LS   I       E PN +                     +  +++
Sbjct:   372 SS--YIPLSMESIVLSLCGIR------EFPNILKHLQNLIHIDITSNQIKGKIPEWLWTL 423

Query:   295 SSIRLLDLHSNQLRGN------IPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAA 348
               +  +D+ +N   G         ++S     +D +NN    +P    + +     F A 
Sbjct:   424 PQLSFVDISNNSFNGFQGSAEVFVNLSVRILMLD-ANNFEGALPTLPLSIIG----FSAI 478

Query:   349 NNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSEXXXXXXXXXXXXXXXXXSD 408
             +NS  G IP S+C      ++DLS NN +G IP CL                       D
Sbjct:   479 HNSFTGEIPLSICNRTSLTMVDLSYNNFTGPIPQCL-----SNFMFVNLRKNDLEGSIPD 533

Query:   409 TIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVL 468
             T +  +  L+ LD+G N+L G +P+SL NC+ L+ L + NN + D FP WL    +L+VL
Sbjct:   534 TFYT-DSSLKSLDVGYNRLTGKLPRSLLNCSSLRFLSVDNNRVKDTFPFWLKALPNLRVL 592

Query:   469 VLQSNNFSGHISCPRNN-VSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSEL 527
              L+SN F G IS P    + +P L+I ++A N F+G L   + +  +   + + + G   
Sbjct:   593 TLRSNKFYGPISPPHQGPLGFPELRIFEIADNMFTGSLPPSFFVNWKASALTKNEDGGLY 652

Query:   528 KHLRYVISSNQ----FYXXXXXXXXXXXXXMLLKVPNIFTSIDFSSNNFEGPIPEEMGRF 583
                 Y  ++N      Y                +V   + +IDFS N  +G IPE +G  
Sbjct:   653 MVYEYDKAANSPVRYTYTDTIDLQYKGLHMEQERVLTSYAAIDFSGNRLQGQIPESIGLL 712

Query:   584 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 625
             K+L ALN+S+NA TG IP SF NL  +ESLD+S N LSG IP
Sbjct:   713 KALIALNLSNNAFTGHIPLSFANLMNLESLDMSGNQLSGTIP 754

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
 Identities = 188/610 (30%), Positives = 275/610 (45%)

Query:    25 TLDLSENQLLQGSLPNFPKNSSL------RNLILSGTGFSGTLPDSIGNLENLTWVEVRR 78
             +LDL  + LL  SL     NSSL      R+L LSG    G +P S+GNL  L  +E+  
Sbjct:    80 SLDL-RSTLLNSSLKT---NSSLFRLQYLRHLDLSGCNLHGEIPSSLGNLSRLENLELSS 135

Query:    79 CNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPS-LHKSRNLKYLDLSFNNLSGGISSTFW 137
                 G IP S+ NL QL ++    N   G IPS L     L  LDL  N+L G + ++  
Sbjct:   136 NRLVGEIPYSIGNLKQLRNLSLGDNDLIGEIPSSLGNLSLLLDLDLWNNSLVGEVPASIG 195

Query:   138 EQXXXXXXXXXXXXXXXGSIPRSLFLLPNLETLWLSNNQFENQLPEIXXXXXXXXXXXXX 197
                              GSIP S   L  L    +  N F + LP               
Sbjct:   196 N-LNELRVMSLDRNSLSGSIPISFTNLTKLSEFRIFFNNFTS-LPS-DLSGFHNLVTFDI 252

Query:   198 XGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNN 257
               N   G  P   +F + +L  + +  N+FS        P     + + S+L  L ++ N
Sbjct:   253 SANSFSGHFP-KFLFSIPSLAWVSMDRNQFSG-------PIEFANISSSSKLQNLILTRN 304

Query:   258 QIPGEIPNWIWEXXXXXXXXXXXXXXXXXXXQEPYSISSIRLLDLHSNQLRGNIPHMSTN 317
             ++ G IP  I +                   +    + S+R+    +N+L G +P     
Sbjct:   305 KLDGSIPESISKFLNLVLLDVAHNNISGPVPRSMSKLVSLRIFGFSNNKLEGEVPSWLWR 364

Query:   318 TSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCK--GIYFQVLDLSNNN 375
              S    S+N F+     I +  +  +    + NS  G  P  +CK  G++F  LDLSNN 
Sbjct:   365 LSSTMLSHNSFSSFEK-IYSKETMIQVLDLSFNSFRGTFPVWICKLKGLHF--LDLSNNL 421

Query:   376 LSGTIPACLIAQSEXXXXXXXXXXXXXXXXXSDTIFPRNCGLQILDLGGNQLQGVVPKSL 435
              +G+IP CL                       D IF  N  LQ LD+ GNQL+G  PKSL
Sbjct:   422 FNGSIPLCL---RNFNLTGLILGNNKFSGTLPD-IFANNTNLQSLDVSGNQLEGKFPKSL 477

Query:   436 ANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVD 495
              NC  L  +++++N I D FP WLG+  SLQVL+L+SN+F G +  P  ++ +  L+I+D
Sbjct:   478 INCKGLHFVNVESNKIKDTFPSWLGSLPSLQVLILRSNDFYGPLYHPSMSIGFQGLRIID 537

Query:   496 LASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYXXXXXXXXXXXXXML 555
             ++ N FSG L   +  +  EM+      GS  +++  + + +  Y               
Sbjct:   538 ISHNGFSGVLPPNFFSSWREMITLV--HGS-YEYIEDIQNYSLIYRSMEMVNKGVEMSFE 594

Query:   556 LKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDL 615
              ++   F +IDFS N   G IPE +G  + L  LN+S NA T  IP  + NL ++E+LDL
Sbjct:   595 -RIRQDFRAIDFSENRIYGEIPESIGCLEELRLLNLSGNAFTSDIPRVWENLTKLETLDL 653

Query:   616 SMNNLSGKIP 625
             S N LSG+IP
Sbjct:   654 SRNKLSGQIP 663

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 199/644 (30%), Positives = 303/644 (47%)

Query:     1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKN-SSLRNLILSGTGFSG 59
             TLDLS     G+ P  I     L TLDLS+N    G +P+   N S L  L LSG  F G
Sbjct:   123 TLDLSYNYFSGQIPSCIENFSHLTTLDLSKNYF-SGGIPSSIGNLSQLTFLDLSGNEFVG 181

Query:    60 TLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKS-RNL 118
              +P   GN+  LT + V   + TG  P S+ NL  L  +  S N F+G +PS   S  NL
Sbjct:   182 EMP-FFGNMNQLTNLYVDSNDLTGIFPLSLLNLKHLSDLSLSRNQFTGTLPSNMSSLSNL 240

Query:   119 KYLDLSFNNLSGGISSTFWEQXXXXXXXXXXXXXXXGSIPRSLFLLPN-LETLWLSNNQF 177
             +Y +   N  +G + S+ +                 G++       P+ L  L +SNN F
Sbjct:   241 EYFEAWGNAFTGTLPSSLFT-IASLTSINLRNNQLNGTLEFGNISSPSTLTVLDISNNNF 299

Query:   178 ENQLPEIXXXXXXXXXXXXXXGNRLEGPVPISIIFELRNLYTLDLSS-NKFSRLRLASSK 236
                +P+                N  +GPV  SI   L++L  L+LS  N  + + L +  
Sbjct:   300 IGPIPKSISKFINLQDLDLSHLNT-QGPVDFSIFTNLKSLQLLNLSHLNTTTTIDLNAL- 357

Query:   237 PRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEXXXXXXXXXXXXXXXXXXXQEPYSISS 296
                     + + +  +D+S N +       + +                         S 
Sbjct:   358 -----FSSHLNSIYSMDLSGNHVSATTKISVADHHPTQLISQLYLSGCGITEFPELLRSQ 412

Query:   297 IRL--LDLHSNQLRGNIPH-MST--NTSYVDYSNNHFTFIPADIGNFMS-----ETEYFF 346
              ++  LD+ +N+++G +P  + T     +VD SNN FT       + +S       +Y  
Sbjct:   413 HKMTNLDISNNKIKGQVPGWLWTLPKLIFVDLSNNIFTGFERSTEHGLSLITKPSMQYLV 472

Query:   347 AANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSEXXXXXXXXXXXXXXXXX 406
              +NN+  G IP  +C       LDLS+NNL+G+IP C+    +                 
Sbjct:   473 GSNNNFTGKIPSFICALRSLITLDLSDNNLNGSIPPCM-GNLKSTLSFLNLRQNRLGGGL 531

Query:   407 SDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQ 466
               +IF     L+ LD+G NQL G +P+S    + L+VL+++NN I+D FP WL +   LQ
Sbjct:   532 PRSIFK---SLRSLDVGHNQLVGKLPRSFIRLSALEVLNVENNRINDTFPFWLSSLKKLQ 588

Query:   467 VLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLT---MEEMMVAETKS 523
             VLVL+SN F G    P ++ S+  L+I++L+ N+FSG L   + +    M  +M  E +S
Sbjct:   589 VLVLRSNAFHG----PIHHASFHTLRIINLSHNQFSGTLPANYFVNWNAMSSLMATEDRS 644

Query:   524 GSELKHLRYVISSNQFYXXXXXXXXXXXXXMLLKVPNIFTSIDFSSNNFEGPIPEEMGRF 583
                    +Y+  S ++Y              L+++  I+T++DFS N  EG IP  +G  
Sbjct:   645 QE-----KYMGDSFRYYHDSVVLMNKGLEMELVRILKIYTALDFSENKLEGEIPRSIGLL 699

Query:   584 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ 627
             K L+ LN+S NA TG IPSS GNL+++ESLD+S N LSG+IP +
Sbjct:   700 KELHVLNLSSNAFTGHIPSSMGNLRELESLDVSQNKLSGEIPQE 743

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
 Identities = 206/655 (31%), Positives = 300/655 (45%)

Query:     2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKN-SSLRNLILSGTGFSGT 60
             L LS     G+ P  I  +  L  L LS N+   G  P+     S+L NL LS   +SG 
Sbjct:   135 LGLSGNRFFGQIPSSIGNLSHLTFLGLSGNRFF-GQFPSSIGGLSNLTNLHLSYNKYSGQ 193

Query:    61 LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPS-LHKSRNLK 119
             +P SIGNL  L  + +   NF G IP S  NL QL  +D S N   G+ P+ L     L 
Sbjct:   194 IPSSIGNLSQLIVLYLSVNNFYGEIPSSFGNLNQLTRLDVSFNKLGGNFPNVLLNLTGLS 253

Query:   120 YLDLSFNNLSGGISSTFWEQXXXXXXXXXXXXXXXGSIPRSLFLLPNLETLWLSNNQFEN 179
              + LS N  +G +                      G+ P  LF++P+L  L LS NQ + 
Sbjct:   254 VVSLSNNKFTGTLPPNI-TSLSNLMAFYASDNAFTGTFPSFLFIIPSLTYLGLSGNQLKG 312

Query:   180 QLPEIXXXXXXXXXXXXXXG-NRLEGPVPISIIFELRNLYTLDLSS-NK---------FS 228
              L E               G N   GP+P SI  +L NL  L +S  N          FS
Sbjct:   313 TL-EFGNISSPSNLQYLNIGSNNFIGPIPSSIS-KLINLQELGISHLNTQCRPVDFSIFS 370

Query:   229 RLR---------LASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEXXXXXXXXXX 279
              L+         L ++   +  IL     L  LD+S N +     + +            
Sbjct:   371 HLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDLSGNLVSATNKSSV-SSDPPSQSIQS 429

Query:   280 XXXXXXXXXQEPYSISS---IRLLDLHSNQLRGNIPH-MST--NTSYVDYSNNHFTFIPA 333
                        P  + +   +  LD+ +N+++G +P  + T  N  Y++ SNN F     
Sbjct:   430 LYLSGCGITDFPEILRTQHELGFLDVSNNKIKGQVPGWLWTLPNLFYLNLSNNTFIGFQR 489

Query:   334 DIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSEXXXX 393
                   S   Y   +NN+  G IP  +C+      LDLS+NN SG+IP C+    +    
Sbjct:   490 PTKPEPSMA-YLLGSNNNFTGKIPSFICELRSLYTLDLSDNNFSGSIPRCM-ENLKSNLS 547

Query:   394 XXXXXXXXXXXXXSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD 453
                           + IF     L+ LD+G NQL G +P+SL   + L+VL++++N I+D
Sbjct:   548 ELNLRQNNLSGGFPEHIFE---SLRSLDVGHNQLVGKLPRSLRFFSNLEVLNVESNRIND 604

Query:   454 NFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTM 513
              FP WL +   LQVLVL+SN F G    P N   +P L+I+D++ N F+G L  ++ +  
Sbjct:   605 MFPFWLSSLQKLQVLVLRSNAFHG----PINQALFPKLRIIDISHNHFNGSLPTEYFVEW 660

Query:   514 EEMMVAET-KSGSELKHLRYVISSNQFYXXXXXXXXXXXXXMLLKVPNIFTSIDFSSNNF 572
               M    T + GS + +L      + +Y              L+++  I+T++DFS N F
Sbjct:   661 SRMSSLGTYEDGSNVNYL-----GSGYYQDSMVLMNKGVESELVRILTIYTAVDFSGNKF 715

Query:   573 EGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ 627
             EG IP+ +G  K L+ LN+S+NA TG IPSS GNL  +ESLD+S N L G+IP +
Sbjct:   716 EGEIPKSIGLLKELHVLNLSNNAFTGHIPSSIGNLTALESLDVSQNKLYGEIPQE 770

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 4.8e-63, P = 4.8e-63
 Identities = 199/654 (30%), Positives = 303/654 (46%)

Query:     2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKN-SSLRNLILSGTGFSGT 60
             LDLS     G+FP  I  +  L TL L  N+   G +P+   N S+L  L LS   FSG 
Sbjct:   198 LDLSYNRFFGQFPSSIGGLSHLTTLSLFSNKF-SGQIPSSIGNLSNLTTLDLSNNNFSGQ 256

Query:    61 LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPS-LHKSRNLK 119
             +P  IGNL  LT++ +   NF G IP S  NL QL  +    N  SG+ P+ L     L 
Sbjct:   257 IPSFIGNLSQLTFLGLFSNNFVGEIPSSFGNLNQLTRLYVDDNKLSGNFPNVLLNLTGLS 316

Query:   120 YLDLSFNNLSGGISSTFWEQXXXXXXXXXXXXXXXGSIPRSLFLLPNLETLWLSNNQFEN 179
              L LS N  +G +                      G+ P  LF +P+L  + L+ NQ + 
Sbjct:   317 LLSLSNNKFTGTLPPNI-TSLSNLMDFDASDNAFTGTFPSFLFTIPSLTYIRLNGNQLKG 375

Query:   180 QLPEIXXXXXXXXXXXXXXGNR-LEGPVPISIIFELRNLYTLDLSS-NK--------FSR 229
              L E               GN    GP+P SI  +L  L+ LD+S  N         FS 
Sbjct:   376 TL-EFGNISSPSNLYELDIGNNNFIGPIPSSIS-KLVKLFRLDISHLNTQGPVDFSIFSH 433

Query:   230 LRLA--------SSKPRVIP--ILKNQSQLSGLDISNNQIPGEIPNWIWEXXXXXXXXXX 279
             L+          ++  R+     L    +L  LD+S N +     + + +          
Sbjct:   434 LKSLLDLNISHLNTTTRIDLNYFLSYFKRLLLLDLSGNHVSATNKSSVSDPPSQLIQSLY 493

Query:   280 XXXXXXXXXQEPYSIS-SIRLLDLHSNQLRGNIPHMSTNTS---YVDYSNNHFTFIPADI 335
                       E       +  LD+ +N+++G +P          YV+ SNN  T I    
Sbjct:   494 LSGCGITEFPEFVRTQHELGFLDISNNKIKGQVPDWLWRLPILYYVNLSNN--TLIGFQR 551

Query:   336 GNFMSETE-YFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSEXXXXX 394
              +    +  Y   +NN+ +G IP  +C       LDLS+NN +G+IP C+    +     
Sbjct:   552 PSKPEPSLLYLLGSNNNFIGKIPSFICGLRSLNTLDLSDNNFNGSIPRCM-GHLKSTLSV 610

Query:   395 XXXXXXXXXXXXSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDN 454
                            IF     L+ LD+G NQL G +P+SL+  + L+VL++++N I+D 
Sbjct:   611 LNLRQNHLSGGLPKQIFEI---LRSLDVGHNQLVGKLPRSLSFFSTLEVLNVESNRINDT 667

Query:   455 FPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTME 514
             FP WL +   LQVLVL+SN F G    P +  ++P L+I+D++ N+F+G L  ++ +   
Sbjct:   668 FPFWLSSLPKLQVLVLRSNAFHG----PIHEATFPELRIIDISHNRFNGTLPTEYFVKWS 723

Query:   515 EMM-VAETKSGSELKHLRYVISSNQFYXXXXXXXXXXXXXMLLKVPNIFTSIDFSSNNFE 573
              M  + + +  S  K++     S  +Y              L+++  I+T++DFS N FE
Sbjct:   724 AMSSLGKNEDQSNEKYM----GSGLYYQDSMVLMNKGVAMELVRILTIYTAVDFSGNRFE 779

Query:   574 GPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ 627
             G IP+ +G  K L  L++S+NA +G +PSS GNL  +ESLD+S N L+G+IP +
Sbjct:   780 GEIPKSIGLLKELLVLSLSNNAFSGHMPSSMGNLTALESLDVSKNKLTGEIPQE 833

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00001339001 SubName- Full=Chromosome chr8 scaffold_115, whole genome shotgun sequence; (1074 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	650
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-59
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-51
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-41
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-38
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-05
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  214 bits (546), Expect = 3e-59
 Identities = 188/609 (30%), Positives = 291/609 (47%), Gaps = 60/609 (9%)

Query: 50  LILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHI 109
           L+LS   F  ++ D +  L N        C + G       N +++  +D S  + SG I
Sbjct: 33  LLLS---FKSSINDPLKYLSNWN-SSADVCLWQGIT---CNNSSRVVSIDLSGKNISGKI 85

Query: 110 -PSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLE 168
             ++ +   ++ ++LS N LSG I    +    +L  + LS+N+  GSIPR    +PNLE
Sbjct: 86  SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPNLE 143

Query: 169 TLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFS 228
           TL LSNN    ++P      SS+   LDL GN L G +P S+   L +L  L L+SN+  
Sbjct: 144 TLDLSNNMLSGEIPNDIGSFSSLKV-LDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQ-- 199

Query: 229 RLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSL 288
              L    PR +  +K+   L  + +  N + GEIP  I  + +  LN L+L +N L   
Sbjct: 200 ---LVGQIPRELGQMKS---LKWIYLGYNNLSGEIPYEIGGLTS--LNHLDLVYNNLTG- 250

Query: 289 QEPYS---ISSIRLLDLHSNQLRGNIPHMS---TNTSYVDYSNNHFTFIPADIGNFMSET 342
             P S   + +++ L L+ N+L G IP           +D S+N  +    ++   +   
Sbjct: 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310

Query: 343 EYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNL 402
           E     +N+  G IP ++      QVL L +N  SG IP  L   +  T  VL+L  NNL
Sbjct: 311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT--VLDLSTNNL 368

Query: 403 NGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNA 462
            G + + +      L  L L  N L+G +PKSL  C  L+ + L++N  S   P      
Sbjct: 369 TGEIPEGLCSSG-NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427

Query: 463 SSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETK 522
             +  L + +NN  G I+  + ++  P LQ++ LA NKF G L                 
Sbjct: 428 PLVYFLDISNNNLQGRINSRKWDM--PSLQMLSLARNKFFGGLPDS-------------- 471

Query: 523 SGSE-LKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMG 581
            GS+ L++L   +S NQF           V   L  +  +   +  S N   G IP+E+ 
Sbjct: 472 FGSKRLENLD--LSRNQFSGA--------VPRKLGSLSELM-QLKLSENKLSGEIPDELS 520

Query: 582 RFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSY 641
             K L +L++SHN L+G IP+SF  +  +  LDLS N LSG+IP  L ++  L  +N+S+
Sbjct: 521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH 580

Query: 642 NNLVGKIPT 650
           N+L G +P+
Sbjct: 581 NHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  191 bits (487), Expect = 2e-51
 Identities = 172/536 (32%), Positives = 248/536 (46%), Gaps = 76/536 (14%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPN--FPKNSSLRNLILSGTGFS 58
           ++DLS   + GK    I ++P ++T++LS NQL  G +P+  F  +SSLR L LS   F+
Sbjct: 73  SIDLSGKNISGKISSAIFRLPYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFT 131

Query: 59  GTL----------------------PDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLF 96
           G++                      P+ IG+  +L  +++      G IP S+ NLT L 
Sbjct: 132 GSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191

Query: 97  HMDFSSNHFSGHIPS-LHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNG 155
            +  +SN   G IP  L + ++LK++ L +NNLSG I       L +LN + L +N+L G
Sbjct: 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTG 250

Query: 156 SIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELR 215
            IP SL  L NL+ L+L  N+    +P  S  S   L  LDLS N L G +P  ++ +L+
Sbjct: 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIP-ELVIQLQ 308

Query: 216 NLYTLDLSSNKFSRL--RLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNG 273
           NL  L L SN F+       +S PR          L  L + +N+  GEIP     +G  
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPR----------LQVLQLWSNKFSGEIPK---NLGKH 355

Query: 274 NLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTN----TSYVDYSNNHFT 329
           N        NL V             LDL +N L G IP    +       + +SN+   
Sbjct: 356 N--------NLTV-------------LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394

Query: 330 FIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSE 389
            IP  +G   S        +NS  G +P    K      LD+SNNNL G I +       
Sbjct: 395 EIPKSLGACRS-LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS--RKWDM 451

Query: 390 TTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNN 449
            +L +L+L RN   G L D+   +   L+ LDL  NQ  G VP+ L + + L  L L  N
Sbjct: 452 PSLQMLSLARNKFFGGLPDSFGSKR--LENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509

Query: 450 HISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRL 505
            +S   P  L +   L  L L  N  SG I  P +    P+L  +DL+ N+ SG +
Sbjct: 510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQI--PASFSEMPVLSQLDLSQNQLSGEI 563

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  159 bits (404), Expect = 9e-41
 Identities = 159/486 (32%), Positives = 222/486 (45%), Gaps = 53/486 (10%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKN-SSLRNLILSGTGFSG 59
           TLDLS   L G+ P  I    +L+ LDL  N +L G +PN   N +SL  L L+     G
Sbjct: 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQLVG 202

Query: 60  TLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLK 119
            +P  +G +++L W+ +   N +G IP  +  LT L H+D   N+ +G IPS        
Sbjct: 203 QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-------- 254

Query: 120 YLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFEN 179
               S  NL             NL  + L  N L+G IP S+F L  L +L LS+N    
Sbjct: 255 ----SLGNLK------------NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298

Query: 180 QLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRV 239
           ++PE+  +    L  L L  N   G +P+++   L  L  L L SNKFS           
Sbjct: 299 EIPELV-IQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNKFS---------GE 347

Query: 240 IPI-LKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSIS--- 295
           IP  L   + L+ LD+S N + GEIP  +    +GNL  L L  N L   + P S+    
Sbjct: 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGL--CSSGNLFKLILFSNSLEG-EIPKSLGACR 404

Query: 296 SIRLLDLHSNQLRGNIPHMSTN---TSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSL 352
           S+R + L  N   G +P   T      ++D SNN+           M   +    A N  
Sbjct: 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464

Query: 353 VGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFP 412
            G +P+S       + LDLS N  SG +P  L + SE  L  L L  N L+G + D +  
Sbjct: 465 FGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSE--LMQLKLSENKLSGEIPDEL-- 519

Query: 413 RNC-GLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQ 471
            +C  L  LDL  NQL G +P S +   +L  LDL  N +S   P  LGN  SL  + + 
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579

Query: 472 SNNFSG 477
            N+  G
Sbjct: 580 HNHLHG 585

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  151 bits (383), Expect = 4e-38
 Identities = 147/463 (31%), Positives = 221/463 (47%), Gaps = 51/463 (11%)

Query: 2   LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTL 61
           LDL    L GK P  +  + +LE L L+ NQL+        +  SL+ + L     SG +
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 62  PDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLKY 120
           P  IG L +L  +++   N TGPIP S+ NL  L ++    N  SG IP S+   + L  
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           LDLS N+LSG I      QL NL ++ L  N+  G IP +L  LP L+ L L +N+F  +
Sbjct: 289 LDLSDNSLSGEIPELV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347

Query: 181 LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVI 240
           +P+     ++ L  LDLS N L G +P  +     NL+ L L SN        S +  + 
Sbjct: 348 IPKNLGKHNN-LTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSN--------SLEGEIP 397

Query: 241 PILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQE--PYSISSIR 298
             L     L  + + +N   GE+P+   ++    + FL++S+N L        + + S++
Sbjct: 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKL--PLVYFLDISNNNLQGRINSRKWDMPSLQ 455

Query: 299 LLDLHSNQLRGNIPHM--STNTSYVDYSNNHFT-FIPADIGNFMSETEYFFAANNSLVGV 355
           +L L  N+  G +P    S     +D S N F+  +P  +G+  SE      + N L G 
Sbjct: 456 MLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSL-SELMQLKLSENKLSGE 514

Query: 356 IPE--SVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPR 413
           IP+  S CK +    LDLS+N LSG IPA     S + + VL+                 
Sbjct: 515 IPDELSSCKKLV--SLDLSHNQLSGQIPA-----SFSEMPVLSQ---------------- 551

Query: 414 NCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFP 456
                 LDL  NQL G +PK+L N   L  +++ +NH+  + P
Sbjct: 552 ------LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.4 bits (188), Expect = 2e-14
 Identities = 31/76 (40%), Positives = 51/76 (67%)

Query: 574 GPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNF 633
           G IP ++ + + L ++N+S N++ G+IP S G++  +E LDLS N+ +G IP  L  L  
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 634 LSVLNLSYNNLVGKIP 649
           L +LNL+ N+L G++P
Sbjct: 492 LRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.0 bits (161), Expect = 3e-11
 Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 7/77 (9%)

Query: 564 SIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK 623
           SI+ S N+  G IP  +G   SL  L++S+N+  GSIP S G L  +  L+L+ N+LSG+
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 624 IPAQL-------ASLNF 633
           +PA L       AS NF
Sbjct: 506 VPAALGGRLLHRASFNF 522

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 1e-08
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 395 LNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDN 454
           L L    L G + + I  +   LQ ++L GN ++G +P SL +   L+VLDL  N  + +
Sbjct: 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 455 FPCWLGNASSLQVLVLQSNNFSGHI 479
            P  LG  +SL++L L  N+ SG +
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 25/62 (40%), Positives = 38/62 (61%)

Query: 588 ALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGK 647
            L + +  L G IP+    L+ ++S++LS N++ G IP  L S+  L VL+LSYN+  G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 648 IP 649
           IP
Sbjct: 482 IP 483

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 1e-07
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 27/112 (24%)

Query: 349 NNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSD 408
           N  L G IP  + K  + Q ++LS N++ G IP  L                   G+++ 
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-------------------GSIT- 466

Query: 409 TIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLG 460
                   L++LDL  N   G +P+SL     L++L+L  N +S   P  LG
Sbjct: 467 -------SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 1/102 (0%)

Query: 30  ENQLLQGSLPN-FPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPS 88
           +NQ L+G +PN   K   L+++ LSG    G +P S+G++ +L  +++   +F G IP S
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 89  MANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSG 130
           +  LT L  ++ + N  SG +P+    R L     +F + +G
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 3e-07
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 420 LDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHI 479
           L L    L+G +P  ++    LQ ++L  N I  N P  LG+ +SL+VL L  N+F+G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 480 SCPRNNVSWPLLQIVDLASNKFSGRL 505
             P +      L+I++L  N  SGR+
Sbjct: 483 --PESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           L L    L G I +    +L +L  + LS NS+ G+IP SL  + +LE L LS N F   
Sbjct: 423 LGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 181 LPEISNVSSSVLFDLDLSGNRLEGPVPISI 210
           +PE     +S L  L+L+GN L G VP ++
Sbjct: 482 IPESLGQLTS-LRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 74/228 (32%), Positives = 110/228 (48%), Gaps = 18/228 (7%)

Query: 85  IPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLN 144
              ++ NL  L  +D + N    +I  L +  NL  LDL  NN++            NL 
Sbjct: 85  GSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGL-LKSNLK 143

Query: 145 LVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEG 204
            + LS N +  S+P  L  LPNL+ L LS N   +    +SN+S+  L +LDLSGN++  
Sbjct: 144 ELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSN--LNNLDLSGNKIS- 199

Query: 205 PVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIP 264
            +P   I  L  L  LDLS+N         S   ++  L N   LSGL++SNN++     
Sbjct: 200 DLP-PEIELLSALEELDLSNN---------SIIELLSSLSNLKNLSGLELSNNKLEDLP- 248

Query: 265 NWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIP 312
                    NL  L+LS+N + S+    S++++R LDL  N L   +P
Sbjct: 249 --ESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALP 294

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 392 LGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHI 451
           L  L+L  N L   + D  F     L++LDL GN L  + P++ +    L+ LDL  N++
Sbjct: 2   LKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 8/81 (9%)

Query: 525 SELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFK 584
           S+L+HL+ +  S       +  ++  + ++          +D S N+F G IPE +G+  
Sbjct: 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSL--------EVLDLSYNSFNGSIPESLGQLT 490

Query: 585 SLYALNMSHNALTGSIPSSFG 605
           SL  LN++ N+L+G +P++ G
Sbjct: 491 SLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 2/80 (2%)

Query: 83  GPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWEQLV 141
           G IP  ++ L  L  ++ S N   G+IP SL    +L+ LDLS+N+ +G I  +   QL 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLT 490

Query: 142 NLNLVLLSHNSLNGSIPRSL 161
           +L ++ L+ NSL+G +P +L
Sbjct: 491 SLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 54/250 (21%), Positives = 86/250 (34%), Gaps = 39/250 (15%)

Query: 295 SSIRLLDLHSNQLRGN------IPHMSTNT---SYVDYSNNHFTFI-PADIGNFMSET-- 342
            S++ L L  N+          +    T       +D S+N         + + +  +  
Sbjct: 51  PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSL 110

Query: 343 EYFFAANNSLVGVIPESVCKGI-----YFQVLDLSNNNLS--GTIPACLIAQSETTLGVL 395
           +     NN L       + KG+       + L L  N L            ++   L  L
Sbjct: 111 QELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL 170

Query: 396 NLGRNNLNGTLSDTI---FPRNCGLQILDLGGNQL--QGV-----VPKSLANCNMLQVLD 445
           NL  N +       +      NC L++LDL  N L  +G         SL +   L+VL+
Sbjct: 171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS---LEVLN 227

Query: 446 LKNNHISDNFPCWLGNA-----SSLQVLVLQSNNF--SGHISCPRNNVSWPLLQIVDLAS 498
           L +N+++D     L +A      SL  L L  N+    G             L  +DL  
Sbjct: 228 LGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287

Query: 499 NKFSGRLSQK 508
           NKF    +Q 
Sbjct: 288 NKFGEEGAQL 297

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 39/223 (17%)

Query: 216 NLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISN-NQIPGEIPNWIWEVGNGN 274
           N+ TL  +SN+ + +      P  +P   +  Q   L I+   ++P  +P+         
Sbjct: 221 NIKTLYANSNQLTSI------PATLP---DTIQEMELSINRITELPERLPS--------A 263

Query: 275 LNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPAD 334
           L  L+L HN +  L E      +R L ++ N +R    H+ +  ++++  +N  T +P  
Sbjct: 264 LQSLDLFHNKISCLPENLP-EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPET 322

Query: 335 IGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGV 394
           +   +   +   A  N+L   +P S+   +  QVLD+S N ++  +P  L      T+  
Sbjct: 323 LPPGL---KTLEAGENALT-SLPASLPPEL--QVLDVSKNQIT-VLPETL----PPTITT 371

Query: 395 LNLGRNNLNGTLSDTIFPRN--CGLQILDLGGNQLQGVVPKSL 435
           L++ RN L      T  P N    LQI+    N L   +P+SL
Sbjct: 372 LDVSRNAL------TNLPENLPAALQIMQASRNNL-VRLPESL 407

Length = 754

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 5/115 (4%)

Query: 2   LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTL 61
           L L   GL+G  P  I ++  L++++LS N +     P+    +SL  L LS   F+G++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 62  PDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFH---MDFSSNHFSGHIPSLH 113
           P+S+G L +L  + +   + +G +P ++     L H    +F+ N     IP L 
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGR--LLHRASFNFTDNAGLCGIPGLR 535

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 585 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
           +L +L++S+N LT     +F  L  ++ LDLS NNL+   P   + L  L  L+LS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 28/106 (26%)

Query: 330 FIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSE 389
           FIP DI       +    + NS+ G IP S+      +VLDLS N+ +G+IP        
Sbjct: 433 FIPNDISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE------- 484

Query: 390 TTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSL 435
            +LG L                     L+IL+L GN L G VP +L
Sbjct: 485 -SLGQLTS-------------------LRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 8/211 (3%)

Query: 16  KILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVE 75
           ++L++  L +LDL  N +           S+L+ L LS      +LP  + NL NL  ++
Sbjct: 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLD 169

Query: 76  VRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISST 135
           +   + +  +P  ++NL+ L ++D S N  S   P +     L+ LDLS N++      +
Sbjct: 170 LSFNDLSD-LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII--ELLS 226

Query: 136 FWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDL 195
               L NL+ + LS+N L   +P S+  L NLETL LSNNQ  + +  + ++++  L +L
Sbjct: 227 SLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISSLGSLTN--LREL 282

Query: 196 DLSGNRLEGPVPISIIFELRNLYTLDLSSNK 226
           DLSGN L   +P+  +  L     L+L    
Sbjct: 283 DLSGNSLSNALPLIALLLLLLELLLNLLLTL 313

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 416 GLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNF 475
            L+ LDL  N+L  +   +      L+VLDL  N+++   P       SL+ L L  NN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLP-NFPKNSSLRNLILSGTGFSG 59
           +++LS   ++G  P  +  + +LE LDLS N    GS+P +  + +SLR L L+G   SG
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNS-FNGSIPESLGQLTSLRILNLNGNSLSG 504

Query: 60  TLPDSIG 66
            +P ++G
Sbjct: 505 RVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 9e-04
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 117 NLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQ 176
           NLK LDLS N L+  I    ++ L NL ++ LS N+L    P +   LP+L +L LS N 
Sbjct: 1   NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 177 F 177
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 57/210 (27%), Positives = 95/210 (45%), Gaps = 29/210 (13%)

Query: 244 KNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLH 303
            N+++L    +    IP  IP  I  +   N    +L  NL           +I+ L  +
Sbjct: 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ---------GNIKTLYAN 228

Query: 304 SNQLRGNIPHMSTNT-SYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCK 362
           SNQL  +IP    +T   ++ S N  T +P  + + +   + F    + L   +PE +  
Sbjct: 229 SNQLT-SIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKISCLPENLPEEL-- 285

Query: 363 GIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDL 422
               + L + +N++  T+PA L     + +  LN+  N+L   L +T+ P   GL+ L+ 
Sbjct: 286 ----RYLSVYDNSIR-TLPAHL----PSGITHLNVQSNSLT-ALPETLPP---GLKTLEA 332

Query: 423 GGNQLQGVVPKSLANCNMLQVLDLKNNHIS 452
           G N L   +P SL     LQVLD+  N I+
Sbjct: 333 GENALT-SLPASLP--PELQVLDVSKNQIT 359

Length = 754

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 69/249 (27%), Positives = 106/249 (42%), Gaps = 9/249 (3%)

Query: 12  KFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENL 71
             P  +  +P L+ LDLS N L           S+L NL LSG   S  LP  I  L  L
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLSDLP-KLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL 211

Query: 72  TWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGG 131
             +++   N    +  S++NL  L  ++ S+N       S+    NL+ LDLS N +S  
Sbjct: 212 EELDLSN-NSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-- 268

Query: 132 ISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSV 191
            S +    L NL  + LS NSL+ ++P    LL  LE   L N     +  E+   S  +
Sbjct: 269 -SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLEL--LLNLLLTLKALELKLNSILL 325

Query: 192 LFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSG 251
             ++  +G        +SI+  L NL+TLD + ++ +  R     P  I  L +  +   
Sbjct: 326 NNNILSNGETSSPEA-LSILESLNNLWTLDNALDESNLNRYIVKNPNAIGSLLDLVKKHV 384

Query: 252 LDISNNQIP 260
             +      
Sbjct: 385 NQLLEKVNY 393

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 53/280 (18%), Positives = 85/280 (30%), Gaps = 67/280 (23%)

Query: 2   LDLSECGLQ---GKFPEKILQV-PTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGF 57
           L L    L     K     L+  P+L+ L LS N+               R L     G 
Sbjct: 28  LRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET----------GRIPRGLQSLLQGL 77

Query: 58  SGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQ---LFHMDFSSNHFSGHIPSL-- 112
                        L  +++            + +L +   L  +  ++N        L  
Sbjct: 78  --------TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129

Query: 113 ----HKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVL----LSHNSLNGSIPRSLFL- 163
                    L+ L L  N L G  S     + +  N  L    L++N +  +  R+L   
Sbjct: 130 KGLKDLPPALEKLVLGRNRLEGA-SCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188

Query: 164 ---LPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFE-LRNLYT 219
                NLE L L+NN   +                       EG   ++     L++L  
Sbjct: 189 LKANCNLEVLDLNNNGLTD-----------------------EGASALAETLASLKSLEV 225

Query: 220 LDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQI 259
           L+L  N  +    A+       +L     L  L +S N I
Sbjct: 226 LNLGDNNLTDAGAAALASA---LLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	650
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.82
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.23
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.21
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.21
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.14
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.07
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.07
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.02
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.99
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.97
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.94
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.89
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.88
PLN03150	623	hypothetical protein; Provisional	98.86
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.81
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.77
PLN03150	623	hypothetical protein; Provisional	98.76
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.72
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.71
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.68
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.6
KOG4341	483	consensus F-box protein containing LRR [General fu	98.59
KOG4341	483	consensus F-box protein containing LRR [General fu	98.55
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.46
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.42
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.4
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.2
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.08
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.0
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.99
PRK15386	426	type III secretion protein GogB; Provisional	97.97
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.95
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.86
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.85
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.81
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.78
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.77
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.77
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.74
PRK15386	426	type III secretion protein GogB; Provisional	97.74
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.36
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.3
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.26
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.14
KOG4308	478	consensus LRR-containing protein [Function unknown	96.27
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.91
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.96
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.93
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.82
KOG4308	478	consensus LRR-containing protein [Function unknown	94.77
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.47
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.75
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.86
smart00370	26	LRR Leucine-rich repeats, outliers.	92.86
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.95
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.03
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.55
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.17
smart00370	26	LRR Leucine-rich repeats, outliers.	90.17
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.89
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	89.71
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	81.82
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	80.33

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.1e-53  Score=480.14  Aligned_cols=519  Identities=32%  Similarity=0.493  Sum_probs=414.5

Q ss_pred             CCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCC-CCCCCcEEEcCCCccccCCCcCccCCCCCcEE
Q 043523           20 VPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIG-NLENLTWVEVRRCNFTGPIPPSMANLTQLFHM   98 (650)
Q Consensus        20 ~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L   98 (650)
                      ..+++.|+++++.+.......|..+++|++|+|++|.+.+.+|..+. .+.+|++|++++|.+++..|.  +.+++|++|
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L  145 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL  145 (968)
T ss_pred             CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence            35788999999988776677888899999999999998877776654 899999999999998876664  468899999


Q ss_pred             EccCCccccc-CCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcC
Q 043523           99 DFSSNHFSGH-IPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQF  177 (650)
Q Consensus        99 ~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  177 (650)
                      ++++|.+... +..+..+++|++|++++|.+.+.++.. +.++++|++|++++|.+....|..+..+++|+.|++++|.+
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL  224 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence            9999988754 446788899999999999888777766 78899999999999998888888999999999999999988


Q ss_pred             CCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCC-CCCCCCCcEEEccC
Q 043523          178 ENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPI-LKNQSQLSGLDISN  256 (650)
Q Consensus       178 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-l~~~~~L~~L~l~~  256 (650)
                      ....+... ..+++|++|++++|.+.+.+|..+ ..+++|+.|++++|.+.         +.++. +..+++|++|++++
T Consensus       225 ~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~Ls~  293 (968)
T PLN00113        225 SGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLS---------GPIPPSIFSLQKLISLDLSD  293 (968)
T ss_pred             CCcCChhH-hcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeee---------ccCchhHhhccCcCEEECcC
Confidence            76555433 357889999999999887777765 88999999999999876         22332 67788999999999


Q ss_pred             CcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhh
Q 043523          257 NQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIG  336 (650)
Q Consensus       257 ~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~  336 (650)
                      |.+.+..|.++....  +|+.|++++|                      .+.+..+.                    . +
T Consensus       294 n~l~~~~p~~~~~l~--~L~~L~l~~n----------------------~~~~~~~~--------------------~-~  328 (968)
T PLN00113        294 NSLSGEIPELVIQLQ--NLEILHLFSN----------------------NFTGKIPV--------------------A-L  328 (968)
T ss_pred             CeeccCCChhHcCCC--CCcEEECCCC----------------------ccCCcCCh--------------------h-H
Confidence            998878887664332  2444444433                      33222211                    1 1


Q ss_pred             hccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCC
Q 043523          337 NFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCG  416 (650)
Q Consensus       337 ~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~  416 (650)
                      ..+++|+.+++++|.+.+..|..+..+.+|+.|++++|.+.+..|..+....  +|+.|++++|.+.+.++.. +..+++
T Consensus       329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~--~L~~L~l~~n~l~~~~p~~-~~~~~~  405 (968)
T PLN00113        329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG--NLFKLILFSNSLEGEIPKS-LGACRS  405 (968)
T ss_pred             hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC--CCCEEECcCCEecccCCHH-HhCCCC
Confidence            2255666666666666666677777777788888888877777776665543  7888888888877666654 778888


Q ss_pred             ccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeC
Q 043523          417 LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDL  496 (650)
Q Consensus       417 L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  496 (650)
                      |+.|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+..  +. ....++|+.|++
T Consensus       406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~--p~-~~~~~~L~~L~l  482 (968)
T PLN00113        406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL--PD-SFGSKRLENLDL  482 (968)
T ss_pred             CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeec--Cc-ccccccceEEEC
Confidence            999999999988888888888999999999999988888888888999999999999887543  33 334578999999


Q ss_pred             CCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCC
Q 043523          497 ASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPI  576 (650)
Q Consensus       497 ~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~  576 (650)
                      ++|.+.+..+..+                                               ..++.|+.|++++|.+.+..
T Consensus       483 s~n~l~~~~~~~~-----------------------------------------------~~l~~L~~L~Ls~N~l~~~~  515 (968)
T PLN00113        483 SRNQFSGAVPRKL-----------------------------------------------GSLSELMQLKLSENKLSGEI  515 (968)
T ss_pred             cCCccCCccChhh-----------------------------------------------hhhhccCEEECcCCcceeeC
Confidence            9998876554322                                               24667889999999999888


Q ss_pred             CccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCcccCCC
Q 043523          577 PEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT  650 (650)
Q Consensus       577 ~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~  650 (650)
                      ++.+..+++|++|+|++|.+++..|..|+.+++|+.|++++|++++..|..+.++++|+.+++++|++++++|+
T Consensus       516 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             ChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999985

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.1e-50  Score=457.43  Aligned_cols=496  Identities=35%  Similarity=0.507  Sum_probs=427.5

Q ss_pred             CCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCc-cCCCCCcEEEccCCcccccCCccccCCCcCEEe
Q 043523           44 NSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSM-ANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLD  122 (650)
Q Consensus        44 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l-~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~  122 (650)
                      ..+++.|+++++.+.+..+..+..+++|++|++++|++.+.+|..+ .++++|++|++++|.+.+..+. ..+++|++|+
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~  146 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLD  146 (968)
T ss_pred             CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEE
Confidence            3579999999999998889999999999999999999987777754 4999999999999999765553 4579999999


Q ss_pred             CCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcC
Q 043523          123 LSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRL  202 (650)
Q Consensus       123 l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  202 (650)
                      +++|.+.+.++.. ++.+++|++|++++|.+....|..+..+++|++|++++|.+....+... ..+.+|+.|++++|.+
T Consensus       147 Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        147 LSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNL  224 (968)
T ss_pred             CcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCcc
Confidence            9999998777777 8999999999999999988889999999999999999999876655433 3578999999999999


Q ss_pred             CCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCC-CCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeec
Q 043523          203 EGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPI-LKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLS  281 (650)
Q Consensus       203 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~  281 (650)
                      .+.+|..+ ..+++|+.|++++|.+.         +.++. +..+++|+.|++++|.+.+..|.++...           
T Consensus       225 ~~~~p~~l-~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-----------  283 (968)
T PLN00113        225 SGEIPYEI-GGLTSLNHLDLVYNNLT---------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL-----------  283 (968)
T ss_pred             CCcCChhH-hcCCCCCEEECcCceec---------cccChhHhCCCCCCEEECcCCeeeccCchhHhhc-----------
Confidence            98888776 89999999999999876         23333 7889999999999999987777766543           


Q ss_pred             cccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCccccccccccc
Q 043523          282 HNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVC  361 (650)
Q Consensus       282 ~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~  361 (650)
                                   ++|+.|++++|.+.+..+                    .. +..+++|+.+++++|.+.+..|..+.
T Consensus       284 -------------~~L~~L~Ls~n~l~~~~p--------------------~~-~~~l~~L~~L~l~~n~~~~~~~~~~~  329 (968)
T PLN00113        284 -------------QKLISLDLSDNSLSGEIP--------------------EL-VIQLQNLEILHLFSNNFTGKIPVALT  329 (968)
T ss_pred             -------------cCcCEEECcCCeeccCCC--------------------hh-HcCCCCCcEEECCCCccCCcCChhHh
Confidence                         234444444443332222                    22 22377888899999999989999999


Q ss_pred             CCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCC
Q 043523          362 KGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNML  441 (650)
Q Consensus       362 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L  441 (650)
                      .+++|+.|++++|.+.+.+|..+....  +|+.|++++|.+.+.++.. +..+++|+.|++++|.+.+..|..+..+++|
T Consensus       330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~--~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L  406 (968)
T PLN00113        330 SLPRLQVLQLWSNKFSGEIPKNLGKHN--NLTVLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNSLEGEIPKSLGACRSL  406 (968)
T ss_pred             cCCCCCEEECcCCCCcCcCChHHhCCC--CCcEEECCCCeeEeeCChh-HhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence            999999999999999988888776654  9999999999998777665 7788999999999999998999999999999


Q ss_pred             CEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhc
Q 043523          442 QVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAET  521 (650)
Q Consensus       442 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~  521 (650)
                      +.|++++|++.+..|..+..++.|+.|++++|.+.+..  +..+..+++|+.|++++|.+.+..+..+            
T Consensus       407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~p~~~------------  472 (968)
T PLN00113        407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI--NSRKWDMPSLQMLSLARNKFFGGLPDSF------------  472 (968)
T ss_pred             CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc--ChhhccCCCCcEEECcCceeeeecCccc------------
Confidence            99999999999888999999999999999999998654  5566788999999999998865444321            


Q ss_pred             ccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCC
Q 043523          522 KSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIP  601 (650)
Q Consensus       522 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~  601 (650)
                                                          ..+.|+.|++++|.+.+..+..+..+++|+.|++++|++++..|
T Consensus       473 ------------------------------------~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  516 (968)
T PLN00113        473 ------------------------------------GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP  516 (968)
T ss_pred             ------------------------------------ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC
Confidence                                                24678999999999999999999999999999999999999999


Q ss_pred             cCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCcccCCC
Q 043523          602 SSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT  650 (650)
Q Consensus       602 ~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~  650 (650)
                      +.+.++++|++|++++|.+++..|..+..+++|+.|++++|++++.+|+
T Consensus       517 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  565 (968)
T PLN00113        517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK  565 (968)
T ss_pred             hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence            9999999999999999999999999999999999999999999999984

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1e-38  Score=306.18  Aligned_cols=406  Identities=24%  Similarity=0.235  Sum_probs=258.6

Q ss_pred             CCEEeCCCCCCCCCCCCCCCCC--CcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEc
Q 043523           23 LETLDLSENQLLQGSLPNFPKN--SSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDF  100 (650)
Q Consensus        23 L~~L~ls~~~i~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l  100 (650)
                      -+.||.++..+.......+.++  ..-+.|++++|++.+..+..|.++++|+.+++.+|.++ ..|....-..+|+.|+|
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL  132 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence            3567888777754433344332  34566888888888777777888888888888888887 66776666677888888


Q ss_pred             cCCcccccCC-ccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCC
Q 043523          101 SSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFEN  179 (650)
Q Consensus       101 ~~~~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  179 (650)
                      .+|.|..+.. .+..++.|++||++.|.++. ++...|..-.++++|+++.|.|+....+.|..+.+|..|.+++|+++ 
T Consensus       133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~-i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-  210 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALPALRSLDLSRNLISE-IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-  210 (873)
T ss_pred             eccccccccHHHHHhHhhhhhhhhhhchhhc-ccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-
Confidence            8888876543 56667888888888888873 44333566677888888888888888888888888888888888887 


Q ss_pred             CCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcC
Q 043523          180 QLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQI  259 (650)
Q Consensus       180 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i  259 (650)
                      .+|...+..++.|+.|++..|++. .+....|.++++|+.|.+..|++..++.+.        |..+.++++|+++.|++
T Consensus       211 tLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~--------Fy~l~kme~l~L~~N~l  281 (873)
T KOG4194|consen  211 TLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGA--------FYGLEKMEHLNLETNRL  281 (873)
T ss_pred             ccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcc--------eeeecccceeecccchh
Confidence            344444555666666666666665 444445567777777777777666544332        44566666666666666


Q ss_pred             CCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhcc
Q 043523          260 PGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFM  339 (650)
Q Consensus       260 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~  339 (650)
                      ......|++...                        .|+.|+++                     .|.|..+..+.+.++
T Consensus       282 ~~vn~g~lfgLt------------------------~L~~L~lS---------------------~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  282 QAVNEGWLFGLT------------------------SLEQLDLS---------------------YNAIQRIHIDSWSFT  316 (873)
T ss_pred             hhhhcccccccc------------------------hhhhhccc---------------------hhhhheeecchhhhc
Confidence            544444444322                        22222222                     222222222233334


Q ss_pred             CCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccE
Q 043523          340 SETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQI  419 (650)
Q Consensus       340 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  419 (650)
                      ++|+.|+++.|.+....+.++..+..|++                          |.++.|.+. .+.+..|..+.+|++
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~--------------------------LnLs~Nsi~-~l~e~af~~lssL~~  369 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEE--------------------------LNLSHNSID-HLAEGAFVGLSSLHK  369 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhh--------------------------hcccccchH-HHHhhHHHHhhhhhh
Confidence            44444444444444444444444444444                          444444433 444455666666666


Q ss_pred             EEcCCCccccc---cchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeC
Q 043523          420 LDLGGNQLQGV---VPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDL  496 (650)
Q Consensus       420 L~ls~~~i~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  496 (650)
                      ||++.|.+...   ...+|..+++|+.|++.+|++..+.-.+|.+++.|++|+|.+|.|-+..  +..+..+ .|++|.+
T Consensus       370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq--~nAFe~m-~Lk~Lv~  446 (873)
T KOG4194|consen  370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQ--PNAFEPM-ELKELVM  446 (873)
T ss_pred             hcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeec--ccccccc-hhhhhhh
Confidence            66666665433   2345666777777777777777766666777777777777777776555  5556665 7777777


Q ss_pred             CCcccccccChHHHHhHHh
Q 043523          497 ASNKFSGRLSQKWLLTMEE  515 (650)
Q Consensus       497 ~~n~~~~~~~~~~~~~l~~  515 (650)
                      ..-.+.|.|...|+.+|..
T Consensus       447 nSssflCDCql~Wl~qWl~  465 (873)
T KOG4194|consen  447 NSSSFLCDCQLKWLAQWLY  465 (873)
T ss_pred             cccceEEeccHHHHHHHHH
Confidence            7778888899999988753

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-36  Score=292.23  Aligned_cols=395  Identities=21%  Similarity=0.214  Sum_probs=256.2

Q ss_pred             ccEEEccCCcCcCCCCCCCCCC--CCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCC
Q 043523           47 LRNLILSGTGFSGTLPDSIGNL--ENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLS  124 (650)
Q Consensus        47 L~~L~L~~~~~~~~~~~~~~~l--~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~  124 (650)
                      -+.|+.++..+.......+...  +.-+.|++++|++....+..|.++++|+.+++..|.++.+|.......+++.|++.
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~  133 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR  133 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence            4668888887763322333332  24567999999999988999999999999999999999666555555779999999


Q ss_pred             CCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCC
Q 043523          125 FNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEG  204 (650)
Q Consensus       125 ~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  204 (650)
                      +|.|.+....+ ++.++.|+.||++.|.+..+....|..-.++++|++++|.++ .+....+..+.+|..|.++.|+++ 
T Consensus       134 ~N~I~sv~se~-L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrit-  210 (873)
T KOG4194|consen  134 HNLISSVTSEE-LSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRIT-  210 (873)
T ss_pred             ccccccccHHH-HHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCccc-
Confidence            99998544444 899999999999999999777778888889999999999988 344445555667888888888888 


Q ss_pred             CCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeecccc
Q 043523          205 PVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNL  284 (650)
Q Consensus       205 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~  284 (650)
                      .+|...|..+++|+.|+|..|.+.-+....        |+++++|+.|.+..|.|.                        
T Consensus       211 tLp~r~Fk~L~~L~~LdLnrN~irive~lt--------FqgL~Sl~nlklqrN~I~------------------------  258 (873)
T KOG4194|consen  211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLT--------FQGLPSLQNLKLQRNDIS------------------------  258 (873)
T ss_pred             ccCHHHhhhcchhhhhhccccceeeehhhh--------hcCchhhhhhhhhhcCcc------------------------
Confidence            778777777888777777777654221100        333333333333333322                        


Q ss_pred             ccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCC
Q 043523          285 LVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGI  364 (650)
Q Consensus       285 l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~  364 (650)
                                                                   .+.+.                        .|..+.
T Consensus       259 ---------------------------------------------kL~DG------------------------~Fy~l~  269 (873)
T KOG4194|consen  259 ---------------------------------------------KLDDG------------------------AFYGLE  269 (873)
T ss_pred             ---------------------------------------------cccCc------------------------ceeeec
Confidence                                                         11112                        222233


Q ss_pred             cccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEE
Q 043523          365 YFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVL  444 (650)
Q Consensus       365 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L  444 (650)
                      .++.|+++.|++.                           ....+.+.++++|+.|++|+|.|.++.+.+++-+++|++|
T Consensus       270 kme~l~L~~N~l~---------------------------~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~L  322 (873)
T KOG4194|consen  270 KMEHLNLETNRLQ---------------------------AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKEL  322 (873)
T ss_pred             ccceeecccchhh---------------------------hhhcccccccchhhhhccchhhhheeecchhhhcccceeE
Confidence            3333333333332                           2222334445555555555555555555555555555555


Q ss_pred             eCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccC
Q 043523          445 DLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSG  524 (650)
Q Consensus       445 ~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~  524 (650)
                      +|++|+++...++.|..+..|++|+|++|++....  ...+..+.+|++|||++|.+...+..                 
T Consensus       323 dLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~--e~af~~lssL~~LdLr~N~ls~~IED-----------------  383 (873)
T KOG4194|consen  323 DLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA--EGAFVGLSSLHKLDLRSNELSWCIED-----------------  383 (873)
T ss_pred             eccccccccCChhHHHHHHHhhhhcccccchHHHH--hhHHHHhhhhhhhcCcCCeEEEEEec-----------------
Confidence            55555555555555555555555555555554433  33444555555555555554321111                 


Q ss_pred             cccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCc
Q 043523          525 SELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSF  604 (650)
Q Consensus       525 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~  604 (650)
                                                 ...++..+++|+.|++.+|++..+...+|.++.+|+.|+|.+|.|..+.+++|
T Consensus       384 ---------------------------aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF  436 (873)
T KOG4194|consen  384 ---------------------------AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF  436 (873)
T ss_pred             ---------------------------chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence                                       12334457777778888888877888888888888888888888888888888


Q ss_pred             cCCCCCCeeeCCCCc
Q 043523          605 GNLKQIESLDLSMNN  619 (650)
Q Consensus       605 ~~l~~L~~L~l~~n~  619 (650)
                      ..+ .|+.|.+..-.
T Consensus       437 e~m-~Lk~Lv~nSss  450 (873)
T KOG4194|consen  437 EPM-ELKELVMNSSS  450 (873)
T ss_pred             ccc-hhhhhhhcccc
Confidence            877 77777665443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.9e-39  Score=295.61  Aligned_cols=259  Identities=27%  Similarity=0.379  Sum_probs=136.7

Q ss_pred             ecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccc
Q 043523            3 DLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFT   82 (650)
Q Consensus         3 ~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~   82 (650)
                      .+++|.++ .....+.++..+.++++++|+. ...++++.++..++.+++++|++. .+|..+..+++|+.+++++|.+.
T Consensus        51 ils~N~l~-~l~~dl~nL~~l~vl~~~~n~l-~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~  127 (565)
T KOG0472|consen   51 ILSHNDLE-VLREDLKNLACLTVLNVHDNKL-SQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK  127 (565)
T ss_pred             hhccCchh-hccHhhhcccceeEEEeccchh-hhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee
Confidence            34444444 2223345555555555555554 333445555555555555555555 55555555555555555555555


Q ss_pred             cCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhcc
Q 043523           83 GPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLF  162 (650)
Q Consensus        83 ~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  162 (650)
                       ..|..++.+-.|+.++..+|++...+++++.+.++..+++.+|.++ ..+...+. ++.|+++++..|.++ ..|..++
T Consensus       128 -el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg  203 (565)
T KOG0472|consen  128 -ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELG  203 (565)
T ss_pred             -ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhc
Confidence             4555555555555555555555555555555555555555555555 33333223 555555555555555 4455555


Q ss_pred             CCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCC
Q 043523          163 LLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPI  242 (650)
Q Consensus       163 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~  242 (650)
                      .+.+|..|++++|.+. ..|++  ..|..|.++..+.|.+. .+|.....++                            
T Consensus       204 ~l~~L~~LyL~~Nki~-~lPef--~gcs~L~Elh~g~N~i~-~lpae~~~~L----------------------------  251 (565)
T KOG0472|consen  204 GLESLELLYLRRNKIR-FLPEF--PGCSLLKELHVGENQIE-MLPAEHLKHL----------------------------  251 (565)
T ss_pred             chhhhHHHHhhhcccc-cCCCC--CccHHHHHHHhcccHHH-hhHHHHhccc----------------------------
Confidence            5555555555555554 23322  22444555555555544 4444443444                            


Q ss_pred             CCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcC
Q 043523          243 LKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQL  307 (650)
Q Consensus       243 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l  307 (650)
                          +++..||+.+|++. +.|+.++-...  |++|++++|.++.+|...+--+|+.+.+.+|++
T Consensus       252 ----~~l~vLDLRdNklk-e~Pde~clLrs--L~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPl  309 (565)
T KOG0472|consen  252 ----NSLLVLDLRDNKLK-EVPDEICLLRS--LERLDLSNNDISSLPYSLGNLHLKFLALEGNPL  309 (565)
T ss_pred             ----ccceeeeccccccc-cCchHHHHhhh--hhhhcccCCccccCCcccccceeeehhhcCCch
Confidence                44555555555554 55655554433  666666666666666555422666666666654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-35  Score=298.78  Aligned_cols=146  Identities=31%  Similarity=0.430  Sum_probs=110.5

Q ss_pred             CeecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCc
Q 043523            1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN   80 (650)
Q Consensus         1 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~   80 (650)
                      ++|.+.+.++ ..|..+-....+..|.++.|.+..-..+...+..+|+.|++++|.+. ..|..+..+++|+.|+++.|.
T Consensus         2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~   79 (1081)
T KOG0618|consen    2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNY   79 (1081)
T ss_pred             CcccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhh
Confidence            4677888888 44444444445888888888876655556666667888888888877 677888888888888888888


Q ss_pred             cccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCC
Q 043523           81 FTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHN  151 (650)
Q Consensus        81 l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~  151 (650)
                      +. ..|....++.+|++++|.+|.+...+..+..+.+|++|++++|... .++.- +..+..++.+..++|
T Consensus        80 i~-~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~-i~~lt~~~~~~~s~N  147 (1081)
T KOG0618|consen   80 IR-SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLV-IEVLTAEEELAASNN  147 (1081)
T ss_pred             Hh-hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC-CCchh-HHhhhHHHHHhhhcc
Confidence            87 7777788888888888888888777777777888888888888776 44544 667777777777777

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.97  E-value=3.3e-36  Score=276.41  Aligned_cols=462  Identities=27%  Similarity=0.330  Sum_probs=358.2

Q ss_pred             eecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCcc
Q 043523            2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNF   81 (650)
Q Consensus         2 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l   81 (650)
                      |++++|.+. ..|.+++++..+..++.++|++ ...++.+..+..++.++.+.|.+. .+++.++.+..|+.++..+|++
T Consensus        73 l~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l-s~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i  149 (565)
T KOG0472|consen   73 LNVHDNKLS-QLPAAIGELEALKSLNVSHNKL-SELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQI  149 (565)
T ss_pred             EEeccchhh-hCCHHHHHHHHHHHhhcccchH-hhccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcccccc
Confidence            678888888 7888999999999999999998 566778888999999999999998 8899999999999999999999


Q ss_pred             ccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhc
Q 043523           82 TGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSL  161 (650)
Q Consensus        82 ~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  161 (650)
                      + ..|.++..+.+|..+++.+|++...++....+..|+++|...|.+. .++.+ ++++.+|+-|++.+|++. ..| .|
T Consensus       150 ~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~-lg~l~~L~~LyL~~Nki~-~lP-ef  224 (565)
T KOG0472|consen  150 S-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPE-LGGLESLELLYLRRNKIR-FLP-EF  224 (565)
T ss_pred             c-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChh-hcchhhhHHHHhhhcccc-cCC-CC
Confidence            9 8899999999999999999999999998777999999999999987 67777 899999999999999998 455 89


Q ss_pred             cCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCC
Q 043523          162 FLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIP  241 (650)
Q Consensus       162 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~  241 (650)
                      ..+..|+++.+..|++. ..+......+.++..||+.+|++. ++|..+ +.+.+|+.||+++|.++.+...        
T Consensus       225 ~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~-clLrsL~rLDlSNN~is~Lp~s--------  293 (565)
T KOG0472|consen  225 PGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI-CLLRSLERLDLSNNDISSLPYS--------  293 (565)
T ss_pred             CccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHH-HHhhhhhhhcccCCccccCCcc--------
Confidence            99999999999999988 566666667899999999999999 899988 7899999999999998744322        


Q ss_pred             CCCCCCCCcEEEccCCcCCCCCChhHHhhc-CcccceeeeccccccCCcCcccCCcccEEEeccCc-CCCCCC--CCCCC
Q 043523          242 ILKNQSQLSGLDISNNQIPGEIPNWIWEVG-NGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQ-LRGNIP--HMSTN  317 (650)
Q Consensus       242 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~-~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~-l~~~~~--~~~~~  317 (650)
                       ++++ +|+.|-+.||.+.+ +-..+...+ ..-|++|.=   .+++-    ++..=+.-..+.-. ..+..+  ....+
T Consensus       294 -Lgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs---~~~~d----glS~se~~~e~~~t~~~~~~~~~~~~i~  363 (565)
T KOG0472|consen  294 -LGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRS---KIKDD----GLSQSEGGTETAMTLPSESFPDIYAIIT  363 (565)
T ss_pred             -cccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHH---hhccC----CCCCCcccccccCCCCCCcccchhhhhh
Confidence             7777 89999999998752 222221111 111222211   00000    00000000000000 000001  12346


Q ss_pred             ccEEecCCCcCCCCchhhhhccC--CccEEEccCCcccccccccccCCCcccE-EECcCccccccCChhhhhccccCccE
Q 043523          318 TSYVDYSNNHFTFIPADIGNFMS--ETEYFFAANNSLVGVIPESVCKGIYFQV-LDLSNNNLSGTIPACLIAQSETTLGV  394 (650)
Q Consensus       318 L~~L~l~~~~i~~~~~~~~~~~~--~l~~l~l~~~~~~~~~~~~l~~~~~L~~-L~l~~~~~~~~~~~~~~~~~~~~L~~  394 (650)
                      .+.|++++-+++.+|+.+|..-.  -...++++.|++. ++|..+..++.+.+ +.+++|.+. -+|..+...  ++|+.
T Consensus       364 tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l--~kLt~  439 (565)
T KOG0472|consen  364 TKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQL--QKLTF  439 (565)
T ss_pred             hhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhh--hccee
Confidence            77888889899999998887432  3678889988877 56766666666554 445555443 444444443  38999


Q ss_pred             EEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcc
Q 043523          395 LNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNN  474 (650)
Q Consensus       395 L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~  474 (650)
                      |++++|-+- .+|.+ +..+..|+.|+++.|++. ..|+.+..+..++.+-.++|++..+.+..+.+|.+|++|++.+|.
T Consensus       440 L~L~NN~Ln-~LP~e-~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd  516 (565)
T KOG0472|consen  440 LDLSNNLLN-DLPEE-MGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND  516 (565)
T ss_pred             eecccchhh-hcchh-hhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc
Confidence            999998766 66666 667778999999999988 788888888888888888999999888889999999999999999


Q ss_pred             cceecCCCCCCCCCCCCCeeeCCCcccc
Q 043523          475 FSGHISCPRNNVSWPLLQIVDLASNKFS  502 (650)
Q Consensus       475 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~  502 (650)
                      +..   +++.++++++|++|++.+|+|-
T Consensus       517 lq~---IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  517 LQQ---IPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhh---CChhhccccceeEEEecCCccC
Confidence            874   3888999999999999999986

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=2.5e-33  Score=283.85  Aligned_cols=478  Identities=26%  Similarity=0.311  Sum_probs=368.3

Q ss_pred             eecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCcc
Q 043523            2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNF   81 (650)
Q Consensus         2 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l   81 (650)
                      |++..|.+....-+.+.+.-+|+.||+++|++ ...+..+..+++|+.|.++.|-+. ..|.+..++.+|+++.|.+|.+
T Consensus        26 ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l  103 (1081)
T KOG0618|consen   26 LNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRL  103 (1081)
T ss_pred             hhccccccccCchHHhhheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchh
Confidence            56666766543344455666699999999998 556667888999999999999998 7889999999999999999999


Q ss_pred             ccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhc
Q 043523           82 TGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSL  161 (650)
Q Consensus        82 ~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  161 (650)
                      . .+|..+..+++|++|+++.|++...+.-+..+..+..+..++|.....     ++... ++.+++..+.+....+.+.
T Consensus       104 ~-~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~-----lg~~~-ik~~~l~~n~l~~~~~~~i  176 (1081)
T KOG0618|consen  104 Q-SLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQR-----LGQTS-IKKLDLRLNVLGGSFLIDI  176 (1081)
T ss_pred             h-cCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhh-----hcccc-chhhhhhhhhcccchhcch
Confidence            8 899999999999999999999998888888999999999999932211     22222 7788888887777766666


Q ss_pred             cCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCC
Q 043523          162 FLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIP  241 (650)
Q Consensus       162 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~  241 (650)
                      ..+..  .+++++|.+.    ......+..|+.+....|++. .+.    -.-++++.|..+.|.++....         
T Consensus       177 ~~l~~--~ldLr~N~~~----~~dls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~---------  236 (1081)
T KOG0618|consen  177 YNLTH--QLDLRYNEME----VLDLSNLANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDV---------  236 (1081)
T ss_pred             hhhhe--eeecccchhh----hhhhhhccchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeecc---------
Confidence            66655  6888888775    122234567777777777665 222    234678888888887763221         


Q ss_pred             CCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCccc-CCcccEEEeccCcCCCCCCC--CCCCc
Q 043523          242 ILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYS-ISSIRLLDLHSNQLRGNIPH--MSTNT  318 (650)
Q Consensus       242 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~-l~~L~~L~l~~~~l~~~~~~--~~~~L  318 (650)
                       -....+++.++++.+.+. ..|+|+..+..  ++.+....|.+..++.... ..+|+.+.+..|.+....+.  ....+
T Consensus       237 -~p~p~nl~~~dis~n~l~-~lp~wi~~~~n--le~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL  312 (1081)
T KOG0618|consen  237 -HPVPLNLQYLDISHNNLS-NLPEWIGACAN--LEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSL  312 (1081)
T ss_pred             -ccccccceeeecchhhhh-cchHHHHhccc--ceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCccccccee
Confidence             223457899999999887 77788887665  9999999998887765543 67888888888887654443  35788


Q ss_pred             cEEecCCCcCCCCchhhhhccCC-ccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEc
Q 043523          319 SYVDYSNNHFTFIPADIGNFMSE-TEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNL  397 (650)
Q Consensus       319 ~~L~l~~~~i~~~~~~~~~~~~~-l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  397 (650)
                      ++|++..|++..+|+.++.-... ++.+..+.+.+.......=...+.|+.|++.+|.+++...+.+....  +|+.|++
T Consensus       313 ~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~--hLKVLhL  390 (1081)
T KOG0618|consen  313 RTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK--HLKVLHL  390 (1081)
T ss_pred             eeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc--ceeeeee
Confidence            89999999999888877664444 66666666655533222223456799999999999987777776665  9999999


Q ss_pred             cCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccce
Q 043523          398 GRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSG  477 (650)
Q Consensus       398 ~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~  477 (650)
                      ++|++. ++|+..+..+..|++|++|||+++ .+|..+..++.|+.|...+|++.. .| .+..++.|+.++++.|.+..
T Consensus       391 syNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  391 SYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             cccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhh
Confidence            999988 888888999999999999999999 778999999999999999999987 66 68899999999999999987


Q ss_pred             ecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhc
Q 043523          478 HISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAET  521 (650)
Q Consensus       478 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~  521 (650)
                      ..  ......+++|++||+++|... ......++.+..+...+.
T Consensus       467 ~~--l~~~~p~p~LkyLdlSGN~~l-~~d~~~l~~l~~l~~~~i  507 (1081)
T KOG0618|consen  467 VT--LPEALPSPNLKYLDLSGNTRL-VFDHKTLKVLKSLSQMDI  507 (1081)
T ss_pred             hh--hhhhCCCcccceeeccCCccc-ccchhhhHHhhhhhheec
Confidence            65  555666799999999999863 344445555555444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=2.3e-31  Score=257.92  Aligned_cols=181  Identities=26%  Similarity=0.362  Sum_probs=126.0

Q ss_pred             ccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhc
Q 043523          356 IPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSL  435 (650)
Q Consensus       356 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~  435 (650)
                      +|.++..+.+|..+|++.|++. .+|+++                           ..+.+|+.|++|+|+|+ .+....
T Consensus       214 ~Ptsld~l~NL~dvDlS~N~Lp-~vPecl---------------------------y~l~~LrrLNLS~N~it-eL~~~~  264 (1255)
T KOG0444|consen  214 IPTSLDDLHNLRDVDLSENNLP-IVPECL---------------------------YKLRNLRRLNLSGNKIT-ELNMTE  264 (1255)
T ss_pred             CCCchhhhhhhhhccccccCCC-cchHHH---------------------------hhhhhhheeccCcCcee-eeeccH
Confidence            4445556666777777777665 445443                           33445666666666665 333334


Q ss_pred             ccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHh
Q 043523          436 ANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEE  515 (650)
Q Consensus       436 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~  515 (650)
                      ..-.+|+.|++|.|+++. .|.+++.+++|++|++.+|+++ ..+++..+.++.+|+++..++|.+.             
T Consensus       265 ~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~-FeGiPSGIGKL~~Levf~aanN~LE-------------  329 (1255)
T KOG0444|consen  265 GEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLT-FEGIPSGIGKLIQLEVFHAANNKLE-------------  329 (1255)
T ss_pred             HHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCccc-ccCCccchhhhhhhHHHHhhccccc-------------
Confidence            445677888888888876 7778888888888888888875 3345667777777777777776542             


Q ss_pred             hHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCcccc
Q 043523          516 MMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNA  595 (650)
Q Consensus       516 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~  595 (650)
                                                                                 ..|+.+++|.+|+.|+|+.|+
T Consensus       330 -----------------------------------------------------------lVPEglcRC~kL~kL~L~~Nr  350 (1255)
T KOG0444|consen  330 -----------------------------------------------------------LVPEGLCRCVKLQKLKLDHNR  350 (1255)
T ss_pred             -----------------------------------------------------------cCchhhhhhHHHHHhcccccc
Confidence                                                                       677889999999999999998


Q ss_pred             CcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEcc
Q 043523          596 LTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLS  640 (650)
Q Consensus       596 i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  640 (650)
                      +. ..|+++.-++.|++||+.+|.-..-+|.-=..-++|+..++.
T Consensus       351 Li-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  351 LI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             ee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence            88 789999999999999999997765555433333556655554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=1.4e-30  Score=252.61  Aligned_cols=363  Identities=25%  Similarity=0.329  Sum_probs=196.6

Q ss_pred             CCCCCEEeCCCCCCCC-CCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEE
Q 043523           20 VPTLETLDLSENQLLQ-GSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHM   98 (650)
Q Consensus        20 ~~~L~~L~ls~~~i~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L   98 (650)
                      ++..|-+|+++|.+.. ..+.....+..++.|.|.+.++. .+|+.++.+.+|++|.+++|++. .+...+..++.|+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence            4556667777777652 23334455667777777777666 66777777777777777777776 455566677777777


Q ss_pred             EccCCcc--cccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCc
Q 043523           99 DFSSNHF--SGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQ  176 (650)
Q Consensus        99 ~l~~~~i--~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  176 (650)
                      .+.+|++  .++++.++++..|+.||+++|.+. ..+.. +.+-+++-+|++++|+|..+....+.++..|-.||+++|+
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~-LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTN-LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcchh-hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence            7777755  346667777777777777777766 45555 5666666666666666664443444445555555555554


Q ss_pred             CCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccC
Q 043523          177 FENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISN  256 (650)
Q Consensus       177 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~  256 (650)
                                               +. .+|..+ ..+.+|+.|.+++|++....+.        .+..++.|++|.+++
T Consensus       162 -------------------------Le-~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLr--------QLPsmtsL~vLhms~  206 (1255)
T KOG0444|consen  162 -------------------------LE-MLPPQI-RRLSMLQTLKLSNNPLNHFQLR--------QLPSMTSLSVLHMSN  206 (1255)
T ss_pred             -------------------------hh-hcCHHH-HHHhhhhhhhcCCChhhHHHHh--------cCccchhhhhhhccc
Confidence                                     44 566655 5677777777777776643221        144556677777776


Q ss_pred             CcCC-CCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhh
Q 043523          257 NQIP-GEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADI  335 (650)
Q Consensus       257 ~~i~-~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~  335 (650)
                      .+-+ ..+|..+-...+  |..++++.|.+..+|                                           ..+
T Consensus       207 TqRTl~N~Ptsld~l~N--L~dvDlS~N~Lp~vP-------------------------------------------ecl  241 (1255)
T KOG0444|consen  207 TQRTLDNIPTSLDDLHN--LRDVDLSENNLPIVP-------------------------------------------ECL  241 (1255)
T ss_pred             ccchhhcCCCchhhhhh--hhhccccccCCCcch-------------------------------------------HHH
Confidence            5422 234443333222  333333333333333                                           222


Q ss_pred             hhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCc-CCCcccCCC
Q 043523          336 GNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGT-LSDTIFPRN  414 (650)
Q Consensus       336 ~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~l  414 (650)
                      .. .++|+.|++++|.++. +......-.+|++|+++.|+++ .+|.+.....  +|+.|++.+|++.=+ +|.. ++.+
T Consensus       242 y~-l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~--kL~kLy~n~NkL~FeGiPSG-IGKL  315 (1255)
T KOG0444|consen  242 YK-LRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT--KLTKLYANNNKLTFEGIPSG-IGKL  315 (1255)
T ss_pred             hh-hhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhH--HHHHHHhccCcccccCCccc-hhhh
Confidence            21 2222222222222221 1111222235566666666655 5555554433  555555555554422 2222 4444


Q ss_pred             CCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcc
Q 043523          415 CGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNN  474 (650)
Q Consensus       415 ~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~  474 (650)
                      .+|+++..++|.+. ..|+++..|..|+.|.|+.|++.. .|+.+.-++.|+.|++..|+
T Consensus       316 ~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  316 IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             hhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCc
Confidence            45555555555544 445555555555555555555444 44444445555555555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=1e-27  Score=220.49  Aligned_cols=440  Identities=19%  Similarity=0.179  Sum_probs=283.5

Q ss_pred             EccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccC-CcC
Q 043523           99 DFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSN-NQF  177 (650)
Q Consensus        99 ~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~  177 (650)
                      +.++-.++++|..+-  +....++|..|.|+ .++...|+.+++|+.+++++|+|+.+.|++|..++++..|.+.+ |.|
T Consensus        52 dCr~~GL~eVP~~LP--~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   52 DCRGKGLTEVPANLP--PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             EccCCCcccCcccCC--CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            334444444443322  56778888899888 55665589999999999999999988999999999888888777 677


Q ss_pred             CCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCC
Q 043523          178 ENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNN  257 (650)
Q Consensus       178 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~  257 (650)
                      + .++...+..+..++.|.+.-|++. .++...|..++++..|.+..|.+..+....        +.....++.+.+..|
T Consensus       129 ~-~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~t--------f~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  129 T-DLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGT--------FQGLAAIKTLHLAQN  198 (498)
T ss_pred             h-hhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhcccc--------ccchhccchHhhhcC
Confidence            6 556666666777888888888877 677777888888888888888776543322        555566666666665


Q ss_pred             cCCCC-CChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhh
Q 043523          258 QIPGE-IPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIG  336 (650)
Q Consensus       258 ~i~~~-~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~  336 (650)
                      .+... -..|....-                               ..+.                              
T Consensus       199 p~icdCnL~wla~~~-------------------------------a~~~------------------------------  217 (498)
T KOG4237|consen  199 PFICDCNLPWLADDL-------------------------------AMNP------------------------------  217 (498)
T ss_pred             ccccccccchhhhHH-------------------------------hhch------------------------------
Confidence            53211 111111100                               0000                              


Q ss_pred             hccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCC
Q 043523          337 NFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCG  416 (650)
Q Consensus       337 ~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~  416 (650)
                                           ..+++........+.+..+..+-+..+.... ..+..-..+.|.+.+..|...|..+++
T Consensus       218 ---------------------ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~-esl~s~~~~~d~~d~~cP~~cf~~L~~  275 (498)
T KOG4237|consen  218 ---------------------IETSGARCVSPYRLYYKRINQEDARKFLCSL-ESLPSRLSSEDFPDSICPAKCFKKLPN  275 (498)
T ss_pred             ---------------------hhcccceecchHHHHHHHhcccchhhhhhhH-HhHHHhhccccCcCCcChHHHHhhccc
Confidence                                 0000000011111111111111111111110 022222223344444566667999999


Q ss_pred             ccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeC
Q 043523          417 LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDL  496 (650)
Q Consensus       417 L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  496 (650)
                      |+.|++++|+++++-+.+|++..++++|.|..|++..+....|.++..|++|+|.+|+|+...  +..+....+|.+|++
T Consensus       276 L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~--~~aF~~~~~l~~l~l  353 (498)
T KOG4237|consen  276 LRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA--PGAFQTLFSLSTLNL  353 (498)
T ss_pred             ceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe--cccccccceeeeeeh
Confidence            999999999999999999999999999999999999988889999999999999999999887  888999999999999


Q ss_pred             CCcccccccChHHHHhHHhhHhhhcc-cC---cccccceeeccCCceeecceEEee-ccchhhcccCCCcccEEeCCCCc
Q 043523          497 ASNKFSGRLSQKWLLTMEEMMVAETK-SG---SELKHLRYVISSNQFYEVGVTVTV-KGVETMLLKVPNIFTSIDFSSNN  571 (650)
Q Consensus       497 ~~n~~~~~~~~~~~~~l~~l~~~~~~-~~---~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~  571 (650)
                      -.|++.|.+...|+..|.+-...... -+   ..++.++......+......+... .......-..++.+...--.+|+
T Consensus       354 ~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk  433 (498)
T KOG4237|consen  354 LSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNK  433 (498)
T ss_pred             ccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhccc
Confidence            99999999999999998775442111 11   122333333322222211111111 11111111223333333333333


Q ss_pred             cccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCC
Q 043523          572 FEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN  642 (650)
Q Consensus       572 ~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  642 (650)
                      .....+..+.  ..-.++++.+|.++ .+|..  .+.+| .+|+++|+++...-..|.++++|.+|-|++|
T Consensus       434 ~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  434 LLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             chhhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            3334444343  36678889999888 55554  56778 8899999998887788899999999988876

>PLN03210 Resistant to P

Probab=99.90  E-value=9.5e-22  Score=223.93  Aligned_cols=347  Identities=21%  Similarity=0.204  Sum_probs=263.1

Q ss_pred             cccccccCCCCCCEEeCCCCCCC------CCCCCCCCCC-CcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccC
Q 043523           12 KFPEKILQVPTLETLDLSENQLL------QGSLPNFPKN-SSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGP   84 (650)
Q Consensus        12 ~~~~~~~~~~~L~~L~ls~~~i~------~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~   84 (650)
                      ..+.+|..+++|+.|.+.++...      ...++.|..+ ++|+.|.+.++.+. .+|..+ ...+|+.|++.++.+. .
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence            34567999999999999766431      1223345444 46999999999887 777777 5789999999999988 6


Q ss_pred             CCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCC
Q 043523           85 IPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLL  164 (650)
Q Consensus        85 ~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l  164 (650)
                      ++..+..+++|+.|+++++......+.+..+++|++|++++|.....++.. +.++++|+.|++++|..-...|..+ .+
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            788888999999999998754445567788899999999998765567766 7899999999999875444555544 68


Q ss_pred             CCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCC-C
Q 043523          165 PNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPI-L  243 (650)
Q Consensus       165 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-l  243 (650)
                      ++|+.|++++|.....++.    ...+|+.|+++++.+. .+|..+  .+++|+.|.+.++....+.....  ...+. .
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~--~l~~~~~  774 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQ--PLTPLMT  774 (1153)
T ss_pred             CCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccc--cccccccccccccchhhcccccc--ccchhhh
Confidence            8999999999865444443    2467999999999887 677544  57888888888765432221110  00011 2


Q ss_pred             CCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccc-cccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEe
Q 043523          244 KNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHN-LLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVD  322 (650)
Q Consensus       244 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~  322 (650)
                      ..+++|+.|++++|.....+|.++..+.  +|+.|++++| .+..+|....+++|+.|++++|......+....+++.|+
T Consensus       775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~--~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~  852 (1153)
T PLN03210        775 MLSPSLTRLFLSDIPSLVELPSSIQNLH--KLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLN  852 (1153)
T ss_pred             hccccchheeCCCCCCccccChhhhCCC--CCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeE
Confidence            3457899999999987778898876554  5999999998 688888777889999999999977666666678899999


Q ss_pred             cCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCcc
Q 043523          323 YSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNN  375 (650)
Q Consensus       323 l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  375 (650)
                      +++|.++.+|..+.. +++|+.+++++|.-...+|..+..+++|+.+++++|.
T Consensus       853 Ls~n~i~~iP~si~~-l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        853 LSRTGIEEVPWWIEK-FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCCccChHHHhc-CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            999999988877654 7888888888876665677777778888888888875

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=1.3e-21  Score=222.81  Aligned_cols=159  Identities=21%  Similarity=0.224  Sum_probs=110.7

Q ss_pred             CCCCCCCCCcccEEEccCCc------CcCCCCCCCCCCC-CCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccC
Q 043523           37 SLPNFPKNSSLRNLILSGTG------FSGTLPDSIGNLE-NLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHI  109 (650)
Q Consensus        37 ~~~~~~~l~~L~~L~L~~~~------~~~~~~~~~~~l~-~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~  109 (650)
                      ...+|.++++|+.|.+..+.      +...+|..+..++ +|++|.+.++.+. .+|..| ...+|+.|++.++++...+
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~  627 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLW  627 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccc
Confidence            33468888899998886543      2234666777764 5889999888887 677776 4688889999888888777


Q ss_pred             CccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhcCC
Q 043523          110 PSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSS  189 (650)
Q Consensus       110 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  189 (650)
                      .++..+++|+.|+++++.....++.  ++.+++|+.|++++|......|..+..+++|+.|++++|.....++...  .+
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l  703 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NL  703 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CC
Confidence            7777888888888887754334443  6778888888888876555667777777888888887764332333211  34


Q ss_pred             CCccEEEccCCc
Q 043523          190 SVLFDLDLSGNR  201 (650)
Q Consensus       190 ~~L~~L~l~~~~  201 (650)
                      ++|+.|++++|.
T Consensus       704 ~sL~~L~Lsgc~  715 (1153)
T PLN03210        704 KSLYRLNLSGCS  715 (1153)
T ss_pred             CCCCEEeCCCCC
Confidence            555555555554

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=2.1e-23  Score=192.37  Aligned_cols=293  Identities=23%  Similarity=0.219  Sum_probs=184.1

Q ss_pred             EEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccC
Q 043523          320 YVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGR  399 (650)
Q Consensus       320 ~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  399 (650)
                      .++.++-.++.+|.++   ++...++++..|.|..+.+..|..+++|+.|||++|.|+...|.+                
T Consensus        50 ~VdCr~~GL~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A----------------  110 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA----------------  110 (498)
T ss_pred             eEEccCCCcccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHh----------------
Confidence            4555566666676665   455566666666666555566666666666666666665444433                


Q ss_pred             ccCCCcCCCcccCCCCCccEEEcCC-CccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCccccee
Q 043523          400 NNLNGTLSDTIFPRNCGLQILDLGG-NQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGH  478 (650)
Q Consensus       400 ~~~~~~~~~~~~~~l~~L~~L~ls~-~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  478 (650)
                                 |.+++++..|-+.+ |+|++....+|.++.+|+.|.+.-|++.-+....|..+++|..|.+..|.+...
T Consensus       111 -----------F~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i  179 (498)
T KOG4237|consen  111 -----------FKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSI  179 (498)
T ss_pred             -----------hhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhh
Confidence                       44444444444433 455544444555555555555555555555555555555555555555555433


Q ss_pred             cCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccc--cceeeccCC-----------ce-eecce
Q 043523          479 ISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELK--HLRYVISSN-----------QF-YEVGV  544 (650)
Q Consensus       479 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~l~~~~~~~-----------~~-~~~~~  544 (650)
                      .  ...+....+++.+++..|++.+.+...|+.+.......+........  .+++.....           ++ .....
T Consensus       180 ~--~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~  257 (498)
T KOG4237|consen  180 C--KGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSS  257 (498)
T ss_pred             c--cccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcc
Confidence            2  33455555566666666666666666666555443333333221111  111100000           00 00000


Q ss_pred             EE-eeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCcc
Q 043523          545 TV-TVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK  623 (650)
Q Consensus       545 ~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~  623 (650)
                      .+ .........+...+.|+.|++++|+++++...+|.+...+++|.|..|+|..+....|.++..|+.|++++|+|+..
T Consensus       258 ~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~  337 (498)
T KOG4237|consen  258 EDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV  337 (498)
T ss_pred             ccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE
Confidence            01 11112234478899999999999999999999999999999999999999988889999999999999999999999


Q ss_pred             CCccccCCCCCCeEEccCCcC
Q 043523          624 IPAQLASLNFLSVLNLSYNNL  644 (650)
Q Consensus       624 ~~~~l~~l~~L~~L~l~~n~~  644 (650)
                      .|..|..+.+|.+|++-.||+
T Consensus       338 ~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  338 APGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             ecccccccceeeeeehccCcc
Confidence            999999999999999999986

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.82  E-value=1.8e-19  Score=189.93  Aligned_cols=265  Identities=23%  Similarity=0.253  Sum_probs=149.0

Q ss_pred             cceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccc
Q 043523          275 LNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVG  354 (650)
Q Consensus       275 L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~  354 (650)
                      -..|+++.+.++.+|... .++++.|++.+|.++. .+..+++|++|++++|+++.+|..    ++.|+.|++.+|.+..
T Consensus       203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~  276 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTH  276 (788)
T ss_pred             CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCcccCc----ccccceeeccCCchhh
Confidence            344555555555554422 1345555555555543 233345566666666666655432    3456666666665542


Q ss_pred             cccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchh
Q 043523          355 VIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKS  434 (650)
Q Consensus       355 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~  434 (650)
                       +|..   ..+|+.|++++|.+. .+|..     .++|+.|++++|++. .++..    ..+|+.|++++|.+++ +|..
T Consensus       277 -Lp~l---p~~L~~L~Ls~N~Lt-~LP~~-----p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~-LP~l  340 (788)
T PRK15387        277 -LPAL---PSGLCKLWIFGNQLT-SLPVL-----PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS-LPTL  340 (788)
T ss_pred             -hhhc---hhhcCEEECcCCccc-ccccc-----ccccceeECCCCccc-cCCCC----cccccccccccCcccc-cccc
Confidence             2211   134666666666665 33321     126777777777666 33331    1246667777777763 3321


Q ss_pred             cccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHH
Q 043523          435 LANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTME  514 (650)
Q Consensus       435 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~  514 (650)
                         ..+|++|+|++|++.. +|..   .++|+.|++++|.+...   +..   .++|+.|++++|+++. .+.       
T Consensus       341 ---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~L---P~l---~~~L~~LdLs~N~Lt~-LP~-------  399 (788)
T PRK15387        341 ---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSL---PAL---PSGLKELIVSGNRLTS-LPV-------  399 (788)
T ss_pred             ---ccccceEecCCCccCC-CCCC---CcccceehhhccccccC---ccc---ccccceEEecCCcccC-CCC-------
Confidence               2467777777777776 3322   35667777777776532   221   2456777777776541 110       


Q ss_pred             hhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccc
Q 043523          515 EMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHN  594 (650)
Q Consensus       515 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n  594 (650)
                                                                 .++.|+.|++++|.++.+. ..   ..+|+.|++++|
T Consensus       400 -------------------------------------------l~s~L~~LdLS~N~LssIP-~l---~~~L~~L~Ls~N  432 (788)
T PRK15387        400 -------------------------------------------LPSELKELMVSGNRLTSLP-ML---PSGLLSLSVYRN  432 (788)
T ss_pred             -------------------------------------------cccCCCEEEccCCcCCCCC-cc---hhhhhhhhhccC
Confidence                                                       1345667777777776432 22   246677777777


Q ss_pred             cCcccCCcCccCCCCCCeeeCCCCcCCccCCccccC
Q 043523          595 ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS  630 (650)
Q Consensus       595 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~  630 (650)
                      +++ .+|..+..+++|+.|++++|++++..+..+..
T Consensus       433 qLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        433 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             ccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            777 56777777777777777777777666655533

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=3.1e-19  Score=188.17  Aligned_cols=263  Identities=24%  Similarity=0.333  Sum_probs=180.5

Q ss_pred             CcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcC
Q 043523          249 LSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHF  328 (650)
Q Consensus       249 L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i  328 (650)
                      -..|+++++.+. .+|..+.    .+++.|.+.+|.++.+|..  +++|++|++++|+++.. +..+++|+.|++++|++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~----~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsL-P~lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPL  274 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh----cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcc-cCcccccceeeccCCch
Confidence            445666666665 4555443    2466677776666666542  46677777777766643 44456777777777777


Q ss_pred             CCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCC
Q 043523          329 TFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSD  408 (650)
Q Consensus       329 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  408 (650)
                      +.++..    +..|+.|++++|.+... |.   ..++|+.|++++|.+.+ +|..     ...|+.|++++|.+. .+|.
T Consensus       275 ~~Lp~l----p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-Lp~l-----p~~L~~L~Ls~N~L~-~LP~  339 (788)
T PRK15387        275 THLPAL----PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPAL-----PSELCKLWAYNNQLT-SLPT  339 (788)
T ss_pred             hhhhhc----hhhcCEEECcCCccccc-cc---cccccceeECCCCcccc-CCCC-----cccccccccccCccc-cccc
Confidence            765542    45677777777776643 32   23568888888887763 3331     126888888888877 4443


Q ss_pred             cccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCC
Q 043523          409 TIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSW  488 (650)
Q Consensus       409 ~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  488 (650)
                        +.  .+|+.|++++|+++. +|..   ..+|+.|++++|++.. +|..   ..+|+.|++++|+++..   +..   .
T Consensus       340 --lp--~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~L---P~l---~  401 (788)
T PRK15387        340 --LP--SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSL---PVL---P  401 (788)
T ss_pred             --cc--cccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCC---CCc---c
Confidence              21  478999999999884 4432   3578889999999886 4432   46799999999988743   222   3


Q ss_pred             CCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCC
Q 043523          489 PLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFS  568 (650)
Q Consensus       489 ~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~  568 (650)
                      ++|+.|++++|.+.. ++.                                                  .+..|+.|+++
T Consensus       402 s~L~~LdLS~N~Lss-IP~--------------------------------------------------l~~~L~~L~Ls  430 (788)
T PRK15387        402 SELKELMVSGNRLTS-LPM--------------------------------------------------LPSGLLSLSVY  430 (788)
T ss_pred             cCCCEEEccCCcCCC-CCc--------------------------------------------------chhhhhhhhhc
Confidence            679999999998752 111                                                  23456789999


Q ss_pred             CCccccCCCccccCCcCCCEEeCccccCcccCCcCc
Q 043523          569 SNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSF  604 (650)
Q Consensus       569 ~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~  604 (650)
                      +|.++ .+|..+..+++|+.|+|++|++++..+..+
T Consensus       431 ~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        431 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             cCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            99998 456778899999999999999998766655

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=5.2e-18  Score=180.30  Aligned_cols=180  Identities=26%  Similarity=0.344  Sum_probs=72.0

Q ss_pred             cceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccc
Q 043523          275 LNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVG  354 (650)
Q Consensus       275 L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~  354 (650)
                      ...|+++++.++.+|... .+.++.|++++|.+.......+.+|+.|++++|+++.+|..+   ...++.+++++|.+. 
T Consensus       180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~-  254 (754)
T PRK15370        180 KTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATL---PDTIQEMELSINRIT-  254 (754)
T ss_pred             ceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhh---hccccEEECcCCccC-
Confidence            334444444444433211 123444444444444332223334444444444444444332   223444444444443 


Q ss_pred             cccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchh
Q 043523          355 VIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKS  434 (650)
Q Consensus       355 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~  434 (650)
                      .+|..+.  .+|+.|++++|.+. .+|..+.    .+|++|++++|++. .++.. +.  .+|+.|++++|.++. +|..
T Consensus       255 ~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~----~sL~~L~Ls~N~Lt-~LP~~-lp--~sL~~L~Ls~N~Lt~-LP~~  322 (754)
T PRK15370        255 ELPERLP--SALQSLDLFHNKIS-CLPENLP----EELRYLSVYDNSIR-TLPAH-LP--SGITHLNVQSNSLTA-LPET  322 (754)
T ss_pred             cCChhHh--CCCCEEECcCCccC-ccccccC----CCCcEEECCCCccc-cCccc-ch--hhHHHHHhcCCcccc-CCcc
Confidence            2232221  23444444444443 2232221    14445555554444 22222 11  234445555554442 2222


Q ss_pred             cccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccc
Q 043523          435 LANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS  476 (650)
Q Consensus       435 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  476 (650)
                      +  .++|+.|++++|.+.. +|..+  +++|+.|++++|+++
T Consensus       323 l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~  359 (754)
T PRK15370        323 L--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT  359 (754)
T ss_pred             c--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC
Confidence            2  1345555555555444 22222  244555555555443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.74  E-value=1.4e-17  Score=177.15  Aligned_cols=159  Identities=22%  Similarity=0.347  Sum_probs=78.4

Q ss_pred             ccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccc
Q 043523          297 IRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNL  376 (650)
Q Consensus       297 L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  376 (650)
                      ...++++++.++......+..++.|++++|+++.+|..++   .+|+.|++++|.+.. +|..+.  .+|+.|++++|.+
T Consensus       180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L  253 (754)
T PRK15370        180 KTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRI  253 (754)
T ss_pred             ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEECcCCcc
Confidence            4556666666554433344566666666666666665442   356666666665542 333322  2455556665555


Q ss_pred             cccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccc
Q 043523          377 SGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFP  456 (650)
Q Consensus       377 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  456 (650)
                      . .+|..+.    .+|+.|++++|++. .++.. +.  ++|+.|++++|+++. +|..+.  ++|+.|++++|++.. .|
T Consensus       254 ~-~LP~~l~----s~L~~L~Ls~N~L~-~LP~~-l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP  320 (754)
T PRK15370        254 T-ELPERLP----SALQSLDLFHNKIS-CLPEN-LP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LP  320 (754)
T ss_pred             C-cCChhHh----CCCCEEECcCCccC-ccccc-cC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CC
Confidence            4 3443332    14555555555554 33332 11  245555555555552 232221  245555555555554 22


Q ss_pred             hhhhcCCCCCeEEccCcccc
Q 043523          457 CWLGNASSLQVLVLQSNNFS  476 (650)
Q Consensus       457 ~~~~~~~~L~~L~l~~n~~~  476 (650)
                      ..+  .++|++|++++|.++
T Consensus       321 ~~l--~~sL~~L~Ls~N~Lt  338 (754)
T PRK15370        321 ETL--PPGLKTLEAGENALT  338 (754)
T ss_pred             ccc--cccceeccccCCccc
Confidence            211  245555555555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=2e-18  Score=171.59  Aligned_cols=260  Identities=19%  Similarity=0.184  Sum_probs=158.8

Q ss_pred             cCCccEEEccCCccccc----ccccccCCCcccEEECcCccccc------cCChhhhhccccCccEEEccCccCCCcCCC
Q 043523          339 MSETEYFFAANNSLVGV----IPESVCKGIYFQVLDLSNNNLSG------TIPACLIAQSETTLGVLNLGRNNLNGTLSD  408 (650)
Q Consensus       339 ~~~l~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  408 (650)
                      ...++.+.+.++.+.+.    ++..+...++++.++++++.+..      .++..+..  .++|++|++++|.+.+..+.
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~   99 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK--GCGLQELDLSDNALGPDGCG   99 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh--cCceeEEEccCCCCChhHHH
Confidence            45566666666655332    23344455567777777665541      11122222  34777777777776532222


Q ss_pred             cccCCC---CCccEEEcCCCccccc----cchhcccC-CCCCEEeCCCCcccc----ccchhhhcCCCCCeEEccCcccc
Q 043523          409 TIFPRN---CGLQILDLGGNQLQGV----VPKSLANC-NMLQVLDLKNNHISD----NFPCWLGNASSLQVLVLQSNNFS  476 (650)
Q Consensus       409 ~~~~~l---~~L~~L~ls~~~i~~~----~~~~~~~l-~~L~~L~Ls~n~l~~----~~~~~~~~~~~L~~L~l~~n~~~  476 (650)
                      . +..+   ++|++|++++|++.+.    ...++..+ ++|++|++++|.+..    ..+..+..+++|++|++++|.+.
T Consensus       100 ~-~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         100 V-LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             H-HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            2 3333   3488888888876632    22344555 788888888888773    22344556778888888888776


Q ss_pred             eec--CCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhh
Q 043523          477 GHI--SCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETM  554 (650)
Q Consensus       477 ~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  554 (650)
                      +..  .+...+..+++|++|++++|.+.+.......                                           .
T Consensus       179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-------------------------------------------~  215 (319)
T cd00116         179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA-------------------------------------------E  215 (319)
T ss_pred             hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH-------------------------------------------H
Confidence            321  0122334456888888888876532111110                                           0


Q ss_pred             cccCCCcccEEeCCCCccccCCCcccc-----CCcCCCEEeCccccCcc----cCCcCccCCCCCCeeeCCCCcCCcc--
Q 043523          555 LLKVPNIFTSIDFSSNNFEGPIPEEMG-----RFKSLYALNMSHNALTG----SIPSSFGNLKQIESLDLSMNNLSGK--  623 (650)
Q Consensus       555 ~~~~~~~l~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~ls~n~i~~----~~~~~~~~l~~L~~L~l~~n~i~~~--  623 (650)
                      ....+++|++|++++|.+.+.....+.     ..+.|+.|++++|.+++    .....+..+++|+++++++|.++..  
T Consensus       216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~  295 (319)
T cd00116         216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA  295 (319)
T ss_pred             HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence            113467788888888887753332222     23799999999998873    2334556678999999999999854  


Q ss_pred             --CCccccCC-CCCCeEEccCCcC
Q 043523          624 --IPAQLASL-NFLSVLNLSYNNL  644 (650)
Q Consensus       624 --~~~~l~~l-~~L~~L~l~~n~~  644 (650)
                        ....+... +.|+.+++.+|++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         296 QLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHHhhcCCchhhcccCCCCC
Confidence              44556666 7899999998875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.67  E-value=1e-17  Score=166.49  Aligned_cols=260  Identities=25%  Similarity=0.237  Sum_probs=177.8

Q ss_pred             EEccCCccc-ccccccccCCCcccEEECcCccccccCChhhh--hccccCccEEEccCccCCC--c---CCCcccCCCCC
Q 043523          345 FFAANNSLV-GVIPESVCKGIYFQVLDLSNNNLSGTIPACLI--AQSETTLGVLNLGRNNLNG--T---LSDTIFPRNCG  416 (650)
Q Consensus       345 l~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~--~---~~~~~~~~l~~  416 (650)
                      +++..+.+. +.....+..+..|+.++++++.++......+.  ....+.+++++++++.+..  .   .....+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            444455554 23334555667799999999988643221121  1122369999999987652  1   01123667889


Q ss_pred             ccEEEcCCCccccccchhcccCCC---CCEEeCCCCcccccc----chhhhcC-CCCCeEEccCcccceec--CCCCCCC
Q 043523          417 LQILDLGGNQLQGVVPKSLANCNM---LQVLDLKNNHISDNF----PCWLGNA-SSLQVLVLQSNNFSGHI--SCPRNNV  486 (650)
Q Consensus       417 L~~L~ls~~~i~~~~~~~~~~l~~---L~~L~Ls~n~l~~~~----~~~~~~~-~~L~~L~l~~n~~~~~~--~~~~~~~  486 (650)
                      |+.|++++|.+....+..+..+..   |++|++++|++.+..    ...+..+ ++|++|++++|.++...  .+...+.
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  162 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR  162 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence            999999999987666666655555   999999999988422    2344556 89999999999987321  1234456


Q ss_pred             CCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEe
Q 043523          487 SWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSID  566 (650)
Q Consensus       487 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  566 (650)
                      .++.|++|++++|.+.+.........                                           ....+.|+.|+
T Consensus       163 ~~~~L~~L~l~~n~l~~~~~~~l~~~-------------------------------------------l~~~~~L~~L~  199 (319)
T cd00116         163 ANRDLKELNLANNGIGDAGIRALAEG-------------------------------------------LKANCNLEVLD  199 (319)
T ss_pred             hCCCcCEEECcCCCCchHHHHHHHHH-------------------------------------------HHhCCCCCEEe
Confidence            67889999999998764211111111                                           11347899999


Q ss_pred             CCCCccccCC----CccccCCcCCCEEeCccccCcccCCcCcc-----CCCCCCeeeCCCCcCCc----cCCccccCCCC
Q 043523          567 FSSNNFEGPI----PEEMGRFKSLYALNMSHNALTGSIPSSFG-----NLKQIESLDLSMNNLSG----KIPAQLASLNF  633 (650)
Q Consensus       567 l~~~~~~~~~----~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-----~l~~L~~L~l~~n~i~~----~~~~~l~~l~~  633 (650)
                      +++|.+.+..    ...+..+++|+.|++++|.+++.....+.     ..+.|+.|++++|.++.    ...+.+..+++
T Consensus       200 L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~  279 (319)
T cd00116         200 LNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES  279 (319)
T ss_pred             ccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC
Confidence            9999986443    34566788999999999999863333322     24799999999999973    24456777799


Q ss_pred             CCeEEccCCcCccc
Q 043523          634 LSVLNLSYNNLVGK  647 (650)
Q Consensus       634 L~~L~l~~n~~~~~  647 (650)
                      |+.+++++|.++.+
T Consensus       280 L~~l~l~~N~l~~~  293 (319)
T cd00116         280 LLELDLRGNKFGEE  293 (319)
T ss_pred             ccEEECCCCCCcHH
Confidence            99999999999853

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=1.1e-16  Score=130.96  Aligned_cols=163  Identities=25%  Similarity=0.359  Sum_probs=114.8

Q ss_pred             CCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcC
Q 043523           40 NFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLK  119 (650)
Q Consensus        40 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~  119 (650)
                      .+..+.+++.|.|++|+++ .+|..++.+.+|++|++.+|++. .+|..++.+++|++|+++-|++...+.+++.+|.|+
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le  105 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE  105 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence            3344566777788888877 66777788888888888888887 777778888888888888777776777788888888


Q ss_pred             EEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccC
Q 043523          120 YLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSG  199 (650)
Q Consensus       120 ~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  199 (650)
                      .||+.+|.+.+......|-.++.|+.|++++|.++ ..|..++.+.+|+.|.++.|.+.....++..  +..|++|.+.+
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~--lt~lrelhiqg  182 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGD--LTRLRELHIQG  182 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHH--HHHHHHHhccc
Confidence            88888777765444333667778888888888877 6677777788888887777766533333222  34456666666


Q ss_pred             CcCCCCCch
Q 043523          200 NRLEGPVPI  208 (650)
Q Consensus       200 ~~l~~~~~~  208 (650)
                      |+++ .+|.
T Consensus       183 nrl~-vlpp  190 (264)
T KOG0617|consen  183 NRLT-VLPP  190 (264)
T ss_pred             ceee-ecCh
Confidence            6655 4443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=1.6e-16  Score=129.88  Aligned_cols=162  Identities=25%  Similarity=0.354  Sum_probs=140.9

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEE
Q 043523           19 QVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHM   98 (650)
Q Consensus        19 ~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L   98 (650)
                      +....+.|-||+|++ ...++.++.+++|+.|++.+|.+. .+|.+++.++.|++|++.-|++. .+|..|+.++.|++|
T Consensus        31 ~~s~ITrLtLSHNKl-~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKL-TVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCce-eecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            456778889999998 456678999999999999999998 88999999999999999999998 899999999999999


Q ss_pred             EccCCcccc--cCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCc
Q 043523           99 DFSSNHFSG--HIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQ  176 (650)
Q Consensus        99 ~l~~~~i~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  176 (650)
                      |++.|++.+  .+..++.+..|+.|.+++|.+. .++.+ .+++++|+.|.+..|.+- ..|..++.+..|++|.+.+|+
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~d-vg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPD-VGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChh-hhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence            999998865  5557888899999999999886 66777 799999999999999888 678889999999999999999


Q ss_pred             CCCCCchhhh
Q 043523          177 FENQLPEISN  186 (650)
Q Consensus       177 ~~~~~~~~~~  186 (650)
                      ++...|+...
T Consensus       185 l~vlppel~~  194 (264)
T KOG0617|consen  185 LTVLPPELAN  194 (264)
T ss_pred             eeecChhhhh
Confidence            9866666543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=3.5e-12  Score=120.61  Aligned_cols=209  Identities=22%  Similarity=0.231  Sum_probs=144.2

Q ss_pred             cCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccc--cchhcccCCCCCEEeCCCCccccccch-hhhcCCCCC
Q 043523          390 TTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGV--VPKSLANCNMLQVLDLKNNHISDNFPC-WLGNASSLQ  466 (650)
Q Consensus       390 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~L~  466 (650)
                      .+|+.+.+.++.+...........|++++.||++.|-+..-  ...-.+++|+|+.|+|+.|++..-... .-..++.|+
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            47888888888765333324567788888888888865422  334456788888888888887752211 122478888


Q ss_pred             eEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEE
Q 043523          467 VLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTV  546 (650)
Q Consensus       467 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  546 (650)
                      +|.+++|.++.. .+...+..||+|+.|++.+|....                                           
T Consensus       201 ~L~l~~CGls~k-~V~~~~~~fPsl~~L~L~~N~~~~-------------------------------------------  236 (505)
T KOG3207|consen  201 QLVLNSCGLSWK-DVQWILLTFPSLEVLYLEANEIIL-------------------------------------------  236 (505)
T ss_pred             eEEeccCCCCHH-HHHHHHHhCCcHHHhhhhcccccc-------------------------------------------
Confidence            888888887622 124456678888888888884211                                           


Q ss_pred             eeccchhhcccCCCcccEEeCCCCccccCC-CccccCCcCCCEEeCccccCccc-CCcC-----ccCCCCCCeeeCCCCc
Q 043523          547 TVKGVETMLLKVPNIFTSIDFSSNNFEGPI-PEEMGRFKSLYALNMSHNALTGS-IPSS-----FGNLKQIESLDLSMNN  619 (650)
Q Consensus       547 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~~~~l~~L~~L~ls~n~i~~~-~~~~-----~~~l~~L~~L~l~~n~  619 (650)
                          +.....+.++.|+.|||++|.+.... ....+.++.|+.|+++.|.+.+. .|++     ...+++|++|++..|+
T Consensus       237 ----~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  237 ----IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             ----eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence                11122245777888999999887544 24677889999999999998863 3333     3567899999999999


Q ss_pred             CCcc-CCccccCCCCCCeEEccCCcCcc
Q 043523          620 LSGK-IPAQLASLNFLSVLNLSYNNLVG  646 (650)
Q Consensus       620 i~~~-~~~~l~~l~~L~~L~l~~n~~~~  646 (650)
                      |.+- .-..+..+++|+.|.+-.|+++.
T Consensus       313 I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  313 IRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cccccccchhhccchhhhhhcccccccc
Confidence            9642 23456677888888888888764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=2.1e-12  Score=122.00  Aligned_cols=212  Identities=19%  Similarity=0.157  Sum_probs=135.8

Q ss_pred             CCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCC-CcccCCCCCccEEEcCCCccccccch-hcccCC
Q 043523          362 KGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLS-DTIFPRNCGLQILDLGGNQLQGVVPK-SLANCN  439 (650)
Q Consensus       362 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~ls~~~i~~~~~~-~~~~l~  439 (650)
                      ++..|++..+.++.+...... -....++.++.||+++|-+..-.+ ......+++|+.|+++.|++..-..+ .-..++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            566788888888877533322 122223488999999886552111 12355678899999999887622211 122467


Q ss_pred             CCCEEeCCCCccccccc-hhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHh
Q 043523          440 MLQVLDLKNNHISDNFP-CWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMV  518 (650)
Q Consensus       440 ~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~  518 (650)
                      +|+.|.|+.|.+.--.. .....+|+|+.|++..|......  .....-+..|++|||++|++.+.....          
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~--~~~~~i~~~L~~LdLs~N~li~~~~~~----------  265 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK--ATSTKILQTLQELDLSNNNLIDFDQGY----------  265 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee--cchhhhhhHHhhccccCCccccccccc----------
Confidence            88899999998875332 23456899999999988532222  233444577888999888876432211          


Q ss_pred             hhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccc------cCCcCCCEEeCc
Q 043523          519 AETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEM------GRFKSLYALNMS  592 (650)
Q Consensus       519 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~------~~l~~L~~L~ls  592 (650)
                                                          ....+|.|+.|.++.+.+..+.....      ..+++|+.|++.
T Consensus       266 ------------------------------------~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~  309 (505)
T KOG3207|consen  266 ------------------------------------KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNIS  309 (505)
T ss_pred             ------------------------------------ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecc
Confidence                                                11356778888888888876544333      457889999999


Q ss_pred             cccCccc-CCcCccCCCCCCeeeCCCCcCCc
Q 043523          593 HNALTGS-IPSSFGNLKQIESLDLSMNNLSG  622 (650)
Q Consensus       593 ~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~  622 (650)
                      .|+|.+. .-..+..+++|+.|.+..|.+..
T Consensus       310 ~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  310 ENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cCccccccccchhhccchhhhhhcccccccc
Confidence            9988631 11334556777888888887764

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.21  E-value=2.2e-12  Score=118.54  Aligned_cols=88  Identities=23%  Similarity=0.332  Sum_probs=40.6

Q ss_pred             CCccEEEcCCCccccc----cchhcccCCCCCEEeCCCCccccc----cchhhhcCCCCCeEEccCcccceec--CCCCC
Q 043523          415 CGLQILDLGGNQLQGV----VPKSLANCNMLQVLDLKNNHISDN----FPCWLGNASSLQVLVLQSNNFSGHI--SCPRN  484 (650)
Q Consensus       415 ~~L~~L~ls~~~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~  484 (650)
                      +.|+++....|++...    +...|+.++.|+++.++.|.|..-    ....+..|+.|+.|+|+.|-++...  .+...
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            3455555555554322    223344455555555555544431    1223444555555555555554222  12344


Q ss_pred             CCCCCCCCeeeCCCcccc
Q 043523          485 NVSWPLLQIVDLASNKFS  502 (650)
Q Consensus       485 ~~~~~~L~~L~l~~n~~~  502 (650)
                      +..|++|++|++++|-+.
T Consensus       237 L~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             hcccchheeecccccccc
Confidence            445555555555555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.20  E-value=5.6e-13  Score=122.40  Aligned_cols=113  Identities=25%  Similarity=0.302  Sum_probs=63.7

Q ss_pred             cCccEEEccCccCCCcCC---CcccCCCCCccEEEcCCCccccc----cchhcccCCCCCEEeCCCCcccccc----chh
Q 043523          390 TTLGVLNLGRNNLNGTLS---DTIFPRNCGLQILDLGGNQLQGV----VPKSLANCNMLQVLDLKNNHISDNF----PCW  458 (650)
Q Consensus       390 ~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~ls~~~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~  458 (650)
                      +.|+++...+|.+.+...   ...|...+.|+.+.+.+|.|...    ...++..|++|++|||.+|-++...    ...
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            367777777776543221   12355666777777777765432    2345666777777777777665422    234


Q ss_pred             hhcCCCCCeEEccCcccceecC--CCC-CCCCCCCCCeeeCCCcccc
Q 043523          459 LGNASSLQVLVLQSNNFSGHIS--CPR-NNVSWPLLQIVDLASNKFS  502 (650)
Q Consensus       459 ~~~~~~L~~L~l~~n~~~~~~~--~~~-~~~~~~~L~~L~l~~n~~~  502 (650)
                      +...+.|+.|++++|.+.+...  +.. .-...|.|+++.+.+|.++
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            4456667777777777654321  011 1123466666666666654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.20  E-value=2.2e-11  Score=105.30  Aligned_cols=108  Identities=31%  Similarity=0.355  Sum_probs=43.7

Q ss_pred             CccEEEccCccCCCcCCCcccC-CCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEE
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFP-RNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLV  469 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  469 (650)
                      ++++|++.+|.|. .+..  +. .+.+|+.|++++|.|+..  +++..++.|++|++++|+|+.+.+.....+|+|++|+
T Consensus        20 ~~~~L~L~~n~I~-~Ie~--L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TIEN--LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             -----------------S----TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccc-cccc--hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            6777888887776 4432  33 567899999999998843  4678889999999999999885443334689999999


Q ss_pred             ccCcccceecCCCCCCCCCCCCCeeeCCCcccccc
Q 043523          470 LQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGR  504 (650)
Q Consensus       470 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  504 (650)
                      +++|+|.+... ...+..+++|+.|++.+||++..
T Consensus        95 L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   95 LSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             -TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGS
T ss_pred             CcCCcCCChHH-hHHHHcCCCcceeeccCCcccch
Confidence            99999976543 45667889999999999998744

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.14  E-value=3.5e-11  Score=104.08  Aligned_cols=107  Identities=23%  Similarity=0.261  Sum_probs=28.8

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCCCCC-CCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCc-cCCCCC
Q 043523           18 LQVPTLETLDLSENQLLQGSLPNFP-KNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSM-ANLTQL   95 (650)
Q Consensus        18 ~~~~~L~~L~ls~~~i~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l-~~l~~L   95 (650)
                      .+..+++.|+|++|.|..+  +.+. .+.+|++|++++|.++. + +.+..+++|++|++++|+|+. ....+ ..+++|
T Consensus        16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred             ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence            4444566667777666443  2343 35666666666666662 2 245566666666666666663 22223 346666


Q ss_pred             cEEEccCCcccccC--CccccCCCcCEEeCCCCcCc
Q 043523           96 FHMDFSSNHFSGHI--PSLHKSRNLKYLDLSFNNLS  129 (650)
Q Consensus        96 ~~L~l~~~~i~~~~--~~~~~~~~L~~L~l~~~~l~  129 (650)
                      ++|++++|+|....  ..+..+++|++|++.+|++.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            66666666665322  23444566666666666554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.07  E-value=3.2e-11  Score=108.35  Aligned_cols=59  Identities=31%  Similarity=0.354  Sum_probs=37.5

Q ss_pred             CCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCccc
Q 043523          438 CNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKF  501 (650)
Q Consensus       438 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~  501 (650)
                      .+.|+++|||+|.|+. +.....-.|.++.|+++.|.+....    .+..+++|..||+++|.+
T Consensus       283 Wq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v~----nLa~L~~L~~LDLS~N~L  341 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTVQ----NLAELPQLQLLDLSGNLL  341 (490)
T ss_pred             Hhhhhhccccccchhh-hhhhhhhccceeEEeccccceeeeh----hhhhcccceEeecccchh
Confidence            3567777777777776 3344555677777777777776543    245556666666666654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.07  E-value=2.1e-10  Score=117.26  Aligned_cols=122  Identities=34%  Similarity=0.430  Sum_probs=61.9

Q ss_pred             EEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCC-CCccEEEcCCCccccccchhcccCCCCCEEeC
Q 043523          368 VLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRN-CGLQILDLGGNQLQGVVPKSLANCNMLQVLDL  446 (650)
Q Consensus       368 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l-~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L  446 (650)
                      .++...+.+..........   +.++.+++.++.+. .++.. .... .+|+.|++++|++. .++..+..+++|+.|++
T Consensus        97 ~l~~~~~~~~~~~~~~~~~---~~l~~L~l~~n~i~-~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l  170 (394)
T COG4886          97 SLDLNLNRLRSNISELLEL---TNLTSLDLDNNNIT-DIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL  170 (394)
T ss_pred             eeeccccccccCchhhhcc---cceeEEecCCcccc-cCccc-cccchhhcccccccccchh-hhhhhhhcccccccccc
Confidence            4666666553222222111   25666666666665 33332 2222 25666666666665 33344556666666666


Q ss_pred             CCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCc
Q 043523          447 KNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASN  499 (650)
Q Consensus       447 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n  499 (650)
                      ++|++.+ .+......+.|+.|++++|++...   +........|+++.+++|
T Consensus       171 ~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~~l---~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         171 SFNDLSD-LPKLLSNLSNLNNLDLSGNKISDL---PPEIELLSALEELDLSNN  219 (394)
T ss_pred             CCchhhh-hhhhhhhhhhhhheeccCCccccC---chhhhhhhhhhhhhhcCC
Confidence            6666665 333333566666666666665532   111122233555555555

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.02  E-value=8.6e-12  Score=121.82  Aligned_cols=167  Identities=26%  Similarity=0.320  Sum_probs=85.1

Q ss_pred             ecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccc
Q 043523            3 DLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFT   82 (650)
Q Consensus         3 ~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~   82 (650)
                      |++.|++. .+|..+..|..|+.+.|++|.+ ...+.++..+..|.+++|+.|.+. .+|..++.|+ |++|-+++|+++
T Consensus        81 DlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~  156 (722)
T KOG0532|consen   81 DLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT  156 (722)
T ss_pred             hccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc
Confidence            44455554 4444455555555555555554 333444455555555555555554 4455444443 455555555555


Q ss_pred             cCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhcc
Q 043523           83 GPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLF  162 (650)
Q Consensus        83 ~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  162 (650)
                       .+|..++....|.+||.+.|.+...++.+..+.+|+.|++..|++. .++.+ +. .-.|..||++.|++. .+|..|.
T Consensus       157 -~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~E-l~-~LpLi~lDfScNkis-~iPv~fr  231 (722)
T KOG0532|consen  157 -SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEE-LC-SLPLIRLDFSCNKIS-YLPVDFR  231 (722)
T ss_pred             -cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHH-Hh-CCceeeeecccCcee-ecchhhh
Confidence             4455555555555555555555555555555555555555555544 33333 22 233455555555555 4455555


Q ss_pred             CCCCCCEEEccCCcCC
Q 043523          163 LLPNLETLWLSNNQFE  178 (650)
Q Consensus       163 ~l~~L~~L~l~~~~~~  178 (650)
                      .+..|++|-|.+|.+.
T Consensus       232 ~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  232 KMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhheeeeeccCCCC
Confidence            5555555555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.99  E-value=2.7e-10  Score=80.86  Aligned_cols=61  Identities=46%  Similarity=0.608  Sum_probs=47.3

Q ss_pred             cCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcC
Q 043523          584 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL  644 (650)
Q Consensus       584 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~  644 (650)
                      ++|++|++++|+++...+++|..+++|++|++++|.++.+.++.|..+++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4677778888877766667777788888888888888777777788888888888887764

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.97  E-value=5.5e-11  Score=116.31  Aligned_cols=166  Identities=27%  Similarity=0.377  Sum_probs=142.3

Q ss_pred             eecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCcc
Q 043523            2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNF   81 (650)
Q Consensus         2 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l   81 (650)
                      +.++.|.|. ..|.++.++..|+.++|+.|++ ...+..++.|+ |+.|.+++|+++ .+|+.++..+.|..|+.++|.+
T Consensus       103 liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei  178 (722)
T KOG0532|consen  103 LILYHNCIR-TIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI  178 (722)
T ss_pred             HHHHhccce-ecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhh
Confidence            346677777 7889999999999999999998 56667788887 999999999998 8999999999999999999999


Q ss_pred             ccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhc
Q 043523           82 TGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSL  161 (650)
Q Consensus        82 ~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  161 (650)
                      . .+|.-+..+.+|+.|++..|++..+++.+. .-.|..||++.|++. .++.. |.+|+.|++|-|.+|.+++ .|..+
T Consensus       179 ~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis-~iPv~-fr~m~~Lq~l~LenNPLqS-PPAqI  253 (722)
T KOG0532|consen  179 Q-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKIS-YLPVD-FRKMRHLQVLQLENNPLQS-PPAQI  253 (722)
T ss_pred             h-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCcee-ecchh-hhhhhhheeeeeccCCCCC-ChHHH
Confidence            9 888889999999999999999998888888 567999999999998 77887 8999999999999999984 44444


Q ss_pred             cC---CCCCCEEEccCCc
Q 043523          162 FL---LPNLETLWLSNNQ  176 (650)
Q Consensus       162 ~~---l~~L~~L~l~~~~  176 (650)
                      +.   .+-.++|+..-|+
T Consensus       254 C~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  254 CEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             Hhccceeeeeeecchhcc
Confidence            43   3344667776663

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.94  E-value=1.2e-09  Score=111.64  Aligned_cols=194  Identities=34%  Similarity=0.407  Sum_probs=127.0

Q ss_pred             EEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCC-CCcEEEcCCCccccCCCcCccCCCCCcEEEccCC
Q 043523           25 TLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLE-NLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSN  103 (650)
Q Consensus        25 ~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~  103 (650)
                      .++++.+.+ ......+..+..++.|++.++.++ .++....... +|+.|++++|++. ..|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~-~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRL-RSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeecccccc-ccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            466666665 223334445567777777777777 5566566663 7777788777777 55566777777888888877


Q ss_pred             cccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCch
Q 043523          104 HFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPE  183 (650)
Q Consensus       104 ~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  183 (650)
                      ++...++.....+.|+.|++++|.+. .++.. .+....|+++.+++|.+. ..+..+..+.++..+.+.+|++..... 
T Consensus       174 ~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~-~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~-  249 (394)
T COG4886         174 DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPE-IELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPE-  249 (394)
T ss_pred             hhhhhhhhhhhhhhhhheeccCCccc-cCchh-hhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccc-
Confidence            77766665556777777888777776 44443 345556777777777533 344566667777777777776653211 


Q ss_pred             hhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCcccc
Q 043523          184 ISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSR  229 (650)
Q Consensus       184 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~  229 (650)
                       ....+..++.+++++|.+. .++.  ++...+++.++++++.+..
T Consensus       250 -~~~~l~~l~~L~~s~n~i~-~i~~--~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         250 -SIGNLSNLETLDLSNNQIS-SISS--LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             -hhccccccceecccccccc-cccc--ccccCccCEEeccCccccc
Confidence             1223455778888887777 4443  4677788888888876653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=1.1e-09  Score=77.59  Aligned_cols=59  Identities=37%  Similarity=0.515  Sum_probs=33.3

Q ss_pred             CccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcc
Q 043523          416 GLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNN  474 (650)
Q Consensus       416 ~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~  474 (650)
                      +|++|++++|+++...+..|..+++|++|++++|++..+.+..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555554444555555555555555555555555555555555555555554

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.89  E-value=3.8e-10  Score=101.60  Aligned_cols=229  Identities=23%  Similarity=0.238  Sum_probs=128.5

Q ss_pred             cccCCCCCCEEeCCCCCC-------CCCC-CCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCc
Q 043523           16 KILQVPTLETLDLSENQL-------LQGS-LPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPP   87 (650)
Q Consensus        16 ~~~~~~~L~~L~ls~~~i-------~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~   87 (650)
                      .+.-+.+|..|..++..-       .... +-.+.-+++|+.+.++.+.-. .+.+-...-|.|+++...+..+.. .|.
T Consensus       177 ildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~-~~~  254 (490)
T KOG1259|consen  177 VLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQD-VPS  254 (490)
T ss_pred             HHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccc-ccc
Confidence            344456677777665431       0000 012223677788888777544 333333345677777777665541 111


Q ss_pred             CccCCCCCcEEEccCCc---ccc-cCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccC
Q 043523           88 SMANLTQLFHMDFSSNH---FSG-HIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL  163 (650)
Q Consensus        88 ~l~~l~~L~~L~l~~~~---i~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  163 (650)
                       +--...+  -|.....   ..+ ....+..-..|+++|+++|.|+ .+..+ ..-.++++.|++++|.+..+  +.+..
T Consensus       255 -l~pe~~~--~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDES-vKL~Pkir~L~lS~N~i~~v--~nLa~  327 (490)
T KOG1259|consen  255 -LLPETIL--ADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDES-VKLAPKLRRLILSQNRIRTV--QNLAE  327 (490)
T ss_pred             -ccchhhh--cCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhh-hhhccceeEEeccccceeee--hhhhh
Confidence             1001111  1111110   000 0011112256677777777776 45555 56667777777777776643  23667


Q ss_pred             CCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCC
Q 043523          164 LPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPIL  243 (650)
Q Consensus       164 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l  243 (650)
                      +++|+.||+++|.++. ...| ...+.+.+.|.+++|.+.+ +. ++ ..+-+|..|++++|++..++       .+..+
T Consensus       328 L~~L~~LDLS~N~Ls~-~~Gw-h~KLGNIKtL~La~N~iE~-LS-GL-~KLYSLvnLDl~~N~Ie~ld-------eV~~I  395 (490)
T KOG1259|consen  328 LPQLQLLDLSGNLLAE-CVGW-HLKLGNIKTLKLAQNKIET-LS-GL-RKLYSLVNLDLSSNQIEELD-------EVNHI  395 (490)
T ss_pred             cccceEeecccchhHh-hhhh-HhhhcCEeeeehhhhhHhh-hh-hh-HhhhhheeccccccchhhHH-------Hhccc
Confidence            7777777777776652 2222 2235667778888777652 21 22 56677888889888887553       34447


Q ss_pred             CCCCCCcEEEccCCcCCCCCChh
Q 043523          244 KNQSQLSGLDISNNQIPGEIPNW  266 (650)
Q Consensus       244 ~~~~~L~~L~l~~~~i~~~~~~~  266 (650)
                      +++|.|+++.+.+|.+. .+++.
T Consensus       396 G~LPCLE~l~L~~NPl~-~~vdY  417 (490)
T KOG1259|consen  396 GNLPCLETLRLTGNPLA-GSVDY  417 (490)
T ss_pred             ccccHHHHHhhcCCCcc-ccchH
Confidence            88889999999999887 44543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.88  E-value=1.8e-09  Score=117.61  Aligned_cols=128  Identities=20%  Similarity=0.284  Sum_probs=63.9

Q ss_pred             CCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCc--CcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEE
Q 043523           21 PTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTG--FSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHM   98 (650)
Q Consensus        21 ~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~--~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L   98 (650)
                      ...|.+.+-++.+..  ...=..++.|++|-+.+|.  +....++.|..++.|++|+|++|.-.+.+|..++++.+||+|
T Consensus       523 ~~~rr~s~~~~~~~~--~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEH--IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchhh--ccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            445555555554411  1112223455555555553  332222335555566666665554444555555556666666


Q ss_pred             EccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCC
Q 043523           99 DFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHN  151 (650)
Q Consensus        99 ~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~  151 (650)
                      +++++.+..+|.++.++..|.+|++..+.....++.. ...+++|++|.+...
T Consensus       601 ~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  601 DLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI-LLELQSLRVLRLPRS  652 (889)
T ss_pred             cccCCCccccchHHHHHHhhheeccccccccccccch-hhhcccccEEEeecc
Confidence            6665555555555555555666655555433222221 344555665555544

>PLN03150 hypothetical protein; Provisional

Probab=98.86  E-value=3.7e-09  Score=112.95  Aligned_cols=90  Identities=34%  Similarity=0.712  Sum_probs=80.3

Q ss_pred             cccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEcc
Q 043523          561 IFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLS  640 (650)
Q Consensus       561 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  640 (650)
                      .++.|+|++|.+.+..+..+..+++|+.|+|++|.+++.+|..++.+++|+.|++++|++++.+|+.+.++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            46788999999988888888899999999999999988888888999999999999999998889899999999999999


Q ss_pred             CCcCcccCCC
Q 043523          641 YNNLVGKIPT  650 (650)
Q Consensus       641 ~n~~~~~~p~  650 (650)
                      +|.++|.+|+
T Consensus       499 ~N~l~g~iP~  508 (623)
T PLN03150        499 GNSLSGRVPA  508 (623)
T ss_pred             CCcccccCCh
Confidence            9999998884

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=1.4e-10  Score=104.30  Aligned_cols=226  Identities=18%  Similarity=0.164  Sum_probs=143.3

Q ss_pred             CEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCC-CCCCCCCC-CCCcEEEcCCCcccc-CCCcCccCCCCCcEEEc
Q 043523           24 ETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT-LPDSIGNL-ENLTWVEVRRCNFTG-PIPPSMANLTQLFHMDF  100 (650)
Q Consensus        24 ~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~l-~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~l  100 (650)
                      +++|+.+-.|.......+.. +.+.++.+...-+... +.+.+.-. ..|++++|++..|+. .+...+..|++|+.|.+
T Consensus       139 ~~lDl~~r~i~p~~l~~l~~-rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSl  217 (419)
T KOG2120|consen  139 QTLDLTGRNIHPDVLGRLLS-RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSL  217 (419)
T ss_pred             eeeccCCCccChhHHHHHHh-CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccc
Confidence            56777777664443333333 5566777765443321 22222222 359999999988873 34456678999999999


Q ss_pred             cCCccccc-CCccccCCCcCEEeCCCCc-CcccCChHHHhccccCCeEEccCCcCCCCcchh-cc-CCCCCCEEEccCCc
Q 043523          101 SSNHFSGH-IPSLHKSRNLKYLDLSFNN-LSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRS-LF-LLPNLETLWLSNNQ  176 (650)
Q Consensus       101 ~~~~i~~~-~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~-~l~~L~~L~l~~~~  176 (650)
                      .++++.+. ...+.+..+|+.|+++++. ++.....-.++.|+.|..|++++|......... .. --++|+.|+++++.
T Consensus       218 Eg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r  297 (419)
T KOG2120|consen  218 EGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR  297 (419)
T ss_pred             cccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence            99988763 3467888999999999884 454444445789999999999999765332211 12 24678888888875


Q ss_pred             CCCCCc--hhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEc
Q 043523          177 FENQLP--EISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDI  254 (650)
Q Consensus       177 ~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l  254 (650)
                      -.-...  +.....++++.+||+++|......-...|..++.|+.|.++.|..-       .+..+-.+...|.|..|++
T Consensus       298 rnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-------~p~~~~~l~s~psl~yLdv  370 (419)
T KOG2120|consen  298 RNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-------IPETLLELNSKPSLVYLDV  370 (419)
T ss_pred             hhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC-------ChHHeeeeccCcceEEEEe
Confidence            431111  2344568888888888876432333344567788888888877421       0112222666677777777


Q ss_pred             cCC
Q 043523          255 SNN  257 (650)
Q Consensus       255 ~~~  257 (650)
                      .++
T Consensus       371 ~g~  373 (419)
T KOG2120|consen  371 FGC  373 (419)
T ss_pred             ccc
Confidence            664

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.77  E-value=1.7e-09  Score=110.40  Aligned_cols=84  Identities=20%  Similarity=0.220  Sum_probs=50.0

Q ss_pred             ccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCc---cCCcc-ccCCCCCCeE
Q 043523          562 FTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG---KIPAQ-LASLNFLSVL  637 (650)
Q Consensus       562 l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~---~~~~~-l~~l~~L~~L  637 (650)
                      |+.+++++|.+.... ..+..+..+..+++++|++...  +.+...+.+..+....+.+..   ..... ....+.++.+
T Consensus       234 L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCcccccc-ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            566677777765332 4456667777777777777632  234555666666666666552   12222 4556667777


Q ss_pred             EccCCcCcccC
Q 043523          638 NLSYNNLVGKI  648 (650)
Q Consensus       638 ~l~~n~~~~~~  648 (650)
                      .+.+|+.....
T Consensus       311 ~~~~~~~~~~~  321 (414)
T KOG0531|consen  311 TLELNPIRKIS  321 (414)
T ss_pred             ccccCcccccc
Confidence            77777665543

>PLN03150 hypothetical protein; Provisional

Probab=98.76  E-value=1.9e-08  Score=107.59  Aligned_cols=108  Identities=25%  Similarity=0.409  Sum_probs=91.5

Q ss_pred             CCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEcc
Q 043523           22 TLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFS  101 (650)
Q Consensus        22 ~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~  101 (650)
                      .++.|+|++|.+....+..|..+++|++|+|++|.+.+.+|..++.+++|++|+|++|.+++..|..++++++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999876777788899999999999999998899999999999999999999999999999999999999999


Q ss_pred             CCcccccCC-ccccC-CCcCEEeCCCCcCc
Q 043523          102 SNHFSGHIP-SLHKS-RNLKYLDLSFNNLS  129 (650)
Q Consensus       102 ~~~i~~~~~-~~~~~-~~L~~L~l~~~~l~  129 (650)
                      +|.+.+..| .+... .++..+++.+|...
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccc
Confidence            999876555 44432 56678888888643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.72  E-value=5.5e-08  Score=106.29  Aligned_cols=277  Identities=18%  Similarity=0.180  Sum_probs=176.2

Q ss_pred             CcCcccCCcccEEEeccCcCCC-CCCCCCCCccEEecCCCc--CCCCchhhhhccCCccEEEccCCcccccccccccCCC
Q 043523          288 LQEPYSISSIRLLDLHSNQLRG-NIPHMSTNTSYVDYSNNH--FTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGI  364 (650)
Q Consensus       288 l~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~L~~L~l~~~~--i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~  364 (650)
                      .+........+.+.+.++.+.. .....++.++.|-+..|.  +..++..++..++.|..|++++|.-.+.+|..++.+-
T Consensus       516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li  595 (889)
T KOG4658|consen  516 IPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV  595 (889)
T ss_pred             cccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence            3444445566777777766542 223344578888888886  7788888888899999999999888888999999999


Q ss_pred             cccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCcc--ccccchhcccCCCCC
Q 043523          365 YFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQL--QGVVPKSLANCNMLQ  442 (650)
Q Consensus       365 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i--~~~~~~~~~~l~~L~  442 (650)
                      +|+.|+++++.+. .+|..+.+..  .|.+|++..+.....+ ......+++|++|.+..-..  .......+.++.+|+
T Consensus       596 ~LryL~L~~t~I~-~LP~~l~~Lk--~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~  671 (889)
T KOG4658|consen  596 HLRYLDLSDTGIS-HLPSGLGNLK--KLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE  671 (889)
T ss_pred             hhhcccccCCCcc-ccchHHHHHH--hhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchh
Confidence            9999999999988 8898888877  8999999988766444 44466789999999977642  222334456677777


Q ss_pred             EEeCCCCccccccchhhhcCCCCC----eEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHH------HHh
Q 043523          443 VLDLKNNHISDNFPCWLGNASSLQ----VLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKW------LLT  512 (650)
Q Consensus       443 ~L~Ls~n~l~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~------~~~  512 (650)
                      .+....... . ....+..++.|.    .+.+.++...+   ....+..+.+|+.|.+.++.+..... .|      ...
T Consensus       672 ~ls~~~~s~-~-~~e~l~~~~~L~~~~~~l~~~~~~~~~---~~~~~~~l~~L~~L~i~~~~~~e~~~-~~~~~~~~~~~  745 (889)
T KOG4658|consen  672 NLSITISSV-L-LLEDLLGMTRLRSLLQSLSIEGCSKRT---LISSLGSLGNLEELSILDCGISEIVI-EWEESLIVLLC  745 (889)
T ss_pred             hheeecchh-H-hHhhhhhhHHHHHHhHhhhhcccccce---eecccccccCcceEEEEcCCCchhhc-ccccccchhhh
Confidence            777755544 1 112233444444    33333333221   24556677889999998887753211 11      000


Q ss_pred             HHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCc
Q 043523          513 MEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMS  592 (650)
Q Consensus       513 l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls  592 (650)
                      +..+.......+..++.+.+.                       ..+|+|+.|.+.++...+.+......+..+..+.+.
T Consensus       746 f~~l~~~~~~~~~~~r~l~~~-----------------------~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~  802 (889)
T KOG4658|consen  746 FPNLSKVSILNCHMLRDLTWL-----------------------LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILP  802 (889)
T ss_pred             HHHHHHHHhhccccccccchh-----------------------hccCcccEEEEecccccccCCCHHHHhhhcccEEec
Confidence            112222222222333333222                       357888888888888766555555555556655555


Q ss_pred             cccCc
Q 043523          593 HNALT  597 (650)
Q Consensus       593 ~n~i~  597 (650)
                      .+.+.
T Consensus       803 f~~~~  807 (889)
T KOG4658|consen  803 FNKLE  807 (889)
T ss_pred             ccccc
Confidence            55444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=4.5e-10  Score=101.11  Aligned_cols=198  Identities=18%  Similarity=0.139  Sum_probs=126.6

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCc-cccccc-hhhhcCCCCCeE
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNH-ISDNFP-CWLGNASSLQVL  468 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~~~~L~~L  468 (650)
                      .|++||+++..++..-....+..|.+|+.|.+.++++.+-+...+++..+|+.|+|+.|. ++.... -.+.+|..|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            688888888877755555667778888888888888877777778888888888888864 443222 234668888888


Q ss_pred             EccCcccceecCCCCCCCC-CCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEe
Q 043523          469 VLQSNNFSGHISCPRNNVS-WPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVT  547 (650)
Q Consensus       469 ~l~~n~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (650)
                      +|+.|-...... .-.+.. -+.|+.|+++|+.-.-..     ..+                                  
T Consensus       266 NlsWc~l~~~~V-tv~V~hise~l~~LNlsG~rrnl~~-----sh~----------------------------------  305 (419)
T KOG2120|consen  266 NLSWCFLFTEKV-TVAVAHISETLTQLNLSGYRRNLQK-----SHL----------------------------------  305 (419)
T ss_pred             CchHhhccchhh-hHHHhhhchhhhhhhhhhhHhhhhh-----hHH----------------------------------
Confidence            888887664331 111111 256777888776421000     001                                  


Q ss_pred             eccchhhcccCCCcccEEeCCCCccccC-CCccccCCcCCCEEeCccccCcccCCcC---ccCCCCCCeeeCCCCcCCcc
Q 043523          548 VKGVETMLLKVPNIFTSIDFSSNNFEGP-IPEEMGRFKSLYALNMSHNALTGSIPSS---FGNLKQIESLDLSMNNLSGK  623 (650)
Q Consensus       548 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~~~~l~~L~~L~ls~n~i~~~~~~~---~~~l~~L~~L~l~~n~i~~~  623 (650)
                           ......||++..|||+.|..... ....+..++.|++|.++.|...  +|+.   +...|+|.+||+.+|-=.+.
T Consensus       306 -----~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsdt~  378 (419)
T KOG2120|consen  306 -----STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSDTT  378 (419)
T ss_pred             -----HHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCchH
Confidence                 11223689999999998875422 2235677889999999999654  3433   45668899999988743322


Q ss_pred             CCccccCCCCCC
Q 043523          624 IPAQLASLNFLS  635 (650)
Q Consensus       624 ~~~~l~~l~~L~  635 (650)
                      ..-....+++|+
T Consensus       379 mel~~e~~~~lk  390 (419)
T KOG2120|consen  379 MELLKEMLSHLK  390 (419)
T ss_pred             HHHHHHhCcccc
Confidence            222223445444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.68  E-value=3.3e-09  Score=108.33  Aligned_cols=76  Identities=30%  Similarity=0.350  Sum_probs=45.8

Q ss_pred             EeCCCCccccCCCccccCCcC--CCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCC
Q 043523          565 IDFSSNNFEGPIPEEMGRFKS--LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN  642 (650)
Q Consensus       565 L~l~~~~~~~~~~~~~~~l~~--L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  642 (650)
                      +++..|.+..+.  .+..+..  |+.+++++|++.. .+..+..+..+..|++..|.+...  ..+...+.+..+....+
T Consensus       213 ~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~  287 (414)
T KOG0531|consen  213 LSLLDNKISKLE--GLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDN  287 (414)
T ss_pred             hhcccccceecc--CcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcc
Confidence            355556655322  2222233  7788888887773 324556677788888887777643  34566666666666666


Q ss_pred             cCc
Q 043523          643 NLV  645 (650)
Q Consensus       643 ~~~  645 (650)
                      ++.
T Consensus       288 ~~~  290 (414)
T KOG0531|consen  288 KLA  290 (414)
T ss_pred             hhc
Confidence            654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=1.7e-08  Score=91.13  Aligned_cols=83  Identities=23%  Similarity=0.248  Sum_probs=53.2

Q ss_pred             CCCcccEEeCCCCccccCC-CccccCCcCCCEEeCccccCcc-cCCcCccCCCCCCeeeCCCCcCCccCCc------ccc
Q 043523          558 VPNIFTSIDFSSNNFEGPI-PEEMGRFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNLSGKIPA------QLA  629 (650)
Q Consensus       558 ~~~~l~~L~l~~~~~~~~~-~~~~~~l~~L~~L~ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~------~l~  629 (650)
                      .+|++..+-+..|.+.... .+....++.+..|+|+.++|.+ ...+++..+++|..|.++++.+......      .++
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa  276 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA  276 (418)
T ss_pred             hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence            4566666777777665432 2355566777778888887775 2335567778888888888877654332      346


Q ss_pred             CCCCCCeEEcc
Q 043523          630 SLNFLSVLNLS  640 (650)
Q Consensus       630 ~l~~L~~L~l~  640 (650)
                      .+++++.|+=+
T Consensus       277 RL~~v~vLNGs  287 (418)
T KOG2982|consen  277 RLTKVQVLNGS  287 (418)
T ss_pred             eccceEEecCc
Confidence            67777777644

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.59  E-value=1.8e-09  Score=101.99  Aligned_cols=180  Identities=17%  Similarity=0.106  Sum_probs=95.8

Q ss_pred             CCCCccEEEcCCCc-ccccc-chhcccCCCCCEEeCCCCc-cccccchhh-hcCCCCCeEEccCcccceecCCCCCCCCC
Q 043523          413 RNCGLQILDLGGNQ-LQGVV-PKSLANCNMLQVLDLKNNH-ISDNFPCWL-GNASSLQVLVLQSNNFSGHISCPRNNVSW  488 (650)
Q Consensus       413 ~l~~L~~L~ls~~~-i~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  488 (650)
                      .+..+..+++..|. +++.. ...-..+..|++|+.+++. +++.....+ .++++|+.|.+..|+.-+..+......+|
T Consensus       266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~  345 (483)
T KOG4341|consen  266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC  345 (483)
T ss_pred             cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC
Confidence            34445555555552 33332 1222346677777777753 333222233 34777777777777754444444455667


Q ss_pred             CCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCC
Q 043523          489 PLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFS  568 (650)
Q Consensus       489 ~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~  568 (650)
                      +.|+.+++.++......   .+.                                          .....++.|+.+.++
T Consensus       346 ~~Le~l~~e~~~~~~d~---tL~------------------------------------------sls~~C~~lr~lsls  380 (483)
T KOG4341|consen  346 PHLERLDLEECGLITDG---TLA------------------------------------------SLSRNCPRLRVLSLS  380 (483)
T ss_pred             hhhhhhcccccceehhh---hHh------------------------------------------hhccCCchhccCChh
Confidence            77777777776432111   000                                          011256666777777


Q ss_pred             CCccccCC-----CccccCCcCCCEEeCccccCc-ccCCcCccCCCCCCeeeCCCCcC-Ccc-CCccccCCCCCCeE
Q 043523          569 SNNFEGPI-----PEEMGRFKSLYALNMSHNALT-GSIPSSFGNLKQIESLDLSMNNL-SGK-IPAQLASLNFLSVL  637 (650)
Q Consensus       569 ~~~~~~~~-----~~~~~~l~~L~~L~ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~i-~~~-~~~~l~~l~~L~~L  637 (650)
                      +|....-.     ...-.....|+.+.+++++.+ +...+.+..+++|+.+++..|+- +.. +...-+++|++++.
T Consensus       381 hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~  457 (483)
T KOG4341|consen  381 HCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH  457 (483)
T ss_pred             hhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence            66543111     122344567777777777543 45556666677777777777743 222 22233455655543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.55  E-value=3.6e-09  Score=100.03  Aligned_cols=110  Identities=16%  Similarity=-0.007  Sum_probs=62.5

Q ss_pred             cCCeEEccCCcCCCCc--chhccCCCCCCEEEccCCcCCCCC-chhhhcCCCCccEEEccCCc-CCCCCchhHhhcCCCC
Q 043523          142 NLNLVLLSHNSLNGSI--PRSLFLLPNLETLWLSNNQFENQL-PEISNVSSSVLFDLDLSGNR-LEGPVPISIIFELRNL  217 (650)
Q Consensus       142 ~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~~L  217 (650)
                      .|+.|.+.+++-....  -.....++++++|.+.++...... -.-....++.|+++++..|. +++..-..+...+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            5666666666433221  123345777888877777532111 11233457888888888854 4433334455678899


Q ss_pred             cEEeCCCCccccccccCCCCCCCCC-CCCCCCCcEEEccCCc
Q 043523          218 YTLDLSSNKFSRLRLASSKPRVIPI-LKNQSQLSGLDISNNQ  258 (650)
Q Consensus       218 ~~L~l~~~~~~~~~~~~~~~~~l~~-l~~~~~L~~L~l~~~~  258 (650)
                      +.++++||.--+-       ..+.. ..++..++.+...+|.
T Consensus       219 ~~lNlSwc~qi~~-------~gv~~~~rG~~~l~~~~~kGC~  253 (483)
T KOG4341|consen  219 KYLNLSWCPQISG-------NGVQALQRGCKELEKLSLKGCL  253 (483)
T ss_pred             HHhhhccCchhhc-------CcchHHhccchhhhhhhhcccc
Confidence            9999998853210       12222 5566666666666543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.46  E-value=2.1e-09  Score=108.42  Aligned_cols=84  Identities=37%  Similarity=0.283  Sum_probs=56.1

Q ss_pred             CCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCcc-CCccccCCCCCCe
Q 043523          558 VPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK-IPAQLASLNFLSV  636 (650)
Q Consensus       558 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~  636 (650)
                      .++.|+.|||++|.+..+.......|+ |+.|++++|.++..  .+++++.+|+.||+++|-+.+- --.-+..+..|+.
T Consensus       207 ~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~  283 (1096)
T KOG1859|consen  207 RLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV  283 (1096)
T ss_pred             hcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHH
Confidence            356666677777776655544555554 88888888887732  3567788888888888866542 1123566677888


Q ss_pred             EEccCCcC
Q 043523          637 LNLSYNNL  644 (650)
Q Consensus       637 L~l~~n~~  644 (650)
                      |+|.+||+
T Consensus       284 L~LeGNPl  291 (1096)
T KOG1859|consen  284 LWLEGNPL  291 (1096)
T ss_pred             HhhcCCcc
Confidence            88888875

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=2.7e-08  Score=89.86  Aligned_cols=185  Identities=18%  Similarity=0.131  Sum_probs=95.6

Q ss_pred             CCCCcEEEcCCCcccc--CCCcCccCCCCCcEEEccCCcccccCCcc-ccCCCcCEEeCCCCcCcccCChHHHhccccCC
Q 043523           68 LENLTWVEVRRCNFTG--PIPPSMANLTQLFHMDFSSNHFSGHIPSL-HKSRNLKYLDLSFNNLSGGISSTFWEQLVNLN  144 (650)
Q Consensus        68 l~~L~~L~L~~~~l~~--~~~~~l~~l~~L~~L~l~~~~i~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~  144 (650)
                      +.+++.++|.+|.|++  .....+.++|+|++|+++.|++...+... ....+|++|-+.+..+......+++..++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            4556666666666652  22234456777777777777665443333 34467777777777776555556667777777


Q ss_pred             eEEccCCcCCCC--cchhccC-CCCCCEEEccCCcCCCCCchh--hhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcE
Q 043523          145 LVLLSHNSLNGS--IPRSLFL-LPNLETLWLSNNQFENQLPEI--SNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYT  219 (650)
Q Consensus       145 ~L~l~~~~~~~~--~~~~l~~-l~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~  219 (650)
                      +|.++.|.....  ...+... -+.++.+....|... .+...  ....++++..+-+.+|.+.+.-...-+..++.+..
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~-~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ-LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHH-HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            777777733221  1112222 224444444444322 11110  11224555555555555443333333344555556


Q ss_pred             EeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCC
Q 043523          220 LDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIP  260 (650)
Q Consensus       220 L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~  260 (650)
                      |+++.+++.+.       ..+..+.+++.|+.|.++++.+.
T Consensus       229 LnL~~~~idsw-------asvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  229 LNLGANNIDSW-------ASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hhhcccccccH-------HHHHHHcCCchhheeeccCCccc
Confidence            66666655432       23333555666666666665554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.40  E-value=4e-08  Score=99.48  Aligned_cols=122  Identities=23%  Similarity=0.202  Sum_probs=72.5

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL  470 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  470 (650)
                      .|...+.+.|.++ . .+..+.-++.++.|+|+.|+++..  ..+..|+.|++|||++|.+..+.--...+|. |+.|++
T Consensus       165 ~L~~a~fsyN~L~-~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-L-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-h-HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeee
Confidence            3444555555543 2 222355566677777777777633  3667777777777777777764333334455 777777


Q ss_pred             cCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhc
Q 043523          471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAET  521 (650)
Q Consensus       471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~  521 (650)
                      ++|.+++.    ..+.++.+|+.||+++|-+.+.-....+-.+..++....
T Consensus       240 rnN~l~tL----~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~L  286 (1096)
T KOG1859|consen  240 RNNALTTL----RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWL  286 (1096)
T ss_pred             cccHHHhh----hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhh
Confidence            77777653    245566777777777777665544444444444333333

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.30  E-value=1.6e-06  Score=74.25  Aligned_cols=105  Identities=22%  Similarity=0.239  Sum_probs=56.2

Q ss_pred             CCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCC-CcCccCCCCCcEEEc
Q 043523           22 TLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPI-PPSMANLTQLFHMDF  100 (650)
Q Consensus        22 ~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~l  100 (650)
                      +...+||++|.+  ...+.|..++.|.+|.|++|.|+...|.--..+++|+.|.+.+|.+.... -..+..|++|++|.+
T Consensus        43 ~~d~iDLtdNdl--~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDL--RKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccch--hhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            445566666655  33445666666666666666666444444444555666666666555211 123455566666666


Q ss_pred             cCCcccccCC----ccccCCCcCEEeCCCCcC
Q 043523          101 SSNHFSGHIP----SLHKSRNLKYLDLSFNNL  128 (650)
Q Consensus       101 ~~~~i~~~~~----~~~~~~~L~~L~l~~~~l  128 (650)
                      -+|.++....    .+.++|+|+.||++.-..
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            6665543222    244456666666555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.20  E-value=2.3e-07  Score=82.91  Aligned_cols=103  Identities=24%  Similarity=0.220  Sum_probs=63.6

Q ss_pred             CCCCccEEEcCCCccccccc----hhcccCCCCCEEeCCCCccccccch-----hhhcCCCCCeEEccCcccceecC--C
Q 043523          413 RNCGLQILDLGGNQLQGVVP----KSLANCNMLQVLDLKNNHISDNFPC-----WLGNASSLQVLVLQSNNFSGHIS--C  481 (650)
Q Consensus       413 ~l~~L~~L~ls~~~i~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~~~~L~~L~l~~n~~~~~~~--~  481 (650)
                      .-+.|+...+..|++..-..    ..+..-..|+++.+..|.|......     .+..+.+|+.|+|+.|-++-..+  +
T Consensus       155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L  234 (388)
T COG5238         155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL  234 (388)
T ss_pred             cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence            34557777777776652211    2333445777788888776643222     23457888888888887764321  2


Q ss_pred             CCCCCCCCCCCeeeCCCcccccccChHHHHhHHh
Q 043523          482 PRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEE  515 (650)
Q Consensus       482 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~  515 (650)
                      ...+..|+.|++|.+.+|-+........+....+
T Consensus       235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e  268 (388)
T COG5238         235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE  268 (388)
T ss_pred             HHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence            4556778888888888887766655555544443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.08  E-value=5.4e-06  Score=71.10  Aligned_cols=109  Identities=22%  Similarity=0.193  Sum_probs=85.2

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCcccccc-chhhhcCCCCCeEE
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNF-PCWLGNASSLQVLV  469 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~L~~L~  469 (650)
                      ....+|+++|.+. .+  ..|++++.|.+|.+.+|+|+.+.|.--..+++|+.|.|.+|.+.... ..-+..||+|++|.
T Consensus        43 ~~d~iDLtdNdl~-~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchh-hc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            6677888888765 33  33899999999999999999887776677899999999999887622 23467799999999


Q ss_pred             ccCcccceecCC-CCCCCCCCCCCeeeCCCcccc
Q 043523          470 LQSNNFSGHISC-PRNNVSWPLLQIVDLASNKFS  502 (650)
Q Consensus       470 l~~n~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~  502 (650)
                      +-+|+++....- ...+..+|+|+.||..+-...
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence            999998754311 235678899999999886543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.00  E-value=1.3e-07  Score=75.36  Aligned_cols=88  Identities=18%  Similarity=0.225  Sum_probs=66.9

Q ss_pred             CCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeE
Q 043523          558 VPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVL  637 (650)
Q Consensus       558 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  637 (650)
                      .++..+.+.+.+|.+++++.+ +..+++|+.|++++|++. ..|+.+..+.++-.||..+|.+..+..+.|.. ...-..
T Consensus        75 kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s-~~~al~  151 (177)
T KOG4579|consen   75 KFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYS-SLPALI  151 (177)
T ss_pred             ccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhcc-ccHHHH
Confidence            566777788888888855554 999999999999999999 77888888999999999999988665553321 333444


Q ss_pred             EccCCcCcccC
Q 043523          638 NLSYNNLVGKI  648 (650)
Q Consensus       638 ~l~~n~~~~~~  648 (650)
                      +++++|+.+.=
T Consensus       152 ~lgnepl~~~~  162 (177)
T KOG4579|consen  152 KLGNEPLGDET  162 (177)
T ss_pred             HhcCCcccccC
Confidence            55777777653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.99  E-value=9.3e-06  Score=52.28  Aligned_cols=36  Identities=44%  Similarity=0.580  Sum_probs=16.5

Q ss_pred             CCCEEeCCCCccccccchhhhcCCCCCeEEccCcccc
Q 043523          440 MLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS  476 (650)
Q Consensus       440 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  476 (650)
                      +|++|++++|++++ ++..+.+|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            44555555555554 2233445555555555555544

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.97  E-value=3.5e-05  Score=75.63  Aligned_cols=71  Identities=18%  Similarity=0.254  Sum_probs=42.5

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCC-ccccccchhhhcCCCCCeEE
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNN-HISDNFPCWLGNASSLQVLV  469 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~  469 (650)
                      .++.|++++|.+. .+|.  ++  .+|++|.+++|.-....|+.+  .++|+.|++++| .+.. .      .++|++|+
T Consensus        53 ~l~~L~Is~c~L~-sLP~--LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-L------P~sLe~L~  118 (426)
T PRK15386         53 ASGRLYIKDCDIE-SLPV--LP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-L------PESVRSLE  118 (426)
T ss_pred             CCCEEEeCCCCCc-ccCC--CC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-c------ccccceEE
Confidence            7788888888666 4441  22  258888887764333555544  357777777777 3332 2      24566667


Q ss_pred             ccCccc
Q 043523          470 LQSNNF  475 (650)
Q Consensus       470 l~~n~~  475 (650)
                      +..+..
T Consensus       119 L~~n~~  124 (426)
T PRK15386        119 IKGSAT  124 (426)
T ss_pred             eCCCCC
Confidence            665543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.95  E-value=1.1e-05  Score=52.03  Aligned_cols=38  Identities=45%  Similarity=0.590  Sum_probs=28.5

Q ss_pred             CCccEEEcCCCccccccchhcccCCCCCEEeCCCCcccc
Q 043523          415 CGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD  453 (650)
Q Consensus       415 ~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~  453 (650)
                      ++|++|++++|+|+ .++..++++++|++|++++|++++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            36888888888888 445568888888888888888886

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.86  E-value=9.7e-06  Score=72.77  Aligned_cols=224  Identities=22%  Similarity=0.190  Sum_probs=103.3

Q ss_pred             CCCcccEEEccCCcCcC----CCCCCCCCCCCCcEEEcCCCccc---c-------CCCcCccCCCCCcEEEccCCccccc
Q 043523           43 KNSSLRNLILSGTGFSG----TLPDSIGNLENLTWVEVRRCNFT---G-------PIPPSMANLTQLFHMDFSSNHFSGH  108 (650)
Q Consensus        43 ~l~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~~~l~---~-------~~~~~l~~l~~L~~L~l~~~~i~~~  108 (650)
                      .+..++.++|++|.|..    .+...+++-.+|+..+++.-...   .       .+..++.+|++|+..+|++|-+...
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            36677888888887763    23445566677777777653221   1       1223445667777777777665432


Q ss_pred             CC-----ccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCch
Q 043523          109 IP-----SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPE  183 (650)
Q Consensus       109 ~~-----~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  183 (650)
                      .+     -+.+-..|.+|.+.+|.+.-..... +++  .|.+|         ....-...-|.|+.....+|++......
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~r-igk--al~~l---------a~nKKaa~kp~Le~vicgrNRlengs~~  175 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGR-IGK--ALFHL---------AYNKKAADKPKLEVVICGRNRLENGSKE  175 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhH-HHH--HHHHH---------HHHhhhccCCCceEEEeccchhccCcHH
Confidence            22     2334466666666666553111111 110  00000         0001112334555555555544322211


Q ss_pred             hh---hcCCCCccEEEccCCcCCCC----CchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCC-CCCCCCCcEEEcc
Q 043523          184 IS---NVSSSVLFDLDLSGNRLEGP----VPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPI-LKNQSQLSGLDIS  255 (650)
Q Consensus       184 ~~---~~~~~~L~~L~l~~~~l~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-l~~~~~L~~L~l~  255 (650)
                      ..   ...-.+|+.+.+..|.+...    +...-+..+++|+.|++..|.++......     +.. +...+.|++|.+.
T Consensus       176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~-----La~al~~W~~lrEL~ln  250 (388)
T COG5238         176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY-----LADALCEWNLLRELRLN  250 (388)
T ss_pred             HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH-----HHHHhcccchhhhcccc
Confidence            11   00112444445544443311    00111245677777777777665321110     000 3334457777777


Q ss_pred             CCcCCCCCChhHHhh----cCcccceeeeccc
Q 043523          256 NNQIPGEIPNWIWEV----GNGNLNFLNLSHN  283 (650)
Q Consensus       256 ~~~i~~~~~~~~~~~----~~~~L~~L~l~~~  283 (650)
                      +|-+.......+...    ..++|..|....|
T Consensus       251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             chhhccccHHHHHHHhhhhcCCCccccccchh
Confidence            777665555544332    2334444444444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.85  E-value=2.1e-06  Score=90.78  Aligned_cols=86  Identities=23%  Similarity=0.215  Sum_probs=44.8

Q ss_pred             cCCCCCccEEEcCCCc-cccccchhccc-CCCCCEEeCCCCc-cccccchhh-hcCCCCCeEEccCcccceecCCCCCCC
Q 043523          411 FPRNCGLQILDLGGNQ-LQGVVPKSLAN-CNMLQVLDLKNNH-ISDNFPCWL-GNASSLQVLVLQSNNFSGHISCPRNNV  486 (650)
Q Consensus       411 ~~~l~~L~~L~ls~~~-i~~~~~~~~~~-l~~L~~L~Ls~n~-l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~  486 (650)
                      ...+.+|+.|+++++. +++..-.++.. |++|++|.+.+|. +++.....+ ..|+.|++|++++|...+..++.....
T Consensus       239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~  318 (482)
T KOG1947|consen  239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK  318 (482)
T ss_pred             hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH
Confidence            4445566666666665 54444444433 6666666666665 444333322 346666666666666543322233344


Q ss_pred             CCCCCCeeeC
Q 043523          487 SWPLLQIVDL  496 (650)
Q Consensus       487 ~~~~L~~L~l  496 (650)
                      ++++++.+.+
T Consensus       319 ~c~~l~~l~~  328 (482)
T KOG1947|consen  319 NCPNLRELKL  328 (482)
T ss_pred             hCcchhhhhh
Confidence            4555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.81  E-value=8.8e-05  Score=62.21  Aligned_cols=88  Identities=16%  Similarity=0.280  Sum_probs=47.5

Q ss_pred             CCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCC
Q 043523          406 LSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNN  485 (650)
Q Consensus       406 ~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  485 (650)
                      ++...|..+.+|+.+.+.. .+..+...+|..+++|+.+.+.++ +..+....|.++++++++.+.+ .+....  ...+
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~--~~~F   77 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIG--DNAF   77 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE---TTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccc--cccc
Confidence            4455577777788888775 455566677777777888887775 6665666677777788777765 333332  3445


Q ss_pred             CCCCCCCeeeCCC
Q 043523          486 VSWPLLQIVDLAS  498 (650)
Q Consensus       486 ~~~~~L~~L~l~~  498 (650)
                      ..+++|+.+++..
T Consensus        78 ~~~~~l~~i~~~~   90 (129)
T PF13306_consen   78 SNCTNLKNIDIPS   90 (129)
T ss_dssp             TT-TTECEEEETT
T ss_pred             cccccccccccCc
Confidence            5566666666644

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.78  E-value=6e-06  Score=88.20  Aligned_cols=137  Identities=18%  Similarity=0.197  Sum_probs=81.5

Q ss_pred             cccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEE
Q 043523          365 YFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVL  444 (650)
Q Consensus       365 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L  444 (650)
                      +|+.|++++..........-.+..+|+|+.|.+++-.+...-....+.++++|..||+|+++++..  .+++.+++|++|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            456666665443222222223333457777777766554333334466777788888888877643  667778888888


Q ss_pred             eCCCCcccc-ccchhhhcCCCCCeEEccCcccceecCC----CCCCCCCCCCCeeeCCCccccc
Q 043523          445 DLKNNHISD-NFPCWLGNASSLQVLVLQSNNFSGHISC----PRNNVSWPLLQIVDLASNKFSG  503 (650)
Q Consensus       445 ~Ls~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~~~L~~L~l~~n~~~~  503 (650)
                      .+.+=.+.. .....+.++++|+.|++|.-+.......    .+.-..+|.|+.||.|+..+..
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            777766664 2233556778888888887664422110    1223346788888888776653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.77  E-value=5.3e-06  Score=88.59  Aligned_cols=83  Identities=28%  Similarity=0.366  Sum_probs=34.2

Q ss_pred             CCCCCCEEeCCCCCCCCCCC-CCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCcccc-CCCcCccCCCCCc
Q 043523           19 QVPTLETLDLSENQLLQGSL-PNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTG-PIPPSMANLTQLF   96 (650)
Q Consensus        19 ~~~~L~~L~ls~~~i~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~   96 (650)
                      .+|.|+.|.+++-.+..... .....+|+|+.||+++++++..  .+++++++|++|.+.+-.+.. ..-..+-++++|+
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            44555555554444322211 1223344555555555444422  344444444444444443331 1111233444444


Q ss_pred             EEEccCC
Q 043523           97 HMDFSSN  103 (650)
Q Consensus        97 ~L~l~~~  103 (650)
                      +||+|..
T Consensus       224 vLDIS~~  230 (699)
T KOG3665|consen  224 VLDISRD  230 (699)
T ss_pred             eeecccc
Confidence            4444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.77  E-value=9e-05  Score=62.15  Aligned_cols=126  Identities=17%  Similarity=0.227  Sum_probs=61.6

Q ss_pred             cccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccC
Q 043523           12 KFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMAN   91 (650)
Q Consensus        12 ~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~   91 (650)
                      +...+|.++++|+.+.+.. .+.......|..+++|+.+.+.++ +......+|.++++++.+.+.+ .+.......|..
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence            3456788888888888875 456667778888878888888774 5534455777777788888865 444355567777


Q ss_pred             CCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccC
Q 043523           92 LTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNL  143 (650)
Q Consensus        92 l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L  143 (650)
                      +++|+.+++..+ +..+....+.-.+++.+.+..+ +. .+....|.++++|
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNCNLKEINIPSN-IT-KIEENAFKNCTKL  128 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT-T--EEE-TTB--S-S----GGG-----
T ss_pred             cccccccccCcc-ccEEchhhhcCCCceEEEECCC-cc-EECCccccccccC
Confidence            788888877654 4333333222236666666542 22 2333335555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.74  E-value=1.8e-06  Score=69.01  Aligned_cols=60  Identities=20%  Similarity=0.211  Sum_probs=28.8

Q ss_pred             CCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCccc
Q 043523          439 NMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKF  501 (650)
Q Consensus       439 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~  501 (650)
                      ..|+..+|++|.+.+..+..-...+..++|++.+|.+.+.   +..+..+|.|+.|+++.|++
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv---PeE~Aam~aLr~lNl~~N~l  112 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV---PEELAAMPALRSLNLRFNPL  112 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc---hHHHhhhHHhhhcccccCcc
Confidence            3444445555555552222222344555555555555422   44455555555555555554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.74  E-value=0.0002  Score=70.42  Aligned_cols=132  Identities=17%  Similarity=0.291  Sum_probs=65.3

Q ss_pred             CCcccEEEeccCcCCCCCCCCCCCccEEecCCC-cCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECc
Q 043523          294 ISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNN-HFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLS  372 (650)
Q Consensus       294 l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~  372 (650)
                      ++.++.|++++|.+... |..+.+++.|.++++ .++.+|..+   +++|+.|.+++|.....+|.      +|+.|+++
T Consensus        51 ~~~l~~L~Is~c~L~sL-P~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~  120 (426)
T PRK15386         51 ARASGRLYIKDCDIESL-PVLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SVRSLEIK  120 (426)
T ss_pred             hcCCCEEEeCCCCCccc-CCCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------ccceEEeC
Confidence            45677777777755544 355566777777663 345555433   35666666666632222332      35555555


Q ss_pred             Ccccc--ccCChhhhhccccCccEEEccCccCC--CcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCC
Q 043523          373 NNNLS--GTIPACLIAQSETTLGVLNLGRNNLN--GTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKN  448 (650)
Q Consensus       373 ~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~  448 (650)
                      ++...  ..+|.        +|+.|.+.+++..  ..++ ..++  ++|++|++++|... ..|..+.  .+|+.|+++.
T Consensus       121 ~n~~~~L~~LPs--------sLk~L~I~~~n~~~~~~lp-~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~  186 (426)
T PRK15386        121 GSATDSIKNVPN--------GLTSLSINSYNPENQARID-NLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI  186 (426)
T ss_pred             CCCCcccccCcc--------hHhheeccccccccccccc-cccC--CcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence            44321  12222        4555555432210  0001 0011  35666666666544 3333332  4666666665


Q ss_pred             C
Q 043523          449 N  449 (650)
Q Consensus       449 n  449 (650)
                      +
T Consensus       187 n  187 (426)
T PRK15386        187 E  187 (426)
T ss_pred             c
Confidence            4

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.36  E-value=0.00012  Score=66.10  Aligned_cols=107  Identities=18%  Similarity=0.195  Sum_probs=65.2

Q ss_pred             CCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCC--ccccCCCcCccCCCCCcEEEccCCcccc--cCCccccCCCc
Q 043523           43 KNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRC--NFTGPIPPSMANLTQLFHMDFSSNHFSG--HIPSLHKSRNL  118 (650)
Q Consensus        43 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~--~l~~~~~~~l~~l~~L~~L~l~~~~i~~--~~~~~~~~~~L  118 (650)
                      .+..|+.|++.+..++..  ..+..+++|++|.++.|  ++...++....++++|+++++++|++..  ..+.+..+.+|
T Consensus        41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            345566666666555422  34556667777777777  5555555555566777777777777653  22345556777


Q ss_pred             CEEeCCCCcCcc--cCChHHHhccccCCeEEccCC
Q 043523          119 KYLDLSFNNLSG--GISSTFWEQLVNLNLVLLSHN  151 (650)
Q Consensus       119 ~~L~l~~~~l~~--~~~~~~~~~l~~L~~L~l~~~  151 (650)
                      ..|++.+|..+.  ......|.-+++|++|+-...
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            788887776553  222344677788887775543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.30  E-value=3.1e-05  Score=81.88  Aligned_cols=224  Identities=20%  Similarity=0.128  Sum_probs=126.6

Q ss_pred             CccEEEccCccCCCc-CCCcccCCCCCccEEEcCCC-cccccc----chhcccCCCCCEEeCCCCc-cccccchhhhc-C
Q 043523          391 TLGVLNLGRNNLNGT-LSDTIFPRNCGLQILDLGGN-QLQGVV----PKSLANCNMLQVLDLKNNH-ISDNFPCWLGN-A  462 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~ls~~-~i~~~~----~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~-~  462 (650)
                      .|+.+.+.++.-... -.......++.|+.|+++++ ......    ......+++|+.|+++.+. +++.....+.. |
T Consensus       189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c  268 (482)
T KOG1947|consen  189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC  268 (482)
T ss_pred             hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence            555555555532212 11223556777888888763 211111    1234567999999999998 77766666655 9


Q ss_pred             CCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeec
Q 043523          463 SSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEV  542 (650)
Q Consensus       463 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  542 (650)
                      ++|++|.+.+|.-.+..++......+++|++|++++|.....   .   .+... ..   .+..++.+.....       
T Consensus       269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d---~---~l~~~-~~---~c~~l~~l~~~~~-------  331 (482)
T KOG1947|consen  269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD---S---GLEAL-LK---NCPNLRELKLLSL-------  331 (482)
T ss_pred             CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH---H---HHHHH-HH---hCcchhhhhhhhc-------
Confidence            999999999998433334466677899999999999876511   1   11111 11   1222222211100       


Q ss_pred             ceEEeeccchhhcccCCCcccEEeCCCCcc---ccCCCccccCCcCCCEEeCccccCcccC-CcCccCCCCC--------
Q 043523          543 GVTVTVKGVETMLLKVPNIFTSIDFSSNNF---EGPIPEEMGRFKSLYALNMSHNALTGSI-PSSFGNLKQI--------  610 (650)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~---~~~~~~~~~~l~~L~~L~ls~n~i~~~~-~~~~~~l~~L--------  610 (650)
                                    ..++.++.+.+.++..   .......+..++.++.+.+..+.+++.. ...+.+++.|        
T Consensus       332 --------------~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~  397 (482)
T KOG1947|consen  332 --------------NGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRL  397 (482)
T ss_pred             --------------CCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHh
Confidence                          1134455555544443   1233345677888888888888755333 2344555544        


Q ss_pred             ------CeeeCCCCcCCcc-CCccccC-CCCCCeEEccCCcCc
Q 043523          611 ------ESLDLSMNNLSGK-IPAQLAS-LNFLSVLNLSYNNLV  645 (650)
Q Consensus       611 ------~~L~l~~n~i~~~-~~~~l~~-l~~L~~L~l~~n~~~  645 (650)
                            +.|+++.|..... .-..... +..++.+++++++..
T Consensus       398 ~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  398 CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI  440 (482)
T ss_pred             ccCCccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence                  6666666654322 2222222 556677777766554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.26  E-value=0.00016  Score=65.22  Aligned_cols=112  Identities=25%  Similarity=0.251  Sum_probs=62.9

Q ss_pred             CCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCC--ccccc-CCccccCCCcCEEeCCCCcCcccCChHHH
Q 043523           61 LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSN--HFSGH-IPSLHKSRNLKYLDLSFNNLSGGISSTFW  137 (650)
Q Consensus        61 ~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~--~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  137 (650)
                      +......+..|+.+++.+..++.  -..|..+++|+.|.+++|  .+... ..-+-.+|+|+++++++|++...-...-+
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence            33444455566666666666652  123556777777777777  33322 22233447777777777776532122225


Q ss_pred             hccccCCeEEccCCcCCCC---cchhccCCCCCCEEEccC
Q 043523          138 EQLVNLNLVLLSHNSLNGS---IPRSLFLLPNLETLWLSN  174 (650)
Q Consensus       138 ~~l~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~l~~  174 (650)
                      ..+++|..|++..|.....   -...|.-+++|+.|+-..
T Consensus       113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            5666677777777755431   223345566776666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=2.2e-05  Score=70.79  Aligned_cols=100  Identities=27%  Similarity=0.298  Sum_probs=59.8

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccc-hhhhcCCCCCeEE
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFP-CWLGNASSLQVLV  469 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L~  469 (650)
                      +.++|++.||.+.+. .  ....|+.|++|.|+-|+|+..  ..+..|+.|++|+|..|.|.++.. ..+.++|+|++|.
T Consensus        20 ~vkKLNcwg~~L~DI-s--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI-S--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccHH-H--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            567777777776632 1  245666777777777777633  346667777777777777766332 3456677777777


Q ss_pred             ccCcccceecCC---CCCCCCCCCCCeee
Q 043523          470 LQSNNFSGHISC---PRNNVSWPLLQIVD  495 (650)
Q Consensus       470 l~~n~~~~~~~~---~~~~~~~~~L~~L~  495 (650)
                      |..|+-.+..+-   ...+.-+|+|++||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            777765432210   01233456666654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.27  E-value=3.8e-05  Score=78.53  Aligned_cols=60  Identities=32%  Similarity=0.411  Sum_probs=28.0

Q ss_pred             CCEEeCccccCccc----CCcCccCC-CCCCeeeCCCCcCCcc----CCccccCCCCCCeEEccCCcCc
Q 043523          586 LYALNMSHNALTGS----IPSSFGNL-KQIESLDLSMNNLSGK----IPAQLASLNFLSVLNLSYNNLV  645 (650)
Q Consensus       586 L~~L~ls~n~i~~~----~~~~~~~l-~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~n~~~  645 (650)
                      +.++++.+|++.+.    ....+..+ +.+++++++.|.++..    ..+.+..+++++.+.+++|++.
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            44455555554432    12222333 4445555555555442    2334444455555555555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.91  E-value=0.00047  Score=62.53  Aligned_cols=78  Identities=18%  Similarity=0.177  Sum_probs=33.6

Q ss_pred             EeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCcc-CCccccCCCCCCeEEccCCc
Q 043523          565 IDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK-IPAQLASLNFLSVLNLSYNN  643 (650)
Q Consensus       565 L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~  643 (650)
                      |++.+|.++++  ..+..++.|+.|.||-|+|+..  +.|..|++|+.|+|..|.|.++ --+.+.++|+|+.|.|..||
T Consensus        24 LNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   24 LNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             hcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence            44444444322  2233444444444444444422  2234444444444444444432 11234444444444444444


Q ss_pred             Ccc
Q 043523          644 LVG  646 (650)
Q Consensus       644 ~~~  646 (650)
                      ..|
T Consensus       100 Cc~  102 (388)
T KOG2123|consen  100 CCG  102 (388)
T ss_pred             ccc
Confidence            443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.96  E-value=0.0094  Score=51.84  Aligned_cols=85  Identities=19%  Similarity=0.099  Sum_probs=51.1

Q ss_pred             CccEEEcCCCccccccchhcccCCCCCEEeCCCCc-cccccchhhhc-CCCCCeEEccCcccceecCCCCCCCCCCCCCe
Q 043523          416 GLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNH-ISDNFPCWLGN-ASSLQVLVLQSNNFSGHISCPRNNVSWPLLQI  493 (650)
Q Consensus       416 ~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~  493 (650)
                      .++.++-+++.|..++-+.+..+++++.|.+.+|+ +.+...+.+.+ .++|+.|+|++|+-.+..+ ...+..+++|+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-HHHHHHhhhhHH
Confidence            47777777777776777777777777777777775 33322222222 5667777777666433322 334555666666


Q ss_pred             eeCCCccc
Q 043523          494 VDLASNKF  501 (650)
Q Consensus       494 L~l~~n~~  501 (650)
                      |.+.+-+.
T Consensus       181 L~l~~l~~  188 (221)
T KOG3864|consen  181 LHLYDLPY  188 (221)
T ss_pred             HHhcCchh
Confidence            66665443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.93  E-value=0.0093  Score=31.65  Aligned_cols=12  Identities=67%  Similarity=0.805  Sum_probs=5.6

Q ss_pred             CCeeeCCCCcCC
Q 043523          610 IESLDLSMNNLS  621 (650)
Q Consensus       610 L~~L~l~~n~i~  621 (650)
                      |++||+++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            444444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.82  E-value=0.011  Score=31.39  Aligned_cols=21  Identities=62%  Similarity=0.781  Sum_probs=14.3

Q ss_pred             CCCEEeCccccCcccCCcCccC
Q 043523          585 SLYALNMSHNALTGSIPSSFGN  606 (650)
Q Consensus       585 ~L~~L~ls~n~i~~~~~~~~~~  606 (650)
                      +|++|+|++|+++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4677888888777 55555554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.77  E-value=0.00036  Score=71.52  Aligned_cols=61  Identities=28%  Similarity=0.236  Sum_probs=34.4

Q ss_pred             CccEEEcCCCccccc----cchhcccCCCCCEEeCCCCccccc----cchhhh----cCCCCCeEEccCcccc
Q 043523          416 GLQILDLGGNQLQGV----VPKSLANCNMLQVLDLKNNHISDN----FPCWLG----NASSLQVLVLQSNNFS  476 (650)
Q Consensus       416 ~L~~L~ls~~~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~----~~~~L~~L~l~~n~~~  476 (650)
                      .+++|++..|.++..    +...+..+..+++++++.|.+...    .+..+.    ...++++|.+.+|.++
T Consensus       145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence            455566666665543    334555677777788887776531    112222    3455666666666654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.47  E-value=0.021  Score=28.02  Aligned_cols=16  Identities=44%  Similarity=0.632  Sum_probs=6.9

Q ss_pred             CCCeEEccCCcCcccCC
Q 043523          633 FLSVLNLSYNNLVGKIP  649 (650)
Q Consensus       633 ~L~~L~l~~n~~~~~~p  649 (650)
                      +|+.|++++|+++ ++|
T Consensus         2 ~L~~L~l~~n~L~-~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLT-SLP   17 (17)
T ss_dssp             T-SEEEETSS--S-SE-
T ss_pred             ccCEEECCCCCCC-CCc
Confidence            4566666666654 444

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.75  E-value=0.0083  Score=52.17  Aligned_cols=85  Identities=16%  Similarity=0.072  Sum_probs=43.0

Q ss_pred             CCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhh
Q 043523          440 MLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVA  519 (650)
Q Consensus       440 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~  519 (650)
                      .++.+|-+++.|.......+.++++++.|.+.+|+-.++.++...-.-.++|+.|++++|+-..+-...++..++.|...
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            44555555555555555555555555555555555443332222223345555555555554444555555555544444


Q ss_pred             hcccC
Q 043523          520 ETKSG  524 (650)
Q Consensus       520 ~~~~~  524 (650)
                      +...+
T Consensus       182 ~l~~l  186 (221)
T KOG3864|consen  182 HLYDL  186 (221)
T ss_pred             HhcCc
Confidence            44443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.86  E-value=0.085  Score=29.30  Aligned_cols=23  Identities=39%  Similarity=0.527  Sum_probs=14.6

Q ss_pred             CCCCCeeeCCCCcCCccCCcccc
Q 043523          607 LKQIESLDLSMNNLSGKIPAQLA  629 (650)
Q Consensus       607 l~~L~~L~l~~n~i~~~~~~~l~  629 (650)
                      +++|++|++++|++..+++..|+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35667777777777766555554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.86  E-value=0.085  Score=29.30  Aligned_cols=23  Identities=39%  Similarity=0.527  Sum_probs=14.6

Q ss_pred             CCCCCeeeCCCCcCCccCCcccc
Q 043523          607 LKQIESLDLSMNNLSGKIPAQLA  629 (650)
Q Consensus       607 l~~L~~L~l~~n~i~~~~~~~l~  629 (650)
                      +++|++|++++|++..+++..|+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35667777777777766555554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.95  E-value=0.073  Score=28.89  Aligned_cols=15  Identities=53%  Similarity=0.764  Sum_probs=6.7

Q ss_pred             CCCCEEeCCCCcccc
Q 043523          439 NMLQVLDLKNNHISD  453 (650)
Q Consensus       439 ~~L~~L~Ls~n~l~~  453 (650)
                      ++|++|+|++|++++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            445555555555544

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.03  E-value=0.0039  Score=55.21  Aligned_cols=91  Identities=13%  Similarity=0.115  Sum_probs=59.6

Q ss_pred             CCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccCCccccCC
Q 043523           37 SLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSR  116 (650)
Q Consensus        37 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~  116 (650)
                      ....+..++..+.||++.|.+. .+...|.-+..|..|+++.|.+. .+|..+.....++.++++.|..+..|..+.+.+
T Consensus        34 ~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~  111 (326)
T KOG0473|consen   34 PVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEP  111 (326)
T ss_pred             chhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccC
Confidence            3345555666667777666554 44455556666677777777766 667777767777777777776666666667777


Q ss_pred             CcCEEeCCCCcCc
Q 043523          117 NLKYLDLSFNNLS  129 (650)
Q Consensus       117 ~L~~L~l~~~~l~  129 (650)
                      .++++++.++.+.
T Consensus       112 ~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  112 HPKKNEQKKTEFF  124 (326)
T ss_pred             CcchhhhccCcch
Confidence            7777777666654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.55  E-value=0.0047  Score=54.72  Aligned_cols=94  Identities=20%  Similarity=0.151  Sum_probs=79.1

Q ss_pred             cccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCc
Q 043523           10 QGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSM   89 (650)
Q Consensus        10 ~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l   89 (650)
                      ..+....+..+.+.+.||++.|+. ...-..|..+..+..|+++.|.+. ..|..+.....++.+++.+|... ..|.++
T Consensus        31 s~~~v~ei~~~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~  107 (326)
T KOG0473|consen   31 SEIPVREIASFKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQ  107 (326)
T ss_pred             cccchhhhhccceeeeehhhhhHH-HhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccc
Confidence            344566788899999999999987 333346777788899999999888 88888999999999999999888 899999


Q ss_pred             cCCCCCcEEEccCCccc
Q 043523           90 ANLTQLFHMDFSSNHFS  106 (650)
Q Consensus        90 ~~l~~L~~L~l~~~~i~  106 (650)
                      ...++++++++-++.+.
T Consensus       108 ~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  108 KKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             cccCCcchhhhccCcch
Confidence            99999999999988754

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.17  E-value=0.27  Score=27.24  Aligned_cols=21  Identities=38%  Similarity=0.395  Sum_probs=11.7

Q ss_pred             CCCCEEeCCCCccccccchhh
Q 043523          439 NMLQVLDLKNNHISDNFPCWL  459 (650)
Q Consensus       439 ~~L~~L~Ls~n~l~~~~~~~~  459 (650)
                      ++|+.|+|++|++..+.+..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456666666666665444433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.17  E-value=0.27  Score=27.24  Aligned_cols=21  Identities=38%  Similarity=0.395  Sum_probs=11.7

Q ss_pred             CCCCEEeCCCCccccccchhh
Q 043523          439 NMLQVLDLKNNHISDNFPCWL  459 (650)
Q Consensus       439 ~~L~~L~Ls~n~l~~~~~~~~  459 (650)
                      ++|+.|+|++|++..+.+..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456666666666665444433

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.89  E-value=0.099  Score=28.36  Aligned_cols=22  Identities=36%  Similarity=0.447  Sum_probs=13.4

Q ss_pred             CCCccEEEcCCCccccccchhc
Q 043523          414 NCGLQILDLGGNQLQGVVPKSL  435 (650)
Q Consensus       414 l~~L~~L~ls~~~i~~~~~~~~  435 (650)
                      +++|++|++++|+|++....++
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            4578888888888876655544

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=89.71  E-value=0.23  Score=27.33  Aligned_cols=18  Identities=39%  Similarity=0.516  Sum_probs=11.7

Q ss_pred             CCCCeEEccCCcCcccCCC
Q 043523          632 NFLSVLNLSYNNLVGKIPT  650 (650)
Q Consensus       632 ~~L~~L~l~~n~~~~~~p~  650 (650)
                      ++|+.|++++|+++ ++||
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            35667777777766 5664

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=81.82  E-value=8.5  Score=38.78  Aligned_cols=60  Identities=23%  Similarity=0.242  Sum_probs=31.2

Q ss_pred             ccEEEcCCCccccccch---hcccCCCCCEEeCCCCccccc----cchhhhcCCCCCeEEccCcccc
Q 043523          417 LQILDLGGNQLQGVVPK---SLANCNMLQVLDLKNNHISDN----FPCWLGNASSLQVLVLQSNNFS  476 (650)
Q Consensus       417 L~~L~ls~~~i~~~~~~---~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~  476 (650)
                      +..+.++.|........   ....-+.+..|++++|...+.    .+.......+++....+.|..+
T Consensus       415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~  481 (553)
T KOG4242|consen  415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE  481 (553)
T ss_pred             ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence            56666666665522211   223345677777777766652    2233333455555555555443

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=80.33  E-value=1.2  Score=25.26  Aligned_cols=16  Identities=44%  Similarity=0.648  Sum_probs=10.4

Q ss_pred             CCCCEEeCCCCccccc
Q 043523          439 NMLQVLDLKNNHISDN  454 (650)
Q Consensus       439 ~~L~~L~Ls~n~l~~~  454 (650)
                      ++|++|+|++|.+.+.
T Consensus         2 ~~L~~LdL~~N~i~~~   17 (28)
T smart00368        2 PSLRELDLSNNKLGDE   17 (28)
T ss_pred             CccCEEECCCCCCCHH
Confidence            4567777777776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	650
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-31
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-20
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-15
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-31
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		8e-20
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		8e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-10
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		9e-07
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-05

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 165/659 (25%), Positives = 260/659 (39%), Gaps = 147/659 (22%)
Query: 13  FPEKI---LQVPTLETLDLSENQLLQGSLPNF---PKNSSLRNLILSGTGFSGTLPDSIG 66
           FP K+   L++ +LE LDLS N +   ++  +        L++L +SG   SG       
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD------ 193
Query: 67  NLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFN 126
                  V+V RC               L  +D SSN+FS  IP L     L++LD+S N
Sbjct: 194 -------VDVSRC-------------VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN 233
Query: 127 NLSGGISSTFWEQXXXXXXXXXXXXXXXGSIPRSLFLLPNLETLWLSNNQFENQLPEIXX 186
            LSG  S                         R++     L+ L +S+NQF   +P    
Sbjct: 234 KLSGDFS-------------------------RAISTCTELKLLNISSNQFVGPIP---- 264
Query: 187 XXXXXXXXXXXXGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQ 246
                             P+P      L++L  L L+ NKF+           IP   + 
Sbjct: 265 ------------------PLP------LKSLQYLSLAENKFTG---------EIPDFLSG 291
Query: 247 S--QLSGLDISNNQIPGEIPNWIWEXXXXXXXXXXXXXXXXXXXQEPY-SISSIRLLDLH 303
           +   L+GLD+S N   G +P +                       +    +  +++LDL 
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351
Query: 304 SNQLRGNIPHMSTNTSY----VDYSNNHFT--FIPADIGNFMSETEYFFAANNSLVGVIP 357
            N+  G +P   TN S     +D S+N+F+   +P    N  +  +  +  NN   G IP
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Query: 358 ESVCKGIYFQVLDLSNNNLSGTIPACLIAQSEXXXXXXXXXXXXXXXXXSDTIFPRNCGL 417
            ++        L LS N LSGTIP+ L + S+                  + ++ +    
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP-QELMYVKTLET 470
Query: 418 QILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSG 477
            ILD   N L G +P  L+NC  L  + L NN ++   P W+G   +L +L L +N+FSG
Sbjct: 471 LILDF--NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528
Query: 478 HISCPRNNVSWPLLQIVDLASNKFSGRL-----------------SQKWLLTMEEMMVAE 520
           +I  P        L  +DL +N F+G +                  ++++    + M  E
Sbjct: 529 NI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586
Query: 521 TKSGSELKHLRYVIS--------------SNQFYXXXXXXXXXXXXXMLLKVPNIFTSID 566
                 L   + + S              +++ Y             M+         +D
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF--------LD 638
Query: 567 FSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 625
            S N   G IP+E+G    L+ LN+ HN ++GSIP   G+L+ +  LDLS N L G+IP
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 143/544 (26%), Positives = 211/544 (38%), Gaps = 88/544 (16%)
Query: 100 FSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQXXXXXXXXXXXXXXXGSIPR 159
            S++H +G +     S +L  LDLS N+LSG ++ T                      P 
Sbjct: 84  LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 160 SL---FLLPNLETLWLSNNQFE--NQLPEIXXXXXXXXXXXXXXGNRLEGPVPISIIFEL 214
            +     L +LE L LS N     N +  +              GN++ G V +S     
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS---RC 199
Query: 215 RNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEXXXXX 274
            NL  LD+SSN FS           IP L + S L  LDIS N++ G+    I       
Sbjct: 200 VNLEFLDVSSNNFST---------GIPFLGDCSALQHLDISGNKLSGDFSRAI--STCTE 248
Query: 275 XXXXXXXXXXXXXXQEPYSISSIRLLDLHSNQLRGNIPHMSTNT----SYVDYSNNHF-T 329
                           P  + S++ L L  N+  G IP   +      + +D S NHF  
Sbjct: 249 LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 330 FIPADIGNFMSETEYFFAANNSLVGVIP-ESVCKGIYFQVLDLSNNNLSGTIPACLIAQS 388
            +P   G+         ++NN   G +P +++ K    +VLDLS N  SG +P  L   S
Sbjct: 309 AVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Query: 389 EXXXXXXXXXXXXXXXXXSDTIFPRNC-----GLQILDLGGNQLQGVVPKSLANCNMLQV 443
                             S  I P  C      LQ L L  N   G +P +L+NC+ L  
Sbjct: 368 ASLLTLDLSSNNF-----SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422
Query: 444 LDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSG 503
           L L  N++S   P  LG+ S L+ L L  N   G I  P+  +    L+ + L  N  +G
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDLTG 480
Query: 504 RLSQKWLLTMEEMMVAETKSG-SELKHLRYVISSNQFYXXXXXXXXXXXXXMLLKVPNIF 562
                           E  SG S   +L +                              
Sbjct: 481 ----------------EIPSGLSNCTNLNW------------------------------ 494
Query: 563 TSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG 622
             I  S+N   G IP+ +GR ++L  L +S+N+ +G+IP+  G+ + +  LDL+ N  +G
Sbjct: 495 --ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 623 KIPA 626
            IPA
Sbjct: 553 TIPA 556

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 149/357 (41%), Gaps = 55/357 (15%)
Query: 297 IRLLDLHSNQLRGNIP-HMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGV 355
           ++ L +  N++ G++      N  ++D S+N+F+     +G+  S  ++   + N L G 
Sbjct: 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGD-CSALQHLDISGNKLSGD 238
Query: 356 IPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSEXXXXXXXXXXXXXXXXXSDTIFPRNC 415
              ++      ++L++S+N   G IP   +                              
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIPPLPLKS---------------------------- 270
Query: 416 GLQILDLGGNQLQGVVPKSLAN-CNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNN 474
            LQ L L  N+  G +P  L+  C+ L  LDL  NH     P + G+ S L+ L L SNN
Sbjct: 271 -LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329
Query: 475 FSGHISCPRNNV-SWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV 533
           FSG +  P + +     L+++DL+ N+FSG L +        ++  +             
Sbjct: 330 FSGEL--PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD------------- 374
Query: 534 ISSNQFYXXXXXXXXXXXXXMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSH 593
           +SSN F              +     N    +   +N F G IP  +     L +L++S 
Sbjct: 375 LSSNNF-------SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 594 NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQXXXXXXXXXXXXXXXXXVGKIPT 650
           N L+G+IPSS G+L ++  L L +N L G+IP +                  G+IP+
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  133 bits (334), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 165/659 (25%), Positives = 260/659 (39%), Gaps = 147/659 (22%)
Query: 13  FPEKI---LQVPTLETLDLSENQLLQGSLPNF---PKNSSLRNLILSGTGFSGTLPDSIG 66
           FP K+   L++ +LE LDLS N +   ++  +        L++L +SG   SG       
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD------ 190
Query: 67  NLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFN 126
                  V+V RC               L  +D SSN+FS  IP L     L++LD+S N
Sbjct: 191 -------VDVSRC-------------VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN 230
Query: 127 NLSGGISSTFWEQXXXXXXXXXXXXXXXGSIPRSLFLLPNLETLWLSNNQFENQLPEIXX 186
            LSG  S                         R++     L+ L +S+NQF   +P    
Sbjct: 231 KLSGDFS-------------------------RAISTCTELKLLNISSNQFVGPIP---- 261
Query: 187 XXXXXXXXXXXXGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQ 246
                             P+P      L++L  L L+ NKF+           IP   + 
Sbjct: 262 ------------------PLP------LKSLQYLSLAENKFTG---------EIPDFLSG 288
Query: 247 S--QLSGLDISNNQIPGEIPNWIWEXXXXXXXXXXXXXXXXXXXQEPY-SISSIRLLDLH 303
           +   L+GLD+S N   G +P +                       +    +  +++LDL 
Sbjct: 289 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 348
Query: 304 SNQLRGNIPHMSTNTSY----VDYSNNHFT--FIPADIGNFMSETEYFFAANNSLVGVIP 357
            N+  G +P   TN S     +D S+N+F+   +P    N  +  +  +  NN   G IP
Sbjct: 349 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Query: 358 ESVCKGIYFQVLDLSNNNLSGTIPACLIAQSEXXXXXXXXXXXXXXXXXSDTIFPRNCGL 417
            ++        L LS N LSGTIP+ L + S+                  + ++ +    
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP-QELMYVKTLET 467
Query: 418 QILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSG 477
            ILD   N L G +P  L+NC  L  + L NN ++   P W+G   +L +L L +N+FSG
Sbjct: 468 LILDF--NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 525
Query: 478 HISCPRNNVSWPLLQIVDLASNKFSGRL-----------------SQKWLLTMEEMMVAE 520
           +I  P        L  +DL +N F+G +                  ++++    + M  E
Sbjct: 526 NI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 583
Query: 521 TKSGSELKHLRYVIS--------------SNQFYXXXXXXXXXXXXXMLLKVPNIFTSID 566
                 L   + + S              +++ Y             M+         +D
Sbjct: 584 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF--------LD 635
Query: 567 FSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 625
            S N   G IP+E+G    L+ LN+ HN ++GSIP   G+L+ +  LDLS N L G+IP
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 694

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 143/544 (26%), Positives = 211/544 (38%), Gaps = 88/544 (16%)
Query: 100 FSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQXXXXXXXXXXXXXXXGSIPR 159
            S++H +G +     S +L  LDLS N+LSG ++ T                      P 
Sbjct: 81  LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 160 SL---FLLPNLETLWLSNNQFE--NQLPEIXXXXXXXXXXXXXXGNRLEGPVPISIIFEL 214
            +     L +LE L LS N     N +  +              GN++ G V +S     
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS---RC 196
Query: 215 RNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEXXXXX 274
            NL  LD+SSN FS           IP L + S L  LDIS N++ G+    I       
Sbjct: 197 VNLEFLDVSSNNFST---------GIPFLGDCSALQHLDISGNKLSGDFSRAI--STCTE 245
Query: 275 XXXXXXXXXXXXXXQEPYSISSIRLLDLHSNQLRGNIPHMSTNT----SYVDYSNNHF-T 329
                           P  + S++ L L  N+  G IP   +      + +D S NHF  
Sbjct: 246 LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305
Query: 330 FIPADIGNFMSETEYFFAANNSLVGVIP-ESVCKGIYFQVLDLSNNNLSGTIPACLIAQS 388
            +P   G+         ++NN   G +P +++ K    +VLDLS N  SG +P  L   S
Sbjct: 306 AVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Query: 389 EXXXXXXXXXXXXXXXXXSDTIFPRNC-----GLQILDLGGNQLQGVVPKSLANCNMLQV 443
                             S  I P  C      LQ L L  N   G +P +L+NC+ L  
Sbjct: 365 ASLLTLDLSSNNF-----SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 419
Query: 444 LDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSG 503
           L L  N++S   P  LG+ S L+ L L  N   G I  P+  +    L+ + L  N  +G
Sbjct: 420 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDLTG 477
Query: 504 RLSQKWLLTMEEMMVAETKSG-SELKHLRYVISSNQFYXXXXXXXXXXXXXMLLKVPNIF 562
                           E  SG S   +L +                              
Sbjct: 478 ----------------EIPSGLSNCTNLNW------------------------------ 491
Query: 563 TSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG 622
             I  S+N   G IP+ +GR ++L  L +S+N+ +G+IP+  G+ + +  LDL+ N  +G
Sbjct: 492 --ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Query: 623 KIPA 626
            IPA
Sbjct: 550 TIPA 553

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 149/357 (41%), Gaps = 55/357 (15%)
Query: 297 IRLLDLHSNQLRGNIP-HMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGV 355
           ++ L +  N++ G++      N  ++D S+N+F+     +G+  S  ++   + N L G 
Sbjct: 177 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGD-CSALQHLDISGNKLSGD 235
Query: 356 IPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSEXXXXXXXXXXXXXXXXXSDTIFPRNC 415
              ++      ++L++S+N   G IP   +                              
Sbjct: 236 FSRAISTCTELKLLNISSNQFVGPIPPLPLKS---------------------------- 267
Query: 416 GLQILDLGGNQLQGVVPKSLAN-CNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNN 474
            LQ L L  N+  G +P  L+  C+ L  LDL  NH     P + G+ S L+ L L SNN
Sbjct: 268 -LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 326
Query: 475 FSGHISCPRNNV-SWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV 533
           FSG +  P + +     L+++DL+ N+FSG L +        ++  +             
Sbjct: 327 FSGEL--PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD------------- 371
Query: 534 ISSNQFYXXXXXXXXXXXXXMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSH 593
           +SSN F              +     N    +   +N F G IP  +     L +L++S 
Sbjct: 372 LSSNNF-------SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 594 NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQXXXXXXXXXXXXXXXXXVGKIPT 650
           N L+G+IPSS G+L ++  L L +N L G+IP +                  G+IP+
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 89/187 (47%), Gaps = 11/187 (5%)
Query: 2   LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLI---LSGTGFS 58
           L ++   + G  P+ + Q+ TL TLD S N L  G+LP  P  SSL NL+     G   S
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLP--PSISSLPNLVGITFDGNRIS 162
Query: 59  GTLPDSIGNLENL-TWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKS-R 116
           G +PDS G+   L T + + R   TG IPP+ ANL   F +D S N   G    L  S +
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF-VDLSRNMLEGDASVLFGSDK 221
Query: 117 NLKYLDLSFNNLSGGISSTFWEQXXXXXXXXXXXXXXXGSIPRSLFLLPNLETLWLSNNQ 176
           N + + L+ N+L+  +      +               G++P+ L  L  L +L +S N 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 177 FENQLPE 183
              ++P+
Sbjct: 280 LCGEIPQ 286

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 56/282 (19%)
Query: 331 IPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSEX 390
           IP+ + N       +    N+LVG IP ++ K      L +++ N+SG IP   ++Q + 
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKT 126
Query: 391 XXXXXXXXXXXXXXXXSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNH 450
                                     L  LD   N L G +P S+++   L  +    N 
Sbjct: 127 --------------------------LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 451 ISDNFPCWLGNASSL-QVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKW 509
           IS   P   G+ S L   + +  N  +G I     N++   L  VDL+ N   G  S  +
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN---LAFVDLSRNMLEGDASVLF 217
Query: 510 LLTMEEMMVAETKSGSELKHLRYVISSNQFYXXXXXXXXXXXXXMLLKVPNIFTSIDFSS 569
                   +   K+       +  +S N                           +D  +
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKN------------------------LNGLDLRN 253
Query: 570 NNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIE 611
           N   G +P+ + + K L++LN+S N L G IP   GNL++ +
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFD 294

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 570 NNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 625
           NN  GPIP  + +   L+ L ++H  ++G+IP     +K + +LD S N LSG +P
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	650
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-151
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-141
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-90
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-33
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-68
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-63
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-60
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-59
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-52
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-33
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-23
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-37
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  455 bits (1174), Expect = e-151
 Identities = 182/672 (27%), Positives = 301/672 (44%), Gaps = 49/672 (7%)

Query: 1   TLDLSECGLQ---GKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGF 57
           ++DLS   L          +L +  LE+L LS + +  GS+  F  ++SL +L LS    
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI-NGSVSGFKCSASLTSLDLSRNSL 112

Query: 58  SGTLPD--SIGNLENLTWVEVRRCNFTGPIP-PSMANLTQLFHMDFSSNHFSGHIPS--- 111
           SG +    S+G+   L ++ V       P        L  L  +D S+N  SG       
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172

Query: 112 -LHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETL 170
                  LK+L +S N +SG +  +    L  L+   +S N+ +  IP  L     L+ L
Sbjct: 173 LSDGCGELKHLAISGNKISGDVDVSRCVNLEFLD---VSSNNFSTGIP-FLGDCSALQHL 228

Query: 171 WLSNNQFENQLP-EISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSR 229
            +S N+        IS  +   L  L++S N+  GP+P      L++L  L L+ NKF+ 
Sbjct: 229 DISGNKLSGDFSRAISTCTE--LKLLNISSNQFVGPIPPLP---LKSLQYLSLAENKFT- 282

Query: 230 LRLASSKPRVIP--ILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLL-- 285
                     IP  +      L+GLD+S N   G +P +        L  L LS N    
Sbjct: 283 --------GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC--SLLESLALSSNNFSG 332

Query: 286 -VSLQEPYSISSIRLLDLHSNQLRGNIP----HMSTNTSYVDYSNNHFT-FIPADIGNF- 338
            + +     +  +++LDL  N+  G +P    ++S +   +D S+N+F+  I  ++    
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392

Query: 339 MSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLG 398
            +  +  +  NN   G IP ++        L LS N LSGTIP+ L + S+  L  L L 
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK--LRDLKLW 450

Query: 399 RNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCW 458
            N L G +   +      L+ L L  N L G +P  L+NC  L  + L NN ++   P W
Sbjct: 451 LNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509

Query: 459 LGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMV 518
           +G   +L +L L +N+FSG+I  P        L  +DL +N F+G +    +      + 
Sbjct: 510 IGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIP-AAMFKQSGKIA 566

Query: 519 AETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPE 578
           A   +G    +++      + +  G  +  +G+ +  L   +     + +S  + G    
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

Query: 579 EMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLN 638
                 S+  L+MS+N L+G IP   G++  +  L+L  N++SG IP ++  L  L++L+
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686

Query: 639 LSYNNLVGKIPT 650
           LS N L G+IP 
Sbjct: 687 LSSNKLDGRIPQ 698

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  429 bits (1106), Expect = e-141
 Identities = 189/667 (28%), Positives = 280/667 (41%), Gaps = 65/667 (9%)

Query: 1   TLDLSECGLQGKFPEK--ILQVPTLETLDLSENQL-LQGSLPNFPKNSSLRNLILSGTGF 57
           +LDLS   L G       +     L+ L++S N L   G +    K +SL  L LS    
Sbjct: 104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163

Query: 58  SGTLPDSI---GNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHK 114
           SG              L  + +     +G +  S      L  +D SSN+FS  IP L  
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPFLGD 221

Query: 115 SRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSN 174
              L++LD+S N LSG  S         L L+ +S N   G IP     L +L+ L L+ 
Sbjct: 222 CSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAE 278

Query: 175 NQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLAS 234
           N+F  ++P+  + +   L  LDLSGN   G VP         L +L LSSN FS      
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSG----- 332

Query: 235 SKPRVIP--ILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEP- 291
                +P   L     L  LD+S N+  GE+P  +  + + +L  L+LS N       P 
Sbjct: 333 ----ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL-SASLLTLDLSSNNFSGPILPN 387

Query: 292 ---YSISSIRLLDLHSNQLRGNIPHMSTNTS---YVDYSNNHFT-FIPADIGNFMSETEY 344
                 ++++ L L +N   G IP   +N S    +  S N+ +  IP+ +G+ +S+   
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRD 446

Query: 345 FFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNG 404
                N L G IP+ +      + L L  N+L+G IP+ L   + T L  ++L  N L G
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS--NCTNLNWISLSNNRLTG 504

Query: 405 TLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASS 464
            +   I  R   L IL L  N   G +P  L +C  L  LDL  N  +   P  +   S 
Sbjct: 505 EIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563

Query: 465 LQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSG 524
                + +N  +G       N              +F G  S               +  
Sbjct: 564 K----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS---------------EQL 604

Query: 525 SELKHLRYV-ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRF 583
           + L       I+S  +          G  +           +D S N   G IP+E+G  
Sbjct: 605 NRLSTRNPCNITSRVY---------GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655

Query: 584 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 643
             L+ LN+ HN ++GSIP   G+L+ +  LDLS N L G+IP  +++L  L+ ++LS NN
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715

Query: 644 LVGKIPT 650
           L G IP 
Sbjct: 716 LSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  314 bits (806), Expect = 3e-97
 Identities = 163/617 (26%), Positives = 250/617 (40%), Gaps = 89/617 (14%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            L +S   + G     + +   LE LD+S N      +P     S+L++L +SG   SG 
Sbjct: 182 HLAISGNKISGDVD--VSRCVNLEFLDVSSNNF-STGIPFLGDCSALQHLDISGNKLSGD 238

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPS--LHKSRNL 118
              +I     L  + +    F GPIPP    L  L ++  + N F+G IP         L
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTL 296

Query: 119 KYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPR-SLFLLPNLETLWLSNNQF 177
             LDLS N+  G +   F      L  + LS N+ +G +P  +L  +  L+ L LS N+F
Sbjct: 297 TGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

Query: 178 ENQLP-EISNVSSSVLFDLDLSGNRLEGPVPISII-FELRNLYTLDLSSNKFSRLRLASS 235
             +LP  ++N+S+S L  LDLS N   GP+  ++       L  L L +N F+       
Sbjct: 356 SGELPESLTNLSAS-LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG------ 408

Query: 236 KPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSI- 294
             ++ P L N S+L  L +S N + G IP+ +       L  L L  N+L   + P  + 
Sbjct: 409 --KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS--LSKLRDLKLWLNML-EGEIPQELM 463

Query: 295 --SSIRLLDLHSNQLRGNIPH---MSTNTSYVDYSNNHFT-FIPADIGNFMSETEYFFAA 348
              ++  L L  N L G IP      TN +++  SNN  T  IP  IG  +        +
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLS 522

Query: 349 NNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSD 408
           NNS  G IP  +        LDL+ N  +GTIPA +  QS        +  N + G    
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS------GKIAANFIAGKRYV 576

Query: 409 TIFPRNCGLQILDLGGN--QLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQ 466
            I   +   +     GN  + QG+  + L   +     ++ +     +      N  S+ 
Sbjct: 577 YI-KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635

Query: 467 VLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSE 526
            L +  N  SG+I  P+   S P L I++L  N  SG +                    +
Sbjct: 636 FLDMSYNMLSGYI--PKEIGSMPYLFILNLGHNDISGSIPD---------------EVGD 678

Query: 527 LKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSL 586
           L+ L                                  +D SSN  +G IP+ M     L
Sbjct: 679 LRGL--------------------------------NILDLSSNKLDGRIPQAMSALTML 706

Query: 587 YALNMSHNALTGSIPSS 603
             +++S+N L+G IP  
Sbjct: 707 TEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  127 bits (322), Expect = 7e-31
 Identities = 61/237 (25%), Positives = 102/237 (43%), Gaps = 29/237 (12%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKN-SSLRNLILSGTGFSG 59
            + LS   L G+ P+ I ++  L  L LS N    G++P    +  SL  L L+   F+G
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSF-SGNIPAELGDCRSLIWLDLNTNLFNG 552

Query: 60  TLPDSIGNLENLTW----------------------VEVRRCNFTGPIPPSMANLTQLFH 97
           T+P ++                                     F G     +  L+    
Sbjct: 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612

Query: 98  MDFSSNHFSGHIPSLHKS-RNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGS 156
            + +S  + GH      +  ++ +LD+S+N LSG I       +  L ++ L HN ++GS
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGS 671

Query: 157 IPRSLFLLPNLETLWLSNNQFENQLP-EISNVSSSVLFDLDLSGNRLEGPVPISIIF 212
           IP  +  L  L  L LS+N+ + ++P  +S ++   L ++DLS N L GP+P    F
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM--LTEIDLSNNNLSGPIPEMGQF 726

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.8 bits (182), Expect = 8e-14
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 563 TSIDFSSNNFE---GPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNN 619
           TSID SS         +   +     L +L +S++ + GS+   F     + SLDLS N+
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNS 111

Query: 620 LSGKIPA--QLASLNFLSVLNLSYNNLVGKIP 649
           LSG +     L S + L  LN+S N L     
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.2 bits (144), Expect = 3e-09
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 581 GRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLS 640
            +  S+   +   N    ++ SS  +L  +ESL LS ++++G +         L+ L+LS
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 641 YNNLVGKIPT 650
            N+L G + T
Sbjct: 109 RNSLSGPVTT 118

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  294 bits (755), Expect = 1e-90
 Identities = 124/652 (19%), Positives = 236/652 (36%), Gaps = 52/652 (7%)

Query: 22  TLETLDLSENQLLQGSLPNFPKN--SSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRC 79
           + E  D S  +L Q      P +  +++  L L+          +      LT ++V   
Sbjct: 5   SHEVADCSHLKLTQ-----VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 80  NFTGPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWE 138
             +   P     L  L  ++   N  S     +     NL  L L  N++    ++ F  
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF-V 118

Query: 139 QLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPE-ISNVSSSVLFDLDL 197
           +  NL  + LSHN L+ +   +   L NL+ L LSNN+ +    E +   ++S L  L+L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 198 SGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNN 257
           S N+++   P      +  L+ L L++ +        S    + +    + +  L +SN+
Sbjct: 179 SSNQIKEFSP-GCFHAIGRLFGLFLNNVQLG-----PSLTEKLCLELANTSIRNLSLSNS 232

Query: 258 QIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEP--YSISSIRLLDLHSNQLRGNIP--- 312
           Q+          +   NL  L+LS+N L  +       +  +    L  N ++       
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 313 ---------HMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKG 363
                    ++  + +    S      I      ++   E+    +N + G+        
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352

Query: 364 IYFQVLDLSNNNLSGT--IPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILD 421
           I  + L LSN+  S         ++ + + L +LNL +N ++   SD  F     L++LD
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA-FSWLGHLEVLD 411

Query: 422 LGGNQLQGVVPKS-LANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHIS 480
           LG N++   +          +  + L  N              SLQ L+L+        S
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471

Query: 481 CPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV-ISSNQF 539
            P        L I+DL++N  +  ++   L                L+ L  + +  N  
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIAN-INDDML--------------EGLEKLEILDLQHNNL 516

Query: 540 YEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGS 599
             +       G    L  + ++   ++  SN F+    E       L  +++  N L   
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHL-HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575

Query: 600 IPSSFGNLKQIESLDLSMNNLSGKIPAQLA-SLNFLSVLNLSYNNLVGKIPT 650
             S F N   ++SL+L  N ++         +   L+ L++ +N       +
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  236 bits (604), Expect = 6e-69
 Identities = 126/677 (18%), Positives = 219/677 (32%), Gaps = 73/677 (10%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            L+L+   L+        +   L +LD+  N + +       K   L+ L L     S  
Sbjct: 29  VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL 88

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLK 119
              +     NLT + +   +              L  +D S N  S     +  +  NL+
Sbjct: 89  SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148

Query: 120 YLDLSFNNLSGGISSTF-WEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFE 178
            L LS N +    S         +L  + LS N +    P     +  L  L+L+N Q  
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208

Query: 179 NQLPEI--SNVSSSVLFDLDLSGNRLEGPVPISII-FELRNLYTLDLSSNKFSRLRLASS 235
             L E     ++++ + +L LS ++L      + +  +  NL  LDLS N  + +   S 
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS- 267

Query: 236 KPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSIS 295
                       QL    +  N I     + +   G  N+ +LNL  +         S+ 
Sbjct: 268 -------FAWLPQLEYFFLEYNNIQHLFSHSLH--GLFNVRYLNLKRSFTKQSISLASLP 318

Query: 296 SI-----------RLLDLHSNQLRGNIPHMSTNTS---YVDYSNNHFTFIPADIGNFMSE 341
            I             L++  N + G   +M T      Y+  SN+  +        F+S 
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378

Query: 342 T----EYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNL 397
                       N +  +  ++     + +VLDL  N +   +           +  + L
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL-ENIFEIYL 437

Query: 398 GRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGV--VPKSLANCNMLQVLDLKNNHISDNF 455
             N     L+   F     LQ L L    L+ V   P        L +LDL NN+I++  
Sbjct: 438 SYNKYLQ-LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496

Query: 456 PCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPL------LQIVDLASNKFSGRLSQKW 509
              L     L++L LQ NN +                    L I++L SN F     +  
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE-- 554

Query: 510 LLTMEEMMVAETKSGSELKHLRYV-ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFS 568
                           +L  L+ + +  N    +          ++     ++  S++  
Sbjct: 555 -------------VFKDLFELKIIDLGLNNLNTL--------PASVFNNQVSL-KSLNLQ 592

Query: 569 SNNFEGPIPEEMGR-FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI--- 624
            N       +  G  F++L  L+M  N    +  S    +  I     ++  LS      
Sbjct: 593 KNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCN 652

Query: 625 -PAQLASLNFLSVLNLS 640
            P              S
Sbjct: 653 TPPHYHGFPVRLFDTSS 669

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  188 bits (480), Expect = 1e-51
 Identities = 97/520 (18%), Positives = 182/520 (35%), Gaps = 73/520 (14%)

Query: 141 VNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPE-ISNVSSSVLFDLDLSG 199
           V+  +   SH  L   +P  L    N+  L L++NQ         +  S   L  LD+  
Sbjct: 4   VSHEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQ--LTSLDVGF 58

Query: 200 NRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQI 259
           N +   +   +  +L  L  L+L  N+ S+L   +            + L+ L + +N I
Sbjct: 59  NTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKT--------FAFCTNLTELHLMSNSI 109

Query: 260 PGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEP--YSISSIRLLDLHSNQLRGNIPHMSTN 317
                N        NL  L+LSHN L S +      + +++ L L +N+++         
Sbjct: 110 QKIKNNPFV--KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-------- 159

Query: 318 TSYVDYSNNHFTFIPADIGNFMSET-EYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNL 376
                           ++  F + + +    ++N +    P           L L+N  L
Sbjct: 160 ------------LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207

Query: 377 SGTIP-ACLIAQSETTLGVLNLGRNNLNGTLSDTIFP-RNCGLQILDLGGNQLQGVVPKS 434
             ++     +  + T++  L+L  + L+ T + T    +   L +LDL  N L  V   S
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 435 LANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPL---- 490
            A    L+   L+ N+I   F   L    +++ L L+ +     IS              
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 491 ---LQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV-ISSNQFYEVGVT- 545
              L+ +++  N   G  S                  + L +L+Y+ +S++      +T 
Sbjct: 328 LKCLEHLNMEDNDIPGIKSN---------------MFTGLINLKYLSLSNSFTSLRTLTN 372

Query: 546 VTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIP-SSF 604
            T   +    L +      ++ + N       +       L  L++  N +   +    +
Sbjct: 373 ETFVSLAHSPLHI------LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426

Query: 605 GNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
             L+ I  + LS N          A +  L  L L    L
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  135 bits (343), Expect = 1e-33
 Identities = 68/338 (20%), Positives = 117/338 (34%), Gaps = 30/338 (8%)

Query: 315 STNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNN 374
           + +    D S+   T +P D+    +        +N L  +   +  +      LD+  N
Sbjct: 3   TVSHEVADCSHLKLTQVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 375 NLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKS 434
            +S   P     Q    L VLNL  N L+  LSD  F     L  L L  N +Q +    
Sbjct: 60  TISKLEPELC--QKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNP 116

Query: 435 LANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIV 494
                 L  LDL +N +S           +LQ L+L +N      S   +  +   L+ +
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 495 DLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV-ISSNQFYEVGVTVTVKGVET 553
           +L+SN+     S                    +  L  + +++ Q            +  
Sbjct: 177 ELSSNQIKE-FSPGCF--------------HAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221

Query: 554 MLLKVPNIFTSIDFSSNNFEGPIPEEMG--RFKSLYALNMSHNALTGSIPSSFGNLKQIE 611
             ++      ++  S++             ++ +L  L++S+N L      SF  L Q+E
Sbjct: 222 TSIR------NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 612 SLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 649
              L  NN+       L  L  +  LNL  +     I 
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  233 bits (596), Expect = 2e-68
 Identities = 108/532 (20%), Positives = 191/532 (35%), Gaps = 41/532 (7%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            LDLS C +Q         +  L TL L+ N +   +L  F   SSL+ L+   T  +  
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 61  LPDSIGNLENLTWVEVRRCNFTG-PIPPSMANLTQLFHMDFSSNHFSGHIPSL-----HK 114
               IG+L+ L  + V         +P   +NLT L H+D SSN       +        
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 115 SRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLS 173
                 LDLS N ++      F  + + L+ + L +N  + ++ ++    L  LE   L 
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 174 NNQFENQ-------LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNK 226
             +F N+          +  + +  + +  L+         I +   L N+ +  L S  
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

Query: 227 FSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLV 286
             R          +           L++ N +        +      +L  L  + N   
Sbjct: 294 IER----------VKDFSYNFGWQHLELVNCKFGQFPTLKL-----KSLKRLTFTSNKGG 338

Query: 287 SLQEPYSISSIRLLDLHSNQL--RGNIPHMSTNTS---YVDYSNNHFTFIPADIGNFMSE 341
           +      + S+  LDL  N L  +G        T+   Y+D S N    + ++       
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ- 397

Query: 342 TEYFFAANNSLVGVIPESVCKGIYF-QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRN 400
            E+    +++L  +   SV   +     LD+S+ +              ++L VL +  N
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGN 455

Query: 401 NLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLG 460
           +        IF     L  LDL   QL+ + P +  + + LQVL++ +N+          
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

Query: 461 NASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLT 512
             +SLQVL    N+          +     L  ++L  N F+     +  L 
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFP-SSLAFLNLTQNDFACTCEHQSFLQ 566

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  220 bits (562), Expect = 1e-63
 Identities = 114/655 (17%), Positives = 200/655 (30%), Gaps = 111/655 (16%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
           T    E     K P+ +    + + LDLS N L      +F     L+ L LS       
Sbjct: 11  TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLK 119
              +  +L +L+ + +           + + L+ L  +     + +      +   + LK
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 120 YLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFEN 179
            L+++ N +       ++  L NL  + LS N +       L +L  +  L LS +   N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 180 QLPEI--SNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKP 237
            +  I         L  L L  N     V  + I  L  L    L   +F      +   
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR-----NEGN 242

Query: 238 RVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSI 297
                      L  L I                    L +L+   + ++ L     ++++
Sbjct: 243 LEKFDKSALEGLCNLTIEEF----------------RLAYLDYYLDDIIDL--FNCLTNV 284

Query: 298 RLLDLHSNQLRGNIP-HMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVI 356
               L S  +        +    +++  N  F   P      +   +     +N      
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP---TLKLKSLKRLTFTSNKGGNAF 341

Query: 357 PESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCG 416
            E     +  + LDLS N LS            T+L  L+L  N +    S+ +      
Sbjct: 342 SEVDLPSL--EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ-- 397

Query: 417 LQILDLGGNQLQGVVPKS-LANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNF 475
           L+ LD   + L+ +   S   +   L  LD+ + H    F       SS           
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS----------- 446

Query: 476 SGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVIS 535
                          L+++ +A N F                       +EL++L +   
Sbjct: 447 ---------------LEVLKMAGNSFQENFLPDIF--------------TELRNLTF--- 474

Query: 536 SNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNA 595
                                        +D S    E   P       SL  LNMSHN 
Sbjct: 475 -----------------------------LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505

Query: 596 LTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL-NFLSVLNLSYNNLVGKIP 649
                   +  L  ++ LD S+N++      +L    + L+ LNL+ N+      
Sbjct: 506 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  135 bits (343), Expect = 7e-34
 Identities = 67/330 (20%), Positives = 112/330 (33%), Gaps = 23/330 (6%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
           +  L    ++             + L+L   +  Q     FP         L+ T   G 
Sbjct: 286 SFSLVSVTIERVKDFSYN--FGWQHLELVNCKFGQ-----FPTLKLKSLKRLTFTSNKGG 338

Query: 61  LPDSIGNLENLTWVEVR--RCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNL 118
              S  +L +L ++++     +F G    S    T L ++D S N       +      L
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 119 KYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFE 178
           ++LD   +NL      + +  L NL  + +SH     +       L +LE L ++ N F+
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 179 NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPR 238
                        L  LDLS  +LE  +  +    L +L  L++S N F  L        
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFP---- 513

Query: 239 VIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLV----SLQEPYSI 294
                K  + L  LD S N I       +    + +L FLNL+ N              I
Sbjct: 514 ----YKCLNSLQVLDYSLNHIMTSKKQELQHFPS-SLAFLNLTQNDFACTCEHQSFLQWI 568

Query: 295 SSIRLLDLHSNQLRGNIPHMSTNTSYVDYS 324
              R L +   ++    P        +  +
Sbjct: 569 KDQRQLLVEVERMECATPSDKQGMPVLSLN 598

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 5e-07
 Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 28/152 (18%)

Query: 1   TLDLSECGLQGKFPEKILQ-VPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSG 59
            L ++    Q  F   I   +  L  LDLS+ QL Q S   F   SSL+ L +S   F  
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508

Query: 60  TLPDSIGNLENLTWVEVRRCNFTGPIPPSMANL-TQLFHMDFSSNHFS------------ 106
                   L +L  ++    +        + +  + L  ++ + N F+            
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 568

Query: 107 --------------GHIPSLHKSRNLKYLDLS 124
                            PS  +   +  L+++
Sbjct: 569 KDQRQLLVEVERMECATPSDKQGMPVLSLNIT 600

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  212 bits (542), Expect = 1e-60
 Identities = 87/634 (13%), Positives = 187/634 (29%), Gaps = 121/634 (19%)

Query: 43  KNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGP----IPPSMANLTQLFHM 98
            N  +  L L G G SG +PD+IG L  L  + +             P  ++        
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 99  DFSSNHFSGHIPS---LHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNG 155
                H+              +L    ++ +     I  +     +    +    N++  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS-RITLKDTQIGQLSNNI-T 196

Query: 156 SIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELR 215
            + +++  L  L   ++ N+ F  +             + +    +      +     L+
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLK-WDNLK 249

Query: 216 NLYTLDLSSNKFSRLRLASSKPRVIPI-LKNQSQLSGLDISNNQI------PGEIPNWIW 268
           +L  +++ +               +P  LK   ++  ++++ N+         +      
Sbjct: 250 DLTDVEVYNCPNL---------TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 269 EVGNGNLNFLNLSHNLLVSLQEPYSI---SSIRLLDLHSNQLRGNIPHMSTNTS--YVDY 323
                 +  + + +N L +     S+     + +L+   NQL G +P   +      ++ 
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNL 360

Query: 324 SNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPAC 383
           + N  T IPA+   F             +              + L  ++N L   IP  
Sbjct: 361 AYNQITEIPANFCGFTE----------QV--------------ENLSFAHNKLK-YIPNI 395

Query: 384 LIAQSETTLGVLNLGRNNLNGTLSDTIFP------RNCGLQILDLGGNQLQGVVPKSLAN 437
             A+S + +  ++   N +         P      +   +  ++L  NQ+     +  + 
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455

Query: 438 CNMLQVLDLKNNHISD-------NFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPL 490
            + L  ++L  N +++       +      N   L  + L+ N  +  +S      + P 
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPY 514

Query: 491 LQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKG 550
           L  +DL+ N FS                           L+     NQ            
Sbjct: 515 LVGIDLSYNSFSK----------------FPTQPLNSSTLKGFGIRNQ------------ 546

Query: 551 VETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQI 610
                          D   N      PE +    SL  L +  N +   +         I
Sbjct: 547 --------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNI 589

Query: 611 ESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
             LD+  N       + +       +  L Y+  
Sbjct: 590 SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  209 bits (534), Expect = 2e-59
 Identities = 93/552 (16%), Positives = 174/552 (31%), Gaps = 84/552 (15%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPK----NSSLRNLILSGTG 56
            L L   G  G+ P+ I Q+  LE L L  +          PK    N S          
Sbjct: 85  GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMH 144

Query: 57  FSGTLPDSIGNLE--NLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHK 114
           +  T  D     +  +L    +        I  S     +   +   SN+ +    ++ +
Sbjct: 145 YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMR 204

Query: 115 SRNLKYLDLSFNNLSGGISSTFWE------------------QLVNLNLVLLSHNSLNGS 156
              L+   +  +          WE                   L +L  V + +      
Sbjct: 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264

Query: 157 IPRSLFLLPNLETLWLSNNQFE---------NQLPEISNVSSSVLFDLDLSGNRL-EGPV 206
           +P  L  LP ++ + ++ N+             L +        +  + +  N L   PV
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK--IQIIYIGYNNLKTFPV 322

Query: 207 PISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNW 266
             S + +++ L  L+   N+             +P   ++ +L+ L+++ NQI  EIP  
Sbjct: 323 ETS-LQKMKKLGMLECLYNQLEGK---------LPAFGSEIKLASLNLAYNQI-TEIPAN 371

Query: 267 IWEVGNGNLNFLNLSHNLLVSLQEPYSI---SSIRLLDLHSNQLRGNIPHMSTNTSYVDY 323
                   +  L+ +HN L  +   +     S +  +D   N++                
Sbjct: 372 FCG-FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG----------- 419

Query: 324 SNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPAC 383
              +F  +       ++       +NN +     E    G     ++L  N L+      
Sbjct: 420 --KNFDPLDPTPFKGIN-VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476

Query: 384 LIAQSE-----TTLGVLNLGRNNLNGTLSDTIFPRNC-GLQILDLGGNQLQGVVPKSLAN 437
           L  ++E       L  ++L  N L   LSD         L  +DL  N      P    N
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN 534

Query: 438 CNMLQVLDLKN------NHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLL 491
            + L+   ++N      N     +P  +    SL  L + SN+          N     +
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN-----I 589

Query: 492 QIVDLASNKFSG 503
            ++D+  N    
Sbjct: 590 SVLDIKDNPNIS 601

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  201 bits (514), Expect = 1e-56
 Identities = 76/478 (15%), Positives = 159/478 (33%), Gaps = 58/478 (12%)

Query: 2   LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTL 61
           +      +     + ++++  L    +  +  +  ++    +N +        T      
Sbjct: 188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----E 241

Query: 62  PDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSG---------HIPSL 112
                NL++LT VEV  C     +P  +  L ++  ++ + N              +   
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301

Query: 113 HKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWL 172
                ++ + + +NNL      T  +++  L ++   +N L G +P +      L +L L
Sbjct: 302 PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360

Query: 173 SNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRL 232
           + NQ           +   + +L  + N+L+    I     +  +  +D S N+   +  
Sbjct: 361 AYNQITEIPANFCGFTEQ-VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 233 ASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPY 292
            +  P + P       +S +++SNNQI               L+ +NL  N+L  + +  
Sbjct: 420 KNFDP-LDPTPFKGINVSSINLSNNQISKFPKELFS--TGSPLSSINLMGNMLTEIPKNS 476

Query: 293 ---------SISSIRLLDLHSNQLRGNIPHMS----TNTSYVDYSNNHFTFIPADIGNFM 339
                    +   +  +DL  N+L                 +D S N F+  P    N  
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN-S 535

Query: 340 SETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGR 399
           S  + F   N                    D   N      P  +      +L  L +G 
Sbjct: 536 STLKGFGIRNQ------------------RDAQGNRTLREWPEGI--TLCPSLTQLQIGS 575

Query: 400 NNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPC 457
           N++   +++ I P    + +LD+  N    +    +       +  L  +   D   C
Sbjct: 576 NDIR-KVNEKITPN---ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGC 629

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  176 bits (447), Expect = 2e-47
 Identities = 79/598 (13%), Positives = 160/598 (26%), Gaps = 106/598 (17%)

Query: 77  RRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTF 136
           +  +  G      AN      +D           SL+ +  +  L L     SG +    
Sbjct: 45  KNWSQQGFGTQPGANWNFNKELDMWGAQPGV---SLNSNGRVTGLSLEGFGASGRVPDAI 101

Query: 137 WEQLVNLNLVLLSHNSLNG----SIPRSLFLLPNLETLWLSNNQFE-NQLPEISNVSSSV 191
             QL  L ++ L  +          P+ +    + E        ++   +        S 
Sbjct: 102 G-QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

Query: 192 LFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSG 251
           L    ++ +  +  +             +   SN  + +       + +  L     L  
Sbjct: 161 LIKDCINSDPQQKSIK-KSSRITLKDTQIGQLSNNITFV------SKAVMRLTK---LRQ 210

Query: 252 LDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNI 311
             + N+    E     WE  N N  +        +      ++  +  +++++      +
Sbjct: 211 FYMGNSPFVAENICEAWE--NENSEYAQQYKTEDLKWD---NLKDLTDVEVYNCPNLTKL 265

Query: 312 PH---MSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQV 368
           P           ++ + N          +                         G   Q+
Sbjct: 266 PTFLKALPEMQLINVACNRGISGEQLKDD----------------WQALADAPVGEKIQI 309

Query: 369 LDLSNNNL-SGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQL 427
           + +  NNL +  +   L  Q    LG+L    N L G L    F     L  L+L  NQ+
Sbjct: 310 IYIGYNNLKTFPVETSL--QKMKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQI 365

Query: 428 QGVVPKSLANCNMLQVLDLKNNHISDNFPCWL--GNASSLQVLVLQSNNFSGHISC---- 481
             +          ++ L   +N +    P      + S +  +    N            
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 482 -PRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV-ISSNQF 539
                     +  ++L++N+ S    +                 S    L  + +  N  
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKE---------------LFSTGSPLSSINLMGNML 469

Query: 540 YEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGS 599
            E+                            N      E       L ++++  N LT  
Sbjct: 470 TEI--------------------------PKNSLKDENENFKNTYLLTSIDLRFNKLTKL 503

Query: 600 IPS-SFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVL------NLSYNNLVGKIPT 650
                   L  +  +DLS N+ S   P Q  + + L         +   N  + + P 
Sbjct: 504 SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  172 bits (438), Expect = 3e-46
 Identities = 58/412 (14%), Positives = 136/412 (33%), Gaps = 51/412 (12%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            +++  C    K P  +  +P ++ ++++ N+ + G                        
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD----------------DWQ 296

Query: 61  LPDSIGNLENLTWVEVRRCNFT-GPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLK 119
                   E +  + +   N    P+  S+  + +L  ++   N   G +P+      L 
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLA 356

Query: 120 YLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL--LPNLETLWLSNNQF 177
            L+L++N ++  I + F      +  +  +HN L   IP       +  +  +  S N+ 
Sbjct: 357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI 414

Query: 178 E----NQLPEISNVSSSV--LFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLR 231
                     +         +  ++LS N++       +      L +++L  N  + + 
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEIP 473

Query: 232 LASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSL-QE 290
             S K       KN   L+ +D+  N++  ++ +         L  ++LS+N       +
Sbjct: 474 KNSLKD-ENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ 531

Query: 291 PYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANN 350
           P + S+++   + + +                  N      P  I             +N
Sbjct: 532 PLNSSTLKGFGIRNQRD--------------AQGNRTLREWPEGITL-CPSLTQLQIGSN 576

Query: 351 SLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNL 402
            +   + E +   I   VLD+ +N       + +        G+  L  +  
Sbjct: 577 DIRK-VNEKITPNI--SVLDIKDNPNISIDLSYVC--PYIEAGMYMLFYDKT 623

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  206 bits (525), Expect = 2e-58
 Identities = 110/611 (18%), Positives = 212/611 (34%), Gaps = 76/611 (12%)

Query: 24  ETLDLSENQLLQ--GSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNF 81
           +T +     L +  G+LP     +S   L  S          +   L NLT++++ RC  
Sbjct: 15  KTYNCENLGLNEIPGTLP-----NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI 69

Query: 82  TGPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWEQL 140
                 +  +  +L  +  ++N        +L   + LK+L      +S           
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPL-HNQ 128

Query: 141 VNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPE-ISNVSSSVLFDLDLSG 199
             L  + L  N ++       F    L+ L   NN       E +S++  +    L+L+G
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 200 NRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQI 259
           N + G  P    F+     +L+    +   +     K   I        L      +   
Sbjct: 189 NDIAGIEPG--AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ------SLWLGTFEDMDD 240

Query: 260 PGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEP--YSISSIRLLDLHSNQLRGNIPHMSTN 317
               P     +   ++  +NL  +   ++     +  S ++ LDL +  L   +P     
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG 299

Query: 318 TS---YVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYF-QVLDLSN 373
            S    +  S N F  +     +      +     N+    +     + +   + LDLS+
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

Query: 374 NNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPK 433
           +++  +    L  ++ + L  LNL  N    +L    F     L++LDL   +L+    +
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

Query: 434 S-LANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSW-PLL 491
           S   N ++L+VL+L ++ +  +         +LQ L LQ N+F        N++     L
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478

Query: 492 QIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGV 551
           +I+ L+    S  + Q                 + LK + +                   
Sbjct: 479 EILVLSFCDLSS-IDQHAF--------------TSLKMMNH------------------- 504

Query: 552 ETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIE 611
                        +D S N       E +   K +Y LN++ N ++  +PS    L Q  
Sbjct: 505 -------------VDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQR 550

Query: 612 SLDLSMNNLSG 622
           +++L  N L  
Sbjct: 551 TINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  172 bits (437), Expect = 3e-46
 Identities = 92/518 (17%), Positives = 164/518 (31%), Gaps = 55/518 (10%)

Query: 146 VLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPE-ISNVSSSVLFDLDLSGNRLEG 204
               +  LN  IP +L    + E L  S N          S + +  L  LDL+  ++  
Sbjct: 17  YNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLIN--LTFLDLTRCQIYW 71

Query: 205 PVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIP 264
            +          L TL L++N    +   +        L     L  L      I     
Sbjct: 72  -IHEDTFQSQHRLDTLVLTANPLIFMAETA--------LSGPKALKHLFFIQTGISSIDF 122

Query: 265 NWIWEVGNGNLNFLNLSHNLLVSLQEP--YSISSIRLLDLHSNQLRGNIPHM-----STN 317
             +       L  L L  N + S++ P  +    +++LD  +N +               
Sbjct: 123 IPL--HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180

Query: 318 TSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGI-YFQVLDLSNNNL 376
              ++ + N    I     +        F    +L+ +        I    +    + + 
Sbjct: 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

Query: 377 SGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLA 436
               PA      E ++  +NL ++     +S   F    GLQ LDL    L  + P  L 
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLSEL-PSGLV 298

Query: 437 NCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDL 496
             + L+ L L  N   +       N  SL  L ++ N     +       +   L+ +DL
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG-TGCLENLENLRELDL 357

Query: 497 ASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV-ISSNQFYEVGVTVTVKGVETML 555
           + +           L               L HL+ + +S N+   +             
Sbjct: 358 SHDDIETSDCCNLQL-------------RNLSHLQSLNLSYNEPLSL--------KTEAF 396

Query: 556 LKVPNIFTSIDFSSNNFEGPIPEE-MGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLD 614
            + P +   +D +    +    +        L  LN+SH+ L  S    F  L  ++ L+
Sbjct: 397 KECPQL-ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455

Query: 615 LSMNNLSGKI---PAQLASLNFLSVLNLSYNNLVGKIP 649
           L  N+           L +L  L +L LS+ +L     
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  120 bits (302), Expect = 1e-28
 Identities = 51/367 (13%), Positives = 109/367 (29%), Gaps = 39/367 (10%)

Query: 298 RLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIP 357
           +  +  +  L      +  +T  +++S N    I     + +    +       +  +  
Sbjct: 15  KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74

Query: 358 ESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGL 417
           ++         L L+ N L       L       L  L   +  ++  +          L
Sbjct: 75  DTFQSQHRLDTLVLTANPLIFMAETAL--SGPKALKHLFFIQTGISS-IDFIPLHNQKTL 131

Query: 418 QILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQ-SNNFS 476
           + L LG N +  +          L+VLD +NN I       + +      L L  + N  
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 477 GHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRY-VIS 535
             I          + Q ++    +    +              +    S ++ L      
Sbjct: 192 AGI--EPGAFDSAVFQSLNFGGTQNLLVIF-------------KGLKNSTIQSLWLGTFE 236

Query: 536 SNQFYEVGVTVTVKGVETMLLKV-----------PNIF------TSIDFSSNNFEGPIPE 578
                ++   V     E  +  +            N F        +D ++ +    +P 
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPS 295

Query: 579 EMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ-LASLNFLSVL 637
            +    +L  L +S N        S  N   +  L +  N    ++    L +L  L  L
Sbjct: 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355

Query: 638 NLSYNNL 644
           +LS++++
Sbjct: 356 DLSHDDI 362

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  120 bits (302), Expect = 1e-28
 Identities = 66/291 (22%), Positives = 121/291 (41%), Gaps = 19/291 (6%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            LDL+   L  + P  ++ + TL+ L LS N+       +     SL +L + G      
Sbjct: 282 ELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 61  L-PDSIGNLENLTWVEVRRCNFT--GPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSR 116
           L    + NLENL  +++   +          + NL+ L  ++ S N        +  +  
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 117 NLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQ 176
            L+ LDL+F  L    + + ++ L  L ++ LSH+ L+ S  +    LP L+ L L  N 
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460

Query: 177 FENQLPEISNVSSSV--LFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLAS 234
           F     + +N   ++  L  L LS   L   +       L+ +  +DLS N+ +   + +
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

Query: 235 SKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLL 285
                   L +   +  L++++N I   +P+ +          +NL  N L
Sbjct: 520 --------LSHLKGIY-LNLASNHISIILPSLL--PILSQQRTINLRQNPL 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  197 bits (502), Expect = 4e-55
 Identities = 96/532 (18%), Positives = 179/532 (33%), Gaps = 43/532 (8%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            LDLS C ++    +    +  L  L L+ N +   S  +F   +SL NL+   T  +  
Sbjct: 60  WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119

Query: 61  LPDSIGNLENLTWVEVRRCNFTG-PIPPSMANLTQLFHMDFSSNHFSGHIPSL-----HK 114
               IG L  L  + V         +P   +NLT L H+D S N+      +        
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179

Query: 115 SRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLS 173
            +    LD+S N +       F  Q + L+ + L  N  + +I ++    L  L    L 
Sbjct: 180 PQVNLSLDMSLNPIDFIQDQAF--QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237

Query: 174 NNQFEN-------QLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNK 226
             +F++       +   +  +    + +  L+         +     L N+  + L+   
Sbjct: 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF-HCLANVSAMSLAGVS 296

Query: 227 FSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLV 286
                        +  +    +   L I   Q+          +    L  L L+ N   
Sbjct: 297 IKY----------LEDVPKHFKWQSLSIIRCQL-----KQFPTLDLPFLKSLTLTMNKGS 341

Query: 287 SLQEPYSISSIRLLDLHSNQLRGNIPHM-----STNTSYVDYSNNHFTFIPADIGNFMSE 341
              +  ++ S+  LDL  N L  +         + +  ++D S N    + A+    + E
Sbjct: 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG-LEE 400

Query: 342 TEYFFAANNSLVGVIPESVCKGIYF-QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRN 400
            ++    +++L  V   S    +     LD+S  N              T+L  L +  N
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF--LGLTSLNTLKMAGN 458

Query: 401 NLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLG 460
           +        +F     L  LDL   QL+ +        + LQ+L++ +N++         
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518

Query: 461 NASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLT 512
              SL  L    N         ++      L   +L +N  +     +  L 
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHFPKS--LAFFNLTNNSVACICEHQKFLQ 568

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  191 bits (486), Expect = 6e-53
 Identities = 110/650 (16%), Positives = 189/650 (29%), Gaps = 113/650 (17%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
           T    +  L  K P+ I    + + +DLS N L      +F   S L+ L LS       
Sbjct: 15  TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLK 119
              +   L +L+ + +         P S + LT L ++       +      + +   LK
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 120 YLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNL----ETLWLSNN 175
            L+++ N +       ++  L NL  V LS+N +       L  L        +L +S N
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

Query: 176 QFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASS 235
             +    +        L +L L GN     +  + +  L  L+   L   +F   R    
Sbjct: 192 PIDFIQDQAFQGIK--LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 236 KPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSIS 295
               I        +    ++      +           N++ ++L+   +  L++     
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF--HCLANVSAMSLAGVSIKYLEDVPKHF 307

Query: 296 SIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGV 355
             + L +   QL+            +  + N  +                  A  SL   
Sbjct: 308 KWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFK------------KVALPSL--- 352

Query: 356 IPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNC 415
                        LDLS N LS +           +L  L+L  N     +    F    
Sbjct: 353 -----------SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA--IIMSANFMGLE 399

Query: 416 GLQILDLGGNQLQGVVPKS-LANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNN 474
            LQ LD   + L+ V   S   +   L  LD+   +   +F       +S          
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS---------- 449

Query: 475 FSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVI 534
                           L  + +A N F                       +   +L +  
Sbjct: 450 ----------------LNTLKMAGNSFKDNTLSNVF--------------ANTTNLTF-- 477

Query: 535 SSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHN 594
                                         +D S    E            L  LNMSHN
Sbjct: 478 ------------------------------LDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507

Query: 595 ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
            L     S +  L  + +LD S N +             L+  NL+ N++
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  171 bits (435), Expect = 7e-46
 Identities = 102/638 (15%), Positives = 190/638 (29%), Gaps = 125/638 (19%)

Query: 25  TLDLSENQLLQGSLPNFPKN--SSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFT 82
           T    + +L +      P +  SS +N+ LS          S  N   L W+++ RC   
Sbjct: 15  TYQCMDQKLSK-----VPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE 69

Query: 83  GPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWEQLV 141
                +   L  L ++  + N      P S     +L+ L      L+   S     QL+
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI-GQLI 128

Query: 142 NLNLVLLSHNSLNG-SIPRSLFLLPNLETLWLSNNQFENQLPEISNV---SSSVLFDLDL 197
            L  + ++HN ++   +P     L NL  + LS N  +            +  V   LD+
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 198 SGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNN 257
           S N ++  +     F+   L+ L L  N  S   +  +  + +  L     + G      
Sbjct: 189 SLNPIDF-IQDQA-FQGIKLHELTLRGNFNS-SNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 258 QIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEP--YSISSIRLLDLHSNQLRGNIPHMS 315
            +    P+ +  + +  ++   L++    S      + ++++  + L             
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL------------- 292

Query: 316 TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNN 375
                   +     ++     +F                           +Q L +    
Sbjct: 293 --------AGVSIKYLEDVPKHFK--------------------------WQSLSIIRCQ 318

Query: 376 LSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSL 435
           L       L       L  L L  N  + +      P    L  LDL  N L      S 
Sbjct: 319 LKQFPTLDL-----PFLKSLTLTMNKGSISFKKVALPS---LSYLDLSRNALSFSGCCSY 370

Query: 436 ANCNM--LQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQI 493
           ++     L+ LDL  N               LQ L  Q +     ++     +S   L  
Sbjct: 371 SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKR-VTEFSAFLSLEKLLY 428

Query: 494 VDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVET 553
           +D++           +                 L  L                       
Sbjct: 429 LDISYTNTKIDFDGIF---------------LGLTSLNT--------------------- 452

Query: 554 MLLKVPNIFTSIDFSSNNFEGPIPEEM-GRFKSLYALNMSHNALTGSIPSSFGNLKQIES 612
                      +  + N+F+      +     +L  L++S   L       F  L +++ 
Sbjct: 453 -----------LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501

Query: 613 LDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT 650
           L++S NNL     +    L  LS L+ S+N +      
Sbjct: 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  196 bits (500), Expect = 1e-53
 Identities = 96/632 (15%), Positives = 191/632 (30%), Gaps = 137/632 (21%)

Query: 40  NFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMD 99
           +   N  +  L L+G G  G +PD+IG L  L  +     + T                +
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 100 FSSNHFSGHIPS--LHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLN--- 154
              +    H     L   + L   DL  + ++        ++   ++L      +L    
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 155 GSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFEL 214
             I +++  L  L+ ++ +N+ F      +         D +    +      +S    L
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVD------WEDANSDYAKQYENEELSW-SNL 490

Query: 215 RNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIW------ 268
           ++L  ++L +         +  P  +  L     L  L+I+ N+                
Sbjct: 491 KDLTDVELYNCPNM-----TQLPDFLYDLPE---LQSLNIACNRGISAAQLKADWTRLAD 542

Query: 269 EVGNG-NLNFLNLSHNLLVSLQEPYSIS---SIRLLDLHSNQLRGNIPHMSTNTS--YVD 322
           +   G  +    + +N L       S+     + LLD   N++R ++    TN     + 
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLK 601

Query: 323 YSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPA 382
              N    IP D   F             +              + L  S+N L   IP 
Sbjct: 602 LDYNQIEEIPEDFCAFTD----------QV--------------EGLGFSHNKLK-YIPN 636

Query: 383 CLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCG----LQILDLGGNQLQGVVPKSLANC 438
              A+S   +G ++   N +     +     +         + L  N++Q    +  A  
Sbjct: 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696

Query: 439 NMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLAS 498
           + +  + L NN ++                 +  N+        +N     LL  +DL  
Sbjct: 697 SPISTIILSNNLMTS----------------IPENSLKPKDGNYKN---TYLLTTIDLRF 737

Query: 499 NKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKV 558
           NK +               +++    + L +L                            
Sbjct: 738 NKLTS--------------LSDDFRATTLPYLSN-------------------------- 757

Query: 559 PNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSH------NALTGSIPSSFGNLKQIES 612
                 +D S N F    P +      L A  + H      N +    P+       +  
Sbjct: 758 ------MDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810

Query: 613 LDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
           L +  N++  K+  +L     L +L+++ N  
Sbjct: 811 LQIGSNDIR-KVDEKL--TPQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  193 bits (493), Expect = 1e-52
 Identities = 77/443 (17%), Positives = 147/443 (33%), Gaps = 47/443 (10%)

Query: 14  PEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTW 73
            + I ++  L+ +  + +                 +              S  NL++LT 
Sbjct: 441 SKAIQRLTKLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 74  VEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHI----------PSLHKSRNLKYLDL 123
           VE+  C     +P  + +L +L  ++ + N                        ++   +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 124 SFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPE 183
            +NNL    +S   +++V L L+   HN +      +      L  L L  NQ E  +PE
Sbjct: 556 GYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE-IPE 612

Query: 184 ISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPIL 243
                +  +  L  S N+L+    I     +  + ++D S NK        S        
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672

Query: 244 KNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPY---------SI 294
            N    S + +S N+I               ++ + LS+NL+ S+ E           + 
Sbjct: 673 IN---ASTVTLSYNEIQKFPTELFA--TGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 295 SSIRLLDLHSNQLRGNIPHMSTNT----SYVDYSNNHFTFIPADIGN-----FMSETEYF 345
             +  +DL  N+L          T    S +D S N F+  P    N             
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787

Query: 346 FAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGT 405
            A  N ++   P  +        L + +N++   +   L       L +L++  +N N +
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT----PQLYILDI-ADNPNIS 841

Query: 406 LSDTIFPRNCGLQILDLGGNQLQ 428
           +  T         +  L  ++ Q
Sbjct: 842 IDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  166 bits (423), Expect = 1e-43
 Identities = 90/615 (14%), Positives = 179/615 (29%), Gaps = 123/615 (20%)

Query: 57  FSGTLPDSIGNLENLTWVEVRRCNFTGPIPP-SMANLTQLFHMDFSSNHFSGHIP-SLHK 114
           +     ++  +  N  W   +  +  G  P   + N  ++  +  +     G +P ++ +
Sbjct: 288 YYSGTINNTIHSLN--WNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQ 345

Query: 115 SRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSN 174
              LK L    ++ +        E+L         H          L     L    L  
Sbjct: 346 LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405

Query: 175 NQFENQLPEISNVSSSVLFDL-----DLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSR 229
           +   N+ PE+  +       L         NR+   +  +I   L  L  +  +++ F+ 
Sbjct: 406 DAI-NRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAI-QRLTKLQIIYFANSPFTY 462

Query: 230 LRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSL- 288
                        +  +   S              N        +L  + L +   ++  
Sbjct: 463 D---------NIAVDWEDANSDYAKQYENEELSWSNLK------DLTDVELYNCPNMTQL 507

Query: 289 -QEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFA 347
               Y +  ++ L++  N+                     +T +  D             
Sbjct: 508 PDFLYDLPELQSLNIACNRGIS-----------AAQLKADWTRLADDEDTG--------- 547

Query: 348 ANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLS 407
               +              Q+  +  NNL    PA    Q    LG+L+   N +   L 
Sbjct: 548 --PKI--------------QIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR-HLE 589

Query: 408 DTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCW-LGNASSLQ 466
              F  N  L  L L  NQ++ +     A  + ++ L   +N +      +   +   + 
Sbjct: 590 A--FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG 647

Query: 467 VLVLQSNNFSG---HISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKS 523
            +    N       +ISC  ++        V L+ N+                    T+ 
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK---------------FPTEL 692

Query: 524 GSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRF 583
            +    +  +I SN                      N+ TSI     N   P        
Sbjct: 693 FATGSPISTIILSN----------------------NLMTSI---PENSLKPKDGNYKNT 727

Query: 584 KSLYALNMSHNALTGSIPSS--FGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSY 641
             L  +++  N LT S+        L  + ++D+S N  S   P Q  + + L    + +
Sbjct: 728 YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785

Query: 642 ------NNLVGKIPT 650
                 N ++ + PT
Sbjct: 786 QRDAEGNRILRQWPT 800

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  176 bits (448), Expect = 3e-50
 Identities = 72/308 (23%), Positives = 115/308 (37%), Gaps = 62/308 (20%)

Query: 349 NNSLVGVIPESVCKGIYFQVLDLSNNNLSGT--IPACLIAQSETTLGVLNL-GRNNLNGT 405
           N + +GV+ ++  +      LDLS  NL     IP+ L   +   L  L + G NNL G 
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL--ANLPYLNFLYIGGINNLVGP 92

Query: 406 LSDTIFPRNC-GLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASS 464
           +   I       L  L +    + G +P  L+    L  LD   N +S   P  + +  +
Sbjct: 93  IPPAIA--KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 465 LQVLVLQSNNFSGHISCPRN--NVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETK 522
           L  +    N  SG I  P +  + S  L   + ++ N+ +G++                 
Sbjct: 151 LVGITFDGNRISGAI--PDSYGSFS-KLFTSMTISRNRLTGKIP---------------- 191

Query: 523 SGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGR 582
                 +L                                  +D S N  EG      G 
Sbjct: 192 --PTFANLN------------------------------LAFVDLSRNMLEGDASVLFGS 219

Query: 583 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 642
            K+   ++++ N+L   +    G  K +  LDL  N + G +P  L  L FL  LN+S+N
Sbjct: 220 DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 643 NLVGKIPT 650
           NL G+IP 
Sbjct: 279 NLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  175 bits (446), Expect = 6e-50
 Identities = 71/262 (27%), Positives = 112/262 (42%), Gaps = 19/262 (7%)

Query: 1   TLDLSECGLQG--KFPEKILQVPTLETLDLSENQLLQGSLPN-FPKNSSLRNLILSGTGF 57
            LDLS   L      P  +  +P L  L +     L G +P    K + L  L ++ T  
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113

Query: 58  SGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPS--LHKS 115
           SG +PD +  ++ L  ++      +G +PPS+++L  L  + F  N  SG IP      S
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173

Query: 116 RNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNN 175
           +    + +S N L+G I  TF    +NL  V LS N L G          N + + L+ N
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFAN--LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 176 QFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASS 235
                L ++    +  L  LDL  NR+ G +P  +  +L+ L++L++S N          
Sbjct: 232 SLAFDLGKVGLSKN--LNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLC------- 281

Query: 236 KPRVIPILKNQSQLSGLDISNN 257
               IP   N  +      +NN
Sbjct: 282 --GEIPQGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  173 bits (442), Expect = 2e-49
 Identities = 80/292 (27%), Positives = 127/292 (43%), Gaps = 46/292 (15%)

Query: 43  KNSSLRNLILSGTGFSGT--LPDSIGNLENLTWVEVRRCN-FTGPIPPSMANLTQLFHMD 99
           +   + NL LSG        +P S+ NL  L ++ +   N   GPIPP++A LTQL ++ 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 100 FSSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIP 158
            +  + SG IP  L + + L  LD S+N LSG +  +    L NL  +    N ++G+IP
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIP 166

Query: 159 RSLFLLPNLET-LWLSNNQFENQLP-EISNVSSSVLFDLDLSGNRLEGPVPISIIFELRN 216
            S      L T + +S N+   ++P   +N++   L  +DLS N LEG   +      +N
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN---LAFVDLSRNMLEGDASVLF-GSDKN 222

Query: 217 LYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLN 276
              + L+ N  +           +  +     L+GLD+ NN+I G +P  +       L 
Sbjct: 223 TQKIHLAKNSLAF---------DLGKVGLSKNLNGLDLRNNRIYGTLPQGL-----TQLK 268

Query: 277 FLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMS--TNTSYVDYSNN 326
           FL+                    L++  N L G IP            Y+NN
Sbjct: 269 FLH-------------------SLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  154 bits (391), Expect = 3e-42
 Identities = 80/365 (21%), Positives = 129/365 (35%), Gaps = 87/365 (23%)

Query: 287 SLQEPYSISS-IRLLDLHSNQLRGNIPHMSTNTSYV---DYSNNHFT---FIPADIGNFM 339
            L  P ++SS +   D  +    G +    T T  V   D S  +      IP+ + N  
Sbjct: 17  DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP 76

Query: 340 SETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGR 399
                +    N+LVG IP ++ K      L +++ N+SG IP  L               
Sbjct: 77  YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--------------- 121

Query: 400 NNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWL 459
                 +          L  LD   N L G +P S+++   L  +    N IS   P   
Sbjct: 122 ----SQIKT--------LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 460 GNASSL-QVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMV 518
           G+ S L   + +  N  +G I     N++   L  VDL+ N   G  S            
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLN---LAFVDLSRNMLEGDASV----------- 215

Query: 519 AETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPE 578
                    K+ +                                 I  + N+    + +
Sbjct: 216 ----LFGSDKNTQK--------------------------------IHLAKNSLAFDLGK 239

Query: 579 EMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLN 638
            +G  K+L  L++ +N + G++P     LK + SL++S NNL G+IP Q  +L    V  
Sbjct: 240 -VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSA 297

Query: 639 LSYNN 643
            + N 
Sbjct: 298 YANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  129 bits (326), Expect = 2e-33
 Identities = 74/368 (20%), Positives = 127/368 (34%), Gaps = 86/368 (23%)

Query: 243 LKNQSQLS----GLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLV-SLQEPYSI--- 294
           L N + LS      D  N    G + +         +N L+LS   L      P S+   
Sbjct: 18  LGNPTTLSSWLPTTDCCNRTWLGVLCDTD--TQTYRVNNLDLSGLNLPKPYPIPSSLANL 75

Query: 295 SSIRLLDLHS-NQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLV 353
             +  L +   N L G IP                      I   +++  Y +  + ++ 
Sbjct: 76  PYLNFLYIGGINNLVGPIP--------------------PAIAK-LTQLHYLYITHTNVS 114

Query: 354 GVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPR 413
           G IP+ + +      LD S N LSGT+P  +   S   L  +    N ++G + D+    
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSI--SSLPNLVGITFDGNRISGAIPDSYGSF 172

Query: 414 NCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSN 473
           +     + +  N+L G +P + AN N L  +DL  N +  +     G+  + Q + L  N
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 474 NFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV 533
           + +  +     + +   L  +DL +N+  G L Q                 ++LK L   
Sbjct: 232 SLAFDLGKVGLSKN---LNGLDLRNNRIYGTLPQGL---------------TQLKFL--- 270

Query: 534 ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSH 593
                                         S++ S NN  G IP+  G  +       ++
Sbjct: 271 -----------------------------HSLNVSFNNLCGEIPQG-GNLQRFDVSAYAN 300

Query: 594 NALTGSIP 601
           N      P
Sbjct: 301 NKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 98.8 bits (247), Expect = 7e-23
 Identities = 46/224 (20%), Positives = 73/224 (32%), Gaps = 53/224 (23%)

Query: 432 PKSLANCNMLQ----VLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVS 487
            K L N   L       D  N                +  L L   N       P +  +
Sbjct: 15  KKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN 74

Query: 488 WPLLQIVDLAS-NKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTV 546
            P L  + +   N   G +                 + ++L  L Y              
Sbjct: 75  LPYLNFLYIGGINNLVGPIPP---------------AIAKLTQLHY-------------- 105

Query: 547 TVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGN 606
                             +  +  N  G IP+ + + K+L  L+ S+NAL+G++P S  +
Sbjct: 106 ------------------LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147

Query: 607 LKQIESLDLSMNNLSGKIPAQLASLNFLS-VLNLSYNNLVGKIP 649
           L  +  +    N +SG IP    S + L   + +S N L GKIP
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 90.3 bits (225), Expect = 6e-20
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 4/132 (3%)

Query: 2   LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPN-FPKNSSLRNLILSGTGFSGT 60
           + +S   L GK P     +  L  +DLS N L +G     F  + + + + L+    +  
Sbjct: 179 MTISRNRLTGKIPPTFANL-NLAFVDLSRNML-EGDASVLFGSDKNTQKIHLAKNSLAFD 236

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
           L   +G  +NL  +++R     G +P  +  L  L  ++ S N+  G IP     +    
Sbjct: 237 LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295

Query: 121 LDLSFNNLSGGI 132
              + N    G 
Sbjct: 296 SAYANNKCLCGS 307

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.3 bits (129), Expect = 9e-08
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 589 LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG--KIPAQLASLNFLSVLNLS-YNNLV 645
            +  +    G +  +     ++ +LDLS  NL     IP+ LA+L +L+ L +   NNLV
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 646 GKIPT 650
           G IP 
Sbjct: 91  GPIPP 95

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  174 bits (443), Expect = 3e-46
 Identities = 113/566 (19%), Positives = 204/566 (36%), Gaps = 57/566 (10%)

Query: 99  DFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIP 158
            +   + +  +P +      + L LSFN +   ++++ +  L  L L+ L       +I 
Sbjct: 10  FYRFCNLT-QVPQVL--NTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTID 65

Query: 159 RSLFL-LPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFE-LRN 216
           +  F  LPNL  L L +++    L   +      LF+L L    L   V     F  L+ 
Sbjct: 66  KEAFRNLPNLRILDLGSSKI-YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

Query: 217 LYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLN 276
           L  LDLS N+   L L  S           + L  +D S+NQI     + +  +    L+
Sbjct: 125 LTRLDLSKNQIRSLYLHPS-------FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177

Query: 277 FLNLSHNLLVSLQEP---YSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPA 333
           F +L+ N L S         ++  R + L    + GN              +N  +   A
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN----GWTVDITGNFSNAISKSQA 233

Query: 334 DIGNFMSETEYFFAANNSLVGVIPESVCKG---IYFQVLDLSNNNLSGTIPACLIAQSET 390
                           +++     ++   G      + LDLS+  +  ++ + +  ++  
Sbjct: 234 FSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVF-ETLK 290

Query: 391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNH 450
            L VLNL  N +N  ++D  F     LQ+L+L  N L  +   +      +  +DL+ NH
Sbjct: 291 DLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349

Query: 451 ISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWL 510
           I+            LQ L L+ N  +            P +  + L+ NK          
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNALT-------TIHFIPSIPDIFLSGNKLVTLPKINLT 402

Query: 511 LTMEEMM------VAETKSGSELKHLRYV-ISSNQFYEVGVTVTVKGVETMLLKVPNIFT 563
             +  +       +        + HL+ + ++ N+F       T     ++         
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL--------E 454

Query: 564 SIDFSSNNFEGPIPEEMGR-----FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMN 618
            +    N  +     E+          L  L ++HN L    P  F +L  +  L L+ N
Sbjct: 455 QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514

Query: 619 NLSGKIPAQLASLNFLSVLNLSYNNL 644
            L+      L +   L +L++S N L
Sbjct: 515 RLTVLSHNDLPAN--LEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  165 bits (420), Expect = 3e-43
 Identities = 105/546 (19%), Positives = 201/546 (36%), Gaps = 59/546 (10%)

Query: 1   TLDLSECGLQGKFPEKILQ-VPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSG 59
            L+L          ++  + +P L  LDL  +++       F     L  L L   G S 
Sbjct: 52  LLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD 111

Query: 60  TL--PDSIGNLENLTWVEVRRCNFTG-PIPPSMANLTQLFHMDFSSNHFS----GHIPSL 112
            +       NL+ LT +++ +       + PS   L  L  +DFSSN         +  L
Sbjct: 112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171

Query: 113 HKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLS-----------------HNSLNG 155
              + L +  L+ N+L   +S  + + +     ++L                   N+++ 
Sbjct: 172 Q-GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230

Query: 156 SIPRSLFLLPNLETLWLSNNQFENQLPEI-SNVSSSVLFDLDLSGNRLEGPVPISIIFEL 214
           S   SL L  ++       +  ++      + ++ S +  LDLS   +   +   +   L
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETL 289

Query: 215 RNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGN 274
           ++L  L+L+ NK +++                  L  L++S N + GE+ +  +  G   
Sbjct: 290 KDLKVLNLAYNKINKIA--------DEAFYGLDNLQVLNLSYNLL-GELYSSNFY-GLPK 339

Query: 275 LNFLNLSHNLLVSLQE--PYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIP 332
           + +++L  N +  +Q+     +  ++ LDL  N L     H   +   +  S N    +P
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL--TTIHFIPSIPDIFLSGNKLVTLP 397

Query: 333 ADIGNFMSETEYFFAANNSLVGVIPESVCKGIYF-QVLDLSNNNLSGTIPACLIAQSETT 391
               N  +   +   + N L  +        +   Q+L L+ N  S +           +
Sbjct: 398 K--INLTANLIHL--SENRLENLDILYFLLRVPHLQILILNQNRFS-SCSGDQTPSENPS 452

Query: 392 LGVLNLGRNNLNG----TLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLK 447
           L  L LG N L       L   +F     LQ+L L  N L  + P   ++   L+ L L 
Sbjct: 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512

Query: 448 NNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQ 507
           +N ++      L   ++L++L +  N          N   +  L ++D+  NKF      
Sbjct: 513 SNRLTVLSHNDL--PANLEILDISRNQLLAP-----NPDVFVSLSVLDITHNKFICECEL 565

Query: 508 KWLLTM 513
              +  
Sbjct: 566 STFINW 571

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  158 bits (400), Expect = 1e-40
 Identities = 113/552 (20%), Positives = 197/552 (35%), Gaps = 59/552 (10%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPN-FPKNSSLRNLILSGTGFSG 59
            L LS   ++         +  L+ L+L             F    +LR L L  +    
Sbjct: 28  RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF 87

Query: 60  TLPDSIGNLENLTWVEVRRCNFTGPIPPSMA--NLTQLFHMDFSSNHFS--GHIPSLHKS 115
             PD+   L +L  + +  C  +  +       NL  L  +D S N        PS  K 
Sbjct: 88  LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL 147

Query: 116 RNLKYLDLSFNNLSGGISSTFWE-QLVNLNLVLLSHNSLNGSIPRSLFLLPN------LE 168
            +LK +D S N +           Q   L+   L+ NSL   +        N      LE
Sbjct: 148 NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207

Query: 169 TLWLSNNQFE-----------NQLPEISNVSSSVLFDLDLSGNRLEGPVPISI-IFELRN 216
            L +S N +            ++    S + +  +       + ++ P   +       +
Sbjct: 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267

Query: 217 LYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLN 276
           +  LDLS      L           + +    L  L+++ N+I  +I +  +  G  NL 
Sbjct: 268 VRHLDLSHGFVFSLN--------SRVFETLKDLKVLNLAYNKI-NKIADEAFY-GLDNLQ 317

Query: 277 FLNLSHNLLVSLQEP--YSISSIRLLDLHSNQLR---GNIPHMSTNTSYVDYSNNHFTFI 331
            LNLS+NLL  L     Y +  +  +DL  N +                +D  +N  T I
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377

Query: 332 PADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETT 391
                 F+      F + N LV +   ++       ++ LS N L   +           
Sbjct: 378 H-----FIPSIPDIFLSGNKLVTLPKINLTA----NLIHLSENRLEN-LDILYFLLRVPH 427

Query: 392 LGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSL-----ANCNMLQVLDL 446
           L +L L +N  +    D     N  L+ L LG N LQ      L        + LQVL L
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487

Query: 447 KNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLS 506
            +N+++   P    + ++L+ L L SN     ++   +N     L+I+D++ N+     +
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNR----LTVLSHNDLPANLEILDISRNQLL-APN 542

Query: 507 QKWLLTMEEMMV 518
               +++  + +
Sbjct: 543 PDVFVSLSVLDI 554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  109 bits (273), Expect = 8e-25
 Identities = 73/338 (21%), Positives = 115/338 (34%), Gaps = 22/338 (6%)

Query: 315 STNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNN 374
           S +     Y   + T +P  +    + TE    + N +  V   S       Q+L+L + 
Sbjct: 3   SFDGRIAFYRFCNLTQVPQVL----NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ 58

Query: 375 NLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVV--P 432
               TI      ++   L +L+LG + +   L    F     L  L L    L   V   
Sbjct: 59  YTPLTIDKEAF-RNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 433 KSLANCNMLQVLDLKNNHISD-NFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLL 491
               N   L  LDL  N I         G  +SL+ +   SN            +    L
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176

Query: 492 QIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTV---TV 548
               LA+N    R+S  W   M             L+ L   +S N +           +
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCM------NPFRNMVLEILD--VSGNGWTVDITGNFSNAI 228

Query: 549 KGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFK--SLYALNMSHNALTGSIPSSFGN 606
              +   L + +      F  +N + P           S+  L++SH  +       F  
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET 288

Query: 607 LKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
           LK ++ L+L+ N ++         L+ L VLNLSYN L
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 44/245 (17%), Positives = 77/245 (31%), Gaps = 35/245 (14%)

Query: 414 NCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSN 473
           +   +I       L   VP+ L      + L L  N+I             LQ+L L S 
Sbjct: 3   SFDGRIAFYRFCNLT-QVPQVLNT---TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ 58

Query: 474 NFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV 533
                I       + P L+I+DL S+K    L       +             L  LR  
Sbjct: 59  YTPLTID-KEAFRNLPNLRILDLGSSKIY-FLHPDAFQGL-----------FHLFELR-- 103

Query: 534 ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEG-PIPEEMGRFKSLYALNMS 592
           +      +  +       +     +  + T +D S N      +    G+  SL +++ S
Sbjct: 104 LYFCGLSDAVLK------DGYFRNLKAL-TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 593 HNALTGSIPSSFGNLKQ--IESLDLSMNNLSGKIPAQLASLN------FLSVLNLSYNNL 644
            N +          L+   +    L+ N+L  ++               L +L++S N  
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216

Query: 645 VGKIP 649
              I 
Sbjct: 217 TVDIT 221

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  170 bits (432), Expect = 9e-46
 Identities = 109/503 (21%), Positives = 189/503 (37%), Gaps = 42/503 (8%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            LDLS C +Q         +  L TL L+ N +   +L  F   SSL+ L+   T  +  
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 61  LPDSIGNLENLTWVEVRRCNFT-GPIPPSMANLTQLFHMDFSSNHFS----GHIPSLHKS 115
               IG+L+ L  + V         +P   +NLT L H+D SSN         +  LH+ 
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 116 RNLKY-LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLS 173
             L   LDLS N ++      F  + + L+ + L +N  + ++ ++    L  LE   L 
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 174 NNQFE--NQLPEIS-----NVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNK 226
             +F     L +        + +  + +  L+         I +   L N+ +  L S  
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

Query: 227 FSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLV 286
             R          +           L++ N +           +   +L  L  + N   
Sbjct: 294 IER----------VKDFSYNFGWQHLELVNCKF-----GQFPTLKLKSLKRLTFTSNKGG 338

Query: 287 SLQEPYSISSIRLLDLHSNQLRG-NIPHMS----TNTSYVDYSNNHFTFIPADIGNFMSE 341
           +      + S+  LDL  N L        S    T+  Y+D S N    + ++       
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ- 397

Query: 342 TEYFFAANNSLVGVIPESVCKGIYF-QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRN 400
            E+    +++L  +   SV   +     LD+S+ +        +     ++L VL +  N
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIF-NGLSSLEVLKMAGN 455

Query: 401 NLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLG 460
           +        IF     L  LDL   QL+ + P +  + + LQVL++ +N +         
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515

Query: 461 NASSLQVLVLQSNNFSGHISCPR 483
             +SLQ + L +N +    SCPR
Sbjct: 516 RLTSLQKIWLHTNPWDC--SCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  143 bits (362), Expect = 2e-36
 Identities = 88/514 (17%), Positives = 166/514 (32%), Gaps = 53/514 (10%)

Query: 25  TLDLSENQLLQGSLPNFPKN--SSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFT 82
           T    E    +      P N   S +NL LS          S  +   L  +++ RC   
Sbjct: 11  TYQCMELNFYK-----IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 83  GPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWEQLV 141
                +  +L+ L  +  + N        +     +L+ L     NL+  + +     L 
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLK 124

Query: 142 NLNLVLLSHNSLN-GSIPRSLFLLPNLETLWLSNNQFE---------------------- 178
            L  + ++HN +    +P     L NLE L LS+N+ +                      
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 179 --NQLPEISNV--SSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLAS 234
             N +  I         L  L L  N     V  + I  L  L    L   +F       
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 235 SKPRVIPILKNQSQLSGLDISNNQIPGEIPNWI-WEVGNGNLNFLNLSHNLLVSLQEPYS 293
                   L+    L+  +     +   + + I       N++  +L    +  +++   
Sbjct: 245 KFD--KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302

Query: 294 ISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSL- 352
               + L+L + +          +   + +++N      +++   +   E+   + N L 
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD--LPSLEFLDLSRNGLS 360

Query: 353 -VGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIF 411
             G   +S       + LDLS N +  T+ +         L  L+   +NL      ++F
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF--LGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 412 PRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNF-PCWLGNASSLQVLVL 470
                L  LD+     +          + L+VL +  N   +NF P       +L  L L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 471 QSNNFSGHISCPRNNVSWPL--LQIVDLASNKFS 502
                   +          L  LQ++++ASN+  
Sbjct: 478 SQC----QLEQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  140 bits (354), Expect = 2e-35
 Identities = 92/561 (16%), Positives = 181/561 (32%), Gaps = 67/561 (11%)

Query: 93  TQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHN 151
               ++D S N        S      L+ LDLS   +       + + L +L+ ++L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGN 86

Query: 152 SLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISII 211
            +      +   L +L+ L        + L          L +L+++ N ++        
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 212 FELRNLYTLDLSSNKFSRLRLASSKPRVIPILKN-QSQLSGLDISNNQIPGEIPNWIWEV 270
             L NL  LDLSSNK   +         + +L         LD+S N +    P    E+
Sbjct: 146 SNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 271 GNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTF 330
               L+ L L +N          I  +  L++H   L                +  +   
Sbjct: 201 ---RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF------------RNEGNLEK 245

Query: 331 IPADIGN---FMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQ 387
                      ++  E+  A  +  +  I +            L +  +   +       
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF 304

Query: 388 SETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLK 447
               L ++N            T+  ++  L+ L    N+       S  +   L+ LDL 
Sbjct: 305 GWQHLELVNCKFGQF-----PTLKLKS--LKRLTFTSNKGGNAF--SEVDLPSLEFLDLS 355

Query: 448 NNHIS--DNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRL 505
            N +S            +SL+ L L  N      +   N +    L+ +D   +      
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---TMSSNFLGLEQLEHLDFQHSNLKQ-- 410

Query: 506 SQKWLLTMEEMMVAETKSGSELKHLRYV-ISSNQFYEVGVTVTVKGVETMLLKVPNIFTS 564
                       ++E      L++L Y+ IS          +           + ++   
Sbjct: 411 ------------MSEFSVFLSLRNLIYLDISHTHTRVAFNGI--------FNGLSSL-EV 449

Query: 565 IDFSSNNFEGPIPEEM-GRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK 623
           +  + N+F+     ++    ++L  L++S   L    P++F +L  ++ L+++ N L   
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

Query: 624 IPAQLASLNFLSVLNLSYNNL 644
                  L  L  + L  N  
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  138 bits (349), Expect = 9e-35
 Identities = 103/607 (16%), Positives = 188/607 (30%), Gaps = 86/607 (14%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
           T    E     K P+ +    + + LDLS N L      +F     L+ L LS       
Sbjct: 11  TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLK 119
              +  +L +L+ + +           + + L+ L  +     + +      +   + LK
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 120 YLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFEN 179
            L+++ N +       ++  L NL  + LS N +       L +L  +  L LS +   N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 180 QLPEISNV--SSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKP 237
            +  I         L  L L  N     V  + I  L  L    L   +F          
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 238 RVIPILKNQSQLSGLDISNNQIPGEIPNWI-WEVGNGNLNFLNLSHNLLVSLQEPYSISS 296
                L+    L+  +     +   + + I       N++  +L    +  +++      
Sbjct: 248 --KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305

Query: 297 IRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVI 356
            + L+L + +          +   + +++N      +                 SL    
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS------------EVDLPSL---- 349

Query: 357 PESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCG 416
                     + LDLS N LS            T+L  L+L  N +      + F     
Sbjct: 350 ----------EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQ 397

Query: 417 LQILDLGGNQLQGVVPKS-LANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNF 475
           L+ LD   + L+ +   S   +   L  LD+ + H    F       SSL+VL +  N+F
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 476 SGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVIS 535
             +   P        L  +DL+  +   +LS     ++           S L+ L     
Sbjct: 458 QENFL-PDIFTELRNLTFLDLSQCQLE-QLSPTAFNSL-----------SSLQVL----- 499

Query: 536 SNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNA 595
                                         + +SN  +        R  SL  + +  N 
Sbjct: 500 ------------------------------NMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529

Query: 596 LTGSIPS 602
              S P 
Sbjct: 530 WDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  126 bits (319), Expect = 7e-31
 Identities = 96/521 (18%), Positives = 161/521 (30%), Gaps = 87/521 (16%)

Query: 146 VLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGP 205
                 +    IP +L    + + L LS N   + L   S  S   L  LDLS   ++  
Sbjct: 12  YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQT- 66

Query: 206 VPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPN 265
           +       L +L TL L+ N    L L              S L  L      +      
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALG--------AFSGLSSLQKLVAVETNLASLENF 118

Query: 266 WIWEVGNGNLNFLNLSHNLLVSLQEPYSIS---SIRLLDLHSNQLRG-------NIPHMS 315
            I       L  LN++HNL+ S + P   S   ++  LDL SN+++         +  M 
Sbjct: 119 PIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 316 TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDL---- 371
                +D S N   FI       +   +     N   + V+   +      +V  L    
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 372 --SNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQG 429
             +  NL     + L      T+    L   +        +F     +    L    ++ 
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 430 VVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWP 489
           V     +     Q L+L N          L +   L+ L   SN          + V  P
Sbjct: 297 VKD--FSYNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSN----KGGNAFSEVDLP 347

Query: 490 LLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVK 549
            L+ +DL+ N           L+ +          + LK+L   +S N            
Sbjct: 348 SLEFLDLSRNG----------LSFKGCCSQSDFGTTSLKYLD--LSFNG----------- 384

Query: 550 GVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSS-FGNLK 608
                ++ + + F                     + L  L+  H+ L      S F +L+
Sbjct: 385 -----VITMSSNFLG------------------LEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 609 QIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 649
            +  LD+S  +           L+ L VL ++ N+      
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  109 bits (275), Expect = 2e-25
 Identities = 77/456 (16%), Positives = 148/456 (32%), Gaps = 65/456 (14%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPN-FPKNSSLRNLILSGTGFSG 59
            L   E  L       I  + TL+ L+++ N +    LP  F   ++L +L LS      
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 60  TLPDSIGNLENLTWVEVR---RCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLH--- 113
                +  L  +  + +      N    I P      +L  +   +N  S ++       
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223

Query: 114 -------------------------------KSRNLKYLDLSFNNLSGGISSTFWEQLVN 142
                                           +  ++   L++ +         +  L N
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 143 LNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRL 202
           ++   L   ++   +    +     + L L N +F  Q P +   S   L  L  + N+ 
Sbjct: 284 VSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKF-GQFPTLKLKS---LKRLTFTSNKG 337

Query: 203 EGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGE 262
                     +L +L  LDLS N  S     S            + L  LD+S N +   
Sbjct: 338 GN---AFSEVDLPSLEFLDLSRNGLSFKGCCSQ------SDFGTTSLKYLDLSFNGV-IT 387

Query: 263 IPNWIWEVGNGNLNFLNLSHNLLVSLQEPY---SISSIRLLDLHSNQLRGNIPHMSTNTS 319
           + +    +G   L  L+  H+ L  + E     S+ ++  LD+     R     +    S
Sbjct: 388 MSSNF--LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 320 ---YVDYSNNHFT-FIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNN 375
               +  + N F      DI   +    +   +   L  + P +       QVL++++N 
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505

Query: 376 LSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIF 411
           L  ++P  +     T+L  + L  N  + +     +
Sbjct: 506 LK-SVPDGIF-DRLTSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.1 bits (190), Expect = 5e-15
 Identities = 57/285 (20%), Positives = 98/285 (34%), Gaps = 36/285 (12%)

Query: 368 VLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQL 427
                  N    IP  L      +   L+L  N L   L    F     LQ+LDL   ++
Sbjct: 11  TYQCMELNFY-KIPDNL----PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI 64

Query: 428 QGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVS 487
           Q +   +  + + L  L L  N I           SSLQ LV    N +   + P  ++ 
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 488 WPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV-ISSNQFYEVGVTV 546
              L+ +++A N                      +  S L +L ++ +SSN+   +    
Sbjct: 125 T--LKELNVAHNLIQ--------------SFKLPEYFSNLTNLEHLDLSSNKIQSIY--- 165

Query: 547 TVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPS-SFG 605
                  +L ++P +  S+D S N     I     +   L+ L + +N  + ++      
Sbjct: 166 --CTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

Query: 606 NLKQIESLDL------SMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
            L  +E   L      +  NL     + L  L  L++       L
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 16/186 (8%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPN---FPKNSSLRNLILSGTGF 57
            LDLS  G+        L +  LE LD   + L    +     F    +L  L +S T  
Sbjct: 377 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL--KQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 58  SGTLPDSIGNLENLTWVEVRRCNFTGPIPPSM-ANLTQLFHMDFSSNHFSGHIP--SLHK 114
                     L +L  +++   +F     P +   L  L  +D S       +   + + 
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNS 492

Query: 115 SRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSN 174
             +L+ L+++ N L   +    +++L +L  + L  N  + S PR  +L     + WL+ 
Sbjct: 493 LSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL-----SRWLNK 546

Query: 175 NQFENQ 180
           N  + Q
Sbjct: 547 NSQKEQ 552

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  143 bits (364), Expect = 2e-37
 Identities = 94/492 (19%), Positives = 174/492 (35%), Gaps = 90/492 (18%)

Query: 12  KFPEKILQVPTLETLDLSENQLLQGSLPNFPKNS-------------SLRNLILSGTGFS 58
           + P +   V +      + ++  + + P   +                   L L+  G S
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 59  GTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNL 118
            +LP+   +LE+L       CN    +P    +L  L   + +    S   P       L
Sbjct: 85  -SLPELPPHLESLVA----SCNSLTELPELPQSLKSLLVDNNNLKALSDLPP------LL 133

Query: 119 KYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFE 178
           +YL +S N L         +    L ++ + +NSL   +P      P+LE +   NNQ E
Sbjct: 134 EYLGVSNNQLE---KLPELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLE 186

Query: 179 NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPR 238
             LPE+ N+    L  +    N L+      +     +L ++   +N    L        
Sbjct: 187 E-LPELQNLPF--LTAIYADNNSLK-----KLPDLPLSLESIVAGNNILEEL-------- 230

Query: 239 VIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIR 298
             P L+N   L+ +   NN +   +P+        +L  LN+  N L  L  P    S+ 
Sbjct: 231 --PELQNLPFLTTIYADNNLL-KTLPDLP-----PSLEALNVRDNYLTDL--PELPQSLT 280

Query: 299 LLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPE 358
            LD+  N     +  +  N  Y++ S+N    +     +     E    +NN L+  +P 
Sbjct: 281 FLDVSENIFS-GLSELPPNLYYLNASSNEIRSLCDLPPSL----EELNVSNNKLI-ELPA 334

Query: 359 SVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLN------GTLSD---- 408
              +    + L  S N+L+  +P          L  L++  N L        ++ D    
Sbjct: 335 LPPR---LERLIASFNHLA-EVPELP-----QNLKQLHVEYNPLREFPDIPESVEDLRMN 385

Query: 409 ---TIFPRNCG-LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASS 464
                 P     L+ L +  N L+   P    +   ++ L + +  + D +         
Sbjct: 386 SHLAEVPELPQNLKQLHVETNPLR-EFPDIPES---VEDLRMNSERVVDPYEFAHETTDK 441

Query: 465 LQVLVLQSNNFS 476
           L+  V + ++  
Sbjct: 442 LEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (303), Expect = 3e-29
 Identities = 89/609 (14%), Positives = 188/609 (30%), Gaps = 160/609 (26%)

Query: 14  PEKILQVPTLETLDLSENQLLQGSLP-NFPKNSSLRNLILSGTGFSGTLPDSIGNLENLT 72
             + +    L+      + L    +P       S      + + +    P   G    + 
Sbjct: 4   NPRNVSNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 73  WVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGI 132
              +R C              Q   ++ ++   S  +P L    +L+ L  S N+L+  +
Sbjct: 62  VSRLRDCL-----------DRQAHELELNNLGLS-SLPELPP--HLESLVASCNSLTE-L 106

Query: 133 SSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVL 192
                + L +L +   +  +L+        L P LE L +SNNQ E  LPE+ N S   L
Sbjct: 107 PELP-QSLKSLLVDNNNLKALSD-------LPPLLEYLGVSNNQLEK-LPELQNSSF--L 155

Query: 193 FDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGL 252
             +D+  N L+      +     +L  +   +N+   L          P L+N   L+ +
Sbjct: 156 KIIDVDNNSLK-----KLPDLPPSLEFIAAGNNQLEEL----------PELQNLPFLTAI 200

Query: 253 DISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIP 312
              NN +  ++P+        +L  +   +N+L  L E  ++  +  +   +N L+  +P
Sbjct: 201 YADNNSLK-KLPDLP-----LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLP 253

Query: 313 HMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLS 372
            +  +   ++  +N+ T +P    +                               LD+S
Sbjct: 254 DLPPSLEALNVRDNYLTDLPELPQSL----------------------------TFLDVS 285

Query: 373 NNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVP 432
            N  S  +           L  LN   N +      ++      L+ L++  N+L   +P
Sbjct: 286 ENIFS-GLSELP-----PNLYYLNASSNEIR-----SLCDLPPSLEELNVSNNKLI-ELP 333

Query: 433 KSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQ 492
                   L+ L    NH+++  P    N                             L+
Sbjct: 334 ALPPR---LERLIASFNHLAE-VPELPQN-----------------------------LK 360

Query: 493 IVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVE 552
            + +  N                      +     + +  +  ++               
Sbjct: 361 QLHVEYNPL-------------------REFPDIPESVEDLRMNSHL------------- 388

Query: 553 TMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIES 612
             + ++P     +   +N      P+      S+  L M+   +      +     ++E 
Sbjct: 389 AEVPELPQNLKQLHVETNPLRE-FPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLED 444

Query: 613 LDLSMNNLS 621
                ++  
Sbjct: 445 DVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (251), Expect = 1e-22
 Identities = 83/521 (15%), Positives = 170/521 (32%), Gaps = 113/521 (21%)

Query: 139 QLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLP------------EISN 186
               L   L   ++L   +P     + +    + + +++E   P             + +
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 187 VSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQ 246
                  +L+L+   L      S+     +L +L  S N  + L      P +   LK+ 
Sbjct: 68  CLDRQAHELELNNLGLS-----SLPELPPHLESLVASCNSLTEL------PELPQSLKS- 115

Query: 247 SQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQ 306
             L   + +   +    P          L +L +S+N L  L E  + S ++++D+ +N 
Sbjct: 116 --LLVDNNNLKALSDLPPL---------LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS 164

Query: 307 LRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYF 366
           L+  +P +  +  ++   NN    +P ++ N +      +A NNSL   +P+        
Sbjct: 165 LK-KLPDLPPSLEFIAAGNNQLEELP-ELQN-LPFLTAIYADNNSLK-KLPDLPLS---L 217

Query: 367 QVLDLSNNNLSG--TIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGG 424
           + +   NN L     +           L  +    N L      T+      L+ L++  
Sbjct: 218 ESIVAGNNILEELPELQNL------PFLTTIYADNNLLK-----TLPDLPPSLEALNVRD 266

Query: 425 NQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRN 484
           N L  + P+   +   L V +   + +S+  P       +L  L   SN        P +
Sbjct: 267 NYLTDL-PELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIRSLCDLPPS 318

Query: 485 NVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRY-VISSNQFYEVG 543
                 L+ +++++NK                     +  +    L   + S N      
Sbjct: 319 ------LEELNVSNNKL-------------------IELPALPPRLERLIASFNHL---- 349

Query: 544 VTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSS 603
                      + ++P     +    N      P+     + L   +         +P  
Sbjct: 350 ---------AEVPELPQNLKQLHVEYNPLRE-FPDIPESVEDLRMNSHL-----AEVPEL 394

Query: 604 FGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
             NLK    L +  N L  + P    S+  L + +    + 
Sbjct: 395 PQNLK---QLHVETNPLR-EFPDIPESVEDLRMNSERVVDP 431

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 96.2 bits (240), Expect = 3e-21
 Identities = 85/490 (17%), Positives = 156/490 (31%), Gaps = 86/490 (17%)

Query: 157 IPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRN 216
           I         L+     ++       E  NV S    +   + +  E   P     E R 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKS--KTEYYNAWSEWERNAPPG-NGEQRE 59

Query: 217 LYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLN 276
           +    L      +                      L+++N  +   +P         +L 
Sbjct: 60  MAVSRLRDCLDRQAHE-------------------LELNNLGL-SSLPELP-----PHLE 94

Query: 277 FLNLSHNLLVSL-QEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADI 335
            L  S N L  L + P S+ S+ + + +   L    P       Y+  SNN    +P ++
Sbjct: 95  SLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP----LLEYLGVSNNQLEKLP-EL 149

Query: 336 GNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVL 395
            N  S  +     NNSL   +P+        + +   NN L   +P     Q+   L  +
Sbjct: 150 QN-SSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQLE-ELPEL---QNLPFLTAI 200

Query: 396 NLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNF 455
               N+L       +      L+ +  G N L+      L N   L  +   NN +    
Sbjct: 201 YADNNSLK-----KLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TL 252

Query: 456 PCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEE 515
           P    +   L+ L ++ N  +     P++      L + +   +  S      + L    
Sbjct: 253 PDLPPS---LEALNVRDNYLTDLPELPQS---LTFLDVSENIFSGLSELPPNLYYLNASS 306

Query: 516 MMVAETKSGSELKHLRY-VISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEG 574
             +           L    +S+N+                L  +P     +  S N+   
Sbjct: 307 NEI--RSLCDLPPSLEELNVSNNKL-------------IELPALPPRLERLIASFNHLAE 351

Query: 575 PIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFL 634
            +PE      +L  L++ +N L    P    +++     DL MN+   ++P    +   L
Sbjct: 352 -VPELPQ---NLKQLHVEYNPLR-EFPDIPESVE-----DLRMNSHLAEVPELPQN---L 398

Query: 635 SVLNLSYNNL 644
             L++  N L
Sbjct: 399 KQLHVETNPL 408

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.6 bits (163), Expect = 8e-12
 Identities = 59/333 (17%), Positives = 104/333 (31%), Gaps = 61/333 (18%)

Query: 324 SNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPAC 383
            +++ T +P +  N  S+TEY+  A +      P    +     V  L +          
Sbjct: 19  HSSNLTEMPVEAENVKSKTEYY-NAWSEWERNAPPGNGEQREMAVSRLRDCLD------- 70

Query: 384 LIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCG-LQILDLGGNQLQGVVPKSLANCNMLQ 442
                      L L    L      +  P     L+ L    N L   +P+   +   L 
Sbjct: 71  ------RQAHELELNNLGL------SSLPELPPHLESLVASCNSLT-ELPELPQSLKSLL 117

Query: 443 VLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSG--HISCPRNNVSWPLLQIVDLASNK 500
           V +     +SD  P        L+ L + +N       +           L+I+D+ +N 
Sbjct: 118 VDNNNLKALSDLPP-------LLEYLGVSNNQLEKLPELQNSSF------LKIIDVDNNS 164

Query: 501 FS---GRLSQKWLLTMEEMMVAETKSGSELKHLRYV-ISSNQFYEVGVTVTVKGVETMLL 556
                        +      + E      L  L  +   +N                 L 
Sbjct: 165 LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL-------------KKLP 211

Query: 557 KVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLS 616
            +P    SI   +N  E     E+     L  +   +N L  ++P    +L+   +L++ 
Sbjct: 212 DLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLE---ALNVR 265

Query: 617 MNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 649
            N L+  +P    SL FL V    ++ L    P
Sbjct: 266 DNYLT-DLPELPQSLTFLDVSENIFSGLSELPP 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 25/179 (13%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            L+ S   ++    +     P+LE L++S N+L+   LP  P    L  LI S    +  
Sbjct: 301 YLNASSNEIR-SLCDLP---PSLEELNVSNNKLI--ELPALPPR--LERLIASFNHLA-E 351

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
           +P+   NL+ L    V         P    ++  L       N     +P L   +NLK 
Sbjct: 352 VPELPQNLKQL---HVEYNPLRE-FPDIPESVEDL-----RMNSHLAEVPEL--PQNLKQ 400

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFEN 179
           L +  N L       F +   ++  + ++   +      +      LE     ++   +
Sbjct: 401 LHVETNPLR-----EFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  136 bits (344), Expect = 2e-34
 Identities = 96/494 (19%), Positives = 179/494 (36%), Gaps = 50/494 (10%)

Query: 15  EKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWV 74
                +       L +  +      +      +  L     G      D +  L NLT +
Sbjct: 18  FTDTALAEKMKTVLGKTNV--TDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQI 73

Query: 75  EVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISS 134
                  T   P  + NLT+L  +  ++N  +  I  L    NL  L L  N ++     
Sbjct: 74  NFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLFNNQIT---DI 127

Query: 135 TFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFD 194
              + L NLN + LS N+++     +L  L +L+ L   N      L  ++N+++  L  
Sbjct: 128 DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQV--TDLKPLANLTT--LER 181

Query: 195 LDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDI 254
           LD+S N++     ++   +L NL +L  ++N+ S           I  L   + L  L +
Sbjct: 182 LDISSNKVSDISVLA---KLTNLESLIATNNQIS----------DITPLGILTNLDELSL 228

Query: 255 SNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIP-H 313
           + NQ+  +I          NL  L+L++N + +L     ++ +  L L +NQ+    P  
Sbjct: 229 NGNQL-KDIGTL---ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA 284

Query: 314 MSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSN 373
             T  + ++ + N    I   I N +    Y     N++  + P S    +  Q L   N
Sbjct: 285 GLTALTNLELNENQLEDISP-ISN-LKNLTYLTLYFNNISDISPVSSLTKL--QRLFFYN 340

Query: 374 NNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPK 433
           N +S       +    T +  L+ G N ++         R   +  L L           
Sbjct: 341 NKVSDVSSLANL----TNINWLSAGHNQISDLTPLANLTR---ITQLGLNDQAWTNAPVN 393

Query: 434 SLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQI 493
             AN ++   +      +    P  + +  S     +  N  S        + ++     
Sbjct: 394 YKANVSIPNTVKNVTGALIA--PATISDGGSYTEPDITWNLPSYT---NEVSYTFSQPVT 448

Query: 494 VDLASNKFSGRLSQ 507
           +   +  FSG ++Q
Sbjct: 449 IGKGTTTFSGTVTQ 462

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  132 bits (335), Expect = 2e-33
 Identities = 90/435 (20%), Positives = 171/435 (39%), Gaps = 45/435 (10%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
           TL     G++    + +  +  L  ++ S NQL    +      + L +++++    +  
Sbjct: 50  TLQADRLGIKS--IDGVEYLNNLTQINFSNNQL--TDITPLKNLTKLVDILMNNNQIAD- 104

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
               + NL NLT + +     T   P  + NLT L  ++ SSN  S  I +L    +L+ 
Sbjct: 105 -ITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQ 160

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           L    N ++          L  L  + +S N +  S    L  L NLE+L  +NNQ  + 
Sbjct: 161 LSFG-NQVTDLKPL---ANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISD- 213

Query: 181 LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVI 240
           +  +  +++  L +L L+GN+L+    I  +  L NL  LDL++N+ S           +
Sbjct: 214 ITPLGILTN--LDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISN----------L 258

Query: 241 PILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLL 300
             L   ++L+ L +  NQI    P      G   L  L L+ N L  +    ++ ++  L
Sbjct: 259 APLSGLTKLTELKLGANQISNISPL----AGLTALTNLELNENQLEDISPISNLKNLTYL 314

Query: 301 DLHSNQLRGNIP-HMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPES 359
            L+ N +    P    T    + + NN  + + + + N ++   +  A +N +  + P +
Sbjct: 315 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS-LAN-LTNINWLSAGHNQISDLTPLA 372

Query: 360 VCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQI 419
               I    L L++   +           +  + + N  +N     ++            
Sbjct: 373 NLTRI--TQLGLNDQAWTN-----APVNYKANVSIPNTVKNVTGALIAPATISDGGSYTE 425

Query: 420 LDLGGNQLQGVVPKS 434
            D+  N        S
Sbjct: 426 PDITWNLPSYTNEVS 440

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  121 bits (306), Expect = 1e-29
 Identities = 87/384 (22%), Positives = 146/384 (38%), Gaps = 41/384 (10%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            L L    +     + +  +  L  L+LS N +    +      +SL+ L         T
Sbjct: 116 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFGN---QVT 168

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
               + NL  L  +++     +      +A LT L  +  ++N  S  I  L    NL  
Sbjct: 169 DLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD-ITPLGILTNLDE 225

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           L L+ N L   I +     L NL  + L++N ++   P  L  L  L  L L  NQ  N 
Sbjct: 226 LSLNGNQLKD-IGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN- 279

Query: 181 LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVI 240
           +  ++ +++  L +L+L+ N+LE   PIS    L+NL  L L  N  S           I
Sbjct: 280 ISPLAGLTA--LTNLELNENQLEDISPIS---NLKNLTYLTLYFNNISD----------I 324

Query: 241 PILKNQSQLSGLDISNNQIPGEIPNWIWEVGN-GNLNFLNLSHNLLVSLQEPYSISSIRL 299
             + + ++L  L   NN++     + +  + N  N+N+L+  HN +  L    +++ I  
Sbjct: 325 SPVSSLTKLQRLFFYNNKV-----SDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQ 379

Query: 300 LDLHSNQLRGNIPHMSTNTSYVD--YSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIP 357
           L L+         +   N S  +   +       PA I +  S TE     N        
Sbjct: 380 LGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLP--SYTN 437

Query: 358 ESVCKGIYFQVLDLSNNNLSGTIP 381
           E          +       SGT+ 
Sbjct: 438 EVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  116 bits (293), Expect = 6e-28
 Identities = 98/521 (18%), Positives = 194/521 (37%), Gaps = 78/521 (14%)

Query: 108 HIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNL 167
            I +           L   N++  +S T  +Q+  L       + L       +  L NL
Sbjct: 16  QIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQA-----DRLGIKSIDGVEYLNNL 70

Query: 168 ETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKF 227
             +  SNNQ  + +  + N++   L D+ ++ N++    P++    L NL  L L +N+ 
Sbjct: 71  TQINFSNNQLTD-ITPLKNLTK--LVDILMNNNQIADITPLA---NLTNLTGLTLFNNQI 124

Query: 228 SRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVS 287
           +           I  LKN + L+ L++S+N I  +I       G  +L  L+  + +   
Sbjct: 125 T----------DIDPLKNLTNLNRLELSSNTI-SDISALS---GLTSLQQLSFGNQVT-D 169

Query: 288 LQEPYSISSIRLLDLHSNQLRGNIPHMSTNTS--YVDYSNNHFTFIPADIGNFMSETEYF 345
           L+   +++++  LD+ SN++  +I  ++  T+   +  +NN  + I   +G  ++  +  
Sbjct: 170 LKPLANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITP-LGI-LTNLDEL 226

Query: 346 FAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGT 405
               N L  +   +    +    LDL+NN +S   P   +    T L  L LG N ++  
Sbjct: 227 SLNGNQLKDIGTLASLTNL--TDLDLANNQISNLAPLSGL----TKLTELKLGANQISNI 280

Query: 406 LSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSL 465
                      L  L+L  NQL+ + P  ++N   L  L L  N+ISD  P  + + + L
Sbjct: 281 SPLAGLTA---LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL 333

Query: 466 QVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGS 525
           Q L   +N  S       +  +   +  +    N+ S                      +
Sbjct: 334 QRLFFYNNKVSD----VSSLANLTNINWLSAGHNQISD-----------------LTPLA 372

Query: 526 ELKHLRYV-ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFK 584
            L  +  + ++   +    V           + +PN   ++  +        P  +    
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNYKA------NVSIPNTVKNVTGALI-----APATISDGG 421

Query: 585 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 625
           S    +++ N  +           Q  ++       SG + 
Sbjct: 422 SYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  104 bits (262), Expect = 5e-24
 Identities = 97/509 (19%), Positives = 166/509 (32%), Gaps = 118/509 (23%)

Query: 138 EQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDL 197
             L      +L   ++  ++      L  + TL       ++ +  +  +++  L  ++ 
Sbjct: 21  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-IDGVEYLNN--LTQINF 75

Query: 198 SGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNN 257
           S N+L     I+ +  L  L  + +++N+ +           I  L N + L+GL + NN
Sbjct: 76  SNNQLTD---ITPLKNLTKLVDILMNNNQIAD----------ITPLANLTNLTGLTLFNN 122

Query: 258 QIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIP-HMST 316
           QI    P         NLN L LS N +  +     ++S++ L    NQ+    P    T
Sbjct: 123 QITDIDPLK----NLTNLNRLELSSNTISDISALSGLTSLQQLSF-GNQVTDLKPLANLT 177

Query: 317 NTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNL 376
               +D S+N  + I               A   +L              + L  +NN +
Sbjct: 178 TLERLDISSNKVSDISV------------LAKLTNL--------------ESLIATNNQI 211

Query: 377 SGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLA 436
           S   P  ++    T L  L+L  N L              L  LDL  NQ+  + P  L+
Sbjct: 212 SDITPLGIL----TNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP--LS 262

Query: 437 NCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDL 496
               L  L L  N IS+  P  L   ++L  L L  N     IS   N  +   L  + L
Sbjct: 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED-ISPISNLKN---LTYLTL 316

Query: 497 ASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLL 556
             N  S                      S L  L                          
Sbjct: 317 YFNNISD-----------------ISPVSSLTKL-------------------------- 333

Query: 557 KVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLS 616
                   + F +N         +    ++  L+  HN ++   P    NL +I  L L+
Sbjct: 334 ------QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383

Query: 617 MNNLSGKIPAQLASLNFLSVLNLSYNNLV 645
               +       A+++  + +      L+
Sbjct: 384 DQAWTNAPVNYKANVSIPNTVKNVTGALI 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 92.3 bits (230), Expect = 5e-20
 Identities = 85/487 (17%), Positives = 163/487 (33%), Gaps = 99/487 (20%)

Query: 167 LETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNK 226
           L +  ++ +   NQ+   + ++        L    +   V  +   +L  + TL      
Sbjct: 3   LGSATITQDTPINQIFTDTALAE--KMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLG 57

Query: 227 FSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLV 286
                        I  +     L+                       NL  +N S+N L 
Sbjct: 58  -------------IKSIDGVEYLN-----------------------NLTQINFSNNQLT 81

Query: 287 SLQEPYSISSIRLLDLHSNQLRGNIPHMS--TNTSYVDYSNNHFTFIPADIGNFMSETEY 344
            +    +++ +  + +++NQ+  +I  ++  TN + +   NN  T I   + N ++    
Sbjct: 82  DITPLKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLFNNQITDIDP-LKN-LTNLNR 138

Query: 345 FFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNG 404
              ++N++  +   S    +  Q L   N        A L     TTL  L++  N ++ 
Sbjct: 139 LELSSNTISDISALSGLTSL--QQLSFGNQVTDLKPLANL-----TTLERLDISSNKVSD 191

Query: 405 TLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASS 464
               ++  +   L+ L    NQ+  + P  L     L  L L  N + D     L + ++
Sbjct: 192 I---SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LASLTN 244

Query: 465 LQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSG 524
           L  L L +N  S              L  + L +N+ S                      
Sbjct: 245 LTDLDLANNQISNLAPLS----GLTKLTELKLGANQISN-----------------ISPL 283

Query: 525 SELKHLRYV-ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRF 583
           + L  L  + ++ NQ  ++          + +  + N+ T +    NN     P  +   
Sbjct: 284 AGLTALTNLELNENQLEDI----------SPISNLKNL-TYLTLYFNNISDISP--VSSL 330

Query: 584 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 643
             L  L   +N ++    SS  NL  I  L    N +S   P  LA+L  ++ L L+   
Sbjct: 331 TKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386

Query: 644 LVGKIPT 650
                  
Sbjct: 387 WTNAPVN 393

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  132 bits (334), Expect = 4e-34
 Identities = 72/320 (22%), Positives = 137/320 (42%), Gaps = 33/320 (10%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            L ++   +     + I  +  LE L+L+ NQ+    +        L NL +     +  
Sbjct: 48  KLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQI--TDISPLSNLVKLTNLYIGTNKITD- 102

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
              ++ NL NL  + +   N +   P  +ANLT+++ ++  +NH    +  L     L Y
Sbjct: 103 -ISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           L ++ + +      T    L +L  + L++N +    P  L  L +L       NQ  + 
Sbjct: 160 LTVTESKVK---DVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD- 213

Query: 181 LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSR----------- 229
           +  ++N++   L  L +  N++     +S +  L  L  L++ +N+ S            
Sbjct: 214 ITPVANMTR--LNSLKIGNNKITD---LSPLANLSQLTWLEIGTNQISDINAVKDLTKLK 268

Query: 230 -LRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSL 288
            L + S++   I +L N SQL+ L ++NNQ+  E    I   G  NL  L LS N +  +
Sbjct: 269 MLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIG--GLTNLTTLFLSQNHITDI 326

Query: 289 QEPYSISSIRLLDLHSNQLR 308
           +   S+S +   D  +  ++
Sbjct: 327 RPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (311), Expect = 5e-31
 Identities = 70/431 (16%), Positives = 149/431 (34%), Gaps = 87/431 (20%)

Query: 47  LRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFS 106
              L       +   PD+  +L       +++ + T  +      L  +  +  +    +
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA 57

Query: 107 GHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPN 166
             I  +    NL+YL+L+ N ++     +    LV L  + +  N +  +   +L  L N
Sbjct: 58  -SIQGIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKI--TDISALQNLTN 111

Query: 167 LETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNK 226
           L  L+L+ +   + +  ++N++   ++ L+L  N       +S +  +  L  L ++ +K
Sbjct: 112 LRELYLNEDNISD-ISPLANLTK--MYSLNLGANHNLS--DLSPLSNMTGLNYLTVTESK 166

Query: 227 FSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLV 286
                        +  + N + L  L ++ NQI    P         +L++     N + 
Sbjct: 167 VKD----------VTPIANLTDLYSLSLNYNQIEDISPLA----SLTSLHYFTAYVNQIT 212

Query: 287 SLQEPYSISSIRLLDLHSNQLRGNIP-HMSTNTSYVDYSNNHFTFIPADIGNFMSETEYF 345
            +    +++ +  L + +N++    P    +  ++++   N  + I A            
Sbjct: 213 DITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINA------------ 260

Query: 346 FAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGT 405
                 L              ++L++ +N +S  I                   NNL+  
Sbjct: 261 VKDLTKL--------------KMLNVGSNQISD-ISVL----------------NNLS-- 287

Query: 406 LSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSL 465
                      L  L L  NQL     + +     L  L L  NHI+D  P  L + S +
Sbjct: 288 ----------QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335

Query: 466 QVLVLQSNNFS 476
                 +    
Sbjct: 336 DSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  122 bits (309), Expect = 8e-31
 Identities = 70/379 (18%), Positives = 155/379 (40%), Gaps = 38/379 (10%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
           TL      +   FP+  L         L +  +    +    +  S+  L+++G   +  
Sbjct: 4   TLATLPAPINQIFPDADL--AEGIRAVLQKASV--TDVVTQEELESITKLVVAGEKVAS- 58

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
               I  L NL ++ +     T   P  ++NL +L ++   +N  +  I +L    NL+ 
Sbjct: 59  -IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISALQNLTNLRE 114

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           L L+ +N+S         ++ +LN   L  N    S    L  +  L  L ++ ++ ++ 
Sbjct: 115 LYLNEDNISDISPLANLTKMYSLN---LGANHN-LSDLSPLSNMTGLNYLTVTESKVKD- 169

Query: 181 LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVI 240
           +  I+N++   L+ L L+ N++E    IS +  L +L+      N+ +           I
Sbjct: 170 VTPIANLTD--LYSLSLNYNQIED---ISPLASLTSLHYFTAYVNQITD----------I 214

Query: 241 PILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLL 300
             + N ++L+ L I NN+I  ++           L +L +  N +  +     ++ +++L
Sbjct: 215 TPVANMTRLNSLKIGNNKI-TDLSPL---ANLSQLTWLEIGTNQISDINAVKDLTKLKML 270

Query: 301 DLHSNQLRGNIPHMSTNTS--YVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPE 358
           ++ SNQ+  +I  ++  +    +  +NN       ++   ++     F + N +  + P 
Sbjct: 271 NVGSNQIS-DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL 329

Query: 359 SVCKGIYFQVLDLSNNNLS 377
           +    +     D +N  + 
Sbjct: 330 ASLSKM--DSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  111 bits (279), Expect = 7e-27
 Identities = 67/364 (18%), Positives = 143/364 (39%), Gaps = 44/364 (12%)

Query: 118 LKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQF 177
              L      ++         + +   L      S+   +      L ++  L ++  + 
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVL---QKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 178 ENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKP 237
            + +  I  +++  L  L+L+GN++    P+S    L  L  L + +NK +         
Sbjct: 57  AS-IQGIEYLTN--LEYLNLNGNQITDISPLS---NLVKLTNLYIGTNKITD-------- 102

Query: 238 RVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGN-GNLNFLNLSHNLLVSLQEPYS-IS 295
             I  L+N + L  L ++ + I    P     + N   +  LNL  N  +S   P S ++
Sbjct: 103 --ISALQNLTNLRELYLNEDNISDISP-----LANLTKMYSLNLGANHNLSDLSPLSNMT 155

Query: 296 SIRLLDLHSNQLRGNIPHMSTNTS--YVDYSNNHFTFIPADIGNFMSETEYFFAANNSLV 353
            +  L +  ++++ ++  ++  T    +  + N    I   + + ++   YF A  N + 
Sbjct: 156 GLNYLTVTESKVK-DVTPIANLTDLYSLSLNYNQIEDISP-LAS-LTSLHYFTAYVNQIT 212

Query: 354 GVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPR 413
            + P +    +    L + NN ++   P   +    + L  L +G N ++          
Sbjct: 213 DITPVANMTRL--NSLKIGNNKITDLSPLANL----SQLTWLEIGTNQISDI---NAVKD 263

Query: 414 NCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSN 473
              L++L++G NQ+  +    L N + L  L L NN + +     +G  ++L  L L  N
Sbjct: 264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 474 NFSG 477
           + + 
Sbjct: 322 HITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  100 bits (251), Expect = 4e-23
 Identities = 78/457 (17%), Positives = 149/457 (32%), Gaps = 114/457 (24%)

Query: 167 LETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNK 226
             TL        NQ+   ++++        L    +   V      EL ++  L ++  K
Sbjct: 2   AATLATLPAPI-NQIFPDADLAE--GIRAVLQKASVTDVVTQE---ELESITKLVVAGEK 55

Query: 227 FSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLV 286
            +           I  ++  + L  L+++ NQI    P          L  L +  N + 
Sbjct: 56  VAS----------IQGIEYLTNLEYLNLNGNQITDISPL----SNLVKLTNLYIGTNKIT 101

Query: 287 SLQEPYSISSIRLLDLHSNQLRGNIPHMS--TNTSYVDYSNNHFTFIPADIGNFMSETEY 344
            +    +++++R L L+ + +   I  ++  T    ++   NH     + + N       
Sbjct: 102 DISALQNLTNLRELYLNEDNISD-ISPLANLTKMYSLNLGANHNLSDLSPLSNM------ 154

Query: 345 FFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNG 404
                  L                L ++ + +    P   IA   T L  L+L  N +  
Sbjct: 155 -----TGL--------------NYLTVTESKVKDVTP---IANL-TDLYSLSLNYNQIED 191

Query: 405 TLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASS 464
                       L       NQ+  + P  +AN   L  L + NN I+D  P  L N S 
Sbjct: 192 ISP---LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQ 244

Query: 465 LQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSG 524
           L  L + +N  S  I+  ++      L+++++ SN+ S                 +    
Sbjct: 245 LTWLEIGTNQISD-INAVKDLTK---LKMLNVGSNQIS-----------------DISVL 283

Query: 525 SELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFK 584
           + L  L                                 S+  ++N       E +G   
Sbjct: 284 NNLSQL--------------------------------NSLFLNNNQLGNEDMEVIGGLT 311

Query: 585 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 621
           +L  L +S N +T   P    +L +++S D +   + 
Sbjct: 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 95.3 bits (238), Expect = 2e-21
 Identities = 75/399 (18%), Positives = 140/399 (35%), Gaps = 58/399 (14%)

Query: 249 LSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLR 308
            + L      I    P+              L    +  +     + SI  L +   ++ 
Sbjct: 2   AATLATLPAPINQIFPD----ADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVA 57

Query: 309 GNIPHMS--TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYF 366
            +I  +   TN  Y++ + N  T I   + N   +    +   N +  +        +  
Sbjct: 58  -SIQGIEYLTNLEYLNLNGNQITDISP-LSNL-VKLTNLYIGTNKITDISALQNLTNL-- 112

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
           + L L+ +N+S   P   +A   T +  LNLG N+    LS        GL  L +  ++
Sbjct: 113 RELYLNEDNISDISP---LANL-TKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESK 166

Query: 427 LQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNV 486
           ++ V P  +AN   L  L L  N I D  P  L + +SL       N     I+      
Sbjct: 167 VKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ----ITDITPVA 218

Query: 487 SWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV-ISSNQFYEVGVT 545
           +   L  + + +NK +                      + L  L ++ I +NQ       
Sbjct: 219 NMTRLNSLKIGNNKITD-----------------LSPLANLSQLTWLEIGTNQI------ 255

Query: 546 VTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFG 605
             +  V+ +      +   ++  SN         +     L +L +++N L        G
Sbjct: 256 SDINAVKDL----TKL-KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 606 NLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
            L  + +L LS N+++   P  LASL+ +   + +   +
Sbjct: 309 GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 94.9 bits (237), Expect = 2e-21
 Identities = 45/230 (19%), Positives = 95/230 (41%), Gaps = 19/230 (8%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
           +L+L            +  +  L  L ++E+++    +      + L +L L+       
Sbjct: 136 SLNLGANHNL-SDLSPLSNMTGLNYLTVTESKV--KDVTPIANLTDLYSLSLNYNQIED- 191

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
               + +L +L +        T   P  +AN+T+L  +   +N  +  +  L     L +
Sbjct: 192 -ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSPLANLSQLTW 247

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           L++  N +S  I++   + L  L ++ +  N ++      L  L  L +L+L+NNQ  N+
Sbjct: 248 LEIGTNQISD-INA--VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNE 302

Query: 181 LPE-ISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSR 229
             E I  +++  L  L LS N +     I  +  L  + + D ++    +
Sbjct: 303 DMEVIGGLTN--LTTLFLSQNHITD---IRPLASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.7 bits (187), Expect = 5e-15
 Identities = 59/307 (19%), Positives = 118/307 (38%), Gaps = 39/307 (12%)

Query: 349 NNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSD 408
             S+  V+ +   + I    L ++   ++ +I      +  T L  LNL  N +      
Sbjct: 31  KASVTDVVTQEELESI--TKLVVAGEKVA-SIQG---IEYLTNLEYLNLNGNQITDI--- 81

Query: 409 TIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVL 468
           +       L  L +G N++      +L N   L+ L L  ++ISD  P  L N + +  L
Sbjct: 82  SPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP--LANLTKMYSL 137

Query: 469 VLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFS-----GRLSQKWLLTMEEMMVAETKS 523
            L +N+    +S   N      L  + +  +K         L+  + L++    + +   
Sbjct: 138 NLGANHNLSDLSPLSNMTG---LNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP 194

Query: 524 GSELKHLRY-VISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGR 582
            + L  L Y     NQ  ++          T +  +  +  S+   +N      P  +  
Sbjct: 195 LASLTSLHYFTAYVNQITDI----------TPVANMTRL-NSLKIGNNKITDLSP--LAN 241

Query: 583 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 642
              L  L +  N ++    ++  +L +++ L++  N +S  I   L +L+ L+ L L+ N
Sbjct: 242 LSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD-ISV-LNNLSQLNSLFLNNN 297

Query: 643 NLVGKIP 649
            L  +  
Sbjct: 298 QLGNEDM 304

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  130 bits (329), Expect = 3e-32
 Identities = 109/555 (19%), Positives = 193/555 (34%), Gaps = 63/555 (11%)

Query: 99  DFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIP 158
           D  S  F+  IPS   +  +K LDLSFN ++            NL +++L  + +N +I 
Sbjct: 11  DGRSRSFT-SIPS-GLTAAMKSLDLSFNKITYIGHGDL-RACANLQVLILKSSRIN-TIE 66

Query: 159 RSLFL-LPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNL 217
              F  L +LE L LS+N   + L        S L  L+L GN  +     S+   L NL
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125

Query: 218 YTLDLSS-NKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLN 276
            TL + +   FS +R               + L+ L+I    +       +      +++
Sbjct: 126 QTLRIGNVETFSEIRRID--------FAGLTSLNELEIKALSLRNYQSQSL--KSIRDIH 175

Query: 277 FLNLSHNLLVSLQEPY--SISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPAD 334
            L L  +    L E +   +SS+R L+L    L         +   VD  ++    +   
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF----QFSPLPVDEVSSPMKKLAFR 231

Query: 335 IGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGV 394
                 E+          +  + E          L   N + S  +   L      T+  
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS-ELGKVETVTIRR 290

Query: 395 LNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDN 454
           L++ +  L   LS   +     ++ + +  +++  V      +   L+ LDL  N + + 
Sbjct: 291 LHIPQFYLFYDLSTV-YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 455 FPCW---LGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLL 511
           +       G   SLQ LVL  N+           ++   L  +D++ N F          
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH--------- 400

Query: 512 TMEEMMVAETKSGSELKHLRYV-ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSN 570
            M +            + +R++ +SS     V               +P     +D S+N
Sbjct: 401 PMPDSC-------QWPEKMRFLNLSSTGIRVVK------------TCIPQTLEVLDVSNN 441

Query: 571 NFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS 630
           N +      +     L  L +S N L  ++P +      +  + +S N L          
Sbjct: 442 NLDS-FSLFL---PRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDR 495

Query: 631 LNFLSVLNLSYNNLV 645
           L  L  + L  N   
Sbjct: 496 LTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  130 bits (328), Expect = 4e-32
 Identities = 78/508 (15%), Positives = 174/508 (34%), Gaps = 58/508 (11%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
             D          P  +     +++LDLS N++      +    ++L+ LIL  +  +  
Sbjct: 9   VCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFS--GHIPSLHKSRNL 118
             D+  +L +L  +++   + +         L+ L +++   N +   G         NL
Sbjct: 66  EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125

Query: 119 KYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFE 178
           + L +        I    +  L +LN + +   SL     +SL  + ++  L L  ++  
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 179 NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPR 238
             L   +++                          L ++  L+L     +R + +     
Sbjct: 186 FLLEIFADI--------------------------LSSVRYLELRDTNLARFQFSPLPVD 219

Query: 239 VIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIR 298
            +     +    G  +++      +    + +    + F + + N L       S     
Sbjct: 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279

Query: 299 LLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPE 358
           L  + +  +R                  +  +  + + + + + +     N+ +  ++P 
Sbjct: 280 LGKVETVTIRRL-----------HIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPC 327

Query: 359 SVCKGI-YFQVLDLSNNNLS-GTIPACLIAQSETTLGVLNLGRNNLNGTLSDT--IFPRN 414
           S  + +   + LDLS N +    +       +  +L  L L +N+L  ++  T  I    
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTL 386

Query: 415 CGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNN 474
             L  LD+  N     +P S      ++ L+L +  I     C      +L+VL + +NN
Sbjct: 387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSNNN 442

Query: 475 FSGHISCPRNNVSWPLLQIVDLASNKFS 502
                S          LQ + ++ NK  
Sbjct: 443 LD---SFSLFLPR---LQELYISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  129 bits (327), Expect = 5e-32
 Identities = 89/609 (14%), Positives = 176/609 (28%), Gaps = 113/609 (18%)

Query: 21  PTLETLDLSENQLLQGSLPNFPKN--SSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRR 78
                 D              P    +++++L LS    +      +    NL  + ++ 
Sbjct: 5   DASGVCDGRSRSFTS-----IPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 79  CNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPS--LHKSRNLKYLDLSFNNLSGGISSTF 136
                    +  +L  L H+D S NH S  + S       +LKYL+L  N       ++ 
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 137 WEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLSNNQFENQLPEISNVSSSVLFDL 195
           +  L NL  + + +      I R  F  L +L  L +      N     S  S   +  L
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQSLKSIRDIHHL 177

Query: 196 DLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDIS 255
            L  +     +       L ++  L+L     +R + +      +     +    G  ++
Sbjct: 178 TLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236

Query: 256 NNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMS 315
           +      +    + +    + F + + N L       S     L  + +  +R       
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL----- 291

Query: 316 TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGI-YFQVLDLSNN 374
                      +  +  + + + + + +     N+ +  ++P S  + +   + LDLS N
Sbjct: 292 ------HIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSEN 344

Query: 375 NLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKS 434
            +                    L  +   G            LQ L L  N L+ +    
Sbjct: 345 LMVE----------------EYLKNSACKGAWPS--------LQTLVLSQNHLRSMQKTG 380

Query: 435 LANCNM--LQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQ 492
                +  L  LD+  N      P        ++ L L S                  L+
Sbjct: 381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR---VVKTCI--PQTLE 434

Query: 493 IVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV-ISSNQFYEVGVTVTVKGV 551
           ++D+++N                           L  L+ + IS N+             
Sbjct: 435 VLDVSNNNL-------------------DSFSLFLPRLQELYISRNKL------------ 463

Query: 552 ETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIE 611
                       ++  +S             F  L  + +S N L       F  L  ++
Sbjct: 464 -----------KTLPDASL------------FPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500

Query: 612 SLDLSMNNL 620
            + L  N  
Sbjct: 501 KIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  105 bits (265), Expect = 4e-24
 Identities = 58/378 (15%), Positives = 116/378 (30%), Gaps = 19/378 (5%)

Query: 275 LNFLNLSHNLLVSLQEPYSI-SSIRLLDLHSNQLRGNIPHMS----TNTSYVDYSNNHFT 329
               +       S+  P  + ++++ LDL  N++   I H       N   +   ++   
Sbjct: 7   SGVCDGRSRSFTSI--PSGLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN 63

Query: 330 FIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSE 389
            I  D    +   E+   ++N L  +           + L+L  N    T+    +  + 
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNL 122

Query: 390 TTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNN 449
           T L  L +G       +    F     L  L++    L+    +SL +   +  L L  +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 450 HISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKW 509
             +     +    SS++ L L+  N +     P                       S   
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 510 LLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSS 569
           LL +   +        EL  + +   +              V  +          +    
Sbjct: 243 LLKLLRYI-------LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295

Query: 570 NNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI---PA 626
                 +       + +  + + ++ +     S   +LK +E LDLS N +  +     A
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355

Query: 627 QLASLNFLSVLNLSYNNL 644
              +   L  L LS N+L
Sbjct: 356 CKGAWPSLQTLVLSQNHL 373

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 17/182 (9%)

Query: 1   TLDLSECGLQ--GKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFS 58
           TL LS+  L+   K  E +L +  L +LD+S N        +      +R L LS TG  
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR 423

Query: 59  GTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNL 118
             +   I   + L  ++V   N           L +L  +  S N     +P       L
Sbjct: 424 -VVKTCI--PQTLEVLDVSNNNLDS-FS---LFLPRLQELYISRNKLK-TLPDASLFPVL 475

Query: 119 KYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFE 178
             + +S N L   +    +++L +L  + L  N  + S PR  +L     + WL+ N  +
Sbjct: 476 LVMKISRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL-----SRWLNKNSQK 529

Query: 179 NQ 180
            Q
Sbjct: 530 EQ 531

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 1/88 (1%)

Query: 563 TSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG 622
             +   S+       +      SL  L++S N L+    S FG L  ++ L+L  N    
Sbjct: 53  QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 112

Query: 623 -KIPAQLASLNFLSVLNLSYNNLVGKIP 649
             + +   +L  L  L +       +I 
Sbjct: 113 LGVTSLFPNLTNLQTLRIGNVETFSEIR 140

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  125 bits (316), Expect = 7e-31
 Identities = 56/435 (12%), Positives = 129/435 (29%), Gaps = 46/435 (10%)

Query: 41  FPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDF 100
               +  +   ++ +     L     +  N+  +++     +      +A  T+L  ++ 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 101 SSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRS 160
           SSN        L     L+ LDL+ N +             ++  +  ++N+++  +  S
Sbjct: 66  SSNVLY-ETLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNIS-RVSCS 117

Query: 161 LFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTL 220
                  + ++L+NN+    L ++     S +  LDL  N ++      +      L  L
Sbjct: 118 RG--QGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 221 DLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNL 280
           +L  N              +      ++L  LD+S+N++   +           + +++L
Sbjct: 175 NLQYNFIYD----------VKGQVVFAKLKTLDLSSNKL-AFMGPEFQ--SAAGVTWISL 221

Query: 281 SHNLLVSLQEP-YSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFM 339
            +N LV +++      ++   DL  N                                  
Sbjct: 222 RNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL-------------------RDFFSKNQ 262

Query: 340 SETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGR 399
                       L G   E                +L       LIA       +L+   
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322

Query: 400 NNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWL 459
           +       +         + +D    Q + V+ +          L+ K   + +      
Sbjct: 323 SETERLECERENQAR--QREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380

Query: 460 GNASSLQVLVLQSNN 474
              + L   + Q+  
Sbjct: 381 RAHAELDGTLQQAVG 395

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (292), Expect = 9e-28
 Identities = 63/436 (14%), Positives = 134/436 (30%), Gaps = 43/436 (9%)

Query: 210 IIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWE 269
           I           ++ +   +   +        + ++   +  LD+S N +       +  
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALAS--------LRQSAWNVKELDLSGNPLSQISAADL-- 54

Query: 270 VGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFT 329
                L  LNLS N+L    +  S+S++R LDL++N ++  +     +   +  +NN+ +
Sbjct: 55  APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-ELLVG-PSIETLHAANNNIS 112

Query: 330 FIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSE 389
            +    G      +  + ANN +  +           Q LDL  N +  T+    +A S 
Sbjct: 113 RVSCSRGQGK---KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASS 168

Query: 390 TTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNN 449
            TL  LNL  N +   +   +      L+ LDL  N+L   +     +   +  + L+NN
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQVVFAK--LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224

Query: 450 HISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKW 509
            +       L  + +L+   L+ N F    +          +Q V   + K     +++ 
Sbjct: 225 KLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 510 LLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSS 569
                                        F +  + +  K    +               
Sbjct: 283 CTVPTLG---------HYGAYCCEDLPAPFADRLIALKRKEHALLSG------------Q 321

Query: 570 NNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLA 629
            +    +  E         ++         I       +   +L+     L  ++     
Sbjct: 322 GSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381

Query: 630 SLNFLSVLNLSYNNLV 645
           +   L          +
Sbjct: 382 AHAELDGTLQQAVGQI 397

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (260), Expect = 9e-24
 Identities = 61/460 (13%), Positives = 128/460 (27%), Gaps = 46/460 (10%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            LDLS   L       +     LE L+LS N L      +    S+LR L L+       
Sbjct: 38  ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY--ETLDLESLSTLRTLDLNNNYVQ-- 93

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLK 119
               +    ++  +     N +            +     ++N  +            ++
Sbjct: 94  ---ELLVGPSIETLHAANNNISRVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQ 147

Query: 120 YLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFEN 179
           YLDL  N +     +        L  + L +N +   +   +     L+TL LS+N+   
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAF 205

Query: 180 QLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRV 239
             PE  + +   +  + L  N+L   +    +   +NL   DL  N F    L       
Sbjct: 206 MGPEFQSAAG--VTWISLRNNKLVL-IE-KALRFSQNLEHFDLRGNGFHCGTLRD----- 256

Query: 240 IPILKNQSQLSGLDI-SNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPY------ 292
                   ++  +   +  ++ G+      E         +        L  P+      
Sbjct: 257 --FFSKNQRVQTVAKQTVKKLTGQN-----EEECTVPTLGHYGAYCCEDLPAPFADRLIA 309

Query: 293 -SISSIRLLDLHSNQLRGNIPHMSTNTS--YVDYSNNHFTFIPADIGNFMSETEYFFAAN 349
                  LL    ++                +D     +  +   +              
Sbjct: 310 LKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369

Query: 350 NSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACL--IAQSETTLGVLNLGRNNLNGTLS 407
            +L     +           +L            L    + ++ L +L            
Sbjct: 370 KAL-----DEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYV 424

Query: 408 DTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLK 447
           +    +N  ++  D+  ++   +  ++     +    DL 
Sbjct: 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA 464

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 79.5 bits (196), Expect = 8e-16
 Identities = 35/368 (9%), Positives = 94/368 (25%), Gaps = 27/368 (7%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKN-SSLRNLILSGTGFSG 59
            + L+   +             ++ LDL  N++   +      +  +L +L L       
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 60  TLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLK 119
            +   +     L  +++        + P   +   +  +   +N       +L  S+NL+
Sbjct: 183 DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240

Query: 120 YLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFEN 179
           + DL  N    G    F+ +     +  ++  ++     ++                 E+
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKN--QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

Query: 180 ----QLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASS 235
                   +  +       L   G+  E                +D    ++  +     
Sbjct: 299 LPAPFADRLIALKRKEHALLSGQGSETERLE--CERENQARQREIDALKEQYRTVIDQ-- 354

Query: 236 KPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSI- 294
                 +   +     L+     +  ++ N      +  L+         + LQ      
Sbjct: 355 ------VTLRKQAKITLEQKKKALDEQVSNGR--RAHAELDGTLQQAVGQIELQHATEEQ 406

Query: 295 ----SSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANN 350
                   ++  +           +      D   +  T +  +             A  
Sbjct: 407 SPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALA 466

Query: 351 SLVGVIPE 358
           S    + E
Sbjct: 467 SANATLQE 474

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 21/69 (30%), Positives = 31/69 (44%)

Query: 576 IPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLS 635
           I E            ++ ++L  ++ S   +   ++ LDLS N LS    A LA    L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 636 VLNLSYNNL 644
           +LNLS N L
Sbjct: 62  LLNLSSNVL 70

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  124 bits (312), Expect = 6e-30
 Identities = 76/402 (18%), Positives = 127/402 (31%), Gaps = 82/402 (20%)

Query: 116 RNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNN 175
                L++  + L+  +       +  L +     N+L  S+P      P L TL +S N
Sbjct: 40  NGNAVLNVGESGLTT-LPDCLPAHITTLVI---PDNNLT-SLPALP---PELRTLEVSGN 91

Query: 176 QFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASS 235
           Q  +       +    L         L              L  L +  N+ + L     
Sbjct: 92  QLTSLPVLPPGLLE--LSIFSNPLTHLPA--------LPSGLCKLWIFGNQLTSL----- 136

Query: 236 KPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSIS 295
            P + P       L  L +S+NQ+   +P          L  L   +N L SL  P   S
Sbjct: 137 -PVLPP------GLQELSVSDNQL-ASLPALP-----SELCKLWAYNNQLTSL--PMLPS 181

Query: 296 SIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGV 355
            ++ L +  NQL  ++P + +    +   NN  T +PA                      
Sbjct: 182 GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGL----------------- 223

Query: 356 IPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNC 415
                      + L +S N L+ ++P        + L  L +  N L      T  P   
Sbjct: 224 -----------KELIVSGNRLT-SLPVLP-----SELKELMVSGNRL------TSLPMLP 260

Query: 416 G-LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNN 474
             L  L +  NQL   +P+SL + +    ++L+ N +S+     L   +S          
Sbjct: 261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIR 319

Query: 475 FSGHI-SCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEE 515
           F     S PR   +  L     L   +              +
Sbjct: 320 FDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  119 bits (299), Expect = 3e-28
 Identities = 72/386 (18%), Positives = 128/386 (33%), Gaps = 61/386 (15%)

Query: 44  NSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSN 103
           N+    L +  +G + TLPD +    ++T + +   N T  +P     L  L   + S N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLTS-LPALPPELRTL---EVSGN 91

Query: 104 HFSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLF 162
             +  +P        L        +L    S      L  L +     N L  S+P    
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALPSG-----LCKLWI---FGNQLT-SLPVLP- 140

Query: 163 LLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDL 222
             P L+ L +S+NQ  +     S +       L    N+L      S+      L  L +
Sbjct: 141 --PGLQELSVSDNQLASLPALPSELCK-----LWAYNNQLT-----SLPMLPSGLQELSV 188

Query: 223 SSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSH 282
           S N+ + L      P +       S+L  L   NN++   +P          L  L +S 
Sbjct: 189 SDNQLASL------PTLP------SELYKLWAYNNRLT-SLPALP-----SGLKELIVSG 230

Query: 283 NLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSET 342
           N L SL  P   S ++ L +  N+L  ++P + +    +    N  T +P  + + +S  
Sbjct: 231 NRLTSL--PVLPSELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQLTRLPESLIH-LSSE 286

Query: 343 EYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNL 402
                  N L     +++ +          +  +         A +      L+L   + 
Sbjct: 287 TTVNLEGNPLSERTLQALREI---TSAPGYSGPI--IRFDMAGASAPRETRALHLAAADW 341

Query: 403 NGTLSDTIFPRNCGLQILDLGGNQLQ 428
              L               + G +  
Sbjct: 342 ---LVPAREGEPAPADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  117 bits (295), Expect = 7e-28
 Identities = 76/340 (22%), Positives = 121/340 (35%), Gaps = 62/340 (18%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            L++ E GL    P+ +     + TL + +N L   SLP  P    LR L +SG   + +
Sbjct: 44  VLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT--SLPALPPE--LRTLEVSGNQLT-S 95

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
           LP     L  L+       +    +P   + L +L       N  +  +P L     L+ 
Sbjct: 96  LPVLPPGLLELSIFSNPLTH----LPALPSGLCKL---WIFGNQLT-SLPVL--PPGLQE 145

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           L +S N L     ++       L  +   +N L  S+P        L+ L +S+NQ    
Sbjct: 146 LSVSDNQL-----ASLPALPSELCKLWAYNNQLT-SLPML---PSGLQELSVSDNQLA-S 195

Query: 181 LPE-ISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRV 239
           LP   S      L+ L    NRL      S+      L  L +S N+ + L      P +
Sbjct: 196 LPTLPSE-----LYKLWAYNNRLT-----SLPALPSGLKELIVSGNRLTSL------PVL 239

Query: 240 IPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSI---SS 296
                  S+L  L +S N++   +P          L  L++  N L  L  P S+   SS
Sbjct: 240 P------SELKELMVSGNRL-TSLPMLP-----SGLLSLSVYRNQLTRL--PESLIHLSS 285

Query: 297 IRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIG 336
              ++L  N L           +     +           
Sbjct: 286 ETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGA 325

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  115 bits (290), Expect = 4e-27
 Identities = 65/337 (19%), Positives = 114/337 (33%), Gaps = 54/337 (16%)

Query: 163 LLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDL 222
           L      L +      + L  + +   + +  L +  N L      S+      L TL++
Sbjct: 38  LNNGNAVLNVGE----SGLTTLPDCLPAHITTLVIPDNNLT-----SLPALPPELRTLEV 88

Query: 223 SSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSH 282
           S N+ + L      P + P L     LS        +P              L  L +  
Sbjct: 89  SGNQLTSL------PVLPPGLLE---LSIFSNPLTHLPALPS---------GLCKLWIFG 130

Query: 283 NLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSET 342
           N L SL  P     ++ L +  NQL  ++P + +    +   NN  T +P          
Sbjct: 131 NQLTSL--PVLPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLPSGL---- 183

Query: 343 EYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNL 402
           +    ++N L   +P    +      L   NN L+ ++PA       + L  L +  N L
Sbjct: 184 QELSVSDNQLA-SLPTLPSE---LYKLWAYNNRLT-SLPALP-----SGLKELIVSGNRL 233

Query: 403 NGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNA 462
             +L          L+ L + GN+L   +P   +    L  L +  N ++   P  L + 
Sbjct: 234 T-SLPVLP----SELKELMVSGNRLTS-LPMLPSG---LLSLSVYRNQLTR-LPESLIHL 283

Query: 463 SSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASN 499
           SS   + L+ N  S         ++        +   
Sbjct: 284 SSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRF 320

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 92.6 bits (230), Expect = 8e-20
 Identities = 52/306 (16%), Positives = 96/306 (31%), Gaps = 64/306 (20%)

Query: 214 LRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNG 273
                 L++  +  + L      P  +P     + ++ L I +N +   +P         
Sbjct: 39  NNGNAVLNVGESGLTTL------PDCLP-----AHITTLVIPDNNLT-SLPALP-----P 81

Query: 274 NLNFLNLSHNLLVSL-QEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIP 332
            L  L +S N L SL   P  +  + +       L        +    +    N  T +P
Sbjct: 82  ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP----SGLCKLWIFGNQLTSLP 137

Query: 333 ADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTL 392
                     +    ++N L   +P    +      L   NN L+ ++P        + L
Sbjct: 138 VLPPGL----QELSVSDNQL-ASLPALPSE---LCKLWAYNNQLT-SLPMLP-----SGL 183

Query: 393 GVLNLGRNNLNGTLSDTI---------------FPRNCG-LQILDLGGNQLQGVVPKSLA 436
             L++  N L  +L                    P     L+ L + GN+L   +P   +
Sbjct: 184 QELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVLPS 241

Query: 437 NCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDL 496
               L+ L +  N ++   P        L  L +  N  +     P + +       V+L
Sbjct: 242 E---LKELMVSGNRLTS-LPMLPSG---LLSLSVYRNQLT---RLPESLIHLSSETTVNL 291

Query: 497 ASNKFS 502
             N  S
Sbjct: 292 EGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.0 bits (205), Expect = 9e-17
 Identities = 62/395 (15%), Positives = 122/395 (30%), Gaps = 93/395 (23%)

Query: 247 SQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQ 306
           +  + L++  + +   +P+ +      ++  L +  N L SL  P     +R L++  NQ
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPA----HITTLVIPDNNLTSL--PALPPELRTLEVSGNQ 92

Query: 307 LRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYF 366
           L  ++P +      +   +N  T +PA                                 
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHLPALPSGL---------------------------- 123

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
             L +  N L+ ++P          L  L++  N L  +L          L  L    NQ
Sbjct: 124 CKLWIFGNQLT-SLPVLP-----PGLQELSVSDNQLA-SLPALP----SELCKLWAYNNQ 172

Query: 427 LQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNV 486
           L   +P   +    LQ L + +N ++   P        L     +  +     S      
Sbjct: 173 LT-SLPMLPSG---LQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSG----- 222

Query: 487 SWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTV 546
               L+ + ++ N+         L ++  +        SELK L   +S N+        
Sbjct: 223 ----LKELIVSGNR---------LTSLPVLP-------SELKELM--VSGNRL------- 253

Query: 547 TVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGN 606
                 T L  +P+   S+    N     +PE +    S   +N+  N L+     +   
Sbjct: 254 ------TSLPMLPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALRE 306

Query: 607 LKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSY 641
           +         +        +       L +    +
Sbjct: 307 ITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 78.4 bits (193), Expect = 3e-15
 Identities = 49/259 (18%), Positives = 82/259 (31%), Gaps = 28/259 (10%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            L +S+  L    P        L  L    NQL   SLP  P  S L+ L +S    + +
Sbjct: 145 ELSVSDNQLA-SLPALP---SELCKLWAYNNQL--TSLPMLP--SGLQELSVSDNQLA-S 195

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
           LP     L  L          T  +P   + L +L     S N  +  +P L     LK 
Sbjct: 196 LPTLPSELYKL---WAYNNRLT-SLPALPSGLKEL---IVSGNRLT-SLPVLP--SELKE 245

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           L +S N L+     +       L  + +  N L   +P SL  L +  T+ L  N    +
Sbjct: 246 LMVSGNRLT-----SLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299

Query: 181 LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVI 240
             +     +S       SG  +   +  +          L  +           +     
Sbjct: 300 TLQALREITSA---PGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRW 356

Query: 241 PILKNQSQLSGLDISNNQI 259
            +   +       +  +++
Sbjct: 357 HMFGQEDNADAFSLFLDRL 375

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.5 bits (188), Expect = 1e-14
 Identities = 62/334 (18%), Positives = 116/334 (34%), Gaps = 60/334 (17%)

Query: 316 TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNN 375
              + ++   +  T +P  +             +N+L   +P    +    + L++S N 
Sbjct: 40  NGNAVLNVGESGLTTLPDCLPA---HITTLVIPDNNLT-SLPALPPE---LRTLEVSGNQ 92

Query: 376 LSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSL 435
           L+ ++P       E  L + +    +L    S        GL  L + GNQL   +P   
Sbjct: 93  LT-SLPVLPPGLLE--LSIFSNPLTHLPALPS--------GLCKLWIFGNQLT-SLPVLP 140

Query: 436 ANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVD 495
                LQ L + +N ++ + P        L  L   +N  +   S P   +    LQ + 
Sbjct: 141 PG---LQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT---SLP---MLPSGLQELS 187

Query: 496 LASNKFS------GRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVK 549
           ++ N+ +        L +  L      + +     S LK L   +S N+           
Sbjct: 188 VSDNQLASLPTLPSELYK--LWAYNNRLTSLPALPSGLKELI--VSGNRL---------- 233

Query: 550 GVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQ 609
              T L  +P+    +  S N     +P        L +L++  N LT  +P S  +L  
Sbjct: 234 ---TSLPVLPSELKELMVSGNRLTS-LPMLPS---GLLSLSVYRNQLT-RLPESLIHLSS 285

Query: 610 IESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 643
             +++L  N LS +    L  +      +     
Sbjct: 286 ETTVNLEGNPLSERTLQALREITSAPGYSGPIIR 319

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.2 bits (169), Expect = 2e-12
 Identities = 57/277 (20%), Positives = 95/277 (34%), Gaps = 53/277 (19%)

Query: 372 SNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVV 431
               +   + ACL         VLN+G + L  TL D +      +  L +  N L   +
Sbjct: 26  GRAAVVQKMRACL----NNGNAVLNVGESGLT-TLPDCLPAH---ITTLVIPDNNLT-SL 76

Query: 432 PKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLL 491
           P        L+ L++  N ++ + P        L +      +     + P        L
Sbjct: 77  PALPPE---LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP---ALPSG------L 123

Query: 492 QIVDLASNKFS---GRLSQKWLLTMEEMMVAE-TKSGSELKHLRYVISSNQFYEVGVTVT 547
             + +  N+ +           L++ +  +A      SEL  L     +NQ         
Sbjct: 124 CKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLW--AYNNQL-------- 173

Query: 548 VKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNL 607
                T L  +P+    +  S N     +P        L+A N   N LT S+P+    L
Sbjct: 174 -----TSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYN---NRLT-SLPALPSGL 223

Query: 608 KQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
           K    L +S N L+  +P   + L     L +S N L
Sbjct: 224 K---ELIVSGNRLTS-LPVLPSELK---ELMVSGNRL 253

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  121 bits (305), Expect = 1e-29
 Identities = 71/396 (17%), Positives = 143/396 (36%), Gaps = 41/396 (10%)

Query: 86  PPSMANLTQLFHMDFSSNHFSGHIPS--LHKSRNLKYLDLSFNNLSGGISSTFWEQLVNL 143
             S + L  L  +          I +       +L  L L +N     + +  +  L NL
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-LETGAFNGLANL 105

Query: 144 NLVLLSHNSLNGS-IPRSLFL-LPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNR 201
            ++ L+  +L+G+ +  + F  L +LE L L +N  +   P    ++      LDL+ N+
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165

Query: 202 LEG-PVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIP 260
           ++       + F+ ++   L LSS     +                + ++ LD+S N   
Sbjct: 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225

Query: 261 GEIPNWIWEVGNGN-LNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTS 319
             +    ++   G  +  L LS++  +     ++       D  +   +G      +   
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN----FKDPDNFTFKGLEA---SGVK 278

Query: 320 YVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGT 379
             D S +    +   + +  ++                         + L L+ N ++  
Sbjct: 279 TCDLSKSKIFALLKSVFSHFTDL------------------------EQLTLAQNEIN-K 313

Query: 380 IPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCN 439
           I         T L  LNL +N L G++   +F     L++LDL  N ++ +  +S     
Sbjct: 314 IDDNAFWGL-THLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371

Query: 440 MLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNF 475
            L+ L L  N +           +SLQ + L +N +
Sbjct: 372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  109 bits (275), Expect = 1e-25
 Identities = 79/397 (19%), Positives = 143/397 (36%), Gaps = 42/397 (10%)

Query: 108 HIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPN 166
            +P L    ++ Y+DLS N+++  ++ T + +L +L  + +   +    I  + F  L +
Sbjct: 24  QVPEL--PAHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 167 LETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFE-LRNLYTLDLSSN 225
           L  L L  NQF   L   +    + L  L L+   L+G V     F+ L +L  L L  N
Sbjct: 81  LIILKLDYNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 226 KFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLL 285
              +++ AS          N  +   LD++ N++       +      +   L LS   L
Sbjct: 140 NIKKIQPAS-------FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL 192

Query: 286 VSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYF 345
             + E +               +   P  +T+ + +D S N F    A         + F
Sbjct: 193 QDMNEYWLGW-----------EKCGNPFKNTSITTLDLSGNGFKESMA---------KRF 232

Query: 346 FAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGT 405
           F A       I   +    Y       + N              + +   +L ++ +   
Sbjct: 233 FDAIAGTK--IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-A 289

Query: 406 LSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSL 465
           L  ++F     L+ L L  N++  +   +      L  L+L  N +         N   L
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349

Query: 466 QVLVLQSNNFSGHISCPRNNVSWPL--LQIVDLASNK 500
           +VL L  N    HI    +     L  L+ + L +N+
Sbjct: 350 EVLDLSYN----HIRALGDQSFLGLPNLKELALDTNQ 382

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 86.0 bits (213), Expect = 6e-18
 Identities = 67/361 (18%), Positives = 123/361 (34%), Gaps = 54/361 (14%)

Query: 1   TLDLSECGLQGKFPEKILQ-VPTLETLDLSENQLLQGSLPN--FPKNSSLRNLILSGTGF 57
            L + +            + + +L  L L  NQ L   L    F   ++L  L L+    
Sbjct: 58  FLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL--QLETGAFNGLANLEVLTLTQCNL 115

Query: 58  SGTLPDSIGNLENLTWVEVRRCNFTGPIPPSM-ANLTQLFHMDFSSNHFSGHIPS--LHK 114
            G                         +  +    LT L  +    N+     P+     
Sbjct: 116 DGA-----------------------VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152

Query: 115 SRNLKYLDLSFNNLSGGISSTF---------WEQLVNLNLVLLSHNSLNGSIPRSLFLLP 165
            R    LDL+FN +                   +L ++ L  ++   L      + F   
Sbjct: 153 MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212

Query: 166 NLETLWLSNNQFENQLPEI--SNVSSSVLFDLDLSGNRLEG-PVPISIIFELRNLYTLDL 222
           ++ TL LS N F+  + +     ++ + +  L LS +   G     +   +  N     L
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272

Query: 223 SSNKFSRLRLASSKPRVIP--ILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNL 280
            ++      L+ SK   +   +  + + L  L ++ N+I  +I +  +  G  +L  LNL
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFW-GLTHLLKLNL 330

Query: 281 SHNLLVSLQEP--YSISSIRLLDLHSNQLRGNIPHMS----TNTSYVDYSNNHFTFIPAD 334
           S N L S+      ++  + +LDL  N +R  +   S     N   +    N    +P  
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDG 389

Query: 335 I 335
           I
Sbjct: 390 I 390

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 83.3 bits (206), Expect = 4e-17
 Identities = 70/365 (19%), Positives = 121/365 (33%), Gaps = 37/365 (10%)

Query: 311 IPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYF-QVL 369
           +P +  + +YVD S N    +     + + + ++      +   VI  +  +G+    +L
Sbjct: 25  VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84

Query: 370 DLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGT-LSDTIFPRNCGLQILDLGGNQLQ 428
            L  N     +           L VL L + NL+G  LS   F     L++L L  N ++
Sbjct: 85  KLDYNQFL-QLETGAF-NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

Query: 429 GVVPKSL-ANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVS 487
            + P S   N     VLDL  N +       L N       +L+ ++ +         + 
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLG 201

Query: 488 WPL---------LQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQ 538
           W           +  +DL+ N F      K           ++   S   ++        
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFK-ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260

Query: 539 FYEVGVTVTVKGVETMLLKV-----------PNIF------TSIDFSSNNFEGPIPEEM- 580
           F +           + +               ++F        +  + N     I +   
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAF 319

Query: 581 GRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQL-ASLNFLSVLNL 639
                L  LN+S N L       F NL ++E LDLS N++   +  Q    L  L  L L
Sbjct: 320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELAL 378

Query: 640 SYNNL 644
             N L
Sbjct: 379 DTNQL 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (289), Expect = 7e-28
 Identities = 81/433 (18%), Positives = 146/433 (33%), Gaps = 83/433 (19%)

Query: 40  NFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMD 99
           N   +    ++ +               L N   V  +           + +  Q+  ++
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 75

Query: 100 FSSNHFSGHIP--SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSI 157
            +       I   +   +  ++ L + FN +   +    ++ +  L +++L  N L+ S+
Sbjct: 76  LNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS-SL 132

Query: 158 PRSLFL-LPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRN 216
           PR +F   P L TL +SNN  E  + + +  +++ L +L LS NRL   V +S+   + +
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTH-VDLSL---IPS 187

Query: 217 LYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLN 276
           L+  ++S N  S L                  +  LD S+N I   +   +    N  L 
Sbjct: 188 LFHANVSYNLLSTL-------------AIPIAVEELDASHNSI-NVVRGPV----NVELT 229

Query: 277 FLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIG 336
            L L HN L       +   +  +DL  N+L                       I     
Sbjct: 230 ILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL---------------------EKIMYHP- 267

Query: 337 NFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLN 396
                    F     L              + L +SNN L   +      Q   TL VL+
Sbjct: 268 ---------FVKMQRL--------------ERLYISNNRLV-ALNL--YGQPIPTLKVLD 301

Query: 397 LGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHIS-DNF 455
           L  N+L   +          L+ L L  N +  +   +      L+ L L +N    ++ 
Sbjct: 302 LSHNHLL-HVERNQPQ-FDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWDCNSL 356

Query: 456 PCWLGNASSLQVL 468
                N +   V 
Sbjct: 357 RALFRNVARPAVD 369

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  105 bits (265), Expect = 8e-25
 Identities = 61/336 (18%), Positives = 121/336 (36%), Gaps = 33/336 (9%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            +      ++      +     +E L+L++ Q+ +     F    +++ L +        
Sbjct: 49  IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 108

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSM-ANLTQLFHMDFSSNHFSGHIPS--LHKSRN 117
            P    N+  LT + + R + +  +P  +  N  +L  +  S+N+    I       + +
Sbjct: 109 PPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTS 166

Query: 118 LKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQF 177
           L+ L LS N L+    S       +L    +S+N L+     +L +   +E L  S+   
Sbjct: 167 LQNLQLSSNRLTHVDLSLIP----SLFHANVSYNLLS-----TLAIPIAVEELDASH--- 214

Query: 178 ENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKP 237
            N +  +    +  L  L L  N L      + +     L  +DLS N+  ++       
Sbjct: 215 -NSINVVRGPVNVELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNELEKIMYHP--- 267

Query: 238 RVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQ-EPYSISS 296
                     +L  L ISNN++   +  +        L  L+LSHN L+ ++        
Sbjct: 268 -----FVKMQRLERLYISNNRL-VALNLYGQ--PIPTLKVLDLSHNHLLHVERNQPQFDR 319

Query: 297 IRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIP 332
           +  L L  N +             +  S+N +    
Sbjct: 320 LENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNS 355

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  102 bits (257), Expect = 1e-23
 Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 40/343 (11%)

Query: 2   LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPN--FPKNSSLRNLILSGTGFSG 59
           + +        F  + + +   + +    + +    LP         +  L L+      
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEE 83

Query: 60  TLPDSIGNLENLTWVEVRRCNFTGPIPPSM-ANLTQLFHMDFSSNHFSGHIPS--LHKSR 116
               +      +  + +        +PP +  N+  L  +    N  S  +P    H + 
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 141

Query: 117 NLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQ 176
            L  L +S NNL   I    ++   +L  + LS N L   +  SL   P+L    +S N 
Sbjct: 142 KLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI--PSLFHANVSYNL 197

Query: 177 FENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSK 236
                  I+      + +LD S N +   V   +      L  L L  N  +        
Sbjct: 198 LSTLAIPIA------VEELDASHNSINV-VRGPV---NVELTILKLQHNNLTD------- 240

Query: 237 PRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEP-YSIS 295
                 L N   L  +D+S N++  +I    +      L  L +S+N LV+L      I 
Sbjct: 241 ---TAWLLNYPGLVEVDLSYNEL-EKIMYHPFV-KMQRLERLYISNNRLVALNLYGQPIP 295

Query: 296 SIRLLDLHSNQLRGNIPHMSTNTS---YVDYSNNHFTFIPADI 335
           ++++LDL  N L  ++            +   +N    +    
Sbjct: 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLST 337

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 99.0 bits (247), Expect = 2e-22
 Identities = 65/353 (18%), Positives = 123/353 (34%), Gaps = 48/353 (13%)

Query: 297 IRLLDLHSNQLRGNIPHMS-----TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNS 351
               D+H +    ++          N   V + N+    +PA + +   + E     +  
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 80

Query: 352 LVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIF 411
           +  +   +       Q L +  N +   +P  +       L VL L RN+L+ +L   IF
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNV-PLLTVLVLERNDLS-SLPRGIF 137

Query: 412 PRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQ 471
                L  L +  N L+ +   +      LQ L L +N ++      L    SL    + 
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVS 194

Query: 472 SNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLR 531
            N  S  ++ P        ++ +D + N  +  +                    EL  L+
Sbjct: 195 YNLLS-TLAIPIA------VEELDASHNSIN-VVRGPVN--------------VELTILK 232

Query: 532 YVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNM 591
             +  N   +             LL  P +   +D S N  E  +     + + L  L +
Sbjct: 233 --LQHNNLTDTAW----------LLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYI 279

Query: 592 SHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
           S+N L  ++      +  ++ LDLS N+L   +       + L  L L +N++
Sbjct: 280 SNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 89.3 bits (222), Expect = 3e-19
 Identities = 66/309 (21%), Positives = 105/309 (33%), Gaps = 34/309 (11%)

Query: 1   TLDLSECGLQGKFPEKILQ-VPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSG 59
            L +    ++   P  + Q VP L  L L  N L       F     L  L +S      
Sbjct: 97  KLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155

Query: 60  TLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLK 119
              D+     +L  +++     T  +  S   +  LFH + S N     + +L     ++
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLTH-VDLS--LIPSLFHANVSYNL----LSTLAIPIAVE 208

Query: 120 YLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFEN 179
            LD S N+++  +      +L  L L    HN+L       L   P L  + LS N+ E 
Sbjct: 209 ELDASHNSINV-VRGPVNVELTILKL---QHNNLT-DTA-WLLNYPGLVEVDLSYNELEK 262

Query: 180 QLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFE-LRNLYTLDLSSNKFSRLRLASSKPR 238
            +     V    L  L +S NRL     +++  + +  L  LDLS N    +       R
Sbjct: 263 -IMYHPFVKMQRLERLYISNNRLVA---LNLYGQPIPTLKVLDLSHNHLLHV------ER 312

Query: 239 VIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIR 298
             P       L  L + +N I   +           L  L LSHN            ++ 
Sbjct: 313 NQPQFDR---LENLYLDHNSI-VTLKLSTHH----TLKNLTLSHNDWDCNSLRALFRNVA 364

Query: 299 LLDLHSNQL 307
              +     
Sbjct: 365 RPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 88.2 bits (219), Expect = 7e-19
 Identities = 80/450 (17%), Positives = 151/450 (33%), Gaps = 115/450 (25%)

Query: 182 PEISNVSSSVLFDLDLSGNRLE-GPVPISIIFE---LRNLYTLDLSSNKFSRLRLASSKP 237
           PE   + S++ +D       ++     +   FE   L N   +   ++   +L  A    
Sbjct: 8   PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA---- 63

Query: 238 RVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQE--PYSIS 295
               +L +  Q+  L++++ QI  EI  + +      +  L +  N +  L      ++ 
Sbjct: 64  ----LLDSFRQVELLNLNDLQI-EEIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQNVP 117

Query: 296 SIRLLDLHSNQLR---GNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSL 352
            + +L L  N L      I H +   + +  SNN+   I  D           F A  SL
Sbjct: 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT----------FQATTSL 167

Query: 353 VGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFP 412
                         Q L LS+N L+  +   LI      L   N+  N L      +   
Sbjct: 168 --------------QNLQLSSNRLT-HVDLSLIPS----LFHANVSYNLL------STLA 202

Query: 413 RNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQS 472
               ++ LD   N +  V          L +L L++N+++D    WL N   L  + L  
Sbjct: 203 IPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTD--TAWLLNYPGLVEVDLSY 257

Query: 473 NNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRY 532
           N                  ++  +  + F                         ++ L  
Sbjct: 258 N------------------ELEKIMYHPFVK-----------------------MQRLER 276

Query: 533 V-ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNM 591
           + IS+N+   +               +P +   +D S N+    +     +F  L  L +
Sbjct: 277 LYISNNRLVAL---------NLYGQPIPTL-KVLDLSHNHLLH-VERNQPQFDRLENLYL 325

Query: 592 SHNALTGSIPSSFGNLKQIESLDLSMNNLS 621
            HN++  ++         +++L LS N+  
Sbjct: 326 DHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 36/241 (14%), Positives = 75/241 (31%), Gaps = 41/241 (17%)

Query: 408 DTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQV 467
           D+    +C    + +                N  +++  KN+ +       L +   +++
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 468 LVLQSNNFSGHISCPRNNVSWPL--LQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGS 525
           L L        I             +Q + +  N                          
Sbjct: 74  LNLNDL----QIEEIDTYAFAYAHTIQKLYMGFNAIR---------------YLPPHVFQ 114

Query: 526 ELKHLRYV-ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGR-F 583
            +  L  + +  N    +           +    P + T++  S+NN E  I ++  +  
Sbjct: 115 NVPLLTVLVLERNDLSSLP--------RGIFHNTPKL-TTLSMSNNNLER-IEDDTFQAT 164

Query: 584 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 643
            SL  L +S N LT  +      +  +   ++S N LS      LA    +  L+ S+N+
Sbjct: 165 TSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS 216

Query: 644 L 644
           +
Sbjct: 217 I 217

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (290), Expect = 2e-27
 Identities = 70/341 (20%), Positives = 128/341 (37%), Gaps = 46/341 (13%)

Query: 142 NLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNR 201
              L+ L  N +           P+LE L L+ N        +S V      +       
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-------VSAVEPGAFNN------- 78

Query: 202 LEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPG 261
                       L NL TL L SN+   + L         +    S L+ LDIS N+I  
Sbjct: 79  ------------LFNLRTLGLRSNRLKLIPLG--------VFTGLSNLTKLDISENKI-V 117

Query: 262 EIPNWIWEVGNGNLNFLNLSHNLLVSLQEP--YSISSIRLLDLHSNQLRGNIPHMS---- 315
            + +++++    NL  L +  N LV +       ++S+  L L    L  +IP  +    
Sbjct: 118 ILLDYMFQ-DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHL 175

Query: 316 TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNN 375
                +   + +   I       +   +    ++   +  +  +   G+    L +++ N
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235

Query: 376 LSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSL 435
           L+  +P   +      L  LNL  N ++ T+  ++      LQ + L G QL  V P + 
Sbjct: 236 LT-AVPYLAVRHL-VYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292

Query: 436 ANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS 476
              N L+VL++  N ++        +  +L+ L+L SN  +
Sbjct: 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  108 bits (271), Expect = 3e-25
 Identities = 64/314 (20%), Positives = 110/314 (35%), Gaps = 25/314 (7%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            +           PE I        LDL +N++   +   F     L  L L+    S  
Sbjct: 15  AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSM-ANLTQLFHMDFSSNHFSGHIP--SLHKSRN 117
            P +  NL NL  + +R       IP  +   L+ L  +D S N     +         N
Sbjct: 72  EPGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYN 129

Query: 118 LKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLSNNQ 176
           LK L++  N+L       F   L +L  + L   +L  SIP      L  L  L L +  
Sbjct: 130 LKSLEVGDNDLVYISHRAFS-GLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLN 187

Query: 177 FENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSK 236
               + + S      L  L++S       +         NL +L ++    + +   +  
Sbjct: 188 INA-IRDYSFKRLYRLKVLEISHWPYLDTMT-PNCLYGLNLTSLSITHCNLTAVPYLA-- 243

Query: 237 PRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEP--YSI 294
                 +++   L  L++S N I   I   +       L  + L    L  ++      +
Sbjct: 244 ------VRHLVYLRFLNLSYNPI-STIEGSMLH-ELLRLQEIQLVGGQLAVVEPYAFRGL 295

Query: 295 SSIRLLDLHSNQLR 308
           + +R+L++  NQL 
Sbjct: 296 NYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  101 bits (253), Expect = 8e-23
 Identities = 64/353 (18%), Positives = 122/353 (34%), Gaps = 32/353 (9%)

Query: 295 SSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVG 354
           +  R +  H  +       + T T  +D   N    +  D        E      N +  
Sbjct: 11  AQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 355 VIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRN 414
           V P +       + L L +N L   IP  +     + L  L++  N +   L D +F   
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGL-SNLTKLDISENKIV-ILLDYMFQDL 127

Query: 415 CGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNN 474
             L+ L++G N L  +  ++ +  N L+ L L+  +++      L +   L VL L+   
Sbjct: 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL- 186

Query: 475 FSGHISCPRNNVSWPL--LQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRY 532
              +I+  R+     L  L++++++   +   ++   L             G  L  L  
Sbjct: 187 ---NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL------------YGLNLTSLS- 230

Query: 533 VISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMS 592
            I+      V            +  +  +   ++ S N         +     L  + + 
Sbjct: 231 -ITHCNLTAVP--------YLAVRHLVYL-RFLNLSYNPISTIEGSMLHELLRLQEIQLV 280

Query: 593 HNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 645
              L    P +F  L  +  L++S N L+    +   S+  L  L L  N L 
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (252), Expect = 1e-22
 Identities = 66/314 (21%), Positives = 114/314 (36%), Gaps = 46/314 (14%)

Query: 1   TLDLSECGLQGKFPEKILQ-VPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSG 59
            L+L+E  +           +  L TL L  N+L    L  F   S+L  L +S      
Sbjct: 60  ELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI 118

Query: 60  TLPDSIGNLENLTWVEVRRCNFTGPIPPSM-ANLTQLFHMDFSSNHFSGHIP--SLHKSR 116
            L     +L NL  +EV   +    I     + L  L  +     + +  IP  +L    
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLH 176

Query: 117 NLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQ 176
            L  L L   N++  I    +++L  L ++ +SH     ++  +     NL +L +++  
Sbjct: 177 GLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235

Query: 177 FENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSK 236
                                        VP   +  L  L  L+LS N  S +  +   
Sbjct: 236 LTA--------------------------VPYLAVRHLVYLRFLNLSYNPISTIEGSM-- 267

Query: 237 PRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEP--YSI 294
                 L    +L  + +   Q+   +  + +  G   L  LN+S N L +L+E   +S+
Sbjct: 268 ------LHELLRLQEIQLVGGQL-AVVEPYAFR-GLNYLRVLNVSGNQLTTLEESVFHSV 319

Query: 295 SSIRLLDLHSNQLR 308
            ++  L L SN L 
Sbjct: 320 GNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 96.3 bits (240), Expect = 3e-21
 Identities = 63/331 (19%), Positives = 114/331 (34%), Gaps = 33/331 (9%)

Query: 315 STNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNN 374
           S     V      F  +P  I    +ET       N +  +  +      + + L+L+ N
Sbjct: 10  SAQDRAVLCHRKRFVAVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN 66

Query: 375 NLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKS 434
            +S  +           L  L L  N L   +   +F     L  LD+  N++  ++   
Sbjct: 67  IVS-AVEPGAFNNL-FNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYM 123

Query: 435 LANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIV 494
             +   L+ L++ +N +           +SL+ L L+  N +  I           L ++
Sbjct: 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIP-TEALSHLHGLIVL 181

Query: 495 DLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETM 554
            L     +  +       +             LK L   IS   +        +  +   
Sbjct: 182 RLRHLNIN-AIRDYSFKRL-----------YRLKVLE--ISHWPY--------LDTMTPN 219

Query: 555 LLKVPNIFTSIDFSSNNFEGPIPEEM-GRFKSLYALNMSHNALTGSIPSSFGNLKQIESL 613
            L   N+ TS+  +  N    +P         L  LN+S+N ++    S    L +++ +
Sbjct: 220 CLYGLNL-TSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEI 277

Query: 614 DLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
            L    L+   P     LN+L VLN+S N L
Sbjct: 278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 46/235 (19%), Positives = 76/235 (32%), Gaps = 53/235 (22%)

Query: 417 LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS 476
            ++LDLG N+++ +     A+   L+ L+L  N +S   P    N  +L+ L L+SN   
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-- 91

Query: 477 GHISCPRNNVSWPL--LQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVI 534
             +      V   L  L  +D++ NK    L       +             LK L   +
Sbjct: 92  --LKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDL-----------YNLKSLE--V 135

Query: 535 SSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHN 594
             N    +                         S   F G          SL  L +   
Sbjct: 136 GDNDLVYI-------------------------SHRAFSG--------LNSLEQLTLEKC 162

Query: 595 ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 649
            LT     +  +L  +  L L   N++         L  L VL +S+   +  + 
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  112 bits (281), Expect = 3e-26
 Identities = 91/489 (18%), Positives = 180/489 (36%), Gaps = 26/489 (5%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            +D S+ GL    P+ +        L++S+N + +    +    S LR LI+S       
Sbjct: 4   LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFS--GHIPSLHKSRNL 118
                   + L ++++        I         L H+D S N F              L
Sbjct: 61  DISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 119 KYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLP--NLETLWLSNNQ 176
           K+L LS  +L            ++  L++L         P  L      +L  ++ +N +
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177

Query: 177 FENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSK 236
           F   L       +++    ++     +      +    +      LS+   + +    + 
Sbjct: 178 FHFILDVSVKTVANLEL-SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236

Query: 237 PRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYS--- 293
              I  L   + +    ISN ++ G++    ++    +L  L++   +      P S   
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296

Query: 294 --ISSIRLLDLHSNQLRG---NIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAA 348
              S++ + +   +  R      P   +   ++D+SNN  T    +    ++E E     
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356

Query: 349 NNSL--VGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTL 406
            N L  +  I E   +    Q LD+S N++S             +L  LN+  N L  T+
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC-SWTKSLLSLNMSSNILTDTI 415

Query: 407 SDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQ 466
              + PR   +++LDL  N+++  +PK +     LQ L++ +N +           +SLQ
Sbjct: 416 FRCLPPR---IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471

Query: 467 VLVLQSNNF 475
            + L +N +
Sbjct: 472 KIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  104 bits (262), Expect = 6e-24
 Identities = 92/510 (18%), Positives = 174/510 (34%), Gaps = 53/510 (10%)

Query: 115 SRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLS 173
           S+    L++S N +S   +S     L  L ++++SHN +   +  S+F     LE L LS
Sbjct: 20  SQKTTILNISQNYISELWTSDIL-SLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLS 77

Query: 174 NNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLA 233
           +N+    L +IS   +  L  LDLS N  +          +  L  L LS+    +  + 
Sbjct: 78  HNK----LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 234 SSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYS 293
                  PI         L +       E P  + +    +L+ +  ++     + +   
Sbjct: 134 -------PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186

Query: 294 ISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLV 353
            +   L   +   +  +       +       N             +   +         
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246

Query: 354 GVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGR--NNLNGTLSDTIF 411
             +              +SN  L G +       S T+L  L++ +  +++ G     I+
Sbjct: 247 TTVWY----------FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296

Query: 412 PRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQ 471
                + I +   +  + V     +  +    LD  NN ++D      G+ + L+ L+LQ
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356

Query: 472 SNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLR 531
            N                 LQ +D++ N  S    +                 S  K L 
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC--------------SWTKSLL 402

Query: 532 YV-ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALN 590
            + +SSN       T T+       +KV      +D  SN  +  IP+++ + ++L  LN
Sbjct: 403 SLNMSSNIL-----TDTIFRCLPPRIKV------LDLHSNKIKS-IPKQVVKLEALQELN 450

Query: 591 MSHNALTGSIPSSFGNLKQIESLDLSMNNL 620
           ++ N L       F  L  ++ + L  N  
Sbjct: 451 VASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 77.2 bits (190), Expect = 5e-15
 Identities = 58/378 (15%), Positives = 121/378 (32%), Gaps = 25/378 (6%)

Query: 274 NLNFLNLSHNLLVSLQEPYSI-SSIRLLDLHSNQLRGNIPHMS----TNTSYVDYSNNHF 328
           +   ++ S N L+ +  P  +     +L++  N +   +        +    +  S+N  
Sbjct: 1   SEFLVDRSKNGLIHV--PKDLSQKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRI 57

Query: 329 TFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQS 388
            ++   +  F  E EY   ++N LV +           + LDLS N     +P C    +
Sbjct: 58  QYLDISVFKFNQELEYLDLSHNKLVKISCHPTVN---LKHLDLSFNAFD-ALPICKEFGN 113

Query: 389 ETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNM--LQVLDL 446
            + L  L L   +L  +    I   N    +L LG    +   P+ L + N   L ++  
Sbjct: 114 MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173

Query: 447 KNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLS 506
            N          +   ++L++  ++        S   + ++              +   +
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 507 QKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSID 566
               + + +++       + + +    IS+ +              T L       +   
Sbjct: 234 WNSFIRILQLV-----WHTTVWYFS--ISNVKLQGQLDFRDFDYSGTSLKA----LSIHQ 282

Query: 567 FSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPA 626
             S+ F  P       F ++   N + +            +     LD S N L+  +  
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342

Query: 627 QLASLNFLSVLNLSYNNL 644
               L  L  L L  N L
Sbjct: 343 NCGHLTELETLILQMNQL 360

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (271), Expect = 4e-26
 Identities = 50/296 (16%), Positives = 105/296 (35%), Gaps = 26/296 (8%)

Query: 14  PEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTW 73
            E        +   ++++ L Q          +++ L LSG   S      +     L  
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 74  VEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGIS 133
           + +            + +L+ L  +D ++N+       L    +++ L  + NN+S  +S
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ----ELLVGPSIETLHAANNNIS-RVS 115

Query: 134 STFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLF 193
            +  +   N+    L++N +             ++ L L  N+ +         SS  L 
Sbjct: 116 CSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 194 DLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLD 253
            L+L  N +     +        L TLDLSSNK + +          P  ++ + ++ + 
Sbjct: 173 HLNLQYNFIYD---VKGQVVFAKLKTLDLSSNKLAFMG---------PEFQSAAGVTWIS 220

Query: 254 ISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSI-RLLDLHSNQLR 308
           + NN++   I   +    + NL   +L  N           S   R+  +    ++
Sbjct: 221 LRNNKL-VLIEKALR--FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.5 bits (246), Expect = 8e-23
 Identities = 49/336 (14%), Positives = 107/336 (31%), Gaps = 40/336 (11%)

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSG-HIPSLHKSRNLK 119
           + +   N       +V   +    +     +   +  +D S N  S      L     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 120 YLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFEN 179
            L+LS N L   +       L  L+   L++N +     + L + P++ETL  +N    N
Sbjct: 62  LLNLSSNVLYETLDLESLSTLRTLD---LNNNYV-----QELLVGPSIETLHAAN----N 109

Query: 180 QLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFS----------- 228
            +  +S        ++ L+ N++   +          +  LDL  N+             
Sbjct: 110 NISRVSCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 229 ----RLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNL 284
                L L  +    +      ++L  LD+S+N++   +           + +++L +N 
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQ--SAAGVTWISLRNNK 225

Query: 285 LVSLQEP-YSISSIRLLDLHSNQLRGNIPH--MSTNTSYVDYSNNHFTFIPADIGNFMSE 341
           LV +++      ++   DL  N           S N      +      +        + 
Sbjct: 226 LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT- 284

Query: 342 TEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLS 377
                         +P      +    + L +++  
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRL----IALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.5 bits (246), Expect = 9e-23
 Identities = 52/345 (15%), Positives = 118/345 (34%), Gaps = 41/345 (11%)

Query: 138 EQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDL 197
           +      +  ++ +SL  ++        N++ L LS N    Q+        + L  L+L
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNL 65

Query: 198 SGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNN 257
           S N L   + +     L  L TLDL++N              + +  +   +  L  +NN
Sbjct: 66  SSNVLYETLDLE---SLSTLRTLDLNNNYVQE----------LLVGPS---IETLHAANN 109

Query: 258 QIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEP--YSISSIRLLDLHSNQLR----GNI 311
            I   +     +        + L++N +  L++      S ++ LDL  N++       +
Sbjct: 110 NI-SRVSCSRGQ----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 312 PHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDL 371
              S    +++   N    +   +    ++ +    ++N L   +            + L
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 372 SNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVV 431
            NN L   I   L  +    L   +L  N  +       F +N   ++  +    ++ + 
Sbjct: 222 RNNKLV-LIEKAL--RFSQNLEHFDLRGNGFHCGTLRDFFSKN--QRVQTVAKQTVKKLT 276

Query: 432 PKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS 476
            ++   C +  +         D     L    + +++ L  ++  
Sbjct: 277 GQNEEECTVPTLGHYGAYCCED-----LPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.8 bits (239), Expect = 7e-22
 Identities = 50/308 (16%), Positives = 95/308 (30%), Gaps = 31/308 (10%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            LDLS   L       +     LE L+LS N L      +    S+LR L L+       
Sbjct: 38  ELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ-- 93

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLK 119
               +    ++  +     N +            +     ++N  +            ++
Sbjct: 94  ---ELLVGPSIETLHAANNNISRVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQ 147

Query: 120 YLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFEN 179
           YLDL  N +     +        L  + L +N +   +   +     L+TL LS+N+   
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAF 205

Query: 180 QLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRV 239
             PE  + +   +  + L  N+L   +    +   +NL   DL  N F    L       
Sbjct: 206 MGPEFQSAAG--VTWISLRNNKLVL-IE-KALRFSQNLEHFDLRGNGFHCGTLRD----- 256

Query: 240 IPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRL 299
                   ++  +     +        +            L H      ++  +  + RL
Sbjct: 257 --FFSKNQRVQTVAKQTVKK-------LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

Query: 300 LDLHSNQL 307
           + L  +  
Sbjct: 308 IALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 54/278 (19%), Positives = 103/278 (37%), Gaps = 41/278 (14%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
           ++  +++++L   + +    QS   +  L+L  N L+  +S         L++L+L  N 
Sbjct: 13  KIEKVTDSSLKQALASLR--QSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNV 69

Query: 427 LQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNV 486
           L       L + + L+ LDL NN++ +     L    S++ L   +NN S  +SC     
Sbjct: 70  LYET--LDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCS---- 117

Query: 487 SWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTV 546
                + + LA+NK +  L                   S +++L   +  N+   V    
Sbjct: 118 RGQGKKNIYLANNKIT-MLRDLDEGCR-----------SRVQYLD--LKLNEIDTVNFAE 163

Query: 547 TVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGN 606
                +T+          ++   N     +  ++  F  L  L++S N L   +   F +
Sbjct: 164 LAASSDTL--------EHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQS 212

Query: 607 LKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
              +  + L  N L   I   L     L   +L  N  
Sbjct: 213 AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.5 bits (194), Expect = 5e-16
 Identities = 44/261 (16%), Positives = 97/261 (37%), Gaps = 40/261 (15%)

Query: 385 IAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVL 444
           I Q+     +  +  ++L      ++      ++ LDL GN L  +    LA    L++L
Sbjct: 5   IKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 445 DLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGR 504
           +L +N + +     L + S+L+ L L +N     +    +      ++ +  A+N  S  
Sbjct: 64  NLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGPS------IETLHAANNNIS-- 112

Query: 505 LSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTS 564
                              G   K++   +++N+   +         +        +   
Sbjct: 113 -------------RVSCSRGQGKKNIY--LANNKITMLR--------DLDEGCRSRV-QY 148

Query: 565 IDFSSNNFEG-PIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK 623
           +D   N  +     E      +L  LN+ +N +   +        ++++LDLS N L+  
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-F 205

Query: 624 IPAQLASLNFLSVLNLSYNNL 644
           +  +  S   ++ ++L  N L
Sbjct: 206 MGPEFQSAAGVTWISLRNNKL 226

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 21/69 (30%), Positives = 31/69 (44%)

Query: 576 IPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLS 635
           I E            ++ ++L  ++ S   +   ++ LDLS N LS    A LA    L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 636 VLNLSYNNL 644
           +LNLS N L
Sbjct: 62  LLNLSSNVL 70

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 9/46 (19%), Positives = 20/46 (43%)

Query: 599 SIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
           +I     N  + +   ++ ++L   + +   S   +  L+LS N L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL 46

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  111 bits (278), Expect = 9e-26
 Identities = 65/360 (18%), Positives = 117/360 (32%), Gaps = 64/360 (17%)

Query: 163 LLPNLETLWLSNNQFENQLPEISNVSSSVLFDL---DLSGNRLEGPVPISIIFELRNLYT 219
           +LP      LS N F N +        S         L G      V +     +     
Sbjct: 4   MLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSE 63

Query: 220 LDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLN 279
           L L+    S L      P  +P      Q++ L+I+ N +   +P         +L +L+
Sbjct: 64  LQLNRLNLSSL------PDNLP-----PQITVLEITQNAL-ISLPELP-----ASLEYLD 106

Query: 280 LSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFM 339
              N L +L  P   +S++ LD+ +NQL   +P +     Y++  NN  T +P    +  
Sbjct: 107 ACDNRLSTL--PELPASLKHLDVDNNQLT-MLPELPALLEYINADNNQLTMLPELPTSL- 162

Query: 340 SETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGR 399
                                      +VL + NN L+  +P         +L  L++  
Sbjct: 163 ---------------------------EVLSVRNNQLT-FLPELP-----ESLEALDVST 189

Query: 400 NNLNGTLSDTIFPRNCGLQ----ILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNF 455
           N L  +L      RN   +          N++   +P+++ + +    + L++N +S   
Sbjct: 190 NLLE-SLPAVPV-RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI 246

Query: 456 PCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEE 515
              L   ++          FS                +           +SQ W     E
Sbjct: 247 RESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHE 306

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.0 bits (210), Expect = 2e-17
 Identities = 62/343 (18%), Positives = 109/343 (31%), Gaps = 60/343 (17%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQG-SLPNFPKNSSLRNLILSGTGFSG 59
           + +     + G + +        E   L      +  SL      +    L L+    S 
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS- 72

Query: 60  TLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLK 119
           +LPD++                          +T L   + + N     +P L    +L+
Sbjct: 73  SLPDNLPP-----------------------QITVL---EITQNALI-SLPELPA--SLE 103

Query: 120 YLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFEN 179
           YLD   N L     ST  E   +L  + + +N L   +P    L   LE +   NNQ   
Sbjct: 104 YLDACDNRL-----STLPELPASLKHLDVDNNQLT-MLPE---LPALLEYINADNNQLTM 154

Query: 180 QLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRV 239
                ++     L  L +  N+L             +L  LD+S+N    L      P V
Sbjct: 155 LPELPTS-----LEVLSVRNNQLTFLPE-----LPESLEALDVSTNLLESL------PAV 198

Query: 240 IPILKN-QSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIR 298
                + +          N+I   IP  I  +       + L  N L S           
Sbjct: 199 PVRNHHSEETEIFFRCRENRIT-HIPENI--LSLDPTCTIILEDNPLSSRIRESLSQQTA 255

Query: 299 LLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSE 341
             D H  ++  ++     NT +   ++    + P +  + +S+
Sbjct: 256 QPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQ 298

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.8 bits (173), Expect = 6e-13
 Identities = 56/281 (19%), Positives = 103/281 (36%), Gaps = 59/281 (20%)

Query: 368 VLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQL 427
           +   + N     +  CLI Q       L L R NL+ +L D + P+   + +L++  N L
Sbjct: 41  LPGENRNEAVSLLKECLINQ----FSELQLNRLNLS-SLPDNLPPQ---ITVLEITQNAL 92

Query: 428 QGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVS 487
              +P+  A+   L+ LD  +N +S   P    +   L+ L + +N  +     P     
Sbjct: 93  I-SLPELPAS---LEYLDACDNRLST-LPELPAS---LKHLDVDNNQLT---MLPE---L 138

Query: 488 WPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVT 547
             LL+ ++  +N+ +  L +                 + L+ L   + +NQ         
Sbjct: 139 PALLEYINADNNQLT-MLPELP---------------TSLEVLS--VRNNQL-------- 172

Query: 548 VKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSL----YALNMSHNALTGSIPSS 603
                T L ++P    ++D S+N  E  +P    R               N +T  IP +
Sbjct: 173 -----TFLPELPESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPEN 225

Query: 604 FGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
             +L    ++ L  N LS +I   L+        +      
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.8 bits (155), Expect = 9e-11
 Identities = 56/317 (17%), Positives = 103/317 (32%), Gaps = 59/317 (18%)

Query: 308 RGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNS---LVGVIPESVCKGI 364
             N   +S N+ Y     N  +   AD  +   + E       +    V ++ E +    
Sbjct: 7   INNNFSLSQNSFY-----NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61

Query: 365 YFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGG 424
               L L+  NLS ++P  L  Q    + VL + +N L  +L +        L+ LD   
Sbjct: 62  --SELQLNRLNLS-SLPDNLPPQ----ITVLEITQNAL-ISLPELP----ASLEYLDACD 109

Query: 425 NQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRN 484
           N+L   +P+  A+   L+ LD+ NN ++   P        L+ +   +N  +     P +
Sbjct: 110 NRLS-TLPELPAS---LKHLDVDNNQLT-MLPELPAL---LEYINADNNQLTMLPELPTS 161

Query: 485 NVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGV 544
                 L+++ + +N+         L  + E+          L+ L   +S+N    +  
Sbjct: 162 ------LEVLSVRNNQ---------LTFLPELP-------ESLEALD--VSTNLLESLPA 197

Query: 545 TVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSF 604
                                    N     IPE +        + +  N L+  I  S 
Sbjct: 198 VPV------RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESL 250

Query: 605 GNLKQIESLDLSMNNLS 621
                           S
Sbjct: 251 SQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 14/147 (9%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKN-----SSLRNLILSGT 55
            L +    L    PE      +LE LD+S N L   SLP  P        +         
Sbjct: 164 VLSVRNNQLT-FLPELP---ESLEALDVSTNLL--ESLPAVPVRNHHSEETEIFFRCREN 217

Query: 56  GFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKS 115
             +  +P++I +L+    + +     +  I  S++  T          +FS      +  
Sbjct: 218 RIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

Query: 116 RNLKYLDL--SFNNLSGGISSTFWEQL 140
                  +   F        S  W   
Sbjct: 277 HRPLADAVTAWFPENKQSDVSQIWHAF 303

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  110 bits (277), Expect = 1e-25
 Identities = 83/477 (17%), Positives = 159/477 (33%), Gaps = 88/477 (18%)

Query: 40  NFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMD 99
           N   +    ++ +               L N   V  +           + +  Q+  ++
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81

Query: 100 FSSNHFSGHIP--SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSI 157
            +       I   +   +  ++ L + FN +   +    ++ +  L +++L  N L+ S+
Sbjct: 82  LNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SL 138

Query: 158 PRSLFL-LPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRN 216
           PR +F   P L TL +SNN  E ++ + +  +++ L +L LS NRL   V +S+   + +
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH-VDLSL---IPS 193

Query: 217 LYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLN 276
           L+  ++S N  S L                  +  LD S+N I   +   +    N  L 
Sbjct: 194 LFHANVSYNLLSTLA-------------IPIAVEELDASHNSI-NVVRGPV----NVELT 235

Query: 277 FLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIG 336
            L L HN L       +   +  +DL                     S N    I     
Sbjct: 236 ILKLQHNNLTDTAWLLNYPGLVEVDL---------------------SYNELEKIMYHP- 273

Query: 337 NFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLN 396
                    F     L              + L +SNN L   +      Q   TL VL+
Sbjct: 274 ---------FVKMQRL--------------ERLYISNNRLV-ALNLYG--QPIPTLKVLD 307

Query: 397 LGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHIS-DNF 455
           L  N+L   +       +  L+ L L  N +  +   +      L+ L L +N    ++ 
Sbjct: 308 LSHNHLL-HVERNQPQFD-RLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWDCNSL 362

Query: 456 PCWLGNASSLQVLVLQSN-----NFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQ 507
                N +   V     +          + C  ++  +    +  +A      ++ +
Sbjct: 363 RALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQR 419

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  102 bits (255), Expect = 6e-23
 Identities = 59/312 (18%), Positives = 116/312 (37%), Gaps = 33/312 (10%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            +      ++      +     +E L+L++ Q+ +     F    +++ L +        
Sbjct: 55  IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 114

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSM-ANLTQLFHMDFSSNHFSGHIPS--LHKSRN 117
            P    N+  LT + + R + +  +P  +  N  +L  +  S+N+    I       + +
Sbjct: 115 PPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTS 172

Query: 118 LKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQF 177
           L+ L LS N L+    S       +L    +S+N L+     +L +   +E L  S+   
Sbjct: 173 LQNLQLSSNRLTHVDLSLIP----SLFHANVSYNLLS-----TLAIPIAVEELDASH--- 220

Query: 178 ENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKP 237
            N +  +    +  L  L L  N L      + +     L  +DLS N+  ++       
Sbjct: 221 -NSINVVRGPVNVELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNELEKIMYHP--- 273

Query: 238 RVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQ-EPYSISS 296
                     +L  L ISNN++   +  +        L  L+LSHN L+ ++        
Sbjct: 274 -----FVKMQRLERLYISNNRL-VALNLYGQ--PIPTLKVLDLSHNHLLHVERNQPQFDR 325

Query: 297 IRLLDLHSNQLR 308
           +  L L  N + 
Sbjct: 326 LENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 97.3 bits (242), Expect = 2e-21
 Identities = 70/376 (18%), Positives = 129/376 (34%), Gaps = 53/376 (14%)

Query: 279 NLSHNLLVSLQEPYSISS-----IRLLDLHSNQLRGNIPHMS-----TNTSYVDYSNNHF 328
              +N+     E   I S         D+H +    ++          N   V + N+  
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 329 TFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQS 388
             +PA + +   + E     +  +  +   +       Q L +  N +   +P  +    
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNV 122

Query: 389 ETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKN 448
              L VL L RN+L+ +L   IF     L  L +  N L+ +   +      LQ L L +
Sbjct: 123 -PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180

Query: 449 NHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQK 508
           N ++      L    SL    +  N  S  ++ P        ++ +D + N  +      
Sbjct: 181 NRLTH-VD--LSLIPSLFHANVSYNLLS-TLAIPIA------VEELDASHNSIN------ 224

Query: 509 WLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFS 568
                    V       EL  L+  +  N   +             LL  P +   +D S
Sbjct: 225 ---------VVRGPVNVELTILK--LQHNNLTDTAW----------LLNYPGL-VEVDLS 262

Query: 569 SNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQL 628
            N  E  +     + + L  L +S+N L  ++      +  ++ LDLS N+L   +    
Sbjct: 263 YNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 320

Query: 629 ASLNFLSVLNLSYNNL 644
              + L  L L +N++
Sbjct: 321 PQFDRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 82.3 bits (203), Expect = 1e-16
 Identities = 50/229 (21%), Positives = 86/229 (37%), Gaps = 22/229 (9%)

Query: 1   TLDLSECGLQGKFPEKILQ-VPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSG 59
           TL +S   L+ +  +   Q   +L+ L LS N+L    L   P   SL +  +S    S 
Sbjct: 151 TLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP---SLFHANVSYNLLS- 205

Query: 60  TLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLK 119
               ++     +  ++    +      P    LT L       N+ +     L     L 
Sbjct: 206 ----TLAIPIAVEELDASHNSINVVRGPVNVELTIL---KLQHNNLT-DTAWLLNYPGLV 257

Query: 120 YLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFEN 179
            +DLS+N L   I    + ++  L  + +S+N L  ++      +P L+ L LS+N   +
Sbjct: 258 EVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH 315

Query: 180 QLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFS 228
                       L +L L  N +   + +S       L  L LS N + 
Sbjct: 316 VERNQPQFDR--LENLYLDHNSIV-TLKLST---HHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.6 bits (139), Expect = 7e-09
 Identities = 43/290 (14%), Positives = 83/290 (28%), Gaps = 12/290 (4%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            LD S   +       +     L  L L  N L             L  + LS       
Sbjct: 215 ELDASHNSIN-VVRGPVNV--ELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKI 269

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
           +      ++ L  + +        +      +  L  +D S NH      +  +   L+ 
Sbjct: 270 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLEN 328

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           L L  N++   +  +    L NL    LSHN  + +  R+LF   N+    + +     +
Sbjct: 329 LYLDHNSIV-TLKLSTHHTLKNLT---LSHNDWDCNSLRALF--RNVARPAVDDADQHCK 382

Query: 181 LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVI 240
           +                  +RL   + ++ + E         S+        + S     
Sbjct: 383 IDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQ 442

Query: 241 PILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQE 290
                      L+   N++  E+     E          L   +  +L+ 
Sbjct: 443 QGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRR 492

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 99.7 bits (249), Expect = 3e-23
 Identities = 61/264 (23%), Positives = 93/264 (35%), Gaps = 19/264 (7%)

Query: 24  ETLDLSENQLLQGSLP-NFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFT 82
             +  +   L   S+P   P  SS   L L               L  LT + +     +
Sbjct: 10  TEIRCNSKGLT--SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 83  GPIPPSMA--NLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQL 140
                S +    T L ++D S N       +      L++LD   +NL      + +  L
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 141 VNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSG 199
            NL  + +SH          +F  L +LE L ++ N F+             L  LDLS 
Sbjct: 126 RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 200 NRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQI 259
            +LE  +  +    L +L  L++S N F  L             K  + L  LD S N I
Sbjct: 185 CQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFP--------YKCLNSLQVLDYSLNHI 235

Query: 260 PGEIPNWIWEVGNGNLNFLNLSHN 283
                    +    +L FLNL+ N
Sbjct: 236 M-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.5 bits (207), Expect = 9e-18
 Identities = 58/311 (18%), Positives = 108/311 (34%), Gaps = 64/311 (20%)

Query: 195 LDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDI 254
           +  +   L   VP  I     +   L+L SNK   L                +QL+ L +
Sbjct: 12  IRCNSKGLTS-VPTGI---PSSATRLELESNKLQSLPHGV--------FDKLTQLTKLSL 59

Query: 255 SNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEP-YSISSIRLLDLHSNQLRGNIPH 313
           S+N +  +      + G  +L +L+LS N ++++      +  +  LD   + L+  +  
Sbjct: 60  SSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSE 118

Query: 314 MSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSN 373
            S                              F +  +L                LD+S+
Sbjct: 119 FSV-----------------------------FLSLRNL--------------IYLDISH 135

Query: 374 NNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPK 433
            +        +     ++L VL +  N+        IF     L  LDL   QL+ + P 
Sbjct: 136 THTR-VAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193

Query: 434 SLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVS--WPLL 491
           +  + + LQVL++ +N+            +SLQVL    N+     +  +  +      L
Sbjct: 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM---TSKKQELQHFPSSL 250

Query: 492 QIVDLASNKFS 502
             ++L  N F+
Sbjct: 251 AFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 44/233 (18%), Positives = 83/233 (35%), Gaps = 30/233 (12%)

Query: 416 GLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPC--WLGNASSLQVLVLQSN 473
               L+L  N+LQ +          L  L L +N +S    C       +SL+ L L  N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 474 NFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV 533
                 +   N +    L+ +D   +                           L++L Y+
Sbjct: 89  GVI---TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF--------------LSLRNLIYL 131

Query: 534 -ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEM-GRFKSLYALNM 591
            IS                  +   + ++   +  + N+F+     ++    ++L  L++
Sbjct: 132 DISHTHTRVAF--------NGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 592 SHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
           S   L    P++F +L  ++ L++S NN           LN L VL+ S N++
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 59/283 (20%), Positives = 103/283 (36%), Gaps = 37/283 (13%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
             +  ++  L+ ++P  +     ++   L L  N L  +L   +F +   L  L L  N 
Sbjct: 10  TEIRCNSKGLT-SVPTGI----PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNG 63

Query: 427 L--QGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRN 484
           L  +G   +S      L+ LDL  N +             L+ L  Q +N          
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK---QMSEF 119

Query: 485 NVSWPL--LQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEV 542
           +V   L  L  +D++               +           S L+ L+  ++ N F E 
Sbjct: 120 SVFLSLRNLIYLDISHTHTR-VAFNGIFNGL-----------SSLEVLK--MAGNSFQEN 165

Query: 543 GVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPS 602
            +         +  ++ N+ T +D S    E   P       SL  LNMSHN        
Sbjct: 166 FL-------PDIFTELRNL-TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217

Query: 603 SFGNLKQIESLDLSMNNLSGKIPAQLASL-NFLSVLNLSYNNL 644
            +  L  ++ LD S+N++      +L    + L+ LNL+ N+ 
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 9/160 (5%)

Query: 1   TLDLSECGLQGKFPEKILQ-VPTLETLDLSENQLLQGSLPN--FPKNSSLRNLILSGTGF 57
            LD     L+      +   +  L  LD+S          N  F   SSL  L ++G  F
Sbjct: 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT--RVAFNGIFNGLSSLEVLKMAGNSF 162

Query: 58  SGTLPDSI-GNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPS--LHK 114
                  I   L NLT++++ +C      P +  +L+ L  ++ S N+F   + +     
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKC 221

Query: 115 SRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLN 154
             +L+ LD S N++             +L  + L+ N   
Sbjct: 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 10/127 (7%)

Query: 525 SELKHLRYV-ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRF 583
            +L  L  + +SSN     G                ++   +D S N     +       
Sbjct: 49  DKLTQLTKLSLSSNGLSFKGCCSQS------DFGTTSL-KYLDLSFNGVIT-MSSNFLGL 100

Query: 584 KSLYALNMSHNALTGSIPSS-FGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 642
           + L  L+  H+ L      S F +L+ +  LD+S  +           L+ L VL ++ N
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160

Query: 643 NLVGKIP 649
           +      
Sbjct: 161 SFQENFL 167

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.9 bits (247), Expect = 9e-23
 Identities = 45/327 (13%), Positives = 101/327 (30%), Gaps = 22/327 (6%)

Query: 59  GTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNL 118
           G+      +      +  +      P    ++   + ++ D +  H +    + +   N 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN---NP 58

Query: 119 KYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFE 178
           +    +   L                 + L    L    P   F L +L+ + +      
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM 117

Query: 179 NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSS-NKFSRLRLASSKP 237
                +   +   L  L L+ N L   +P S I  L  L  L + +  + + L    +  
Sbjct: 118 ELPDTMQQFAG--LETLTLARNPLRA-LPAS-IASLNRLRELSIRACPELTELPEPLAST 173

Query: 238 RVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSI--- 294
                 +    L  L +    I   +P  I  +   NL  L + ++ L +L    +I   
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANL--QNLKSLKIRNSPLSAL--GPAIHHL 228

Query: 295 SSIRLLDLHSNQLRGNIP----HMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANN 350
             +  LDL       N P      +     +    ++   +P DI   +++ E       
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGC 287

Query: 351 SLVGVIPESVCKGIYFQVLDLSNNNLS 377
             +  +P  + +     ++ +  +  +
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.1 bits (245), Expect = 2e-22
 Identities = 55/319 (17%), Positives = 94/319 (29%), Gaps = 49/319 (15%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQG---------------SLPNFPKN- 44
            L          + + + Q       D +                      +L       
Sbjct: 16  NLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLL 75

Query: 45  -----SSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMD 99
                     L L         PD    L +L  + +        +P +M     L  + 
Sbjct: 76  EDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLT 133

Query: 100 FSSNHFSGHIP-SLHKSRNLKYLDLSFNN--------LSGGISSTFWEQLVNLNLVLLSH 150
            + N     +P S+     L+ L +            L+   +S   + LVNL  + L  
Sbjct: 134 LARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192

Query: 151 NSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISI 210
             +  S+P S+  L NL++L + N+      P I ++    L +LDL G       P   
Sbjct: 193 TGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK--LEELDLRGCTALRNYPPI- 248

Query: 211 IFELRNLYTLDLSS-NKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWE 269
                 L  L L   +    L      P  I  L     L  LD+        +P+ I +
Sbjct: 249 FGGRAPLKRLILKDCSNLLTL------PLDIHRLTQ---LEKLDLRGCVNLSRLPSLIAQ 299

Query: 270 VGNGNLNFLNLSHNLLVSL 288
           +       + +  +L   L
Sbjct: 300 L--PANCIILVPPHLQAQL 316

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.1 bits (193), Expect = 8e-16
 Identities = 43/297 (14%), Positives = 82/297 (27%), Gaps = 61/297 (20%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
           Q+   +   L       L   ++     L L    L     D  F  +  LQ + +    
Sbjct: 59  QIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSH-LQHMTIDAAG 115

Query: 427 LQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS-------GHI 479
           L   +P ++     L+ L L  N +    P  + + + L+ L +++              
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 480 SCPRNNVSWPLLQIVDLASNKFS------GRLSQKWLLTMEEMMVAETKSGSELKHLRYV 533
                +     LQ + L              L                     LK L+  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQN-------------------LKSLK-- 212

Query: 534 ISSNQFYEVGVTVTVKGVETMLLKVPNIF------TSIDFSSNNFEGPIPEEMGRFKSLY 587
           I ++                 L  +            +D          P   G    L 
Sbjct: 213 IRNSP----------------LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 588 ALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
            L +   +   ++P     L Q+E LDL       ++P+ +A L    ++ +  +  
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.9 bits (177), Expect = 9e-14
 Identities = 40/287 (13%), Positives = 82/287 (28%), Gaps = 38/287 (13%)

Query: 371 LSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGV 430
             N + +    A   A S     +       L  T          G   L+L    L   
Sbjct: 38  HYNADRNRWHSAWRQANS-NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-Q 95

Query: 431 VPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPL 490
            P      + LQ + +    +    P  +   + L+ L L  N      + P +  S   
Sbjct: 96  FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR---ALPASIASLNR 151

Query: 491 LQIVDLASNKFSGRLSQKWLLTMEEM-MVAETKSGSELKHLRYV-ISSNQFYEVGVTVTV 548
           L+ + + +      L        E +     +     L +L+ + +              
Sbjct: 152 LRELSIRACPELTELP-------EPLASTDASGEHQGLVNLQSLRLEWTG---------- 194

Query: 549 KGVETMLLKVPNIF------TSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPS 602
                 +  +P          S+   ++     +   +     L  L++       + P 
Sbjct: 195 ------IRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPP 247

Query: 603 SFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 649
            FG    ++ L L   +    +P  +  L  L  L+L     + ++P
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 45/292 (15%), Positives = 84/292 (28%), Gaps = 69/292 (23%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVL-NLGRNNLNGTLSDTIFPRNCGLQILDLGGN 425
           + L    +                 L         + N   S      +   QI    G 
Sbjct: 15  ENLYFQGSTALRPYH--------DVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 426 QLQGVVPKSLANCNM--LQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPR 483
            L+      L +        L+L++  +   FP      S LQ + + +         P 
Sbjct: 67  ALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM---ELPD 121

Query: 484 NNVSWPLLQIVDLASNKFS------GRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSN 537
               +  L+ + LA N           L++                   L+ L  + +  
Sbjct: 122 TMQQFAGLETLTLARNPLRALPASIASLNR-------------------LREL-SIRACP 161

Query: 538 QFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALT 597
           +                L ++P    S D            E     +L +L +    + 
Sbjct: 162 E----------------LTELPEPLASTD---------ASGEHQGLVNLQSLRLEWTGIR 196

Query: 598 GSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 649
            S+P+S  NL+ ++SL +  + LS  +   +  L  L  L+L     +   P
Sbjct: 197 -SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYP 246

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.0 bits (141), Expect = 3e-09
 Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 3/113 (2%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKN-SSLRNLILSGTGFSG 59
           +L +    L       I  +P LE LDL     L+ + P      + L+ LIL       
Sbjct: 210 SLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLL 267

Query: 60  TLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSL 112
           TLP  I  L  L  +++R C     +P  +A L     +    +  +      
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =   99 bits (249), Expect = 3e-22
 Identities = 83/469 (17%), Positives = 159/469 (33%), Gaps = 25/469 (5%)

Query: 21  PTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSI-GNLENLTWVEVRRC 79
           P  + L LS+N + +  +P+    S LR L LS      +L   +    ++L +++V   
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110

Query: 80  NFTGPIPPSMANLTQLFHMDFSSNHFS--GHIPSLHKSRNLKYLDLSFNNLSGGISSTFW 137
                I      +  L H+D S N F              L +L LS             
Sbjct: 111 RLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 138 EQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDL 197
              ++  L+ L    + G    SL +  N   L L  +   +      N+S + L  L L
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHP-NSLFSVQVNMSVNALGHLQL 225

Query: 198 SGNRLEG-PVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISN 256
           S  +L        + F         L +     +         +        +  L+I N
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 257 NQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYS-----ISSIRLLDLHSNQLRGN- 310
             I   I    +      L  L + H                 + + +  L  +      
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 311 --IPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQV 368
              P   ++ ++++++ N FT       + +   +      N L     +          
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSS 404

Query: 369 LDLSNNNLSG--TIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
           L+  + +L+   +           ++ VLNL  N L G++   + P+   +++LDL  N+
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK---VKVLDLHNNR 461

Query: 427 LQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNF 475
           +   +PK + +   LQ L++ +N +           +SLQ + L  N +
Sbjct: 462 IM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =   99 bits (249), Expect = 3e-22
 Identities = 95/506 (18%), Positives = 170/506 (33%), Gaps = 53/506 (10%)

Query: 117 NLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLSNN 175
             K L LS N++S  +       L  L ++ LSHN +  S+   +FL   +LE L +S+N
Sbjct: 53  RTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110

Query: 176 QFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFE-LRNLYTLDLSSNKFSRLRLAS 234
           +    L  IS    + L  LDLS N  +  +P+   F  L  L  L LS+ KF +L L  
Sbjct: 111 R----LQNISCCPMASLRHLDLSFNDFDV-LPVCKEFGNLTKLTFLGLSAAKFRQLDLL- 164

Query: 235 SKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSI 294
                 P+         LD+ +  I G     +       L+ L    N L S+Q   S+
Sbjct: 165 ------PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH-LVFHPNSLFSVQVNMSV 217

Query: 295 SSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVG 354
           +++  L L + +L                       +         +             
Sbjct: 218 NALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277

Query: 355 VIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRN 414
           V         Y  + +L+               +  +L + ++          + ++   
Sbjct: 278 VE--------YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVF 328

Query: 415 CGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNN 474
             + I  L  +    +      + +    L+   N  +D+          LQ L+LQ N 
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388

Query: 475 FSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVI 534
                       +   L+ +D++ N  +     +                  +  L   +
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR-----------TCAWAESILVLN--L 435

Query: 535 SSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHN 594
           SSN             V   L   P +   +D  +N     IP+++   ++L  LN++ N
Sbjct: 436 SSNMLT--------GSVFRCL--PPKV-KVLDLHNNRIMS-IPKDVTHLQALQELNVASN 483

Query: 595 ALTGSIP-SSFGNLKQIESLDLSMNN 619
            L  S+P   F  L  ++ + L  N 
Sbjct: 484 QLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 42/229 (18%), Positives = 93/229 (40%), Gaps = 8/229 (3%)

Query: 2   LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTL 61
           L ++E   + +F      + +L    +     L      +   + +   +LS +      
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 62  PDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHF---SGHIPSLHKSRNL 118
                +  + T++   +  FT  +    + L +L  +    N                +L
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL 405

Query: 119 KYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFE 178
           + LD+S N+L+            ++ ++ LS N L GS+ R   L P ++ L L NN+  
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC--LPPKVKVLDLHNNRIM 463

Query: 179 NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKF 227
           +   +++++ +  L +L+++ N+L+  VP  +   L +L  + L  N +
Sbjct: 464 SIPKDVTHLQA--LQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 63/379 (16%), Positives = 122/379 (32%), Gaps = 27/379 (7%)

Query: 284 LLVSLQEPYSISSIRLLDLHSNQLR---GNIPHMSTNTSYVDYSNNHFTFIPADIGNFMS 340
           L+V    P+S     ++D  +  L     ++P     T  +  S N  + +     +F+S
Sbjct: 20  LIVGSMTPFSNELESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELRMPDISFLS 76

Query: 341 ETEYFFAANNSLVGVIPESVCKG-IYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGR 399
           E      ++N +   +   V       + LD+S+N L   I  C +A     L  L+L  
Sbjct: 77  ELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPMAS----LRHLDLSF 130

Query: 400 NNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQV-LDLKNNHISDNFPC- 457
           N+ +       F     L  L L   + + +    +A+ ++  + LDL + HI       
Sbjct: 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETES 190

Query: 458 -WLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEM 516
             + N + L ++   ++ FS  ++   N +    L  + L        ++    LT    
Sbjct: 191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT 250

Query: 517 MVAETKSGSELKHLRYVISSNQFYEVGVT-----------VTVKGVETMLLKVPNIFTSI 565
           ++  T    E      V     F+   V               +   T            
Sbjct: 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310

Query: 566 DFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 625
              +  F          F  +    +S +           +      L+ + N  +  + 
Sbjct: 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370

Query: 626 AQLASLNFLSVLNLSYNNL 644
              ++L  L  L L  N L
Sbjct: 371 QGCSTLKRLQTLILQRNGL 389

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 65/393 (16%), Positives = 133/393 (33%), Gaps = 27/393 (6%)

Query: 272 NGNLNFLNLSHNLLVSLQEPYSI-SSIRLLDLHSNQLRGNIPHMS----TNTSYVDYSNN 326
           N   + ++ S+  L  +  P  +    + L L  N +   +        +    +  S+N
Sbjct: 30  NELESMVDYSNRNLTHV--PKDLPPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHN 86

Query: 327 HFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIA 386
               +   +  F  + EY   ++N L   I       +  + LDLS N+    +P C   
Sbjct: 87  RIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCCPMASL--RHLDLSFNDFD-VLPVCKEF 142

Query: 387 QSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLA--NCNMLQVL 444
            + T L  L L            +   +    +LDL    ++G   +SL   N  +L ++
Sbjct: 143 GNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202

Query: 445 DLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGH-------ISCPRNNVSWPLLQIVDLA 497
              N+  S      +     LQ+  ++ N+ +                +    LQ ++  
Sbjct: 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262

Query: 498 SNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVT-VTVKGVETMLL 556
                      W   +E + +        +    +  S      + +  V  +       
Sbjct: 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE 322

Query: 557 KVPNIFTSI---DFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESL 613
            + ++F  +     S ++             S   LN + N  T S+      LK++++L
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL 382

Query: 614 DLSMNNLS--GKIPAQLASLNFLSVLNLSYNNL 644
            L  N L    K+     +++ L  L++S N+L
Sbjct: 383 ILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 34/180 (18%), Positives = 65/180 (36%), Gaps = 30/180 (16%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            L+ ++        +    +  L+TL L  N L   +                       
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL--KNFFK-------------------- 394

Query: 61  LPDSIGNLENLTWVEVRRCNFT-GPIPPSMANLTQLFHMDFSSNHFSGHI-PSLHKSRNL 118
           +     N+ +L  ++V   +        + A    +  ++ SSN  +G +   L     +
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKV 452

Query: 119 KYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLF-LLPNLETLWLSNNQF 177
           K LDL  N +   I       L  L  + ++ N L  S+P  +F  L +L+ +WL +N +
Sbjct: 453 KVLDLHNNRIM-SIPKDV-THLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 96.2 bits (240), Expect = 7e-22
 Identities = 58/297 (19%), Positives = 113/297 (38%), Gaps = 34/297 (11%)

Query: 23  LETLDLSENQLLQGSLP-NFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNF 81
           L  +  S+  L    +P + P +     L L     +        NL+NL  + +     
Sbjct: 33  LRVVQCSDLGLE--KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 82  TGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLV 141
           +   P + A L +L  +  S N     +P     + L+ L +  N ++  +  + +  L 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPE-KMPKTLQELRVHENEIT-KVRKSVFNGLN 145

Query: 142 NLNLVLLSHNSL-NGSIPRSLFL-LPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSG 199
            + +V L  N L +  I    F  +  L  + +++      +  I       L +L L G
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD----TNITTIPQGLPPSLTELHLDG 201

Query: 200 NRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQI 259
           N++   V  + +  L NL  L LS N  S +   S        L N   L  L ++NN++
Sbjct: 202 NKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGS--------LANTPHLRELHLNNNKL 252

Query: 260 PGEIPNWIWEVGNGNLNFLNLSHNLLVSLQE--------PYSISSIRLLDLHSNQLR 308
             ++P  +    +  +  + L +N + ++              +S   + L SN ++
Sbjct: 253 -VKVPGGLA--DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.4 bits (225), Expect = 5e-20
 Identities = 57/291 (19%), Positives = 105/291 (36%), Gaps = 25/291 (8%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPN--FPKNSSLRNLILSGTGFS 58
            LDL    +          +  L TL L  N++    +    F     L  L LS     
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQLK 113

Query: 59  GTLPDSIGNLENLTWVEVRRCNFTGPIPPSM-ANLTQLFHMDFSSNHF-SGHIPS--LHK 114
             LP+ +   + L  + V     T  +  S+   L Q+  ++  +N   S  I +     
Sbjct: 114 -ELPEKM--PKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 115 SRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLS 173
            + L Y+ ++  N++  I       L  L+   L  N +   +  +    L NL  L LS
Sbjct: 170 MKKLSYIRIADTNIT-TIPQGLPPSLTELH---LDGNKIT-KVDAASLKGLNNLAKLGLS 224

Query: 174 NNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLA 233
            N     +   S  ++  L +L L+ N+L   VP   + + + +  + L +N  S +   
Sbjct: 225 FNSISA-VDNGSLANTPHLRELHLNNNKLVK-VP-GGLADHKYIQVVYLHNNNISAIGSN 281

Query: 234 SSKPRVIPILKNQSQLSGLDISNNQI-PGEIPNWIWEVGNGNLNFLNLSHN 283
              P        ++  SG+ + +N +   EI    +         + L + 
Sbjct: 282 DFCPPG--YNTKKASYSGVSLFSNPVQYWEIQPSTFR-CVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.5 bits (220), Expect = 3e-19
 Identities = 60/326 (18%), Positives = 115/326 (35%), Gaps = 62/326 (19%)

Query: 115 SRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLS 173
             +   LDL  N ++      F + L NL+ ++L +N ++  I    F  L  LE L+LS
Sbjct: 51  PPDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLS 108

Query: 174 NNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLA 233
                NQL E+       L +L +  N +   V  S+   L  +  ++L +N      + 
Sbjct: 109 K----NQLKELPEKMPKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIE 163

Query: 234 SSKPRVIPILKNQSQLSGLDISNNQI---PGEIPNWIWEVGNGNLNFLNLSHNLLVSLQE 290
           +         +   +LS + I++  I   P  +P         +L  L+L  N +  +  
Sbjct: 164 NG------AFQGMKKLSYIRIADTNITTIPQGLP--------PSLTELHLDGNKITKVDA 209

Query: 291 PY--SISSIRLLDLHSNQLRGNIPHMS----TNTSYVDYSNNHFTFIPADIGNFMSETEY 344
                ++++  L L  N +   + + S     +   +  +NN    +P            
Sbjct: 210 ASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVKVPGG---------- 258

Query: 345 FFAANNSLVGVIPESVCKGIYFQVLDLSNNNLS----GTIPACLIAQSETTLGVLNLGRN 400
             A +  +              QV+ L NNN+S               + +   ++L  N
Sbjct: 259 -LADHKYI--------------QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303

Query: 401 NLNGT-LSDTIFPRNCGLQILDLGGN 425
            +    +  + F        + LG  
Sbjct: 304 PVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 67/370 (18%), Positives = 116/370 (31%), Gaps = 82/370 (22%)

Query: 142 NLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNR 201
           +L +V  S   L   +P+ L   P+   L L NN+    + +    +   L  L L  N+
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNK 87

Query: 202 LEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPG 261
           +   +       L  L  L LS N+   L      P  +P       L  L +  N+I  
Sbjct: 88  ISK-ISPGAFAPLVKLERLYLSKNQLKEL------PEKMP-----KTLQELRVHENEI-T 134

Query: 262 EIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSI----SSIRLLDLHSNQLRGNIPHMSTN 317
           ++   ++  G   +  + L  N L S             +  + +    +      +  +
Sbjct: 135 KVRKSVFN-GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 193

Query: 318 TSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLS 377
            + +    N  T + A                N+L                L LS N++S
Sbjct: 194 LTELHLDGNKITKVDAAS----------LKGLNNL--------------AKLGLSFNSIS 229

Query: 378 GTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLAN 437
                                       + +        L+ L L  N+L   VP  LA+
Sbjct: 230 ---------------------------AVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261

Query: 438 CNMLQVLDLKNNHISD------NFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSW-PL 490
              +QV+ L NN+IS         P +    +S   + L SN    +     +      +
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ-YWEIQPSTFRCVYV 320

Query: 491 LQIVDLASNK 500
              V L + K
Sbjct: 321 RAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 51/272 (18%), Positives = 91/272 (33%), Gaps = 48/272 (17%)

Query: 392 LGVLNLGRNNLNGTLSDTIFPRNC--GLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNN 449
           L V+      L         P++      +LDL  N++  +      N   L  L L NN
Sbjct: 33  LRVVQCSDLGL------EKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 86

Query: 450 HISDNFPCWLGNASSLQVLVLQSNNFSG-HISCPRNNVSWPLLQIVDLASNKFSGRLSQK 508
            IS   P        L+ L L  N         P+       LQ + +  N+ + ++ + 
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT------LQELRVHENEIT-KVRKS 139

Query: 509 WLLTMEEMMVAETKSGSELKHLRYV-ISSNQFYEVGVTVTV----KGVETMLL------K 557
                           + L  +  V + +N     G+        K +  + +       
Sbjct: 140 VF--------------NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185

Query: 558 VP-NIFTSI---DFSSNNFEGPIPEEM-GRFKSLYALNMSHNALTGSIPSSFGNLKQIES 612
           +P  +  S+       N     +         +L  L +S N+++     S  N   +  
Sbjct: 186 IPQGLPPSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244

Query: 613 LDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
           L L+ N L  K+P  LA   ++ V+ L  NN+
Sbjct: 245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.9 bits (169), Expect = 9e-13
 Identities = 54/362 (14%), Positives = 111/362 (30%), Gaps = 79/362 (21%)

Query: 296 SIRLLDLHSNQLRGNIP-HMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVG 354
            +R++      L   +P  +  +T+ +D  NN  T I       +         NN +  
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 355 VIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRN 414
           + P +    +  + L LS N L   +P  +      TL  L +  N +   +  ++F   
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLK-ELPEKMP----KTLQELRVHENEIT-KVRKSVFNGL 144

Query: 415 CGLQILDLGGNQLQ--GVVPKSLANCNMLQVLDLKNNHIS---DNFPCWLGNASSLQVLV 469
             + +++LG N L+  G+   +      L  + + + +I+      P       SL  L 
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP------PSLTELH 198

Query: 470 LQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKH 529
           L  N                  +I  + +    G                       L +
Sbjct: 199 LDGN------------------KITKVDAASLKG-----------------------LNN 217

Query: 530 LRY-VISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYA 588
           L    +S N    V            L   P++   +  ++N     +P  +   K +  
Sbjct: 218 LAKLGLSFNSISAVD--------NGSLANTPHL-RELHLNNNKLVK-VPGGLADHKYIQV 267

Query: 589 LNMSHNALTG------SIPSSFGNLKQIESLDLSMNNLS-GKIPAQL-ASLNFLSVLNLS 640
           + + +N ++         P           + L  N +   +I       +   + + L 
Sbjct: 268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327

Query: 641 YN 642
             
Sbjct: 328 NY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.9 bits (169), Expect = 9e-13
 Identities = 55/286 (19%), Positives = 95/286 (33%), Gaps = 43/286 (15%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
            +LDL NN ++  I           L  L L  N ++  +S   F     L+ L L  NQ
Sbjct: 55  ALLDLQNNKIT-EIKDGDFKNL-KNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 427 LQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNV 486
           L+ +  K       LQ L +  N I+          + + V+ L +N      S   N  
Sbjct: 112 LKELPEKMPKT---LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK--SSGIENGA 166

Query: 487 SWPL--LQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGV 544
              +  L  + +A    +  + Q                   L  L   +  N+  +V  
Sbjct: 167 FQGMKKLSYIRIADTNIT-TIPQGLP--------------PSLTELH--LDGNKITKVD- 208

Query: 545 TVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSF 604
                     L  + N+   +  S N+        +     L  L++++N L   +P   
Sbjct: 209 -------AASLKGLNNL-AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259

Query: 605 GNLKQIESLDLSMNNLSG------KIPAQLASLNFLSVLNLSYNNL 644
            + K I+ + L  NN+S         P         S ++L  N +
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.3 bits (235), Expect = 3e-21
 Identities = 54/297 (18%), Positives = 99/297 (33%), Gaps = 35/297 (11%)

Query: 23  LETLDLSENQLLQGSLP-NFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNF 81
           L  +  S+  L   ++P     +     L L     S    D    L++L  + +     
Sbjct: 35  LRVVQCSDLGLK--AVPKEISPD--TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 82  TGPIPPSM-ANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQL 140
           +  I     + L +L  +  S NH    IP  +   +L  L +  N +   +    +  L
Sbjct: 91  SK-IHEKAFSPLRKLQKLYISKNHLV-EIPP-NLPSSLVELRIHDNRIR-KVPKGVFSGL 146

Query: 141 VNLNLVLLSHNSL-NGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSG 199
            N+N + +  N L N       F    L  L +S      +L  I       L +L L  
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE----AKLTGIPKDLPETLNELHLDH 202

Query: 200 NRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQI 259
           N+++  + +  +     LY L L  N+   +   S        L     L  L + NN++
Sbjct: 203 NKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGS--------LSFLPTLRELHLDNNKL 253

Query: 260 PGEIPNWIWEVGNGNLNFLNLSHNLLVSLQE--------PYSISSIRLLDLHSNQLR 308
              +P  +       L  + L  N +  +              +    + L +N + 
Sbjct: 254 -SRVPAGLP--DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 84.3 bits (209), Expect = 6e-18
 Identities = 66/327 (20%), Positives = 113/327 (34%), Gaps = 63/327 (19%)

Query: 115 SRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLS 173
           S +   LDL  N++S  +    ++ L +L  ++L +N ++  I    F  L  L+ L++S
Sbjct: 53  SPDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYIS 110

Query: 174 NNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLA 233
                N L EI     S L +L +  NR+   VP  +   LRN+  +++  N        
Sbjct: 111 K----NHLVEIPPNLPSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFE 165

Query: 234 SSKPRVIPILKNQSQLSGLDISNNQ---IPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQE 290
                          L+ L IS  +   IP ++P          LN L+L HN + +++ 
Sbjct: 166 PG------AFDGLK-LNYLRISEAKLTGIPKDLP--------ETLNELHLDHNKIQAIEL 210

Query: 291 PY--SISSIRLLDLHSNQLRGNIPHMS----TNTSYVDYSNNHFTFIPADIGNFMSETEY 344
                 S +  L L  NQ+R  I + S         +   NN  + +PA           
Sbjct: 211 EDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSRVPAG---------- 259

Query: 345 FFAANNSLVGVIPESVCKGIYFQVLDLSNNNLS----GTIPACLIAQSETTLGVLNLGRN 400
                  L              QV+ L  NN++                     ++L  N
Sbjct: 260 -LPDLKLL--------------QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304

Query: 401 NL-NGTLSDTIFPRNCGLQILDLGGNQ 426
            +    +    F        +  G  +
Sbjct: 305 PVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 57/296 (19%), Positives = 109/296 (36%), Gaps = 36/296 (12%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPN--FPKNSSLRNLILSGTGFS 58
            LDL    +     +    +  L  L L  N++    +    F     L+ L +S     
Sbjct: 58  LLDLQNNDISELRKDDFKGLQHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 59  GTLPDSIGNLENLTWVEVRRCNFTGPIPPSM-ANLTQLFHMDFSSNH--FSGHIPSLHKS 115
             +P ++    +L  + +        +P  + + L  +  ++   N    SG  P     
Sbjct: 116 -EIPPNL--PSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 116 RNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLSN 174
             L YL +S   L+ GI     E L  L+   L HN +  +I     L    L  L L +
Sbjct: 172 LKLNYLRISEAKLT-GIPKDLPETLNELH---LDHNKIQ-AIELEDLLRYSKLYRLGLGH 226

Query: 175 NQFENQLPEISNVSSSV------LFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFS 228
           NQ       I  + +        L +L L  N+L   VP + + +L+ L  + L +N  +
Sbjct: 227 NQ-------IRMIENGSLSFLPTLRELHLDNNKLSR-VP-AGLPDLKLLQVVYLHTNNIT 277

Query: 229 RLRLASSKPRVIPILKNQSQLSGLDISNNQIP-GEIPNWIWEVGNGNLNFLNLSHN 283
           ++ +    P  +     ++  +G+ + NN +P  E+    +     +   +   + 
Sbjct: 278 KVGVNDFCP--VGFGVKRAYYNGISLFNNPVPYWEVQPATFR-CVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 62/369 (16%), Positives = 116/369 (31%), Gaps = 81/369 (21%)

Query: 142 NLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNR 201
           +L +V  S   L  ++P+ +   P+   L L NN     L +        L+ L L  N+
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNK 89

Query: 202 LEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPG 261
           +   +       LR L  L +S N    +      P  +P     S L  L I +N+I  
Sbjct: 90  ISK-IHEKAFSPLRKLQKLYISKNHLVEI------PPNLP-----SSLVELRIHDNRI-R 136

Query: 262 EIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSI---SSIRLLDLHSNQLRGNIPHMSTNT 318
           ++P  ++  G  N+N + +  N L +            +  L +   +L G    +    
Sbjct: 137 KVPKGVFS-GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETL 195

Query: 319 SYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSG 378
           + +   +N    I  +               + L                L L +N +  
Sbjct: 196 NELHLDHNKIQAIELED----------LLRYSKL--------------YRLGLGHNQIR- 230

Query: 379 TIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANC 438
                                      + +        L+ L L  N+L   VP  L + 
Sbjct: 231 --------------------------MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263

Query: 439 NMLQVLDLKNNHIS----DNFP--CWLGNASSLQVLVLQSNNFSGHISCPRNNVSW-PLL 491
            +LQV+ L  N+I+    ++F    +    +    + L +N    +              
Sbjct: 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP-YWEVQPATFRCVTDR 322

Query: 492 QIVDLASNK 500
             +   + K
Sbjct: 323 LAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 37/216 (17%), Positives = 72/216 (33%), Gaps = 17/216 (7%)

Query: 21  PTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGF-SGTLPDSIGNLENLTWVEVRRC 79
            +L  L + +N++ +     F    ++  + + G    +        +   L ++ +   
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182

Query: 80  NFTGPIPPSM-ANLTQLFHMDFSSNHFSGHIP--SLHKSRNLKYLDLSFNNLSGGISSTF 136
             TG IP  +   L +L       N     I    L +   L  L L  N +   I +  
Sbjct: 183 KLTG-IPKDLPETLNEL---HLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRM-IENGS 236

Query: 137 WEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFEN-----QLPEISNVSSSV 191
              L  L  + L +N L+  +P  L  L  L+ ++L  N           P    V  + 
Sbjct: 237 LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295

Query: 192 LFDLDLSGNRLE-GPVPISIIFELRNLYTLDLSSNK 226
              + L  N +    V  +    + +   +   + K
Sbjct: 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 53/271 (19%), Positives = 90/271 (33%), Gaps = 47/271 (17%)

Query: 392 LGVLNLGRNNLNGTLSDTIFPRNC--GLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNN 449
           L V+      L         P+       +LDL  N +  +          L  L L NN
Sbjct: 35  LRVVQCSDLGL------KAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN 88

Query: 450 HISDNFPCWLGNASSLQVLVLQSNNFSG-HISCPRNNVSWPLLQIVDLASNKFSGRLSQK 508
            IS            LQ L +  N+      + P +      L  + +  N+   ++ + 
Sbjct: 89  KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS------LVELRIHDNRIR-KVPKG 141

Query: 509 WLLTMEEMMVAETKSGSELKHLRYV-ISSNQFYEVGVTVTV-KGVETMLLKV-------- 558
                           S L+++  + +  N     G       G++   L++        
Sbjct: 142 VF--------------SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGI 187

Query: 559 -PNIFTSI---DFSSNNFEGPIPEEM-GRFKSLYALNMSHNALTGSIPSSFGNLKQIESL 613
             ++  ++       N  +  I  E   R+  LY L + HN +      S   L  +  L
Sbjct: 188 PKDLPETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLREL 246

Query: 614 DLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
            L  N LS ++PA L  L  L V+ L  NN+
Sbjct: 247 HLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 61/355 (17%), Positives = 115/355 (32%), Gaps = 68/355 (19%)

Query: 274 NLNFLNLSHNLLVSLQEPYSIS-SIRLLDLHSNQLRGNIPHMS----TNTSYVDYSNNHF 328
           +L  +  S   L ++  P  IS    LLDL +N +   +         +   +   NN  
Sbjct: 34  HLRVVQCSDLGLKAV--PKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 329 TFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQS 388
           + I     + + + +  + + N LV  IP ++   +    L + +N +   +P  + +  
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSL--VELRIHDNRIR-KVPKGVFSGL 146

Query: 389 ETTLGVLNLGRNNL-NGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLK 447
              +  + +G N L N       F     L  L +   +L G+          L  L L 
Sbjct: 147 -RNMNCIEMGGNPLENSGFEPGAF-DGLKLNYLRISEAKLTGIPKDLPET---LNELHLD 201

Query: 448 NNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPL--LQIVDLASNKFSGRL 505
           +N I       L   S L  L L  N     I    N     L  L+ + L +NK     
Sbjct: 202 HNKIQAIELEDLLRYSKLYRLGLGHNQ----IRMIENGSLSFLPTLRELHLDNNK----- 252

Query: 506 SQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSI 565
                L+     + + K    L+ +   + +N   +VG                N F  +
Sbjct: 253 -----LSRVPAGLPDLKL---LQVVY--LHTNNITKVG---------------VNDFCPV 287

Query: 566 DFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSI--PSSFGNLKQIESLDLSMN 618
            F                     +++ +N +      P++F  +    ++     
Sbjct: 288 GFGVKR------------AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.7 bits (153), Expect = 9e-11
 Identities = 43/285 (15%), Positives = 94/285 (32%), Gaps = 42/285 (14%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
            +LDL NN++S  +           L  L L  N ++  + +  F     LQ L +  N 
Sbjct: 57  TLLDLQNNDIS-ELRKDDFKGL-QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH 113

Query: 427 LQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNV 486
           L  + P   ++   L  L + +N I            ++  + +  N    +        
Sbjct: 114 LVEIPPNLPSS---LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE-NSGFEPGAF 169

Query: 487 SWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTV 546
               L  + ++  K +  + +                   L  L   +  N+   +    
Sbjct: 170 DGLKLNYLRISEAKLT-GIPKDLP--------------ETLNELH--LDHNKIQAIE--- 209

Query: 547 TVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGN 606
                   LL+   +   +    N         +    +L  L++ +N L+  +P+   +
Sbjct: 210 -----LEDLLRYSKL-YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262

Query: 607 LKQIESLDLSMNNLSGKIPAQ-------LASLNFLSVLNLSYNNL 644
           LK ++ + L  NN++ K+               + + ++L  N +
Sbjct: 263 LKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 94.4 bits (234), Expect = 2e-20
 Identities = 52/306 (16%), Positives = 105/306 (34%), Gaps = 34/306 (11%)

Query: 47  LRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFS 106
           +   I   T      PD            +++ + T  +      L  +  +  +++   
Sbjct: 1   MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 107 GHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPN 166
             +  +    N+  L L+ N L+          L NL  + L  N +   +  SL  L  
Sbjct: 57  -SVQGIQYLPNVTKLFLNGNKLT---DIKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKK 110

Query: 167 LETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNK 226
           L++L L +N   + +  + ++    L  L L  N++     I+++  L  L TL L  N+
Sbjct: 111 LKSLSLEHNGISD-INGLVHLPQ--LESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQ 164

Query: 227 FSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGN-GNLNFLNLSHNLL 285
            S           I  L   ++L  L +S N I     + +  +    NL+ L L     
Sbjct: 165 ISD----------IVPLAGLTKLQNLYLSKNHI-----SDLRALAGLKNLDVLELFSQEC 209

Query: 286 VSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYF 345
           ++    +  + +    +      G++      +   DY   +  +   +  N +S   Y 
Sbjct: 210 LNKPINHQSNLVVPNTV--KNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQ 267

Query: 346 FAANNS 351
                 
Sbjct: 268 PVTIGK 273

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.2 bits (192), Expect = 3e-15
 Identities = 61/350 (17%), Positives = 103/350 (29%), Gaps = 84/350 (24%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
             +L +  +         ++ +++ +  + + +   S+       ++  L L+G   +  
Sbjct: 25  KDNLKKKSVTD--AVTQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKLT-- 78

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
               I  L NL                   NL  L       N     + SL   + LK 
Sbjct: 79  ---DIKPLTNLK------------------NLGWL---FLDENKIK-DLSSLKDLKKLKS 113

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           L L  N +S                       +NG     L  LP LE+L+L N    N+
Sbjct: 114 LSLEHNGIS----------------------DING-----LVHLPQLESLYLGN----NK 142

Query: 181 LPEISNVSS-SVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRV 239
           + +I+ +S  + L  L L  N++     I  +  L  L  L LS N  S           
Sbjct: 143 ITDITVLSRLTKLDTLSLEDNQISD---IVPLAGLTKLQNLYLSKNHIS----------D 189

Query: 240 IPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSIS---S 296
           +  L     L  L++ + +   +  N        NL   N   N   SL  P  IS    
Sbjct: 190 LRALAGLKNLDVLELFSQECLNKPINHQ-----SNLVVPNTVKNTDGSLVTPEIISDDGD 244

Query: 297 IRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFF 346
               ++  +               V        F               +
Sbjct: 245 YEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSY 294

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.1 bits (163), Expect = 9e-12
 Identities = 46/328 (14%), Positives = 96/328 (29%), Gaps = 82/328 (25%)

Query: 179 NQLPEISNVSS-SVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKP 237
             + +I    + +     +L    +   V  +   EL ++  +  +++            
Sbjct: 9   TPIKQIFPDDAFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKS-------- 57

Query: 238 RVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSI 297
             +  ++    ++ L ++ N++  +I          NL +L L  N +  L     +  +
Sbjct: 58  --VQGIQYLPNVTKLFLNGNKLT-DIKPL---TNLKNLGWLFLDENKIKDLSSLKDLKKL 111

Query: 298 RLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIP 357
           + L L  N +  +I  +                                           
Sbjct: 112 KSLSLEHNGIS-DINGLVHLPQ-------------------------------------- 132

Query: 358 ESVCKGIYFQVLDLSNNNLSGTIP-ACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCG 416
                    + L L NN ++     + L     T L  L+L  N ++             
Sbjct: 133 --------LESLYLGNNKITDITVLSRL-----TKLDTLSLEDNQIS---DIVPLAGLTK 176

Query: 417 LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNF- 475
           LQ L L  N +  +  ++LA    L VL+L +    +       N      +     +  
Sbjct: 177 LQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

Query: 476 -----SGHISCPRNNVSWPLLQIVDLAS 498
                S      + NV W L +  +  S
Sbjct: 235 TPEIISDDGDYEKPNVKWHLPEFTNEVS 262

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.0 bits (137), Expect = 1e-08
 Identities = 47/300 (15%), Positives = 94/300 (31%), Gaps = 72/300 (24%)

Query: 346 FAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGT 405
              +  +  + P+           +L   +++  +          ++  +    +++  +
Sbjct: 5   ITVSTPIKQIFPDDAFAET--IKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIK-S 57

Query: 406 LSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSL 465
           +    +  N  +  L L GN+L  + P  L N   L  L L  N I D     L +   L
Sbjct: 58  VQGIQYLPN--VTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKL 111

Query: 466 QVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGS 525
           + L L+ N     IS     V  P L+ + L +NK                 + +    S
Sbjct: 112 KSLSLEHNG----ISDINGLVHLPQLESLYLGNNK-----------------ITDITVLS 150

Query: 526 ELKHLRYV-ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFK 584
            L  L  + +  NQ                        + I   +               
Sbjct: 151 RLTKLDTLSLEDNQI-----------------------SDIVPLAG------------LT 175

Query: 585 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
            L  L +S N ++  +  +   LK ++ L+L       K     ++L   + +  +  +L
Sbjct: 176 KLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 43/234 (18%)

Query: 417 LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS 476
               +L    +   V       N +  +   N+ I       +    ++  L L  N   
Sbjct: 23  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK-- 76

Query: 477 GHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV-IS 535
             ++  +   +   L  + L  NK                 + +  S  +LK L+ + + 
Sbjct: 77  --LTDIKPLTNLKNLGWLFLDENK-----------------IKDLSSLKDLKKLKSLSLE 117

Query: 536 SNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNA 595
            N   ++            L+ +P +  S+   +N         + R   L  L++  N 
Sbjct: 118 HNGISDI----------NGLVHLPQL-ESLYLGNNKITDITV--LSRLTKLDTLSLEDNQ 164

Query: 596 LTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 649
           ++  I      L ++++L LS N++S  + A LA L  L VL L     + K  
Sbjct: 165 IS-DI-VPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPI 214

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 34/229 (14%), Positives = 80/229 (34%), Gaps = 43/229 (18%)

Query: 417 LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS 476
           +         ++ + P            +LK   ++D         +S+  ++  +++  
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 477 GHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV-IS 535
             +   +   +   +  + L  NK                 + + K  + LK+L ++ + 
Sbjct: 57  -SVQGIQYLPN---VTKLFLNGNK-----------------LTDIKPLTNLKNLGWLFLD 95

Query: 536 SNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNA 595
            N+  ++          + L  +  +  S+    N         +     L +L + +N 
Sbjct: 96  ENKIKDL----------SSLKDLKKL-KSLSLEHNGIS--DINGLVHLPQLESLYLGNNK 142

Query: 596 LTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
           +T    +    L ++++L L  N +S  I   LA L  L  L LS N++
Sbjct: 143 IT--DITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHI 187

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 90.6 bits (225), Expect = 2e-19
 Identities = 42/205 (20%), Positives = 81/205 (39%), Gaps = 12/205 (5%)

Query: 1   TLDLSECGLQGKFPEKILQ-VPTLETLDLSENQLLQGSLPN--FPKNSSLRNLILSGTGF 57
            L L    ++ +        + +L TL+L +N L    +P+  F   S LR L L     
Sbjct: 103 VLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWL--TVIPSGAFEYLSKLRELWLRNNPI 159

Query: 58  SGTLPDSIGNLENLTWVEVRRCNFTGPIPPSM-ANLTQLFHMDFSSNHFSGHIPSLHKSR 116
                 +   + +L  +++        I       L  L +++    +    +P+L    
Sbjct: 160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLV 218

Query: 117 NLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLSNN 175
            L+ L++S N+       +F   L +L  + + ++ ++  I R+ F  L +L  L L++N
Sbjct: 219 GLEELEMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHN 276

Query: 176 QFENQLPEISNVSSSVLFDLDLSGN 200
              + LP         L +L L  N
Sbjct: 277 NLSS-LPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.3 bits (214), Expect = 5e-18
 Identities = 55/237 (23%), Positives = 86/237 (36%), Gaps = 39/237 (16%)

Query: 85  IPPSM-ANLTQLFHMDFSSNHFSGHIPS--LHKSRNLKYLDLSFNNLSGGISSTFWEQLV 141
           +P  + +N   L   +   N+    I +       +L+ L L  N++       F   L 
Sbjct: 69  VPQGIPSNTRYL---NLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN-GLA 123

Query: 142 NLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLSNNQFENQLPEISNVSSSV------LFD 194
           +LN + L  N L   IP   F  L  L  LWL NN        I ++ S        L  
Sbjct: 124 SLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNP-------IESIPSYAFNRVPSLMR 175

Query: 195 LDLSG-NRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLD 253
           LDL    +LE  +       L NL  L+L                 +P L     L  L+
Sbjct: 176 LDLGELKKLEY-ISEGAFEGLFNLKYLNLGMCNIKD----------MPNLTPLVGLEELE 224

Query: 254 ISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEP--YSISSIRLLDLHSNQLR 308
           +S N  P   P      G  +L  L + ++ +  ++      ++S+  L+L  N L 
Sbjct: 225 MSGNHFPEIRPGSFH--GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.3 bits (214), Expect = 5e-18
 Identities = 52/286 (18%), Positives = 107/286 (37%), Gaps = 46/286 (16%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            +  +  GL  + P+ I        L+L EN +             ++            
Sbjct: 58  KVVCTRRGLS-EVPQGIP--SNTRYLNLMENNI-----------QMIQ------------ 91

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPS--LHKSRNL 118
             D+  +L +L  +++ R +       +   L  L  ++   N  +  IPS        L
Sbjct: 92  -ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKL 149

Query: 119 KYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLSNNQF 177
           + L L  N +   I S  + ++ +L  + L        I    F  L NL+ L L     
Sbjct: 150 RELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208

Query: 178 ENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKP 237
           ++ +P ++ +    L +L++SGN     +       L +L  L + +++ S +   +   
Sbjct: 209 KD-MPNLTPLVG--LEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERNA--- 261

Query: 238 RVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHN 283
                    + L  L++++N +   +P+ ++      L  L+L HN
Sbjct: 262 -----FDGLASLVELNLAHNNL-SSLPHDLFT-PLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 60/295 (20%), Positives = 98/295 (33%), Gaps = 71/295 (24%)

Query: 115 SRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLS 173
             N +YL+L  NN+    + TF   L +L ++ L  NS+   I    F  L +L TL L 
Sbjct: 74  PSNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELF 131

Query: 174 NNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLA 233
           +N        ++ + S     L                     L  L L +N    +   
Sbjct: 132 DNW-------LTVIPSGAFEYL-------------------SKLRELWLRNNPIESIPSY 165

Query: 234 SSKPRVIPILKNQSQLSGLDISN-NQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPY 292
                          L  LD+    ++   I    +E G  NL +LNL    +  +    
Sbjct: 166 --------AFNRVPSLMRLDLGELKKL-EYISEGAFE-GLFNLKYLNLGMCNIKDMPNLT 215

Query: 293 SISSIRLLDLHSNQLRGNIPHMS----TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAA 348
            +  +  L++  N     I   S    ++   +   N+  + I  +           F  
Sbjct: 216 PLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNA----------FDG 264

Query: 349 NNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLN 403
             SL                L+L++NNLS ++P  L       L  L+L  N  N
Sbjct: 265 LASL--------------VELNLAHNNLS-SLPHDLFTPL-RYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 55/283 (19%), Positives = 105/283 (37%), Gaps = 38/283 (13%)

Query: 366 FQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGN 425
           F  +  +   LS  +P  +   S T    LNL  NN+   +    F     L++L LG N
Sbjct: 56  FSKVVCTRRGLS-EVPQGI--PSNTR--YLNLMENNIQ-MIQADTFRHLHHLEVLQLGRN 109

Query: 426 QLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNN 485
            ++ +   +      L  L+L +N ++          S L+ L L++N            
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN------------ 157

Query: 486 VSWPLLQIVDLASNKFSG--RLSQKWLLTMEEMMVAETKSGSELKHLRY-VISSNQFYEV 542
                  I  + S  F+    L +  L  ++++      +   L +L+Y  +      ++
Sbjct: 158 ------PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211

Query: 543 GVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPS 602
                       L  +  +   ++ S N+F    P       SL  L + ++ ++    +
Sbjct: 212 P----------NLTPLVGL-EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260

Query: 603 SFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 645
           +F  L  +  L+L+ NNLS         L +L  L+L +N   
Sbjct: 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 90.2 bits (224), Expect = 2e-19
 Identities = 50/267 (18%), Positives = 98/267 (36%), Gaps = 24/267 (8%)

Query: 21  PTLETLDLSENQLLQGSLP-NFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRC 79
                +      L    +P      ++ R L L          +S  +L +L  +++ R 
Sbjct: 43  NQFSKVICVRKNLR--EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 80  NFTGPIPPSMANLTQLFHMDFSSNHFSGHIPS--LHKSRNLKYLDLSFNNLSGGISSTFW 137
           +       +   L  L  ++   N  +  IP+        LK L L  N +   I S  +
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAF 156

Query: 138 EQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLSNNQFENQLPEISNVSSSVLFDLD 196
            ++ +L  + L        I    F  L NL  L L+       +P ++ +    L +LD
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPNLTPLIK--LDELD 213

Query: 197 LSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISN 256
           LSGN L   +       L +L  L +  ++   +   +          N   L  +++++
Sbjct: 214 LSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNA--------FDNLQSLVEINLAH 264

Query: 257 NQIPGEIPNWIWEVGNGNLNFLNLSHN 283
           N +   +P+ ++     +L  ++L HN
Sbjct: 265 NNLT-LLPHDLFT-PLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.2 bits (198), Expect = 4e-16
 Identities = 55/300 (18%), Positives = 97/300 (32%), Gaps = 81/300 (27%)

Query: 115 SRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLS 173
           S N + L+L  N +     ++F + L +L ++ LS N +  +I    F  L NL TL L 
Sbjct: 63  STNTRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELF 120

Query: 174 NNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLA 233
           +N+       ++ + +     L                     L  L L +N    +   
Sbjct: 121 DNR-------LTTIPNGAFVYL-------------------SKLKELWLRNNPIESIPSY 154

Query: 234 SSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNG------NLNFLNLSHNLLVS 287
           +              L  LD+            +  +  G      NL +LNL+   L  
Sbjct: 155 A--------FNRIPSLRRLDLGEL-------KRLSYISEGAFEGLSNLRYLNLAMCNLRE 199

Query: 288 LQEPYSISSIRLLDLHSNQLR----GNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETE 343
           +     +  +  LDL  N L     G+   +  +   +    +    I  +         
Sbjct: 200 IPNLTPLIKLDELDLSGNHLSAIRPGSFQGL-MHLQKLWMIQSQIQVIERNA-------- 250

Query: 344 YFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLN 403
             F    SL                ++L++NNL+  +P  L       L  ++L  N  N
Sbjct: 251 --FDNLQSL--------------VEINLAHNNLT-LLPHDLFTPL-HHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.8 bits (197), Expect = 5e-16
 Identities = 51/280 (18%), Positives = 94/280 (33%), Gaps = 55/280 (19%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
           ++L+L  N +          +    L +L L RN++  T+    F     L  L+L  N+
Sbjct: 67  RLLNLHENQIQIIKVNSF--KHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 427 LQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNV 486
           L  +   +    + L+ L L+NN I            SL+ L L                
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK------------ 171

Query: 487 SWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRY-VISSNQFYEVGVT 545
                ++  ++   F G                       L +LRY  ++     E+   
Sbjct: 172 -----RLSYISEGAFEG-----------------------LSNLRYLNLAMCNLREIP-- 201

Query: 546 VTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFG 605
                    L  +  +   +D S N+     P        L  L M  + +     ++F 
Sbjct: 202 --------NLTPLIKL-DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252

Query: 606 NLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 645
           NL+ +  ++L+ NNL+         L+ L  ++L +N   
Sbjct: 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.9 bits (174), Expect = 4e-13
 Identities = 57/279 (20%), Positives = 98/279 (35%), Gaps = 56/279 (20%)

Query: 366 FQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGN 425
           F  +     NL   +P  +   + T   +LNL  N +   +    F     L+IL L  N
Sbjct: 45  FSKVICVRKNLR-EVPDGI--STNTR--LLNLHENQIQ-IIKVNSFKHLRHLEILQLSRN 98

Query: 426 QLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNN 485
            ++ +   +      L  L+L +N ++          S L+ L L++N            
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN------------ 146

Query: 486 VSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVT 545
                  I  + S  F+  +     L +            ELK L Y IS   F      
Sbjct: 147 ------PIESIPSYAFNR-IPSLRRLDL-----------GELKRLSY-ISEGAFE----- 182

Query: 546 VTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFG 605
                       + N+   ++ +  N    IP  +     L  L++S N L+   P SF 
Sbjct: 183 -----------GLSNL-RYLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHLSAIRPGSFQ 228

Query: 606 NLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
            L  ++ L +  + +         +L  L  +NL++NNL
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 560 NIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNN 619
           N F+ +     N    +P+ +    +   LN+  N +     +SF +L+ +E L LS N+
Sbjct: 43  NQFSKVICVRKNLRE-VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 620 LSGKIPAQ-LASLNFLSVLNLSYNNL 644
           +   I       L  L+ L L  N L
Sbjct: 100 IR-TIEIGAFNGLANLNTLELFDNRL 124

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 89.4 bits (222), Expect = 5e-19
 Identities = 72/432 (16%), Positives = 143/432 (33%), Gaps = 54/432 (12%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
           +   +   +Q        Q+ TL +LD   + +    +    K + L  LI +    + T
Sbjct: 22  SEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT--DMTGIEKLTGLTKLICTSNNIT-T 78

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
           L   +    NLT++       T      +  LT+L +++  +N  +     + ++  L Y
Sbjct: 79  LD--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKL--DVSQNPLLTY 131

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           L+ + N L      T  +   N  L  L  +         +     L TL  S     N+
Sbjct: 132 LNCARNTL------TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSF----NK 181

Query: 181 LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVI 240
           + E+    + +L  L+   N +   + ++   +   L  LD SSNK + + +        
Sbjct: 182 ITELDVSQNKLLNRLNCDTNNITK-LDLN---QNIQLTFLDCSSNKLTEIDVT------- 230

Query: 241 PILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLL 300
                 +QL+  D S N +  E+           L  L+     L+ +   ++   I   
Sbjct: 231 ----PLTQLTYFDCSVNPL-TELDVS----TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ 281

Query: 301 DLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESV 360
                +++      +T    +D      T +  D+     +  Y +  N  L   +  S 
Sbjct: 282 AEGCRKIKELDVTHNTQLYLLDCQAAGITEL--DLSQ-NPKLVYLYLNNTELT-ELDVSH 337

Query: 361 CKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNL----NGTLSDTIFPRNCG 416
              +  + L   N ++     +         L                TL++        
Sbjct: 338 NTKL--KSLSCVNAHIQ-DFSSV---GKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS 391

Query: 417 LQILDLGGNQLQ 428
             +LD  GN + 
Sbjct: 392 PDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.7 bits (210), Expect = 1e-17
 Identities = 71/425 (16%), Positives = 130/425 (30%), Gaps = 85/425 (20%)

Query: 69  ENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNL 128
           +N                 S   L  L  +D  ++  +  +  + K   L  L  + NN 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSNN- 75

Query: 129 SGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFE---------- 178
              I++    Q  NL  +    N L  ++   +  L  L  L    N+            
Sbjct: 76  ---ITTLDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLL 129

Query: 179 -------NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLR 231
                  N L EI    ++ L +LD   N+    + ++       L TLD S NK + L 
Sbjct: 130 TYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVT---PQTQLTTLDCSFNKITEL- 185

Query: 232 LASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEP 291
                      +     L+ L+   N I  ++        N  L FL+ S N L  + + 
Sbjct: 186 ----------DVSQNKLLNRLNCDTNNIT-KLDLN----QNIQLTFLDCSSNKLTEI-DV 229

Query: 292 YSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNS 351
             ++ +   D   N L        +  + +         I  D+ +      +       
Sbjct: 230 TPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEI--DLTHNTQLIYFQAEGCRK 287

Query: 352 LVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIF 411
           +              + LD+++N               T L +L+         +++   
Sbjct: 288 I--------------KELDVTHN---------------TQLYLLDCQAAG----ITELDL 314

Query: 412 PRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQ 471
            +N  L  L L   +L  +    +++   L+ L   N HI D     +G   +L      
Sbjct: 315 SQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDFSS--VGKIPALNNNFEA 369

Query: 472 SNNFS 476
                
Sbjct: 370 EGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 73.2 bits (180), Expect = 7e-14
 Identities = 61/390 (15%), Positives = 129/390 (33%), Gaps = 63/390 (16%)

Query: 142 NLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNR 201
           N    + +   +  +   S   L  L +L   N+   + +  I  ++   L  L  + N 
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MTGIEKLTG--LTKLICTSNN 75

Query: 202 LEGPVPISIIFELRNLYTLDLSSNKFS-----------RLRLASSKPRVIPILKNQSQLS 250
           +   + +S   +  NL  L   SNK +            L   ++K   + + +N   L+
Sbjct: 76  ITT-LDLS---QNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQN-PLLT 130

Query: 251 GLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGN 310
            L+ + N +       I    N  L  L+   N  ++  +    + +  LD   N++   
Sbjct: 131 YLNCARNTL-----TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL 185

Query: 311 IPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLD 370
               +   + ++   N+ T +  D+   +  T +   ++N L   I  +    +     D
Sbjct: 186 DVSQNKLLNRLNCDTNNITKL--DLNQNIQLT-FLDCSSNKLTE-IDVTPLTQL--TYFD 239

Query: 371 LSNNNLSGTIPACLIAQSETTLGVLNLGRNNL------------------NGTLSDTIFP 412
            S N L+      L   + + L  L+  + +L                     + +    
Sbjct: 240 CSVNPLT-----ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVT 294

Query: 413 RNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQS 472
            N  L +LD     +  +    L+    L  L L N  +++     + + + L+ L   +
Sbjct: 295 HNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVN 348

Query: 473 NNFSGHISCPRNNVSWPLLQIVDLASNKFS 502
            +     S        P L     A  +  
Sbjct: 349 AHIQD-FSSVGKI---PALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 45/317 (14%), Positives = 85/317 (26%), Gaps = 46/317 (14%)

Query: 17  ILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEV 76
           +     L  LD   N+ +  +  +    + L  L  S    +      +   + L  +  
Sbjct: 144 VSHNTQLTELDCHLNKKI--TKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNC 198

Query: 77  RRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTF 136
              N T      +    QL  +D SSN  +  I  +     L Y D S N L+    ST 
Sbjct: 199 DTNNITKL---DLNQNIQLTFLDCSSNKLT-EID-VTPLTQLTYFDCSVNPLTELDVSTL 253

Query: 137 WE---------QLVNL------NLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQL 181
            +          L+ +       L+              +     L  L          +
Sbjct: 254 SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQA----AGI 309

Query: 182 PEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIP 241
            E+    +  L  L L+   L   + +S       L +L   +                 
Sbjct: 310 TELDLSQNPKLVYLYLNNTELTE-LDVS---HNTKLKSLSCVNAHIQDF----------S 355

Query: 242 ILKNQSQLSGLDISNNQI---PGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIR 298
            +     L+    +  Q    P E           + + L+   N +        +    
Sbjct: 356 SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQA 415

Query: 299 LLDLHSNQLRGNIPHMS 315
              +    L  + P ++
Sbjct: 416 TNTITWENLSTDNPAVT 432

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 63/433 (14%), Positives = 130/433 (30%), Gaps = 98/433 (22%)

Query: 213 ELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGN 272
           +L  L +LD  ++  + +            ++  + L+ L  ++N I   +        N
Sbjct: 40  QLATLTSLDCHNSSITDM----------TGIEKLTGLTKLICTSNNI-TTLD----LSQN 84

Query: 273 GNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIP 332
            NL +L    N L +L +   ++ +  L+  +N+L       +   +Y++ + N  T I 
Sbjct: 85  TNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI- 142

Query: 333 ADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTL 392
            D+ +    TE      N  +  +  +    +    LD S N ++    +         L
Sbjct: 143 -DVSHNTQLTE-LDCHLNKKITKLDVTPQTQL--TTLDCSFNKITELDVSQN-----KLL 193

Query: 393 GVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHIS 452
             LN   NN+    +     +N  L  LD   N+L  +    +     L   D   N ++
Sbjct: 194 NRLNCDTNNI----TKLDLNQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLT 246

Query: 453 DNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLT 512
           +     +   S L  L     +    I    N      L        +    L       
Sbjct: 247 EL---DVSTLSKLTTLHCIQTDLL-EIDLTHN----TQLIYFQAEGCRKIKELDV----- 293

Query: 513 MEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNF 572
                       +    L  +                             T +D S N  
Sbjct: 294 ------------THNTQLYLLDCQA----------------------AGITELDLSQN-- 317

Query: 573 EGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLN 632
                        L  L +++  LT  +     +  +++SL     ++     + +  + 
Sbjct: 318 -----------PKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIP 361

Query: 633 FLSVLNLSYNNLV 645
            L+    +    +
Sbjct: 362 ALNNNFEAEGQTI 374

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.1 bits (216), Expect = 1e-18
 Identities = 50/291 (17%), Positives = 101/291 (34%), Gaps = 37/291 (12%)

Query: 21  PTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN 80
             +++LDLS N++   S  +  +  +L+ L+L+                          N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS-------------------------N 86

Query: 81  FTGPIPPSM-ANLTQLFHMDFSSNHFSGHIPS--LHKSRNLKYLDLSFNNLSGGISSTFW 137
               I     ++L  L H+D S N+ S ++ S       +L +L+L  N       ++ +
Sbjct: 87  GINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145

Query: 138 EQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLSNNQFENQLPEISNVSSSVLFDLD 196
             L  L ++ + +      I R  F  L  LE L +  +         S  S   +  L 
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL-QSYEPKSLKSIQNVSHLI 204

Query: 197 LSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISN 256
           L   +    +    +    ++  L+L          +         L  +     + I++
Sbjct: 205 LHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263

Query: 257 NQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEP--YSISSIRLLDLHSN 305
             +   +           L  L  S N L S+ +     ++S++ + LH+N
Sbjct: 264 ESLFQVMKLL---NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 70/321 (21%), Positives = 116/321 (36%), Gaps = 68/321 (21%)

Query: 117 NLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLSNN 175
            +K LDLS N ++  IS++  ++ VNL  ++L+ N +N +I    F  L +LE L LS N
Sbjct: 53  AVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 176 QFENQLPEISNVSSSV------LFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSR 229
                   +SN+SSS       L  L+L GN  +     S+   L  L  L + +     
Sbjct: 111 Y-------LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD--- 160

Query: 230 LRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQ 289
                 + +        + L  L+I  + +         +    N++ L L     + L 
Sbjct: 161 -TFTKIQRKD---FAGLTFLEELEIDASDLQ-SYEPKSLK-SIQNVSHLILHMKQHILLL 214

Query: 290 E--PYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFA 347
           E      SS+  L+L    L                   HF+ +     N          
Sbjct: 215 EIFVDVTSSVECLELRDTDL----------------DTFHFSELSTGETN---------- 248

Query: 348 ANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLS 407
                      S+ K   F+ + +++ +L   +         + L  L   RN L  ++ 
Sbjct: 249 -----------SLIKKFTFRNVKITDESLFQVMKL---LNQISGLLELEFSRNQLK-SVP 293

Query: 408 DTIFPRNCGLQILDLGGNQLQ 428
           D IF R   LQ + L  N   
Sbjct: 294 DGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.9 bits (192), Expect = 1e-15
 Identities = 50/242 (20%), Positives = 91/242 (37%), Gaps = 23/242 (9%)

Query: 1   TLDLSECGLQGKFPEKILQ-VPTLETLDLSENQLLQGSLPN--FPKNSSLRNLILSGTGF 57
            L L+  G+     E     + +LE LDLS N L   +L +  F   SSL  L L G  +
Sbjct: 80  ALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL--SNLSSSWFKPLSSLTFLNLLGNPY 136

Query: 58  SGTLPDSI-GNLENLTWVEVRRCNFTGPIPPSM-ANLTQLFHMDFSSNHFSGHIP--SLH 113
                 S+  +L  L  + V   +    I     A LT L  ++  ++         SL 
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLK 195

Query: 114 KSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNG----SIPRSLFL----LP 165
             +N+ +L L        +   F +   ++  + L    L+      +            
Sbjct: 196 SIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 166 NLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSN 225
               + +++      +  ++ +S   L +L+ S N+L+  VP  I   L +L  + L +N
Sbjct: 255 TFRNVKITDESLFQVMKLLNQISG--LLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

Query: 226 KF 227
            +
Sbjct: 312 PW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.5 bits (191), Expect = 1e-15
 Identities = 46/262 (17%), Positives = 92/262 (35%), Gaps = 33/262 (12%)

Query: 90  ANLTQLFHMDFSSNHFSGHIPS--LHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVL 147
             +  L   D S+N  + +I +  L +  NL+ L L+ N ++     +F   L +L  + 
Sbjct: 52  EAVKSL---DLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSF-SSLGSLEHLD 106

Query: 148 LSHNSLNGSIPRSLFL-LPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPV 206
           LS+N L  ++  S F  L +L  L L  N ++           + L  L +        +
Sbjct: 107 LSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 207 PISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNW 266
                  L  L  L++ ++        S        LK+   +S L +   Q    +   
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKS--------LKSIQNVSHLILHMKQHI-LLLEI 216

Query: 267 IWEVGNGNLNFLNLSHNLLVSLQEPYSISSI-----------RLLDLHSNQLRGNIPHMS 315
             +    ++  L L    L +      +S+            R + +    L   +  ++
Sbjct: 217 FVD-VTSSVECLELRDTDLDTFHFS-ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274

Query: 316 TNTS--YVDYSNNHFTFIPADI 335
             +    +++S N    +P  I
Sbjct: 275 QISGLLELEFSRNQLKSVPDGI 296

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 66.7 bits (163), Expect = 5e-12
 Identities = 41/215 (19%), Positives = 81/215 (37%), Gaps = 9/215 (4%)

Query: 295 SSIRLLDLHSNQLRGNIPHMS----TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANN 350
            +++ LDL +N++   I +       N   +  ++N    I  D  + +   E+   + N
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110

Query: 351 SLVGVIPESVCKGIYF-QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDT 409
            L   +  S  K +     L+L  N    T+    +    T L +L +G  +    +   
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 410 IFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLV 469
            F     L+ L++  + LQ   PKSL +   +  L L           ++   SS++ L 
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 470 LQSNNFSG-HISCPRNNVSWPLLQIVDLASNKFSG 503
           L+  +    H S      +  L++     + K + 
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 66.3 bits (162), Expect = 8e-12
 Identities = 60/323 (18%), Positives = 105/323 (32%), Gaps = 49/323 (15%)

Query: 301 DLHSNQLRGNIP-HMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPES 359
              S  L  +IP  ++     +D SNN  T+I           +     +N +   I E 
Sbjct: 37  KGSSGSLN-SIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEED 94

Query: 360 VCKGIY-FQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQ 418
               +   + LDLS N LS  + +       ++L  LNL  N        ++F     LQ
Sbjct: 95  SFSSLGSLEHLDLSYNYLS-NLSSSWFKPL-SSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 419 ILDLGGN-QLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSG 477
           IL +G       +  K  A    L+ L++  + +    P  L +  ++  L+L       
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK---- 208

Query: 478 HISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSN 537
                         Q + L         S + L               EL+     + + 
Sbjct: 209 --------------QHILLLEIFVDVTSSVECL---------------ELRDTD--LDTF 237

Query: 538 QFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALT 597
            F E+       G    L+K    F ++  +  +    + + + +   L  L  S N L 
Sbjct: 238 HFSEL-----STGETNSLIKKFT-FRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK 290

Query: 598 GSIPSSFGNLKQIESLDLSMNNL 620
                 F  L  ++ + L  N  
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 53/293 (18%), Positives = 103/293 (35%), Gaps = 30/293 (10%)

Query: 368 VLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQL 427
           +   S+ +L+ +IP+ L       +  L+L  N +   +S++   R   LQ L L  N +
Sbjct: 35  ICKGSSGSLN-SIPSGL----TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGI 88

Query: 428 QGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS-----GHISCP 482
             +   S ++   L+ LDL  N++S+    W    SSL  L L  N +         S  
Sbjct: 89  NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148

Query: 483 RNNVSWPLL---QIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGS-----ELKHLRYVI 534
                  +        +    F+G L+    L ++   +   +  S      + HL   +
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAG-LTFLEELEIDASDLQSYEPKSLKSIQNVSHLI--L 205

Query: 535 SSNQFYEV--GVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMS 592
              Q   +          VE + L+  ++ T   F  +         + +  +   + ++
Sbjct: 206 HMKQHILLLEIFVDVTSSVECLELRDTDLDT---FHFSELSTGETNSLIKKFTFRNVKIT 262

Query: 593 HNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ-LASLNFLSVLNLSYNNL 644
             +L   +      +  +  L+ S N L   +P      L  L  + L  N  
Sbjct: 263 DESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.2 bits (208), Expect = 6e-18
 Identities = 55/280 (19%), Positives = 96/280 (34%), Gaps = 32/280 (11%)

Query: 26  LDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDS---IGNLENLTWVEVRRCNFT 82
           L   + +   G   +  K+ SL+ L +        +      +  +  L  + +     T
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 83  GPIPPSMANLT--QLFHMDFSSNHFSGHIPSL-----HKSRNLKYLDLSFNNLSGGISST 135
           G  PP +   T   L  ++  +  ++     L          LK L ++    S   S  
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA-QAHSLNFSCE 167

Query: 136 FWEQLVNLNLVLLSHNSLNGSIPRSLFL----LPNLETLWLSNNQFENQLPEISNVSS-- 189
                  L+ + LS N   G       L     P L+ L L N   E      S +++  
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 190 SVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQL 249
             L  LDLS N L              L +L+LS     ++      P+ +P     ++L
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV------PKGLP-----AKL 276

Query: 250 SGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQ 289
           S LD+S N++    P+         +  L+L  N  +  +
Sbjct: 277 SVLDLSYNRL-DRNPS---PDELPQVGNLSLKGNPFLDSE 312

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.8 bits (207), Expect = 7e-18
 Identities = 50/259 (19%), Positives = 79/259 (30%), Gaps = 30/259 (11%)

Query: 17  ILQVPTLETLDLSENQLLQGSLPNFPKN---SSLRNLILSGTGFSGTLPDSIGNLENLTW 73
           I++  +L+ L +   ++    L    +    S L+ L L     +GT P  +        
Sbjct: 64  IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123

Query: 74  VEVRRCNFTGPIPPSMAN------LTQLFHMDFSSNHFSG-HIPSLHKSRNLKYLDLSFN 126
             +   N +     +            L  +  +  H        +     L  LDLS N
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183

Query: 127 NLSGGISSTF------WEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
              G            +  L  L L      + +G           L+ L LS+N   + 
Sbjct: 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243

Query: 181 LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVI 240
               S    S L  L+LS   L+  VP  +      L  LDLS N+  R           
Sbjct: 244 AGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL---PAKLSVLDLSYNRLDR----------N 289

Query: 241 PILKNQSQLSGLDISNNQI 259
           P      Q+  L +  N  
Sbjct: 290 PSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.9 bits (184), Expect = 7e-15
 Identities = 49/264 (18%), Positives = 81/264 (30%), Gaps = 25/264 (9%)

Query: 219 TLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFL 278
           +L L        R+ S        +   S L  L + N ++ G  P  + E    +LN L
Sbjct: 67  SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNIL 126

Query: 279 NLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNF 338
           NL +    +                   L      +      +  +  H      +    
Sbjct: 127 NLRNVSWATR---------------DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171

Query: 339 MSETEYFFAANNSLVGVIP--ESVCKGIY--FQVLDLSNNNL-SGTIPACLIAQSETTLG 393
                    ++N  +G      ++C   +   QVL L N  + + +     +A +   L 
Sbjct: 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231

Query: 394 VLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD 453
            L+L  N+L              L  L+L    L+ V     A    L VLDL  N +  
Sbjct: 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLDR 288

Query: 454 NFPCWLGNASSLQVLVLQSNNFSG 477
           N          +  L L+ N F  
Sbjct: 289 NPSPD--ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.2 bits (177), Expect = 5e-14
 Identities = 44/219 (20%), Positives = 72/219 (32%), Gaps = 22/219 (10%)

Query: 2   LDLSECGLQGKFPEKILQV--PTLETLDLSENQLLQ-----GSLPNFPKNSSLRNLILSG 54
           L L    + G  P  +L+   P L  L+L              L  +     L+ L ++ 
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW-LKPGLKVLSIAQ 158

Query: 55  TGFSGTLPDSIGNLENLTWVEVRRCNFTGPI-------PPSMANLTQLFHMDFSSNHFSG 107
                   + +     L+ +++      G         P     L  L   +      SG
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 108 HIPSL-HKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPN 166
              +L      L+ LDLS N+L     +   +    LN + LS   L   +P+ L     
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AK 275

Query: 167 LETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGP 205
           L  L LS N+ +   P    +    + +L L GN     
Sbjct: 276 LSVLDLSYNRLDR-NPSPDELPQ--VGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.1 bits (174), Expect = 2e-13
 Identities = 55/300 (18%), Positives = 87/300 (29%), Gaps = 45/300 (15%)

Query: 166 NLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSN 225
           +LE L    +   +       + S  L  L +   R+   +       LR L    L   
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA---LRVLGISGLQEL 100

Query: 226 KFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNG---NLNFLNLSH 282
               L +  + P  +        L+ L++ N         W+ E+       L  L+++ 
Sbjct: 101 TLENLEVTGTAPPPLLEATG-PDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQ 158

Query: 283 NLL--VSLQEPYSISSIRLLDLHSNQLRGNI-------PHMSTNTSYVDYSNNHFTFIPA 333
                 S ++     ++  LDL  N   G         P        +   N        
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 334 DIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLG 393
                        AA   L              Q LDLS+N+L             + L 
Sbjct: 219 VCSA-------LAAARVQL--------------QGLDLSHNSLRD-AAGAPSCDWPSQLN 256

Query: 394 VLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD 453
            LNL    L   +   +  +   L +LDL  N+L      S      +  L LK N   D
Sbjct: 257 SLNLSFTGLK-QVPKGLPAK---LSVLDLSYNRLDRNP--SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 62.6 bits (152), Expect = 8e-11
 Identities = 63/319 (19%), Positives = 99/319 (31%), Gaps = 33/319 (10%)

Query: 337 NFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLN 396
           NF      + +A N L     E    G   + L    +  +       I +S + L  L 
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLS-LKRLT 74

Query: 397 LGRNNLNGTLSDTI--FPRNCGLQILDLGGNQLQGVVPKSLANCNM--LQVLDLKNNHIS 452
           +    +   +           GLQ L L   ++ G  P  L       L +L+L+N   +
Sbjct: 75  VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134

Query: 453 DNFPCWLGNASSLQVLVLQ----SNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQK 508
                WL          L+    +   S + SC +    +P L  +DL+ N   G     
Sbjct: 135 T-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERG-- 190

Query: 509 WLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFS 568
                    +       +   L+ +   N   E     T  GV + L         +D S
Sbjct: 191 ---------LISALCPLKFPTLQVLALRNAGME-----TPSGVCSALAAARVQLQGLDLS 236

Query: 569 SNNFEGPIPEEMGRF-KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ 627
            N+           +   L +LN+S   L          L     LDLS N L    P  
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDR-NP-S 291

Query: 628 LASLNFLSVLNLSYNNLVG 646
              L  +  L+L  N  + 
Sbjct: 292 PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.7 bits (147), Expect = 4e-10
 Identities = 43/185 (23%), Positives = 62/185 (33%), Gaps = 33/185 (17%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQG----SLPNFPKNSSLRNLILSGTG 56
            L +++        E++   P L TLDLS+N  L      S     K  +L+ L L   G
Sbjct: 153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212

Query: 57  FSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSL--HK 114
                                    +G      A   QL  +D S N       +     
Sbjct: 213 ME---------------------TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 115 SRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSN 174
              L  L+LSF  L   +      +L  L+   LS+N L+   P     LP +  L L  
Sbjct: 252 PSQLNSLNLSFTGLK-QVPKGLPAKLSVLD---LSYNRLD-RNPSPDE-LPQVGNLSLKG 305

Query: 175 NQFEN 179
           N F +
Sbjct: 306 NPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.4 bits (136), Expect = 8e-09
 Identities = 44/244 (18%), Positives = 74/244 (30%), Gaps = 41/244 (16%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGT---LSDTIFPRNCGLQILDLG 423
           Q L L N  ++GT P  L+  +   L +LNL   +       L++       GL++L + 
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 424 GNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCW----LGNASSLQVLVLQSNNF-SGH 478
                    + +     L  LDL +N                  +LQVL L++    +  
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 479 ISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQ 538
             C     +   LQ +DL+ N                         S+L  L   +S   
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP-----------SQLNSLN--LSFTG 264

Query: 539 FYEVGVTVTVKGVETMLLKVPNIFTSI---DFSSNNFEGPIPEEMGRFKSLYALNMSHNA 595
             +V                  +   +   D S N  +   P        +  L++  N 
Sbjct: 265 LKQV---------------PKGLPAKLSVLDLSYNRLDR-NPSP-DELPQVGNLSLKGNP 307

Query: 596 LTGS 599
              S
Sbjct: 308 FLDS 311

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 53/276 (19%), Positives = 107/276 (38%), Gaps = 30/276 (10%)

Query: 51  ILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIP 110
           I   T  +   PD    L N   +   + N T  +    A+L  +  +       +  I 
Sbjct: 3   ITQPTAINVIFPDP--ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE 57

Query: 111 SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETL 170
            +    NL  L+L  N ++        + L  +  + LS N L      ++  L +++TL
Sbjct: 58  GVQYLNNLIGLELKDNQIT---DLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTL 112

Query: 171 WLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRL 230
            L++ Q  + +  ++ +S+  L  L L  N++     IS +  L NL  L + + + S  
Sbjct: 113 DLTSTQITD-VTPLAGLSN--LQVLYLDLNQITN---ISPLAGLTNLQYLSIGNAQVSD- 165

Query: 231 RLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQE 290
                    +  L N S+L+ L   +N+I  +I          NL  ++L +N +  +  
Sbjct: 166 ---------LTPLANLSKLTTLKADDNKIS-DISPLA---SLPNLIEVHLKNNQISDVSP 212

Query: 291 PYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNN 326
             + S++ ++ L +  +       + N    +    
Sbjct: 213 LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKG 248

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 64/319 (20%), Positives = 114/319 (35%), Gaps = 59/319 (18%)

Query: 2   LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTL 61
           +   +  +          +  + TL      +   ++      ++L  L L         
Sbjct: 24  IAAGKSNVTD--TVTQADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDN------ 73

Query: 62  PDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYL 121
              I +L  L                   NLT++  ++ S N    ++ ++   +++K L
Sbjct: 74  --QITDLAPL------------------KNLTKITELELSGNPLK-NVSAIAGLQSIKTL 112

Query: 122 DLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQL 181
           DL+   ++     T    L NL ++ L  N +    P  L  L NL+ L + N Q  + L
Sbjct: 113 DLTSTQIT---DVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-L 166

Query: 182 PEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIP 241
             ++N+S   L  L    N++     IS +  L NL  + L +N+ S           + 
Sbjct: 167 TPLANLSK--LTTLKADDNKISD---ISPLASLPNLIEVHLKNNQIS----------DVS 211

Query: 242 ILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLD 301
            L N S L  + ++N  I  +   +     N NL   N+      +   P +IS      
Sbjct: 212 PLANTSNLFIVTLTNQTITNQPVFY-----NNNLVVPNVVKGPSGAPIAPATISD--NGT 264

Query: 302 LHSNQLRGNIPHMSTNTSY 320
             S  L  N+     N SY
Sbjct: 265 YASPNLTWNLTSFINNVSY 283

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 51/290 (17%), Positives = 104/290 (35%), Gaps = 54/290 (18%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
           TL     G+     E +  +  L  L+L +NQ+    L      + +  L LSG      
Sbjct: 45  TLSAFGTGV--TTIEGVQYLNNLIGLELKDNQI--TDLAPLKNLTKITELELSGNPLK-- 98

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
              ++  +  L                   ++  L   D +S   +  +  L    NL+ 
Sbjct: 99  ---NVSAIAGLQ------------------SIKTL---DLTSTQITD-VTPLAGLSNLQV 133

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           L L  N ++   + +    L NL  + + +  ++   P  L  L  L TL   +N+  + 
Sbjct: 134 LYLDLNQIT---NISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD- 187

Query: 181 LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVI 240
           +  ++++ +  L ++ L  N++     +S +    NL+ + L++   +            
Sbjct: 188 ISPLASLPN--LIEVHLKNNQISD---VSPLANTSNLFIVTLTNQTITN----------Q 232

Query: 241 PILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQE 290
           P+  N + +    +         P  I +  NG     NL+ NL   +  
Sbjct: 233 PVFYNNNLVVPNVVKGPSGAPIAPATISD--NGTYASPNLTWNLTSFINN 280

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 60/332 (18%), Positives = 111/332 (33%), Gaps = 60/332 (18%)

Query: 179 NQLPEISNVSS-SVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKP 237
             +  I    + +    +    + +   V  +   +L  + TL       +         
Sbjct: 7   TAINVIFPDPALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTT-------- 55

Query: 238 RVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSI 297
             I  ++  + L GL++ +NQI  ++           +  L LS N L ++     + SI
Sbjct: 56  --IEGVQYLNNLIGLELKDNQI-TDLAPL---KNLTKITELELSGNPLKNVSAIAGLQSI 109

Query: 298 RLLDLHSNQLRGNIPHMS-TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVI 356
           + LDL S Q+    P    +N   +    N  T I               A   +L    
Sbjct: 110 KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP------------LAGLTNL---- 153

Query: 357 PESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCG 416
                     Q L + N  +S   P      + + L  L    N ++  +S         
Sbjct: 154 ----------QYLSIGNAQVSDLTP----LANLSKLTTLKADDNKIS-DISP--LASLPN 196

Query: 417 LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVL------VL 470
           L  + L  NQ+  V    LAN + L ++ L N  I++    +  N     V+       +
Sbjct: 197 LIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

Query: 471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFS 502
                S + +    N++W L   ++  S  F+
Sbjct: 255 APATISDNGTYASPNLTWNLTSFINNVSYTFN 286

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 39/280 (13%), Positives = 92/280 (32%), Gaps = 48/280 (17%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
             +    +N++ T+           +  L+     +    +         L  L+L  NQ
Sbjct: 22  IKIAAGKSNVTDTVTQA----DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDNQ 74

Query: 427 LQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNV 486
           +  + P  L N   +  L+L  N + +     +    S++ L L S      I+      
Sbjct: 75  ITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTST----QITDVTPLA 126

Query: 487 SWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV-ISSNQFYEVGVT 545
               LQ++ L  N+ +                      + L +L+Y+ I + Q  ++   
Sbjct: 127 GLSNLQVLYLDLNQIT-----------------NISPLAGLTNLQYLSIGNAQVSDL--- 166

Query: 546 VTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFG 605
                  T L  +  + T++    N         +    +L  +++ +N ++    S   
Sbjct: 167 -------TPLANLSKL-TTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDV--SPLA 214

Query: 606 NLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 645
           N   +  + L+   ++ +      +L   +V+       +
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 45/217 (20%), Positives = 77/217 (35%), Gaps = 17/217 (7%)

Query: 70  NLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPS--LHKSRNLKYLDLSFNN 127
               + +     +     S      L  +   SN  +  I +        L+ LDLS N 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91

Query: 128 LSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLSNNQFENQLPEISN 186
               +    +  L  L+ + L    L   +   LF  L  L+ L+L +N  +  LP+ + 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA-LPDDTF 149

Query: 187 VSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQ 246
                L  L L GNR+   VP      L +L  L L  N+ + +   +         ++ 
Sbjct: 150 RDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHA--------FRDL 200

Query: 247 SQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHN 283
            +L  L +  N +   +P          L +L L+ N
Sbjct: 201 GRLMTLYLFANNLS-ALPTEALA-PLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.7 bits (192), Expect = 6e-16
 Identities = 42/209 (20%), Positives = 73/209 (34%), Gaps = 9/209 (4%)

Query: 21  PTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN 80
              + + L  N++      +F    +L  L L     +     +   L  L  +++    
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 81  FTGPIPPSM-ANLTQLFHMDFSSNHFSGHIPS--LHKSRNLKYLDLSFNNLSGGISSTFW 137
               + P+    L +L  +          +          L+YL L  N L   +    +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149

Query: 138 EQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLSNNQFENQLPEISNVSSSVLFDLD 196
             L NL  + L  N ++ S+P   F  L +L+ L L  N+    +   +      L  L 
Sbjct: 150 RDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGRLMTLY 207

Query: 197 LSGNRLEGPVPISIIFELRNLYTLDLSSN 225
           L  N L   +P   +  LR L  L L+ N
Sbjct: 208 LFANNLSA-LPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 54/289 (18%), Positives = 89/289 (30%), Gaps = 64/289 (22%)

Query: 142 NLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNR 201
                      L  ++P  +      + ++L  N+  + +P  S  +   L  L L  N 
Sbjct: 12  PKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNV 67

Query: 202 LEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPG 261
           L   +  +    L  L  LDLS N     +L S  P          +L  L +    +  
Sbjct: 68  LAR-IDAAAFTGLALLEQLDLSDN----AQLRSVDPAT---FHGLGRLHTLHLDRCGL-Q 118

Query: 262 EIPNWIWEVGNGNLNFLNLSHNLLVSLQEP--YSISSIRLLDLHSNQLRGNIPHMSTNTS 319
           E+   ++  G   L +L L  N L +L +     + ++  L LH N++            
Sbjct: 119 ELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI------------ 165

Query: 320 YVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGT 379
                    + +P             F   +SL                L L  N ++  
Sbjct: 166 ---------SSVPERA----------FRGLHSL--------------DRLLLHQNRVA-H 191

Query: 380 IPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQ 428
           +      +    L  L L  NNL+  L          LQ L L  N   
Sbjct: 192 VHPHAF-RDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 51/281 (18%), Positives = 85/281 (30%), Gaps = 59/281 (20%)

Query: 195 LDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDI 254
                  L+  VP+ I         + L  N+ S +  AS         +    L+ L +
Sbjct: 16  TSCPQQGLQA-VPVGI---PAASQRIFLHGNRISHVPAAS--------FRACRNLTILWL 63

Query: 255 SNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHM 314
            +N +   I    +  G   L  L+LS N              +L  +      G     
Sbjct: 64  HSNVL-ARIDAAAFT-GLALLEQLDLSDNA-------------QLRSVDPATFHG----- 103

Query: 315 STNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNN 374
                 +         +   +          F    +L              Q L L +N
Sbjct: 104 LGRLHTLHLDRCGLQELGPGL----------FRGLAAL--------------QYLYLQDN 139

Query: 375 NLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKS 434
            L   +P     +    L  L L  N ++ ++ +  F     L  L L  N++  V P +
Sbjct: 140 ALQ-ALPDDTF-RDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 435 LANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNF 475
             +   L  L L  N++S      L    +LQ L L  N +
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 38/183 (20%), Positives = 58/183 (31%), Gaps = 9/183 (4%)

Query: 321 VDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTI 380
                     +P  I    + ++  F   N +  V   S        +L L +N L+  I
Sbjct: 16  TSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RI 71

Query: 381 PACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNM 440
            A         L  L+L  N    ++    F     L  L L    LQ + P        
Sbjct: 72  DAAAFTGL-ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 441 LQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNN-VSWPLLQIVDLASN 499
           LQ L L++N +         +  +L  L L  N  S   S P         L  + L  N
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS---SVPERAFRGLHSLDRLLLHQN 187

Query: 500 KFS 502
           + +
Sbjct: 188 RVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 49/242 (20%), Positives = 79/242 (32%), Gaps = 32/242 (13%)

Query: 409 TIFPRN--CGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQ 466
              P       Q + L GN++  V   S   C  L +L L +N ++          + L+
Sbjct: 24  QAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 467 VLVLQSNNFSGHISCPRNNVSWPL--LQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSG 524
            L L  N     +          L  L  + L        L       +           
Sbjct: 84  QLDLSDNA---QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGL----------- 128

Query: 525 SELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEM-GRF 583
           + L++L   +  N    +         +     + N+ T +    N     +PE      
Sbjct: 129 AALQYLY--LQDNALQALP--------DDTFRDLGNL-THLFLHGNRISS-VPERAFRGL 176

Query: 584 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 643
            SL  L +  N +    P +F +L ++ +L L  NNLS      LA L  L  L L+ N 
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

Query: 644 LV 645
            V
Sbjct: 237 WV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 583 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ-LASLNFLSVLNLSY 641
             +   + +  N ++    +SF   + +  L L  N L+ +I A     L  L  L+LS 
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89

Query: 642 NNLVGKIP 649
           N  +  + 
Sbjct: 90  NAQLRSVD 97

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 79.5 bits (196), Expect = 3e-16
 Identities = 61/333 (18%), Positives = 111/333 (33%), Gaps = 38/333 (11%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPN--FPKNSSLRNLILSGTGFS 58
                E  +  + P  +        L     +L    +    F     L  + +S     
Sbjct: 13  VFLCQESKVT-EIPSDLP--RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 59  GTLPDSI-GNLENLTWVEVRRCNFTGPIPPSM-ANLTQLFHMDFSSNHFSGHIPSLHK-- 114
             +   +  NL  L  + + + N    I P    NL  L ++  S+     H+P +HK  
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIH 126

Query: 115 SRNLKYLDLSFNNLSGGISS-TFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLS 173
           S     LD+  N     I   +F        ++ L+ N +   I  S F    L+ L LS
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLS 185

Query: 174 NNQFENQLPEISN---VSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRL 230
           +N   N L E+ N     +S    LD+S  R+   +P   +  L+ L      + K    
Sbjct: 186 DN---NNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---- 237

Query: 231 RLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQE 290
                    +P L+    L    ++         NW  +     ++ L+   N  +  QE
Sbjct: 238 --------KLPTLEKLVALMEASLTYPSHCCAFANWRRQ-----ISELHPICNKSILRQE 284

Query: 291 PYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDY 323
              ++  R       +   +      + +Y ++
Sbjct: 285 VDYMTQARGQRSSLAEDNESSYSRGFDMTYTEF 317

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.6 bits (147), Expect = 5e-10
 Identities = 30/223 (13%), Positives = 69/223 (30%), Gaps = 16/223 (7%)

Query: 258 QIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEP--YSISSIRLLDLHSNQLRGNIP--- 312
           +IP ++P         N   L      L  +Q+        +  +++  N +   I    
Sbjct: 23  EIPSDLPR--------NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74

Query: 313 --HMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLD 370
             ++           N+  +I  +    +   +Y   +N  +  +        +   +LD
Sbjct: 75  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 134

Query: 371 LSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGV 430
           + +N    TI             +L L +N +   + ++ F      ++     N L+ +
Sbjct: 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEEL 193

Query: 431 VPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSN 473
                   +   +LD+    I       L N   L+     + 
Sbjct: 194 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 49/279 (17%), Positives = 89/279 (31%), Gaps = 58/279 (20%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDL-GGN 425
             L      L   I     +     L  + + +N++   +   +F     L  + +   N
Sbjct: 33  IELRFVLTKLR-VIQKGAFSGF-GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 426 QLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNN 485
            L  + P++  N   LQ L + N  I         ++    +L +Q N            
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI----------- 139

Query: 486 VSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVT 545
                  I  +  N F G       L+             E   L   ++ N   E+  +
Sbjct: 140 ------NIHTIERNSFVG-------LS------------FESVILW--LNKNGIQEIHNS 172

Query: 546 V-TVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPS-S 603
                 ++ + L   N    +   ++ F G              L++S   +  S+PS  
Sbjct: 173 AFNGTQLDELNLSDNNNLEEL--PNDVFHG--------ASGPVILDISRTRIH-SLPSYG 221

Query: 604 FGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 642
             NLK++ +      NL  K+P  L  L  L   +L+Y 
Sbjct: 222 LENLKKLRARST--YNLK-KLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 30/234 (12%), Positives = 68/234 (29%), Gaps = 55/234 (23%)

Query: 416 GLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCW-LGNASSLQVLVLQSNN 474
               L     +L+ +   + +    L+ +++  N + +        N   L  + ++  N
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 475 FSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV- 533
                             ++ +    F                         L +L+Y+ 
Sbjct: 91  -----------------NLLYINPEAFQN-----------------------LPNLQYLL 110

Query: 534 ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEM--GRFKSLYALNM 591
           IS+     +     +  ++ +LL         D   N     I      G       L +
Sbjct: 111 ISNTGIKHLPDVHKIHSLQKVLL---------DIQDNINIHTIERNSFVGLSFESVILWL 161

Query: 592 SHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ-LASLNFLSVLNLSYNNL 644
           + N +     S+F   +  E      NNL  ++P       +   +L++S   +
Sbjct: 162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRI 214

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 80.2 bits (197), Expect = 6e-16
 Identities = 48/247 (19%), Positives = 95/247 (38%), Gaps = 14/247 (5%)

Query: 4   LSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKN-SSLRNLILSGTGFSGTLP 62
           +        +         L   +LS  +     L +  ++   L+ L         T+ 
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKSTV--LQSELESCKELQELEPENKWCLLTII 389

Query: 63  DSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLD 122
             +  L+ L + +     F+     ++  +   +  D  S     +     +  +++ L 
Sbjct: 390 LLMRALDPLLYEKETLQYFSTLK--AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLH 447

Query: 123 LSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLP 182
           L+  +L+        EQL+ +  + LSHN L  ++P +L  L  LE L  S+N  EN + 
Sbjct: 448 LAHKDLT---VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD 502

Query: 183 EISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPI 242
            ++N+    L +L L  NRL+    I  +     L  L+L  N     +    + R+  +
Sbjct: 503 GVANLPR--LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC--QEEGIQERLAEM 558

Query: 243 LKNQSQL 249
           L + S +
Sbjct: 559 LPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.9 bits (147), Expect = 8e-10
 Identities = 43/288 (14%), Positives = 89/288 (30%), Gaps = 8/288 (2%)

Query: 358 ESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGL 417
           E         V                +     TL ++           +     R   +
Sbjct: 240 EPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHV 299

Query: 418 QILDLGGNQLQGVVPKSLANCNMLQVLDLKN-NHISDNFPCWLGNASSLQVLVLQSNNFS 476
            + DL    L   +P+             K    + D   CW  ++++ + L       S
Sbjct: 300 WLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL--FRCELS 357

Query: 477 GHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISS 536
              S    +      ++ +L        L+   L+   + ++ E ++      L+ V   
Sbjct: 358 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 417

Query: 537 NQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNAL 596
              Y   +        ++L         +  +  +    +   + +   +  L++SHN L
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRL 475

Query: 597 TGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
             ++P +   L+ +E L  S N L   +   +A+L  L  L L  N L
Sbjct: 476 R-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRL 520

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.1 bits (137), Expect = 1e-08
 Identities = 48/309 (15%), Positives = 92/309 (29%), Gaps = 12/309 (3%)

Query: 146 VLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGP 205
           V      L+    R L +   + TL L  ++    +   +    +    + L    L   
Sbjct: 250 VSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWL--CDLPAA 307

Query: 206 VPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPN 265
                + +         S ++   + L               QL   ++S  +    + +
Sbjct: 308 SLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQS 366

Query: 266 WIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSN 325
            +                LL  +    ++  +                     +Y+D   
Sbjct: 367 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426

Query: 326 NHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLI 385
           + F    + +    ++      A+  L  +        +    LDLS+N L   +P  L 
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLV--THLDLSHNRLR-ALPPALA 483

Query: 386 AQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGV-VPKSLANCNMLQVL 444
           A     L VL    N L   +          LQ L L  N+LQ     + L +C  L +L
Sbjct: 484 AL--RCLEVLQASDNALE-NVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538

Query: 445 DLKNNHISD 453
           +L+ N +  
Sbjct: 539 NLQGNSLCQ 547

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 46/312 (14%), Positives = 90/312 (28%), Gaps = 37/312 (11%)

Query: 192 LFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSG 251
           +  L L  +     V             + L     + L     +     I         
Sbjct: 271 MGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKE 330

Query: 252 LDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQ-EPYSISSIRLLDLHSNQLRGN 310
             +  ++      +   +     L    LS      LQ E  S   ++ L+  +      
Sbjct: 331 CVLLKDRPECWCRDSATDE---QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLT 387

Query: 311 IPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLD 370
           I  +      + Y      +             Y     +  +        +    +VL 
Sbjct: 388 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLH 447

Query: 371 LSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGV 430
           L++ +L+  +             +  L                   +  LDL  N+L+  
Sbjct: 448 LAHKDLT-VLC-----------HLEQLLL-----------------VTHLDLSHNRLR-A 477

Query: 431 VPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPL 490
           +P +LA    L+VL   +N + +     + N   LQ L+L +N      +  +  VS P 
Sbjct: 478 LPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQ-QSAAIQPLVSCPR 534

Query: 491 LQIVDLASNKFS 502
           L +++L  N   
Sbjct: 535 LVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.7 bits (123), Expect = 6e-07
 Identities = 29/246 (11%), Positives = 70/246 (28%), Gaps = 24/246 (9%)

Query: 91  NLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSH 150
                       +              L   +LS    +         +L +   +    
Sbjct: 324 GSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQ-----SELESCKELQELE 378

Query: 151 NSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISI 210
                 +   + L+  L+ L       +     +  V       LD   ++      +  
Sbjct: 379 PENKWCLLTIILLMRALDPLLYEKETLQY-FSTLKAVDPMRAAYLDDLRSKFLLENSVLK 437

Query: 211 IFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEV 270
           +        L L+    +           +  L+    ++ LD+S+N++   +P  +   
Sbjct: 438 MEYADVRV-LHLAHKDLTV----------LCHLEQLLLVTHLDLSHNRL-RALPPALAA- 484

Query: 271 GNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRG--NIPHMSTNTS--YVDYSNN 326
               L  L  S N L ++    ++  ++ L L +N+L+    I  + +      ++   N
Sbjct: 485 -LRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

Query: 327 HFTFIP 332
                 
Sbjct: 544 SLCQEE 549

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.8 bits (182), Expect = 2e-15
 Identities = 32/189 (16%), Positives = 73/189 (38%), Gaps = 10/189 (5%)

Query: 40  NFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMD 99
           N P +S+ +  +    G S T   +   + +LT++ +   N T      +     +  + 
Sbjct: 16  NIP-DSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLT 72

Query: 100 FSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPR 159
            ++ H + +   +    NL+ L +   +++          L +L L+ +SH++ + SI  
Sbjct: 73  INNIHAT-NYNPISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSILT 130

Query: 160 SLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYT 219
            +  LP + ++ LS N     +  +  +    L  L++  + +        I +   L  
Sbjct: 131 KINTLPKVNSIDLSYNGAITDIMPLKTLPE--LKSLNIQFDGVHD---YRGIEDFPKLNQ 185

Query: 220 LDLSSNKFS 228
           L   S    
Sbjct: 186 LYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.6 bits (171), Expect = 9e-14
 Identities = 27/176 (15%), Positives = 71/176 (40%), Gaps = 19/176 (10%)

Query: 88  SMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVL 147
           + A +  L ++  ++ + +  +  +  + N+K L ++  + +   +      L NL  + 
Sbjct: 39  TEAQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLR 94

Query: 148 LSHNSLNGSIPRSLFLLPNLETLWLSNNQFEN-QLPEISNVSSSVLFDLDLSGNRLEGPV 206
           +    +      +L  L +L  L +S++  ++  L +I+ +    +  +DLS N      
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK--VNSIDLSYNGAITD- 151

Query: 207 PISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGE 262
            I  +  L  L +L++  +                 +++  +L+ L   +  I G+
Sbjct: 152 -IMPLKTLPELKSLNIQFDGVHD----------YRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 27/161 (16%), Positives = 62/161 (38%), Gaps = 9/161 (5%)

Query: 17  ILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEV 76
             Q+ +L  + L+   +    L       ++++L ++    +   P  I  L NL  + +
Sbjct: 40  EAQMNSLTYITLANINV--TDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRI 95

Query: 77  RRCNFTGPIPPSMANLTQLFHMDFSSNHFSG-HIPSLHKSRNLKYLDLSFNNLSGGISST 135
              + T    P+++ LT L  +D S +      +  ++    +  +DLS+N     I   
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL 155

Query: 136 FWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQ 176
             + L  L  + +  + ++      +   P L  L+  +  
Sbjct: 156 --KTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 22/174 (12%)

Query: 117 NLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQ 176
           +L Y+ L+  N++     T  E   N+  + +++       P  +  L NLE L +    
Sbjct: 45  SLTYITLANINVT---DLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKD 99

Query: 177 FEN-QLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASS 235
             + ++P +S ++S  L  LD+S +  +    ++ I  L  + ++DLS N          
Sbjct: 100 VTSDKIPNLSGLTS--LTLLDISHSAHDD-SILTKINTLPKVNSIDLSYN---------G 147

Query: 236 KPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQ 289
               I  LK   +L  L+I  + +               LN L      +   +
Sbjct: 148 AITDIMPLKTLPELKSLNIQFDGVHDYRGIE----DFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 563 TSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG 622
             +     +        +    SL  L++SH+A   SI +    L ++ S+DLS N    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 623 KIPAQLASLNFLSVLNLSYNNL 644
            I   L +L  L  LN+ ++ +
Sbjct: 151 DIMP-LKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 563 TSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG 622
             +  ++ +     P  +    +L  L +    +T     +   L  +  LD+S +    
Sbjct: 69  KDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 623 KIPAQLASLNFLSVLNLSYNNLVGKI 648
            I  ++ +L  ++ ++LSYN  +  I
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 16/136 (11%), Positives = 43/136 (31%), Gaps = 10/136 (7%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
             + L+N N++         +    +  L +   +               L+ L + G  
Sbjct: 47  TYITLANINVTDLTGI----EYAHNIKDLTINNIHATNY---NPISGLSNLERLRIMGKD 99

Query: 427 LQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNV 486
           +      +L+    L +LD+ ++   D+    +     +  + L  N     I   +   
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP 159

Query: 487 SWPLLQIVDLASNKFS 502
               L+ +++  +   
Sbjct: 160 E---LKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 12/82 (14%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 563 TSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG 622
           T +D S +  +  I  ++     + ++++S+N     I      L +++SL++  + +  
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD 173

Query: 623 KIPAQLASLNFLSVLNLSYNNL 644
                +     L+ L      +
Sbjct: 174 YRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 17/111 (15%), Positives = 41/111 (36%), Gaps = 6/111 (5%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
           + L +   +++      L     T+L +L++  +  + ++   I      +  +DL  N 
Sbjct: 91  ERLRIMGKDVTSDKIPNL--SGLTSLTLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNG 147

Query: 427 LQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSG 477
               +   L     L+ L+++ + + D     + +   L  L   S    G
Sbjct: 148 AITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 77.7 bits (192), Expect = 3e-15
 Identities = 63/392 (16%), Positives = 110/392 (28%), Gaps = 97/392 (24%)

Query: 115 SRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLN----GSIPRSLFLLPNLETL 170
           S +++ LD+    LS    +     L    +V L    L       I  +L + P L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 171 WLSNNQFENQ----LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFEL----RNLYTLDL 222
            L +N+  +     + +     S  +  L L    L       ++         L  L L
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL-TGAGCGVLSSTLRTLPTLQELHL 120

Query: 223 SSNKFSR---LRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLN 279
           S N         L         +L  Q +L  L +    +       +  V         
Sbjct: 121 SDNLLGDAGLQLLCEG------LLDPQCRLEKLQLEYCSLSAASCEPLASV--------- 165

Query: 280 LSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFM 339
           L                 + L + +N                             I    
Sbjct: 166 LRAK-----------PDFKELTVSNND----------------------------INEAG 186

Query: 340 SETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLS--GTIPACLIAQSETTLGVLNL 397
                       L   + +S C+    + L L +  ++       C I  S+ +L  L L
Sbjct: 187 VR---------VLCQGLKDSPCQ---LEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 398 GRNNLNGT----LSDTIFPRNCGLQILDLGGNQLQGV----VPKSLANCNMLQVLDLKNN 449
           G N L       L   +   +  L+ L +    +       + + L     L+ L L  N
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294

Query: 450 HISDNFPCWLGNA-----SSLQVLVLQSNNFS 476
            + D     L          L+ L ++S +F+
Sbjct: 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 69.2 bits (170), Expect = 1e-12
 Identities = 83/480 (17%), Positives = 153/480 (31%), Gaps = 90/480 (18%)

Query: 22  TLETLDLSENQLLQGSLPNF-PKNSSLRNLILSGTGFSGT----LPDSIGNLENLTWVEV 76
            +++LD+   +L         P     + + L   G +      +  ++     L  + +
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 77  RRCNFTGPIPPSMANL-----TQLFHMDFSSNHFSGH-----IPSLHKSRNLKYLDLSFN 126
           R           +         ++  +   +   +G        +L     L+ L LS N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 127 NLSGG----ISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLL----PNLETLWLSNNQFE 178
            L       +     +    L  + L + SL+ +    L  +    P+ + L +SNN   
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 179 NQ----LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELR---NLYTLDLSSNKFSR-- 229
                 L +    S   L  L L    +       +   +    +L  L L SNK     
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243

Query: 230 -LRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEV--GNGNLNFLNLSHNLLV 286
              L         +L   S+L  L I    I  +    +  V     +L  L+L+ N   
Sbjct: 244 MAELCPG------LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN--- 294

Query: 287 SLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPA-DIGNFMSETEYF 345
                       L D  +  L   +         +   +  FT        + ++     
Sbjct: 295 -----------ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA----- 338

Query: 346 FAANNSLVGVIPESVCKGIYFQVLDLSNNNL--SGTIPAC-LIAQSETTLGVLNLGRNNL 402
              N  L                L +SNN L  +G    C  + Q  + L VL L   ++
Sbjct: 339 --QNRFL--------------LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

Query: 403 N----GTLSDTIFPRNCGLQILDLGGNQL--QGVVP--KSLANCN-MLQVLDLKNNHISD 453
           +     +L+ T+   N  L+ LDL  N L   G++   +S+     +L+ L L + + S+
Sbjct: 383 SDSSCSSLAATL-LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 60/361 (16%), Positives = 112/361 (31%), Gaps = 64/361 (17%)

Query: 1   TLDLSECGLQGKFPEKILQV----PTLETLDLSENQL-------LQGSLPNFPKNSSLRN 49
            + L +CGL     + I       P L  L+L  N+L       +   L     +  ++ 
Sbjct: 32  VVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT--PSCKIQK 89

Query: 50  LILSGTGFSGT----LPDSIGNLENLTWVEVRRCNFTGPIPPSMA-----NLTQLFHMDF 100
           L L     +G     L  ++  L  L  + +            +         +L  +  
Sbjct: 90  LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL 149

Query: 101 SSNHFSGH-----IPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVL----LSHN 151
                S          L    + K L +S N+++        + L +    L    L   
Sbjct: 150 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209

Query: 152 SLN----GSIPRSLFLLPNLETLWLSNNQFENQ----LPEISNVSSSVLFDLDLSGNRL- 202
            +       +   +    +L  L L +N+  +     L       SS L  L +    + 
Sbjct: 210 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269

Query: 203 -EGPVPIS-IIFELRNLYTLDLSSNKFS---RLRLASSKPRVIPILKNQSQLSGLDISNN 257
            +G   +  ++    +L  L L+ N+        L  +      +L+   QL  L + + 
Sbjct: 270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET------LLEPGCQLESLWVKSC 323

Query: 258 QIPGEIPNWIWEV--GNGNLNFLNLSHN---------LLVSLQEPYSISSIRLLDLHSNQ 306
                  +    V   N  L  L +S+N         L   L +P   S +R+L L    
Sbjct: 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG--SVLRVLWLADCD 381

Query: 307 L 307
           +
Sbjct: 382 V 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 76/482 (15%), Positives = 145/482 (30%), Gaps = 104/482 (21%)

Query: 1   TLDLSECGLQGKFPEKILQV-PTLETLDLSENQLLQGSLPNF----PKNSSLRNLILSGT 55
           +LD+    L      ++L +    + + L +  L +    +       N +L  L L   
Sbjct: 7   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 66

Query: 56  GFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGH-----IP 110
                    +          ++  +             ++  +   +   +G        
Sbjct: 67  ELGDVGVHCVLQG-------LQTPS------------CKIQKLSLQNCCLTGAGCGVLSS 107

Query: 111 SLHKSRNLKYLDLSFNNLSGG----ISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLL-- 164
           +L     L+ L LS N L       +     +    L  + L + SL+ +    L  +  
Sbjct: 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167

Query: 165 --PNLETLWLSNNQFENQ----LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELR--- 215
             P+ + L +SNN         L +    S   L  L L    +       +   +    
Sbjct: 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA 227

Query: 216 NLYTLDLSSNKFSR---LRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEV-- 270
           +L  L L SNK        L         +L   S+L  L I    I  +    +  V  
Sbjct: 228 SLRELALGSNKLGDVGMAELCPG------LLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 271 GNGNLNFLNLSHN---------LLVSLQEPYSISSIRLLDLHSNQLR-------GNIPHM 314
              +L  L+L+ N         L  +L EP     +  L + S            ++   
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPG--CQLESLWVKSCSFTAACCSHFSSVLAQ 339

Query: 315 STNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNN 374
           +     +  SNN        + +         A    L   + +        +VL L++ 
Sbjct: 340 NRFLLELQISNNR-------LED---------AGVRELCQGLGQPGSV---LRVLWLADC 380

Query: 375 NLSGTIPACLIAQSE-----TTLGVLNLGRNNLNGT----LSDTIFPRNCGLQILDLGGN 425
           ++S    +   + +       +L  L+L  N L       L +++    C L+ L L   
Sbjct: 381 DVS---DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437

Query: 426 QL 427
             
Sbjct: 438 YW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.3 bits (139), Expect = 8e-09
 Identities = 72/465 (15%), Positives = 142/465 (30%), Gaps = 92/465 (19%)

Query: 215 RNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEV--GN 272
            ++ +LD+   + S  R A        +L    Q   + + +  +       I      N
Sbjct: 3   LDIQSLDIQCEELSDARWAE-------LLPLLQQCQVVRLDDCGLTEARCKDISSALRVN 55

Query: 273 GNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIP 332
             L  LNL  N L           +  +      L+      S     +   N   T   
Sbjct: 56  PALAELNLRSNEL-------GDVGVHCV---LQGLQ----TPSCKIQKLSLQNCCLT--G 99

Query: 333 ADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGT---IPACLIAQSE 389
           A  G   S          +L              Q L LS+N L      +    +   +
Sbjct: 100 AGCGVLSST----LRTLPTL--------------QELHLSDNLLGDAGLQLLCEGLLDPQ 141

Query: 390 TTLGVLNLGRNNLNGTLSDTIFP---RNCGLQILDLGGNQLQGVVPKSLA-----NCNML 441
             L  L L   +L+    + +          + L +  N +     + L      +   L
Sbjct: 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL 201

Query: 442 QVLDLKNNHISDNFPCWLGNA----SSLQVLVLQSNNFSG----HISCPRNNVSWPLLQI 493
           + L L++  ++ +    L       +SL+ L L SN         +     + S  L + 
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL-RT 260

Query: 494 VDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV-ISSNQFYEVGVTVTVKGVE 552
           + +     +            +      +     + L+ + ++ N+  + G     + + 
Sbjct: 261 LWIWECGIT-----------AKGCGDLCRVLRAKESLKELSLAGNELGDEGA----RLLC 305

Query: 553 TMLLKVPNIFTSIDFSSNNFEG----PIPEEMGRFKSLYALNMSHNALTGSIPSSFG--- 605
             LL+      S+   S +F           + + + L  L +S+N L  +         
Sbjct: 306 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365

Query: 606 --NLKQIESLDLSMNNLSGK----IPAQLASLNFLSVLNLSYNNL 644
                 +  L L+  ++S      + A L + + L  L+LS N L
Sbjct: 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 76.8 bits (189), Expect = 3e-15
 Identities = 51/170 (30%), Positives = 73/170 (42%), Gaps = 9/170 (5%)

Query: 115 SRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLS 173
                 LDLS NNLS   +     +L NL+ +LLSHN LN  I    F+ +PNL  L LS
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96

Query: 174 NNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLA 233
           +N     L E        L  L L  N +   V  +   ++  L  L LS N+ SR    
Sbjct: 97  SNHLHT-LDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFP-- 152

Query: 234 SSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHN 283
                +I       +L  LD+S+N++       + ++     N L L +N
Sbjct: 153 ---VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 43/190 (22%), Positives = 67/190 (35%), Gaps = 35/190 (18%)

Query: 21  PTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN 80
                LDLS N L           S LR    +    +         L NL  + +   +
Sbjct: 39  SYTALLDLSHNNL-----------SRLR----AEWTPTR--------LTNLHSLLLSHNH 75

Query: 81  FTGPIPPSM-ANLTQLFHMDFSSNHFSGHIPS--LHKSRNLKYLDLSFNNLSGGISSTFW 137
               I       +  L ++D SSNH    +        + L+ L L  N++     + F 
Sbjct: 76  LNF-ISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAF- 132

Query: 138 EQLVNLNLVLLSHNSLNGSIPRSLFL----LPNLETLWLSNNQFENQLPE-ISNVSSSVL 192
           E +  L  + LS N ++   P  L      LP L  L LS+N+ +      +  + + V 
Sbjct: 133 EDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

Query: 193 FDLDLSGNRL 202
             L L  N L
Sbjct: 192 NGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 48/215 (22%), Positives = 76/215 (35%), Gaps = 41/215 (19%)

Query: 195 LDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDI 254
           L  S  +L   VP S+         LDLS N  SRLR   +           + L  L +
Sbjct: 23  LSCSKQQLPN-VPQSL---PSYTALLDLSHNNLSRLRAEWT-------PTRLTNLHSLLL 71

Query: 255 SNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEP--YSISSIRLLDLHSNQLRGNIP 312
           S+N +   I +  +     NL +L+LS N L +L E     + ++ +L L++N +   + 
Sbjct: 72  SHNHL-NFISSEAFV-PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVD 128

Query: 313 HMS----TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQV 368
             +         +  S N  +  P ++              N L  +            +
Sbjct: 129 RNAFEDMAQLQKLYLSQNQISRFPVEL----------IKDGNKLPKL-----------ML 167

Query: 369 LDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLN 403
           LDLS+N L       L          L L  N L 
Sbjct: 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 41/184 (22%), Positives = 74/184 (40%), Gaps = 13/184 (7%)

Query: 298 RLLDLHSNQLRGNIP-HMSTNTSYVDYSNNHFTFIPADIGNF--MSETEYFFAANNSLVG 354
            +L     QL  N+P  + + T+ +D S+N+ + + A+      ++       ++N L  
Sbjct: 21  NILSCSKQQLP-NVPQSLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHL-N 77

Query: 355 VIPESVCKGIYF-QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPR 413
            I       +   + LDLS+N+L  T+    +      L VL L  N++   +    F  
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLH-TLDE-FLFSDLQALEVLLLYNNHIV-VVDRNAFED 134

Query: 414 NCGLQILDLGGNQLQGVVPKSLANCN---MLQVLDLKNNHISDNFPCWLGNASSLQVLVL 470
              LQ L L  NQ+     + + + N    L +LDL +N +       L    +     L
Sbjct: 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

Query: 471 QSNN 474
             +N
Sbjct: 195 YLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 9/97 (9%)

Query: 555 LLKVP-NIFTSI---DFSSNNFEGPIPEEM-GRFKSLYALNMSHNALTGSIPS-SFGNLK 608
           L  VP ++ +     D S NN      E    R  +L++L +SHN L   I S +F  + 
Sbjct: 30  LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88

Query: 609 QIESLDLSMNNLSGKIPAQ-LASLNFLSVLNLSYNNL 644
            +  LDLS N+L   +     + L  L VL L  N++
Sbjct: 89  NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHI 124

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 31/136 (22%), Positives = 48/136 (35%), Gaps = 14/136 (10%)

Query: 1   TLDLSECGLQGKFPEKIL-QVPTLETLDLSENQLLQGSLPN--FPKNSSLRNLILSGTGF 57
           +L LS   L      +    VP L  LDLS N L   +L    F    +L  L+L     
Sbjct: 68  SLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHL--HTLDEFLFSDLQALEVLLLYNNHI 124

Query: 58  SGTLPDSIGNLENLTWVEVRRCNFTGPIPP----SMANLTQLFHMDFSSNHFSGHIP--S 111
                ++  ++  L  + + +   +   P         L +L  +D SSN     +P   
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTD 182

Query: 112 LHKSRNLKYLDLSFNN 127
           L K        L  +N
Sbjct: 183 LQKLPAWVKNGLYLHN 198

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 47/177 (26%), Positives = 69/177 (38%), Gaps = 10/177 (5%)

Query: 2   LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTL 61
           L LSE  L       ++    L  L+L   +L    L        L  L LS      +L
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-SL 92

Query: 62  PDSIGNLENLTWVEVRRCNFTGPIPPSM-ANLTQLFHMDFSSNHFSGHIPS--LHKSRNL 118
           P     L  LT ++V     T  +P      L +L  +    N     +P   L  +  L
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKL 150

Query: 119 KYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNN 175
           + L L+ NNL+  + +     L NL+ +LL  NSL  +IP+  F    L   +L  N
Sbjct: 151 EKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 47/183 (25%), Positives = 65/183 (35%), Gaps = 11/183 (6%)

Query: 21  PTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN 80
                L LSEN L   SL      + L  L L     +  L    G L  L  +++    
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQ 88

Query: 81  FTGPIPPSMANLTQLFHMDFSSNHFSGHIPS--LHKSRNLKYLDLSFNNLSGGISSTFWE 138
               +P     L  L  +D S N  +  +P   L     L+ L L  N L          
Sbjct: 89  LQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLL-T 145

Query: 139 QLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLSNNQFENQLPEISNVSSSVLFDLDL 197
               L  + L++N+L   +P  L   L NL+TL L  N     +P+    S   L    L
Sbjct: 146 PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHL-LPFAFL 202

Query: 198 SGN 200
            GN
Sbjct: 203 HGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 49/195 (25%), Positives = 72/195 (36%), Gaps = 21/195 (10%)

Query: 90  ANLTQLFHMDFSSNHFSGHIPS-LHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLL 148
            + T L     S N       + L     L  L+L    L+          L  L  + L
Sbjct: 31  KDTTIL---HLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDG-TLPVLGTLDL 84

Query: 149 SHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPI 208
           SHN L  S+P     LP L  L +S N+  + LP  +      L +L L GN L+  +P 
Sbjct: 85  SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKT-LPP 141

Query: 209 SIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIW 268
            ++     L  L L++N  + L           +L     L  L +  N +   IP   +
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAG--------LLNGLENLDTLLLQENSLYT-IPKGFF 192

Query: 269 EVGNGNLNFLNLSHN 283
             G+  L F  L  N
Sbjct: 193 --GSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 8e-09
 Identities = 44/219 (20%), Positives = 70/219 (31%), Gaps = 42/219 (19%)

Query: 259 IPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEP--YSISSIRLLDLHSNQLRGNIPHMS- 315
           +P ++P         +   L+LS NLL +         + +  L+L   +L   +     
Sbjct: 25  LPPDLP--------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGT 75

Query: 316 -TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNN 374
                 +D S+N    +P                  +L               VLD+S N
Sbjct: 76  LPVLGTLDLSHNQLQSLPL-----------LGQTLPAL--------------TVLDVSFN 110

Query: 375 NLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKS 434
            L+ ++P   +      L  L L  N L  TL   +      L+ L L  N L  +    
Sbjct: 111 RLT-SLPLGALRGL-GELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGL 167

Query: 435 LANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSN 473
           L     L  L L+ N +    P     +  L    L  N
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 43/206 (20%), Positives = 74/206 (35%), Gaps = 30/206 (14%)

Query: 315 STNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNN 374
             +   V+    + T +P D+     +T     + N L      ++        L+L   
Sbjct: 9   VASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 375 NLSG---------------------TIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPR 413
            L+                      ++P   + Q+   L VL++  N L  +L       
Sbjct: 66  ELTKLQVDGTLPVLGTLDLSHNQLQSLPL--LGQTLPALTVLDVSFNRLT-SLPLGALRG 122

Query: 414 NCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSN 473
              LQ L L GN+L+ + P  L     L+ L L NN++++     L    +L  L+LQ N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 474 NFSGHISCPRNNVSWPLLQIVDLASN 499
           +     + P+      LL    L  N
Sbjct: 183 SLY---TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 47/239 (19%), Positives = 76/239 (31%), Gaps = 50/239 (20%)

Query: 142 NLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNR 201
           +   V     +L  ++P  L    +   L LS N         + +  + L  L+L    
Sbjct: 11  SHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAE 66

Query: 202 LEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPG 261
           L     + +   L  L TLDLS N+   L      P +                      
Sbjct: 67  LTK---LQVDGTLPVLGTLDLSHNQLQSL------PLLGQ-------------------- 97

Query: 262 EIPNWIWEVGNGNLNFLNLSHNLLVSLQEP--YSISSIRLLDLHSNQLRGNIPHMS---- 315
                        L  L++S N L SL       +  ++ L L  N+L+  +P       
Sbjct: 98  ---------TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPT 147

Query: 316 TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNN 374
                +  +NN+ T +PA + N +   +      NSL   IP+            L  N
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 45/261 (17%), Positives = 88/261 (33%), Gaps = 35/261 (13%)

Query: 90  ANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLS 149
             L      +      +  + S  +   ++  +   +N+    S    +   NL  + LS
Sbjct: 16  PGLANAVKQNLGKQSVT-DLVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKELHLS 71

Query: 150 HNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPIS 209
           HN ++  +   L  L  LE L ++ N+ +N    ++ + S+ L  L L  N L       
Sbjct: 72  HNQIS-DLS-PLKDLTKLEELSVNRNRLKN----LNGIPSACLSRLFLDNNELRD---TD 122

Query: 210 IIFELRNLYTLDLSSNKFS------------RLRLASSKPRVIPILKNQSQLSGLDISNN 257
            +  L+NL  L + +NK               L L  ++      L    +++ +D++  
Sbjct: 123 SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQ 182

Query: 258 QIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTN 317
           +   E   +        L   N   +       PY IS+          +   +P     
Sbjct: 183 KCVNEPVKY-----QPELYITNTVKDPDGRWISPYYISN--GGSYVDGCVLWELP---VY 232

Query: 318 TSYVDYSNNHFTFIPADIGNF 338
           T  V Y  + +  +      F
Sbjct: 233 TDEVSYKFSEYINVGETEAIF 253

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 48/270 (17%), Positives = 85/270 (31%), Gaps = 53/270 (19%)

Query: 21  PTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN 80
                 +L +  +    L +  + S ++N     +        S+  ++  T        
Sbjct: 19  ANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQ-----SLAGMQFFT-------- 63

Query: 81  FTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQL 140
                     NL +L     S N  S  +  L     L+ L ++ N L           +
Sbjct: 64  ----------NLKEL---HLSHNQIS-DLSPLKDLTKLEELSVNRNRL------KNLNGI 103

Query: 141 VNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGN 200
            +  L  L  ++       SL  L NLE L + NN+ ++ +  +  +S   L  LDL GN
Sbjct: 104 PSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS-IVMLGFLSK--LEVLDLHGN 160

Query: 201 RLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIP 260
            +        +  L+ +  +DL+  K     +       + I        G  IS   I 
Sbjct: 161 EITN---TGGLTRLKKVNWIDLTGQKCVNEPVKYQP--ELYITNTVKDPDGRWISPYYIS 215

Query: 261 GEIPNWIWEVGNGNLNFLNLSHNLLVSLQE 290
                       G+     +   L V   E
Sbjct: 216 ----------NGGSYVDGCVLWELPVYTDE 235

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 35/200 (17%), Positives = 72/200 (36%), Gaps = 28/200 (14%)

Query: 109 IPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLE 168
           +       N    +L   +++        ++L  +      ++++  S+   +    NL+
Sbjct: 12  VFPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLK 66

Query: 169 TLWLSNNQFENQLPEISNVSS-SVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKF 227
            L LS+    NQ+ ++S +   + L +L ++ NRL+    I        L  L L +N+ 
Sbjct: 67  ELHLSH----NQISDLSPLKDLTKLEELSVNRNRLKNLNGI----PSACLSRLFLDNNEL 118

Query: 228 SRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVS 287
                          L +   L  L I NN++   I           L  L+L  N + +
Sbjct: 119 RD----------TDSLIHLKNLEILSIRNNKL-KSIVM---LGFLSKLEVLDLHGNEITN 164

Query: 288 LQEPYSISSIRLLDLHSNQL 307
                 +  +  +DL   + 
Sbjct: 165 TGGLTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 36/203 (17%), Positives = 67/203 (33%), Gaps = 41/203 (20%)

Query: 274 NLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTS--YVDYSNNHFTFI 331
           N    NL    +  L     +S ++  +  ++ ++ ++  M   T+   +  S+N  + +
Sbjct: 20  NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQISDL 78

Query: 332 PADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETT 391
                               L              + L ++ N L   +           
Sbjct: 79  SP------------LKDLTKL--------------EELSVNRNRLK-NLNGI----PSAC 107

Query: 392 LGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHI 451
           L  L L  N L  T S         L+IL +  N+L+ +V   L   + L+VLDL  N I
Sbjct: 108 LSRLFLDNNELRDTDS---LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEI 162

Query: 452 SDNFPCWLGNASSLQVLVLQSNN 474
           ++     L     +  + L    
Sbjct: 163 TNTGG--LTRLKKVNWIDLTGQK 183

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.0 bits (177), Expect = 5e-14
 Identities = 44/219 (20%), Positives = 88/219 (40%), Gaps = 28/219 (12%)

Query: 90  ANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLS 149
               +    +      +    + ++  ++  +  + +++    S    + L N+  + L+
Sbjct: 21  DAFAETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 76

Query: 150 HNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSV-LFDLDLSGNRLEGPVPI 208
            N L   I   L  L NL  L+L      N++ ++S++     L  L L  N +     I
Sbjct: 77  GNKLT-DIK-PLANLKNLGWLFLDE----NKVKDLSSLKDLKKLKSLSLEHNGISD---I 127

Query: 209 SIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIW 268
           + +  L  L +L L +NK +           I +L   ++L  L + +NQI  +I     
Sbjct: 128 NGLVHLPQLESLYLGNNKITD----------ITVLSRLTKLDTLSLEDNQIS-DIVPL-- 174

Query: 269 EVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQL 307
             G   L  L LS N +  L+    + ++ +L+L S + 
Sbjct: 175 -AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 49/298 (16%), Positives = 104/298 (34%), Gaps = 47/298 (15%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
             +L +  +         ++ +++ +  + + +   S+       ++  L L+G      
Sbjct: 28  KDNLKKKSVTD--AVTQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNK---- 79

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
               + +++ L                  ANL  L  +    N     + SL   + LK 
Sbjct: 80  ----LTDIKPL------------------ANLKNLGWLFLDENKVK-DLSSLKDLKKLKS 116

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           L L  N +S          L  L  + L +N +  +    L  L  L+TL L +NQ  + 
Sbjct: 117 LSLEHNGIS---DINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISD- 170

Query: 181 LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVI 240
           +  ++ ++   L +L LS N +     +  +  L+NL  L+L S +       +      
Sbjct: 171 IVPLAGLTK--LQNLYLSKNHISD---LRALAGLKNLDVLELFSQE-----CLNKPINHQ 220

Query: 241 PILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIR 298
             L   + +   D S         +  +E  N   +    ++ +     +P +I   +
Sbjct: 221 SNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAK 278

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 40/198 (20%), Positives = 79/198 (39%), Gaps = 25/198 (12%)

Query: 138 EQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDL 197
           +         L   S+  ++      L +++ +  +N+  ++ +  I  + +  +  L L
Sbjct: 21  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQGIQYLPN--VTKLFL 75

Query: 198 SGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNN 257
           +GN+L     I  +  L+NL  L L  NK             +  LK+  +L  L + +N
Sbjct: 76  NGNKLTD---IKPLANLKNLGWLFLDENKVKD----------LSSLKDLKKLKSLSLEHN 122

Query: 258 QIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTN 317
            I  +I      V    L  L L +N +  +     ++ +  L L  NQ+  +I  ++  
Sbjct: 123 GI-SDINGL---VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIVPLAGL 177

Query: 318 TS--YVDYSNNHFTFIPA 333
           T    +  S NH + + A
Sbjct: 178 TKLQNLYLSKNHISDLRA 195

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 48/317 (15%), Positives = 101/317 (31%), Gaps = 62/317 (19%)

Query: 195 LDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDI 254
            +L    +   V  +   EL ++  +  +++              +  ++    ++ L +
Sbjct: 29  DNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKS----------VQGIQYLPNVTKLFL 75

Query: 255 SNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHM 314
           + N++  +I          NL +L L  N +  L     +  ++ L L  N +  +I  +
Sbjct: 76  NGNKL-TDIKPL---ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS-DINGL 130

Query: 315 STNTS--YVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLS 372
                   +   NN  T I               +    L                L L 
Sbjct: 131 VHLPQLESLYLGNNKITDITV------------LSRLTKL--------------DTLSLE 164

Query: 373 NNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVP 432
           +N +S  I         T L  L L +N+++  L          L +L+L   +      
Sbjct: 165 DNQIS-DIVPL---AGLTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPI 217

Query: 433 KSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQ 492
              +N  +   +   +  +    P  + +    +   ++ +          N VS+   Q
Sbjct: 218 NHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPEFT-----NEVSFIFYQ 270

Query: 493 IVDLASNK--FSGRLSQ 507
            V +   K  F GR++Q
Sbjct: 271 PVTIGKAKARFHGRVTQ 287

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 47/280 (16%), Positives = 91/280 (32%), Gaps = 70/280 (25%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
              +L   +++  +          ++  +    +++  ++    +  N  +  L L GN+
Sbjct: 27  IKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIK-SVQGIQYLPN--VTKLFLNGNK 79

Query: 427 LQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNV 486
           L  + P  LAN   L  L L  N + D     L +   L+ L L+ N     IS     V
Sbjct: 80  LTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNG----ISDINGLV 131

Query: 487 SWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV-ISSNQFYEVGVT 545
             P L+ + L +NK                 + +    S L  L  + +  NQ       
Sbjct: 132 HLPQLESLYLGNNK-----------------ITDITVLSRLTKLDTLSLEDNQI------ 168

Query: 546 VTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFG 605
                            + I   +                L  L +S N ++  +  +  
Sbjct: 169 -----------------SDIVPLAG------------LTKLQNLYLSKNHIS-DL-RALA 197

Query: 606 NLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 645
            LK ++ L+L       K     ++L   + +  +  +LV
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.3 bits (171), Expect = 1e-12
 Identities = 77/537 (14%), Positives = 161/537 (29%), Gaps = 139/537 (25%)

Query: 14  PEKILQVPT-LETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLT 72
            +  L++   L  L  ++N L+ G +    K + +   +         +   I       
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDG-VLGSGK-TWVALDVCLSYKVQCKMDFKI------F 185

Query: 73  WVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGI 132
           W+ ++ CN    +   +  L +L +     N  S        S N+K   L  +++   +
Sbjct: 186 WLNLKNCNSPETV---LEMLQKLLY-QIDPNWTSR----SDHSSNIK---LRIHSIQAEL 234

Query: 133 SSTFWEQLVNLNLVLLSH--------------------------NSLNGSIPRSLFLLPN 166
                 +     L++L +                          + L+ +    + L  +
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 167 LETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFEL------RNLYTL 220
             T  L+ ++ ++ L +  +     L    L+ N    P  +SII E             
Sbjct: 295 SMT--LTPDEVKSLLLKYLDCRPQDLPREVLTTN----PRRLSIIAESIRDGLATWDNWK 348

Query: 221 DLSSNKFSRLRLASSKPRVIPILK---NQSQLSGLDI--SNNQIPGEIPNWIWE--VGNG 273
            ++ +K + +  +S     + +L+    +     L +   +  IP  + + IW   + + 
Sbjct: 349 HVNCDKLTTIIESS-----LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 274 NLNFLNLSHN-LLVSLQEPYSISSIRLLDLHSNQLRGNIP--HMSTNTSY---VDYSNNH 327
            +  +N  H   LV  Q   S  SI  + L       N    H S    Y     + ++ 
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 328 FTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQ 387
                 D        +YF+    S +G          +     L N      +       
Sbjct: 464 LIPPYLD--------QYFY----SHIG----------H----HLKNIEHPERM------- 490

Query: 388 SETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLK 447
           +   +  L+     L   +       N    IL+                   LQ L   
Sbjct: 491 TLFRMVFLDF--RFLEQKIRHDSTAWNASGSILNT------------------LQQLKFY 530

Query: 448 NNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLA-SNKFSG 503
             +I DN P +    +++        +F        N +      ++ +A   +   
Sbjct: 531 KPYICDNDPKYERLVNAIL-------DFL--PKIEENLICSKYTDLLRIALMAEDEA 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 9e-10
 Identities = 69/433 (15%), Positives = 119/433 (27%), Gaps = 151/433 (34%)

Query: 313 HMSTNTSYVDYSNNH--FTFIPADIGNF-MSETEYFFAANNSLVGVIPESVCKGIYFQVL 369
           HM   T    Y        F  A + NF   + +      +    ++ +     I     
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ------DMPKSILSKEEIDHII---- 55

Query: 370 DLSNNNLSGT--IPACLIAQSETTL-----GVLNLG------------------------ 398
            +S + +SGT  +   L+++ E  +      VL +                         
Sbjct: 56  -MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 399 -RNNLNGTLSDTIFP-------------RNCGLQILDLGGN-QLQGV--VPKS-LAN--C 438
            R+ L       +F              R   L  L    N  + GV    K+ +A   C
Sbjct: 115 QRDRLYNDNQ--VFAKYNVSRLQPYLKLRQA-LLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 439 NMLQVLDLKNNHISDNFPCWL--GNASSLQVLVLQSNNFSGHIS---CPRNNVSWPLLQI 493
              +V    +  I   F  WL   N +S + ++         I      R++ S  +   
Sbjct: 172 LSYKVQCKMDFKI---F--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 494 VDLASNKFSGRLSQK------------W--------------LLTMEEMMVAETKSGSEL 527
           +     +    L  K                           LLT     V +  S +  
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 528 KHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEM------- 580
            H+     S              V+++LLK    +             +P E+       
Sbjct: 287 THISLDHHSMTLTP-------DEVKSLLLK----YLDCRPQD------LPREVLTTNPRR 329

Query: 581 ------------GRFKSLYALNMSHNALTGSIPSSFGNLKQIES----LDLSMNNLSGKI 624
                         +      +++ + LT  I SS   L+  E       LS+   S  I
Sbjct: 330 LSIIAESIRDGLATWD--NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 625 PAQLASLNFLSVL 637
           P  L     LS++
Sbjct: 388 PTIL-----LSLI 395

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 2e-06
 Identities = 91/620 (14%), Positives = 176/620 (28%), Gaps = 174/620 (28%)

Query: 97  HMDFSSN----HFSGHIPSLHKS--RNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSH 150
           HMDF +      +   +     +   N    D+  +     +S    + ++       S 
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIM------SK 58

Query: 151 NSLNGSIPRSLF------------------LLPNLETLWLSNN-QFENQLPEISNVSSSV 191
           ++++G+    LF                  L  N +  +L +  + E + P +       
Sbjct: 59  DAVSGT--LRLFWTLLSKQEEMVQKFVEEVLRINYK--FLMSPIKTEQRQPSMMTRMYIE 114

Query: 192 LFDLDLSGNRLEGPVPISI---IFELRN-LYTLD----------------------LSSN 225
             D   + N++     +S      +LR  L  L                         S 
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 226 KFSR----------LRLASSKPRVIPILKN-QSQLSGLDISNNQIPGEIPNWIWEVGNGN 274
           K             L+  +S   V+ +L+    Q+     S +     I   I  +    
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 275 LNFL---NLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMST-NTSYVDYSNN---- 326
              L      + LLV L    +  +    +L    L      ++T      D+ +     
Sbjct: 235 RRLLKSKPYENCLLV-LLNVQNAKAWNAFNLSCKIL------LTTRFKQVTDFLSAATTT 287

Query: 327 HFTFIPADIGNFMSETEYFFAAN-NSLVGVIPESVCKGIYFQV----------------- 368
           H +     +     E +       +     +P  V      ++                 
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 369 LDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCG-----LQIL--D 421
             ++ + L+  I + L              R   +  LS  +FP +       L ++  D
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEY------RKMFD-RLS--VFPPSAHIPTILLSLIWFD 398

Query: 422 LGGNQLQGVV----PKSLANCN---------MLQVLDLKNN-------HI----SDNFP- 456
           +  + +  VV      SL              +  L+LK         H       N P 
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-LELKVKLENEYALHRSIVDHYNIPK 457

Query: 457 CWLGNASSLQVLVLQSNNFSG-HISCPRNNVSWPLLQIV--DLASNKFSGRLSQKWLLTM 513
            +  +      L     +  G H+    +     L ++V  D    +F   L QK    +
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF---RF---LEQK----I 507

Query: 514 EEMMVAETKSGSEL-------KHLRYVISSNQFYEVGVTVT---VKGVETMLLKVPNIFT 563
                A   SGS L        +  Y+  ++  YE  V      +  +E  L+     +T
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK--YT 565

Query: 564 SI-DFSSNNFEGPIPEEMGR 582
            +   +    +  I EE  +
Sbjct: 566 DLLRIALMAEDEAIFEEAHK 585

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 43/214 (20%), Positives = 78/214 (36%), Gaps = 20/214 (9%)

Query: 21  PTLETLDLSENQLLQGSLPN--FPKNSSLRNLILSGTGFSGTLPDSI-GNLENLTWVEVR 77
           P+ +TL L E  L   ++P+  F    ++  + +S       L      NL  +T +E+R
Sbjct: 31  PSTQTLKLIETHLR--TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 78  RCNFTGPIPPSM-ANLTQLFHMDFSSNHFSGHIPS---LHKSRNLKYLDLSFNNLSGGIS 133
                  I P     L  L  +   +       P    ++ +     L+++ N     I 
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 134 STFWEQLVNLNLVL-LSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVS---- 188
              ++ L N  L L L +N    S+    F    L+ ++L+ N     L  I   +    
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN---KYLTVIDKDAFGGV 203

Query: 189 SSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDL 222
            S    LD+S   +   +P   +  L+ L   + 
Sbjct: 204 YSGPSLLDVSQTSVTA-LPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 34/220 (15%), Positives = 81/220 (36%), Gaps = 39/220 (17%)

Query: 90  ANLTQLFHMDFSSNHFSGHIPS--LHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVL 147
           +NL  +  +  S +     + S   +    + ++++                    NL  
Sbjct: 52  SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR----------------NLTY 95

Query: 148 LSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSS-SVLFDLDLSGNRLEGPV 206
           +  ++L          LP L+ L + N   +   P+++ V S  + F L+++ N     +
Sbjct: 96  IDPDALKE--------LPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 207 PISIIFELRN-LYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPN 265
           P++    L N   TL L +N F+ ++             N ++L  + ++ N+    I  
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFTSVQ-----GYAF----NGTKLDAVYLNKNKYLTVIDK 197

Query: 266 WIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSN 305
             +       + L++S   + +L     +  ++ L   + 
Sbjct: 198 DAFGGVYSGPSLLDVSQTSVTALP-SKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 35/245 (14%), Positives = 72/245 (29%), Gaps = 30/245 (12%)

Query: 179 NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPR 238
             +  I ++  S    L L    L   +P      L N+  + +S +    + L   +  
Sbjct: 21  KDIQRIPSLPPS-TQTLKLIETHLRT-IPSHAFSNLPNISRIYVSID----VTLQQLESH 74

Query: 239 VIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIR 298
                 N S+++ ++I N +    I     +     L FL + +  L    +   + S  
Sbjct: 75  S---FYNLSKVTHIEIRNTRNLTYIDPDALK-ELPLLKFLGIFNTGLKMFPDLTKVYSTD 130

Query: 299 LLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADI-GNFMSETEYFFAANNSLVGVIP 357
           +  +                      N + T IP +      +ET      NN     + 
Sbjct: 131 IFFILEIT-----------------DNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQ 172

Query: 358 ESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGL 417
                G     + L+ N     I         +   +L++ + ++   L          L
Sbjct: 173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKEL 231

Query: 418 QILDL 422
              + 
Sbjct: 232 IARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 26/189 (13%), Positives = 58/189 (30%), Gaps = 6/189 (3%)

Query: 295 SSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVG 354
                  +    ++  IP +  +T  +     H   IP+   + +      + + +  + 
Sbjct: 11  HQEEDFRVTCKDIQ-RIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 355 VIPESVCKGIYF-QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPR 413
            +       +     +++ N      I    + +    L  L +    L      T    
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL-PLLKFLGIFNTGLKMFPDLTKVYS 128

Query: 414 NCGLQILDLGGN-QLQGVVPKSLAN-CNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQ 471
                IL++  N  +  +   +    CN    L L NN  + +   +  N + L  + L 
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187

Query: 472 SNNFSGHIS 480
            N +   I 
Sbjct: 188 KNKYLTVID 196

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 26/235 (11%), Positives = 68/235 (28%), Gaps = 55/235 (23%)

Query: 416 GLQILDLGGNQLQGVVPKSLANCNMLQVLDL-KNNHISDNFPCWLGNASSLQVLVLQSNN 474
             Q L L    L+ +   + +N   +  + +  +  +         N S +  + +++  
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 475 FSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV- 533
                             +  +  +                           L  L+++ 
Sbjct: 92  -----------------NLTYIDPDALKE-----------------------LPLLKFLG 111

Query: 534 ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEM--GRFKSLYALNM 591
           I +           V   +   +        ++ + N +   IP     G       L +
Sbjct: 112 IFNTGLKMFPDLTKVYSTDIFFI--------LEITDNPYMTSIPVNAFQGLCNETLTLKL 163

Query: 592 SHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS--LNFLSVLNLSYNNL 644
            +N  T S+     N  +++++ L+ N     I         +  S+L++S  ++
Sbjct: 164 YNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 43/278 (15%), Positives = 81/278 (29%), Gaps = 80/278 (28%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
           Q L L   +L  TIP+   + +   +  + +  +     L    F     +  +++   +
Sbjct: 34  QTLKLIETHLR-TIPSHAFS-NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 427 -LQGVVPKSLANCNMLQVLDLKNNHISDNFP--CWLGNASSLQVLVLQSNNFSGHISCPR 483
            L  + P +L    +L+ L + N  +   FP    + +     +L +  N          
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNP--------- 141

Query: 484 NNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVG 543
                    +  +  N F G       L             +E   L+  + +N F  V 
Sbjct: 142 --------YMTSIPVNAFQG-------LC------------NETLTLK--LYNNGFTSV- 171

Query: 544 VTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPS- 602
                                       F G           L A+ ++ N     I   
Sbjct: 172 ------------------------QGYAFNGT---------KLDAVYLNKNKYLTVIDKD 198

Query: 603 SFGNLKQ-IESLDLSMNNLSGKIPAQLASLNFLSVLNL 639
           +FG +      LD+S  +++      L  L  L   N 
Sbjct: 199 AFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 46/190 (24%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 21  PTLETLDLSENQLLQGSLPN--FPKNSSLRNLILSGTGFSGTLPDSI-GNLENLTWVEVR 77
           P L+ LDLS  ++   ++ +  +   S L  LIL+G     +L       L +L  +   
Sbjct: 52  PELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAV 108

Query: 78  RCNFTGPIPPSMA-NLTQLFHMDFSSNHFSGHIPS---LHKSRNLKYLDLSFNNLSGGIS 133
             N    +      +L  L  ++ + N                NL++LDLS N +     
Sbjct: 109 ETNLAS-LENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 134 STF--WEQLVNLNLVL-LSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSS 190
           +      Q+  LNL L LS N +N  I    F    L+ L L  NQ ++ +P+      +
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLT 224

Query: 191 VLFDLDLSGN 200
            L  + L  N
Sbjct: 225 SLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 50/252 (19%), Positives = 87/252 (34%), Gaps = 48/252 (19%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
           + LDLS N L   + +     S   L VL+L R  +  T+ D  +     L  L L GN 
Sbjct: 31  KNLDLSFNPLR-HLGSYSF-FSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 427 LQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNV 486
           +Q +   + +  + LQ L     +++      +G+  +L+ L +  N             
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN------------- 134

Query: 487 SWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTV 546
                 I      ++   L+                    L+HL   +SSN+   +    
Sbjct: 135 -----LIQSFKLPEYFSNLTN-------------------LEHLD--LSSNKIQSIY--- 165

Query: 547 TVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGN 606
                  +L ++P +  S+D S N     I     +   L  L +  N L       F  
Sbjct: 166 --CTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDR 222

Query: 607 LKQIESLDLSMN 618
           L  ++ + L  N
Sbjct: 223 LTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 48/214 (22%), Positives = 86/214 (40%), Gaps = 16/214 (7%)

Query: 21  PTLETLDLSENQLLQGSLPN--FPKNSSLRNLILSGTGFSGTLPDSI-GNLENLTWVEVR 77
            + + LDLS N L    L +  F     L+ L LS      T+ D    +L +L+ + + 
Sbjct: 28  FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84

Query: 78  RCNFTGPIPPSM-ANLTQLFHMDFSSNHFSGHIPS--LHKSRNLKYLDLSFNNLSGGISS 134
                  +     + L+ L  +     + +  + +  +   + LK L+++ N +      
Sbjct: 85  GNPIQS-LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 135 TFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLSNNQFENQLPEISN--VSSSV 191
            ++  L NL  + LS N +  SI  +    L  +  L LS +   N +  I         
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 192 LFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSN 225
           L +L L  N+L+  VP  I   L +L  + L +N
Sbjct: 202 LKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 58/282 (20%), Positives = 87/282 (30%), Gaps = 86/282 (30%)

Query: 148 LSHNSLNGSIPRSLFL-LPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPV 206
           LS N L   +    F   P L+ L LS  +       I  +     +             
Sbjct: 35  LSFNPL-RHLGSYSFFSFPELQVLDLSRCE-------IQTIEDGA-YQ------------ 73

Query: 207 PISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNW 266
                  L +L TL L+ N    L L              S L  L      +   + N+
Sbjct: 74  ------SLSHLSTLILTGNPIQSLALG--------AFSGLSSLQKLVAVETNLA-SLENF 118

Query: 267 IWEVGNGNLNFLNLSHNLLVSLQEP---YSISSIRLLDLHSNQLRGNIPHMSTNTSYVDY 323
                   L  LN++HNL+ S + P    +++++  LDL SN++                
Sbjct: 119 PIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI---------------- 161

Query: 324 SNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPAC 383
                  I                  + +  +             LDLS N ++  I   
Sbjct: 162 -----QSIYCTD----------LRVLHQMPLLNLS----------LDLSLNPMN-FIQPG 195

Query: 384 LIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGN 425
             A  E  L  L L  N L  ++ D IF R   LQ + L  N
Sbjct: 196 --AFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 44/214 (20%), Positives = 70/214 (32%), Gaps = 16/214 (7%)

Query: 295 SSIRLLDLHSNQLRGNIPHMS----TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANN 350
            S + LDL  N LR ++   S         +D S      I       +S         N
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 351 SLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTI 410
            +  +   +       Q L     NL+ ++          TL  LN+  N +        
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLA-SLEN-FPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 411 FPRNCGLQILDLGGNQLQGVVPKSLANCNMLQV----LDLKNNHISDNFPCWLGNASSLQ 466
           F     L+ LDL  N++Q +    L   + + +    LDL  N ++            L+
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLK 203

Query: 467 VLVLQSNNFSGHISCPRNN-VSWPLLQIVDLASN 499
            L L +N      S P         LQ + L +N
Sbjct: 204 ELALDTNQLK---SVPDGIFDRLTSLQKIWLHTN 234

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 57/346 (16%), Positives = 113/346 (32%), Gaps = 77/346 (22%)

Query: 1   TLDLSECGLQGKFPEKILQV----PTLETLDLSENQL-------LQGSLPNFPKNSSLRN 49
              L    +  +  + +  V     +++ + LS N +       L  ++        L  
Sbjct: 8   GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENI---ASKKDLEI 64

Query: 50  LILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGH- 108
              S            G +++     +R       +  ++    +L  +  S N F    
Sbjct: 65  AEFSDI--------FTGRVKDEIPEALR------LLLQALLKCPKLHTVRLSDNAFGPTA 110

Query: 109 ----IPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLL 164
               I  L K   L++L L  N L     +     L  L +   + N+            
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA------------ 158

Query: 165 PNLETLWLSNNQFENQ-LPEISNV--SSSVLFDLDLSGNRLEGPVPISIIFEL----RNL 217
           P L ++    N+ EN  + E +    S  +L  + +  N +       ++ E     + L
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 218 YTLDLSSNKFSR---LRLASSKPRVIPILKNQSQLSGLDISNNQIPGE----IPNWIWEV 270
             LDL  N F+      LA +       LK+   L  L +++  +       + +   ++
Sbjct: 219 KVLDLQDNTFTHLGSSALAIA-------LKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271

Query: 271 GNGNLNFLNLSHN---------LLVSLQEPYSISSIRLLDLHSNQL 307
            N  L  L L +N         L   + E   +  +  L+L+ N+ 
Sbjct: 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEK--MPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.6 bits (155), Expect = 7e-11
 Identities = 58/338 (17%), Positives = 104/338 (30%), Gaps = 77/338 (22%)

Query: 167 LETLWLSNNQFENQ--------LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFEL---- 214
           +E   L  +    +        L E  +V       + LSGN + G      + E     
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKE-----IVLSGNTI-GTEAARWLSENIASK 59

Query: 215 RNLYTLDLSSNKFSRLR--LASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEV-- 270
           ++L   + S     R++  +  +   ++  L    +L  + +S+N         + +   
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 271 GNGNLNFLNLSHNLL---------------VSLQEPYSISSIRLLDLHSNQLR------- 308
            +  L  L L +N L                  ++  +   +R +    N+L        
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 309 GNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQV 368
                       V    N     P  I + + E     A    L              +V
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIR--PEGIEHLLLE---GLAYCQEL--------------KV 220

Query: 369 LDLSNNNLSGTIPACLIAQ---SETTLGVLNLGRNNLNGT----LSDTI-FPRNCGLQIL 420
           LDL +N     + +  +A    S   L  L L    L+      + D      N GLQ L
Sbjct: 221 LDLQDNTF-THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279

Query: 421 DLGGNQLQGVVPKSLA-----NCNMLQVLDLKNNHISD 453
            L  N+++    ++L          L  L+L  N  S+
Sbjct: 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 57/357 (15%), Positives = 103/357 (28%), Gaps = 92/357 (25%)

Query: 192 LFDLDLSGNRL--EGPVPI-SIIFELRNLYTLDLSSNKFSR---LRLASSKPRVIPILKN 245
           +    L  + +  E    + +++ E  ++  + LS N         L+         + +
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSE-------NIAS 58

Query: 246 QSQLSGLDISNNQIPGEIPNWIWEVG---------NGNLNFLNLSHN---------LLVS 287
           +  L   + S+    G + + I E              L+ + LS N         L+  
Sbjct: 59  KKDLEIAEFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF 117

Query: 288 LQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFA 347
           L +    + +  L LH+N L                                        
Sbjct: 118 LSKH---TPLEHLYLHNNGLG-------------------------PQA-----GAKIAR 144

Query: 348 ANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIA---QSETTLGVLNLGRNNLN- 403
           A   L           +  + +    N L         A   QS   L  + + +N +  
Sbjct: 145 ALQELAVNKKAKNAPPL--RSIICGRNRL-ENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 201

Query: 404 ---GTLSDTIFPRNCGLQILDLGGNQL--QGVVP--KSLANCNMLQVLDLKNNHISDNFP 456
                L          L++LDL  N     G      +L +   L+ L L +  +S    
Sbjct: 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261

Query: 457 CWLGNA------SSLQVLVLQSNNFSGH-----ISCPRNNVSWPLLQIVDLASNKFS 502
             + +A        LQ L LQ N           +     +  P L  ++L  N+FS
Sbjct: 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM--PDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 43/314 (13%), Positives = 93/314 (29%), Gaps = 68/314 (21%)

Query: 366 FQVLDLSNNNLS--GTIPACLIAQSETTLGVLNLGRNNLNGT----LSDTIFPRNCGLQI 419
            +   L  + ++         +   + ++  + L  N +       LS+ I      L+I
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENI-ASKKDLEI 64

Query: 420 LDLGGNQLQGVVP----------KSLANCNMLQVLDLKNNHISDNFPCWLGNA----SSL 465
            +        V            ++L  C  L  + L +N         L +     + L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 466 QVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGS 525
           + L L +N                       A  K +  L +  +         + K+  
Sbjct: 125 EHLYLHNNGLG------------------PQAGAKIARALQELAVNK-------KAKNAP 159

Query: 526 ELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNF-----EGPIPEEM 580
            L+ +  +   N+     +    K       +   +  ++    N       E  + E +
Sbjct: 160 PLRSI--ICGRNRLENGSMKEWAKT-----FQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212

Query: 581 GRFKSLYALNMSHNALTG----SIPSSFGNLKQIESLDLSMNNLSGK----IPAQLASLN 632
              + L  L++  N  T     ++  +  +   +  L L+   LS +    +    + L 
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272

Query: 633 F--LSVLNLSYNNL 644
              L  L L YN +
Sbjct: 273 NIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 39/313 (12%), Positives = 85/313 (27%), Gaps = 67/313 (21%)

Query: 367 QVLDLSNNNLS--GTIPACLIAQSETTLGVLNLGRNNLNGTLSDTI---------FPRNC 415
           + + LS N +             S+  L +             +             +  
Sbjct: 35  KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94

Query: 416 GLQILDLGGNQL--QGVVP--KSLANCNMLQVLDLKNNHISD-------------NFPCW 458
            L  + L  N        P    L+    L+ L L NN +                    
Sbjct: 95  KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK 154

Query: 459 LGNASSLQVLVLQSNNFSGHISCP------RNNVSWPLLQIVDLASNKFSGRLSQKWLLT 512
             NA  L+ ++   N    + S        +++     L  V +  N           + 
Sbjct: 155 AKNAPPLRSIICGRNRL-ENGSMKEWAKTFQSHRL---LHTVKMVQNG----------IR 200

Query: 513 MEEMMVAETKSGSELKHLRYV-ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNN 571
            E +     +  +  + L+ + +  N F  +G       +   L   PN+   +  +   
Sbjct: 201 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS----SALAIALKSWPNL-RELGLNDCL 255

Query: 572 F--EG--PIPE--EMGRFKSLYALNMSHNALTGSIPSSFG-----NLKQIESLDLSMNNL 620
               G   + +         L  L + +N +      +        +  +  L+L+ N  
Sbjct: 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

Query: 621 S--GKIPAQLASL 631
           S    +  ++  +
Sbjct: 316 SEEDDVVDEIREV 328

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 39/236 (16%), Positives = 69/236 (29%), Gaps = 47/236 (19%)

Query: 89  MANLTQLFHMDFSSNHFS-----GHIPSLHKSRNLKYLDLSFNNLSGG----ISSTFWE- 138
           MA  + +       +  +          L +  ++K + LS N +       +S      
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 139 -QLVNLNLVLLSHNSLNGSIPRSLFLL-------PNLETLWLSNNQFENQ-LPEISNV-- 187
             L       +    +   IP +L LL       P L T+ LS+N F       + +   
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 188 SSSVLFDLDLSGNR------------LEGPVPISIIFELRNLYTLDLSSNKFSR---LRL 232
             + L  L L  N             L+             L ++    N+         
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 233 ASSKPRVIPILKNQSQLSGLDISNNQIPGE-IPNWIWEV--GNGNLNFLNLSHNLL 285
           A +        ++   L  + +  N I  E I + + E       L  L+L  N  
Sbjct: 180 AKT-------FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 47/224 (20%)

Query: 1   TLDLSECGLQGKFPEKILQV----PTLETLDLSENQL-------------LQGSLPNFPK 43
           T+ LS+        E ++        LE L L  N L                       
Sbjct: 98  TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKN 157

Query: 44  NSSLRNLILS----GTGFSGTLPDSIGNLENLTWVEVRRCNFT-----GPIPPSMANLTQ 94
              LR++I        G       +  +   L  V++ +           +   +A   +
Sbjct: 158 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 217

Query: 95  LFHMDFSSNHFSG----HI-PSLHKSRNLKYLDLSFNN--------LSGGISSTFWEQLV 141
           L  +D   N F+      +  +L    NL+ L L+           +    S      L 
Sbjct: 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ 277

Query: 142 NLNLVLLSHNSLNG----SIPRSLFL-LPNLETLWLSNNQFENQ 180
            L L    +N +      ++   +   +P+L  L L+ N+F  +
Sbjct: 278 TLRL---QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 63.2 bits (154), Expect = 8e-11
 Identities = 57/317 (17%), Positives = 107/317 (33%), Gaps = 55/317 (17%)

Query: 367 QVLDLSNNNLSGTIPACL---IAQSETTLGVLNLGRNNLNGT----LSDTIFPRNCGLQI 419
             LDLS NNL       L    A +  ++  LNL  N+L       L   +      +  
Sbjct: 25  TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84

Query: 420 LDLGGNQL--QGVVP--KSLANCN-MLQVLDLKNNHISDNFPCWLGNA-----SSLQVLV 469
           L+L GN L  +      K+LA     + VLDL  N  S         A     +S+  L 
Sbjct: 85  LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLN 144

Query: 470 LQSNNFSG----HIS--CPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKS 523
           L+ N+        +         +   +  ++L  N  + +          E+       
Sbjct: 145 LRGNDLGIKSSDELIQILAAIPAN---VNSLNLRGNNLASK-------NCAELAKFLASI 194

Query: 524 GSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGP----IPEE 579
            + +  L   +S+N             +  +   +PN   S++   N   GP    +   
Sbjct: 195 PASVTSLD--LSANLLGLKSY----AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL 248

Query: 580 MGRFKSLYALNMSHNALTG-------SIPSSFGNLKQIESLDLSMNNLSG----KIPAQL 628
               K L  + + ++ +         ++ ++F N+++I  +D +   +       I   +
Sbjct: 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLI 308

Query: 629 ASLNF-LSVLNLSYNNL 644
             L+    V +L    L
Sbjct: 309 RELSGKADVPSLLNQCL 325

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 48/312 (15%), Positives = 97/312 (31%), Gaps = 57/312 (18%)

Query: 373 NNNLSGTIPACLIAQ---SETTLGVLNLGRNNLNGT----LSDTIFPRNCGLQILDLGGN 425
           N  L+    +  + +       +  L+L  NNL       L          +  L+L GN
Sbjct: 2   NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN 61

Query: 426 QLQGVVPKSLA-----NCNMLQVLDLKNNHISDNFPCWLGNA-----SSLQVLVLQSNNF 475
            L       L          +  L+L  N +S      L         ++ VL L  N+F
Sbjct: 62  SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 476 SGHISC-------PRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELK 528
               S             S   +  ++L  N    +       + +E++       + + 
Sbjct: 122 -SSKSSSEFKQAFSNLPAS---ITSLNLRGNDLGIK-------SSDELIQILAAIPANVN 170

Query: 529 HLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRF----- 583
            L   +  N             +   L  +P   TS+D S+N        E+        
Sbjct: 171 SLN--LRGNNLASKN----CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224

Query: 584 KSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGKIPAQ-------LASLN 632
             + +LN+  N L G     +     +LK ++++ L  + +      Q         ++ 
Sbjct: 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284

Query: 633 FLSVLNLSYNNL 644
            + +++ +   +
Sbjct: 285 KIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 51/332 (15%), Positives = 101/332 (30%), Gaps = 74/332 (22%)

Query: 188 SSSVLFDLDLSGNRLEGPVPISIIFELRN----LYTLDLSSNKFSR---LRLASSKPRVI 240
               +  LDLS N L     + +I    N    + +L+LS N         L        
Sbjct: 20  IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI----- 74

Query: 241 PILKNQSQLSGLDISNNQIPGEIPNWIWEV---GNGNLNFLNLSHN---------LLVSL 288
            +    + ++ L++S N +  +  + + +        +  L+L  N            + 
Sbjct: 75  -LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 289 QEPYSISSIRLLDLHSNQLRGN--------IPHMSTNTSYVDYSNNHFTFIPADIGNFMS 340
               +  SI  L+L  N L           +  +  N + ++   N+             
Sbjct: 134 SNLPA--SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA----SKN-CAE 186

Query: 341 ETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQ----SETTLGVLN 396
             ++  +   S+                LDLS N L G      +A         +  LN
Sbjct: 187 LAKFLASIPASV--------------TSLDLSANLL-GLKSYAELAYIFSSIPNHVVSLN 231

Query: 397 LGRNNLNGTLSDTI---FPRNCGLQILDLGGNQLQGVVPK-------SLANCNMLQVLDL 446
           L  N L+G   + +         LQ + L  + ++ +  +       +  N   + ++D 
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291

Query: 447 KNNHISDNFPCWLGNA-----SSLQVLVLQSN 473
               I  +    + N          V  L + 
Sbjct: 292 NGKEIHPSHSIPISNLIRELSGKADVPSLLNQ 323

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 51/381 (13%), Positives = 109/381 (28%), Gaps = 79/381 (20%)

Query: 112 LHKSRNLKYLDLSFNNLSG----GISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLL--- 164
                 +  LDLS NNL       +   F     ++  + LS NSL       L  +   
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 165 --PNLETLWLSNNQFENQ----LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFEL---- 214
              N+ +L LS N    +    L +        +  LDL  N        S   +     
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNL 136

Query: 215 -RNLYTLDLSSNKFSR---LRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEV 270
             ++ +L+L  N         L         +    + ++ L++  N +  +    + + 
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQI------LAAIPANVNSLNLRGNNLASKNCAELAKF 190

Query: 271 ---GNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNH 327
                 ++  L+LS NLL        + S   L   +        H+ +    ++   N 
Sbjct: 191 LASIPASVTSLDLSANLL-------GLKSYAEL---AYIFSSIPNHVVS----LNLCLNC 236

Query: 328 FTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQ 387
                      +   +    +   L              Q + L  + +         A 
Sbjct: 237 LH----GPS--LENLKLLKDSLKHL--------------QTVYLDYDIVKNMSKEQCKAL 276

Query: 388 SE-----TTLGVLNLGRNNLNGT----LSDTIFPRNCGLQILDLGGNQL-----QGVVPK 433
                    + +++     ++ +    +S+ I   +    +  L    L          +
Sbjct: 277 GAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIE 336

Query: 434 SLANCNMLQVLDLKNNHISDN 454
            L   + L+        + ++
Sbjct: 337 DLNIPDELRESIQTCKPLLEH 357

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 55/336 (16%), Positives = 114/336 (33%), Gaps = 52/336 (15%)

Query: 21  PTLETLDLSENQL-------LQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIG-----NL 68
             + +LDLS N L       L  +  N    +S+ +L LSG        D +        
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFAN--TPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 69  ENLTWVEVRRCNFTGPIPPSMANL-----TQLFHMDFSSNHFSG----HIPS--LHKSRN 117
            N+T + +     +      +          +  +D   N FS            +   +
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 118 LKYLDLSFNNLSGGISSTFWEQLVNLNLVL----LSHNSLN----GSIPRSLFLLP-NLE 168
           +  L+L  N+L    S    + L  +   +    L  N+L       + + L  +P ++ 
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199

Query: 169 TLWLSNNQFENQ----LPEISNVSSSVLFDLDLSGNRL--EGPVPISIIFE-LRNLYTLD 221
           +L LS N    +    L  I +   + +  L+L  N L       + ++ + L++L T+ 
Sbjct: 200 SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259

Query: 222 LSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEV---GNGNLNFL 278
           L  +    +     K  +     N  ++  +D +  +I       I  +    +G  +  
Sbjct: 260 LDYDIVKNMSKEQCK-ALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVP 318

Query: 279 NLSHNLL-------VSLQEPYSISSIRLLDLHSNQL 307
           +L +  L        ++++      +R        L
Sbjct: 319 SLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 48/271 (17%), Positives = 83/271 (30%), Gaps = 59/271 (21%)

Query: 242 ILKNQSQLSGLDISNNQIPGEIPNWIWEV---GNGNLNFLNLSHN---------LLVSLQ 289
                  ++ LD+S N +       + +       ++  LNLS N         L+  L 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 290 EPYSISSIRLLDLHSNQLRGN--------IPHMSTNTSYVDYSNNHFTFIPADIGNFMSE 341
                +++  L+L  N L           +  +    + +D   N F+   +   +   +
Sbjct: 77  A--IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS---SKSSSEFKQ 131

Query: 342 TEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQS----ETTLGVLNL 397
              F     S+                L+L  N+L G   +  + Q        +  LNL
Sbjct: 132 A--FSNLPASI--------------TSLNLRGNDL-GIKSSDELIQILAAIPANVNSLNL 174

Query: 398 GRNNLNGT----LSDTIFPRNCGLQILDLGGNQLQGVVPKSLA-----NCNMLQVLDLKN 448
             NNL       L+  +      +  LDL  N L       LA       N +  L+L  
Sbjct: 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234

Query: 449 NHISDNFPCWLGNA----SSLQVLVLQSNNF 475
           N +       L         LQ + L  +  
Sbjct: 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIV 265

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 56/208 (26%), Positives = 91/208 (43%), Gaps = 13/208 (6%)

Query: 272 NGNLNFLNLSHNLLVSLQEPYSI-SSIRLLDLHSNQLRGNIPHMS----TNTSYVDYSNN 326
           N N N ++ S   L ++  P +I +  + LDL SN+L  ++P  +    T    +  ++N
Sbjct: 15  NNNKNSVDCSSKKLTAI--PSNIPADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDN 71

Query: 327 HFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYF-QVLDLSNNNLSGTIPACLI 385
               +PA I   +   E  +  +N L   +P  V   +     L L  N L  ++P  + 
Sbjct: 72  KLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVF 129

Query: 386 AQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLD 445
             S T L  L+LG N L  +L   +F +   L+ L L  NQL+ V   +      L+ L 
Sbjct: 130 D-SLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187

Query: 446 LKNNHISDNFPCWLGNASSLQVLVLQSN 473
           L NN +         +   L++L LQ N
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 51/209 (24%), Positives = 84/209 (40%), Gaps = 15/209 (7%)

Query: 22  TLETLDLSENQLLQGSLP-NFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN 80
              ++D S  +L   ++P N P  +  + L L     S     +   L  L  + +    
Sbjct: 17  NKNSVDCSSKKLT--AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72

Query: 81  FTGPIPPSM-ANLTQLFHMDFSSNHFSGHIPS--LHKSRNLKYLDLSFNNLSGGISSTFW 137
               +P  +   L  L  +  + N     +P     +  NL  L L  N L   +    +
Sbjct: 73  LQT-LPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVF 129

Query: 138 EQLVNLNLVLLSHNSLNGSIPRSLF-LLPNLETLWLSNNQFENQLPEISNVSSSVLFDLD 196
           + L  L  + L +N L  S+P+ +F  L +L+ L L NNQ + ++PE +    + L  L 
Sbjct: 130 DSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLK 187

Query: 197 LSGNRLEGPVPISIIFELRNLYTLDLSSN 225
           L  N+L+  VP      L  L  L L  N
Sbjct: 188 LDNNQLKR-VPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 53/200 (26%), Positives = 91/200 (45%), Gaps = 42/200 (21%)

Query: 117 NLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLSNN 175
           + K LDL  N LS  + S  + +L  L L+ L+ N L  ++P  +F  L NLETLW+++N
Sbjct: 38  DTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 176 QFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASS 235
           + +                           +PI +  +L NL  L L  N+   L     
Sbjct: 96  KLQA--------------------------LPIGVFDQLVNLAELRLDRNQLKSL----- 124

Query: 236 KPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPY--S 293
            PRV   L   ++L+ L +  N++   +P  +++    +L  L L +N L  + E     
Sbjct: 125 PPRVFDSL---TKLTYLSLGYNELQ-SLPKGVFD-KLTSLKELRLYNNQLKRVPEGAFDK 179

Query: 294 ISSIRLLDLHSNQLRGNIPH 313
           ++ ++ L L +NQL+  +P 
Sbjct: 180 LTELKTLKLDNNQLK-RVPE 198

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 14/167 (8%)

Query: 97  HMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGS 156
            +            +L   +  K+L LS NN+      +    + NL ++ L  N +   
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIE---KISSLSGMENLRILSLGRNLIK-K 84

Query: 157 IPRSLFLLPNLETLWLSNNQFENQLPEISNVSS-SVLFDLDLSGNRLEGPVPISIIFELR 215
           I     +   LE LW+S NQ  +    +S +     L  L +S N++     I  +  L 
Sbjct: 85  IENLDAVADTLEELWISYNQIAS----LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALD 140

Query: 216 NLYTLDLSSNKFSRLRLASS-----KPRVIPILKNQSQLSGLDISNN 257
            L  L L+ N        ++     +  V+  L N  +L G+ +  +
Sbjct: 141 KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVD 187

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 26/155 (16%)

Query: 137 WEQLVNLNLVLLSHNSLNGSIPR------SLFLLPNLETLWLSNNQFENQLPEISNVSS- 189
           +E+  ++         L+G IP       +L  L   + L LS N  E    +IS++S  
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE----KISSLSGM 69

Query: 190 SVLFDLDLSGNRLEGPVPISIIFELRN-LYTLDLSSNKFSRLRLASSKPRVIPILKNQSQ 248
             L  L L  N ++    I  +  + + L  L +S N+ +           +  ++    
Sbjct: 70  ENLRILSLGRNLIKK---IENLDAVADTLEELWISYNQIAS----------LSGIEKLVN 116

Query: 249 LSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHN 283
           L  L +SNN+I               L  L L+ N
Sbjct: 117 LRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGN 150

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 19/122 (15%)

Query: 117 NLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPNLETLWLSNN 175
            +  + L  N +   I    +     L  + LS+N ++  +    F  L +L +L L  N
Sbjct: 33  TITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90

Query: 176 QFENQLPEISNVSSSVLFD-------LDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFS 228
           +       I+ +  S+ F+       L L+ N++   + +    +L NL  L L  NK  
Sbjct: 91  K-------ITELPKSL-FEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQ 141

Query: 229 RL 230
            +
Sbjct: 142 TI 143

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 10/144 (6%)

Query: 39  PNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSM-ANLTQLFH 97
            N P   ++  + L         P +    + L  +++   N    + P     L  L  
Sbjct: 28  TNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQGLRSLNS 84

Query: 98  MDFSSNHFSGHIPS--LHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNG 155
           +    N  +  +P        +L+ L L+ N ++      F + L NLNL+ L  N L  
Sbjct: 85  LVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAF-QDLHNLNLLSLYDNKLQ- 141

Query: 156 SIPRSLF-LLPNLETLWLSNNQFE 178
           +I +  F  L  ++T+ L+ N F 
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 8/141 (5%)

Query: 310 NIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKG-IYFQV 368
           N+P      + +    N    IP    +   +      +NN +   +     +G      
Sbjct: 29  NLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNS 84

Query: 369 LDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQ 428
           L L  N ++  +P  L  +   +L +L L  N +N  L    F     L +L L  N+LQ
Sbjct: 85  LVLYGNKIT-ELPKSLF-EGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

Query: 429 GVVPKSLANCNMLQVLDLKNN 449
            +   + +    +Q + L  N
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 9/121 (7%)

Query: 356 IPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNC 415
           +PE++        + L  N +   IP          L  ++L  N ++  L+   F    
Sbjct: 30  LPETI------TEIRLEQNTIK-VIPP-GAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLR 80

Query: 416 GLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNF 475
            L  L L GN++  +          LQ+L L  N I+        +  +L +L L  N  
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140

Query: 476 S 476
            
Sbjct: 141 Q 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 23/131 (17%)

Query: 108 HIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPN 166
           HIP          L L+ N  +   ++  +++L  L  +  S+N +   I    F     
Sbjct: 29  HIPQ-----YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASG 82

Query: 167 LETLWLSNNQFENQLPEISNVSSSVLFD-------LDLSGNRLEGPVPISIIFELRNLYT 219
           +  + L++N+       + NV   + F        L L  NR+   V       L ++  
Sbjct: 83  VNEILLTSNR-------LENVQHKM-FKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRL 133

Query: 220 LDLSSNKFSRL 230
           L L  N+ + +
Sbjct: 134 LSLYDNQITTV 144

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 90  ANLTQLFHMDFSSNHFSGHIPS--LHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVL 147
             L QL  ++FS+N  +  I       +  +  + L+ N L       F + L +L  ++
Sbjct: 54  KKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMF-KGLESLKTLM 111

Query: 148 LSHNSLNGSIPRSLFL-LPNLETLWLSNNQF 177
           L  N +   +    F+ L ++  L L +NQ 
Sbjct: 112 LRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 13/121 (10%)

Query: 195 LDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDI 254
           L L+ N         I  +L  L  ++ S+NK + +             +  S ++ + +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-----EGA---FEGASGVNEILL 88

Query: 255 SNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEP--YSISSIRLLDLHSNQLRGNIP 312
           ++N++   + + +++ G  +L  L L  N +  +       +SS+RLL L+ NQ+   + 
Sbjct: 89  TSNRLE-NVQHKMFK-GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

Query: 313 H 313
            
Sbjct: 146 P 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 19/156 (12%)

Query: 156 SIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELR 215
            IP  +        L L+NN+F              L  ++ S N++   +         
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGAS 81

Query: 216 NLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNG-- 273
            +  + L+SN+   ++      ++    K    L  L + +N+I   + N   +   G  
Sbjct: 82  GVNEILLTSNRLENVQ-----HKM---FKGLESLKTLMLRSNRI-TCVGN---DSFIGLS 129

Query: 274 NLNFLNLSHNLLVSLQEP--YSISSIRLLDLHSNQL 307
           ++  L+L  N + ++      ++ S+  L+L +N  
Sbjct: 130 SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 11/143 (7%)

Query: 310 NIPHMSTNTSYVDYSNNHFTFIPADIGNF--MSETEYFFAANNSLVGVIPESVCKG-IYF 366
           +IP     T+ +  +NN FT + A  G F  + +      +NN +   I E   +G    
Sbjct: 29  HIP---QYTAELRLNNNEFTVLEAT-GIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGV 83

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
             + L++N L   +   +  +   +L  L L  N +   + +  F     +++L L  NQ
Sbjct: 84  NEILLTSNRLE-NVQHKMF-KGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQ 140

Query: 427 LQGVVPKSLANCNMLQVLDLKNN 449
           +  V P +    + L  L+L  N
Sbjct: 141 ITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 6/111 (5%)

Query: 394 VLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD 453
            L L  N      +  IF +   L+ ++   N++  +   +    + +  + L +N + +
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 454 NFPCWLGNASSLQVLVLQSNNFSGHISCPRNNV--SWPLLQIVDLASNKFS 502
                     SL+ L+L+SN     I+C  N+       ++++ L  N+ +
Sbjct: 96  VQHKMFKGLESLKTLMLRSN----RITCVGNDSFIGLSSVRLLSLYDNQIT 142

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 44/182 (24%), Positives = 64/182 (35%), Gaps = 36/182 (19%)

Query: 300 LDLHSNQLRGNIP---HMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVI 356
           LDL S  L           T  ++++   N    + A + + ++E               
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT------------ 87

Query: 357 PESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCG 416
                       L L+NN L+ ++P   +    T L  L LG N L  +L   +F R   
Sbjct: 88  ------------LGLANNQLA-SLPL-GVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTK 132

Query: 417 LQILDLGGNQLQGV---VPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSN 473
           L+ L L  NQLQ +       L N   LQ L L  N +             LQ + L  N
Sbjct: 133 LKELRLNTNQLQSIPAGAFDKLTN---LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

Query: 474 NF 475
            F
Sbjct: 190 QF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 35/141 (24%), Positives = 52/141 (36%), Gaps = 12/141 (8%)

Query: 315 STNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNN 374
           +     VD        +P+ I    ++TE     +  L  +   +         L+L  N
Sbjct: 13  NEGKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN 69

Query: 375 NLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPK- 433
            L  T+ A  +    T LG L L  N L  +L   +F     L  L LGGNQL+ +    
Sbjct: 70  QLQ-TLSAG-VFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGV 126

Query: 434 --SLANCNMLQVLDLKNNHIS 452
              L     L+ L L  N + 
Sbjct: 127 FDRLTK---LKELRLNTNQLQ 144

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 46/159 (28%), Positives = 65/159 (40%), Gaps = 10/159 (6%)

Query: 24  ETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSI-GNLENLTWVEVRRCNFT 82
           E LDL    L   S   F   + L  L L       TL   +  +L  L  + +      
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 83  GPIPPSM-ANLTQLFHMDFSSNHFSGHIPS--LHKSRNLKYLDLSFNNLSGGISSTFWEQ 139
             +P  +  +LTQL  +    N     +PS    +   LK L L+ N L    +  F ++
Sbjct: 97  S-LPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAF-DK 153

Query: 140 LVNLNLVLLSHNSLNGSIPRSLF-LLPNLETLWLSNNQF 177
           L NL  + LS N L  S+P   F  L  L+T+ L  NQF
Sbjct: 154 LTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 41/191 (21%)

Query: 119 KYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLF-LLPNLETLWLSNNQF 177
           + LDL    L+  +S   +  L  L  + L +N L  ++   +F  L  L TL L+NNQ 
Sbjct: 38  EKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQ- 94

Query: 178 ENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKP 237
                 ++++   V FD                   L  L  L L  N+   L       
Sbjct: 95  ------LASLPLGV-FD------------------HLTQLDKLYLGGNQLKSL-----PS 124

Query: 238 RVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPY--SIS 295
            V   L   ++L  L ++ NQ+   IP   ++    NL  L+LS N L S+       + 
Sbjct: 125 GVFDRL---TKLKELRLNTNQLQ-SIPAGAFD-KLTNLQTLSLSTNQLQSVPHGAFDRLG 179

Query: 296 SIRLLDLHSNQ 306
            ++ + L  NQ
Sbjct: 180 KLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 8/149 (5%)

Query: 80  NFTGPIPPSMANLTQLFHMDFSSNHFSGHIPS--LHKSRNLKYLDLSFNNLSGGISSTFW 137
                   +   LT+L  ++   N     + +        L  L L+ N L+      F 
Sbjct: 46  GLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLGVF- 103

Query: 138 EQLVNLNLVLLSHNSLNGSIPRSLF-LLPNLETLWLSNNQFENQLPEISNVSSSVLFDLD 196
           + L  L+ + L  N L  S+P  +F  L  L+ L L+ NQ ++ +P  +    + L  L 
Sbjct: 104 DHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLS 161

Query: 197 LSGNRLEGPVPISIIFELRNLYTLDLSSN 225
           LS N+L+  VP      L  L T+ L  N
Sbjct: 162 LSTNQLQS-VPHGAFDRLGKLQTITLFGN 189

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 4/96 (4%)

Query: 108 HIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL-LPN 166
            +  L  + NL  L +        +       L  L  + +  + L   +    F   P 
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 167 LETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRL 202
           L  L LS N  E+   +     S  L +L LSGN L
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLS--LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 3e-05
 Identities = 21/114 (18%), Positives = 32/114 (28%), Gaps = 22/114 (19%)

Query: 150 HNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFD------LDLSGNRLE 203
                      L    NL  L++ N Q       + ++    L        L +  + L 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQ------HLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 204 GPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNN 257
             V          L  L+LS N    L       + +  L     L  L +S N
Sbjct: 70  -FVAPDAFHFTPRLSRLNLSFNALESLS-----WKTVQGLS----LQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 1/86 (1%)

Query: 390 TTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNN 449
             L  L +        L          L+ L +  + L+ V P +      L  L+L  N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 450 HISDNFPCWLGNASSLQVLVLQSNNF 475
            +       +    SLQ LVL  N  
Sbjct: 91  ALESLSWKTVQG-LSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 5e-04
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 14/98 (14%)

Query: 214 LRNLYTLDLSSNKFSRLRLASSKPRVIP--ILKNQSQLSGLDISNNQIPGEIPNWIWEVG 271
             NL  L + + +  +          +    L+   +L  L I  + +   +    +   
Sbjct: 30  AENLTELYIENQQHLQ---------HLELRDLRGLGELRNLTIVKSGL-RFVAPDAFH-F 78

Query: 272 NGNLNFLNLSHNLLVSLQE-PYSISSIRLLDLHSNQLR 308
              L+ LNLS N L SL        S++ L L  N L 
Sbjct: 79  TPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 7e-04
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 2/84 (2%)

Query: 563 TSIDFSSNNFEGPIPEEM-GRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 621
           T +   +      +          L  L +  + L    P +F    ++  L+LS N L 
Sbjct: 34  TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93

Query: 622 GKIPAQLASLNFLSVLNLSYNNLV 645
             +  +      L  L LS N L 
Sbjct: 94  -SLSWKTVQGLSLQELVLSGNPLH 116

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 34/116 (29%), Positives = 47/116 (40%), Gaps = 13/116 (11%)

Query: 145 LVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSS-SVLFDLDLSGNRLE 203
           LVL +  S  G +         LE L   N      L  I+N+   + L  L+LS NR+ 
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTIN----VGLTSIANLPKLNKLKKLELSDNRVS 77

Query: 204 GPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQI 259
           G     +  +  NL  L+LS NK   L         I  LK    L  LD+ N ++
Sbjct: 78  G-GLEVLAEKCPNLTHLNLSGNKIKDL-------STIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 4/111 (3%)

Query: 67  NLENLTWVEVRRCNFT-GPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSF 125
              ++  + +       G +        +L  +   +   +  I +L K   LK L+LS 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKKLELSD 73

Query: 126 NNLSGGISSTFWEQLVNLNLVLLSHNSLNG-SIPRSLFLLPNLETLWLSNN 175
           N +S G      E+  NL  + LS N +   S    L  L NL++L L N 
Sbjct: 74  NRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 23/117 (19%)

Query: 116 RNLKYLDLSFNNLS--GGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLS 173
             L++L      L+    +       L  L  + LS N ++G +       PNL  L LS
Sbjct: 42  EELEFLSTINVGLTSIANLPK-----LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 174 NNQFENQLPEISNVSS-SVLFDLDLSGNRLEGPVPIS--------IIFELRNLYTLD 221
            N+ ++ L  I  +     L  LDL          ++        +   L  L  LD
Sbjct: 97  GNKIKD-LSTIEPLKKLENLKSLDLFNC------EVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 7/118 (5%)

Query: 384 LIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQV 443
           L  ++ + +  L L  +  N    + +      L+ L      L  +   +L   N L+ 
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKK 68

Query: 444 LDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS--GHISCPRNNVSWPLLQIVDLASN 499
           L+L +N +S           +L  L L  N       I   +       L+ +DL + 
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL---ENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 368 VLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQL 427
           VLD S +N  G +        E  L  L+     L  ++++   P+   L+ L+L  N++
Sbjct: 23  VLDNSRSNE-GKLEGLTDEFEE--LEFLSTINVGLT-SIAN--LPKLNKLKKLELSDNRV 76

Query: 428 QGVVPKSLANCNMLQVLDLKNNHISD-NFPCWLGNASSLQVLVLQSN 473
            G +      C  L  L+L  N I D +    L    +L+ L L + 
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 569 SNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQL 628
           S + EG +      F+ L  L+  +  LT SI ++   L +++ L+LS N +SG +    
Sbjct: 27  SRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLA 84

Query: 629 ASLNFLSVLNLSYNNL 644
                L+ LNLS N +
Sbjct: 85  EKCPNLTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 15/126 (11%)

Query: 183 EISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPI 242
           E+ N + S + +L L  +R        +  E   L  L   +   +           I  
Sbjct: 10  ELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS----------IAN 59

Query: 243 LKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSI---RL 299
           L   ++L  L++S+N++ G     + E    NL  LNLS N +  L     +  +   + 
Sbjct: 60  LPKLNKLKKLELSDNRVSG-GLEVLAE-KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117

Query: 300 LDLHSN 305
           LDL + 
Sbjct: 118 LDLFNC 123

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 44/180 (24%), Positives = 67/180 (37%), Gaps = 20/180 (11%)

Query: 278 LNLSHNLLVSLQEPYSISSIRLLDLHSNQLR--GNIPHMSTNTSYVDYSNNHFTFIPADI 335
            NL    +        ++SI  +  +++ ++    I ++  N  Y+    N    I A  
Sbjct: 24  ANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL-PNVRYLALGGNKLHDISA-- 80

Query: 336 GNF--MSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLG 393
                ++   Y     N L  +      K    + L L  N L  ++P   +    T L 
Sbjct: 81  --LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDG-VFDKLTNLT 136

Query: 394 VLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQ----GVVPKSLANCNMLQVLDLKNN 449
            LNL  N L  +L   +F +   L  LDL  NQLQ    GV  K L     L+ L L  N
Sbjct: 137 YLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK-LTQ---LKDLRLYQN 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 16/161 (9%)

Query: 23  LETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSI-GNLENLTWVEVRRCNF 81
           +  L L  N+L    +    + ++L  LIL+G     +LP+ +   L NL  + +     
Sbjct: 65  VRYLALGGNKL--HDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL 121

Query: 82  TGPIPPSMANLTQLFHMDFSSNHFSGHIPSL-----HKSRNLKYLDLSFNNLSGGISSTF 136
                     LT L +++ + N     + SL      K  NL  LDLS+N L       F
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQ----LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177

Query: 137 WEQLVNLNLVLLSHNSLNGSIPRSLF-LLPNLETLWLSNNQ 176
            ++L  L  + L  N L  S+P  +F  L +L+ +WL +N 
Sbjct: 178 -DKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 48/201 (23%), Positives = 97/201 (48%), Gaps = 30/201 (14%)

Query: 119 KYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLN--GSIPRSLFLLPNLETLWLSNNQ 176
              +L   +++    +    +L +++ ++ +++ +     I      LPN+  L L  N+
Sbjct: 22  IKANLKKKSVT---DAVTQNELNSIDQIIANNSDIKSVQGIQY----LPNVRYLALGGNK 74

Query: 177 FENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSK 236
               +  +  +++  L  L L+GN+L+  +P  +  +L NL  L L  N+     L S  
Sbjct: 75  LH-DISALKELTN--LTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQ-----LQSLP 125

Query: 237 PRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSI-- 294
             V   L N   L+ L++++NQ+   +P  +++    NL  L+LS+N L SL  P  +  
Sbjct: 126 DGVFDKLTN---LTYLNLAHNQLQ-SLPKGVFD-KLTNLTELDLSYNQLQSL--PEGVFD 178

Query: 295 --SSIRLLDLHSNQLRGNIPH 313
             + ++ L L+ NQL+ ++P 
Sbjct: 179 KLTQLKDLRLYQNQLK-SVPD 198

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 40/161 (24%), Positives = 64/161 (39%), Gaps = 16/161 (9%)

Query: 22  TLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIG---NLENLTWVEVRR 78
           +++ +  + + +   S+       ++R L L G          I     L NLT++ +  
Sbjct: 42  SIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLH-----DISALKELTNLTYLILTG 94

Query: 79  CNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPS--LHKSRNLKYLDLSFNNLSGGISSTF 136
                        LT L  +    N     +P     K  NL YL+L+ N L       F
Sbjct: 95  NQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVF 153

Query: 137 WEQLVNLNLVLLSHNSLNGSIPRSLF-LLPNLETLWLSNNQ 176
            ++L NL  + LS+N L  S+P  +F  L  L+ L L  NQ
Sbjct: 154 -DKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQ 192

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 13/117 (11%)

Query: 144 NLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSS-SVLFDLDLSGNRL 202
            LVL +  S +G I        NLE L L N      L  +SN+     L  L+LS NR+
Sbjct: 28  ELVLDNCKSNDGKIEGLTAEFVNLEFLSLIN----VGLISVSNLPKLPKLKKLELSENRI 83

Query: 203 EGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQI 259
            G     +  +L NL  L+LS NK   +         +  LK    L  LD+ N ++
Sbjct: 84  FG-GLDMLAEKLPNLTHLNLSGNKLKDI-------STLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 85  IPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLN 144
           I    A    L  +   +      + +L K   LK L+LS N +  G      E+L NL 
Sbjct: 41  IEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELSENRIF-GGLDMLAEKLPNLT 98

Query: 145 LVLLSHNSLNG-SIPRSLFLLPNLETLWLSNN 175
            + LS N L   S    L  L  L++L L N 
Sbjct: 99  HLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 7e-06
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 19/120 (15%)

Query: 116 RNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNN 175
            NL++L L    L    S +   +L  L  + LS N + G +      LPNL  L LS N
Sbjct: 49  VNLEFLSLINVGLI---SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105

Query: 176 QFENQLPEISNVSS-SVLFDLDLSGNRLEGPVPIS--------IIFELRNLYTLDLSSNK 226
           + ++ +  +  +     L  LDL          ++        +   L  L  LD    +
Sbjct: 106 KLKD-ISTLEPLKKLECLKSLDLFNC------EVTNLNDYRESVFKLLPQLTYLDGYDRE 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 7/118 (5%)

Query: 384 LIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQV 443
           L  ++   +  L L     N    + +      L+ L L    L  V   +L     L+ 
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKK 75

Query: 444 LDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS--GHISCPRNNVSWPLLQIVDLASN 499
           L+L  N I            +L  L L  N       +   +       L+ +DL + 
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL---ECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 368 VLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQL 427
           VLD   +N         +      L  L+L    L    S +  P+   L+ L+L  N++
Sbjct: 30  VLDNCKSNDGKIEG---LTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKLELSENRI 83

Query: 428 QGVVPKSLANCNMLQVLDLKNNHISD-NFPCWLGNASSLQVLVLQSN 473
            G +         L  L+L  N + D +    L     L+ L L + 
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 15/128 (11%)

Query: 183 EISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPI 242
           E+ N + + + +L L   +        +  E  NL  L L +               +  
Sbjct: 17  ELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS----------VSN 66

Query: 243 LKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSI---RL 299
           L    +L  L++S N+I     + + E    NL  LNLS N L  +     +  +   + 
Sbjct: 67  LPKLPKLKKLELSENRI-FGGLDMLAE-KLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124

Query: 300 LDLHSNQL 307
           LDL + ++
Sbjct: 125 LDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 16/122 (13%)

Query: 164 LPNLETLWLSNNQFENQLPEISNVSSSV--LFDLDLSGNRLEGPVPISIIFELRNLYTLD 221
              +  L L N +  +   +I  +++    L  L L    L     +S + +L  L  L+
Sbjct: 23  PAAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLE 77

Query: 222 LSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLS 281
           LS N+               + +    L+ L++S N++  +I           L  L+L 
Sbjct: 78  LSENRIFGGL--------DMLAEKLPNLTHLNLSGNKL-KDISTLEPLKKLECLKSLDLF 128

Query: 282 HN 283
           + 
Sbjct: 129 NC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 569 SNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQL 628
             + +G I      F +L  L++ +  L  S+ S+   L +++ L+LS N + G +    
Sbjct: 34  CKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLA 91

Query: 629 ASLNFLSVLNLSYNNL 644
             L  L+ LNLS N L
Sbjct: 92  EKLPNLTHLNLSGNKL 107

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 6/133 (4%)

Query: 98  MDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSI 157
           +  ++            +   + LDL    +   I +     L   + +  S N +   +
Sbjct: 2   VKLTAELIE-QAAQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIR-KL 57

Query: 158 PRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNL 217
                LL  L+TL ++NN+    + E  + +   L +L L+ N L     +  +  L++L
Sbjct: 58  -DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115

Query: 218 YTLDLSSNKFSRL 230
             L +  N  +  
Sbjct: 116 TYLCILRNPVTNK 128

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 21/145 (14%)

Query: 87  PSMANLTQLFHMDFSSNHFSGHIPSLHKS-RNLKYLDLSFNNLSGGISSTFWEQLVNLNL 145
               N  +   +D         I +L  +      +D S N +        +  L  L  
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR---KLDGFPLLRRLKT 68

Query: 146 VLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSS-SVLFDLDLSGNRLEG 204
           +L+++N +          LP+L  L L+NN     L ++  ++S   L  L +  N    
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRN---- 123

Query: 205 PVPIS--------IIFELRNLYTLD 221
             P++        +I+++  +  LD
Sbjct: 124 --PVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 7/108 (6%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
           + LDL    +        +  +      ++   N +   L    FP    L+ L +  N+
Sbjct: 22  RELDLRGYKIPVIEN---LGATLDQFDAIDFSDNEIR-KLDG--FPLLRRLKTLLVNNNR 75

Query: 427 LQGVVPKSLANCNMLQVLDLKNNHISD-NFPCWLGNASSLQVLVLQSN 473
           +  +          L  L L NN + +      L +  SL  L +  N
Sbjct: 76  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 7/85 (8%)

Query: 417 LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS 476
              +D   N+++ +          L+ L + NN I             L  L+L +N+  
Sbjct: 44  FDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

Query: 477 --GHISCPRNNVSWPLLQIVDLASN 499
             G +    +      L  + +  N
Sbjct: 102 ELGDLDPLASL---KSLTYLCILRN 123

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 29/123 (23%), Positives = 42/123 (34%), Gaps = 16/123 (13%)

Query: 369 LDLSNNNLSGT---IPACLIAQSETTLGVLNLGRNNLNGT----LSDTIFPRNCGLQILD 421
           L L  N+L          L+   +  +  L L  N L       L + +   N  +  L 
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLS 189

Query: 422 LGGNQL--QGVVP--KSLANCNMLQVLDLKNNHISDNFPCWLGNA----SSLQVLVLQSN 473
           L    L  +G+      L     LQ L++  N   D     L  A     SL++L L  N
Sbjct: 190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249

Query: 474 NFS 476
             S
Sbjct: 250 ELS 252

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 34/246 (13%), Positives = 69/246 (28%), Gaps = 36/246 (14%)

Query: 88  SMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVL 147
             + L       +   +            +L+ L+L+   ++    +     L +    L
Sbjct: 47  PPSELLDHLFFHYEFQNQRFS---AEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHAL 103

Query: 148 ----LSHNSLNGSIPRSLF-LLPNLETLWLSNNQFENQ----LPEISNVSSSVLFDLDLS 198
               L+   L+ +  R+L  +      L L  N    +    L ++       +  L LS
Sbjct: 104 DEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLS 163

Query: 199 GNRL--EGPVPISIIFEL-RNLYTLDLSSNKFSR---LRLASSKPRVIPILKNQSQLSGL 252
            N L   G   +        ++  L L            LA+        L    QL  L
Sbjct: 164 NNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-------LDRNRQLQEL 216

Query: 253 DISNNQIPGEIPNWIWEV--GNGNLNFLNLSHN---------LLVSLQEPYSISSIRLLD 301
           +++ N         +      + +L  L+L  N         L          + + +  
Sbjct: 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSL 276

Query: 302 LHSNQL 307
                +
Sbjct: 277 TEGTAV 282

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 51/404 (12%), Positives = 106/404 (26%), Gaps = 105/404 (25%)

Query: 104 HFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL 163
                I +L    N + +      L   +      +L++    L  H        +    
Sbjct: 17  QLGCPIKNLDALENAQAIKKKLGKLGRQVLPP--SELLDH---LFFHYEFQN---QRFSA 68

Query: 164 --LPNLETLWLSNNQFENQ----LPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNL 217
             L +L  L L+  +        +  +       L +++L+  +L+     +++      
Sbjct: 69  EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRA 128

Query: 218 YTLDLSSNKFSR---LRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEV--GN 272
             L L  N         L         +L +Q Q++ L +SNN +       + E   GN
Sbjct: 129 RKLGLQLNSLGPEACKDLRDL------LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN 182

Query: 273 GNLNFLNLSHNLL---------VSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDY 323
            ++  L+L H  L           L        ++ L++  N                  
Sbjct: 183 TSVTHLSLLHTGLGDEGLELLAAQLDRN---RQLQELNVAYNGAG--------------- 224

Query: 324 SNNHFTFIPADIG-NFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPA 382
                     D     ++        + SL              ++L L  N L  +   
Sbjct: 225 ----------DTAALALARA---AREHPSL--------------ELLHLYFNEL-SSEGR 256

Query: 383 CLIAQ------SETTLGVLNLGRNNL--------------NGTLSDTIFPRNCGLQILDL 422
            ++            + V       +                +       R+  L + DL
Sbjct: 257 QVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDL 316

Query: 423 GGNQLQGVVPKSLANC----NMLQVLDLKNNHISDNFPCWLGNA 462
             ++   + P   A        ++ L  +          W    
Sbjct: 317 EDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQ 360

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 20/128 (15%)

Query: 367 QVLDLSNNNLSGTIPACLIA---QSETTLGVLNLGRNNLNGT----LSDTIFPRNCGLQI 419
             L LSNN L       ++       T++  L+L    L       L+  +  RN  LQ 
Sbjct: 158 TTLRLSNNPL-TAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL-DRNRQLQE 215

Query: 420 LDLGGNQLQGVVPKSLA----NCNMLQVLDLKNNHISDNFPCWLG-------NASSLQVL 468
           L++  N        +LA        L++L L  N +S      L          + + V 
Sbjct: 216 LNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVS 275

Query: 469 VLQSNNFS 476
           + +    S
Sbjct: 276 LTEGTAVS 283

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 10/103 (9%)

Query: 384 LIAQSETTLGVLNLGRNNLNG----TLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCN 439
             A+  ++L  LNL    +       ++  +      L  ++L   QL     ++L    
Sbjct: 66  FSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF 125

Query: 440 M-LQVLDLKNNHISDNFPCWLG-----NASSLQVLVLQSNNFS 476
           +  + L L+ N +       L      +   +  L L +N  +
Sbjct: 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT 168

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 44/163 (26%), Positives = 66/163 (40%), Gaps = 14/163 (8%)

Query: 315 STNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNN 374
           S + + V+  +   T +P  I    ++T Y     NSL  +      +      L L  N
Sbjct: 6   SCSGTTVECYSQGRTSVPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN 62

Query: 375 NLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQ----GV 430
            L  ++P   +    T+L  LNL  N L  +L + +F +   L+ L L  NQLQ    GV
Sbjct: 63  KLQ-SLPNG-VFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGV 119

Query: 431 VPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSN 473
             K L     L+ L L  N +           +SLQ + L  N
Sbjct: 120 FDK-LTQ---LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 19/116 (16%)

Query: 119 KYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLF-LLPNLETLWLSNNQF 177
            YLDL  N+L   + +  +++L +L  + L  N L  S+P  +F  L +L  L LS NQ 
Sbjct: 31  TYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQL 88

Query: 178 ENQLPEISNVSSSVLFD-------LDLSGNRLEGPVPISIIFELRNLYTLDLSSNK 226
           ++ LP       + +FD       L L+ N+L+  +P  +  +L  L  L L  N+
Sbjct: 89  QS-LP-------NGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQ 135

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 85  IPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLN 144
           IP  +  L          N F+     L   ++L  +DLS N +S   + +F   +  L 
Sbjct: 29  IPRDVTEL------YLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSF-SNMTQLL 81

Query: 145 LVLLSHNSLNGSIPRSLF-LLPNLETLWLSNNQ 176
            ++LS+N L   IP   F  L +L  L L  N 
Sbjct: 82  TLILSYNRLR-CIPPRTFDGLKSLRLLSLHGND 113

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 7/129 (5%)

Query: 321 VDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTI 380
           V  SN     +P  I     +    +   N    ++P+ +    +  ++DLSNN +S T+
Sbjct: 15  VRCSNKGLKVLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TL 69

Query: 381 PACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNM 440
                +   T L  L L  N L   +    F     L++L L GN +  V   +  + + 
Sbjct: 70  SNQSFSNM-TQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA 127

Query: 441 LQVLDLKNN 449
           L  L +  N
Sbjct: 128 LSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 12/99 (12%)

Query: 85  IPPSMANLTQLFHMDFSSNHFSGHIPSL-----HKSRNLKYLDLSFNNLSGGISSTFWEQ 139
           +P  ++N   L  +D S+N     I +L          L  L LS+N L      TF + 
Sbjct: 46  VPKELSNYKHLTLIDLSNNR----ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF-DG 100

Query: 140 LVNLNLVLLSHNSLNGSIPRSLF-LLPNLETLWLSNNQF 177
           L +L L+ L  N ++  +P   F  L  L  L +  N  
Sbjct: 101 LKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 3e-05
 Identities = 26/194 (13%), Positives = 54/194 (27%), Gaps = 39/194 (20%)

Query: 79  CNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSG----GISS 134
                 + P +  +  L ++     +            NLK L++    L       I  
Sbjct: 158 WIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRP--NLKSLEIISGGLPDSVVEDILG 215

Query: 135 TFWEQLVNLNLVLLSHNSLNGSIPRSLFLL------PNLETLWLSNNQFENQLPEISNVS 188
           +    L  L L +   +            L      PNL+ L + + + +N + E     
Sbjct: 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE----- 270

Query: 189 SSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQ 248
                                    L  L T+D+S+   +          ++  +     
Sbjct: 271 ------------------MFLESDILPQLETMDISAGVLTDEGARL----LLDHVDKIKH 308

Query: 249 LSGLDISNNQIPGE 262
           L  +++  N +  E
Sbjct: 309 LKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 581 GRFKSLYALNMSHNALTGSIPSSFGN---LKQIESLDLSMNNLSGK----IPAQLASLNF 633
            RF +L  L +        +   F     L Q+E++D+S   L+ +    +   +  +  
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 634 LSVLNLSYNNL 644
           L  +N+ YN L
Sbjct: 309 LKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.0 bits (100), Expect = 2e-04
 Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 32/154 (20%)

Query: 18  LQVPTLETLDLSEN--------QLLQGSLPNFPKNSSLRNLIL----SGTGFSGTLPD-- 63
              P L++L++            +L   LPN      L  L+L       GF G +    
Sbjct: 190 KPRPNLKSLEIISGGLPDSVVEDILGSDLPN------LEKLVLYVGVEDYGFDGDMNVFR 243

Query: 64  ---SIGNLENLTWVEVRRCNFTGPIPPSMAN---LTQLFHMDFSSNHFSGH-----IPSL 112
              S     NL W+ +        +         L QL  MD S+   +       +  +
Sbjct: 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV 303

Query: 113 HKSRNLKYLDLSFNNLSGGISSTFWEQL-VNLNL 145
            K ++LK++++ +N LS  +     + L + +++
Sbjct: 304 DKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDV 337

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 65/484 (13%), Positives = 140/484 (28%), Gaps = 105/484 (21%)

Query: 21  PTLETLDLSENQLLQGSLPNFPKN-SSLRNLILSG-TGFSGTLPDSIG-NLENLTWVEVR 77
             LE + L    +    L    K+  + + L+LS   GFS     +I     NL  +++R
Sbjct: 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR 164

Query: 78  RCNFTGPIPPSMA----NLTQLFHMDFSSNHFSGHIPSL----HKSRNLKYLDLSFNNLS 129
             +        ++      T L  ++ S         +L     +  NLK L L+     
Sbjct: 165 ESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224

Query: 130 GGISSTFWE--QLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNV 187
             +++      QL  L     +              L   + L                 
Sbjct: 225 EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL----------------- 267

Query: 188 SSSVLFDLDLSGNRLEGPVPISIIFE-LRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQ 246
                    LSG     P  +  ++     L TL+LS               ++ +L   
Sbjct: 268 -------RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ-------SYDLVKLLCQC 313

Query: 247 SQLSGLDISNNQIPGEI-PNWIWEVGNG--NLNFLNLSHNLLVSLQEPYSIS--SIRLLD 301
            +L  L + +      I    +  + +   +L  L +  +    ++   +++   +  + 
Sbjct: 314 PKLQRLWVLDY-----IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368

Query: 302 LHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVC 361
           +   +L             V Y     T                   N +L+ +      
Sbjct: 369 MGCPKLE-----------SVLYFCRQMT-------------------NAALITIA--RNR 396

Query: 362 KGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRN-------NLNGTLSDTIFP-- 412
             +      L            L       +G   +  +       +L+G L+D +F   
Sbjct: 397 PNM--TRFRLCIIEPKAPDYLTL---EPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYI 451

Query: 413 -RNCG-LQILDLGGNQLQGVVPKSLA-NCNMLQVLDLKNNHISDN-FPCWLGNASSLQVL 468
                 +++L +       +    +   C+ L+ L++++    D           +++ L
Sbjct: 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL 511

Query: 469 VLQS 472
            + S
Sbjct: 512 WMSS 515

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 44/280 (15%), Positives = 85/280 (30%), Gaps = 24/280 (8%)

Query: 1   TLDLSECGLQGKFPEKILQV----PTLETLDLSENQLLQ---GSLPNFPKNS-SLRNLIL 52
           TL + E     K  + + ++     +LE L+    +  +     L    +N  SL ++ +
Sbjct: 168 TLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV 227

Query: 53  SGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSG--HIP 110
                   L        NL        N    +P    NL     +      + G   +P
Sbjct: 228 GDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMP 286

Query: 111 SLHK-SRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLET 169
            L   +  ++ LDL +  L      T  ++  NL ++   +   +  +         L+ 
Sbjct: 287 ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346

Query: 170 LWLSN-NQFENQLPEISNVSSSVLF----------DLDLSGNRLEGPVPISIIFELRNLY 218
           L +      +    E   VS   L            + +  + +      SI   L+NL 
Sbjct: 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLC 406

Query: 219 TLDLSS-NKFSRLRLASSKPRVIPILKNQSQLSGLDISNN 257
              L   ++  R+        V  +L    +L        
Sbjct: 407 DFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 9/119 (7%)

Query: 108 HIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLF-LLPN 166
            IP      +   L L+ N L    S   + +L +L  + L  N L   I  + F    +
Sbjct: 26  DIPL-----HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASH 79

Query: 167 LETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSN 225
           ++ L L  N+ +  +     +    L  L+L  N++   V       L +L +L+L+SN
Sbjct: 80  IQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 7/130 (5%)

Query: 321 VDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIY-FQVLDLSNNNLSGT 379
           VD +      IP DI      T      +N L  +  + +   +     L+L  N L+  
Sbjct: 13  VDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-G 68

Query: 380 IPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCN 439
           I      +  + +  L LG N +   +S+ +F     L+ L+L  NQ+  V+P S  + N
Sbjct: 69  IEPNAF-EGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126

Query: 440 MLQVLDLKNN 449
            L  L+L +N
Sbjct: 127 SLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 91  NLTQLFHMDFSSNHFSGHIPS--LHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLL 148
            L  L  ++   N  +G I       + +++ L L  N +    +  F   L  L  + L
Sbjct: 52  RLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIKEISNKMF-LGLHQLKTLNL 109

Query: 149 SHNSLNGSIPRSLF-LLPNLETLWLSNNQF 177
             N ++  +    F  L +L +L L++N F
Sbjct: 110 YDNQIS-CVMPGSFEHLNSLTSLNLASNPF 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	650
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.69
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.62
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.52
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.47
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.4
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.37
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.34
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.28
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.26
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.06
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.0
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.79
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.53
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.52
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.49
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.2
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.06
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.57
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.39
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.24
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.14
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	87.72
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	82.83

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6.5e-65  Score=561.84  Aligned_cols=623  Identities=30%  Similarity=0.433  Sum_probs=521.7

Q ss_pred             eecCCCCCccc---ccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCC--CCCCCCCCcEEEc
Q 043523            2 LDLSECGLQGK---FPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPD--SIGNLENLTWVEV   76 (650)
Q Consensus         2 L~l~~~~i~~~---~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~L   76 (650)
                      |+++++.+.+.   .+.++.++++|+.++++.+.+. ..+..|..+++|++|+|++|.+.+.+|.  .++++++|++|++
T Consensus        55 L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L  133 (768)
T 3rgz_A           55 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV  133 (768)
T ss_dssp             EECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEEC
T ss_pred             EECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEEC
Confidence            78999999987   8889999999999999999873 3456899999999999999999988888  9999999999999


Q ss_pred             CCCccccCCCcCc-cCCCCCcEEEccCCcccccCCc----cccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCC
Q 043523           77 RRCNFTGPIPPSM-ANLTQLFHMDFSSNHFSGHIPS----LHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHN  151 (650)
Q Consensus        77 ~~~~l~~~~~~~l-~~l~~L~~L~l~~~~i~~~~~~----~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~  151 (650)
                      ++|.+.+..|..+ .++++|++|++++|.+.+..+.    +..+++|++|++++|.+.+..+   +..+++|++|++++|
T Consensus       134 s~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n  210 (768)
T 3rgz_A          134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSN  210 (768)
T ss_dssp             CSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSS
T ss_pred             cCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCC
Confidence            9999998777765 8999999999999999876653    6788999999999999986544   378999999999999


Q ss_pred             cCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCcccccc
Q 043523          152 SLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLR  231 (650)
Q Consensus       152 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  231 (650)
                      .+....+. +..+++|++|++++|.+....+.. ...+++|+.|++++|.+.+.+|..   .+++|+.|++++|.++.  
T Consensus       211 ~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~--  283 (768)
T 3rgz_A          211 NFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTG--  283 (768)
T ss_dssp             CCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEE--
T ss_pred             cCCCCCcc-cccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCC--
Confidence            99976666 999999999999999988655543 346899999999999998777753   78999999999998872  


Q ss_pred             ccCCCCCCCCC-CCC-CCCCcEEEccCCcCCCCCChhHHhhcCcccceeeecccccc-CCcC--cccCCcccEEEeccCc
Q 043523          232 LASSKPRVIPI-LKN-QSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLV-SLQE--PYSISSIRLLDLHSNQ  306 (650)
Q Consensus       232 ~~~~~~~~l~~-l~~-~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~--~~~l~~L~~L~l~~~~  306 (650)
                             .++. +.. +++|++|++++|.+.+..|.++....  +|++|++++|.+. .++.  ...+++|++|++++|.
T Consensus       284 -------~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~  354 (768)
T 3rgz_A          284 -------EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS--LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE  354 (768)
T ss_dssp             -------SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT--TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred             -------ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC--CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence                   2332 433 58999999999999988998887654  5999999999987 6664  4568999999999999


Q ss_pred             CCCCCCCCC----CCccEEecCCCcCC-CCchhhhh-ccCCccEEEccCCcccccccccccCCCcccEEECcCccccccC
Q 043523          307 LRGNIPHMS----TNTSYVDYSNNHFT-FIPADIGN-FMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTI  380 (650)
Q Consensus       307 l~~~~~~~~----~~L~~L~l~~~~i~-~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  380 (650)
                      +.+..+..+    .+++++++++|+++ .++..+.. .++.++++++++|.+.+..|..+..+++|+.|++++|.+.+..
T Consensus       355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  434 (768)
T 3rgz_A          355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI  434 (768)
T ss_dssp             EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred             cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc
Confidence            987766643    38999999999987 45544433 2678999999999999999999999999999999999999889


Q ss_pred             ChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhh
Q 043523          381 PACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLG  460 (650)
Q Consensus       381 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  460 (650)
                      |..+....  +|++|++++|.+.+.++.. +..+++|++|++++|++++..|..+..+++|++|+|++|++.+..|..+.
T Consensus       435 p~~l~~l~--~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~  511 (768)
T 3rgz_A          435 PSSLGSLS--KLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG  511 (768)
T ss_dssp             CGGGGGCT--TCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred             cHHHhcCC--CCCEEECCCCcccCcCCHH-HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence            98887765  9999999999999777766 88999999999999999999999999999999999999999988999999


Q ss_pred             cCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCccccccee--------
Q 043523          461 NASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRY--------  532 (650)
Q Consensus       461 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~--------  532 (650)
                      .+++|++|++++|++.+..  +..+..+++|++|++++|++.+.+|..+............. ......+..        
T Consensus       512 ~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  588 (768)
T 3rgz_A          512 RLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA-GKRYVYIKNDGMKKECH  588 (768)
T ss_dssp             GCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC-SCEEEEEECCSCCTTCC
T ss_pred             cCCCCCEEECCCCcccCcC--CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc-ccccccccccccccccc
Confidence            9999999999999998766  78899999999999999999999987764322111100000 000000000        


Q ss_pred             --------ecc--------CCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccC
Q 043523          533 --------VIS--------SNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNAL  596 (650)
Q Consensus       533 --------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i  596 (650)
                              ...        ..............+.....+..++.++.||+++|.+++.++..+..+++|+.|+|++|++
T Consensus       589 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  668 (768)
T 3rgz_A          589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI  668 (768)
T ss_dssp             SSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCcc
Confidence                    000        0000000001222333344556788999999999999999999999999999999999999


Q ss_pred             cccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCcccCCC
Q 043523          597 TGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT  650 (650)
Q Consensus       597 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~  650 (650)
                      ++.+|..|+++++|++||+++|++++.+|..+.++++|+.||+++|+++|.+|+
T Consensus       669 ~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             CCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            999999999999999999999999999999999999999999999999999996

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.9e-61  Score=530.26  Aligned_cols=608  Identities=28%  Similarity=0.356  Sum_probs=478.2

Q ss_pred             ecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCC--CCCCCCcccEEEccCCcCcCCCCCCC-CCCCCCcEEEcCCC
Q 043523            3 DLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLP--NFPKNSSLRNLILSGTGFSGTLPDSI-GNLENLTWVEVRRC   79 (650)
Q Consensus         3 ~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~~-~~l~~L~~L~L~~~   79 (650)
                      +++.+++. ..|..|+++++|++|+|++|.+....+.  .|..+++|++|+|++|.+.+..|..+ .++++|++|++++|
T Consensus        83 ~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n  161 (768)
T 3rgz_A           83 FLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN  161 (768)
T ss_dssp             ECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred             CCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence            34444443 2458899999999999999998654455  78899999999999999987777665 89999999999999


Q ss_pred             ccccCCCcC---ccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCC
Q 043523           80 NFTGPIPPS---MANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGS  156 (650)
Q Consensus        80 ~l~~~~~~~---l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~  156 (650)
                      .+++..|..   +.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+.++.  ++++++|++|++++|.+...
T Consensus       162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~  238 (768)
T 3rgz_A          162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGD  238 (768)
T ss_dssp             CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSC
T ss_pred             ccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCc
Confidence            999877776   8899999999999999986554 37889999999999999876665  79999999999999999988


Q ss_pred             cchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCC
Q 043523          157 IPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSK  236 (650)
Q Consensus       157 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  236 (650)
                      .+.++..+++|++|++++|.+....+..   .+++|++|++++|.+.+.+|..++..+++|+.|++++|.+..       
T Consensus       239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~-------  308 (768)
T 3rgz_A          239 FSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG-------  308 (768)
T ss_dssp             HHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE-------
T ss_pred             ccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC-------
Confidence            9999999999999999999887655543   678999999999999988888875556999999999998873       


Q ss_pred             CCCCCC-CCCCCCCcEEEccCCcCCCCCChh-HHhhcCcccceeeecccccc-CCcCcc-cCC-cccEEEeccCcCCCCC
Q 043523          237 PRVIPI-LKNQSQLSGLDISNNQIPGEIPNW-IWEVGNGNLNFLNLSHNLLV-SLQEPY-SIS-SIRLLDLHSNQLRGNI  311 (650)
Q Consensus       237 ~~~l~~-l~~~~~L~~L~l~~~~i~~~~~~~-~~~~~~~~L~~L~l~~~~l~-~l~~~~-~l~-~L~~L~l~~~~l~~~~  311 (650)
                        .++. +..+++|++|++++|.+.+.+|.. +...  ++|++|++++|.+. .++... .++ +|+.+++++|.+.+..
T Consensus       309 --~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~  384 (768)
T 3rgz_A          309 --AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM--RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI  384 (768)
T ss_dssp             --CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC--TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC
T ss_pred             --ccchHHhcCCCccEEECCCCcccCcCCHHHHhcC--CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc
Confidence              3333 788999999999999998778866 4433  46999999999887 455443 355 9999999999988655


Q ss_pred             CCC-----CCCccEEecCCCcCC-CCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhh
Q 043523          312 PHM-----STNTSYVDYSNNHFT-FIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLI  385 (650)
Q Consensus       312 ~~~-----~~~L~~L~l~~~~i~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  385 (650)
                      +..     +++++++++++|+++ .++..+. .+++|+.+++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+.
T Consensus       385 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~  463 (768)
T 3rgz_A          385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM  463 (768)
T ss_dssp             CTTTTCSTTCCCCEEECCSSEEEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred             ChhhhhcccCCccEEECCCCccccccCHHHh-cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence            543     567999999999998 5555554 589999999999999999999999999999999999999988998877


Q ss_pred             hccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCC
Q 043523          386 AQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSL  465 (650)
Q Consensus       386 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L  465 (650)
                      ...  +|++|++++|.+.+.++.. +..+++|++|++++|++++..|..+..+++|++|+|++|++.+..|..+..+++|
T Consensus       464 ~l~--~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  540 (768)
T 3rgz_A          464 YVK--TLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL  540 (768)
T ss_dssp             GCT--TCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred             CCC--CceEEEecCCcccCcCCHH-HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence            655  9999999999999777665 8999999999999999999999999999999999999999998899999999999


Q ss_pred             CeEEccCcccceecCCCCCCCCCCCCCeeeCCCc-cccc--------------------ccChHHHHhHHhhHhhh----
Q 043523          466 QVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASN-KFSG--------------------RLSQKWLLTMEEMMVAE----  520 (650)
Q Consensus       466 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~--------------------~~~~~~~~~l~~l~~~~----  520 (650)
                      ++|++++|++.+..  +..+.....+..+++..+ .+..                    ......+..+.......    
T Consensus       541 ~~L~Ls~N~l~g~i--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  618 (768)
T 3rgz_A          541 IWLDLNTNLFNGTI--PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR  618 (768)
T ss_dssp             CEEECCSSEEESBC--CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred             CEEECCCCccCCcC--ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence            99999999987443  333333222222222110 0000                    00000000000000000    


Q ss_pred             ------cccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccc
Q 043523          521 ------TKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHN  594 (650)
Q Consensus       521 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n  594 (650)
                            ...+..++.+.....+...+.        +..+..+..++.|+.|++++|.+++.++..+..+++|+.|+|++|
T Consensus       619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~--------g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N  690 (768)
T 3rgz_A          619 VYGGHTSPTFDNNGSMMFLDMSYNMLS--------GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN  690 (768)
T ss_dssp             EEEEECCCSCSSSBCCCEEECCSSCCB--------SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             eecccCchhhhccccccEEECcCCccc--------ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC
Confidence                  001112222222222222111        122233457889999999999999999999999999999999999


Q ss_pred             cCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCc
Q 043523          595 ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN  643 (650)
Q Consensus       595 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~  643 (650)
                      ++++.+|..++.+++|++|++++|++++.+|.. ..+..+......+|+
T Consensus       691 ~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~  738 (768)
T 3rgz_A          691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNP  738 (768)
T ss_dssp             CCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCT
T ss_pred             cccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCc
Confidence            999999999999999999999999999988854 233444445555664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.8e-55  Score=479.69  Aligned_cols=588  Identities=22%  Similarity=0.213  Sum_probs=404.2

Q ss_pred             eecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCcc
Q 043523            2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNF   81 (650)
Q Consensus         2 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l   81 (650)
                      ++.++++++ ..|..+.  +++++|++++|.++......|.++++|++|++++|.+.+..|..++++++|++|++++|.+
T Consensus         9 ~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l   85 (680)
T 1ziw_A            9 ADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL   85 (680)
T ss_dssp             EECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred             eECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence            355556665 3444443  5677777777776555555666677777777777777666666667777777777777777


Q ss_pred             ccCCCcCccCCCCCcEEEccCCcccccCC-ccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchh
Q 043523           82 TGPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRS  160 (650)
Q Consensus        82 ~~~~~~~l~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  160 (650)
                      +...+.+|+++++|++|++++|++...++ .+..+++|++|++++|.+++..+.. +.++++|++|++++|.++...+..
T Consensus        86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~  164 (680)
T 1ziw_A           86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEE  164 (680)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBCHHH
T ss_pred             CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCcccccCHHH
Confidence            64444467777777777777777665553 4566677777777777666444333 566777777777777766555544


Q ss_pred             cc--CCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHh--hcCCCCcEEeCCCCccccccccCCC
Q 043523          161 LF--LLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISII--FELRNLYTLDLSSNKFSRLRLASSK  236 (650)
Q Consensus       161 l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~  236 (650)
                      +.  .+++|++|++++|.+....+. ....+.+|+.+++.++.+.......+.  ...++|+.|++++|.+.......  
T Consensus       165 ~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~--  241 (680)
T 1ziw_A          165 LDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT--  241 (680)
T ss_dssp             HGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT--
T ss_pred             hhccccccccEEECCCCcccccChh-hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH--
Confidence            43  446677777777766543332 223355666666666654421111110  12356777777776665332111  


Q ss_pred             CCCCCCCCCC--CCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcC--cccCCcccEEEeccCcCCC---
Q 043523          237 PRVIPILKNQ--SQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQE--PYSISSIRLLDLHSNQLRG---  309 (650)
Q Consensus       237 ~~~l~~l~~~--~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~l~~---  309 (650)
                            +..+  ++|++|++++|.+.+..+.++...  ++|++|++++|.+..+.+  ...+++|+.+++++|...+   
T Consensus       242 ------~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~  313 (680)
T 1ziw_A          242 ------FLGLKWTNLTMLDLSYNNLNVVGNDSFAWL--PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS  313 (680)
T ss_dssp             ------TGGGGGSCCCEEECTTSCCCEECTTTTTTC--TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---
T ss_pred             ------hhccCcCCCCEEECCCCCcCccCcccccCc--ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc
Confidence                  3333  237777777776665555554433  347777777776665432  2346777777776654332   


Q ss_pred             ---------CCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCccccc--cccccc--CCCcccEEECcCccc
Q 043523          310 ---------NIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGV--IPESVC--KGIYFQVLDLSNNNL  376 (650)
Q Consensus       310 ---------~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~l~--~~~~L~~L~l~~~~~  376 (650)
                               .....+++|+++++++|+++.++...+..+++|+.+++++|.+...  ....+.  ..++|+.|++++|.+
T Consensus       314 ~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l  393 (680)
T 1ziw_A          314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI  393 (680)
T ss_dssp             ---CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC
T ss_pred             cccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC
Confidence                     1233457788888888888877777667788888888888764322  222232  235788899999888


Q ss_pred             cccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccc--cc
Q 043523          377 SGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHIS--DN  454 (650)
Q Consensus       377 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~--~~  454 (650)
                      .+..+..+....  +|++|++++|.+.+.++...|..+++|++|++++|++.+..+..|..+++|++|++++|.+.  +.
T Consensus       394 ~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  471 (680)
T 1ziw_A          394 SKIESDAFSWLG--HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS  471 (680)
T ss_dssp             CEECTTTTTTCT--TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTC
T ss_pred             CeEChhhhhCCC--CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccccc
Confidence            876666665443  89999999998887777777888999999999999988788888888999999999999876  35


Q ss_pred             cchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeec
Q 043523          455 FPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVI  534 (650)
Q Consensus       455 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~  534 (650)
                      .|..+..+++|++|++++|.++...  +..+.++++|++|++++|.++.......                         
T Consensus       472 ~p~~~~~l~~L~~L~Ls~N~l~~i~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------------------------  524 (680)
T 1ziw_A          472 SPSPFQPLRNLTILDLSNNNIANIN--DDMLEGLEKLEILDLQHNNLARLWKHAN-------------------------  524 (680)
T ss_dssp             SSCTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCGGGGSTTS-------------------------
T ss_pred             CCcccccCCCCCEEECCCCCCCcCC--hhhhccccccCEEeCCCCCccccchhhc-------------------------
Confidence            6778888999999999999887654  5567888999999999998753211100                         


Q ss_pred             cCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeee
Q 043523          535 SSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLD  614 (650)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~  614 (650)
                                    .+.....+..++.|++|++++|.+..+.+..+..+++|+.|++++|++++..+..|..+++|++|+
T Consensus       525 --------------~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  590 (680)
T 1ziw_A          525 --------------PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN  590 (680)
T ss_dssp             --------------TTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             --------------cCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEE
Confidence                          000111235678999999999999988777899999999999999999987778889999999999


Q ss_pred             CCCCcCCccCCcccc-CCCCCCeEEccCCcCccc
Q 043523          615 LSMNNLSGKIPAQLA-SLNFLSVLNLSYNNLVGK  647 (650)
Q Consensus       615 l~~n~i~~~~~~~l~-~l~~L~~L~l~~n~~~~~  647 (650)
                      +++|++++..+..+. .+++|+.|++++||+...
T Consensus       591 L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             CTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred             CCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence            999999998888887 889999999999998754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.4e-53  Score=468.06  Aligned_cols=567  Identities=21%  Similarity=0.202  Sum_probs=470.3

Q ss_pred             CEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCC
Q 043523           24 ETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSN  103 (650)
Q Consensus        24 ~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~  103 (650)
                      +.++.+++.++.+. ..+.  +++++|++++|.+.+..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus         7 ~~~~cs~~~L~~ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A            7 EVADCSHLKLTQVP-DDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             SEEECCSSCCSSCC-SCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred             CeeECCCCCccccc-cccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence            67999999985543 3443  79999999999999777778999999999999999999888999999999999999999


Q ss_pred             cccccCC-ccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCc
Q 043523          104 HFSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLP  182 (650)
Q Consensus       104 ~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  182 (650)
                      .+...++ .+..+++|++|++++|.+.+..+.. ++++++|++|++++|.+....+..+..+++|++|++++|.+....+
T Consensus        84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  162 (680)
T 1ziw_A           84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP-FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS  162 (680)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCT-TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred             ccCccChhhhccCCCCCEEECCCCccCccChhH-ccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence            9998777 4888999999999999998544444 8999999999999999998888889999999999999999886555


Q ss_pred             hhh-hcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCC
Q 043523          183 EIS-NVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPG  261 (650)
Q Consensus       183 ~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~  261 (650)
                      ... ...+++|+.|++++|.+.+. +...+..+++|+.++++++.+.......     +......++|++|++++|.+.+
T Consensus       163 ~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~-----~~~~l~~~~L~~L~L~~n~l~~  236 (680)
T 1ziw_A          163 EELDIFANSSLKKLELSSNQIKEF-SPGCFHAIGRLFGLFLNNVQLGPSLTEK-----LCLELANTSIRNLSLSNSQLST  236 (680)
T ss_dssp             HHHGGGTTCEESEEECTTCCCCCB-CTTGGGGSSEECEEECTTCCCHHHHHHH-----HHHHHTTSCCCEEECTTSCCCE
T ss_pred             HHhhccccccccEEECCCCccccc-ChhhhhhhhhhhhhhccccccChhhHHH-----HHHHhhhccccEEEccCCcccc
Confidence            432 33568999999999999854 4455589999999999998765321110     0001124689999999999998


Q ss_pred             CCChhHHhhcCcccceeeeccccccCCcC--cccCCcccEEEeccCcCCCCCC---CCCCCccEEecCCCcCC-------
Q 043523          262 EIPNWIWEVGNGNLNFLNLSHNLLVSLQE--PYSISSIRLLDLHSNQLRGNIP---HMSTNTSYVDYSNNHFT-------  329 (650)
Q Consensus       262 ~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~~~i~-------  329 (650)
                      ..|.++.....++|+.|++++|.+..+++  ...+++|+++++++|.+.+..+   ..+++|++++++++...       
T Consensus       237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~  316 (680)
T 1ziw_A          237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS  316 (680)
T ss_dssp             ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------
T ss_pred             cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccc
Confidence            88888877665679999999999988754  3458999999999999886544   45678999999876533       


Q ss_pred             --CCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCcccccc--CChhhhhccccCccEEEccCccCCCc
Q 043523          330 --FIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGT--IPACLIAQSETTLGVLNLGRNNLNGT  405 (650)
Q Consensus       330 --~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~  405 (650)
                        .+....+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+...  ....+.....++|+.|++++|.+.+.
T Consensus       317 lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~  396 (680)
T 1ziw_A          317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI  396 (680)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred             ccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence              23334556689999999999999999999999999999999999975422  22233333335899999999999854


Q ss_pred             CCCcccCCCCCccEEEcCCCccccccc-hhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCC
Q 043523          406 LSDTIFPRNCGLQILDLGGNQLQGVVP-KSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRN  484 (650)
Q Consensus       406 ~~~~~~~~l~~L~~L~ls~~~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  484 (650)
                      .+ ..|..+++|++|++++|.+.+..+ ..+..+++|++|++++|++....+..|..+++|++|++++|.+......+..
T Consensus       397 ~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~  475 (680)
T 1ziw_A          397 ES-DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP  475 (680)
T ss_dssp             CT-TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT
T ss_pred             Ch-hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc
Confidence            44 559999999999999999986554 7899999999999999999998889999999999999999998765555778


Q ss_pred             CCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccE
Q 043523          485 NVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTS  564 (650)
Q Consensus       485 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  564 (650)
                      +.++++|++|++++|.++...+                                               ..+..++.|++
T Consensus       476 ~~~l~~L~~L~Ls~N~l~~i~~-----------------------------------------------~~~~~l~~L~~  508 (680)
T 1ziw_A          476 FQPLRNLTILDLSNNNIANIND-----------------------------------------------DMLEGLEKLEI  508 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCT-----------------------------------------------TTTTTCTTCCE
T ss_pred             cccCCCCCEEECCCCCCCcCCh-----------------------------------------------hhhccccccCE
Confidence            8999999999999998764222                                               22346788999


Q ss_pred             EeCCCCccccCCC--------ccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCe
Q 043523          565 IDFSSNNFEGPIP--------EEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSV  636 (650)
Q Consensus       565 L~l~~~~~~~~~~--------~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~  636 (650)
                      |++++|.+.++..        ..+..+++|++|++++|+++...+.+|+++++|++|++++|+++.+++..|..+++|+.
T Consensus       509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  588 (680)
T 1ziw_A          509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS  588 (680)
T ss_dssp             EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence            9999999986532        24788999999999999999666678999999999999999999999999999999999


Q ss_pred             EEccCCcCcccC
Q 043523          637 LNLSYNNLVGKI  648 (650)
Q Consensus       637 L~l~~n~~~~~~  648 (650)
                      |++++|.+++..
T Consensus       589 L~L~~N~l~~~~  600 (680)
T 1ziw_A          589 LNLQKNLITSVE  600 (680)
T ss_dssp             EECTTSCCCBCC
T ss_pred             EECCCCcCCccC
Confidence            999999999643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.6e-52  Score=449.32  Aligned_cols=541  Identities=19%  Similarity=0.183  Sum_probs=398.4

Q ss_pred             eecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCcc
Q 043523            2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNF   81 (650)
Q Consensus         2 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l   81 (650)
                      ++.++.+++ .+|..+.  +.+++|++++|.++...+..|.++++|++|++++|.+.+..|.+|.++++|++|++++|++
T Consensus        17 ~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   93 (606)
T 3t6q_A           17 YNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL   93 (606)
T ss_dssp             EECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence            345566666 5565554  3789999999999877777889999999999999988877788899999999999999999


Q ss_pred             ccCCCcCccCCCCCcEEEccCCccccc-CCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchh
Q 043523           82 TGPIPPSMANLTQLFHMDFSSNHFSGH-IPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRS  160 (650)
Q Consensus        82 ~~~~~~~l~~l~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  160 (650)
                      ++..|.+|+++++|++|++++|.+... +..+..+++|++|++++|.+.+..... +..+++|++|++++|.+....+..
T Consensus        94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~  172 (606)
T 3t6q_A           94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKED  172 (606)
T ss_dssp             SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHH
T ss_pred             cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhh
Confidence            888888899999999999999988875 346778889999999999887533333 445889999999999888777788


Q ss_pred             ccCCCCCC--EEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCC
Q 043523          161 LFLLPNLE--TLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPR  238 (650)
Q Consensus       161 l~~l~~L~--~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  238 (650)
                      +..+++|+  .+++++|.+....+...  ....|+.+++++|.   ..+ ..+..+.++....+....+..         
T Consensus       173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~---~~~-~~~~~l~~~~l~~l~~~~~~~---------  237 (606)
T 3t6q_A          173 MSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQ---NLL-VIFKGLKNSTIQSLWLGTFED---------  237 (606)
T ss_dssp             HHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCS---CHH-HHHHHTTTCEEEEEECCCCTT---------
T ss_pred             hhhhcccceeEEecCCCccCccChhHh--hhccccccccCCch---hHH-HHhhhccccchhheechhhcc---------
Confidence            88888888  88888888875444432  23578888888875   222 233555554444333222211         


Q ss_pred             CCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCc
Q 043523          239 VIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNT  318 (650)
Q Consensus       239 ~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L  318 (650)
                                +...        ...+..+......+++.+++++|.+..++...                   ...+++|
T Consensus       238 ----------~~~~--------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~-------------------~~~l~~L  280 (606)
T 3t6q_A          238 ----------MDDE--------DISPAVFEGLCEMSVESINLQKHYFFNISSNT-------------------FHCFSGL  280 (606)
T ss_dssp             ----------SCCC--------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT-------------------TTTCTTC
T ss_pred             ----------cccc--------ccChhHhchhhcCceeEEEeecCccCccCHHH-------------------hccccCC
Confidence                      1100        01112222222223555555555554443321                   1122344


Q ss_pred             cEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChh-hhhccccCccEEEc
Q 043523          319 SYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPAC-LIAQSETTLGVLNL  397 (650)
Q Consensus       319 ~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l  397 (650)
                      ++|++++|+++.+|..+. .+++|+++++++|.+.+..+..+..+++|+.|++++|.+.+.++.. +..  .++|++|++
T Consensus       281 ~~L~l~~n~l~~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--l~~L~~L~l  357 (606)
T 3t6q_A          281 QELDLTATHLSELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN--LENLRELDL  357 (606)
T ss_dssp             SEEECTTSCCSCCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT--CTTCCEEEC
T ss_pred             CEEeccCCccCCCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc--cCcCCEEEC
Confidence            445555555555554443 3677777888877777777777888888888888888777555543 333  348888888


Q ss_pred             cCccCCCcCC-CcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccc-hhhhcCCCCCeEEccCccc
Q 043523          398 GRNNLNGTLS-DTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFP-CWLGNASSLQVLVLQSNNF  475 (650)
Q Consensus       398 ~~~~~~~~~~-~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~~  475 (650)
                      ++|.+.+... ...+..+++|++|++++|++.+..+..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+
T Consensus       358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  437 (606)
T 3t6q_A          358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL  437 (606)
T ss_dssp             CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred             CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence            8888774431 3348888999999999999888888889999999999999999887554 3478899999999999988


Q ss_pred             ceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhc
Q 043523          476 SGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETML  555 (650)
Q Consensus       476 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  555 (650)
                      ....  +..+..+++|++|++++|++.+....                                            ....
T Consensus       438 ~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~--------------------------------------------~~~~  471 (606)
T 3t6q_A          438 DISS--EQLFDGLPALQHLNLQGNHFPKGNIQ--------------------------------------------KTNS  471 (606)
T ss_dssp             BTTC--TTTTTTCTTCCEEECTTCBCGGGEEC--------------------------------------------SSCG
T ss_pred             CCcC--HHHHhCCCCCCEEECCCCCCCccccc--------------------------------------------cchh
Confidence            7554  66678889999999999987531100                                            0012


Q ss_pred             ccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCC
Q 043523          556 LKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLS  635 (650)
Q Consensus       556 ~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~  635 (650)
                      +..+++|++|++++|.+.++.+..+..+++|++|++++|++++..|+++.++++| +|++++|++++.+|..+..+++|+
T Consensus       472 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~  550 (606)
T 3t6q_A          472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQR  550 (606)
T ss_dssp             GGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSS
T ss_pred             hccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCC
Confidence            3467889999999999998888999999999999999999999999999999999 999999999999999999999999


Q ss_pred             eEEccCCcCcccC
Q 043523          636 VLNLSYNNLVGKI  648 (650)
Q Consensus       636 ~L~l~~n~~~~~~  648 (650)
                      .|++++|++....
T Consensus       551 ~L~l~~N~~~c~c  563 (606)
T 3t6q_A          551 TINLRQNPLDCTC  563 (606)
T ss_dssp             EEECTTCCEECSG
T ss_pred             EEeCCCCCccccC
Confidence            9999999988643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.1e-50  Score=439.07  Aligned_cols=459  Identities=19%  Similarity=0.147  Sum_probs=306.4

Q ss_pred             eecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCcc
Q 043523            2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNF   81 (650)
Q Consensus         2 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l   81 (650)
                      ++.++++++ ..|..+.  +++++|++++|.++......|.++++|++|++++|.+.+..|..|.++++|++|++++|.+
T Consensus        16 ~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l   92 (606)
T 3vq2_A           16 YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI   92 (606)
T ss_dssp             EECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             eEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence            567778888 5555554  7899999999999887777999999999999999999977888999999999999999999


Q ss_pred             ccCCCcCccCCCCCcEEEccCCcccccC-CccccCCCcCEEeCCCCcCcc-cCChHHHhccccCCeEEccCCcCCCCcch
Q 043523           82 TGPIPPSMANLTQLFHMDFSSNHFSGHI-PSLHKSRNLKYLDLSFNNLSG-GISSTFWEQLVNLNLVLLSHNSLNGSIPR  159 (650)
Q Consensus        82 ~~~~~~~l~~l~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  159 (650)
                      ++..|.+|+++++|++|++++|.+...+ ..+..+++|++|++++|.+.+ .++.. ++++++|++|++++|.+....+.
T Consensus        93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A           93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTT
T ss_pred             cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecChh
Confidence            9888999999999999999999998776 468888999999999999875 34555 89999999999999999877777


Q ss_pred             hccCCCCC----CEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccC-
Q 043523          160 SLFLLPNL----ETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLAS-  234 (650)
Q Consensus       160 ~l~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-  234 (650)
                      .+..++++    .++++++|.+....+.. .. ..+|+.+++++|.+.+......+..++.++.+.+..+.+....... 
T Consensus       172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~-~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~  249 (606)
T 3vq2_A          172 DLQFLRENPQVNLSLDMSLNPIDFIQDQA-FQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI  249 (606)
T ss_dssp             TTHHHHHCTTCCCEEECTTCCCCEECTTT-TT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred             hhhhhhccccccceeeccCCCcceeCccc-cc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence            67665555    48999999887443333 22 3389999999998865444555688899988887655443211000 


Q ss_pred             CCCCCCCCCCCCCCCcEEEc-cCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCC
Q 043523          235 SKPRVIPILKNQSQLSGLDI-SNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPH  313 (650)
Q Consensus       235 ~~~~~l~~l~~~~~L~~L~l-~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~  313 (650)
                      .....+..+... .++.+++ ..+.+.+..|. +..  .++|+.|++++|.+..++....++                  
T Consensus       250 ~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~--l~~L~~L~l~~~~~~~l~~l~~~~------------------  307 (606)
T 3vq2_A          250 FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHC--LANVSAMSLAGVSIKYLEDVPKHF------------------  307 (606)
T ss_dssp             CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGG--GTTCSEEEEESCCCCCCCCCCTTC------------------
T ss_pred             cChHHhhhhhhc-cHhheeccccccccccccc-ccc--CCCCCEEEecCccchhhhhccccc------------------
Confidence            000011111111 2344444 33333333332 111  123444444444444444333334                  


Q ss_pred             CCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccC--ChhhhhccccC
Q 043523          314 MSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTI--PACLIAQSETT  391 (650)
Q Consensus       314 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~  391 (650)
                         +++++++++|++..+|..   .+++|+.+++++|...+..  .+..+++|+.|++++|.+.+..  +..+...  ++
T Consensus       308 ---~L~~L~l~~n~l~~lp~~---~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~--~~  377 (606)
T 3vq2_A          308 ---KWQSLSIIRCQLKQFPTL---DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGT--NS  377 (606)
T ss_dssp             ---CCSEEEEESCCCSSCCCC---CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCC--SC
T ss_pred             ---cCCEEEcccccCcccccC---CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccC--Cc
Confidence               444444445455444422   3677777777777444332  4556777777777777766442  4443333  36


Q ss_pred             ccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccc-hhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523          392 LGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVP-KSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL  470 (650)
Q Consensus       392 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  470 (650)
                      |++|++++|.+. .++ ..|..+++|++|++++|++.+..+ ..+..+++|++|++++|++.+..+..+.++++|++|++
T Consensus       378 L~~L~L~~n~l~-~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  455 (606)
T 3vq2_A          378 LRHLDLSFNGAI-IMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM  455 (606)
T ss_dssp             CCEEECCSCSEE-EEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred             ccEeECCCCccc-cch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence            777777777665 333 336667777777777777765555 56666777777777777777666666667777777777


Q ss_pred             cCccccee-cCCCCCCCCCCCCCeeeCCCcccc
Q 043523          471 QSNNFSGH-ISCPRNNVSWPLLQIVDLASNKFS  502 (650)
Q Consensus       471 ~~n~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~  502 (650)
                      ++|++.+. .  +..+..+++|++|++++|.++
T Consensus       456 ~~n~l~~~~~--~~~~~~l~~L~~L~Ls~n~l~  486 (606)
T 3vq2_A          456 AGNSFKDNTL--SNVFANTTNLTFLDLSKCQLE  486 (606)
T ss_dssp             TTCEEGGGEE--CSCCTTCTTCCEEECTTSCCC
T ss_pred             CCCcCCCcch--HHhhccCCCCCEEECCCCcCC
Confidence            77766542 2  444555555565555555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.9e-49  Score=424.63  Aligned_cols=518  Identities=18%  Similarity=0.157  Sum_probs=373.8

Q ss_pred             CEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCC
Q 043523           24 ETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSN  103 (650)
Q Consensus        24 ~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~  103 (650)
                      +.++.++..++.. +..+.  +++++|++++|.+++..|..|.++++|++|++++|++....|.+|.++++|++|++++|
T Consensus        15 ~~~~c~~~~l~~i-P~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n   91 (606)
T 3t6q_A           15 KTYNCENLGLNEI-PGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN   91 (606)
T ss_dssp             TEEECTTSCCSSC-CTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             ceEECCCCCcccC-cCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence            3566666665333 23343  36777777777777666667777777777777777777666777777777777777777


Q ss_pred             cccccCC-ccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCc
Q 043523          104 HFSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLP  182 (650)
Q Consensus       104 ~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  182 (650)
                      .+....+ .+..+++|++|++++|.+++..+.. ++++++|++|++++|.+.......+..+                  
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l------------------  152 (606)
T 3t6q_A           92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGFPT------------------  152 (606)
T ss_dssp             CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSC-CTTCTTCCEEECCSSCCCCCCCCTTCCC------------------
T ss_pred             cccccChhhhcccccccEeeccccCcccCCcch-hccCCcccEEECCCCcccccCcccccCC------------------
Confidence            7665433 4555666666666666665322222 4555555555555555544332333334                  


Q ss_pred             hhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCc--EEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCC
Q 043523          183 EISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLY--TLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIP  260 (650)
Q Consensus       183 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~--~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~  260 (650)
                             ++|+.|++++|.+. .++...+..+++|+  .|++++|.+..+...         .....+|++++++++.  
T Consensus       153 -------~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~---------~~~~~~L~~L~l~~~~--  213 (606)
T 3t6q_A          153 -------EKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPG---------AFDSAVFQSLNFGGTQ--  213 (606)
T ss_dssp             -------TTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEECTT---------TTTTCEEEEEECTTCS--
T ss_pred             -------cccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCccCccChh---------HhhhccccccccCCch--
Confidence                   44555555555554 33334446777777  777777777643222         2233567888888775  


Q ss_pred             CCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccC
Q 043523          261 GEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMS  340 (650)
Q Consensus       261 ~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~  340 (650)
                       ..+..+.......++.+.+....  .         +....+....+.+..   ..+++.+++++|+++.++...+..++
T Consensus       214 -~~~~~~~~l~~~~l~~l~~~~~~--~---------~~~~~i~~~~~~~l~---~~~L~~L~l~~n~l~~~~~~~~~~l~  278 (606)
T 3t6q_A          214 -NLLVIFKGLKNSTIQSLWLGTFE--D---------MDDEDISPAVFEGLC---EMSVESINLQKHYFFNISSNTFHCFS  278 (606)
T ss_dssp             -CHHHHHHHTTTCEEEEEECCCCT--T---------SCCCCCCGGGGGGGG---GSEEEEEECTTCCCSSCCTTTTTTCT
T ss_pred             -hHHHHhhhccccchhheechhhc--c---------ccccccChhHhchhh---cCceeEEEeecCccCccCHHHhcccc
Confidence             33444444333223333332221  0         000011111111100   12678888888888888888777899


Q ss_pred             CccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEE
Q 043523          341 ETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQIL  420 (650)
Q Consensus       341 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  420 (650)
                      +|+++++++|.+. .+|..+..+++|+.|++++|.+.+..+..+....  +|++|++++|.+.+.++...+..+++|++|
T Consensus       279 ~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  355 (606)
T 3t6q_A          279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP--SLTHLSIKGNTKRLELGTGCLENLENLREL  355 (606)
T ss_dssp             TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT--TCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred             CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccC--cCCEEECCCCCcccccchhhhhccCcCCEE
Confidence            9999999999988 6788899999999999999999866666665544  999999999999888888889999999999


Q ss_pred             EcCCCcccccc--chhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCC
Q 043523          421 DLGGNQLQGVV--PKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLAS  498 (650)
Q Consensus       421 ~ls~~~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~  498 (650)
                      ++++|.+.+..  +..+..+++|++|++++|++.+..+..+..+++|++|++++|++..... ...+..+++|++|++++
T Consensus       356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~  434 (606)
T 3t6q_A          356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA-QSPFQNLHLLKVLNLSH  434 (606)
T ss_dssp             ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT-CCTTTTCTTCCEEECTT
T ss_pred             ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc-chhhhCcccCCEEECCC
Confidence            99999998765  7789999999999999999999888999999999999999999986531 34478899999999999


Q ss_pred             cccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccC---
Q 043523          499 NKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGP---  575 (650)
Q Consensus       499 n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~---  575 (650)
                      |.+....+.                                               .+..++.|++|++++|.+.+.   
T Consensus       435 n~l~~~~~~-----------------------------------------------~~~~l~~L~~L~L~~n~l~~~~~~  467 (606)
T 3t6q_A          435 SLLDISSEQ-----------------------------------------------LFDGLPALQHLNLQGNHFPKGNIQ  467 (606)
T ss_dssp             CCCBTTCTT-----------------------------------------------TTTTCTTCCEEECTTCBCGGGEEC
T ss_pred             CccCCcCHH-----------------------------------------------HHhCCCCCCEEECCCCCCCccccc
Confidence            987643322                                               224678999999999999762   


Q ss_pred             CCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCcccCC
Q 043523          576 IPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP  649 (650)
Q Consensus       576 ~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  649 (650)
                      .+..+..+++|++|++++|++++..|.+|+.+++|++|++++|++++..|+.+.++++| .|++++|.+++..|
T Consensus       468 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~  540 (606)
T 3t6q_A          468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP  540 (606)
T ss_dssp             SSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred             cchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence            33578899999999999999999989999999999999999999999999999999999 99999999997665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3e-49  Score=427.96  Aligned_cols=489  Identities=18%  Similarity=0.154  Sum_probs=409.2

Q ss_pred             CeecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCc
Q 043523            1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN   80 (650)
Q Consensus         1 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~   80 (650)
                      +|++++|.+++..+.+|+++++|++|++++|.++...+..|.++++|++|+|++|.+.+..|..|+++++|++|++++|.
T Consensus        36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~  115 (606)
T 3vq2_A           36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK  115 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSC
T ss_pred             EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCc
Confidence            48999999999999999999999999999999988888899999999999999999997779999999999999999999


Q ss_pred             cccCCCcCccCCCCCcEEEccCCcccc--cCCccccCCCcCEEeCCCCcCcccCChHHHhccccCC----eEEccCCcCC
Q 043523           81 FTGPIPPSMANLTQLFHMDFSSNHFSG--HIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLN----LVLLSHNSLN  154 (650)
Q Consensus        81 l~~~~~~~l~~l~~L~~L~l~~~~i~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~----~L~l~~~~~~  154 (650)
                      +++..+..++++++|++|++++|.+..  .+..+.++++|++|++++|.+++..+.. ++.+++|+    ++++++|.+.
T Consensus       116 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~~l~~L~l~~n~l~  194 (606)
T 3vq2_A          116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND-LQFLRENPQVNLSLDMSLNPID  194 (606)
T ss_dssp             CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT-THHHHHCTTCCCEEECTTCCCC
T ss_pred             cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh-hhhhhccccccceeeccCCCcc
Confidence            997777899999999999999999975  4667899999999999999998655544 66666665    8999999998


Q ss_pred             CCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCc--------------------------------cEEEc-cCCc
Q 043523          155 GSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVL--------------------------------FDLDL-SGNR  201 (650)
Q Consensus       155 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--------------------------------~~L~l-~~~~  201 (650)
                      ...+..+... +|+.|++++|.+...........++.+                                +.+++ ..+.
T Consensus       195 ~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~  273 (606)
T 3vq2_A          195 FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND  273 (606)
T ss_dssp             EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTT
T ss_pred             eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccc
Confidence            6655555544 899999999976521111112223333                                34444 5555


Q ss_pred             CCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeec
Q 043523          202 LEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLS  281 (650)
Q Consensus       202 l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~  281 (650)
                      +.+..|.  +..+++|+.++++++.+..+.          .+..+++|++|++++|.+ +.+|.+    ..++|++|+++
T Consensus       274 ~~~~~~~--~~~l~~L~~L~l~~~~~~~l~----------~l~~~~~L~~L~l~~n~l-~~lp~~----~l~~L~~L~l~  336 (606)
T 3vq2_A          274 FSDDIVK--FHCLANVSAMSLAGVSIKYLE----------DVPKHFKWQSLSIIRCQL-KQFPTL----DLPFLKSLTLT  336 (606)
T ss_dssp             CCGGGGS--CGGGTTCSEEEEESCCCCCCC----------CCCTTCCCSEEEEESCCC-SSCCCC----CCSSCCEEEEE
T ss_pred             ccccccc--cccCCCCCEEEecCccchhhh----------hccccccCCEEEcccccC-cccccC----CCCccceeecc
Confidence            6655554  588999999999999886432          477889999999999999 577743    45679999999


Q ss_pred             cccccCCcCcccCCcccEEEeccCcCCCCC--C---CCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccc
Q 043523          282 HNLLVSLQEPYSISSIRLLDLHSNQLRGNI--P---HMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVI  356 (650)
Q Consensus       282 ~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~--~---~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~  356 (650)
                      +|..........+++|+.+++++|.+.+..  +   ..+++|+++++++|+++.++..+ ..+++|+.+++++|.+.+..
T Consensus       337 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~l~~n~l~~~~  415 (606)
T 3vq2_A          337 MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF-MGLEELQHLDFQHSTLKRVT  415 (606)
T ss_dssp             SCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCC-TTCTTCCEEECTTSEEESTT
T ss_pred             CCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhc-cCCCCCCeeECCCCccCCcc
Confidence            995444335567899999999999887542  2   35689999999999999887444 45899999999999999888


Q ss_pred             c-ccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhc
Q 043523          357 P-ESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSL  435 (650)
Q Consensus       357 ~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~  435 (650)
                      + ..+..+++|+.|++++|.+.+..+..+....  +|++|++++|.+.+......|..+++|++|++++|++++..|..+
T Consensus       416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  493 (606)
T 3vq2_A          416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT--SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF  493 (606)
T ss_dssp             TTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT--TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             ChhhhhccccCCEEECcCCCCCccchhhhcCCC--CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence            7 6888999999999999999887777766554  999999999999875445559999999999999999998889999


Q ss_pred             ccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCC-CCCeeeCCCcccccccChHHHHhHH
Q 043523          436 ANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWP-LLQIVDLASNKFSGRLSQKWLLTME  514 (650)
Q Consensus       436 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~  514 (650)
                      ..+++|++|++++|++.+..|..+.++++|++|++++|+++..   +..+..++ +|++|++++|++.|.++..|+.+|.
T Consensus       494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~---p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l  570 (606)
T 3vq2_A          494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS---KGILQHFPKSLAFFNLTNNSVACICEHQKFLQWV  570 (606)
T ss_dssp             TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE---ESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTT
T ss_pred             cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCccc---CHhHhhhcccCcEEEccCCCcccCCccHHHHHHH
Confidence            9999999999999999998899999999999999999999854   44477777 6999999999999999999887654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-46  Score=404.16  Aligned_cols=514  Identities=19%  Similarity=0.175  Sum_probs=364.9

Q ss_pred             ecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccc
Q 043523            3 DLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFT   82 (650)
Q Consensus         3 ~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~   82 (650)
                      +-++.+++ ..|..+.  ++++.|++++|+++......|.++++|++|++++|.+.+..+..|.++++|++|++++|.++
T Consensus        13 ~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~   89 (570)
T 2z63_A           13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (570)
T ss_dssp             ECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC
Confidence            33445566 4555443  57999999999998888889999999999999999998777888999999999999999999


Q ss_pred             cCCCcCccCCCCCcEEEccCCcccccCC-ccccCCCcCEEeCCCCcCccc-CChHHHhccccCCeEEccCCcCCCCcchh
Q 043523           83 GPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGG-ISSTFWEQLVNLNLVLLSHNSLNGSIPRS  160 (650)
Q Consensus        83 ~~~~~~l~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  160 (650)
                      ...|.+|.++++|++|++++|.+...++ .+..+++|++|++++|.+.+. ++.. ++++++|++|++++|.+....+..
T Consensus        90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~~  168 (570)
T 2z63_A           90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTD  168 (570)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEECGGG
T ss_pred             ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccceecHHH
Confidence            8888899999999999999999987665 578889999999999998753 4555 789999999999999998777777


Q ss_pred             ccCCCCC----CEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCC
Q 043523          161 LFLLPNL----ETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSK  236 (650)
Q Consensus       161 l~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  236 (650)
                      +..+++|    +.+++++|.+....+....  ...|+.+++++|..........+..++.++...+....+.        
T Consensus       169 ~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~--------  238 (570)
T 2z63_A          169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR--------  238 (570)
T ss_dssp             GHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECC--------
T ss_pred             ccchhccchhhhhcccCCCCceecCHHHhc--cCcceeEecccccccccchhhhhcCccccceeeecccccc--------
Confidence            8777777    8899999988754443322  2378888888875443222333466666666555432221        


Q ss_pred             CCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccC-cCCCCCCCCC
Q 043523          237 PRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSN-QLRGNIPHMS  315 (650)
Q Consensus       237 ~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~-~l~~~~~~~~  315 (650)
                              ....++.+  ..        ..+.....-.++.                      +++.++ .+.+..+   
T Consensus       239 --------~~~~l~~~--~~--------~~~~~l~~l~l~~----------------------l~l~~~~~~~~~~~---  275 (570)
T 2z63_A          239 --------NEGNLEKF--DK--------SALEGLCNLTIEE----------------------FRLAYLDYYLDDII---  275 (570)
T ss_dssp             --------CCSSCEEC--CT--------TTTGGGGGSEEEE----------------------EEEEETTEEESCST---
T ss_pred             --------Cchhhhhc--ch--------hhhccccccchhh----------------------hhhhcchhhhhhch---
Confidence                    11111110  00        0011111111222                      233222 1111111   


Q ss_pred             CCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEE
Q 043523          316 TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVL  395 (650)
Q Consensus       316 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L  395 (650)
                                        ..+..+++++.++++++.+. .+|..+..+ +|+.|++++|.+. .+|.    ...++|++|
T Consensus       276 ------------------~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~----~~l~~L~~L  330 (570)
T 2z63_A          276 ------------------DLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT----LKLKSLKRL  330 (570)
T ss_dssp             ------------------TTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB----CBCSSCCEE
T ss_pred             ------------------hhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc----ccccccCEE
Confidence                              11112444445555544444 244445555 6666666666665 3333    123477777


Q ss_pred             EccCccCCCcCCCcccCCCCCccEEEcCCCcccccc--chhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCc
Q 043523          396 NLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVV--PKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSN  473 (650)
Q Consensus       396 ~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n  473 (650)
                      ++++|.+.+..+.   ..+++|++|++++|.+.+..  +..+..+++|++|++++|++.+..+. +..+++|++|++++|
T Consensus       331 ~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n  406 (570)
T 2z63_A          331 TFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS  406 (570)
T ss_dssp             EEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTS
T ss_pred             eCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCC
Confidence            7777776644433   56777888888888877553  66777888888888888888875444 778888888888888


Q ss_pred             ccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchh
Q 043523          474 NFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVET  553 (650)
Q Consensus       474 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  553 (650)
                      .+..... ...+.++++|++|++++|.+....+.                                              
T Consensus       407 ~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------------------------------  439 (570)
T 2z63_A          407 NLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNG----------------------------------------------  439 (570)
T ss_dssp             EEESCTT-SCTTTTCTTCCEEECTTSCCEECCTT----------------------------------------------
T ss_pred             ccccccc-hhhhhcCCCCCEEeCcCCcccccchh----------------------------------------------
Confidence            8765431 24567788888888888876533221                                              


Q ss_pred             hcccCCCcccEEeCCCCccc-cCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCC
Q 043523          554 MLLKVPNIFTSIDFSSNNFE-GPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLN  632 (650)
Q Consensus       554 ~~~~~~~~l~~L~l~~~~~~-~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~  632 (650)
                       .+..++.|++|++++|.+. +..+..+..+++|++|++++|++++..|.+|+.+++|++|++++|++++.++..|.+++
T Consensus       440 -~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  518 (570)
T 2z63_A          440 -IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT  518 (570)
T ss_dssp             -TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             -hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence             2245778888888888886 45667888999999999999999988899999999999999999999998888999999


Q ss_pred             CCCeEEccCCcCcccCCC
Q 043523          633 FLSVLNLSYNNLVGKIPT  650 (650)
Q Consensus       633 ~L~~L~l~~n~~~~~~p~  650 (650)
                      +|+.|++++|++++..|.
T Consensus       519 ~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          519 SLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TCCEEECCSSCBCCCTTT
T ss_pred             CCcEEEecCCcccCCCcc
Confidence            999999999999988773

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-46  Score=417.05  Aligned_cols=540  Identities=20%  Similarity=0.194  Sum_probs=369.1

Q ss_pred             eecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCC-CCCCCCCCCCcEEEcCCCc
Q 043523            2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTL-PDSIGNLENLTWVEVRRCN   80 (650)
Q Consensus         2 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~L~~~~   80 (650)
                      .+.++++++ ..|.   ..+++++|+|++|.++...+..|.++++|++|+|++|...+.+ |..|.++++|++|+|++|.
T Consensus         9 ~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~   84 (844)
T 3j0a_A            9 AFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK   84 (844)
T ss_dssp             EEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred             EEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence            356778888 4454   4578999999999998888889999999999999999555444 7899999999999999999


Q ss_pred             cccCCCcCccCCCCCcEEEccCCccccc-CCc--cccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCc
Q 043523           81 FTGPIPPSMANLTQLFHMDFSSNHFSGH-IPS--LHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSI  157 (650)
Q Consensus        81 l~~~~~~~l~~l~~L~~L~l~~~~i~~~-~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  157 (650)
                      +.+..|.+|.++++|++|++++|.+.+. ++.  +..+++|++|++++|.+++..+...++++++|++|++++|.+....
T Consensus        85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~  164 (844)
T 3j0a_A           85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC  164 (844)
T ss_dssp             CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred             CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence            9988899999999999999999999863 333  7788999999999999986655445899999999999999998888


Q ss_pred             chhccCC--CCCCEEEccCCcCCCCCchhhh-----cCCCCccEEEccCCcCCCCCchhHhhc--CCCCcEEeCCCCccc
Q 043523          158 PRSLFLL--PNLETLWLSNNQFENQLPEISN-----VSSSVLFDLDLSGNRLEGPVPISIIFE--LRNLYTLDLSSNKFS  228 (650)
Q Consensus       158 ~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~~~~~--l~~L~~L~l~~~~~~  228 (650)
                      +..+..+  ++|+.|++++|.+....+....     .....|+.|++++|.+.+..+..+...  .+.++.+.++.+.+.
T Consensus       165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~  244 (844)
T 3j0a_A          165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG  244 (844)
T ss_dssp             SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred             HHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence            8888776  8899999999887753332111     111237777777777665555444222  134455555433221


Q ss_pred             cccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCC
Q 043523          229 RLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLR  308 (650)
Q Consensus       229 ~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~  308 (650)
                      .                       .+..+.+.+.....+.....++++.|++++|.+..++...                
T Consensus       245 ~-----------------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~----------------  285 (844)
T 3j0a_A          245 A-----------------------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV----------------  285 (844)
T ss_dssp             C-----------------------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC----------------
T ss_pred             c-----------------------cccccccCCCChhhhhccccCCccEEECCCCcccccChhh----------------
Confidence            0                       0001111111111111111223444444444443332111                


Q ss_pred             CCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhcc
Q 043523          309 GNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQS  388 (650)
Q Consensus       309 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  388 (650)
                         ...+++|+.|++++|+++.++...+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+....+..+... 
T Consensus       286 ---~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-  361 (844)
T 3j0a_A          286 ---FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL-  361 (844)
T ss_dssp             ---SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC-
T ss_pred             ---hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC-
Confidence               1122344444444444444433444446677777777777766666777777777777777777764444434332 


Q ss_pred             ccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccc-hhhhcCCCCCe
Q 043523          389 ETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFP-CWLGNASSLQV  467 (650)
Q Consensus       389 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~  467 (650)
                       ++|++|++++|.+. .     +..+++|+.|++++|+++ .+|..   ..+++.|++++|++.+... ..+..+++|++
T Consensus       362 -~~L~~L~Ls~N~l~-~-----i~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~  430 (844)
T 3j0a_A          362 -EKLQTLDLRDNALT-T-----IHFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQI  430 (844)
T ss_dssp             -CCCCEEEEETCCSC-C-----CSSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCE
T ss_pred             -CCCCEEECCCCCCC-c-----ccCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccce
Confidence             37777777777765 2     223667888888888877 33332   4578888888888877432 23457888888


Q ss_pred             EEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEe
Q 043523          468 LVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVT  547 (650)
Q Consensus       468 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (650)
                      |++++|+++.... ...+..+++|++|++++|.+....+.                                        
T Consensus       431 L~Ls~N~l~~~~~-~~~~~~~~~L~~L~Ls~N~l~~~~~~----------------------------------------  469 (844)
T 3j0a_A          431 LILNQNRFSSCSG-DQTPSENPSLEQLFLGENMLQLAWET----------------------------------------  469 (844)
T ss_dssp             EEEESCCCCCCCS-SSSSCSCTTCCBCEEESCCCSSSCCS----------------------------------------
T ss_pred             eeCCCCccccccc-ccccccCCccccccCCCCcccccccc----------------------------------------
Confidence            8888888874431 22345578888888888876522110                                        


Q ss_pred             eccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCcc
Q 043523          548 VKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ  627 (650)
Q Consensus       548 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  627 (650)
                        +.....+..++.|+.|++++|.++++.+..+..+++|+.|+|++|++++..+..+.  ++|++|++++|++++..|..
T Consensus       470 --~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~  545 (844)
T 3j0a_A          470 --ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV  545 (844)
T ss_dssp             --CCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred             --ccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH
Confidence              01112234568889999999999988888899999999999999999977666655  89999999999999888876


Q ss_pred             ccCCCCCCeEEccCCcCccc
Q 043523          628 LASLNFLSVLNLSYNNLVGK  647 (650)
Q Consensus       628 l~~l~~L~~L~l~~n~~~~~  647 (650)
                      |   ++|+.+++++|++...
T Consensus       546 ~---~~L~~l~l~~Np~~C~  562 (844)
T 3j0a_A          546 F---VSLSVLDITHNKFICE  562 (844)
T ss_dssp             C---SSCCEEEEEEECCCCS
T ss_pred             h---CCcCEEEecCCCcccc
Confidence            5   4788999999988653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3e-46  Score=399.61  Aligned_cols=497  Identities=17%  Similarity=0.155  Sum_probs=315.6

Q ss_pred             ecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccc
Q 043523            3 DLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFT   82 (650)
Q Consensus         3 ~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~   82 (650)
                      +.++++++ ..|..+.  ++|++|++++|+++...+..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.++
T Consensus        11 ~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~   87 (549)
T 2z81_A           11 DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS   87 (549)
T ss_dssp             ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence            44556666 3444332  67777777777776666667777777777777777777666677777777777777777777


Q ss_pred             cCCCcCccCCCCCcEEEccCCcccc--cCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchh
Q 043523           83 GPIPPSMANLTQLFHMDFSSNHFSG--HIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRS  160 (650)
Q Consensus        83 ~~~~~~l~~l~~L~~L~l~~~~i~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  160 (650)
                      +..|..|+++++|++|++++|.+..  .++.+..+++|++|++++|...+.++...++++++|++|++++|.+....+..
T Consensus        88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  167 (549)
T 2z81_A           88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS  167 (549)
T ss_dssp             SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence            5555567777777777777777764  23456666777777777776333444333566667777777766666555566


Q ss_pred             ccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCC
Q 043523          161 LFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVI  240 (650)
Q Consensus       161 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l  240 (650)
                      +..+++|++|++++|.+.                          .++...+..+++|+.|++++|.++.....     ..
T Consensus       168 l~~l~~L~~L~l~~n~~~--------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~  216 (549)
T 2z81_A          168 LKSIRDIHHLTLHLSESA--------------------------FLLEIFADILSSVRYLELRDTNLARFQFS-----PL  216 (549)
T ss_dssp             TTTCSEEEEEEEECSBST--------------------------THHHHHHHSTTTBSEEEEESCBCTTCCCC-----CC
T ss_pred             hhccccCceEecccCccc--------------------------ccchhhHhhcccccEEEccCCcccccccc-----cc
Confidence            666666666666555443                          34444445567777777777766533211     11


Q ss_pred             CCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccE
Q 043523          241 PILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSY  320 (650)
Q Consensus       241 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~  320 (650)
                      +....+++|+.|+++++.+.+..+..+...                    ...++.++.+++++|.+.+......     
T Consensus       217 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~--------------------~~~~~~L~~l~l~~~~~~~~~~~~~-----  271 (549)
T 2z81_A          217 PVDEVSSPMKKLAFRGSVLTDESFNELLKL--------------------LRYILELSEVEFDDCTLNGLGDFNP-----  271 (549)
T ss_dssp             SSCCCCCCCCEEEEESCEEEHHHHHHHHGG--------------------GGGCTTCCEEEEESCEEECCSCCCC-----
T ss_pred             chhhhhhcccceeccccccchhHHHHHHHH--------------------hhhhccccccccccccccccccccc-----
Confidence            123456678888888887765444433321                    1123444555555554332110000     


Q ss_pred             EecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCc
Q 043523          321 VDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRN  400 (650)
Q Consensus       321 L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  400 (650)
                                ........+++++.+.+.++.+.....                   ....+.....  ..+|++|++++|
T Consensus       272 ----------~~~~~~~~l~~L~~L~l~~~~i~~~~~-------------------~~~l~~~~~~--~~~L~~L~l~~n  320 (549)
T 2z81_A          272 ----------SESDVVSELGKVETVTIRRLHIPQFYL-------------------FYDLSTVYSL--LEKVKRITVENS  320 (549)
T ss_dssp             ----------CTTTCCCCCTTCCEEEEESCBCSCGGG-------------------SCCCCHHHHH--STTCCEEEEESS
T ss_pred             ----------cchhhhhhhcccccccccccccchhhh-------------------cccchhhhhh--cccceEEEeccC
Confidence                      000001123445555554443321100                   0011111111  126777777777


Q ss_pred             cCCCcCCCcccCCCCCccEEEcCCCccccccch---hcccCCCCCEEeCCCCccccccc--hhhhcCCCCCeEEccCccc
Q 043523          401 NLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPK---SLANCNMLQVLDLKNNHISDNFP--CWLGNASSLQVLVLQSNNF  475 (650)
Q Consensus       401 ~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~~L~~L~l~~n~~  475 (650)
                      .+. .++...+..+++|++|++++|++.+..+.   .+..+++|++|++++|++.+..+  ..+..+++|++|++++|++
T Consensus       321 ~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  399 (549)
T 2z81_A          321 KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF  399 (549)
T ss_dssp             CCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             ccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence            765 56655456677888888888887765432   36677888888888888877432  4577788888888888887


Q ss_pred             ceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhc
Q 043523          476 SGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETML  555 (650)
Q Consensus       476 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  555 (650)
                      +.   ++..+..+++|++|++++|.+....                                                  
T Consensus       400 ~~---lp~~~~~~~~L~~L~Ls~N~l~~l~--------------------------------------------------  426 (549)
T 2z81_A          400 HP---MPDSCQWPEKMRFLNLSSTGIRVVK--------------------------------------------------  426 (549)
T ss_dssp             CC---CCSCCCCCTTCCEEECTTSCCSCCC--------------------------------------------------
T ss_pred             cc---CChhhcccccccEEECCCCCccccc--------------------------------------------------
Confidence            63   3566677788888888888764210                                                  


Q ss_pred             ccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCC
Q 043523          556 LKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLS  635 (650)
Q Consensus       556 ~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~  635 (650)
                      ...++.|++|++++|.+++..    ..+++|++|++++|+++ .+|. ...+++|++|++++|++++.+|+.+.++++|+
T Consensus       427 ~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  500 (549)
T 2z81_A          427 TCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ  500 (549)
T ss_dssp             TTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred             chhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence            012467888889888887543    56789999999999998 5555 46788999999999999988888899999999


Q ss_pred             eEEccCCcCcccCC
Q 043523          636 VLNLSYNNLVGKIP  649 (650)
Q Consensus       636 ~L~l~~n~~~~~~p  649 (650)
                      .|++++|++++..|
T Consensus       501 ~L~l~~N~~~~~~~  514 (549)
T 2z81_A          501 KIWLHTNPWDCSCP  514 (549)
T ss_dssp             EEECCSSCBCCCHH
T ss_pred             EEEecCCCccCCCc
Confidence            99999999887654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=8.4e-46  Score=413.52  Aligned_cols=488  Identities=21%  Similarity=0.212  Sum_probs=395.6

Q ss_pred             CeecCCCCCcccccccccCCCCCCEEeCCCCCC-CCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCC
Q 043523            1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQL-LQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRC   79 (650)
Q Consensus         1 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~   79 (650)
                      +|++++|.|++..+..|+++++|++|++++|.. ....+..|.++++|++|+|++|.+.+..|..|.++++|++|++++|
T Consensus        28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n  107 (844)
T 3j0a_A           28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC  107 (844)
T ss_dssp             EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred             EEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence            489999999999999999999999999999954 3445678999999999999999999888999999999999999999


Q ss_pred             ccccCCCcC--ccCCCCCcEEEccCCcccccCC--ccccCCCcCEEeCCCCcCcccCChHHHhcc--ccCCeEEccCCcC
Q 043523           80 NFTGPIPPS--MANLTQLFHMDFSSNHFSGHIP--SLHKSRNLKYLDLSFNNLSGGISSTFWEQL--VNLNLVLLSHNSL  153 (650)
Q Consensus        80 ~l~~~~~~~--l~~l~~L~~L~l~~~~i~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l--~~L~~L~l~~~~~  153 (650)
                      .+++..|..  +.++++|++|++++|.+....+  .+..+++|++|++++|.+.+..+.. +..+  ++|+.|++++|.+
T Consensus       108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L~~n~l  186 (844)
T 3j0a_A          108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSLAANSL  186 (844)
T ss_dssp             CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCEECCSBS
T ss_pred             CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEECCCCcc
Confidence            999766654  9999999999999999987643  5888999999999999998666655 6666  8999999999999


Q ss_pred             CCCcchhccCCCC------CCEEEccCCcCCCCCchhhh-------------------------------------cCCC
Q 043523          154 NGSIPRSLFLLPN------LETLWLSNNQFENQLPEISN-------------------------------------VSSS  190 (650)
Q Consensus       154 ~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~-------------------------------------~~~~  190 (650)
                      ....+..+..+++      |+.|++++|.+....+....                                     ...+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~  266 (844)
T 3j0a_A          187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS  266 (844)
T ss_dssp             CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTS
T ss_pred             ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccC
Confidence            8877776666555      99999999966533221111                                     1136


Q ss_pred             CccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhh
Q 043523          191 VLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEV  270 (650)
Q Consensus       191 ~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~  270 (650)
                      +++.|++++|.+.+ ++...|..+++|+.|++++|.+..+...        .+..+++|++|++++|.+.+..+.++...
T Consensus       267 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~--------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  337 (844)
T 3j0a_A          267 SVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADE--------AFYGLDNLQVLNLSYNLLGELYSSNFYGL  337 (844)
T ss_dssp             CCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCEECTT--------TTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred             CccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCCCChH--------HhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence            78899999998874 4444558889999999999988754322        26778899999999999886667666544


Q ss_pred             cCcccceeeeccccccCCcCc--ccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEcc
Q 043523          271 GNGNLNFLNLSHNLLVSLQEP--YSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAA  348 (650)
Q Consensus       271 ~~~~L~~L~l~~~~l~~l~~~--~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~  348 (650)
                        ++|+.|++++|.+..++..  ..+++|+.|++++|.+.+...  +++++.+++++|+++.++..    ...++.++++
T Consensus       338 --~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~--~~~L~~L~l~~N~l~~l~~~----~~~l~~L~ls  409 (844)
T 3j0a_A          338 --PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF--IPSIPDIFLSGNKLVTLPKI----NLTANLIHLS  409 (844)
T ss_dssp             --TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS--CCSCSEEEEESCCCCCCCCC----CTTCCEEECC
T ss_pred             --CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC--CCCcchhccCCCCccccccc----ccccceeecc
Confidence              4599999999988887653  358999999999998875433  67899999999999877654    5678999999


Q ss_pred             CCccccccc-ccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcC----CCcccCCCCCccEEEcC
Q 043523          349 NNSLVGVIP-ESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTL----SDTIFPRNCGLQILDLG  423 (650)
Q Consensus       349 ~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~l~~L~~L~ls  423 (650)
                      +|.+.+... ..+..+++|+.|++++|.+.+..+.... ...++|++|++++|.+....    ....|..+++|++|+++
T Consensus       410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls  488 (844)
T 3j0a_A          410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP-SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN  488 (844)
T ss_dssp             SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS-CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCC
T ss_pred             cCccccCchhhhhhcCCccceeeCCCCccccccccccc-ccCCccccccCCCCccccccccccchhhhcCcccccEEECC
Confidence            998886533 3456899999999999998854333222 22459999999999987332    23458899999999999


Q ss_pred             CCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCccccc
Q 043523          424 GNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSG  503 (650)
Q Consensus       424 ~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  503 (650)
                      +|++++..+..|..+++|++|+|++|+++.+.+..+.  ++|+.|++++|++++..  +..   +++|+.+++++|++.|
T Consensus       489 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~--~~~---~~~L~~l~l~~Np~~C  561 (844)
T 3j0a_A          489 HNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPN--PDV---FVSLSVLDITHNKFIC  561 (844)
T ss_dssp             HHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCC--SCC---CSSCCEEEEEEECCCC
T ss_pred             CCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCC--hhH---hCCcCEEEecCCCccc
Confidence            9999988889999999999999999999997776665  89999999999998654  333   4689999999999999


Q ss_pred             ccChHHHHhHH
Q 043523          504 RLSQKWLLTME  514 (650)
Q Consensus       504 ~~~~~~~~~l~  514 (650)
                      .++..|+..+.
T Consensus       562 ~c~~~~f~~~~  572 (844)
T 3j0a_A          562 ECELSTFINWL  572 (844)
T ss_dssp             SSSCCSHHHHH
T ss_pred             ccccHHHHHHH
Confidence            99988877654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4e-45  Score=393.13  Aligned_cols=490  Identities=19%  Similarity=0.192  Sum_probs=393.6

Q ss_pred             CeecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCc
Q 043523            1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN   80 (650)
Q Consensus         1 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~   80 (650)
                      +|++++|.+++..+.+|.++++|++|++++|+++...+..|.++++|++|++++|.+.+..+..|+++++|++|++++|.
T Consensus        32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  111 (570)
T 2z63_A           32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN  111 (570)
T ss_dssp             EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc
Confidence            38999999999989999999999999999999988878899999999999999999997778899999999999999999


Q ss_pred             cccCCCcCccCCCCCcEEEccCCcccc--cCCccccCCCcCEEeCCCCcCcccCChHHHhccccC----CeEEccCCcCC
Q 043523           81 FTGPIPPSMANLTQLFHMDFSSNHFSG--HIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNL----NLVLLSHNSLN  154 (650)
Q Consensus        81 l~~~~~~~l~~l~~L~~L~l~~~~i~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L----~~L~l~~~~~~  154 (650)
                      ++...+..++++++|++|++++|.+..  .+..+.++++|++|++++|.+++..+.. ++.+++|    +.+++++|.+.
T Consensus       112 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~~~~~L~l~~n~l~  190 (570)
T 2z63_A          112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMN  190 (570)
T ss_dssp             CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG-GHHHHTCTTCCCEEECTTCCCC
T ss_pred             cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH-ccchhccchhhhhcccCCCCce
Confidence            997666689999999999999999986  4567888999999999999998554444 7888888    89999999999


Q ss_pred             CCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCC-----CCCchhHhhcCCC--CcEEeCCCC-c
Q 043523          155 GSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLE-----GPVPISIIFELRN--LYTLDLSSN-K  226 (650)
Q Consensus       155 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~l~~--L~~L~l~~~-~  226 (650)
                      ...+.++... +|+.+++++|.............+..++...+....+.     ..++...+..+++  ++.++++++ .
T Consensus       191 ~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~  269 (570)
T 2z63_A          191 FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY  269 (570)
T ss_dssp             EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTE
T ss_pred             ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchh
Confidence            7777777665 89999999885432111122223444544433221111     1233333344443  344555444 2


Q ss_pred             cccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCc
Q 043523          227 FSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQ  306 (650)
Q Consensus       227 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~  306 (650)
                      +..        .....+..+++|++|+++++.+. .+|.++...   +|++|++++|.+..++. ..+++|+.+++++|.
T Consensus       270 ~~~--------~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~---~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~  336 (570)
T 2z63_A          270 YLD--------DIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF---GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNK  336 (570)
T ss_dssp             EES--------CSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC---CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCB
T ss_pred             hhh--------hchhhhcCcCcccEEEecCccch-hhhhhhccC---CccEEeeccCcccccCc-ccccccCEEeCcCCc
Confidence            221        11122777889999999999987 677766544   69999999999988776 578999999999998


Q ss_pred             CCCCCC-CCCCCccEEecCCCcCCCCc--hhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCCh-
Q 043523          307 LRGNIP-HMSTNTSYVDYSNNHFTFIP--ADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPA-  382 (650)
Q Consensus       307 l~~~~~-~~~~~L~~L~l~~~~i~~~~--~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-  382 (650)
                      +.+..+ ..+++|+++++++|+++...  ...+..+++|+.+++++|.+.+..+. +..+++|+.|++++|.+.+..+. 
T Consensus       337 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~  415 (570)
T 2z63_A          337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS  415 (570)
T ss_dssp             SCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC
T ss_pred             cccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh
Confidence            876544 56789999999999998653  33344589999999999999876655 89999999999999998865542 


Q ss_pred             hhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccc-cccchhcccCCCCCEEeCCCCccccccchhhhc
Q 043523          383 CLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQ-GVVPKSLANCNMLQVLDLKNNHISDNFPCWLGN  461 (650)
Q Consensus       383 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  461 (650)
                      .+..  .++|++|++++|.+.+..+ ..|..+++|++|++++|.+. +..|..+..+++|++|++++|++.+..|..+..
T Consensus       416 ~~~~--l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  492 (570)
T 2z63_A          416 VFLS--LRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS  492 (570)
T ss_dssp             TTTT--CTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             hhhc--CCCCCEEeCcCCcccccch-hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhc
Confidence            3333  3499999999999985544 44999999999999999997 468889999999999999999999988999999


Q ss_pred             CCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHH
Q 043523          462 ASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLL  511 (650)
Q Consensus       462 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  511 (650)
                      +++|++|++++|++++..  +..+..+++|++|++++|++.|.++..|+.
T Consensus       493 l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  540 (570)
T 2z63_A          493 LSSLQVLNMASNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  540 (570)
T ss_dssp             CTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             ccCCCEEeCCCCcCCCCC--HHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence            999999999999998664  567889999999999999999999876653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7.6e-43  Score=381.03  Aligned_cols=529  Identities=20%  Similarity=0.161  Sum_probs=339.9

Q ss_pred             CCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCc
Q 043523            8 GLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPP   87 (650)
Q Consensus         8 ~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~   87 (650)
                      +++ ..|..+.  +.+++|||++|+|+......|.++++|++|+|++|.+++..+++|.++++|++|+|++|+++...+.
T Consensus        42 ~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~  118 (635)
T 4g8a_A           42 NFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG  118 (635)
T ss_dssp             CCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred             CcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence            344 4454332  3789999999999888888999999999999999999877778899999999999999999977677


Q ss_pred             CccCCCCCcEEEccCCcccccCC-ccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCC
Q 043523           88 SMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPN  166 (650)
Q Consensus        88 ~l~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~  166 (650)
                      +|.++++|++|++++|+++.+++ .+..+++|++|++++|.++......++..+++|++|++++|.++...+..+..+++
T Consensus       119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~  198 (635)
T 4g8a_A          119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ  198 (635)
T ss_dssp             GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred             HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhh
Confidence            89999999999999999988776 47788999999999999875444444788999999999999998777776665444


Q ss_pred             C----CEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCC
Q 043523          167 L----ETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPI  242 (650)
Q Consensus       167 L----~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~  242 (650)
                      +    ..++++.|.+....+...  ....+..+++.++.....++...+..+..++...+..+........  .......
T Consensus       199 l~~~~~~~~ls~n~l~~i~~~~~--~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l--~~~~~~~  274 (635)
T 4g8a_A          199 MPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL--EKFDKSA  274 (635)
T ss_dssp             CTTCCCEEECTTCCCCEECTTTT--TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC--SCCCTTT
T ss_pred             hhhhhhhhhcccCcccccCcccc--cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc--ccccccc
Confidence            3    467888887764333222  2345677888887655445555567777777766644322211000  0011111


Q ss_pred             CCCCCCCcEEEccCCcCCCC---CChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCcc
Q 043523          243 LKNQSQLSGLDISNNQIPGE---IPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTS  319 (650)
Q Consensus       243 l~~~~~L~~L~l~~~~i~~~---~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~  319 (650)
                      +.....+....+..+.....   .+..+.  ...+++.+.+.++.+..+........++.+++.+|.+.......+..++
T Consensus       275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~  352 (635)
T 4g8a_A          275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFN--CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK  352 (635)
T ss_dssp             TGGGGGSEEEEEEEECCCSCEEECTTTTG--GGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCC
T ss_pred             cccccchhhhhhhhhhhcccccchhhhhh--hhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhh
Confidence            33344455444443332211   111111  1234777777777776666666666777777777766655555455555


Q ss_pred             EEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccC
Q 043523          320 YVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGR  399 (650)
Q Consensus       320 ~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  399 (650)
                      .+++..+.....                          .....+++|+.+++++|.+..............+|+++++..
T Consensus       353 ~l~l~~n~~~~~--------------------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~  406 (635)
T 4g8a_A          353 RLTFTSNKGGNA--------------------------FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSF  406 (635)
T ss_dssp             EEEEESCCSCCB--------------------------CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCS
T ss_pred             hcccccccCCCC--------------------------cccccccccccchhhccccccccccccchhhhhhhhhhhccc
Confidence            555554443322                          122345566666666665543221111222223777777777


Q ss_pred             ccCCCcCCCcccCCCCCccEEEcCCCcccccc-chhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCccccee
Q 043523          400 NNLNGTLSDTIFPRNCGLQILDLGGNQLQGVV-PKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGH  478 (650)
Q Consensus       400 ~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  478 (650)
                      +... ..+.. +..+++|+.+++.++...... ...+..+++++.+++++|.+....+..+..++.|++|++++|.+...
T Consensus       407 ~~~~-~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~  484 (635)
T 4g8a_A          407 NGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  484 (635)
T ss_dssp             CSEE-EECSC-CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             cccc-ccccc-ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccc
Confidence            7655 22322 677788888888887665443 35677788888888888888887777788888888888888875432


Q ss_pred             cCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccC
Q 043523          479 ISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKV  558 (650)
Q Consensus       479 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (650)
                      . .+..+..+++|++|++++|.++                                                        
T Consensus       485 ~-~~~~~~~l~~L~~L~Ls~N~L~--------------------------------------------------------  507 (635)
T 4g8a_A          485 F-LPDIFTELRNLTFLDLSQCQLE--------------------------------------------------------  507 (635)
T ss_dssp             E-ECSCCTTCTTCCEEECTTSCCC--------------------------------------------------------
T ss_pred             c-CchhhhhccccCEEECCCCccC--------------------------------------------------------
Confidence            1 1444555555555555555443                                                        


Q ss_pred             CCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCC-CCCCeE
Q 043523          559 PNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL-NFLSVL  637 (650)
Q Consensus       559 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L  637 (650)
                                     ++.+..|.++++|++|+|++|++++..+.+|+++++|++|++++|++++..|+.+..+ ++|+.|
T Consensus       508 ---------------~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L  572 (635)
T 4g8a_A          508 ---------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL  572 (635)
T ss_dssp             ---------------EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred             ---------------CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence                           3444455555555666666655555555555555566666666666655555555555 356666


Q ss_pred             EccCCcCc
Q 043523          638 NLSYNNLV  645 (650)
Q Consensus       638 ~l~~n~~~  645 (650)
                      ++++||+.
T Consensus       573 ~L~~Np~~  580 (635)
T 4g8a_A          573 NLTQNDFA  580 (635)
T ss_dssp             ECTTCCBC
T ss_pred             EeeCCCCc
Confidence            66655553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.6e-43  Score=370.75  Aligned_cols=463  Identities=19%  Similarity=0.170  Sum_probs=296.1

Q ss_pred             eecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCcc
Q 043523            2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNF   81 (650)
Q Consensus         2 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l   81 (650)
                      |++++|+++ ..|..+.  ++|++|++++|.++...+..|.++++|++|++++|.+++..|..|+++++|++|++++|++
T Consensus         5 l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l   81 (520)
T 2z7x_B            5 VDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL   81 (520)
T ss_dssp             EECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred             EecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence            455555555 3333333  5555555555555444334455555555555555555544455555555555555555555


Q ss_pred             ccCCCcCccCCCCCcEEEccCCccccc--CCccccCCCcCEEeCCCCcCcccCChHHHhccccC--CeEEccCCcC--CC
Q 043523           82 TGPIPPSMANLTQLFHMDFSSNHFSGH--IPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNL--NLVLLSHNSL--NG  155 (650)
Q Consensus        82 ~~~~~~~l~~l~~L~~L~l~~~~i~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L--~~L~l~~~~~--~~  155 (650)
                      + .+|..  .+++|++|++++|.+...  +..+..+++|++|++++|.+.+   .. +..+++|  +.|++++|.+  ..
T Consensus        82 ~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~-~~~l~~L~L~~L~l~~n~l~~~~  154 (520)
T 2z7x_B           82 V-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SS-VLPIAHLNISKVLLVLGETYGEK  154 (520)
T ss_dssp             C-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GG-GGGGTTSCEEEEEEEECTTTTSS
T ss_pred             e-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hh-ccccccceeeEEEeecccccccc
Confidence            5 23333  455555555555555431  2344455555555555555442   11 3444444  5555555544  33


Q ss_pred             CcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCc----ccccc
Q 043523          156 SIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNK----FSRLR  231 (650)
Q Consensus       156 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~----~~~~~  231 (650)
                      ..+..+..+..                        ....+++++|.+.+.++...+..+++|+.+++++|.    +..+.
T Consensus       155 ~~~~~l~~l~~------------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  210 (520)
T 2z7x_B          155 EDPEGLQDFNT------------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL  210 (520)
T ss_dssp             CCTTTTTTCCE------------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred             ccccccccccc------------------------ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceee
Confidence            33333332221                        122344555555444554444556666666666654    00000


Q ss_pred             ccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHh-hcCcccceeeecccccc-CCcCc------ccCCcccEEEec
Q 043523          232 LASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWE-VGNGNLNFLNLSHNLLV-SLQEP------YSISSIRLLDLH  303 (650)
Q Consensus       232 ~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~-~~~~~L~~L~l~~~~l~-~l~~~------~~l~~L~~L~l~  303 (650)
                            +.++.+..+++|++|+++++.+.+..+..+.. ...++|++|++++|.+. .++..      ..++.|+.++++
T Consensus       211 ------~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~  284 (520)
T 2z7x_B          211 ------SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVV  284 (520)
T ss_dssp             ------HHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEE
T ss_pred             ------cchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecccc
Confidence                  12223555667777777776655333222221 12236777888777776 45443      347788888888


Q ss_pred             cCcCCCCCCC-------CCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccc
Q 043523          304 SNQLRGNIPH-------MSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNL  376 (650)
Q Consensus       304 ~~~l~~~~~~-------~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  376 (650)
                      +|.+  ..+.       ...+++.+++++|++...+.  ...+++++++++++|.+.+..|..+..+++|+.|++++|.+
T Consensus       285 ~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  360 (520)
T 2z7x_B          285 SDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL  360 (520)
T ss_dssp             ECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCC
T ss_pred             ccce--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCcc
Confidence            8877  2221       01468888888888775542  13588999999999999998899999999999999999999


Q ss_pred             cc--cCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccc
Q 043523          377 SG--TIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDN  454 (650)
Q Consensus       377 ~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~  454 (650)
                      .+  .+|..+..  +++|++|++++|.+.+.++...|..+++|++|++++|++++..+..+.  ++|++|++++|++.. 
T Consensus       361 ~~l~~~~~~~~~--l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-  435 (520)
T 2z7x_B          361 KELSKIAEMTTQ--MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-  435 (520)
T ss_dssp             CBHHHHHHHHTT--CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-
T ss_pred             CccccchHHHhh--CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc-
Confidence            85  33444444  349999999999999768877799999999999999999877776654  799999999999996 


Q ss_pred             cchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHH-HhHHh
Q 043523          455 FPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWL-LTMEE  515 (650)
Q Consensus       455 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~l~~  515 (650)
                      +|..+..+++|++|++++|+++...  ...+..+++|++|++++|++.|.++..|+ .+|..
T Consensus       436 ip~~~~~l~~L~~L~L~~N~l~~l~--~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~  495 (520)
T 2z7x_B          436 IPKQVVKLEALQELNVASNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN  495 (520)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHH
T ss_pred             cchhhhcCCCCCEEECCCCcCCccC--HHHhccCCcccEEECcCCCCcccCCchHHHHHHHH
Confidence            6666779999999999999998543  23478899999999999999999998887 66543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1e-41  Score=364.59  Aligned_cols=472  Identities=17%  Similarity=0.158  Sum_probs=342.6

Q ss_pred             CeecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCc
Q 043523            1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN   80 (650)
Q Consensus         1 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~   80 (650)
                      +|++++|.+++..|.+|+++++|++|++++|+++...+..|.++++|++|++++|.+.+..+..|+++++|++|++++|.
T Consensus        30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  109 (549)
T 2z81_A           30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP  109 (549)
T ss_dssp             EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred             EEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence            48999999999999999999999999999999988777899999999999999999997767779999999999999999


Q ss_pred             ccc-CCCcCccCCCCCcEEEccCCc-ccccCC-ccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCc
Q 043523           81 FTG-PIPPSMANLTQLFHMDFSSNH-FSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSI  157 (650)
Q Consensus        81 l~~-~~~~~l~~l~~L~~L~l~~~~-i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  157 (650)
                      +++ ..|..++++++|++|++++|. +...++ .+..+++|++|++++|.+++..+.. +..+++|++|++++|.+....
T Consensus       110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~  188 (549)
T 2z81_A          110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSESAFLL  188 (549)
T ss_dssp             CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBSTTHH
T ss_pred             ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCcccccc
Confidence            986 356789999999999999998 555543 6888999999999999998766666 789999999999999987544


Q ss_pred             chhccCCCCCCEEEccCCcCCCCC--chhhhcCCCCccEEEccCCcCCCCCchhH---hhcCCCCcEEeCCCCccccccc
Q 043523          158 PRSLFLLPNLETLWLSNNQFENQL--PEISNVSSSVLFDLDLSGNRLEGPVPISI---IFELRNLYTLDLSSNKFSRLRL  232 (650)
Q Consensus       158 ~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~  232 (650)
                      ...+..+++|++|++++|.+....  +......++.|+.++++++.+.+..+..+   +..+++|+.+++++|.+..+..
T Consensus       189 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~  268 (549)
T 2z81_A          189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD  268 (549)
T ss_dssp             HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC
T ss_pred             hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc
Confidence            444467999999999999987532  12223347889999999998875444333   2567899999999998764321


Q ss_pred             cCCCCCCCCCCCCCCCCcEEEccCCcCCCC-----CChhHHhhcCcccceeeeccccccCCcCcc--cCCcccEEEeccC
Q 043523          233 ASSKPRVIPILKNQSQLSGLDISNNQIPGE-----IPNWIWEVGNGNLNFLNLSHNLLVSLQEPY--SISSIRLLDLHSN  305 (650)
Q Consensus       233 ~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~-----~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~--~l~~L~~L~l~~~  305 (650)
                      .  .......+..+++++.+++.++.+...     .+....  ..++++.|++++|.+..+|...  .+++|+.|++++|
T Consensus       269 ~--~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~--~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N  344 (549)
T 2z81_A          269 F--NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS--LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN  344 (549)
T ss_dssp             C--CCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH--HSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred             c--cccchhhhhhhcccccccccccccchhhhcccchhhhh--hcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence            1  112223367778899999998876531     111111  1245888888888887776554  3777888888777


Q ss_pred             cCCCCC------CCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCcccccc
Q 043523          306 QLRGNI------PHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGT  379 (650)
Q Consensus       306 ~l~~~~------~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  379 (650)
                      .+.+..      ...+++|++|++++|+++.++..                      +..+..+++|+.|++++|.+. .
T Consensus       345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------------------~~~~~~l~~L~~L~Ls~N~l~-~  401 (549)
T 2z81_A          345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT----------------------GEILLTLKNLTSLDISRNTFH-P  401 (549)
T ss_dssp             CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHH----------------------HHHGGGCTTCCEEECTTCCCC-C
T ss_pred             ccccccccchhhhhccccCcEEEccCCcccccccc----------------------hhhhhcCCCCCEEECCCCCCc-c
Confidence            776432      22344555555555555443320                      123445555555555555554 3


Q ss_pred             CChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhh
Q 043523          380 IPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWL  459 (650)
Q Consensus       380 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  459 (650)
                      +|..+...  ++|++|++++|.+. .++....   ++|++|++++|++++..    ..+++|++|+|++|+++. +|. .
T Consensus       402 lp~~~~~~--~~L~~L~Ls~N~l~-~l~~~~~---~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~-ip~-~  469 (549)
T 2z81_A          402 MPDSCQWP--EKMRFLNLSSTGIR-VVKTCIP---QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKT-LPD-A  469 (549)
T ss_dssp             CCSCCCCC--TTCCEEECTTSCCS-CCCTTSC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS-CCC-G
T ss_pred             CChhhccc--ccccEEECCCCCcc-cccchhc---CCceEEECCCCChhhhc----ccCChhcEEECCCCccCc-CCC-c
Confidence            44333222  26666666666655 3333211   46888888888777432    467888888888888886 443 4


Q ss_pred             hcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccC-hHHHHhHH
Q 043523          460 GNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLS-QKWLLTME  514 (650)
Q Consensus       460 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~l~  514 (650)
                      ..+++|++|++++|++++..  +..+..+++|++|++++|++.|.++ ..|+.+|.
T Consensus       470 ~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l  523 (549)
T 2z81_A          470 SLFPVLLVMKISRNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL  523 (549)
T ss_dssp             GGCTTCCEEECCSSCCCCCC--TTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred             ccCccCCEEecCCCccCCcC--HHHHhcCcccCEEEecCCCccCCCccHHHHHHHH
Confidence            56888888888888887554  5557788899999999999988887 45555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.4e-41  Score=369.12  Aligned_cols=492  Identities=21%  Similarity=0.167  Sum_probs=375.1

Q ss_pred             CeecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCc
Q 043523            1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN   80 (650)
Q Consensus         1 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~   80 (650)
                      +||+++|.|+++.+.+|.++++|++|+|++|+|+.....+|.++++|++|+|++|++++..+..|.++++|++|++++|+
T Consensus        56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~  135 (635)
T 4g8a_A           56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN  135 (635)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC
T ss_pred             EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc
Confidence            48999999998889999999999999999999988888899999999999999999996666789999999999999999


Q ss_pred             cccCCCcCccCCCCCcEEEccCCccccc--CCccccCCCcCEEeCCCCcCcccCChHHHhccccCC----eEEccCCcCC
Q 043523           81 FTGPIPPSMANLTQLFHMDFSSNHFSGH--IPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLN----LVLLSHNSLN  154 (650)
Q Consensus        81 l~~~~~~~l~~l~~L~~L~l~~~~i~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~----~L~l~~~~~~  154 (650)
                      +++..+.+|+++++|++|++++|.+...  +..+..+++|++|++++|.+++..+.. ++.+.+++    .++++.|.+.
T Consensus       136 l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l~~~~~~~~ls~n~l~  214 (635)
T 4g8a_A          136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMN  214 (635)
T ss_dssp             CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTCTTCCCEEECTTCCCC
T ss_pred             CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc-ccchhhhhhhhhhhhcccCccc
Confidence            9977777899999999999999998753  346678899999999999998555444 56665544    6888888887


Q ss_pred             CCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCc------CCCCCch--------------------
Q 043523          155 GSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNR------LEGPVPI--------------------  208 (650)
Q Consensus       155 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------l~~~~~~--------------------  208 (650)
                      ...+. ......++.+++.+|................++...+..+.      +. ....                    
T Consensus       215 ~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~-~~~~~~~~~~~~l~~~~l~~~~~~  292 (635)
T 4g8a_A          215 FIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE-KFDKSALEGLCNLTIEEFRLAYLD  292 (635)
T ss_dssp             EECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS-CCCTTTTGGGGGSEEEEEEEECCC
T ss_pred             ccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccc-cccccccccccchhhhhhhhhhhc
Confidence            44433 33344556677776644321112122223333333221111      11 1111                    


Q ss_pred             -------hHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeec
Q 043523          209 -------SIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLS  281 (650)
Q Consensus       209 -------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~  281 (650)
                             ..+....+++.+.+.++.+..          +..+.....++.|++.++.+....+.     ....++.+.+.
T Consensus       293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~----------~~~~~~~~~L~~L~l~~~~~~~~~~~-----~l~~L~~l~l~  357 (635)
T 4g8a_A          293 YYLDGIIDLFNCLTNVSSFSLVSVTIER----------VKDFSYNFGWQHLELVNCKFGQFPTL-----KLKSLKRLTFT  357 (635)
T ss_dssp             SCEEECTTTTGGGTTCSEEEEESCEEEE----------CGGGGSCCCCSEEEEESCEESSCCCC-----BCTTCCEEEEE
T ss_pred             ccccchhhhhhhhccccccccccccccc----------ccccccchhhhhhhcccccccCcCcc-----cchhhhhcccc
Confidence                   112333445555555444332          12244556788888888877643332     22458888888


Q ss_pred             cccccCCcCcccCCcccEEEeccCcCCCCCC-----CCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccc
Q 043523          282 HNLLVSLQEPYSISSIRLLDLHSNQLRGNIP-----HMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVI  356 (650)
Q Consensus       282 ~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~-----~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~  356 (650)
                      .+..........+++++.+++++|.+.....     ....+++++++..+.+...+..+. .++.++.+++..+......
T Consensus       358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~  436 (635)
T 4g8a_A          358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMS  436 (635)
T ss_dssp             SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCT-TCTTCCEEECTTSEEESTT
T ss_pred             cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccc-ccccccchhhhhccccccc
Confidence            8877777766778899999999887753211     234678888888888775555444 4889999999988776655


Q ss_pred             c-ccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhc
Q 043523          357 P-ESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSL  435 (650)
Q Consensus       357 ~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~  435 (650)
                      + ..+..+.+++.++++.|.+....+..+....  .++.|++++|.+.+.+....|..+++|++|++++|++++..|.+|
T Consensus       437 ~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~--~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f  514 (635)
T 4g8a_A          437 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS--SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF  514 (635)
T ss_dssp             SSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT--TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             cccccccccccccccccccccccccccccccch--hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHH
Confidence            4 4567889999999999999877666655544  999999999987656666669999999999999999998889999


Q ss_pred             ccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCC-CCCCeeeCCCcccccccChHHHHhHH
Q 043523          436 ANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSW-PLLQIVDLASNKFSGRLSQKWLLTME  514 (650)
Q Consensus       436 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~  514 (650)
                      .++++|++|+|++|++..+.+..|.++++|++|++++|++++..  +..+..+ ++|++|++++|++.|.|...|+.+|.
T Consensus       515 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl  592 (635)
T 4g8a_A          515 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK--KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI  592 (635)
T ss_dssp             TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCC--SSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred             cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCC--HHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence            99999999999999999988999999999999999999998775  6677777 68999999999999999999988775


Q ss_pred             h
Q 043523          515 E  515 (650)
Q Consensus       515 ~  515 (650)
                      +
T Consensus       593 ~  593 (635)
T 4g8a_A          593 K  593 (635)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5e-41  Score=358.99  Aligned_cols=400  Identities=17%  Similarity=0.154  Sum_probs=246.5

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEE
Q 043523           19 QVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHM   98 (650)
Q Consensus        19 ~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L   98 (650)
                      .+...++++++++.++.+. ..+.  ++|++|++++|.+.+..+..|.++++|++|++++|++++..|.+|.++++|++|
T Consensus        29 ~~~~~~~l~ls~~~L~~ip-~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           29 SNELESMVDYSNRNLTHVP-KDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             ----CCEEECTTSCCCSCC-TTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             ccCCCcEEEcCCCCCccCC-CCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            3445588999999886543 3333  789999999999887667789999999999999999988888889999999999


Q ss_pred             EccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCC--CEEEccCCc
Q 043523           99 DFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNL--ETLWLSNNQ  176 (650)
Q Consensus        99 ~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~  176 (650)
                      ++++|+++.+++.  .+++|++|++++|.+++......++++++|++|++++|.+...   .+..++++  +.|++++|.
T Consensus       106 ~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          106 DVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             ECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred             ECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence            9999998866655  7889999999999887532223378888888888888888753   33444444  888888877


Q ss_pred             C--CCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEc
Q 043523          177 F--ENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDI  254 (650)
Q Consensus       177 ~--~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l  254 (650)
                      +  ....+.....-....-.+++++|.+.+.++...+..+++|+.+++++|........    ..++.+...++++.+++
T Consensus       181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~----~~~~~l~~l~~L~~L~L  256 (562)
T 3a79_B          181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM----TFLSELTRGPTLLNVTL  256 (562)
T ss_dssp             CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHH----HHHHHHHSCSSCEEEEE
T ss_pred             ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHH----HHHHHHhccCcceEEEe
Confidence            6  43222211110001113455555544444433333444444444444321000000    00000122222222222


Q ss_pred             cCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchh
Q 043523          255 SNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPAD  334 (650)
Q Consensus       255 ~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~  334 (650)
                      +++.+.                                                                ++.+..++..
T Consensus       257 ~~~~l~----------------------------------------------------------------~~~~~~~~~~  272 (562)
T 3a79_B          257 QHIETT----------------------------------------------------------------WKCSVKLFQF  272 (562)
T ss_dssp             EEEEEC----------------------------------------------------------------HHHHHHHHHH
T ss_pred             cCCcCc----------------------------------------------------------------HHHHHHHHHh
Confidence            222211                                                                1111111111


Q ss_pred             hhhccCCccEEEccCCcccccccccc-----cCCCcccEEECcCccccccCChhhhhc--cccCccEEEccCccCCCcCC
Q 043523          335 IGNFMSETEYFFAANNSLVGVIPESV-----CKGIYFQVLDLSNNNLSGTIPACLIAQ--SETTLGVLNLGRNNLNGTLS  407 (650)
Q Consensus       335 ~~~~~~~l~~l~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~  407 (650)
                      .  ..++++++++++|.+.+.+|..+     ..++.|+.+++..+.+  .+|......  ...+|++|++++|.+.... 
T Consensus       273 ~--~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~-  347 (562)
T 3a79_B          273 F--WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV-  347 (562)
T ss_dssp             H--TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC-
T ss_pred             h--hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc-
Confidence            1  12244444455554444444444     4455555556655555  334221111  1126899999999875221 


Q ss_pred             CcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCcccccc--chhhhcCCCCCeEEccCcccceecCCCCCC
Q 043523          408 DTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNF--PCWLGNASSLQVLVLQSNNFSGHISCPRNN  485 (650)
Q Consensus       408 ~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  485 (650)
                        ....+++|++|++++|.+++..|..+..+++|++|++++|++.++.  +..+..+++|++|++++|++++... ...+
T Consensus       348 --~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~  424 (562)
T 3a79_B          348 --CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY-DRTC  424 (562)
T ss_dssp             --CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS-SCCC
T ss_pred             --CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC-hhhh
Confidence              1367888999999999999878888999999999999999998733  4667889999999999999875221 3346


Q ss_pred             CCCCCCCeeeCCCcccc
Q 043523          486 VSWPLLQIVDLASNKFS  502 (650)
Q Consensus       486 ~~~~~L~~L~l~~n~~~  502 (650)
                      ..+++|++|++++|.++
T Consensus       425 ~~l~~L~~L~l~~n~l~  441 (562)
T 3a79_B          425 AWAESILVLNLSSNMLT  441 (562)
T ss_dssp             CCCTTCCEEECCSSCCC
T ss_pred             cCcccCCEEECCCCCCC
Confidence            66788888888888764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.5e-41  Score=358.57  Aligned_cols=436  Identities=21%  Similarity=0.237  Sum_probs=307.0

Q ss_pred             CeecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCc
Q 043523            1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN   80 (650)
Q Consensus         1 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~   80 (650)
                      +|++++|.+++..|.+|.++++|++|++++|+++...+..|.++++|++|+|++|.++ .+|..  .+++|++|++++|.
T Consensus        25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~  101 (520)
T 2z7x_B           25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNA  101 (520)
T ss_dssp             EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSC
T ss_pred             EEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCc
Confidence            4899999999888899999999999999999998777789999999999999999998 56665  89999999999999


Q ss_pred             ccc-CCCcCccCCCCCcEEEccCCcccccCCccccCCCc--CEEeCCCCcC--cccCChHHHhccc-cCCeEEccCCcCC
Q 043523           81 FTG-PIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNL--KYLDLSFNNL--SGGISSTFWEQLV-NLNLVLLSHNSLN  154 (650)
Q Consensus        81 l~~-~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L--~~L~l~~~~l--~~~~~~~~~~~l~-~L~~L~l~~~~~~  154 (650)
                      +++ ..|..|+++++|++|++++|.+..  ..+..+++|  ++|++++|.+  .+..+.. +..+. +...+++++|.+.
T Consensus       102 l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~l~~~~l~l~l~~n~~~  178 (520)
T 2z7x_B          102 FDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDFNTESLHIVFPTNKEF  178 (520)
T ss_dssp             CSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TTTCCEEEEEEECCSSSCC
T ss_pred             cccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-ccccccceEEEEeccCcch
Confidence            996 468899999999999999999875  456677888  9999999998  5555544 45444 3346677888766


Q ss_pred             CCcc-hhccCCCCCCEEEccCCc-------CCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhh--cCCCCcEEeCCC
Q 043523          155 GSIP-RSLFLLPNLETLWLSNNQ-------FENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIF--ELRNLYTLDLSS  224 (650)
Q Consensus       155 ~~~~-~~l~~l~~L~~L~l~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~--~l~~L~~L~l~~  224 (650)
                      ...+ ..+..+++|+.+++++|.       +.+.++  ....+++|+.++++++.+.+..+..+..  ..++|+.|++++
T Consensus       179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~  256 (520)
T 2z7x_B          179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN  256 (520)
T ss_dssp             CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred             hhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec
Confidence            5433 456778999999999886       222222  2234678899999888776433332221  246888999988


Q ss_pred             Cccc-cccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCC-hhHHhh-cCcccceeeeccccccCCcCcccCCcccEEE
Q 043523          225 NKFS-RLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIP-NWIWEV-GNGNLNFLNLSHNLLVSLQEPYSISSIRLLD  301 (650)
Q Consensus       225 ~~~~-~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~-~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~  301 (650)
                      |.+. .++...+.    .....+++|+.++++++.+  .+| .++... ...+++.|++++|.+...+....+++|++|+
T Consensus       257 n~l~~~~p~~~~~----~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  330 (520)
T 2z7x_B          257 VKLQGQLDFRDFD----YSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD  330 (520)
T ss_dssp             EEEESCCCCCCCC----CCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred             ccccCccccchhh----cccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEE
Confidence            8776 22111000    0016778888888888887  455 455443 2345777888777776655434566666666


Q ss_pred             eccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccc--cccccccCCCcccEEECcCcccccc
Q 043523          302 LHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVG--VIPESVCKGIYFQVLDLSNNNLSGT  379 (650)
Q Consensus       302 l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~  379 (650)
                      +++|.+.+..+.                    . +..+++|+.+++++|.+.+  ..|..+..+++|+.|++++|.+.+.
T Consensus       331 Ls~n~l~~~~~~--------------------~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~  389 (520)
T 2z7x_B          331 FSNNLLTDTVFE--------------------N-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD  389 (520)
T ss_dssp             CCSSCCCTTTTT--------------------T-CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred             eECCccChhhhh--------------------h-hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence            666666553332                    1 1235566666666666654  3445566677777777777776654


Q ss_pred             CChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhh
Q 043523          380 IPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWL  459 (650)
Q Consensus       380 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  459 (650)
                      +|..... ..++|++|++++|.+++..+.. +.  ++|++|++++|+++ .+|..+..+++|++|++++|+++.+.+..+
T Consensus       390 l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~-l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~  464 (520)
T 2z7x_B          390 EKKGDCS-WTKSLLSLNMSSNILTDTIFRC-LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIF  464 (520)
T ss_dssp             GGGCSCC-CCTTCCEEECCSSCCCGGGGGS-CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cccchhc-cCccCCEEECcCCCCCcchhhh-hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHh
Confidence            4443111 1237777777777776554443 22  57888888888887 566666688888888888888887444457


Q ss_pred             hcCCCCCeEEccCcccc
Q 043523          460 GNASSLQVLVLQSNNFS  476 (650)
Q Consensus       460 ~~~~~L~~L~l~~n~~~  476 (650)
                      ..+++|++|++++|++.
T Consensus       465 ~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          465 DRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             TTCTTCCEEECCSSCBC
T ss_pred             ccCCcccEEECcCCCCc
Confidence            77888888888888775

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.1e-41  Score=360.75  Aligned_cols=333  Identities=19%  Similarity=0.265  Sum_probs=177.5

Q ss_pred             CchhHhh--cCCCCcEEeCCCCccccccccCCCCCCCCC-CCCCCCCcEEEccCCc-CCC-CCChhHHhhcCcccceeee
Q 043523          206 VPISIIF--ELRNLYTLDLSSNKFSRLRLASSKPRVIPI-LKNQSQLSGLDISNNQ-IPG-EIPNWIWEVGNGNLNFLNL  280 (650)
Q Consensus       206 ~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-l~~~~~L~~L~l~~~~-i~~-~~~~~~~~~~~~~L~~L~l  280 (650)
                      +|..+ .  ++++|+.|++++|.+.         +.+|. +..+++|++|++++|. +.+ .+|..+.....        
T Consensus       239 ip~~l-~~~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~--------  300 (636)
T 4eco_A          239 KTEDL-KWDNLKDLTDVEVYNCPNL---------TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD--------  300 (636)
T ss_dssp             TTSCC-CGGGCTTCCEEEEECCTTC---------SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHH--------
T ss_pred             Cchhh-hhcccCCCCEEEecCCcCC---------ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhc--------
Confidence            55544 4  7777888888777665         33333 6777788888888887 765 56666654310        


Q ss_pred             ccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCch-hhhhccCCccEEEccCCccccccccc
Q 043523          281 SHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPA-DIGNFMSETEYFFAANNSLVGVIPES  359 (650)
Q Consensus       281 ~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~  359 (650)
                                ...+++|+.|++++|                     +++.+|. ..+..+++|+.+++++|.+.+.+| .
T Consensus       301 ----------~~~l~~L~~L~L~~n---------------------~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~  348 (636)
T 4eco_A          301 ----------APVGEKIQIIYIGYN---------------------NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A  348 (636)
T ss_dssp             ----------SGGGGTCCEEECCSS---------------------CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred             ----------cccCCCCCEEECCCC---------------------cCCccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence                      001122333333333                     3333333 112224555555555555555555 5


Q ss_pred             ccCCCcccEEECcCccccccCChhhhhccccC-ccEEEccCccCCCcCCCcccCCC--CCccEEEcCCCccccccchhcc
Q 043523          360 VCKGIYFQVLDLSNNNLSGTIPACLIAQSETT-LGVLNLGRNNLNGTLSDTIFPRN--CGLQILDLGGNQLQGVVPKSLA  436 (650)
Q Consensus       360 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~ls~~~i~~~~~~~~~  436 (650)
                      +..+++|+.|++++|.+. .+|..+....  + |++|++++|.+. .++.. +..+  ++|++|++++|.+.+..|..+.
T Consensus       349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~--~~L~~L~Ls~N~l~-~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  423 (636)
T 4eco_A          349 FGSEIKLASLNLAYNQIT-EIPANFCGFT--EQVENLSFAHNKLK-YIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFD  423 (636)
T ss_dssp             CEEEEEESEEECCSSEEE-ECCTTSEEEC--TTCCEEECCSSCCS-SCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred             hCCCCCCCEEECCCCccc-cccHhhhhhc--ccCcEEEccCCcCc-ccchh-hhhcccCccCEEECcCCcCCCcchhhhc
Confidence            555555566666655555 4444433332  4 666666666555 44432 3332  2566666666666555555555


Q ss_pred             -------cCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCC-------CCCCCCeeeCCCcccc
Q 043523          437 -------NCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNV-------SWPLLQIVDLASNKFS  502 (650)
Q Consensus       437 -------~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-------~~~~L~~L~l~~n~~~  502 (650)
                             .+++|++|++++|++..+.+..+..+++|++|++++|+++...  ...+.       ++++|++|++++|.++
T Consensus       424 ~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  501 (636)
T 4eco_A          424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP--KNSLKDENENFKNTYLLTSIDLRFNKLT  501 (636)
T ss_dssp             TTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCC--SSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred             ccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcC--HHHhccccccccccCCccEEECcCCcCC
Confidence                   5556666666666666543344444666666666666655221  11111       1225666666666554


Q ss_pred             cccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccC
Q 043523          503 GRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGR  582 (650)
Q Consensus       503 ~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~  582 (650)
                       .++..+                                             ....++.|+.|++++|.+.+ .+..+..
T Consensus       502 -~lp~~~---------------------------------------------~~~~l~~L~~L~Ls~N~l~~-ip~~~~~  534 (636)
T 4eco_A          502 -KLSDDF---------------------------------------------RATTLPYLVGIDLSYNSFSK-FPTQPLN  534 (636)
T ss_dssp             -BCCGGG---------------------------------------------STTTCTTCCEEECCSSCCSS-CCCGGGG
T ss_pred             -ccChhh---------------------------------------------hhccCCCcCEEECCCCCCCC-cChhhhc
Confidence             222111                                             00135556666666666665 4455556


Q ss_pred             CcCCCEEeC------ccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCc
Q 043523          583 FKSLYALNM------SHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV  645 (650)
Q Consensus       583 l~~L~~L~l------s~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  645 (650)
                      +++|++|++      ++|++.+..|.+++.+++|++|++++|+++ .+|..+.  ++|+.|++++|++.
T Consensus       535 l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred             CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence            666666666      345555566666666666666666666664 3333333  56666666666554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=7.5e-40  Score=349.91  Aligned_cols=471  Identities=20%  Similarity=0.182  Sum_probs=350.0

Q ss_pred             CeecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCc
Q 043523            1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN   80 (650)
Q Consensus         1 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~   80 (650)
                      ++++++++++. .|..+.  ++|++|++++|.++...+..|.++++|++|++++|.+++..|..|.++++|++|++++|+
T Consensus        35 ~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  111 (562)
T 3a79_B           35 MVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR  111 (562)
T ss_dssp             EEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence            37899999995 665553  899999999999987777799999999999999999998889999999999999999999


Q ss_pred             cccCCCcCccCCCCCcEEEccCCcccccC--CccccCCCcCEEeCCCCcCcccCChHHHhccccC--CeEEccCCcC--C
Q 043523           81 FTGPIPPSMANLTQLFHMDFSSNHFSGHI--PSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNL--NLVLLSHNSL--N  154 (650)
Q Consensus        81 l~~~~~~~l~~l~~L~~L~l~~~~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L--~~L~l~~~~~--~  154 (650)
                      ++ .+|..  .+++|++|++++|++...+  ..+..+++|++|++++|.+...   . +..+++|  ++|++++|.+  .
T Consensus       112 l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~-~~~l~~L~L~~L~L~~n~l~~~  184 (562)
T 3a79_B          112 LQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---D-LLPVAHLHLSCILLDLVSYHIK  184 (562)
T ss_dssp             CC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---T-TGGGTTSCEEEEEEEESSCCCC
T ss_pred             CC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---c-hhhhhhceeeEEEeeccccccc
Confidence            99 56655  8999999999999998754  5788999999999999998742   2 5566666  9999999998  7


Q ss_pred             CCcchhccCCC-CCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCC-CCc--hhHhhcCCCCcEEeCCCCccccc
Q 043523          155 GSIPRSLFLLP-NLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEG-PVP--ISIIFELRNLYTLDLSSNKFSRL  230 (650)
Q Consensus       155 ~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~--~~~~~~l~~L~~L~l~~~~~~~~  230 (650)
                      ...+..+..+. ..-.+++++|.+....+......+++|+.+++++|.... .++  ...+..+++|+.++++++.+...
T Consensus       185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~  264 (562)
T 3a79_B          185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK  264 (562)
T ss_dssp             SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred             ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence            67777777654 122567788887766666666678889999999885210 011  12347788999999888766532


Q ss_pred             cccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCC--cCcc-----cCCcccEEEec
Q 043523          231 RLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSL--QEPY-----SISSIRLLDLH  303 (650)
Q Consensus       231 ~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l--~~~~-----~l~~L~~L~l~  303 (650)
                      ....     ++.....++|++|++++|.+.+.+|.+++.....+++.|.+.++....+  +...     ..++++.++++
T Consensus       265 ~~~~-----~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~  339 (562)
T 3a79_B          265 CSVK-----LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS  339 (562)
T ss_dssp             HHHH-----HHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred             HHHH-----HHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence            2110     0011123478888888888877777665433223455544444333222  1000     01334455554


Q ss_pred             cCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChh
Q 043523          304 SNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPAC  383 (650)
Q Consensus       304 ~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  383 (650)
                      +|                     ++.....  ...+++++.+++++|.+.+..|..+..+++|+.|++++|.+.+..+..
T Consensus       340 ~n---------------------~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  396 (562)
T 3a79_B          340 DT---------------------PFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA  396 (562)
T ss_dssp             SS---------------------CCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHH
T ss_pred             CC---------------------CcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccch
Confidence            44                     4432221  124678888888888888888888889999999999999887422211


Q ss_pred             hhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCC
Q 043523          384 LIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNAS  463 (650)
Q Consensus       384 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  463 (650)
                      ......++|++|++++|.+.+.++...|..+++|++|++++|++++..+..+.  ++|++|++++|+++. +|..+..++
T Consensus       397 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~  473 (562)
T 3a79_B          397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQ  473 (562)
T ss_dssp             HTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSC
T ss_pred             hhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCC
Confidence            12233459999999999999768888899999999999999999876665543  799999999999997 555556999


Q ss_pred             CCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHh-HH
Q 043523          464 SLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLT-ME  514 (650)
Q Consensus       464 ~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-l~  514 (650)
                      +|++|++++|++++..  ...+..+++|+.|++++|++.|.++..|+.+ |.
T Consensus       474 ~L~~L~L~~N~l~~l~--~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~  523 (562)
T 3a79_B          474 ALQELNVASNQLKSVP--DGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI  523 (562)
T ss_dssp             CCSEEECCSSCCCCCC--TTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHH
T ss_pred             CCCEEECCCCCCCCCC--HHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHH
Confidence            9999999999998543  2248889999999999999999999888744 53

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5e-40  Score=359.29  Aligned_cols=429  Identities=21%  Similarity=0.245  Sum_probs=261.4

Q ss_pred             eecCCCCCcccccccccCCCCCCEEeC-CCCCCCCCCCC-----------------------------------------
Q 043523            2 LDLSECGLQGKFPEKILQVPTLETLDL-SENQLLQGSLP-----------------------------------------   39 (650)
Q Consensus         2 L~l~~~~i~~~~~~~~~~~~~L~~L~l-s~~~i~~~~~~-----------------------------------------   39 (650)
                      |+|+++++.|.+|.+++++++|++|+| ++|.+....+.                                         
T Consensus       328 L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~  407 (876)
T 4ecn_A          328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA  407 (876)
T ss_dssp             EECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred             EECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence            788888888888888889999999999 67654222000                                         


Q ss_pred             --------CC--CCCCcccEEEccC--CcCcCCCCCCCCCCCCCcEEEcCCCcccc-----------------CCCcCcc
Q 043523           40 --------NF--PKNSSLRNLILSG--TGFSGTLPDSIGNLENLTWVEVRRCNFTG-----------------PIPPSMA   90 (650)
Q Consensus        40 --------~~--~~l~~L~~L~L~~--~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----------------~~~~~l~   90 (650)
                              .+  .....++.+.+..  |.+++ +|..++++++|++|+|++|.+++                 .+|..++
T Consensus       408 l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~  486 (876)
T 4ecn_A          408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS  486 (876)
T ss_dssp             HHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred             hhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh
Confidence                    00  1112233333333  55554 67778888888888888888876                 2677766


Q ss_pred             --CCCCCcEEEccCCccccc-CCccccCCCcCEEeCCCCc-Ccc-cCChHHHhccc-------cCCeEEccCCcCCCCcc
Q 043523           91 --NLTQLFHMDFSSNHFSGH-IPSLHKSRNLKYLDLSFNN-LSG-GISSTFWEQLV-------NLNLVLLSHNSLNGSIP  158 (650)
Q Consensus        91 --~l~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~-l~~-~~~~~~~~~l~-------~L~~L~l~~~~~~~~~~  158 (650)
                        ++++|++|++++|.+.+. ++.+..+++|++|++++|. +++ .++.. +..++       +|+.|++++|.+. ..|
T Consensus       487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip  564 (876)
T 4ecn_A          487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLE-EFP  564 (876)
T ss_dssp             GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCC-BCC
T ss_pred             hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCC-ccC
Confidence              888888888888776544 3467777888888888887 665 45554 45554       7888888888777 556


Q ss_pred             h--hccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCC-CcEEeCCCCccccccccCC
Q 043523          159 R--SLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRN-LYTLDLSSNKFSRLRLASS  235 (650)
Q Consensus       159 ~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~  235 (650)
                      .  .+..+++|+.|++++|.+. .++  ....+++|+.|++++|.+. .+|..+ ..+++ |+.|++++|.+..++.   
T Consensus       565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l-~~l~~~L~~L~Ls~N~L~~lp~---  636 (876)
T 4ecn_A          565 ASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDF-CAFTDQVEGLGFSHNKLKYIPN---  636 (876)
T ss_dssp             CHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTS-CEECTTCCEEECCSSCCCSCCS---
T ss_pred             ChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHH-hhccccCCEEECcCCCCCcCch---
Confidence            6  7777888888888887776 444  3344677777777777777 666554 66676 7777777777653321   


Q ss_pred             CCCCCCCCCCC--CCCcEEEccCCcCCCCCChhH---HhhcCcccceeeeccccccCCcCcc--cCCcccEEEeccCcCC
Q 043523          236 KPRVIPILKNQ--SQLSGLDISNNQIPGEIPNWI---WEVGNGNLNFLNLSHNLLVSLQEPY--SISSIRLLDLHSNQLR  308 (650)
Q Consensus       236 ~~~~l~~l~~~--~~L~~L~l~~~~i~~~~~~~~---~~~~~~~L~~L~l~~~~l~~l~~~~--~l~~L~~L~l~~~~l~  308 (650)
                            .+...  ++|+.|++++|.+.+.+|...   .....++|+.|++++|.+..++...  .+++|+.|++++|.+ 
T Consensus       637 ------~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L-  709 (876)
T 4ecn_A          637 ------IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM-  709 (876)
T ss_dssp             ------CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC-
T ss_pred             ------hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC-
Confidence                  12222  347777777777765444221   1112234555666666555544332  245555555555544 


Q ss_pred             CCCCCCCCCccEEecCCCcCCCCchhhhhcc-------CCccEEEccCCccccccccccc--CCCcccEEECcCcccccc
Q 043523          309 GNIPHMSTNTSYVDYSNNHFTFIPADIGNFM-------SETEYFFAANNSLVGVIPESVC--KGIYFQVLDLSNNNLSGT  379 (650)
Q Consensus       309 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~-------~~l~~l~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~  379 (650)
                                          +.+|...+...       ++|+.|++++|.+. .+|..+.  .+++|+.|++++|.+.+ 
T Consensus       710 --------------------~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-  767 (876)
T 4ecn_A          710 --------------------TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-  767 (876)
T ss_dssp             --------------------SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred             --------------------CccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-
Confidence                                44444433322       25666666666555 4455554  56666666666666654 


Q ss_pred             CChhhhhccccCccEEEccC------ccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCcccc
Q 043523          380 IPACLIAQSETTLGVLNLGR------NNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD  453 (650)
Q Consensus       380 ~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~  453 (650)
                      +|..+...  ++|+.|++++      |.+.+.+|.. |..+++|++|++++|++. .+|..+.  ++|+.|+|++|++..
T Consensus       768 lp~~l~~L--~~L~~L~Ls~N~~ls~N~l~~~ip~~-l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          768 FPTQPLNS--SQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             CCCGGGGC--TTCCEEECCCCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCE
T ss_pred             cchhhhcC--CCCCEEECCCCCCcccccccccChHH-HhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCc
Confidence            44444332  2566666654      5555455544 566667777777777663 5555443  467777777777666


Q ss_pred             ccchhhhcCCCCCeEEccCcccc
Q 043523          454 NFPCWLGNASSLQVLVLQSNNFS  476 (650)
Q Consensus       454 ~~~~~~~~~~~L~~L~l~~n~~~  476 (650)
                      +.+..+.....+..+.+.+|+..
T Consensus       842 i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          842 IDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             EECGGGHHHHHTTCCEEECCTTS
T ss_pred             cChHHccccccchheeecCCCcc
Confidence            55555555445555555555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.1e-41  Score=362.33  Aligned_cols=183  Identities=20%  Similarity=0.189  Sum_probs=112.4

Q ss_pred             cccEEEeccCcCCCCCCCCC----------CCccEEecCCCcCCCCchhhhhccCCccEEEccCCccccccccccc-CCC
Q 043523          296 SIRLLDLHSNQLRGNIPHMS----------TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVC-KGI  364 (650)
Q Consensus       296 ~L~~L~l~~~~l~~~~~~~~----------~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~-~~~  364 (650)
                      +|+.+++++|.+.+..+..+          .+|++|++++|+++.++..++..+++|+.+++++|.+. .+|.... ...
T Consensus       403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~  481 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN  481 (636)
T ss_dssp             CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT
T ss_pred             ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc
Confidence            55666666666555443322          35666666666666666666655666666666666655 2332221 111


Q ss_pred             cccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCccc-CCCCCccEEEcCCCccccccchhcccCCCCCE
Q 043523          365 YFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIF-PRNCGLQILDLGGNQLQGVVPKSLANCNMLQV  443 (650)
Q Consensus       365 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~  443 (650)
                                       ..  ...+++|++|++++|.+. .++...+ ..+++|++|++++|++++ +|..+..+++|++
T Consensus       482 -----------------~~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~  540 (636)
T 4eco_A          482 -----------------EN--FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG  540 (636)
T ss_dssp             -----------------EE--CTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCE
T ss_pred             -----------------cc--ccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCE
Confidence                             00  000115666666666666 4554433 367777777777777775 6667777777777


Q ss_pred             EeC------CCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCccccccc
Q 043523          444 LDL------KNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRL  505 (650)
Q Consensus       444 L~L------s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  505 (650)
                      |+|      ++|++.+..|..+..+++|++|++++|++...   +..+.  ++|++|++++|++.+..
T Consensus       541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i---p~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV---NEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC---CSCCC--TTCCEEECCSCTTCEEE
T ss_pred             EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCcc---CHhHh--CcCCEEECcCCCCcccc
Confidence            777      45666667777788888888888888888432   33333  78888888888776544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.6e-39  Score=352.55  Aligned_cols=411  Identities=21%  Similarity=0.271  Sum_probs=272.1

Q ss_pred             CcccEEEccCCcCcCCCCCCCCCCCCCcEEEc-CCCccccCCCcC-----------------------------------
Q 043523           45 SSLRNLILSGTGFSGTLPDSIGNLENLTWVEV-RRCNFTGPIPPS-----------------------------------   88 (650)
Q Consensus        45 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L-~~~~l~~~~~~~-----------------------------------   88 (650)
                      .+++.|+|+++++.+.+|..++++++|++|+| ++|.+.+..|..                                   
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            46777777777777777777777777777777 666554331111                                   


Q ss_pred             ----------------ccCCCCCcEEEcc--CCcccccCCccccCCCcCEEeCCCCcCcc-----------------cCC
Q 043523           89 ----------------MANLTQLFHMDFS--SNHFSGHIPSLHKSRNLKYLDLSFNNLSG-----------------GIS  133 (650)
Q Consensus        89 ----------------l~~l~~L~~L~l~--~~~i~~~~~~~~~~~~L~~L~l~~~~l~~-----------------~~~  133 (650)
                                      ......++.+.+.  .|.++++++.+..+++|++|++++|.+++                 .++
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP  482 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN  482 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence                            0111223333333  36676677778888899999999998886                 266


Q ss_pred             hHH-HhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCc-CCC-CCchh------hhcCCCCccEEEccCCcCCC
Q 043523          134 STF-WEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQ-FEN-QLPEI------SNVSSSVLFDLDLSGNRLEG  204 (650)
Q Consensus       134 ~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~------~~~~~~~L~~L~l~~~~l~~  204 (650)
                      ..+ |.++++|+.|++++|.+....|..+..+++|+.|++++|. +.. .+|..      ....+++|+.|++++|.+. 
T Consensus       483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-  561 (876)
T 4ecn_A          483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-  561 (876)
T ss_dssp             SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred             hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-
Confidence            652 3389999999999998888888899999999999999997 664 34432      1234568999999999998 


Q ss_pred             CCch-hHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcc-cceeeecc
Q 043523          205 PVPI-SIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGN-LNFLNLSH  282 (650)
Q Consensus       205 ~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~-L~~L~l~~  282 (650)
                      .+|. ..+..+++|+.|++++|.+..++          .+..+++|++|++++|.+. .+|.++...  ++ |+.|++++
T Consensus       562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp----------~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l--~~~L~~L~Ls~  628 (876)
T 4ecn_A          562 EFPASASLQKMVKLGLLDCVHNKVRHLE----------AFGTNVKLTDLKLDYNQIE-EIPEDFCAF--TDQVEGLGFSH  628 (876)
T ss_dssp             BCCCHHHHTTCTTCCEEECTTSCCCBCC----------CCCTTSEESEEECCSSCCS-CCCTTSCEE--CTTCCEEECCS
T ss_pred             ccCChhhhhcCCCCCEEECCCCCcccch----------hhcCCCcceEEECcCCccc-cchHHHhhc--cccCCEEECcC
Confidence            7886 34489999999999999886332          3778899999999999998 788775443  45 99999999


Q ss_pred             ccccCCcCccc---CCcccEEEeccCcCCCCCCCC--------CCCccEEecCCCcCCCCchhhhhccCCccEEEccCCc
Q 043523          283 NLLVSLQEPYS---ISSIRLLDLHSNQLRGNIPHM--------STNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNS  351 (650)
Q Consensus       283 ~~l~~l~~~~~---l~~L~~L~l~~~~l~~~~~~~--------~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~  351 (650)
                      |.+..+|....   .++|+.|++++|.+.+..+..        .++|+.|++++|+++.+|..++..+++|+.|++++|.
T Consensus       629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~  708 (876)
T 4ecn_A          629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL  708 (876)
T ss_dssp             SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred             CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence            99988876654   245999999999988755432        2478888888888888888777667788888888877


Q ss_pred             ccccccccccCC--------CcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcC
Q 043523          352 LVGVIPESVCKG--------IYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLG  423 (650)
Q Consensus       352 ~~~~~~~~l~~~--------~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls  423 (650)
                      +. .+|..+...        ++|+.|++++|.+. .+|..+....+++|+.|++++|.+.+ ++.. +..+++|+.|+++
T Consensus       709 L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~-l~~L~~L~~L~Ls  784 (876)
T 4ecn_A          709 MT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ-PLNSSQLKAFGIR  784 (876)
T ss_dssp             CS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCG-GGGCTTCCEEECC
T ss_pred             CC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchh-hhcCCCCCEEECC
Confidence            77 444433322        25666666666655 44444331122355555555555553 3333 4455555555554


Q ss_pred             C------CccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccc
Q 043523          424 G------NQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS  476 (650)
Q Consensus       424 ~------~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  476 (650)
                      +      |++.+..|..+..+++|++|+|++|++.. +|..+.  ++|+.|+|++|++.
T Consensus       785 ~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~-Ip~~l~--~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLT--PQLYILDIADNPNI  840 (876)
T ss_dssp             CCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-CCSCCC--SSSCEEECCSCTTC
T ss_pred             CCCCcccccccccChHHHhcCCCCCEEECCCCCCCc-cCHhhc--CCCCEEECCCCCCC
Confidence            3      33444444444445555555555554432 232222  34444455444444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.3e-36  Score=312.38  Aligned_cols=405  Identities=19%  Similarity=0.170  Sum_probs=266.7

Q ss_pred             CCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCcccc-CCCcCccCCCCCcEEEcc
Q 043523           23 LETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTG-PIPPSMANLTQLFHMDFS  101 (650)
Q Consensus        23 L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~l~  101 (650)
                      -+.++.+++.++....  +.  ++|++|+|++|.+.+..|..|+++++|++|++++|.+.+ ..+.+|.++++|++|+++
T Consensus        12 ~~~~~c~~~~l~~lp~--l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           12 GYNAICINRGLHQVPE--LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TTEEECCSSCCSSCCC--CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             ccccCcCCCCcccCCC--CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            3467777777744432  33  689999999998887778889999999999999988863 446678889999999999


Q ss_pred             CCcccccC-CccccCCCcCEEeCCCCcCcccCC-hHHHhccccCCeEEccCCcCCCCcchh-ccCCCCCCEEEccCCcCC
Q 043523          102 SNHFSGHI-PSLHKSRNLKYLDLSFNNLSGGIS-STFWEQLVNLNLVLLSHNSLNGSIPRS-LFLLPNLETLWLSNNQFE  178 (650)
Q Consensus       102 ~~~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~  178 (650)
                      +|++.... ..+..+++|++|++++|.+++..+ ...+..+++|++|++++|.+....+.. +..+++|++|++++|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            98887764 467778888888888888764222 122567777888888888777665554 667777777777777766


Q ss_pred             CCCchhh-hcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCC
Q 043523          179 NQLPEIS-NVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNN  257 (650)
Q Consensus       179 ~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~  257 (650)
                      ...+... ....                         ++|+.+++++|.+..+..........+.+..+++|++|++++|
T Consensus       168 ~~~~~~l~~l~~-------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  222 (455)
T 3v47_A          168 SICEEDLLNFQG-------------------------KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN  222 (455)
T ss_dssp             CCCTTTSGGGTT-------------------------CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS
T ss_pred             ccChhhhhcccc-------------------------ccccccccccCcccccchhhccccccccccccceeeeEecCCC
Confidence            4333211 1112                         3444444444444332211110011111344567888888888


Q ss_pred             cCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhh
Q 043523          258 QIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGN  337 (650)
Q Consensus       258 ~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~  337 (650)
                      .+.+..|.++.....                     .++++.+++++|...+....           .+.+.......+.
T Consensus       223 ~l~~~~~~~~~~~~~---------------------~~~L~~L~l~~~~~~~~~~~-----------~~~~~~~~~~~~~  270 (455)
T 3v47_A          223 GFKESMAKRFFDAIA---------------------GTKIQSLILSNSYNMGSSFG-----------HTNFKDPDNFTFK  270 (455)
T ss_dssp             CCCHHHHHHHHHHTT---------------------TCCEEEEECTTCTTTSCCTT-----------CCSSCCCCTTTTG
T ss_pred             cccccchhhhhcccc---------------------ccceeeEeeccccccccccc-----------hhhhccCcccccc
Confidence            887666666654311                     13344444444433221110           0011100000000


Q ss_pred             ccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCc
Q 043523          338 FMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGL  417 (650)
Q Consensus       338 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L  417 (650)
                                            -...++|+.|++++|.+.+..+..+....  +|++|++++|.+. .++...|..+++|
T Consensus       271 ----------------------~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~-~~~~~~~~~l~~L  325 (455)
T 3v47_A          271 ----------------------GLEASGVKTCDLSKSKIFALLKSVFSHFT--DLEQLTLAQNEIN-KIDDNAFWGLTHL  325 (455)
T ss_dssp             ----------------------GGTTSCCCEEECCSSCCCEECTTTTTTCT--TCCEEECTTSCCC-EECTTTTTTCTTC
T ss_pred             ----------------------cccccCceEEEecCccccccchhhcccCC--CCCEEECCCCccc-ccChhHhcCcccC
Confidence                                  00123455555555555544444443332  6666666666666 3333348888999


Q ss_pred             cEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCC
Q 043523          418 QILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLA  497 (650)
Q Consensus       418 ~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~  497 (650)
                      ++|++++|.+++..+..+..+++|++|+|++|++.+..+..+..+++|++|++++|++++..  ...+..+++|++|+++
T Consensus       326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~  403 (455)
T 3v47_A          326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP--DGIFDRLTSLQKIWLH  403 (455)
T ss_dssp             CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECC
T ss_pred             CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC--HhHhccCCcccEEEcc
Confidence            99999999998888889999999999999999999988889999999999999999998654  4567889999999999


Q ss_pred             CcccccccC-hHHHHhHHh
Q 043523          498 SNKFSGRLS-QKWLLTMEE  515 (650)
Q Consensus       498 ~n~~~~~~~-~~~~~~l~~  515 (650)
                      +|++.+.++ ..|+.+|..
T Consensus       404 ~N~l~~~~~~~~~l~~~l~  422 (455)
T 3v47_A          404 TNPWDCSCPRIDYLSRWLN  422 (455)
T ss_dssp             SSCBCCCTTTTHHHHHHHH
T ss_pred             CCCcccCCCcchHHHHHHH
Confidence            999999998 666665543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.4e-35  Score=309.26  Aligned_cols=102  Identities=17%  Similarity=0.259  Sum_probs=58.2

Q ss_pred             cEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccc-cC-CccccCCCcCEEeCCC
Q 043523           48 RNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSG-HI-PSLHKSRNLKYLDLSF  125 (650)
Q Consensus        48 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~-~~-~~~~~~~~L~~L~l~~  125 (650)
                      +.++.++++++ .+|. +  .++|++|++++|.+++..|..|.++++|++|++++|.+.. .. ..+..+++|++|++++
T Consensus        13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            45666666666 4554 2  2677777777777776667777777777777777776642 21 2344555555555555


Q ss_pred             CcCcccCChHHHhccccCCeEEccCCcCC
Q 043523          126 NNLSGGISSTFWEQLVNLNLVLLSHNSLN  154 (650)
Q Consensus       126 ~~l~~~~~~~~~~~l~~L~~L~l~~~~~~  154 (650)
                      |.+++..+.. ++++++|++|++++|.+.
T Consensus        89 n~l~~~~~~~-~~~l~~L~~L~L~~n~l~  116 (455)
T 3v47_A           89 NQFLQLETGA-FNGLANLEVLTLTQCNLD  116 (455)
T ss_dssp             CTTCEECTTT-TTTCTTCCEEECTTSCCB
T ss_pred             CccCccChhh-ccCcccCCEEeCCCCCCC
Confidence            5554332322 344444444444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.7e-35  Score=304.85  Aligned_cols=406  Identities=23%  Similarity=0.256  Sum_probs=168.0

Q ss_pred             CCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEE
Q 043523           92 LTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLW  171 (650)
Q Consensus        92 l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  171 (650)
                      .++|++|++++|.+..+++.+.++++|++|++++|.+.+.++.. ++.+++|+.+++.+|..           .++++|+
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~-----------~~l~~L~   77 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLD-----------RQAHELE   77 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred             cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhc-----------cCCCEEE
Confidence            46677777777777656666777777777777777666555555 45555555555544421           3456666


Q ss_pred             ccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcE
Q 043523          172 LSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSG  251 (650)
Q Consensus       172 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~  251 (650)
                      +++|.+.. ++.    ..++|+.|++++|.+.+ +|.    .+++|+.|++++|.++.+.          .+  .++|++
T Consensus        78 l~~~~l~~-lp~----~~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~----------~~--~~~L~~  135 (454)
T 1jl5_A           78 LNNLGLSS-LPE----LPPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALS----------DL--PPLLEY  135 (454)
T ss_dssp             CTTSCCSC-CCS----CCTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCC----------SC--CTTCCE
T ss_pred             ecCCcccc-CCC----CcCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCccc----------CC--CCCCCE
Confidence            66666552 221    12456666666666553 442    2355555666555544211          00  134445


Q ss_pred             EEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCC
Q 043523          252 LDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFI  331 (650)
Q Consensus       252 L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~  331 (650)
                      |++++|.                          ++.++....+++|+++++++|++.+ .+....++++|++++|+++.+
T Consensus       136 L~L~~n~--------------------------l~~lp~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~l  188 (454)
T 1jl5_A          136 LGVSNNQ--------------------------LEKLPELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEEL  188 (454)
T ss_dssp             EECCSSC--------------------------CSSCCCCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSC
T ss_pred             EECcCCC--------------------------CCCCcccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCcC
Confidence            5555444                          4444433344555555555555443 223334555555555555544


Q ss_pred             chhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCccc
Q 043523          332 PADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIF  411 (650)
Q Consensus       332 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  411 (650)
                      +.  +..+++|+.+++++|.+.+ +|..   ..+|+.|++++|.+. .+|. +.  ..++|++|++++|++. .++..  
T Consensus       189 ~~--~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~--~l~~L~~L~l~~N~l~-~l~~~--  255 (454)
T 1jl5_A          189 PE--LQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQ--NLPFLTTIYADNNLLK-TLPDL--  255 (454)
T ss_dssp             CC--CTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CT--TCTTCCEEECCSSCCS-SCCSC--
T ss_pred             cc--ccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cC--CCCCCCEEECCCCcCC-ccccc--
Confidence            41  2235555555555555443 1111   134555555555554 3332 22  2235555555555554 22221  


Q ss_pred             CCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCC-CC
Q 043523          412 PRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSW-PL  490 (650)
Q Consensus       412 ~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~~  490 (650)
                        .++|++|++++|++++ .|..   .++|++|++++|++.++ +.   -.++|++|++++|++++..       .+ ++
T Consensus       256 --~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i~-------~~~~~  318 (454)
T 1jl5_A          256 --PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSLC-------DLPPS  318 (454)
T ss_dssp             --CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEEC-------CCCTT
T ss_pred             --ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCccc-------CCcCc
Confidence              2455555555555553 2221   24555555555555541 11   1245555555555554321       11 35


Q ss_pred             CCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCC
Q 043523          491 LQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSN  570 (650)
Q Consensus       491 L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~  570 (650)
                      |++|++++|.+++ .+                                                  ..++.|++|++++|
T Consensus       319 L~~L~Ls~N~l~~-lp--------------------------------------------------~~~~~L~~L~L~~N  347 (454)
T 1jl5_A          319 LEELNVSNNKLIE-LP--------------------------------------------------ALPPRLERLIASFN  347 (454)
T ss_dssp             CCEEECCSSCCSC-CC--------------------------------------------------CCCTTCCEEECCSS
T ss_pred             CCEEECCCCcccc-cc--------------------------------------------------ccCCcCCEEECCCC
Confidence            5555555555431 00                                                  01345566666666


Q ss_pred             ccccCCCccccCCcCCCEEeCccccCcc--cCCcCccCC-------------CCCCeeeCCCCcCCc--cCCccccCCCC
Q 043523          571 NFEGPIPEEMGRFKSLYALNMSHNALTG--SIPSSFGNL-------------KQIESLDLSMNNLSG--KIPAQLASLNF  633 (650)
Q Consensus       571 ~~~~~~~~~~~~l~~L~~L~ls~n~i~~--~~~~~~~~l-------------~~L~~L~l~~n~i~~--~~~~~l~~l~~  633 (650)
                      .+..+..    .+++|++|++++|++++  .+|.+++.+             ++|++|++++|.+++  .+|      ++
T Consensus       348 ~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP------~s  417 (454)
T 1jl5_A          348 HLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP------ES  417 (454)
T ss_dssp             CCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------------
T ss_pred             ccccccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch------hh
Confidence            6553322    24566666666666665  455555554             667777777777765  233      34


Q ss_pred             CCeEEccCCcCcccCC
Q 043523          634 LSVLNLSYNNLVGKIP  649 (650)
Q Consensus       634 L~~L~l~~n~~~~~~p  649 (650)
                      ++.|.+++|.+.+.+|
T Consensus       418 l~~L~~~~~~~~~~~~  433 (454)
T 1jl5_A          418 VEDLRMNSERVVDPYE  433 (454)
T ss_dssp             ----------------
T ss_pred             HhheeCcCcccCCccc
Confidence            5556667766665544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.3e-34  Score=298.29  Aligned_cols=399  Identities=19%  Similarity=0.226  Sum_probs=188.1

Q ss_pred             cccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCC-------------cEEEcCCCc
Q 043523           14 PEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENL-------------TWVEVRRCN   80 (650)
Q Consensus        14 ~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L-------------~~L~L~~~~   80 (650)
                      |+.+ +.++|++|++++|.+ ...++.|.++++|++|++++|.+.+.+|..++++.+|             ++|++++|+
T Consensus         5 p~~~-~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~   82 (454)
T 1jl5_A            5 PRNV-SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG   82 (454)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred             cccc-ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence            4444 358899999999988 5556678889999999999998888888888888765             788888887


Q ss_pred             cccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchh
Q 043523           81 FTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRS  160 (650)
Q Consensus        81 l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  160 (650)
                      +++ +|..   .++|++|++++|.++++++.   .++|++|++++|.+++ ++.    ..++|++|++++|.+.. .+ +
T Consensus        83 l~~-lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~  148 (454)
T 1jl5_A           83 LSS-LPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-E  148 (454)
T ss_dssp             CSC-CCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-C
T ss_pred             ccc-CCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-c
Confidence            773 4432   36778888888877764432   3678888888877763 221    12577777777777774 34 4


Q ss_pred             ccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCC
Q 043523          161 LFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVI  240 (650)
Q Consensus       161 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l  240 (650)
                      +..+++|++|++++|.+.. ++..    ..+|+.|++++|.+.+ +| . +..+++|+.|++++|.++.+.         
T Consensus       149 ~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~-~-~~~l~~L~~L~l~~N~l~~l~---------  211 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LP-E-LQNLPFLTAIYADNNSLKKLP---------  211 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CC-C-CTTCTTCCEEECCSSCCSSCC---------
T ss_pred             cCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc-Cc-c-ccCCCCCCEEECCCCcCCcCC---------
Confidence            7777777777777777663 2221    2356666666666663 44 2 356666666666666554221         


Q ss_pred             CCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccE
Q 043523          241 PILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSY  320 (650)
Q Consensus       241 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~  320 (650)
                       ..  .++|++|++++|.+.                          .++....+++|+.+++++|++.+ .+..++++++
T Consensus       212 -~~--~~~L~~L~l~~n~l~--------------------------~lp~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~  261 (454)
T 1jl5_A          212 -DL--PLSLESIVAGNNILE--------------------------ELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEA  261 (454)
T ss_dssp             -CC--CTTCCEEECCSSCCS--------------------------SCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCE
T ss_pred             -CC--cCcccEEECcCCcCC--------------------------cccccCCCCCCCEEECCCCcCCc-ccccccccCE
Confidence             01  134555555555554                          33333334444444444444433 1222344455


Q ss_pred             EecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCc
Q 043523          321 VDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRN  400 (650)
Q Consensus       321 L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  400 (650)
                      +++++|+++.++..    +++++.+++++|.+.+...    ..++|+.|++++|.+.+ ++.     ..++|++|++++|
T Consensus       262 L~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~-i~~-----~~~~L~~L~Ls~N  327 (454)
T 1jl5_A          262 LNVRDNYLTDLPEL----PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRS-LCD-----LPPSLEELNVSNN  327 (454)
T ss_dssp             EECCSSCCSCCCCC----CTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSE-ECC-----CCTTCCEEECCSS
T ss_pred             EECCCCcccccCcc----cCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCc-ccC-----CcCcCCEEECCCC
Confidence            55555554444332    2455555555555443110    01355555555555542 111     0125666666666


Q ss_pred             cCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCcccc--ccchhhhcC-------------CCC
Q 043523          401 NLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD--NFPCWLGNA-------------SSL  465 (650)
Q Consensus       401 ~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~-------------~~L  465 (650)
                      ++.+ ++..    +++|++|++++|++++ +|.   .+++|++|++++|++.+  ..|..+..+             ++|
T Consensus       328 ~l~~-lp~~----~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L  398 (454)
T 1jl5_A          328 KLIE-LPAL----PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNL  398 (454)
T ss_dssp             CCSC-CCCC----CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------
T ss_pred             cccc-cccc----CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcC
Confidence            5552 3322    3556666666666652 333   34566666666666655  334444333             667


Q ss_pred             CeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccc
Q 043523          466 QVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGR  504 (650)
Q Consensus       466 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  504 (650)
                      ++|++++|++.+...++      ++++.|.+++|.+.+.
T Consensus       399 ~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~  431 (454)
T 1jl5_A          399 KQLHVETNPLREFPDIP------ESVEDLRMNSERVVDP  431 (454)
T ss_dssp             ---------------------------------------
T ss_pred             CEEECCCCcCCccccch------hhHhheeCcCcccCCc
Confidence            77777777765422112      3456666666665543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.3e-32  Score=283.53  Aligned_cols=345  Identities=24%  Similarity=0.289  Sum_probs=187.3

Q ss_pred             CCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHH
Q 043523          189 SSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIW  268 (650)
Q Consensus       189 ~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~  268 (650)
                      +..++.|++.++.+. .+|.  +..+++|+.|++++|.++.+.          .+..+++|++|++++|.+.+..+  +.
T Consensus        45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~----------~~~~l~~L~~L~l~~n~l~~~~~--~~  109 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDIT----------PLKNLTKLVDILMNNNQIADITP--LA  109 (466)
T ss_dssp             HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCG----------GGTTCTTCCEEECCSSCCCCCGG--GT
T ss_pred             hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCch----------hhhccccCCEEECCCCccccChh--hc
Confidence            356777888777776 4543  366778888888877766321          15667777888887777764332  32


Q ss_pred             hhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEcc
Q 043523          269 EVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAA  348 (650)
Q Consensus       269 ~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~  348 (650)
                        ..++|++|++++|.++.++....+++|++|++++|.+.+.                     +.  +..+++|+.++++
T Consensus       110 --~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~--~~~l~~L~~L~l~  164 (466)
T 1o6v_A          110 --NLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI---------------------SA--LSGLTSLQQLSFG  164 (466)
T ss_dssp             --TCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCC---------------------GG--GTTCTTCSEEEEE
T ss_pred             --CCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCC---------------------hh--hccCCcccEeecC
Confidence              2345777777777777776655667777777776665532                     21  1224444444443


Q ss_pred             CCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccc
Q 043523          349 NNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQ  428 (650)
Q Consensus       349 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~  428 (650)
                      + .+.+.  ..+..+++|+.|++++|.+.+. + .+.  ..++|++|++++|.+.+..+   +..+++|++|++++|+++
T Consensus       165 ~-~~~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~--~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~  234 (466)
T 1o6v_A          165 N-QVTDL--KPLANLTTLERLDISSNKVSDI-S-VLA--KLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLK  234 (466)
T ss_dssp             E-SCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGG--GCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCC
T ss_pred             C-cccCc--hhhccCCCCCEEECcCCcCCCC-h-hhc--cCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcc
Confidence            2 22211  1244555555555555554421 1 111  12255555555555543222   344555555555555554


Q ss_pred             cccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChH
Q 043523          429 GVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQK  508 (650)
Q Consensus       429 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  508 (650)
                      +.  ..+..+++|++|++++|++.+..+  +..+++|++|++++|.+....    .+..+++|++|++++|.+.+..+  
T Consensus       235 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~L~~n~l~~~~~--  304 (466)
T 1o6v_A          235 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS----PLAGLTALTNLELNENQLEDISP--  304 (466)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCSCCGG--
T ss_pred             cc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc----cccCCCccCeEEcCCCcccCchh--
Confidence            32  234555555555555555555332  455555555555555554322    14455555556655555432111  


Q ss_pred             HHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCE
Q 043523          509 WLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYA  588 (650)
Q Consensus       509 ~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~  588 (650)
                                                                     +..+++|+.|++++|.+.+..+  +..+++|++
T Consensus       305 -----------------------------------------------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  335 (466)
T 1o6v_A          305 -----------------------------------------------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR  335 (466)
T ss_dssp             -----------------------------------------------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred             -----------------------------------------------hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence                                                           1234555556666665554433  455566666


Q ss_pred             EeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCcc
Q 043523          589 LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG  646 (650)
Q Consensus       589 L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  646 (650)
                      |++++|++++.  ..++.+++|++|++++|++++..|  +..+++|+.|++++|++++
T Consensus       336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            66666655533  345556666666666666655544  5556666666666665554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=6e-32  Score=281.56  Aligned_cols=190  Identities=24%  Similarity=0.291  Sum_probs=113.0

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEE
Q 043523           19 QVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHM   98 (650)
Q Consensus        19 ~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L   98 (650)
                      ++++++.|+++++.+..  .+.+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+..+  +.++++|++|
T Consensus        44 ~l~~l~~L~l~~~~i~~--l~~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHHTCCEEECCSSCCCC--CTTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             HhccccEEecCCCCCcc--CcchhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            45677778887777643  34566777788888887777743 33 7777777777777777774333  7777777777


Q ss_pred             EccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCC
Q 043523           99 DFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFE  178 (650)
Q Consensus        99 ~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  178 (650)
                      ++++|.+...++ +..+++|++|++++|.+.+ ++ . +..+++|+.|++. +.+...  ..+..+++|++|++++|.+.
T Consensus       118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~-~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          118 TLFNNQITDIDP-LKNLTNLNRLELSSNTISD-IS-A-LSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             ECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CG-G-GTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCChH-HcCCCCCCEEECCCCccCC-Ch-h-hccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC
Confidence            777777765543 6667777777777777653 22 2 5667777777765 333322  23666666666666666554


Q ss_pred             CCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCcc
Q 043523          179 NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKF  227 (650)
Q Consensus       179 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~  227 (650)
                      .. +.  ...+++|+.|++++|.+.+..+   +..+++|+.|++++|.+
T Consensus       191 ~~-~~--l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l  233 (466)
T 1o6v_A          191 DI-SV--LAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQL  233 (466)
T ss_dssp             CC-GG--GGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCC
T ss_pred             CC-hh--hccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCc
Confidence            21 11  1223444444444444442222   23344444444444433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.3e-32  Score=281.78  Aligned_cols=365  Identities=21%  Similarity=0.214  Sum_probs=224.1

Q ss_pred             CcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcC
Q 043523            9 LQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPS   88 (650)
Q Consensus         9 i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~   88 (650)
                      ..+..+..++++++|++|++++|.++..  +.|..+++|++|++++|.+++ ++  ++.+++|++|++++|.+++. +  
T Consensus        30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--  101 (457)
T 3bz5_A           30 MQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--  101 (457)
T ss_dssp             CCTTSEEEHHHHTTCCEEECCSSCCCCC--TTGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--
T ss_pred             cCcccccChhHcCCCCEEEccCCCcccC--hhhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--
Confidence            3444556677888888888888887543  467788888888888888874 33  77888888888888888753 3  


Q ss_pred             ccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCC
Q 043523           89 MANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLE  168 (650)
Q Consensus        89 l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~  168 (650)
                      ++++++|++|++++|++...+  +..+++|++|++++|.+++ ++   ++.+++|++|++++|......  .+..+++|+
T Consensus       102 ~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~  173 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLT  173 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred             cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence            778888888888888877642  6677777888887777764 22   456666777777666332222  344555555


Q ss_pred             EEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCC
Q 043523          169 TLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQ  248 (650)
Q Consensus       169 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~  248 (650)
                      .|++++|.+..                          +|   +..+++|+.|++++|.++.++           +..+++
T Consensus       174 ~L~ls~n~l~~--------------------------l~---l~~l~~L~~L~l~~N~l~~~~-----------l~~l~~  213 (457)
T 3bz5_A          174 TLDCSFNKITE--------------------------LD---VSQNKLLNRLNCDTNNITKLD-----------LNQNIQ  213 (457)
T ss_dssp             EEECCSSCCCC--------------------------CC---CTTCTTCCEEECCSSCCSCCC-----------CTTCTT
T ss_pred             EEECCCCccce--------------------------ec---cccCCCCCEEECcCCcCCeec-----------cccCCC
Confidence            55555555442                          22   244455555555555544221           334445


Q ss_pred             CcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcC
Q 043523          249 LSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHF  328 (650)
Q Consensus       249 L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i  328 (650)
                      |++|++++|.+.+ +|  +.  ..++|+.|++++|.++.++ ...+++|+.++++.+                       
T Consensus       214 L~~L~Ls~N~l~~-ip--~~--~l~~L~~L~l~~N~l~~~~-~~~l~~L~~L~l~~n-----------------------  264 (457)
T 3bz5_A          214 LTFLDCSSNKLTE-ID--VT--PLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQT-----------------------  264 (457)
T ss_dssp             CSEEECCSSCCSC-CC--CT--TCTTCSEEECCSSCCSCCC-CTTCTTCCEEECTTC-----------------------
T ss_pred             CCEEECcCCcccc-cC--cc--ccCCCCEEEeeCCcCCCcC-HHHCCCCCEEeccCC-----------------------
Confidence            5555555555442 22  11  1122333333333333332 222344444443332                       


Q ss_pred             CCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCC
Q 043523          329 TFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSD  408 (650)
Q Consensus       329 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  408 (650)
                                  +++.+++++|...+.+|  +..+++|+.|++++|...+.+|..     ..+|+.|++           
T Consensus       265 ------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~-----~~~L~~L~l-----------  314 (457)
T 3bz5_A          265 ------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ-----AAGITELDL-----------  314 (457)
T ss_dssp             ------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT-----TCCCSCCCC-----------
T ss_pred             ------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC-----CCcceEech-----------
Confidence                        22333444444444443  345677777777777765544421     114444443           


Q ss_pred             cccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCC
Q 043523          409 TIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSW  488 (650)
Q Consensus       409 ~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  488 (650)
                         ..+++|++|++++|++++.   .+..+++|+.|++++|++.+        ++.|..|.+++|.+.+.       ..+
T Consensus       315 ---~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-------~~~  373 (457)
T 3bz5_A          315 ---SQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-------GQT  373 (457)
T ss_dssp             ---TTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-------EEE
T ss_pred             ---hhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-------cee
Confidence               3446788889998888864   27888899999999998876        35677778888887643       244


Q ss_pred             CCCCeeeCCCcccccccChHH
Q 043523          489 PLLQIVDLASNKFSGRLSQKW  509 (650)
Q Consensus       489 ~~L~~L~l~~n~~~~~~~~~~  509 (650)
                      ..|..+++++|.+++.+|..+
T Consensus       374 ~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          374 ITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             EECCCBCCBTTBEEEECCTTC
T ss_pred             eecCccccccCcEEEEcChhH
Confidence            567888999999888877654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=7.2e-32  Score=278.11  Aligned_cols=320  Identities=23%  Similarity=0.199  Sum_probs=175.0

Q ss_pred             CCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhc
Q 043523           60 TLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQ  139 (650)
Q Consensus        60 ~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  139 (650)
                      ..+..++++++|++|++++|.+++ .| .+.++++|++|++++|.+++.+  +..+++|++|++++|.+++. +   +++
T Consensus        33 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~---~~~  104 (457)
T 3bz5_A           33 TDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D---VTP  104 (457)
T ss_dssp             TSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C---CTT
T ss_pred             ccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e---cCC
Confidence            334455666777777777776663 34 5666677777777776666542  55556666666666665532 1   445


Q ss_pred             cccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcE
Q 043523          140 LVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYT  219 (650)
Q Consensus       140 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~  219 (650)
                      +++|++|++++|.+... +  +..+++|++|                         ++++|.+.+ ++   +..+++|+.
T Consensus       105 l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L-------------------------~l~~N~l~~-l~---l~~l~~L~~  152 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTKL-D--VSQNPLLTYL-------------------------NCARNTLTE-ID---VSHNTQLTE  152 (457)
T ss_dssp             CTTCCEEECCSSCCSCC-C--CTTCTTCCEE-------------------------ECTTSCCSC-CC---CTTCTTCCE
T ss_pred             CCcCCEEECCCCcCCee-c--CCCCCcCCEE-------------------------ECCCCccce-ec---cccCCcCCE
Confidence            55555555555555432 1  3344444444                         444444442 22   256677888


Q ss_pred             EeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccE
Q 043523          220 LDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRL  299 (650)
Q Consensus       220 L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~  299 (650)
                      |++++|...         ..+ .+..+++|++|++++|.+.+ +|  +.  ..++|+.|++++|.++.+           
T Consensus       153 L~l~~n~~~---------~~~-~~~~l~~L~~L~ls~n~l~~-l~--l~--~l~~L~~L~l~~N~l~~~-----------  206 (457)
T 3bz5_A          153 LDCHLNKKI---------TKL-DVTPQTQLTTLDCSFNKITE-LD--VS--QNKLLNRLNCDTNNITKL-----------  206 (457)
T ss_dssp             EECTTCSCC---------CCC-CCTTCTTCCEEECCSSCCCC-CC--CT--TCTTCCEEECCSSCCSCC-----------
T ss_pred             EECCCCCcc---------ccc-ccccCCcCCEEECCCCccce-ec--cc--cCCCCCEEECcCCcCCee-----------
Confidence            888777422         111 15566777777777777763 33  11  223455555555555544           


Q ss_pred             EEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCcccccc
Q 043523          300 LDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGT  379 (650)
Q Consensus       300 L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  379 (650)
                                 ....+++|++|++++|+++.+|   ...+++|+.+++++|.+.+..   ...+++|+.|+++++     
T Consensus       207 -----------~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n-----  264 (457)
T 3bz5_A          207 -----------DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT-----  264 (457)
T ss_dssp             -----------CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC-----
T ss_pred             -----------ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC-----
Confidence                       2333344444444444444443   223555666666666555432   334555666665543     


Q ss_pred             CChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhh
Q 043523          380 IPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWL  459 (650)
Q Consensus       380 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  459 (650)
                                 +|+.+++++|...+.++   +..+++|+.|++++|...+.+|.   ..++|+.|++++|          
T Consensus       265 -----------~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~----------  317 (457)
T 3bz5_A          265 -----------DLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN----------  317 (457)
T ss_dssp             -----------CCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC----------
T ss_pred             -----------CCCEEECCCCccCCccc---ccccccCCEEECCCCcccceecc---CCCcceEechhhc----------
Confidence                       45566666666555544   34566777777777765544442   2334444444433          


Q ss_pred             hcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccc
Q 043523          460 GNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFS  502 (650)
Q Consensus       460 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  502 (650)
                         ++|++|++++|++++.     .+..+++|+.|++++|++.
T Consensus       318 ---~~L~~L~L~~N~l~~l-----~l~~l~~L~~L~l~~N~l~  352 (457)
T 3bz5_A          318 ---PKLVYLYLNNTELTEL-----DVSHNTKLKSLSCVNAHIQ  352 (457)
T ss_dssp             ---TTCCEEECTTCCCSCC-----CCTTCTTCSEEECCSSCCC
T ss_pred             ---ccCCEEECCCCccccc-----ccccCCcCcEEECCCCCCC
Confidence               5666666666666542     2555666666666666554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.9e-32  Score=281.48  Aligned_cols=278  Identities=17%  Similarity=0.142  Sum_probs=190.7

Q ss_pred             CccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEE
Q 043523          317 NTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLN  396 (650)
Q Consensus       317 ~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  396 (650)
                      +|++|++++|.++.+....+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+....  +|++|+
T Consensus        57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~  134 (477)
T 2id5_A           57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY--NLKSLE  134 (477)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEE
T ss_pred             CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc--cCCEEE
Confidence            344444444444433333333355555555555555544444455556666666666665544444443332  666666


Q ss_pred             ccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccc
Q 043523          397 LGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS  476 (650)
Q Consensus       397 l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  476 (650)
                      +++|.+. .+....|..+++|++|++++|++++..+..+..+++|++|++++|.+....+..|..+++|++|++++|+..
T Consensus       135 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~  213 (477)
T 2id5_A          135 VGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL  213 (477)
T ss_dssp             ECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred             CCCCccc-eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence            6666665 333334677777777777777777666666777777777777777777766666777777777777777665


Q ss_pred             eecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcc
Q 043523          477 GHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLL  556 (650)
Q Consensus       477 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (650)
                      +..  +.......+|++|++++|.++. .+.                                              ..+
T Consensus       214 ~~~--~~~~~~~~~L~~L~l~~n~l~~-~~~----------------------------------------------~~~  244 (477)
T 2id5_A          214 DTM--TPNCLYGLNLTSLSITHCNLTA-VPY----------------------------------------------LAV  244 (477)
T ss_dssp             CEE--CTTTTTTCCCSEEEEESSCCCS-CCH----------------------------------------------HHH
T ss_pred             ccc--CcccccCccccEEECcCCcccc-cCH----------------------------------------------HHh
Confidence            443  3334444577777777776652 111                                              122


Q ss_pred             cCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCe
Q 043523          557 KVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSV  636 (650)
Q Consensus       557 ~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~  636 (650)
                      ..++.|+.|++++|.+.++.+..+..+++|++|+|++|++++..+.+|..+++|++|++++|.++...+..|..+++|+.
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  324 (477)
T 2id5_A          245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET  324 (477)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred             cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence            46788899999999998888888899999999999999999888899999999999999999999888888999999999


Q ss_pred             EEccCCcCcc
Q 043523          637 LNLSYNNLVG  646 (650)
Q Consensus       637 L~l~~n~~~~  646 (650)
                      |++++|++..
T Consensus       325 L~l~~N~l~c  334 (477)
T 2id5_A          325 LILDSNPLAC  334 (477)
T ss_dssp             EECCSSCEEC
T ss_pred             EEccCCCccC
Confidence            9999998764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=8.1e-31  Score=262.62  Aligned_cols=307  Identities=20%  Similarity=0.268  Sum_probs=221.0

Q ss_pred             CCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEe
Q 043523          243 LKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVD  322 (650)
Q Consensus       243 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~  322 (650)
                      +..++++++|+++++.+. .++. +..  .++|++|++++|.++.++....+++|++|++++|.                
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~~-~~~--~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~----------------   99 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQG-IEY--LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNK----------------   99 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCTT-GGG--CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC----------------
T ss_pred             chhcccccEEEEeCCccc-cchh-hhh--cCCccEEEccCCccccchhhhcCCcCCEEEccCCc----------------
Confidence            345566777777777665 3332 222  23466666666666665554445555555555554                


Q ss_pred             cCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccC
Q 043523          323 YSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNL  402 (650)
Q Consensus       323 l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  402 (650)
                           ++.++.  +..+++|+++++++|.+.+..+  +..+++|+.|++++|......+. +.  ..++|++|++++|.+
T Consensus       100 -----i~~~~~--~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~--~l~~L~~L~l~~~~~  167 (347)
T 4fmz_A          100 -----ITDISA--LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LS--NMTGLNYLTVTESKV  167 (347)
T ss_dssp             -----CCCCGG--GTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GT--TCTTCCEEECCSSCC
T ss_pred             -----ccCchH--HcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hh--hCCCCcEEEecCCCc
Confidence                 444331  3346677777777776665433  66777788888887755433333 22  234788888888877


Q ss_pred             CCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCC
Q 043523          403 NGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCP  482 (650)
Q Consensus       403 ~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  482 (650)
                      .+..+   +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.++...   
T Consensus       168 ~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~---  237 (347)
T 4fmz_A          168 KDVTP---IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS---  237 (347)
T ss_dssp             CCCGG---GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---
T ss_pred             CCchh---hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc---
Confidence            63322   6778889999999988875433  7788899999999998887544  778899999999999887543   


Q ss_pred             CCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcc
Q 043523          483 RNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIF  562 (650)
Q Consensus       483 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  562 (650)
                       .+..+++|++|++++|.++..                                                 .....+++|
T Consensus       238 -~~~~l~~L~~L~l~~n~l~~~-------------------------------------------------~~~~~l~~L  267 (347)
T 4fmz_A          238 -PLANLSQLTWLEIGTNQISDI-------------------------------------------------NAVKDLTKL  267 (347)
T ss_dssp             -GGTTCTTCCEEECCSSCCCCC-------------------------------------------------GGGTTCTTC
T ss_pred             -chhcCCCCCEEECCCCccCCC-------------------------------------------------hhHhcCCCc
Confidence             277888999999999877531                                                 012357889


Q ss_pred             cEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCC
Q 043523          563 TSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN  642 (650)
Q Consensus       563 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  642 (650)
                      ++|++++|.+.++  ..+..+++|++|++++|++++..+..++.+++|++|++++|.+++..|  +..+++|+.|++++|
T Consensus       268 ~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          268 KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ  343 (347)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC
T ss_pred             CEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhh
Confidence            9999999998865  468889999999999999998888999999999999999999998766  999999999999999


Q ss_pred             cCc
Q 043523          643 NLV  645 (650)
Q Consensus       643 ~~~  645 (650)
                      +++
T Consensus       344 ~i~  346 (347)
T 4fmz_A          344 VIK  346 (347)
T ss_dssp             ---
T ss_pred             ccc
Confidence            986

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=6.4e-31  Score=275.32  Aligned_cols=297  Identities=20%  Similarity=0.197  Sum_probs=254.8

Q ss_pred             cEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCcccc
Q 043523          298 RLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLS  377 (650)
Q Consensus       298 ~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  377 (650)
                      +.++.+++.+.......+++++.|++++|+++.++...+..+++|++|++++|.+.+..|..+.++++|+.|++++|.+.
T Consensus        14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~   93 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK   93 (477)
T ss_dssp             TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence            34555555555544445567888888888888777766777999999999999999999999999999999999999988


Q ss_pred             ccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccch
Q 043523          378 GTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPC  457 (650)
Q Consensus       378 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  457 (650)
                      ...+..+...  ++|++|++++|.+.+. ....|..+++|++|++++|.+.+..+.+|..+++|++|++++|++....+.
T Consensus        94 ~~~~~~~~~l--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           94 LIPLGVFTGL--SNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             SCCTTSSTTC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             ccCcccccCC--CCCCEEECCCCccccC-ChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            4444444443  4999999999999844 444599999999999999999988888999999999999999999998888


Q ss_pred             hhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCC
Q 043523          458 WLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSN  537 (650)
Q Consensus       458 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~  537 (650)
                      .+..+++|++|++++|.+....  ...+..+++|++|++++|+.....+...                            
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~----------------------------  220 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIR--DYSFKRLYRLKVLEISHWPYLDTMTPNC----------------------------  220 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEEC--TTCSCSCTTCCEEEEECCTTCCEECTTT----------------------------
T ss_pred             HhcccCCCcEEeCCCCcCcEeC--hhhcccCcccceeeCCCCccccccCccc----------------------------
Confidence            8999999999999999998775  6678899999999999997654433221                            


Q ss_pred             ceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCC
Q 043523          538 QFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSM  617 (650)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~  617 (650)
                                         ....+|++|++++|.+..+....+..+++|+.|+|++|++++..+..|..+++|++|++++
T Consensus       221 -------------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  281 (477)
T 2id5_A          221 -------------------LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG  281 (477)
T ss_dssp             -------------------TTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCS
T ss_pred             -------------------ccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCC
Confidence                               1234899999999999987777899999999999999999988888999999999999999


Q ss_pred             CcCCccCCccccCCCCCCeEEccCCcCcc
Q 043523          618 NNLSGKIPAQLASLNFLSVLNLSYNNLVG  646 (650)
Q Consensus       618 n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  646 (650)
                      |.+++..+..|.++++|+.|++++|.+++
T Consensus       282 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  310 (477)
T 2id5_A          282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTT  310 (477)
T ss_dssp             SCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred             CccceECHHHhcCcccCCEEECCCCcCce
Confidence            99999999999999999999999999985

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=1.2e-30  Score=265.50  Aligned_cols=115  Identities=20%  Similarity=0.170  Sum_probs=77.5

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL  470 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  470 (650)
                      +|++|++++|.+.+. ....|..+++|++|++++|++++ .+..+..+++|++|++++|++.. .+..+..+++|++|++
T Consensus       249 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L  325 (390)
T 3o6n_A          249 GLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYL  325 (390)
T ss_dssp             TCSEEECCSSCCCEE-ESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEEC
T ss_pred             CccEEECCCCcCCCc-ChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEEC
Confidence            444444444444422 22336667777777777777763 44455667888888888888876 4555777888888888


Q ss_pred             cCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhH
Q 043523          471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTM  513 (650)
Q Consensus       471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l  513 (650)
                      ++|+++..     .+..+++|++|++++|++.+.....|+..+
T Consensus       326 ~~N~i~~~-----~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~  363 (390)
T 3o6n_A          326 DHNSIVTL-----KLSTHHTLKNLTLSHNDWDCNSLRALFRNV  363 (390)
T ss_dssp             CSSCCCCC-----CCCTTCCCSEEECCSSCEEHHHHHHHTTTC
T ss_pred             CCCcccee-----CchhhccCCEEEcCCCCccchhHHHHHHHH
Confidence            88887643     256678888999999988876655554443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=3.2e-29  Score=251.02  Aligned_cols=306  Identities=21%  Similarity=0.281  Sum_probs=233.0

Q ss_pred             hcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCc
Q 043523          212 FELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEP  291 (650)
Q Consensus       212 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~  291 (650)
                      ..+++|+.|+++++.+..+          +.+..+++|++|++++|.+.+ ++. +.  ..++|++|++++|.++.++..
T Consensus        41 ~~l~~L~~L~l~~~~i~~~----------~~~~~~~~L~~L~l~~n~i~~-~~~-~~--~l~~L~~L~L~~n~i~~~~~~  106 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASI----------QGIEYLTNLEYLNLNGNQITD-ISP-LS--NLVKLTNLYIGTNKITDISAL  106 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCC----------TTGGGCTTCCEEECCSSCCCC-CGG-GT--TCTTCCEEECCSSCCCCCGGG
T ss_pred             hhcccccEEEEeCCccccc----------hhhhhcCCccEEEccCCcccc-chh-hh--cCCcCCEEEccCCcccCchHH
Confidence            6789999999999988643          337778999999999999984 443 33  345799999999999988776


Q ss_pred             ccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEEC
Q 043523          292 YSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDL  371 (650)
Q Consensus       292 ~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l  371 (650)
                      ..+++|+++++++|.+.+.                     +.  +..+++++.+++++|......+ .+..+++|+.|++
T Consensus       107 ~~l~~L~~L~l~~n~i~~~---------------------~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l  162 (347)
T 4fmz_A          107 QNLTNLRELYLNEDNISDI---------------------SP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTV  162 (347)
T ss_dssp             TTCTTCSEEECTTSCCCCC---------------------GG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEEC
T ss_pred             cCCCcCCEEECcCCcccCc---------------------hh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEe
Confidence            6777888777777765532                     22  2235666666666665443333 3677778888888


Q ss_pred             cCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCcc
Q 043523          372 SNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHI  451 (650)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l  451 (650)
                      ++|.+.+..+  +.  ..++|++|++++|.+.+ ++.  +..+++|+.|++++|.+.+..+  +..+++|++|++++|++
T Consensus       163 ~~~~~~~~~~--~~--~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l  233 (347)
T 4fmz_A          163 TESKVKDVTP--IA--NLTDLYSLSLNYNQIED-ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI  233 (347)
T ss_dssp             CSSCCCCCGG--GG--GCTTCSEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred             cCCCcCCchh--hc--cCCCCCEEEccCCcccc-ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCcc
Confidence            8887763332  22  23488888888888763 332  7788889999999998875544  77889999999999998


Q ss_pred             ccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccce
Q 043523          452 SDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLR  531 (650)
Q Consensus       452 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~  531 (650)
                      .+..+  +..+++|++|++++|.++..    ..+..+++|++|++++|.+... +                         
T Consensus       234 ~~~~~--~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~l~~n~l~~~-~-------------------------  281 (347)
T 4fmz_A          234 TDLSP--LANLSQLTWLEIGTNQISDI----NAVKDLTKLKMLNVGSNQISDI-S-------------------------  281 (347)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSSCCCCC-G-------------------------
T ss_pred             CCCcc--hhcCCCCCEEECCCCccCCC----hhHhcCCCcCEEEccCCccCCC-h-------------------------
Confidence            88544  78899999999999988753    4577889999999999977532 0                         


Q ss_pred             eeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCC
Q 043523          532 YVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIE  611 (650)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~  611 (650)
                                             .+..++.|++|++++|.+.+..+..+..+++|++|++++|++++..|  ++.+++|+
T Consensus       282 -----------------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  336 (347)
T 4fmz_A          282 -----------------------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD  336 (347)
T ss_dssp             -----------------------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred             -----------------------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence                                   12357889999999999998888889999999999999999997655  78899999


Q ss_pred             eeeCCCCcCC
Q 043523          612 SLDLSMNNLS  621 (650)
Q Consensus       612 ~L~l~~n~i~  621 (650)
                      +|++++|.++
T Consensus       337 ~L~l~~N~i~  346 (347)
T 4fmz_A          337 SADFANQVIK  346 (347)
T ss_dssp             EESSSCC---
T ss_pred             eeehhhhccc
Confidence            9999999986

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.4e-29  Score=271.60  Aligned_cols=114  Identities=20%  Similarity=0.181  Sum_probs=75.7

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL  470 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  470 (650)
                      +|++|++++|.+.+..+ ..|..+++|+.|++++|.+++ +|..+..+++|++|+|++|++.. +|..+..+++|++|++
T Consensus       255 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L  331 (597)
T 3oja_B          255 GLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYL  331 (597)
T ss_dssp             TCSEEECCSSCCCEEES-GGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEEC
T ss_pred             CCCEEECCCCccCCCCH-HHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEEC
Confidence            44444444444442222 226666777777777777764 45555667788888888888875 5566677888888888


Q ss_pred             cCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHh
Q 043523          471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLT  512 (650)
Q Consensus       471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  512 (650)
                      ++|+++..     .+..+++|+.|++++|++.|.+...|+..
T Consensus       332 ~~N~l~~~-----~~~~~~~L~~L~l~~N~~~~~~~~~~~~~  368 (597)
T 3oja_B          332 DHNSIVTL-----KLSTHHTLKNLTLSHNDWDCNSLRALFRN  368 (597)
T ss_dssp             CSSCCCCC-----CCCTTCCCSEEECCSSCEEHHHHHHHTTT
T ss_pred             CCCCCCCc-----ChhhcCCCCEEEeeCCCCCChhHHHHHHH
Confidence            88887633     25667888888888888887665555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=4e-29  Score=254.28  Aligned_cols=308  Identities=18%  Similarity=0.133  Sum_probs=204.8

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEE
Q 043523           19 QVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHM   98 (650)
Q Consensus        19 ~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L   98 (650)
                      .++++++|+++++.+.......|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            34677777777777655444446667777777777777765555677777777777777777776666667777777777


Q ss_pred             EccCCcccccCCcc-ccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcC
Q 043523           99 DFSSNHFSGHIPSL-HKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQF  177 (650)
Q Consensus        99 ~l~~~~i~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  177 (650)
                      ++++|.+...++.+ ..+++|++|++++|.+.+..+.. ++++++|++|++++|.+...   .+..+++|+.+++++|.+
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhh-ccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            77777777666543 56677777777777776433333 66777777777777776644   245566777777777765


Q ss_pred             CCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCC
Q 043523          178 ENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNN  257 (650)
Q Consensus       178 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~  257 (650)
                      ...      .....|+.+++++|.+. .++.   ...++|+.|++++|.++..          +.+..+++|++|++++|
T Consensus       199 ~~~------~~~~~L~~L~l~~n~l~-~~~~---~~~~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~Ls~n  258 (390)
T 3o6n_A          199 STL------AIPIAVEELDASHNSIN-VVRG---PVNVELTILKLQHNNLTDT----------AWLLNYPGLVEVDLSYN  258 (390)
T ss_dssp             SEE------ECCSSCSEEECCSSCCC-EEEC---CCCSSCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSS
T ss_pred             ccc------CCCCcceEEECCCCeee-eccc---cccccccEEECCCCCCccc----------HHHcCCCCccEEECCCC
Confidence            521      12356777777777766 3333   2246777777777766532          23566677777777777


Q ss_pred             cCCCCCChhHHhhcCcccceeeeccccccCCcCcc-cCCcccEEEeccCcCCCCCCC--CCCCccEEecCCCcCCCCchh
Q 043523          258 QIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPY-SISSIRLLDLHSNQLRGNIPH--MSTNTSYVDYSNNHFTFIPAD  334 (650)
Q Consensus       258 ~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~-~l~~L~~L~l~~~~l~~~~~~--~~~~L~~L~l~~~~i~~~~~~  334 (650)
                      .+.+..|..+...  ++|++|++++|.++.++... .+++|+.|++++|.+.+....  .+++|++|++++|+++.++  
T Consensus       259 ~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--  334 (390)
T 3o6n_A          259 ELEKIMYHPFVKM--QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--  334 (390)
T ss_dssp             CCCEEESGGGTTC--SSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--
T ss_pred             cCCCcChhHcccc--ccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--
Confidence            7765556655443  34777777777777765544 367788888888777643322  3467788888888877665  


Q ss_pred             hhhccCCccEEEccCCccccc
Q 043523          335 IGNFMSETEYFFAANNSLVGV  355 (650)
Q Consensus       335 ~~~~~~~l~~l~l~~~~~~~~  355 (650)
                       ...+++|+.+++++|.+...
T Consensus       335 -~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          335 -LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             -CCTTCCCSEEECCSSCEEHH
T ss_pred             -chhhccCCEEEcCCCCccch
Confidence             23477888888888877654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.6e-28  Score=243.78  Aligned_cols=289  Identities=17%  Similarity=0.224  Sum_probs=226.8

Q ss_pred             cccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCcc
Q 043523          296 SIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNN  375 (650)
Q Consensus       296 ~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  375 (650)
                      +++.++++++.+........+.+++|++++|+++.++...+..+++|+++++++|.+.+..|..+..+++|+.|++++|.
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ  111 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence            45556666655554444445677778888888887777666678899999999999988888889999999999999998


Q ss_pred             ccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCcccc--ccchhcccCCCCCEEeCCCCcccc
Q 043523          376 LSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQG--VVPKSLANCNMLQVLDLKNNHISD  453 (650)
Q Consensus       376 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~  453 (650)
                      +. .+|..+.    ++|++|++++|.+. .++...|..+++|++|++++|.+..  ..+..+..+++|++|++++|.+..
T Consensus       112 l~-~l~~~~~----~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          112 LK-ELPEKMP----KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             CS-BCCSSCC----TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CC-ccChhhc----ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            87 4554433    38999999999988 5555568899999999999998864  567788899999999999999987


Q ss_pred             ccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceee
Q 043523          454 NFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV  533 (650)
Q Consensus       454 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~  533 (650)
                      + |..+  .++|++|++++|+++...  +..+..+++|++|++++|.+....+.                          
T Consensus       186 l-~~~~--~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~--------------------------  234 (330)
T 1xku_A          186 I-PQGL--PPSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNG--------------------------  234 (330)
T ss_dssp             C-CSSC--CTTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTT--------------------------
T ss_pred             C-Cccc--cccCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCceeChh--------------------------
Confidence            4 4333  389999999999988765  66788899999999999987643221                          


Q ss_pred             ccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccC------C
Q 043523          534 ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGN------L  607 (650)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~------l  607 (650)
                                           .+..++.|++|++++|.+. ..+..+..+++|++|++++|++++..+..|..      .
T Consensus       235 ---------------------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~  292 (330)
T 1xku_A          235 ---------------------SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK  292 (330)
T ss_dssp             ---------------------TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTS
T ss_pred             ---------------------hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccc
Confidence                                 1235788999999999998 55567888999999999999999877777754      3


Q ss_pred             CCCCeeeCCCCcCCc--cCCccccCCCCCCeEEccCCc
Q 043523          608 KQIESLDLSMNNLSG--KIPAQLASLNFLSVLNLSYNN  643 (650)
Q Consensus       608 ~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~l~~n~  643 (650)
                      +.|+.|++++|.+..  +.|..|..+++++.+++++|+
T Consensus       293 ~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            789999999999874  677899999999999999985

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.5e-28  Score=244.13  Aligned_cols=288  Identities=17%  Similarity=0.236  Sum_probs=231.4

Q ss_pred             cccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCcc
Q 043523          296 SIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNN  375 (650)
Q Consensus       296 ~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  375 (650)
                      .++.++++++.+.......++++++|++++|.++.++...+..+++|+++++++|.+.+..|..+..+++|+.|++++|.
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  113 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH  113 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred             cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence            35555555555554434445677777788877777766666668999999999999998888999999999999999999


Q ss_pred             ccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCcccc--ccchhcccCCCCCEEeCCCCcccc
Q 043523          376 LSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQG--VVPKSLANCNMLQVLDLKNNHISD  453 (650)
Q Consensus       376 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~  453 (650)
                      +. .+|..+.    ++|++|++++|.+. .++...|..+++|++|++++|.++.  ..+..+..+ +|++|++++|++..
T Consensus       114 l~-~l~~~~~----~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          114 LV-EIPPNLP----SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             CC-SCCSSCC----TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CC-ccCcccc----ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            87 5555443    48999999999998 6666669999999999999999863  567778877 99999999999998


Q ss_pred             ccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceee
Q 043523          454 NFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV  533 (650)
Q Consensus       454 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~  533 (650)
                       .|..+  .++|++|++++|.++...  +..+..+++|++|++++|.+.+..+.                          
T Consensus       187 -l~~~~--~~~L~~L~l~~n~i~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~--------------------------  235 (332)
T 2ft3_A          187 -IPKDL--PETLNELHLDHNKIQAIE--LEDLLRYSKLYRLGLGHNQIRMIENG--------------------------  235 (332)
T ss_dssp             -CCSSS--CSSCSCCBCCSSCCCCCC--TTSSTTCTTCSCCBCCSSCCCCCCTT--------------------------
T ss_pred             -cCccc--cCCCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCCcCChh--------------------------
Confidence             44433  389999999999998664  56788999999999999988643321                          


Q ss_pred             ccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCC------
Q 043523          534 ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNL------  607 (650)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l------  607 (650)
                                           .+..++.|++|++++|.+. ..+..+..+++|++|++++|++++..+..|...      
T Consensus       236 ---------------------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~  293 (332)
T 2ft3_A          236 ---------------------SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKR  293 (332)
T ss_dssp             ---------------------GGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSS
T ss_pred             ---------------------HhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccccc
Confidence                                 1245789999999999998 455568899999999999999998777777653      


Q ss_pred             CCCCeeeCCCCcCC--ccCCccccCCCCCCeEEccCCc
Q 043523          608 KQIESLDLSMNNLS--GKIPAQLASLNFLSVLNLSYNN  643 (650)
Q Consensus       608 ~~L~~L~l~~n~i~--~~~~~~l~~l~~L~~L~l~~n~  643 (650)
                      ++|+.|++++|.+.  ...|..|..+++|+.+++++|+
T Consensus       294 ~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            67999999999998  6788899999999999999985

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=4.2e-32  Score=283.47  Aligned_cols=172  Identities=15%  Similarity=0.105  Sum_probs=96.2

Q ss_pred             CCCCccEEEcCCCccccc----cchhcccCCCCCEEeCCCCccccccchhhhc-----CCCCCeEEccCcccceec--CC
Q 043523          413 RNCGLQILDLGGNQLQGV----VPKSLANCNMLQVLDLKNNHISDNFPCWLGN-----ASSLQVLVLQSNNFSGHI--SC  481 (650)
Q Consensus       413 ~l~~L~~L~ls~~~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----~~~L~~L~l~~n~~~~~~--~~  481 (650)
                      .+++|++|++++|.++..    .+..+..+++|++|++++|++.+..+..+..     .++|++|++++|.++...  .+
T Consensus       254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  333 (461)
T 1z7x_W          254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  333 (461)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence            455666777777666643    3455566777777777777776544443332     257777777777765331  01


Q ss_pred             CCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCc
Q 043523          482 PRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNI  561 (650)
Q Consensus       482 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (650)
                      +..+..+++|++|++++|.+.+.........                                          .....+.
T Consensus       334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~------------------------------------------l~~~~~~  371 (461)
T 1z7x_W          334 SSVLAQNRFLLELQISNNRLEDAGVRELCQG------------------------------------------LGQPGSV  371 (461)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHH------------------------------------------HTSTTCC
T ss_pred             HHHHhhCCCccEEEccCCccccccHHHHHHH------------------------------------------HcCCCCc
Confidence            2334455667777777776543211111000                                          0012456


Q ss_pred             ccEEeCCCCcccc----CCCccccCCcCCCEEeCccccCcccCCcCcc-----CCCCCCeeeCCCCcCCccCCc
Q 043523          562 FTSIDFSSNNFEG----PIPEEMGRFKSLYALNMSHNALTGSIPSSFG-----NLKQIESLDLSMNNLSGKIPA  626 (650)
Q Consensus       562 l~~L~l~~~~~~~----~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-----~l~~L~~L~l~~n~i~~~~~~  626 (650)
                      |++|++++|.+++    ..+..+..+++|++|++++|++++.....+.     ....|+.|++.++.+....++
T Consensus       372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~  445 (461)
T 1z7x_W          372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED  445 (461)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred             eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence            6777777777664    4455566677777777777777743222211     234567777766666544333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=5.3e-31  Score=275.16  Aligned_cols=244  Identities=21%  Similarity=0.163  Sum_probs=169.8

Q ss_pred             cccCCCcccEEECcCccccccCChhhhh---ccccCccEEEccCccCCCc----CCCcccCCCCCccEEEcCCCcccccc
Q 043523          359 SVCKGIYFQVLDLSNNNLSGTIPACLIA---QSETTLGVLNLGRNNLNGT----LSDTIFPRNCGLQILDLGGNQLQGVV  431 (650)
Q Consensus       359 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~ls~~~i~~~~  431 (650)
                      .+..+++|+.|++++|.+.+..+..+..   ...++|++|++++|.+.+.    ++. .+..+++|++|++++|.+.+..
T Consensus       165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~  243 (461)
T 1z7x_W          165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG-IVASKASLRELALGSNKLGDVG  243 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH-HHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH-HHHhCCCccEEeccCCcCChHH
Confidence            4445566677777777665433333222   1123788888888877642    222 3567889999999999887553


Q ss_pred             c-----hhcccCCCCCEEeCCCCccccc----cchhhhcCCCCCeEEccCcccceecC--CCCC-CCCCCCCCeeeCCCc
Q 043523          432 P-----KSLANCNMLQVLDLKNNHISDN----FPCWLGNASSLQVLVLQSNNFSGHIS--CPRN-NVSWPLLQIVDLASN  499 (650)
Q Consensus       432 ~-----~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~-~~~~~~L~~L~l~~n  499 (650)
                      .     ..+..+++|++|++++|.+++.    .+..+..+++|++|++++|.+.....  +... ....++|++|++++|
T Consensus       244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence            2     2233589999999999999874    45667779999999999999864320  0111 123479999999999


Q ss_pred             ccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCcc
Q 043523          500 KFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEE  579 (650)
Q Consensus       500 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~  579 (650)
                      .+++.....+..                                           .+..++.|++|++++|.+.+..+..
T Consensus       324 ~l~~~~~~~l~~-------------------------------------------~l~~~~~L~~L~Ls~n~i~~~~~~~  360 (461)
T 1z7x_W          324 SFTAACCSHFSS-------------------------------------------VLAQNRFLLELQISNNRLEDAGVRE  360 (461)
T ss_dssp             CCBGGGHHHHHH-------------------------------------------HHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred             CCchHHHHHHHH-------------------------------------------HHhhCCCccEEEccCCccccccHHH
Confidence            887543222211                                           1124688999999999988665544


Q ss_pred             ccC-----CcCCCEEeCccccCcc----cCCcCccCCCCCCeeeCCCCcCCccCCcccc-----CCCCCCeEEccCCcCc
Q 043523          580 MGR-----FKSLYALNMSHNALTG----SIPSSFGNLKQIESLDLSMNNLSGKIPAQLA-----SLNFLSVLNLSYNNLV  645 (650)
Q Consensus       580 ~~~-----l~~L~~L~ls~n~i~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~-----~l~~L~~L~l~~n~~~  645 (650)
                      +..     .++|++|++++|++++    .++.++..+++|++|++++|+++......+.     ....|+.|++.++...
T Consensus       361 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence            443     6799999999999996    6778888899999999999999865333332     2456888888887765


Q ss_pred             c
Q 043523          646 G  646 (650)
Q Consensus       646 ~  646 (650)
                      .
T Consensus       441 ~  441 (461)
T 1z7x_W          441 E  441 (461)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=3.8e-28  Score=260.58  Aligned_cols=307  Identities=18%  Similarity=0.143  Sum_probs=182.2

Q ss_pred             CCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEE
Q 043523           20 VPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMD   99 (650)
Q Consensus        20 ~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~   99 (650)
                      +++++.++++++.+.......|..+++|++|+|++|.+.+..+..|+.+++|++|++++|.+++..|..|+++++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            45566666666666444444455566666666666666655555666666666666666666655555666666666666


Q ss_pred             ccCCcccccCCcc-ccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCC
Q 043523          100 FSSNHFSGHIPSL-HKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFE  178 (650)
Q Consensus       100 l~~~~i~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  178 (650)
                      +++|.+...++.+ ..+++|++|++++|.+++..+.. +.++++|+.|++++|.+...   .+..+++|+.+++++|.+.
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-hhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence            6666666555543 45566666666666665433333 56666666666666666543   2344566666666666554


Q ss_pred             CCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCc
Q 043523          179 NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQ  258 (650)
Q Consensus       179 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~  258 (650)
                      ..      .....|+.|++++|.+. .++...   .++|+.|++++|.++..          +.+..+++|+.|++++|.
T Consensus       206 ~l------~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~~----------~~l~~l~~L~~L~Ls~N~  265 (597)
T 3oja_B          206 TL------AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTDT----------AWLLNYPGLVEVDLSYNE  265 (597)
T ss_dssp             EE------ECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSSC
T ss_pred             cc------cCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCCC----------hhhccCCCCCEEECCCCc
Confidence            21      12345666666666655 333222   25666666666665521          225556666666666666


Q ss_pred             CCCCCChhHHhhcCcccceeeeccccccCCcCccc-CCcccEEEeccCcCCCCCCC--CCCCccEEecCCCcCCCCchhh
Q 043523          259 IPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYS-ISSIRLLDLHSNQLRGNIPH--MSTNTSYVDYSNNHFTFIPADI  335 (650)
Q Consensus       259 i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~-l~~L~~L~l~~~~l~~~~~~--~~~~L~~L~l~~~~i~~~~~~~  335 (650)
                      +.+..|.++...  ++|+.|++++|.+..++.... +++|+.|++++|.+......  .+++|++|++++|+++.++   
T Consensus       266 l~~~~~~~~~~l--~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~---  340 (597)
T 3oja_B          266 LEKIMYHPFVKM--QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---  340 (597)
T ss_dssp             CCEEESGGGTTC--SSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---
T ss_pred             cCCCCHHHhcCc--cCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC---
Confidence            665555555433  346666666666666654443 66777777777766643221  3466777777777776654   


Q ss_pred             hhccCCccEEEccCCccccc
Q 043523          336 GNFMSETEYFFAANNSLVGV  355 (650)
Q Consensus       336 ~~~~~~l~~l~l~~~~~~~~  355 (650)
                      ...++.|+.+++++|.+.+.
T Consensus       341 ~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          341 LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             CCTTCCCSEEECCSSCEEHH
T ss_pred             hhhcCCCCEEEeeCCCCCCh
Confidence            22366777777777776643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=4.9e-29  Score=244.56  Aligned_cols=249  Identities=27%  Similarity=0.414  Sum_probs=162.4

Q ss_pred             CCccEEEccCCcccc--cccccccCCCcccEEECcC-ccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCC
Q 043523          340 SETEYFFAANNSLVG--VIPESVCKGIYFQVLDLSN-NNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCG  416 (650)
Q Consensus       340 ~~l~~l~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~  416 (650)
                      ..++.++++++.+.+  .+|..+..+++|+.|++++ |.+.+.+|..+....  +|++|++++|.+.+.++.. |..+++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~~p~~-~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT--QLHYLYITHTNVSGAIPDF-LSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT--TCSEEEEEEECCEEECCGG-GGGCTT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC--CCCEEECcCCeeCCcCCHH-HhCCCC
Confidence            345555666665555  5566666666666666663 556555665554433  6666666666665444443 666666


Q ss_pred             ccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCC-CCCeEEccCcccceecCCCCCCCCCCCCCeee
Q 043523          417 LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNAS-SLQVLVLQSNNFSGHISCPRNNVSWPLLQIVD  495 (650)
Q Consensus       417 L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~  495 (650)
                      |++|++++|.+.+..|..+..+++|++|++++|++.+..|..+..++ +|++|++++|++++..  +..+..++ |++|+
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~--~~~~~~l~-L~~L~  203 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI--PPTFANLN-LAFVD  203 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC--CGGGGGCC-CSEEE
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC--ChHHhCCc-ccEEE
Confidence            77777777776666666666677777777777776655666666665 6777777777666443  44555554 67777


Q ss_pred             CCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccC
Q 043523          496 LASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGP  575 (650)
Q Consensus       496 l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~  575 (650)
                      +++|.+.+..+                                               ..+..++.|+.|++++|.+.+.
T Consensus       204 Ls~N~l~~~~~-----------------------------------------------~~~~~l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          204 LSRNMLEGDAS-----------------------------------------------VLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             CCSSEEEECCG-----------------------------------------------GGCCTTSCCSEEECCSSEECCB
T ss_pred             CcCCcccCcCC-----------------------------------------------HHHhcCCCCCEEECCCCceeee
Confidence            77766543221                                               1123456677777777777654


Q ss_pred             CCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCc
Q 043523          576 IPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN  643 (650)
Q Consensus       576 ~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~  643 (650)
                      .+. +..+++|++|++++|++++..|.++..+++|++|++++|++++.+|.. .++++|+.+++++|+
T Consensus       237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            443 666778888888888887777777777888888888888887766665 777778888888887

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=3e-27  Score=234.51  Aligned_cols=269  Identities=20%  Similarity=0.210  Sum_probs=232.6

Q ss_pred             CCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEE
Q 043523          316 TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVL  395 (650)
Q Consensus       316 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L  395 (650)
                      .+++.++++++.++.+|..+   .+.++.+++++|.+.+..+..+..+++|+.|++++|.+.+..|..+....  +|++|
T Consensus        31 c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L  105 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV--KLERL  105 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT--TCCEE
T ss_pred             CCCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC--CCCEE
Confidence            47899999999999998765   47899999999999988888899999999999999999877677776544  99999


Q ss_pred             EccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCcccc--ccchhhhcCCCCCeEEccCc
Q 043523          396 NLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD--NFPCWLGNASSLQVLVLQSN  473 (650)
Q Consensus       396 ~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~L~~L~l~~n  473 (650)
                      ++++|.+. .++...+   ++|++|++++|.+.+..+..+..+++|++|++++|++..  ..+..+.++++|++|++++|
T Consensus       106 ~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  181 (330)
T 1xku_A          106 YLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT  181 (330)
T ss_dssp             ECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred             ECCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence            99999988 6666544   689999999999998888889999999999999999974  56778999999999999999


Q ss_pred             ccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchh
Q 043523          474 NFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVET  553 (650)
Q Consensus       474 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  553 (650)
                      .++..   +..+  .++|++|++++|.+....+.                                              
T Consensus       182 ~l~~l---~~~~--~~~L~~L~l~~n~l~~~~~~----------------------------------------------  210 (330)
T 1xku_A          182 NITTI---PQGL--PPSLTELHLDGNKITKVDAA----------------------------------------------  210 (330)
T ss_dssp             CCCSC---CSSC--CTTCSEEECTTSCCCEECTG----------------------------------------------
T ss_pred             ccccC---Cccc--cccCCEEECCCCcCCccCHH----------------------------------------------
Confidence            98754   3322  28999999999987643222                                              


Q ss_pred             hcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCC--
Q 043523          554 MLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL--  631 (650)
Q Consensus       554 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l--  631 (650)
                       .+..++.|++|++++|.+.+..+..+..+++|++|++++|+++ .+|.++..+++|++|++++|.++++.+..|...  
T Consensus       211 -~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~  288 (330)
T 1xku_A          211 -SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY  288 (330)
T ss_dssp             -GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred             -HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence             2246788999999999999888888999999999999999999 788889999999999999999999888877543  


Q ss_pred             ----CCCCeEEccCCcCcc
Q 043523          632 ----NFLSVLNLSYNNLVG  646 (650)
Q Consensus       632 ----~~L~~L~l~~n~~~~  646 (650)
                          +.++.|++++|++..
T Consensus       289 ~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          289 NTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             CTTSCCCSEEECCSSSSCG
T ss_pred             ccccccccceEeecCcccc
Confidence                789999999999863

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=3.3e-28  Score=238.66  Aligned_cols=233  Identities=29%  Similarity=0.477  Sum_probs=208.3

Q ss_pred             CcccEEECcCccccc--cCChhhhhccccCccEEEccC-ccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCC
Q 043523          364 IYFQVLDLSNNNLSG--TIPACLIAQSETTLGVLNLGR-NNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNM  440 (650)
Q Consensus       364 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~  440 (650)
                      .+++.|++++|.+.+  .+|..+....  +|++|++++ |.+.+.++.. |..+++|++|++++|.+++..|..+..+++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~--~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLP--YLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCT--TCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCC--CCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence            579999999999998  7888777654  999999995 8888777766 899999999999999999889999999999


Q ss_pred             CCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCC-CCCeeeCCCcccccccChHHHHhHHhhHhh
Q 043523          441 LQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWP-LLQIVDLASNKFSGRLSQKWLLTMEEMMVA  519 (650)
Q Consensus       441 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~  519 (650)
                      |++|++++|.+.+..|..+..+++|++|++++|++++..  +..+..++ +|++|++++|.+.+..+...          
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~~L~~L~L~~N~l~~~~~~~~----------  194 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTGKIPPTF----------  194 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGCCCTTCCEEECCSSEEEEECCGGG----------
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC--CHHHhhhhhcCcEEECcCCeeeccCChHH----------
Confidence            999999999999888999999999999999999998655  77788887 99999999999875544322          


Q ss_pred             hcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCccc
Q 043523          520 ETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGS  599 (650)
Q Consensus       520 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~  599 (650)
                                                           ...+ |++|++++|.+.+..+..+..+++|+.|++++|++++.
T Consensus       195 -------------------------------------~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          195 -------------------------------------ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             -------------------------------------GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             -------------------------------------hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence                                                 1233 89999999999999999999999999999999999966


Q ss_pred             CCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCcccCCC
Q 043523          600 IPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT  650 (650)
Q Consensus       600 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~  650 (650)
                      .+. +..+++|++|++++|.+++..|..+..+++|+.|++++|+++|.+|+
T Consensus       237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            655 78899999999999999999999999999999999999999999995

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=3.3e-27  Score=234.33  Aligned_cols=267  Identities=16%  Similarity=0.205  Sum_probs=229.9

Q ss_pred             CCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEE
Q 043523          316 TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVL  395 (650)
Q Consensus       316 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L  395 (650)
                      ..++.++++++.++.+|..+   .+.++.+++++|.+.+..+..+..+++|+.|++++|.+.+..+..+....  +|++|
T Consensus        33 c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L  107 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR--KLQKL  107 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT--TCCEE
T ss_pred             ccCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC--CCCEE
Confidence            46899999999999998876   47899999999999988888999999999999999999877677665544  99999


Q ss_pred             EccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCcccc--ccchhhhcCCCCCeEEccCc
Q 043523          396 NLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD--NFPCWLGNASSLQVLVLQSN  473 (650)
Q Consensus       396 ~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~L~~L~l~~n  473 (650)
                      ++++|.+. .++...+   ++|++|++++|++.+..+..|..+++|++|++++|++..  ..+..+..+ +|++|++++|
T Consensus       108 ~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n  182 (332)
T 2ft3_A          108 YISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA  182 (332)
T ss_dssp             ECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred             ECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence            99999998 6666544   789999999999997777889999999999999999964  566777777 9999999999


Q ss_pred             ccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchh
Q 043523          474 NFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVET  553 (650)
Q Consensus       474 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  553 (650)
                      .++..   +..+  .++|++|++++|.+....+                                               
T Consensus       183 ~l~~l---~~~~--~~~L~~L~l~~n~i~~~~~-----------------------------------------------  210 (332)
T 2ft3_A          183 KLTGI---PKDL--PETLNELHLDHNKIQAIEL-----------------------------------------------  210 (332)
T ss_dssp             BCSSC---CSSS--CSSCSCCBCCSSCCCCCCT-----------------------------------------------
T ss_pred             CCCcc---Cccc--cCCCCEEECCCCcCCccCH-----------------------------------------------
Confidence            98753   3332  2799999999998764322                                               


Q ss_pred             hcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCC--
Q 043523          554 MLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL--  631 (650)
Q Consensus       554 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l--  631 (650)
                      ..+..++.|++|++++|.+.+..+..+..+++|++|++++|+++ .+|.++..+++|++|++++|.++...+..|...  
T Consensus       211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  289 (332)
T 2ft3_A          211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF  289 (332)
T ss_dssp             TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred             HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccc
Confidence            12346788999999999999888888999999999999999999 788889999999999999999999888877654  


Q ss_pred             ----CCCCeEEccCCcCc
Q 043523          632 ----NFLSVLNLSYNNLV  645 (650)
Q Consensus       632 ----~~L~~L~l~~n~~~  645 (650)
                          ++|+.|++++|++.
T Consensus       290 ~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          290 GVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CSSSCCBSEEECCSSSSC
T ss_pred             ccccccccceEeecCccc
Confidence                67999999999987

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1e-27  Score=240.20  Aligned_cols=275  Identities=16%  Similarity=0.178  Sum_probs=181.9

Q ss_pred             EEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccC
Q 043523          320 YVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGR  399 (650)
Q Consensus       320 ~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  399 (650)
                      ..+.+++.++.+|..+   .+.++++++++|.+.+..+..+..+++|+.|++++|.+.+..+..+....  +|++|++++
T Consensus        35 ~c~~~~~~l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~  109 (353)
T 2z80_A           35 ICKGSSGSLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG--SLEHLDLSY  109 (353)
T ss_dssp             EEECCSTTCSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEECCS
T ss_pred             EeeCCCCCcccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC--CCCEEECCC
Confidence            3555566666666544   34666666666666665555666667777777777766654444444332  677777777


Q ss_pred             ccCCCcCCCcccCCCCCccEEEcCCCccccccc-hhcccCCCCCEEeCCCC-ccccccchhhhcCCCCCeEEccCcccce
Q 043523          400 NNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVP-KSLANCNMLQVLDLKNN-HISDNFPCWLGNASSLQVLVLQSNNFSG  477 (650)
Q Consensus       400 ~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~l~~n~~~~  477 (650)
                      |.+. .++...|..+++|++|++++|++++... ..+..+++|++|++++| .+....+..+.++++|++|++++|.+.+
T Consensus       110 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             SCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            7766 4444446677777777777777764433 46677777777777777 4666556667777777777777777766


Q ss_pred             ecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhccc
Q 043523          478 HISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLK  557 (650)
Q Consensus       478 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (650)
                      ..  +..+..+++|++|++++|.+... +.                                              ....
T Consensus       189 ~~--~~~l~~l~~L~~L~l~~n~l~~~-~~----------------------------------------------~~~~  219 (353)
T 2z80_A          189 YE--PKSLKSIQNVSHLILHMKQHILL-LE----------------------------------------------IFVD  219 (353)
T ss_dssp             EC--TTTTTTCSEEEEEEEECSCSTTH-HH----------------------------------------------HHHH
T ss_pred             cC--HHHHhccccCCeecCCCCccccc-hh----------------------------------------------hhhh
Confidence            54  55666777777777777765311 11                                              1112


Q ss_pred             CCCcccEEeCCCCccccCCCccc---cCCcCCCEEeCccccCcc----cCCcCccCCCCCCeeeCCCCcCCccCCccccC
Q 043523          558 VPNIFTSIDFSSNNFEGPIPEEM---GRFKSLYALNMSHNALTG----SIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS  630 (650)
Q Consensus       558 ~~~~l~~L~l~~~~~~~~~~~~~---~~l~~L~~L~ls~n~i~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~  630 (650)
                      .+++|+.|++++|.+++.....+   .....++.++++++.+++    .+|.+++.+++|++|++++|+++.+++..|.+
T Consensus       220 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~  299 (353)
T 2z80_A          220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDR  299 (353)
T ss_dssp             HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhc
Confidence            35677778888887776544333   235667777787777764    35667788888888888888888666666788


Q ss_pred             CCCCCeEEccCCcCcccCC
Q 043523          631 LNFLSVLNLSYNNLVGKIP  649 (650)
Q Consensus       631 l~~L~~L~l~~n~~~~~~p  649 (650)
                      +++|+.|++++|++.+..|
T Consensus       300 l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          300 LTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CTTCCEEECCSSCBCCCHH
T ss_pred             CCCCCEEEeeCCCccCcCC
Confidence            8888888888888877544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=2.3e-26  Score=225.67  Aligned_cols=248  Identities=22%  Similarity=0.226  Sum_probs=147.7

Q ss_pred             cEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccC--ChhhhhccccCccEEE
Q 043523          319 SYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTI--PACLIAQSETTLGVLN  396 (650)
Q Consensus       319 ~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~  396 (650)
                      +.++++++.++.+|..+   .++++++++++|.+....+..+..+++|+.|++++|.+....  +..+..  .++|++|+
T Consensus        10 ~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG--TTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS--CSCCCEEE
T ss_pred             CEEEcCCCCcccCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc--ccccCEEE
Confidence            45566666666666544   356666777766666544444566777777777777665221  233322  23666666


Q ss_pred             ccCccCCCcCCCcccCCCCCccEEEcCCCccccccc-hhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCccc
Q 043523          397 LGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVP-KSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNF  475 (650)
Q Consensus       397 l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~  475 (650)
                      +++|.+. .++.. +..+++|++|++++|++++..+ ..+..+++|++|++++|++....+..+..+++|++|++++|.+
T Consensus        85 Ls~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  162 (306)
T 2z66_A           85 LSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF  162 (306)
T ss_dssp             CCSCSEE-EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred             CCCCccc-cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence            6666665 33333 5667777777777777765443 4566777777777777777766666666777777777777776


Q ss_pred             ce-ecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhh
Q 043523          476 SG-HISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETM  554 (650)
Q Consensus       476 ~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  554 (650)
                      .+ ..  +..+..+++|++|++++|.++...+.                                               
T Consensus       163 ~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~-----------------------------------------------  193 (306)
T 2z66_A          163 QENFL--PDIFTELRNLTFLDLSQCQLEQLSPT-----------------------------------------------  193 (306)
T ss_dssp             GGGEE--CSCCTTCTTCCEEECTTSCCCEECTT-----------------------------------------------
T ss_pred             ccccc--hhHHhhCcCCCEEECCCCCcCCcCHH-----------------------------------------------
Confidence            54 22  44555666666666666655422111                                               


Q ss_pred             cccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCC-CCCeeeCCCCcCCc
Q 043523          555 LLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLK-QIESLDLSMNNLSG  622 (650)
Q Consensus       555 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~-~L~~L~l~~n~i~~  622 (650)
                      .+..++.|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..++ +|++|++++|.++.
T Consensus       194 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            112345555555555555555555555566666666666666655555555553 56666666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=5.4e-26  Score=235.60  Aligned_cols=248  Identities=21%  Similarity=0.177  Sum_probs=165.5

Q ss_pred             ccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEc
Q 043523          318 TSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNL  397 (650)
Q Consensus       318 L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  397 (650)
                      ...++.++..++.+|..+   .+.++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.               
T Consensus        56 ~~~v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~---------------  117 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG---------------  117 (452)
T ss_dssp             SCEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT---------------
T ss_pred             CcEEEECCCCcCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh---------------
Confidence            456677777777777654   35667777777777666666666666666666666665533332               


Q ss_pred             cCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccce
Q 043523          398 GRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSG  477 (650)
Q Consensus       398 ~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~  477 (650)
                                  .|..+++|++|++++|+++...+..|..+++|++|+|++|++..+.+..|..+++|++|++++|...+
T Consensus       118 ------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~  185 (452)
T 3zyi_A          118 ------------AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE  185 (452)
T ss_dssp             ------------TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC
T ss_pred             ------------hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc
Confidence                        35555555566665555554444555555666666666666555444455556666666666533222


Q ss_pred             ecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhccc
Q 043523          478 HISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLK  557 (650)
Q Consensus       478 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (650)
                      ... ...+.++++|++|++++|.+....                                                 .+.
T Consensus       186 ~i~-~~~~~~l~~L~~L~L~~n~l~~~~-------------------------------------------------~~~  215 (452)
T 3zyi_A          186 YIS-EGAFEGLFNLKYLNLGMCNIKDMP-------------------------------------------------NLT  215 (452)
T ss_dssp             EEC-TTTTTTCTTCCEEECTTSCCSSCC-------------------------------------------------CCT
T ss_pred             ccC-hhhccCCCCCCEEECCCCcccccc-------------------------------------------------ccc
Confidence            211 334555666666666666543210                                                 012


Q ss_pred             CCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeE
Q 043523          558 VPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVL  637 (650)
Q Consensus       558 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  637 (650)
                      .+++|+.|++++|.+.++.+..+..+++|+.|++++|++++..+.+|..+++|++|++++|++++.++..|..+++|+.|
T Consensus       216 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  295 (452)
T 3zyi_A          216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL  295 (452)
T ss_dssp             TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEE
T ss_pred             ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEE
Confidence            45677778888888877778888888999999999999988888888889999999999999988888888889999999


Q ss_pred             EccCCcCc
Q 043523          638 NLSYNNLV  645 (650)
Q Consensus       638 ~l~~n~~~  645 (650)
                      ++++|++.
T Consensus       296 ~L~~Np~~  303 (452)
T 3zyi_A          296 HLHHNPWN  303 (452)
T ss_dssp             ECCSSCEE
T ss_pred             EccCCCcC
Confidence            99998864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=5.5e-26  Score=234.67  Aligned_cols=248  Identities=21%  Similarity=0.170  Sum_probs=158.3

Q ss_pred             ccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEc
Q 043523          318 TSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNL  397 (650)
Q Consensus       318 L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  397 (650)
                      ...++.++..++.+|..+   .+.++.+++++|.+....+..+..+++|+.|++++|.+....+..              
T Consensus        45 ~~~v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~--------------  107 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA--------------  107 (440)
T ss_dssp             SCEEECCSCCCSSCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG--------------
T ss_pred             CCEEEeCCCCcCcCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh--------------
Confidence            456777777788777765   367777777777777776677777777777777777665333333              


Q ss_pred             cCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccce
Q 043523          398 GRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSG  477 (650)
Q Consensus       398 ~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~  477 (650)
                                   |..+++|++|++++|+++...+..|..+++|++|+|++|++..+.+..|..+++|++|++++|....
T Consensus       108 -------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~  174 (440)
T 3zyj_A          108 -------------FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS  174 (440)
T ss_dssp             -------------GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC
T ss_pred             -------------ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcc
Confidence                         4444445555555554443333444455555555555555544444444455555555555433222


Q ss_pred             ecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhccc
Q 043523          478 HISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLK  557 (650)
Q Consensus       478 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (650)
                      ... ...+.++++|++|++++|.++...                                                 .+.
T Consensus       175 ~i~-~~~~~~l~~L~~L~L~~n~l~~~~-------------------------------------------------~~~  204 (440)
T 3zyj_A          175 YIS-EGAFEGLSNLRYLNLAMCNLREIP-------------------------------------------------NLT  204 (440)
T ss_dssp             EEC-TTTTTTCSSCCEEECTTSCCSSCC-------------------------------------------------CCT
T ss_pred             eeC-cchhhcccccCeecCCCCcCcccc-------------------------------------------------ccC
Confidence            110 233444555555555555443100                                                 012


Q ss_pred             CCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeE
Q 043523          558 VPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVL  637 (650)
Q Consensus       558 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  637 (650)
                      .+++|++|++++|.+.++.+..+..+++|+.|++++|++++..+.+|..+++|++|++++|+++..++..|..+++|+.|
T Consensus       205 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  284 (440)
T 3zyj_A          205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI  284 (440)
T ss_dssp             TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE
T ss_pred             CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE
Confidence            45666777777777777777788888888888888888888888888888888888888888888888888888888888


Q ss_pred             EccCCcCc
Q 043523          638 NLSYNNLV  645 (650)
Q Consensus       638 ~l~~n~~~  645 (650)
                      ++++|++.
T Consensus       285 ~L~~Np~~  292 (440)
T 3zyj_A          285 HLHHNPWN  292 (440)
T ss_dssp             ECCSSCEE
T ss_pred             EcCCCCcc
Confidence            88888764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=2.8e-26  Score=224.99  Aligned_cols=282  Identities=18%  Similarity=0.223  Sum_probs=219.6

Q ss_pred             EEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCccccc--ccccccCCCcccEEECcCccc
Q 043523          299 LLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGV--IPESVCKGIYFQVLDLSNNNL  376 (650)
Q Consensus       299 ~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~  376 (650)
                      .++.+++.+.......++++++|++++|+++.++...+..+++|+.+++++|.+...  .+..+..+++|+.|++++|.+
T Consensus        11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i   90 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV   90 (306)
T ss_dssp             EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE
T ss_pred             EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc
Confidence            455555555554444556778888888888888877777788899999998887743  356677788999999999988


Q ss_pred             cccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCcccc-cc
Q 043523          377 SGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD-NF  455 (650)
Q Consensus       377 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~  455 (650)
                      . .++..+..  .++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..
T Consensus        91 ~-~l~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  167 (306)
T 2z66_A           91 I-TMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  167 (306)
T ss_dssp             E-EEEEEEET--CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             c-cChhhcCC--CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence            7 34444433  34899999999988854443568899999999999999988888889999999999999999986 57


Q ss_pred             chhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeecc
Q 043523          456 PCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVIS  535 (650)
Q Consensus       456 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~  535 (650)
                      +..+..+++|++|++++|.+++..  +..+..+++|++|++++|.++...+.                            
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~----------------------------  217 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFFSLDTF----------------------------  217 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCSBCCSG----------------------------
T ss_pred             hhHHhhCcCCCEEECCCCCcCCcC--HHHhcCCCCCCEEECCCCccCccChh----------------------------
Confidence            888899999999999999998765  66788899999999999987643221                            


Q ss_pred             CCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCc-CCCEEeCccccCcccCC-cC-ccCCCCCCe
Q 043523          536 SNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFK-SLYALNMSHNALTGSIP-SS-FGNLKQIES  612 (650)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~-~L~~L~ls~n~i~~~~~-~~-~~~l~~L~~  612 (650)
                                         .+..+++|++|++++|.+.+..+..+..++ +|++|++++|+++..-+ .+ ..-+...+.
T Consensus       218 -------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~  278 (306)
T 2z66_A          218 -------------------PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ  278 (306)
T ss_dssp             -------------------GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGG
T ss_pred             -------------------hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhh
Confidence                               224678999999999999998888888884 99999999999985321 11 122345566


Q ss_pred             eeCCCCcCCccCCccccCCC
Q 043523          613 LDLSMNNLSGKIPAQLASLN  632 (650)
Q Consensus       613 L~l~~n~i~~~~~~~l~~l~  632 (650)
                      +....+.+....|..+++.+
T Consensus       279 ~~~~~~~~~C~~p~~~~g~~  298 (306)
T 2z66_A          279 LLVEVERMECATPSDKQGMP  298 (306)
T ss_dssp             GBSCGGGCBEEESGGGTTCB
T ss_pred             hhccccccccCCchhhCCce
Confidence            67777888888888877654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.4e-25  Score=217.44  Aligned_cols=226  Identities=21%  Similarity=0.217  Sum_probs=178.7

Q ss_pred             cEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeC
Q 043523          367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDL  446 (650)
Q Consensus       367 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L  446 (650)
                      +.++.+++.+. .+|..+    .+++++|++++|.+. .++...|..+++|++|++++|.+++..+.+|..+++|++|++
T Consensus        14 ~~~~c~~~~l~-~ip~~~----~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   87 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI----PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL   87 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC----CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             eEEEcCcCCcc-cCCcCC----CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence            45666666655 344332    237888888888877 455555888888888888888888777888888888888888


Q ss_pred             CCCc-cccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCc
Q 043523          447 KNNH-ISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGS  525 (650)
Q Consensus       447 s~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~  525 (650)
                      ++|+ +....+..+..+++|++|++++|.++...  +..+.++++|++|++++|.+....+                   
T Consensus        88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~-------------------  146 (285)
T 1ozn_A           88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPD-------------------  146 (285)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCT-------------------
T ss_pred             CCCCCccccCHHHhcCCcCCCEEECCCCcCCEEC--HhHhhCCcCCCEEECCCCcccccCH-------------------
Confidence            8887 77766778888888888888888887554  5667788888888888887653221                   


Q ss_pred             ccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCcc
Q 043523          526 ELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFG  605 (650)
Q Consensus       526 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~  605 (650)
                                                  ..+..+++|++|++++|.+.++.+..+..+++|++|++++|++++..|.+|+
T Consensus       147 ----------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  198 (285)
T 1ozn_A          147 ----------------------------DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR  198 (285)
T ss_dssp             ----------------------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             ----------------------------hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHcc
Confidence                                        1224577888899999988877777888899999999999999988888999


Q ss_pred             CCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCccc
Q 043523          606 NLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGK  647 (650)
Q Consensus       606 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~  647 (650)
                      .+++|++|++++|.+++.++..+..+++|+.|++++|++...
T Consensus       199 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence            999999999999999988888899999999999999988753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=2.5e-26  Score=230.17  Aligned_cols=282  Identities=18%  Similarity=0.196  Sum_probs=195.3

Q ss_pred             CcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCc
Q 043523          295 SSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNN  374 (650)
Q Consensus       295 ~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  374 (650)
                      +.....+.+++.+.......++++++|++++|+++.++...+..+++|+.+++++|.+.+..+..+..+++|+.|++++|
T Consensus        31 ~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (353)
T 2z80_A           31 DRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN  110 (353)
T ss_dssp             CTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence            33344555555555544444566777777777777666655566788888888888887777777888888888888888


Q ss_pred             cccccCChhhhhccccCccEEEccCccCCCcCCC-cccCCCCCccEEEcCCC-ccccccchhcccCCCCCEEeCCCCccc
Q 043523          375 NLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSD-TIFPRNCGLQILDLGGN-QLQGVVPKSLANCNMLQVLDLKNNHIS  452 (650)
Q Consensus       375 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~ls~~-~i~~~~~~~~~~l~~L~~L~Ls~n~l~  452 (650)
                      .+.+..+..+...  ++|++|++++|.+. .++. ..|..+++|++|++++| .+....+..+..+++|++|++++|++.
T Consensus       111 ~l~~~~~~~~~~l--~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          111 YLSNLSSSWFKPL--SSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             CCSSCCHHHHTTC--TTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             cCCcCCHhHhCCC--ccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            8774333223333  37888888888877 4444 55778888888888888 466556677888888888888888888


Q ss_pred             cccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCccccccee
Q 043523          453 DNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRY  532 (650)
Q Consensus       453 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~  532 (650)
                      +..+..+..+++|++|++++|.+....  ...+..+++|++|++++|.+.+.......                      
T Consensus       188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~l~----------------------  243 (353)
T 2z80_A          188 SYEPKSLKSIQNVSHLILHMKQHILLL--EIFVDVTSSVECLELRDTDLDTFHFSELS----------------------  243 (353)
T ss_dssp             EECTTTTTTCSEEEEEEEECSCSTTHH--HHHHHHTTTEEEEEEESCBCTTCCCC-------------------------
T ss_pred             ccCHHHHhccccCCeecCCCCccccch--hhhhhhcccccEEECCCCccccccccccc----------------------
Confidence            777777888888888888888875332  22233467888888888877643221100                      


Q ss_pred             eccCCceeecceEEeeccchhhcccCCCcccEEeCCCCcccc----CCCccccCCcCCCEEeCccccCcccCCcCccCCC
Q 043523          533 VISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEG----PIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLK  608 (650)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~----~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~  608 (650)
                                            .......++.++++++.+.+    ..+..+..+++|++|++++|+++...+..|+.++
T Consensus       244 ----------------------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~  301 (353)
T 2z80_A          244 ----------------------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLT  301 (353)
T ss_dssp             -------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ----------------------cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCC
Confidence                                  00134455666777776654    2445678889999999999999954444468899


Q ss_pred             CCCeeeCCCCcCCccCC
Q 043523          609 QIESLDLSMNNLSGKIP  625 (650)
Q Consensus       609 ~L~~L~l~~n~i~~~~~  625 (650)
                      +|++|++++|.+.+..|
T Consensus       302 ~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          302 SLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TCCEEECCSSCBCCCHH
T ss_pred             CCCEEEeeCCCccCcCC
Confidence            99999999999887644

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1.2e-25  Score=218.01  Aligned_cols=269  Identities=18%  Similarity=0.166  Sum_probs=186.5

Q ss_pred             cEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEcc
Q 043523          319 SYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLG  398 (650)
Q Consensus       319 ~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  398 (650)
                      ..++.+++.++.+|..+   .++++.+++++|.+.+..+..+..+++|+.|++++|.+.+..+..+....  +|++|+++
T Consensus        14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA--LLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT--TCCEEECC
T ss_pred             eEEEcCcCCcccCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc--CCCEEeCC
Confidence            45667777777776644   56778888888877777767777788888888888877755555554433  78888888


Q ss_pred             CccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCccccee
Q 043523          399 RNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGH  478 (650)
Q Consensus       399 ~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  478 (650)
                      +|...+.++...|..+++|++|++++|++++..+..+..+++|++|++++|++....+..+..+++|++|++++|.++..
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence            88633355555578888888888888888877777788888888888888888876666777888888888888887765


Q ss_pred             cCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccC
Q 043523          479 ISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKV  558 (650)
Q Consensus       479 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (650)
                      .  ...+..+++|++|++++|.+....+.                                               .+..
T Consensus       169 ~--~~~~~~l~~L~~L~l~~n~l~~~~~~-----------------------------------------------~~~~  199 (285)
T 1ozn_A          169 P--ERAFRGLHSLDRLLLHQNRVAHVHPH-----------------------------------------------AFRD  199 (285)
T ss_dssp             C--TTTTTTCTTCCEEECCSSCCCEECTT-----------------------------------------------TTTT
T ss_pred             C--HHHhcCccccCEEECCCCcccccCHh-----------------------------------------------HccC
Confidence            4  44567778888888888876532221                                               1234


Q ss_pred             CCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccC--CCCCCe
Q 043523          559 PNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS--LNFLSV  636 (650)
Q Consensus       559 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~--l~~L~~  636 (650)
                      ++.|++|++++|.+.++.+..+..+++|++|++++|++...-+.. .-...++.+..+.+.+....|+.+++  +..++.
T Consensus       200 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~  278 (285)
T 1ozn_A          200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAA  278 (285)
T ss_dssp             CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCG
T ss_pred             cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCH
Confidence            667777888888777766667777888888888888776322210 11123445556667777667766654  455666


Q ss_pred             EEccCC
Q 043523          637 LNLSYN  642 (650)
Q Consensus       637 L~l~~n  642 (650)
                      .++.+|
T Consensus       279 ~~l~~C  284 (285)
T 1ozn_A          279 NDLQGC  284 (285)
T ss_dssp             GGSCCC
T ss_pred             HHhccC
Confidence            666665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=2.5e-27  Score=255.58  Aligned_cols=255  Identities=11%  Similarity=-0.011  Sum_probs=132.9

Q ss_pred             cCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCcc
Q 043523          339 MSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQ  418 (650)
Q Consensus       339 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  418 (650)
                      +++++.+.+.++ ....++..+..+++|+.|++++|.+.+.....+ ....++|++|+++ +.+.+......+..+++|+
T Consensus       269 ~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~-~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~  345 (592)
T 3ogk_B          269 PRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTL-IQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK  345 (592)
T ss_dssp             CTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHH-HTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred             cccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHH-HHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence            456666666553 222344455556666666666666443222111 1222366666666 3232222222234555666


Q ss_pred             EEEcCC-----------Cccccccchh-cccCCCCCEEeCCCCccccccchhhhc-CCCCCeEEcc----Cccccee---
Q 043523          419 ILDLGG-----------NQLQGVVPKS-LANCNMLQVLDLKNNHISDNFPCWLGN-ASSLQVLVLQ----SNNFSGH---  478 (650)
Q Consensus       419 ~L~ls~-----------~~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~~~L~~L~l~----~n~~~~~---  478 (650)
                      +|++++           +.+++..... ...+++|++|+++.+.+++..+..+.. +++|++|+++    .|.+++.   
T Consensus       346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~  425 (592)
T 3ogk_B          346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD  425 (592)
T ss_dssp             EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred             EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence            666662           2344322222 334666666666666665544444443 6666666664    3333321   


Q ss_pred             cCCCCCCCCCCCCCeeeCCCcc--cccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcc
Q 043523          479 ISCPRNNVSWPLLQIVDLASNK--FSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLL  556 (650)
Q Consensus       479 ~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (650)
                      .++...+.++++|++|++++|.  +++.    .+.                                          ...
T Consensus       426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~----~~~------------------------------------------~~~  459 (592)
T 3ogk_B          426 NGVRSLLIGCKKLRRFAFYLRQGGLTDL----GLS------------------------------------------YIG  459 (592)
T ss_dssp             HHHHHHHHHCTTCCEEEEECCGGGCCHH----HHH------------------------------------------HHH
T ss_pred             HHHHHHHHhCCCCCEEEEecCCCCccHH----HHH------------------------------------------HHH
Confidence            0001123345666666665432  1110    000                                          001


Q ss_pred             cCCCcccEEeCCCCccccCC-CccccCCcCCCEEeCccccCccc-CCcCccCCCCCCeeeCCCCcCCccCCccc-cCCCC
Q 043523          557 KVPNIFTSIDFSSNNFEGPI-PEEMGRFKSLYALNMSHNALTGS-IPSSFGNLKQIESLDLSMNNLSGKIPAQL-ASLNF  633 (650)
Q Consensus       557 ~~~~~l~~L~l~~~~~~~~~-~~~~~~l~~L~~L~ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l-~~l~~  633 (650)
                      ..+++|++|++++|.+++.. +..+..+++|++|+|++|.+++. .+..+..+++|++|++++|+++....+.+ +.++.
T Consensus       460 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~  539 (592)
T 3ogk_B          460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPY  539 (592)
T ss_dssp             HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTT
T ss_pred             HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCC
Confidence            23667788888888776532 33456678888888888887653 23333567788888888888776544434 35676


Q ss_pred             CCeEEccCC
Q 043523          634 LSVLNLSYN  642 (650)
Q Consensus       634 L~~L~l~~n  642 (650)
                      +....+..+
T Consensus       540 l~~~~~~~~  548 (592)
T 3ogk_B          540 WNIELIPSR  548 (592)
T ss_dssp             EEEEEECCC
T ss_pred             cEEEEecCc
Confidence            666655544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=5.3e-27  Score=230.26  Aligned_cols=254  Identities=20%  Similarity=0.228  Sum_probs=190.5

Q ss_pred             cCCccEEEccCCcccccccccccCCCcccEEECcCcccc-ccCChhhh-----hccccCccEEEccCccCCCcCCCccc-
Q 043523          339 MSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLS-GTIPACLI-----AQSETTLGVLNLGRNNLNGTLSDTIF-  411 (650)
Q Consensus       339 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~-  411 (650)
                      .++++.+++++|.+  .+|..+...  |+.|++++|.+. ..++....     ....++|++|++++|.+.+.++...| 
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            34455555555555  344433332  666777777663 23444332     11234889999999988877777644 


Q ss_pred             CCCCCccEEEcCCCccccccchhcccC-----CCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCC--
Q 043523          412 PRNCGLQILDLGGNQLQGVVPKSLANC-----NMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRN--  484 (650)
Q Consensus       412 ~~l~~L~~L~ls~~~i~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--  484 (650)
                      ..+++|++|++++|++++. |..+..+     ++|++|++++|++.+..+..+..+++|++|++++|++.+..+.+..  
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            8899999999999999866 7777776     8999999999999998878899999999999999997643211222  


Q ss_pred             CCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccE
Q 043523          485 NVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTS  564 (650)
Q Consensus       485 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  564 (650)
                      +..+++|++|++++|.+.....                                            +.......++.|++
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~--------------------------------------------~~~~~~~~l~~L~~  232 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSG--------------------------------------------VCSALAAARVQLQG  232 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHH--------------------------------------------HHHHHHHTTCCCSE
T ss_pred             hccCCCCCEEECCCCcCcchHH--------------------------------------------HHHHHHhcCCCCCE
Confidence            3788999999999998762110                                            01111235688999


Q ss_pred             EeCCCCccccCCC-ccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCc
Q 043523          565 IDFSSNNFEGPIP-EEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN  643 (650)
Q Consensus       565 L~l~~~~~~~~~~-~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~  643 (650)
                      |++++|.+.+..+ ..+..+++|++|++++|+++ .+|.++.  ++|++|++++|++++. |. +..+++|+.|++++|+
T Consensus       233 L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          233 LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             EECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCT
T ss_pred             EECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCC
Confidence            9999999988664 56667899999999999999 6777766  8999999999999977 54 9999999999999999


Q ss_pred             Ccc
Q 043523          644 LVG  646 (650)
Q Consensus       644 ~~~  646 (650)
                      +++
T Consensus       308 l~~  310 (312)
T 1wwl_A          308 FLD  310 (312)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            986

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=4.8e-27  Score=253.43  Aligned_cols=252  Identities=11%  Similarity=-0.030  Sum_probs=168.8

Q ss_pred             CccEEecCCCcCCCCchhhhhccCCccEEEccCCccccccc-ccccCCCcccEEECcCccccccCChhhhhccccCccEE
Q 043523          317 NTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIP-ESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVL  395 (650)
Q Consensus       317 ~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L  395 (650)
                      +++.++++.+....++.. +..+++|++|++++|.+.+... ..+..+++|+.|+++ +.+.+.....+.. ..++|++|
T Consensus       271 ~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~-~~~~L~~L  347 (592)
T 3ogk_B          271 KLCRLGLSYMGPNEMPIL-FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQ-YCKQLKRL  347 (592)
T ss_dssp             TCCEEEETTCCTTTGGGG-GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHH-HCTTCCEE
T ss_pred             cccccCccccchhHHHHH-HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHH-hCCCCCEE
Confidence            344444443332333332 3347788888888888655443 346789999999999 4444333332322 23489999


Q ss_pred             EccC-----------ccCCCcCCCcccCCCCCccEEEcCCCccccccchhccc-CCCCCEEeCC----CCccccc-----
Q 043523          396 NLGR-----------NNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLAN-CNMLQVLDLK----NNHISDN-----  454 (650)
Q Consensus       396 ~l~~-----------~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~-l~~L~~L~Ls----~n~l~~~-----  454 (650)
                      ++++           +.+++......+..+++|++|+++.+.+++..+..+.. +++|++|+++    .|.+++.     
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~  427 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG  427 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence            9994           34443323333456899999999888888777777765 9999999996    6677763     


Q ss_pred             cchhhhcCCCCCeEEccCcc--cceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCccccccee
Q 043523          455 FPCWLGNASSLQVLVLQSNN--FSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRY  532 (650)
Q Consensus       455 ~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~  532 (650)
                      .+..+.++++|++|+++.|.  ++... .......+++|++|++++|.+++.....                        
T Consensus       428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~------------------------  482 (592)
T 3ogk_B          428 VRSLLIGCKKLRRFAFYLRQGGLTDLG-LSYIGQYSPNVRWMLLGYVGESDEGLME------------------------  482 (592)
T ss_dssp             HHHHHHHCTTCCEEEEECCGGGCCHHH-HHHHHHSCTTCCEEEECSCCSSHHHHHH------------------------
T ss_pred             HHHHHHhCCCCCEEEEecCCCCccHHH-HHHHHHhCccceEeeccCCCCCHHHHHH------------------------
Confidence            34456789999999998655  44322 1222335789999999999875321111                        


Q ss_pred             eccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccC-CCccccCCcCCCEEeCccccCcccCCcCc-cCCCCC
Q 043523          533 VISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGP-IPEEMGRFKSLYALNMSHNALTGSIPSSF-GNLKQI  610 (650)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~~~~l~~L~~L~ls~n~i~~~~~~~~-~~l~~L  610 (650)
                                            ....+++|++|++++|.+++. .+..+..+++|++|++++|++++.....+ ..++.+
T Consensus       483 ----------------------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l  540 (592)
T 3ogk_B          483 ----------------------FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYW  540 (592)
T ss_dssp             ----------------------HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTE
T ss_pred             ----------------------HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCc
Confidence                                  113578999999999998644 23345678999999999999997654444 357777


Q ss_pred             CeeeCCCC
Q 043523          611 ESLDLSMN  618 (650)
Q Consensus       611 ~~L~l~~n  618 (650)
                      .+..+..+
T Consensus       541 ~~~~~~~~  548 (592)
T 3ogk_B          541 NIELIPSR  548 (592)
T ss_dssp             EEEEECCC
T ss_pred             EEEEecCc
Confidence            77766654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=5.9e-24  Score=225.23  Aligned_cols=267  Identities=21%  Similarity=0.213  Sum_probs=156.1

Q ss_pred             ccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCccc
Q 043523          274 NLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLV  353 (650)
Q Consensus       274 ~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~  353 (650)
                      +++.|++++|.++.+|.... ++|+.|++++|.+... +..+++|++|++++|+++.++.    .+++|++|++++|.+.
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~l-p~~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSL-PALPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLT  114 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCC-CCCCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCC
T ss_pred             CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCC-CCcCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCC
Confidence            35555555555555544332 5566666666655532 2245566666666666665554    3566666666666655


Q ss_pred             ccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccch
Q 043523          354 GVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPK  433 (650)
Q Consensus       354 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~  433 (650)
                      +...    .+++|+.|++++|.++. +|..     .++|++|++++|.+. .++.    ..++|+.|++++|.+++ +| 
T Consensus       115 ~l~~----~l~~L~~L~L~~N~l~~-lp~~-----l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~-l~-  177 (622)
T 3g06_A          115 HLPA----LPSGLCKLWIFGNQLTS-LPVL-----PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTS-LP-  177 (622)
T ss_dssp             CCCC----CCTTCCEEECCSSCCSC-CCCC-----CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CC-
T ss_pred             CCCC----CCCCcCEEECCCCCCCc-CCCC-----CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCCC-Cc-
Confidence            4322    34566666666666652 3322     136777777777665 3332    23467777777777763 33 


Q ss_pred             hcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhH
Q 043523          434 SLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTM  513 (650)
Q Consensus       434 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l  513 (650)
                        ..+++|+.|++++|++.++ +.   .+++|++|++++|.++...   .   .+++|+.|++++|.++.. +       
T Consensus       178 --~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~---~---~~~~L~~L~Ls~N~L~~l-p-------  237 (622)
T 3g06_A          178 --MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSLP---A---LPSGLKELIVSGNRLTSL-P-------  237 (622)
T ss_dssp             --CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCC---C---CCTTCCEEECCSSCCSCC-C-------
T ss_pred             --ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccccC---C---CCCCCCEEEccCCccCcC-C-------
Confidence              3456777777777777652 22   2467777777777765322   1   235677777777765420 0       


Q ss_pred             HhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCcc
Q 043523          514 EEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSH  593 (650)
Q Consensus       514 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~  593 (650)
                                                                 ..+++|+.|++++|.++.+..    .+++|+.|++++
T Consensus       238 -------------------------------------------~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~  270 (622)
T 3g06_A          238 -------------------------------------------VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYR  270 (622)
T ss_dssp             -------------------------------------------CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCS
T ss_pred             -------------------------------------------CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCC
Confidence                                                       134566667777776664333    456677777777


Q ss_pred             ccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCC
Q 043523          594 NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL  631 (650)
Q Consensus       594 n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l  631 (650)
                      |+++ .+|..+..+++|+.|++++|.+++..|..+..+
T Consensus       271 N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          271 NQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             SCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             CCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence            7777 556666777777777777777766666555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.4e-26  Score=227.79  Aligned_cols=80  Identities=18%  Similarity=0.215  Sum_probs=54.3

Q ss_pred             CCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCC-ccCCccccCCCCCCeE
Q 043523          559 PNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS-GKIPAQLASLNFLSVL  637 (650)
Q Consensus       559 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L  637 (650)
                      +++|++|++++|.+.++.+ .+..+++|+.|++++|+++ .+|..+..+++|++|++++|.+. +..+..+..+++|+.+
T Consensus       190 l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l  267 (317)
T 3o53_A          190 FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (317)
T ss_dssp             CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred             cccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence            4555566666666654433 3666777777777777777 45666777777777777777777 5566677777777777


Q ss_pred             Ecc
Q 043523          638 NLS  640 (650)
Q Consensus       638 ~l~  640 (650)
                      +++
T Consensus       268 ~l~  270 (317)
T 3o53_A          268 AKQ  270 (317)
T ss_dssp             HHH
T ss_pred             ECC
Confidence            766

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=6.7e-25  Score=216.31  Aligned_cols=225  Identities=20%  Similarity=0.227  Sum_probs=149.9

Q ss_pred             CcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCE
Q 043523          364 IYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQV  443 (650)
Q Consensus       364 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~  443 (650)
                      .+++.|++++|.+. .+|..+...  ++|++|++++|.+. .++.. +..+++|++|++++|.++ .+|..+..+++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l--~~L~~L~L~~n~l~-~lp~~-~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRL--SHLQHMTIDAAGLM-ELPDT-MQQFAGLETLTLARNPLR-ALPASIASLNRLRE  154 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGG--TTCSEEEEESSCCC-CCCSC-GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred             cceeEEEccCCCch-hcChhhhhC--CCCCEEECCCCCcc-chhHH-HhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence            34555555555554 444433332  25555555555555 44433 555666666666666665 45555666666666


Q ss_pred             EeCCCCccccccchhhh---------cCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHH
Q 043523          444 LDLKNNHISDNFPCWLG---------NASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTME  514 (650)
Q Consensus       444 L~Ls~n~l~~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~  514 (650)
                      |++++|.+.+..|..+.         ++++|++|++++|.++   .++..+.++++|++|++++|.+.+. +.       
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~---~lp~~l~~l~~L~~L~L~~N~l~~l-~~-------  223 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR---SLPASIANLQNLKSLKIRNSPLSAL-GP-------  223 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC---CCCGGGGGCTTCCEEEEESSCCCCC-CG-------
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC---cchHhhcCCCCCCEEEccCCCCCcC-ch-------
Confidence            66666555554554443         3666666666666665   2244566666666666666665421 11       


Q ss_pred             hhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccc
Q 043523          515 EMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHN  594 (650)
Q Consensus       515 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n  594 (650)
                                                              .+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus       224 ----------------------------------------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n  263 (328)
T 4fcg_A          224 ----------------------------------------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC  263 (328)
T ss_dssp             ----------------------------------------GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC
T ss_pred             ----------------------------------------hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC
Confidence                                                    1134567777777777777777788888899999999999


Q ss_pred             cCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCc
Q 043523          595 ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV  645 (650)
Q Consensus       595 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  645 (650)
                      .+.+..|.+++.+++|++|++++|.+.+.+|+.+.++++|+.+++..+.+.
T Consensus       264 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            888888888999999999999999998889999999999999998877654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=6.9e-24  Score=219.80  Aligned_cols=197  Identities=20%  Similarity=0.193  Sum_probs=121.4

Q ss_pred             cEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCcccc
Q 043523          298 RLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLS  377 (650)
Q Consensus       298 ~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  377 (650)
                      ..++..+..+........+++++|++++|+++.++...+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+.
T Consensus        57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  136 (452)
T 3zyi_A           57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT  136 (452)
T ss_dssp             CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC
Confidence            44555555555544445567888888888888776666677999999999999999888888989998999999888877


Q ss_pred             ccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCC-ccccccchhcccCCCCCEEeCCCCccccccc
Q 043523          378 GTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGN-QLQGVVPKSLANCNMLQVLDLKNNHISDNFP  456 (650)
Q Consensus       378 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  456 (650)
                      ...+..+...  ++|++|++++|.+. .++...|..+++|++|++++| .+....+..|..+++|++|++++|++.+. +
T Consensus       137 ~~~~~~~~~l--~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~  212 (452)
T 3zyi_A          137 VIPSGAFEYL--SKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P  212 (452)
T ss_dssp             BCCTTTSSSC--TTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C
T ss_pred             ccChhhhccc--CCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c
Confidence            3333323222  25666666666555 444444555666666666653 33333334455555666666666655542 2


Q ss_pred             hhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCccc
Q 043523          457 CWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKF  501 (650)
Q Consensus       457 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~  501 (650)
                       .+..+++|++|++++|.+++..  +..+.++++|++|++++|.+
T Consensus       213 -~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~l  254 (452)
T 3zyi_A          213 -NLTPLVGLEELEMSGNHFPEIR--PGSFHGLSSLKKLWVMNSQV  254 (452)
T ss_dssp             -CCTTCTTCCEEECTTSCCSEEC--GGGGTTCTTCCEEECTTSCC
T ss_pred             -cccccccccEEECcCCcCcccC--cccccCccCCCEEEeCCCcC
Confidence             2445555555555555555443  33444444455555444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=6.9e-24  Score=218.95  Aligned_cols=198  Identities=20%  Similarity=0.192  Sum_probs=136.4

Q ss_pred             cEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCcccc
Q 043523          298 RLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLS  377 (650)
Q Consensus       298 ~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  377 (650)
                      ..++..+..+........++++.|++++|+++.++...+..+++|+.|++++|.+....+..+.++++|+.|++++|.+.
T Consensus        46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~  125 (440)
T 3zyj_A           46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT  125 (440)
T ss_dssp             CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred             CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence            34555555555555555567888888888888777666777899999999999999888888999999999999999887


Q ss_pred             ccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCC-ccccccchhcccCCCCCEEeCCCCccccccc
Q 043523          378 GTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGN-QLQGVVPKSLANCNMLQVLDLKNNHISDNFP  456 (650)
Q Consensus       378 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  456 (650)
                      ...+..+...  ++|++|++++|.+. .++...|..+++|++|++++| .+....+..|..+++|++|++++|++..+ |
T Consensus       126 ~~~~~~~~~l--~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~  201 (440)
T 3zyj_A          126 TIPNGAFVYL--SKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P  201 (440)
T ss_dssp             SCCTTTSCSC--SSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C
T ss_pred             eeCHhHhhcc--ccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c
Confidence            4333333332  36777777777766 455555777777777777774 34434445667777777777777777653 2


Q ss_pred             hhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccc
Q 043523          457 CWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFS  502 (650)
Q Consensus       457 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  502 (650)
                       .+..+++|++|++++|+++...  +..+.++++|++|++++|.+.
T Consensus       202 -~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~  244 (440)
T 3zyj_A          202 -NLTPLIKLDELDLSGNHLSAIR--PGSFQGLMHLQKLWMIQSQIQ  244 (440)
T ss_dssp             -CCTTCSSCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCC
T ss_pred             -ccCCCcccCEEECCCCccCccC--hhhhccCccCCEEECCCCcee
Confidence             3566777777777777766554  455666666666666666554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=3.6e-24  Score=211.08  Aligned_cols=228  Identities=16%  Similarity=0.160  Sum_probs=137.2

Q ss_pred             CCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEE
Q 043523          316 TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVL  395 (650)
Q Consensus       316 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L  395 (650)
                      .+++.|++++|+++.+|..++. +++|+++++++|.+. .+|..+..+++|+.|++++|.+. .+|..+....  +|++|
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~--~L~~L  155 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLN--RLREL  155 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCT--TCCEE
T ss_pred             cceeEEEccCCCchhcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCc--CCCEE
Confidence            3455555566666656655554 666666666666666 55666666666666666666665 4555444332  56666


Q ss_pred             EccCccCCCcCCCcc--------cCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCe
Q 043523          396 NLGRNNLNGTLSDTI--------FPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQV  467 (650)
Q Consensus       396 ~l~~~~~~~~~~~~~--------~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~  467 (650)
                      ++++|++.+.++...        |..+++|++|++++|+++ .+|..+..+++|++|++++|++.+ .+..+..+++|++
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~  233 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE  233 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence            666655554544431        222444555555555544 344444455555555555555444 2333444455555


Q ss_pred             EEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEe
Q 043523          468 LVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVT  547 (650)
Q Consensus       468 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  547 (650)
                      |++++|.+.+..  +..+.                                                             
T Consensus       234 L~Ls~n~~~~~~--p~~~~-------------------------------------------------------------  250 (328)
T 4fcg_A          234 LDLRGCTALRNY--PPIFG-------------------------------------------------------------  250 (328)
T ss_dssp             EECTTCTTCCBC--CCCTT-------------------------------------------------------------
T ss_pred             EECcCCcchhhh--HHHhc-------------------------------------------------------------
Confidence            555554443322  23333                                                             


Q ss_pred             eccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCcc
Q 043523          548 VKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK  623 (650)
Q Consensus       548 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~  623 (650)
                                .+++|++|++++|.+.+..+..+..+++|++|+|++|++.+.+|.+++++++|+.+++..+.+...
T Consensus       251 ----------~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l  316 (328)
T 4fcg_A          251 ----------GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL  316 (328)
T ss_dssp             ----------CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred             ----------CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence                      345566666666666667777788899999999999999989999999999999999987766543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=1.2e-26  Score=250.52  Aligned_cols=85  Identities=13%  Similarity=0.024  Sum_probs=44.2

Q ss_pred             CCcccEEeCCCCccccCCCccc-cCCcCCCEEeCccccCcccCCc-CccCCCCCCeeeCCCCcCCccCCccc-cCCCCCC
Q 043523          559 PNIFTSIDFSSNNFEGPIPEEM-GRFKSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPAQL-ASLNFLS  635 (650)
Q Consensus       559 ~~~l~~L~l~~~~~~~~~~~~~-~~l~~L~~L~ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~l-~~l~~L~  635 (650)
                      +++|+.|++++|.+++.....+ ..+++|++|+|++|.+++.... ....+++|++|++++|.++......+ ..+++|+
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~  534 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLN  534 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEE
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCE
Confidence            4556666666666544333333 4456666666666666543222 23345666666666666643333333 4455555


Q ss_pred             eEEccCCc
Q 043523          636 VLNLSYNN  643 (650)
Q Consensus       636 ~L~l~~n~  643 (650)
                      ...+..+.
T Consensus       535 i~~~~~~~  542 (594)
T 2p1m_B          535 VEVIDERG  542 (594)
T ss_dssp             EEEECSSS
T ss_pred             EEEecCCC
Confidence            55555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=2.3e-26  Score=248.31  Aligned_cols=137  Identities=19%  Similarity=0.079  Sum_probs=67.8

Q ss_pred             CCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCC-cCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCC
Q 043523          163 LLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGN-RLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIP  241 (650)
Q Consensus       163 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~  241 (650)
                      .+++|++|++++|.+...........+++|++|++++| .+.+.....++..+++|+.|++++|.++....     ..++
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~-----~~l~  177 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG-----HWLS  177 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCG-----GGGG
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcch-----HHHH
Confidence            35566666666655443222222223556666666666 23322122333567777777777776553221     1122


Q ss_pred             C-CCCCCCCcEEEccCCcCCCCCChhHHhh--cCcccceeeeccc-cccCCcCcc-cCCcccEEEeccC
Q 043523          242 I-LKNQSQLSGLDISNNQIPGEIPNWIWEV--GNGNLNFLNLSHN-LLVSLQEPY-SISSIRLLDLHSN  305 (650)
Q Consensus       242 ~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~--~~~~L~~L~l~~~-~l~~l~~~~-~l~~L~~L~l~~~  305 (650)
                      . ...+++|++|+++++. .......+...  ..++|++|++++| .+..++... .+++|+.+++..+
T Consensus       178 ~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          178 HFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             GSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred             HHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence            2 3356677888877775 21112222221  2345777777766 333332222 2566666665544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.4e-23  Score=202.32  Aligned_cols=208  Identities=22%  Similarity=0.197  Sum_probs=161.8

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL  470 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  470 (650)
                      ++++|++++|.+. .++...|..+++|++|++++|++++..+..|..+++|++|++++|++....+..|.++++|++|++
T Consensus        29 ~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            6788888888877 444445788888888888888888667777888888888888888888877777888888888888


Q ss_pred             cCcccceecCCCCCCCCCCCCCeeeCCCcccccc-cChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeec
Q 043523          471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGR-LSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVK  549 (650)
Q Consensus       471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  549 (650)
                      ++|.+....  ...+..+++|++|++++|.+... .+.                                          
T Consensus       108 ~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~l~~------------------------------------------  143 (276)
T 2z62_A          108 VETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLPE------------------------------------------  143 (276)
T ss_dssp             TTSCCCCST--TCCCTTCTTCCEEECCSSCCCCCCCCG------------------------------------------
T ss_pred             CCCCccccC--chhcccCCCCCEEECcCCccceecCch------------------------------------------
Confidence            888887654  34577788888888888876532 111                                          


Q ss_pred             cchhhcccCCCcccEEeCCCCccccCCCccccCCcCCC----EEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCC
Q 043523          550 GVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLY----ALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP  625 (650)
Q Consensus       550 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~----~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  625 (650)
                           .+..++.|++|++++|.+.++.+..+..+++|+    .|++++|++++..+..+. ..+|++|++++|.+++.++
T Consensus       144 -----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~  217 (276)
T 2z62_A          144 -----YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPD  217 (276)
T ss_dssp             -----GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCT
T ss_pred             -----hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCH
Confidence                 123567888888888888877777777777777    889999999866665554 4589999999999988888


Q ss_pred             ccccCCCCCCeEEccCCcCcccCC
Q 043523          626 AQLASLNFLSVLNLSYNNLVGKIP  649 (650)
Q Consensus       626 ~~l~~l~~L~~L~l~~n~~~~~~p  649 (650)
                      ..|..+++|+.|++++|++.+..|
T Consensus       218 ~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          218 GIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             TTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             hHhcccccccEEEccCCcccccCC
Confidence            888899999999999998887655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=1.5e-24  Score=213.23  Aligned_cols=219  Identities=23%  Similarity=0.198  Sum_probs=140.8

Q ss_pred             CCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCC
Q 043523          362 KGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNML  441 (650)
Q Consensus       362 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L  441 (650)
                      .+++|+.|++++|.+.+..+..+....  +|++|++++|.+.+..+   |..+++|++|++++|++++..     ..++|
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~-----~~~~L  101 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFT--KLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGPSI  101 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCT--TCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEE-----ECTTC
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCC--cCCEEECCCCcCCcchh---hhhcCCCCEEECcCCcccccc-----CCCCc
Confidence            334445555555544433333332222  55555555555442222   556666666666666665322     23666


Q ss_pred             CEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhc
Q 043523          442 QVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAET  521 (650)
Q Consensus       442 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~  521 (650)
                      ++|++++|++....+.   .+++|++|++++|+++...  +..+..+++|++|++++|.+....+..             
T Consensus       102 ~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------------  163 (317)
T 3o53_A          102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDTVNFAE-------------  163 (317)
T ss_dssp             CEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGG--GBCTGGGSSEEEEECTTSCCCEEEGGG-------------
T ss_pred             CEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCcc--chhhhccCCCCEEECCCCCCCcccHHH-------------
Confidence            6777777766664433   2566677777777666543  334555666777777777654321111             


Q ss_pred             ccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCC
Q 043523          522 KSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIP  601 (650)
Q Consensus       522 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~  601 (650)
                                                       ....++.|++|++++|.+.+..  ....+++|++|++++|++++. +
T Consensus       164 ---------------------------------~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l-~  207 (317)
T 3o53_A          164 ---------------------------------LAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFM-G  207 (317)
T ss_dssp             ---------------------------------GGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEE-C
T ss_pred             ---------------------------------HhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcc-h
Confidence                                             1123567788888888877553  233589999999999999954 4


Q ss_pred             cCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCc
Q 043523          602 SSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV  645 (650)
Q Consensus       602 ~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  645 (650)
                      ..+..+++|++|++++|.++. +|..+..+++|+.|++++|++.
T Consensus       208 ~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          208 PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCB
T ss_pred             hhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCcc
Confidence            558999999999999999995 5667999999999999999998

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=6.1e-23  Score=196.86  Aligned_cols=201  Identities=23%  Similarity=0.273  Sum_probs=113.0

Q ss_pred             ccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEe
Q 043523          366 FQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLD  445 (650)
Q Consensus       366 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~  445 (650)
                      .+.++++++.++ .+|..+.    +++++|++++|.+. .++...|..+++|++|++++|.++...+..|..+++|++|+
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~----~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP----ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC----TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred             CCEEEccCCCCC-ccCCCCC----CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence            455666666555 3333222    25566666666555 33333355556666666666655544444455556666666


Q ss_pred             CCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCc
Q 043523          446 LKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGS  525 (650)
Q Consensus       446 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~  525 (650)
                      +++|++..+.+..|..+++|++|++++|.++...  +..+..+++                                   
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~-----------------------------------  134 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP--PRVFDSLTK-----------------------------------  134 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC--TTTTTTCTT-----------------------------------
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccCeeC--HHHhCcCcC-----------------------------------
Confidence            6666655544455555555555555555554332  233344444                                   


Q ss_pred             ccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCcc
Q 043523          526 ELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFG  605 (650)
Q Consensus       526 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~  605 (650)
                                                          |++|++++|.+.++.+..+..+++|++|++++|++++..+.+|.
T Consensus       135 ------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  178 (270)
T 2o6q_A          135 ------------------------------------LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD  178 (270)
T ss_dssp             ------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             ------------------------------------CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhc
Confidence                                                45555555555544444556666666666666666655555566


Q ss_pred             CCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCc
Q 043523          606 NLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV  645 (650)
Q Consensus       606 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  645 (650)
                      .+++|++|++++|.+++.++..|..+++|+.|++++|++.
T Consensus       179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            6666666666666666655556666666666666666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=5.3e-25  Score=216.02  Aligned_cols=248  Identities=21%  Similarity=0.209  Sum_probs=128.5

Q ss_pred             CCcccEEEeccCcCCCCCCC-CCCCccEEecCCCcCC--CCchhhh------hccCCccEEEccCCcccccccccc--cC
Q 043523          294 ISSIRLLDLHSNQLRGNIPH-MSTNTSYVDYSNNHFT--FIPADIG------NFMSETEYFFAANNSLVGVIPESV--CK  362 (650)
Q Consensus       294 l~~L~~L~l~~~~l~~~~~~-~~~~L~~L~l~~~~i~--~~~~~~~------~~~~~l~~l~l~~~~~~~~~~~~l--~~  362 (650)
                      .++|+.+++++|.+  ..+. ....++.+++++|+++  .++...+      ..+++++++++++|.+.+..|..+  ..
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            34555666666665  2222 2233566666666654  2333322      125566666666666665555544  55


Q ss_pred             CCcccEEECcCccccccCChhhhhcc---ccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccc--cchhc--
Q 043523          363 GIYFQVLDLSNNNLSGTIPACLIAQS---ETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGV--VPKSL--  435 (650)
Q Consensus       363 ~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~--~~~~~--  435 (650)
                      +++|+.|++++|.+.+. |..+....   .++|++|++++|++. .++...|..+++|++|++++|++.+.  .+..+  
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            55666666666665543 43333220   125555555555555 23322355555555555555554432  12222  


Q ss_pred             ccCCCCCEEeCCCCcccc---ccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHh
Q 043523          436 ANCNMLQVLDLKNNHISD---NFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLT  512 (650)
Q Consensus       436 ~~l~~L~~L~Ls~n~l~~---~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  512 (650)
                      ..+++|++|++++|++..   .....+..+++|++|++++|++.+... ...+..                         
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~-------------------------  251 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-APSCDW-------------------------  251 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-CSCCCC-------------------------
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-hhhhhh-------------------------
Confidence            455555555555555552   111223344555555555555543210 012222                         


Q ss_pred             HHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCc
Q 043523          513 MEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMS  592 (650)
Q Consensus       513 l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls  592 (650)
                                                                    ++.|++|++++|.++. .+..+.  ++|++|+++
T Consensus       252 ----------------------------------------------l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls  282 (312)
T 1wwl_A          252 ----------------------------------------------PSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLS  282 (312)
T ss_dssp             ----------------------------------------------CTTCCEEECTTSCCSS-CCSSCC--SEEEEEECC
T ss_pred             ----------------------------------------------cCCCCEEECCCCccCh-hhhhcc--CCceEEECC
Confidence                                                          3455555566665552 233333  678888888


Q ss_pred             cccCcccCCcCccCCCCCCeeeCCCCcCCc
Q 043523          593 HNALTGSIPSSFGNLKQIESLDLSMNNLSG  622 (650)
Q Consensus       593 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~  622 (650)
                      +|++++. |. +..+++|++|++++|++++
T Consensus       283 ~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          283 YNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            8888754 54 7777888888888887764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.90  E-value=8.9e-22  Score=208.56  Aligned_cols=264  Identities=24%  Similarity=0.267  Sum_probs=139.1

Q ss_pred             CCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEcc
Q 043523           22 TLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFS  101 (650)
Q Consensus        22 ~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~  101 (650)
                      +++.|+++++.++.. +..+.  ++|++|++++|.++ .+|.   .+++|++|++++|+++ .+|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~~l-p~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCSCC-CSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcCcc-ChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence            577788888877533 23333  67788888887777 4444   4677777777777776 4444   56777777777


Q ss_pred             CCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCC
Q 043523          102 SNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQL  181 (650)
Q Consensus       102 ~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  181 (650)
                      +|.+..++.   .+++|++|++++|.++. ++.    .+++|++|++++|.+... +.   .+++|+.|+++        
T Consensus       110 ~N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~--------  169 (622)
T 3g06_A          110 SNPLTHLPA---LPSGLCKLWIFGNQLTS-LPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAY--------  169 (622)
T ss_dssp             SCCCCCCCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECC--------
T ss_pred             CCcCCCCCC---CCCCcCEEECCCCCCCc-CCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECC--------
Confidence            777765544   44667777777776652 322    124555555555554422 11   12344444444        


Q ss_pred             chhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCC
Q 043523          182 PEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPG  261 (650)
Q Consensus       182 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~  261 (650)
                                       +|.+. .+|    ..+++|+.|++++|.++.+..            ..++|+.|++++|.+. 
T Consensus       170 -----------------~N~l~-~l~----~~~~~L~~L~Ls~N~l~~l~~------------~~~~L~~L~L~~N~l~-  214 (622)
T 3g06_A          170 -----------------NNQLT-SLP----MLPSGLQELSVSDNQLASLPT------------LPSELYKLWAYNNRLT-  214 (622)
T ss_dssp             -----------------SSCCS-CCC----CCCTTCCEEECCSSCCSCCCC------------CCTTCCEEECCSSCCS-
T ss_pred             -----------------CCCCC-CCc----ccCCCCcEEECCCCCCCCCCC------------ccchhhEEECcCCccc-
Confidence                             44443 233    223445555555554432110            1134444444444443 


Q ss_pred             CCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCC
Q 043523          262 EIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSE  341 (650)
Q Consensus       262 ~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~  341 (650)
                      .+|..     .++|+.|++++|.++.++                       ..+++|+.|++++|+++.+|.    .+++
T Consensus       215 ~l~~~-----~~~L~~L~Ls~N~L~~lp-----------------------~~l~~L~~L~Ls~N~L~~lp~----~~~~  262 (622)
T 3g06_A          215 SLPAL-----PSGLKELIVSGNRLTSLP-----------------------VLPSELKELMVSGNRLTSLPM----LPSG  262 (622)
T ss_dssp             SCCCC-----CTTCCEEECCSSCCSCCC-----------------------CCCTTCCEEECCSSCCSCCCC----CCTT
T ss_pred             ccCCC-----CCCCCEEEccCCccCcCC-----------------------CCCCcCcEEECCCCCCCcCCc----cccc
Confidence            22211     123444444444444333                       223344444444444444443    2455


Q ss_pred             ccEEEccCCcccccccccccCCCcccEEECcCccccccCChhh
Q 043523          342 TEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACL  384 (650)
Q Consensus       342 l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  384 (650)
                      |+.|++++|.+. .+|..+..+++|+.|++++|.+.+..+..+
T Consensus       263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l  304 (622)
T 3g06_A          263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  304 (622)
T ss_dssp             CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred             CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence            556666666555 345556666666777777766665555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=5.6e-24  Score=221.31  Aligned_cols=236  Identities=21%  Similarity=0.206  Sum_probs=140.7

Q ss_pred             CCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccE
Q 043523          315 STNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGV  394 (650)
Q Consensus       315 ~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  394 (650)
                      ++++++|++++|.++.++...+..+++|+.|++++|.+.+..|  +..+++|+.|++++|.+.+..+.       ++|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~-------~~L~~  103 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG-------PSIET  103 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC-------TTCCE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC-------CCcCE
Confidence            3466677777776666655555556666666666666665544  56666666666666666532211       26666


Q ss_pred             EEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhh-cCCCCCeEEccCc
Q 043523          395 LNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLG-NASSLQVLVLQSN  473 (650)
Q Consensus       395 L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n  473 (650)
                      |++++|.+.+..+.    .+++|+.|++++|.+++..+..+..+++|++|+|++|.+.+..+..+. .+++|++|++++|
T Consensus       104 L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          104 LHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             EECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            66666666533222    235566666666666655555566666666666666666665555554 4666666666666


Q ss_pred             ccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchh
Q 043523          474 NFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVET  553 (650)
Q Consensus       474 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  553 (650)
                      .+++..    ....++                                                                
T Consensus       180 ~l~~~~----~~~~l~----------------------------------------------------------------  191 (487)
T 3oja_A          180 FIYDVK----GQVVFA----------------------------------------------------------------  191 (487)
T ss_dssp             CCCEEE----CCCCCT----------------------------------------------------------------
T ss_pred             cccccc----ccccCC----------------------------------------------------------------
Confidence            655432    111234                                                                


Q ss_pred             hcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCC-ccCCccccCCC
Q 043523          554 MLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS-GKIPAQLASLN  632 (650)
Q Consensus       554 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~l~~l~  632 (650)
                             .|+.|++++|.++++++. +..+++|+.|++++|.+++ +|.++..+++|+.|++++|.+. +.+|..+..++
T Consensus       192 -------~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~  262 (487)
T 3oja_A          192 -------KLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (487)
T ss_dssp             -------TCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred             -------CCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence                   445555555555544333 5666777777777777773 5566677777777777777776 44556666666


Q ss_pred             CCCeEEcc
Q 043523          633 FLSVLNLS  640 (650)
Q Consensus       633 ~L~~L~l~  640 (650)
                      .|+.++++
T Consensus       263 ~L~~l~~~  270 (487)
T 3oja_A          263 RVQTVAKQ  270 (487)
T ss_dssp             HHHHHHHH
T ss_pred             CCcEEecc
Confidence            66666664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=3.8e-23  Score=215.00  Aligned_cols=216  Identities=23%  Similarity=0.190  Sum_probs=147.7

Q ss_pred             cccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEE
Q 043523          365 YFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVL  444 (650)
Q Consensus       365 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L  444 (650)
                      +|+.|++++|.+.+..+..+....  +|++|++++|.+.+..+   |..+++|++|++++|.+++..     ..++|++|
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L  104 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFT--KLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGPSIETL  104 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCT--TCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCC--CCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence            555666666655544444443322  56666666666553332   666677777777777766432     22677777


Q ss_pred             eCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccC
Q 043523          445 DLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSG  524 (650)
Q Consensus       445 ~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~  524 (650)
                      ++++|.+.+..+.   .+++|++|++++|.+++..  +..+.++++|+.|++++|.+++..+..+               
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---------------  164 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDTVNFAEL---------------  164 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGG--GBCGGGGSSEEEEECTTSCCCEEEGGGG---------------
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCC--chhhcCCCCCCEEECCCCCCCCcChHHH---------------
Confidence            7777777764443   3567777777777776543  4455666777777777776654322211               


Q ss_pred             cccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCc
Q 043523          525 SELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSF  604 (650)
Q Consensus       525 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~  604 (650)
                                                     ...++.|+.|++++|.+++..+  ...+++|+.|+|++|.+++.. ..+
T Consensus       165 -------------------------------~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~  210 (487)
T 3oja_A          165 -------------------------------AASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG-PEF  210 (487)
T ss_dssp             -------------------------------GGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC-GGG
T ss_pred             -------------------------------hhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCC-HhH
Confidence                                           1245778888888888876633  445899999999999999654 458


Q ss_pred             cCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCc
Q 043523          605 GNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV  645 (650)
Q Consensus       605 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  645 (650)
                      ..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.
T Consensus       211 ~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          211 QSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             GGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             cCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            999999999999999996 5667999999999999999998

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=5.3e-22  Score=191.27  Aligned_cols=214  Identities=22%  Similarity=0.206  Sum_probs=139.3

Q ss_pred             CCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCC
Q 043523            6 ECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPI   85 (650)
Q Consensus         6 ~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~   85 (650)
                      +.+++ ..|..+.  ++|++|++++|.++......|.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..
T Consensus        16 ~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~   92 (276)
T 2z62_A           16 ELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA   92 (276)
T ss_dssp             TSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             CCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence            33444 3444443  46888888888887666667888888888888888887666667888888888888888888777


Q ss_pred             CcCccCCCCCcEEEccCCcccccCC-ccccCCCcCEEeCCCCcCccc-CChHHHhccccCCeEEccCCcCCCCcchhccC
Q 043523           86 PPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGG-ISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL  163 (650)
Q Consensus        86 ~~~l~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  163 (650)
                      +..|.++++|++|++++|.+....+ .+..+++|++|++++|.+++. ++.. +.++++|++|++++|.+....+..+..
T Consensus        93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~  171 (276)
T 2z62_A           93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRV  171 (276)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred             hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCCHHHhhh
Confidence            7788888888888888888876655 566778888888888877643 2444 677777888888877777655555555


Q ss_pred             CCCCC----EEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCc
Q 043523          164 LPNLE----TLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNK  226 (650)
Q Consensus       164 l~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~  226 (650)
                      +++++    .+++++|.+....+...  ...+|+.|++++|.+. .+|...|..+++|+.|++++|+
T Consensus       172 l~~L~~l~l~L~ls~n~l~~~~~~~~--~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          172 LHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             HHTCTTCCEEEECCSSCCCEECTTSS--CSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSC
T ss_pred             hhhccccceeeecCCCcccccCcccc--CCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCc
Confidence            55554    66666666553222111  1124555555555444 3333333334444444444433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=1.2e-22  Score=199.21  Aligned_cols=235  Identities=20%  Similarity=0.179  Sum_probs=179.5

Q ss_pred             CcccEEECcCcccccc-CChhhhhccccCccEEEccCccCCCcCCCccc-CCCCCccEEEcCCCccccccc----hhccc
Q 043523          364 IYFQVLDLSNNNLSGT-IPACLIAQSETTLGVLNLGRNNLNGTLSDTIF-PRNCGLQILDLGGNQLQGVVP----KSLAN  437 (650)
Q Consensus       364 ~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~ls~~~i~~~~~----~~~~~  437 (650)
                      ..++.+.+.++.+... +.........++|++|++++|.+.+..+...+ ..+++|++|++++|.+.+..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            3466677777665432 11112222234799999999999877776644 889999999999999986544    44567


Q ss_pred             CCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecC--CCCCCCCCCCCCeeeCCCcccccccChHHHHhHHh
Q 043523          438 CNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHIS--CPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEE  515 (650)
Q Consensus       438 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~  515 (650)
                      +++|++|++++|++....+..+..+++|++|++++|++.+..+  ....+..+++|++|++++|.++.....        
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~--------  215 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV--------  215 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH--------
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH--------
Confidence            9999999999999998888889999999999999999764321  123346789999999999987521110        


Q ss_pred             hHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCC---cCCCEEeCc
Q 043523          516 MMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRF---KSLYALNMS  592 (650)
Q Consensus       516 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l---~~L~~L~ls  592 (650)
                                                          .......++.|++|++++|.+.+..+..+..+   ++|++|+++
T Consensus       216 ------------------------------------~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls  259 (310)
T 4glp_A          216 ------------------------------------CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLS  259 (310)
T ss_dssp             ------------------------------------HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECC
T ss_pred             ------------------------------------HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECC
Confidence                                                00011356889999999999998877667766   699999999


Q ss_pred             cccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCccc
Q 043523          593 HNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGK  647 (650)
Q Consensus       593 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~  647 (650)
                      +|+++ .+|.++.  ++|++|++++|++++. | .+..+++|+.|++++|+++++
T Consensus       260 ~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          260 FAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P-QPDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             SSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C-CTTSCCCCSCEECSSTTTSCC
T ss_pred             CCCCC-chhhhhc--CCCCEEECCCCcCCCC-c-hhhhCCCccEEECcCCCCCCC
Confidence            99999 6677664  8999999999999976 3 278999999999999999863

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.9e-21  Score=186.38  Aligned_cols=212  Identities=19%  Similarity=0.220  Sum_probs=163.0

Q ss_pred             ccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccc
Q 043523          297 IRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNL  376 (650)
Q Consensus       297 L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  376 (650)
                      .++++++++.+.......++++++|++++|+++.++...+..+++|+++++++|.+....+..+..+++|+.|++++|.+
T Consensus        18 ~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l   97 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL   97 (270)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred             CCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence            34555555555543333445666777777777766665556677888888888877766666667788888888888888


Q ss_pred             cccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccc
Q 043523          377 SGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFP  456 (650)
Q Consensus       377 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  456 (650)
                      ....+..+...  ++|++|++++|.+. .++...|..+++|++|++++|.+++..+..|..+++|++|++++|++..+.+
T Consensus        98 ~~~~~~~~~~l--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A           98 QALPIGVFDQL--VNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             CCCCTTTTTTC--SSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCHhHcccc--cCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            74444444333  38999999999888 5555568999999999999999997777779999999999999999999878


Q ss_pred             hhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccC-hHHHHhH
Q 043523          457 CWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLS-QKWLLTM  513 (650)
Q Consensus       457 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~l  513 (650)
                      ..|..+++|++|++++|+++...  ...+..+++|+.|++++|++.+.+. ..++..+
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~  230 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVP--EGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKW  230 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHH
T ss_pred             hHhccCCCcCEEECCCCcCCcCC--HHHhccccCCCEEEecCCCeeCCCccHHHHHHH
Confidence            88999999999999999998654  4567889999999999999999886 4444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=3.6e-22  Score=191.63  Aligned_cols=84  Identities=18%  Similarity=0.171  Sum_probs=44.7

Q ss_pred             CCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEE
Q 043523          559 PNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLN  638 (650)
Q Consensus       559 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~  638 (650)
                      ++.|+.|++++|.+++..+..+..+++|++|++++|++++..+..++.+++|++|++++|.+.+.       +++|+.++
T Consensus       156 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~  228 (272)
T 3rfs_A          156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLS  228 (272)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHH
T ss_pred             CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHH
Confidence            34444455555555444444455555555555555555555555555555555555555555422       33455555


Q ss_pred             ccCCcCcccCC
Q 043523          639 LSYNNLVGKIP  649 (650)
Q Consensus       639 l~~n~~~~~~p  649 (650)
                      ++.|.++|.+|
T Consensus       229 ~~~n~~~g~ip  239 (272)
T 3rfs_A          229 EWINKHSGVVR  239 (272)
T ss_dssp             HHHHHTGGGBB
T ss_pred             HHHHhCCCccc
Confidence            55555555555

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=2.5e-21  Score=186.94  Aligned_cols=213  Identities=21%  Similarity=0.199  Sum_probs=179.3

Q ss_pred             cCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECc
Q 043523          293 SISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLS  372 (650)
Q Consensus       293 ~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~  372 (650)
                      .++++++++++++.+.......+++++.|++++|+++.++...+..+++|+.+++++|.+.+..+.  ..+++|+.|+++
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls   85 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS   85 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred             ccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence            356677777777777766555667888888888888877777677789999999999998876443  688899999999


Q ss_pred             CccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccc
Q 043523          373 NNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHIS  452 (650)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~  452 (650)
                      +|.+. .+|..+..  .++|++|++++|++. .++...|..+++|++|++++|++++..+..|..+++|++|+|++|+++
T Consensus        86 ~N~l~-~l~~~~~~--l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           86 HNQLQ-SLPLLGQT--LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             SSCCS-SCCCCTTT--CTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCcCC-cCchhhcc--CCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            99987 56654443  349999999999998 666666999999999999999999887888899999999999999999


Q ss_pred             cccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHH
Q 043523          453 DNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTME  514 (650)
Q Consensus       453 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~  514 (650)
                      .+.+..|..+++|++|++++|+++..   +..+...++|+.+++++|++.|.+...|+..|.
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~N~l~~i---p~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl  220 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQENSLYTI---PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL  220 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHH
T ss_pred             ccCHHHhcCcCCCCEEECCCCcCCcc---ChhhcccccCCeEEeCCCCccCcCccHHHHHHH
Confidence            97777888999999999999999843   667777889999999999999999888876653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=2.8e-21  Score=186.64  Aligned_cols=87  Identities=20%  Similarity=0.208  Sum_probs=52.5

Q ss_pred             CCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeE
Q 043523          558 VPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVL  637 (650)
Q Consensus       558 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  637 (650)
                      .++.|++|++++|.+.++.+..+..+++|+.|++++|+++...+..|..+++|++|++++|+++. +|..+..+++|+.+
T Consensus       122 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l  200 (290)
T 1p9a_G          122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFA  200 (290)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEE
T ss_pred             CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeE
Confidence            34555555555555555555556666666666666666665555555666666666666666663 34445555666666


Q ss_pred             EccCCcCc
Q 043523          638 NLSYNNLV  645 (650)
Q Consensus       638 ~l~~n~~~  645 (650)
                      ++++|++.
T Consensus       201 ~L~~Np~~  208 (290)
T 1p9a_G          201 FLHGNPWL  208 (290)
T ss_dssp             ECCSCCBC
T ss_pred             EeCCCCcc
Confidence            66666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=8.8e-23  Score=204.71  Aligned_cols=264  Identities=17%  Similarity=0.182  Sum_probs=173.6

Q ss_pred             EEecCCCcCCCCchhhhhccCCccEEEccCCccccccc----ccccCCC-cccEEECcCccccccCChhhhhc---cccC
Q 043523          320 YVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIP----ESVCKGI-YFQVLDLSNNNLSGTIPACLIAQ---SETT  391 (650)
Q Consensus       320 ~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~---~~~~  391 (650)
                      +..++.+.++.....+....+.++++++++|.+.+..+    ..+..++ +|++|++++|.+.+..+..+...   ..++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35677777776555566656679999999988887766    6667777 89999999998886666555442   0137


Q ss_pred             ccEEEccCccCCCcCCCc---ccCCC-CCccEEEcCCCccccccchhcc----c-CCCCCEEeCCCCccccccch----h
Q 043523          392 LGVLNLGRNNLNGTLSDT---IFPRN-CGLQILDLGGNQLQGVVPKSLA----N-CNMLQVLDLKNNHISDNFPC----W  458 (650)
Q Consensus       392 L~~L~l~~~~~~~~~~~~---~~~~l-~~L~~L~ls~~~i~~~~~~~~~----~-l~~L~~L~Ls~n~l~~~~~~----~  458 (650)
                      |++|++++|.+.+..+..   .+..+ ++|++|++++|++++..+..+.    . +++|++|+|++|++++..+.    .
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            888888888877443332   13344 6788888888888766554443    3 36888888888888864433    3


Q ss_pred             hhcCC-CCCeEEccCcccceecC--CCCCCCCC-CCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeec
Q 043523          459 LGNAS-SLQVLVLQSNNFSGHIS--CPRNNVSW-PLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVI  534 (650)
Q Consensus       459 ~~~~~-~L~~L~l~~n~~~~~~~--~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~  534 (650)
                      +..++ +|++|++++|.++....  +...+..+ ++|++|++++|.+..........                       
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~-----------------------  218 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY-----------------------  218 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-----------------------
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH-----------------------
Confidence            34454 88888888888764320  11233344 48888888888776432211111                       


Q ss_pred             cCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCC----ccccCCcCCCEEeCccccCccc-------CCcC
Q 043523          535 SSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIP----EEMGRFKSLYALNMSHNALTGS-------IPSS  603 (650)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~----~~~~~l~~L~~L~ls~n~i~~~-------~~~~  603 (650)
                                         .....+++|++|++++|.+.+...    ..+..+++|++|++++|.+.+.       .+..
T Consensus       219 -------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~  279 (362)
T 3goz_A          219 -------------------IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA  279 (362)
T ss_dssp             -------------------HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTT
T ss_pred             -------------------HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHH
Confidence                               111234678888888888876544    3345667888888888874422       3345


Q ss_pred             ccCCCCCCeeeCCCCcCCccCC
Q 043523          604 FGNLKQIESLDLSMNNLSGKIP  625 (650)
Q Consensus       604 ~~~l~~L~~L~l~~n~i~~~~~  625 (650)
                      +..+++|+.||+++|.+....+
T Consensus       280 ~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          280 FPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             STTCCEEEEECTTSCBCCGGGC
T ss_pred             hccCCceEEEecCCCcCCCcch
Confidence            6677788888888888775533

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=8e-21  Score=179.93  Aligned_cols=105  Identities=16%  Similarity=0.171  Sum_probs=63.8

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL  470 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  470 (650)
                      ..+.++++++.+. .+|.. +.  ++++.|++++|++.+..+..|..+++|++|+|++|.+.+..+..|..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            4556666666655 44443 22  35677777777776666666667777777777777777666666666777777777


Q ss_pred             cCcccceecCCCCCCCCCCCCCeeeCCCccc
Q 043523          471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKF  501 (650)
Q Consensus       471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~  501 (650)
                      ++|+++...  +..+..+++|++|++++|.+
T Consensus        91 ~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l  119 (251)
T 3m19_A           91 ANNQLASLP--LGVFDHLTQLDKLYLGGNQL  119 (251)
T ss_dssp             TTSCCCCCC--TTTTTTCTTCCEEECCSSCC
T ss_pred             CCCcccccC--hhHhcccCCCCEEEcCCCcC
Confidence            777665432  33444555555555555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=2.9e-23  Score=210.57  Aligned_cols=195  Identities=16%  Similarity=0.184  Sum_probs=113.8

Q ss_pred             CCCCCccEEEcCCCcccc----ccchhcccCCCCCEEeCCCCccccccchhhhc----C---------CCCCeEEccCcc
Q 043523          412 PRNCGLQILDLGGNQLQG----VVPKSLANCNMLQVLDLKNNHISDNFPCWLGN----A---------SSLQVLVLQSNN  474 (650)
Q Consensus       412 ~~l~~L~~L~ls~~~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----~---------~~L~~L~l~~n~  474 (650)
                      ..+++|++|++++|.+..    .++..+..+++|++|+|++|.+.+..+..+..    +         ++|++|++++|+
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            455666666666666654    24455566666666666666665433333322    2         666666666666


Q ss_pred             cceec--CCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccch
Q 043523          475 FSGHI--SCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVE  552 (650)
Q Consensus       475 ~~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  552 (650)
                      ++...  .+...+..+++|++|++++|.+........                                          .
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l------------------------------------------~  208 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL------------------------------------------L  208 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH------------------------------------------H
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH------------------------------------------H
Confidence            64211  011234455666666666665541110000                                          0


Q ss_pred             hhcccCCCcccEEeCCCCccc----cCCCccccCCcCCCEEeCccccCccc----CCcCcc--CCCCCCeeeCCCCcCCc
Q 043523          553 TMLLKVPNIFTSIDFSSNNFE----GPIPEEMGRFKSLYALNMSHNALTGS----IPSSFG--NLKQIESLDLSMNNLSG  622 (650)
Q Consensus       553 ~~~~~~~~~l~~L~l~~~~~~----~~~~~~~~~l~~L~~L~ls~n~i~~~----~~~~~~--~l~~L~~L~l~~n~i~~  622 (650)
                      ...+..++.|++|++++|.++    ...+..+..+++|++|+|++|.+++.    ++.++.  .+++|++|++++|.++.
T Consensus       209 ~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            011234566677777777764    34445666777788888888877754    345553  37778888888887776


Q ss_pred             ----cCCccc-cCCCCCCeEEccCCcCcccC
Q 043523          623 ----KIPAQL-ASLNFLSVLNLSYNNLVGKI  648 (650)
Q Consensus       623 ----~~~~~l-~~l~~L~~L~l~~n~~~~~~  648 (650)
                          .+|..+ .++++|+.|++++|++++..
T Consensus       289 ~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          289 DAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence                355555 56778888888888777654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=7.8e-21  Score=182.27  Aligned_cols=93  Identities=20%  Similarity=0.223  Sum_probs=82.0

Q ss_pred             CCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeE
Q 043523          558 VPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVL  637 (650)
Q Consensus       558 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  637 (650)
                      .++.|++|++++|.+.+..+..+..+++|++|++++|++++..+..|+.+++|++|++++|.+++.++..+..+++|+.|
T Consensus       131 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (272)
T 3rfs_A          131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI  210 (272)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence            45566667777777776777778899999999999999998888888999999999999999999999899999999999


Q ss_pred             EccCCcCcccCCC
Q 043523          638 NLSYNNLVGKIPT  650 (650)
Q Consensus       638 ~l~~n~~~~~~p~  650 (650)
                      ++++|++.+..|.
T Consensus       211 ~l~~N~~~~~~~~  223 (272)
T 3rfs_A          211 WLHDNPWDCTCPG  223 (272)
T ss_dssp             ECCSSCBCCCTTT
T ss_pred             EccCCCccccCcH
Confidence            9999999988773

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=3.7e-22  Score=200.15  Aligned_cols=257  Identities=17%  Similarity=0.137  Sum_probs=152.7

Q ss_pred             EEeccCcCCCCCCC---CCCCccEEecCCCcCCCCch----hhhhccC-CccEEEccCCcccccccccccCC-----Ccc
Q 043523          300 LDLHSNQLRGNIPH---MSTNTSYVDYSNNHFTFIPA----DIGNFMS-ETEYFFAANNSLVGVIPESVCKG-----IYF  366 (650)
Q Consensus       300 L~l~~~~l~~~~~~---~~~~L~~L~l~~~~i~~~~~----~~~~~~~-~l~~l~l~~~~~~~~~~~~l~~~-----~~L  366 (650)
                      +.++.+.+.+..+.   ...++++|++++|.++..+.    ..+..++ +++++++++|.+.+..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            34556666554332   33457777787777776664    4444455 77778887777777666555553     777


Q ss_pred             cEEECcCccccccCChhhhhc--cc-cCccEEEccCccCCCcCCCc---ccCC-CCCccEEEcCCCccccccc----hhc
Q 043523          367 QVLDLSNNNLSGTIPACLIAQ--SE-TTLGVLNLGRNNLNGTLSDT---IFPR-NCGLQILDLGGNQLQGVVP----KSL  435 (650)
Q Consensus       367 ~~L~l~~~~~~~~~~~~~~~~--~~-~~L~~L~l~~~~~~~~~~~~---~~~~-l~~L~~L~ls~~~i~~~~~----~~~  435 (650)
                      ++|++++|.+.+..+..+...  .. ++|++|++++|.+.+.....   .+.. .++|++|++++|++++..+    .++
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            778887777765555433322  11 37777888777776333222   1333 3577778887777775433    333


Q ss_pred             ccCC-CCCEEeCCCCccccccchhhh----cC-CCCCeEEccCcccceecC--CCCCCCC-CCCCCeeeCCCcccccccC
Q 043523          436 ANCN-MLQVLDLKNNHISDNFPCWLG----NA-SSLQVLVLQSNNFSGHIS--CPRNNVS-WPLLQIVDLASNKFSGRLS  506 (650)
Q Consensus       436 ~~l~-~L~~L~Ls~n~l~~~~~~~~~----~~-~~L~~L~l~~n~~~~~~~--~~~~~~~-~~~L~~L~l~~n~~~~~~~  506 (650)
                      ..++ +|++|+|++|++++..+..+.    .+ ++|++|++++|.+.....  ++..+.. .++|++|++++|.+.+...
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            4444 777888888777765554333    34 477788888777764210  1222323 3577778887777654322


Q ss_pred             hHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCC-------cc
Q 043523          507 QKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIP-------EE  579 (650)
Q Consensus       507 ~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-------~~  579 (650)
                      ....                                           ......+.|+.|++++|.+.++..       ..
T Consensus       243 ~~l~-------------------------------------------~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~  279 (362)
T 3goz_A          243 ENLK-------------------------------------------LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA  279 (362)
T ss_dssp             HHHH-------------------------------------------HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTT
T ss_pred             HHHH-------------------------------------------HHHhcCCCccEEEeccCCccccCHHHHHHHHHH
Confidence            1110                                           112345667777777777443332       24


Q ss_pred             ccCCcCCCEEeCccccCccc
Q 043523          580 MGRFKSLYALNMSHNALTGS  599 (650)
Q Consensus       580 ~~~l~~L~~L~ls~n~i~~~  599 (650)
                      +..+++|++|++++|++.+.
T Consensus       280 ~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          280 FPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             STTCCEEEEECTTSCBCCGG
T ss_pred             hccCCceEEEecCCCcCCCc
Confidence            55667777777877777654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2.5e-21  Score=182.12  Aligned_cols=197  Identities=17%  Similarity=0.152  Sum_probs=160.0

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCc-cccccchhcccCCCCCEEeCCC-CccccccchhhhcCCCCCeE
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ-LQGVVPKSLANCNMLQVLDLKN-NHISDNFPCWLGNASSLQVL  468 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~-i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~L~~L  468 (650)
                      ++++|++++|++. .++...|..+++|++|++++|+ ++...+.+|..+++|++|++++ |++..+.+..|.++++|++|
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            7888888888887 5555568889999999999996 8867777889999999999998 88988777788889999999


Q ss_pred             EccCcccceecCCCCCCCCCCCCC---eeeCCCc-ccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecce
Q 043523          469 VLQSNNFSGHISCPRNNVSWPLLQ---IVDLASN-KFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGV  544 (650)
Q Consensus       469 ~l~~n~~~~~~~~~~~~~~~~~L~---~L~l~~n-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~  544 (650)
                      ++++|+++..   +. +..+++|+   +|++++| .+....                                       
T Consensus       111 ~l~~n~l~~l---p~-~~~l~~L~~L~~L~l~~N~~l~~i~---------------------------------------  147 (239)
T 2xwt_C          111 GIFNTGLKMF---PD-LTKVYSTDIFFILEITDNPYMTSIP---------------------------------------  147 (239)
T ss_dssp             EEEEECCCSC---CC-CTTCCBCCSEEEEEEESCTTCCEEC---------------------------------------
T ss_pred             eCCCCCCccc---cc-cccccccccccEEECCCCcchhhcC---------------------------------------
Confidence            9999988753   33 67777887   9999998 654211                                       


Q ss_pred             EEeeccchhhcccCCCccc-EEeCCCCccccCCCccccCCcCCCEEeCcccc-CcccCCcCccCC-CCCCeeeCCCCcCC
Q 043523          545 TVTVKGVETMLLKVPNIFT-SIDFSSNNFEGPIPEEMGRFKSLYALNMSHNA-LTGSIPSSFGNL-KQIESLDLSMNNLS  621 (650)
Q Consensus       545 ~~~~~~~~~~~~~~~~~l~-~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~-i~~~~~~~~~~l-~~L~~L~l~~n~i~  621 (650)
                              ...+..++.|+ .|++++|.+..+....+.. ++|++|++++|+ +++..+.+|..+ ++|++|++++|+++
T Consensus       148 --------~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          148 --------VNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             --------TTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             --------cccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence                    12234678888 9999999998666666666 899999999995 997778889999 99999999999999


Q ss_pred             ccCCccccCCCCCCeEEccCCc
Q 043523          622 GKIPAQLASLNFLSVLNLSYNN  643 (650)
Q Consensus       622 ~~~~~~l~~l~~L~~L~l~~n~  643 (650)
                      +.++.   .+++|+.|+++++.
T Consensus       219 ~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          219 ALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             CCCCT---TCTTCSEEECTTC-
T ss_pred             cCChh---HhccCceeeccCcc
Confidence            76554   67889999999875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=3.2e-22  Score=199.14  Aligned_cols=176  Identities=19%  Similarity=0.240  Sum_probs=88.5

Q ss_pred             CccEEecCCCcCCCCchhhhhcc--CCccEEEccCCcccccccccccCCCcccEEECcCcccccc-CChhhhhccccCcc
Q 043523          317 NTSYVDYSNNHFTFIPADIGNFM--SETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGT-IPACLIAQSETTLG  393 (650)
Q Consensus       317 ~L~~L~l~~~~i~~~~~~~~~~~--~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~  393 (650)
                      .++.++++++.+.  + ......  +.++.++++++.+.+..+. +..+++|+.|++++|.+.+. ++..+...  ++|+
T Consensus        48 ~~~~l~l~~~~~~--~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~--~~L~  121 (336)
T 2ast_B           48 LWQTLDLTGKNLH--P-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQC--SKLQ  121 (336)
T ss_dssp             TSSEEECTTCBCC--H-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTB--CCCS
T ss_pred             hheeeccccccCC--H-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhC--CCCC
Confidence            4667777776665  2 222223  6677777777666655443 44566666666666665433 33332222  2555


Q ss_pred             EEEccCccCCCcCCCcccCCCCCccEEEcCCC-ccccc-cchhcccCCCCCEEeCCCC-ccccc-cchhhhcCC-CCCeE
Q 043523          394 VLNLGRNNLNGTLSDTIFPRNCGLQILDLGGN-QLQGV-VPKSLANCNMLQVLDLKNN-HISDN-FPCWLGNAS-SLQVL  468 (650)
Q Consensus       394 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~-~i~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~~~-~L~~L  468 (650)
                      +|++++|.+.+..+.. +..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|
T Consensus       122 ~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L  200 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  200 (336)
T ss_dssp             EEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             EEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence            5555555554333332 444555555555555 34432 3334455555555555555 55442 234444555 55555


Q ss_pred             EccCcc--cceecCCCCCCCCCCCCCeeeCCCcc
Q 043523          469 VLQSNN--FSGHISCPRNNVSWPLLQIVDLASNK  500 (650)
Q Consensus       469 ~l~~n~--~~~~~~~~~~~~~~~~L~~L~l~~n~  500 (650)
                      ++++|.  ++.. .++..+..+++|++|++++|.
T Consensus       201 ~l~~~~~~~~~~-~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          201 NLSGYRKNLQKS-DLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             ECCSCGGGSCHH-HHHHHHHHCTTCSEEECTTCT
T ss_pred             EeCCCcccCCHH-HHHHHHhhCCCCCEEeCCCCC
Confidence            555553  2210 112233344555555555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.8e-20  Score=183.04  Aligned_cols=189  Identities=19%  Similarity=0.254  Sum_probs=93.9

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL  470 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  470 (650)
                      +|++|++++|.+. .++  .+..+++|++|++++|.+.+..+  +..+++|++|++++|++.+.  ..+..+++|++|++
T Consensus        42 ~L~~L~l~~~~i~-~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l  114 (308)
T 1h6u_A           42 GITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL  114 (308)
T ss_dssp             TCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred             CcCEEEeeCCCcc-Cch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence            4455555555444 222  14445555555555555543322  45555555555555555442  23445555555555


Q ss_pred             cCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeecc
Q 043523          471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKG  550 (650)
Q Consensus       471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  550 (650)
                      ++|.++...    .+..+++|++|++++|.+....+                                            
T Consensus       115 ~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~--------------------------------------------  146 (308)
T 1h6u_A          115 TSTQITDVT----PLAGLSNLQVLYLDLNQITNISP--------------------------------------------  146 (308)
T ss_dssp             TTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG--------------------------------------------
T ss_pred             CCCCCCCch----hhcCCCCCCEEECCCCccCcCcc--------------------------------------------
Confidence            555554321    24445555555555554432110                                            


Q ss_pred             chhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccC
Q 043523          551 VETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS  630 (650)
Q Consensus       551 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~  630 (650)
                           +..++.|+.|++++|.+.+..+  +..+++|+.|++++|++++..+  +..+++|++|++++|++++..+  +..
T Consensus       147 -----l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~  215 (308)
T 1h6u_A          147 -----LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LAN  215 (308)
T ss_dssp             -----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTT
T ss_pred             -----ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccC
Confidence                 1234455555555555554322  5555566666666666553322  4555666666666666654432  555


Q ss_pred             CCCCCeEEccCCcCc
Q 043523          631 LNFLSVLNLSYNNLV  645 (650)
Q Consensus       631 l~~L~~L~l~~n~~~  645 (650)
                      +++|+.|++++|+++
T Consensus       216 l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          216 TSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CTTCCEEEEEEEEEE
T ss_pred             CCCCCEEEccCCeee
Confidence            666666666666554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=6.5e-20  Score=173.64  Aligned_cols=191  Identities=22%  Similarity=0.235  Sum_probs=158.8

Q ss_pred             CccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEE
Q 043523          317 NTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLN  396 (650)
Q Consensus       317 ~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  396 (650)
                      ..+.++++++.++.+|..+   .+.++.+++++|.+.+..+..+..+++|+.|++++|.+.+..+..+....  +|++|+
T Consensus        15 ~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~   89 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT--ELGTLG   89 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT--TCCEEE
T ss_pred             CCeEEecCCCCccccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC--cCCEEE
Confidence            4566777777777777665   36788888888888887777888888899999999888866555554443  899999


Q ss_pred             ccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccc
Q 043523          397 LGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS  476 (650)
Q Consensus       397 l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  476 (650)
                      +++|.+. .++...|..+++|++|++++|++++..+..|..+++|++|+|++|++..+.+..|..+++|++|++++|+++
T Consensus        90 L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A           90 LANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            9999988 566666899999999999999999777777899999999999999999977778999999999999999998


Q ss_pred             eecCCCCCCCCCCCCCeeeCCCcccccc-cChHHHHhHHh
Q 043523          477 GHISCPRNNVSWPLLQIVDLASNKFSGR-LSQKWLLTMEE  515 (650)
Q Consensus       477 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~l~~  515 (650)
                      ...  +..+..+++|++|++++|++.+. +...++..+..
T Consensus       169 ~~~--~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~  206 (251)
T 3m19_A          169 SVP--HGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIR  206 (251)
T ss_dssp             CCC--TTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHH
T ss_pred             ccC--HHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHH
Confidence            654  55788899999999999999988 77777766654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=8.7e-21  Score=188.76  Aligned_cols=255  Identities=15%  Similarity=0.157  Sum_probs=190.4

Q ss_pred             cCCccEEEccCCcccccccccccCC--CcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCC
Q 043523          339 MSETEYFFAANNSLVGVIPESVCKG--IYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCG  416 (650)
Q Consensus       339 ~~~l~~l~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~  416 (650)
                      ...++.++++++.+.   +..+..+  ++++.+++++|.+.+..+..+   ..++|++|++++|.+.+......+..+++
T Consensus        46 ~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~---~~~~L~~L~L~~~~l~~~~~~~~~~~~~~  119 (336)
T 2ast_B           46 ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHF---SPFRVQHMDLSNSVIEVSTLHGILSQCSK  119 (336)
T ss_dssp             STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCC---CCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred             chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhc---cCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence            345788999888766   3445555  788999999998886655532   23589999999998775423344788899


Q ss_pred             ccEEEcCCCccccccchhcccCCCCCEEeCCCC-ccccc-cchhhhcCCCCCeEEccCc-ccceecCCCCCCCCCC-CCC
Q 043523          417 LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNN-HISDN-FPCWLGNASSLQVLVLQSN-NFSGHISCPRNNVSWP-LLQ  492 (650)
Q Consensus       417 L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~~-~L~  492 (650)
                      |++|++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .++... ++..+..++ +|+
T Consensus       120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~l~~~L~  198 (336)
T 2ast_B          120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH-VQVAVAHVSETIT  198 (336)
T ss_dssp             CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH-HHHHHHHSCTTCC
T ss_pred             CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH-HHHHHHhcccCCC
Confidence            999999999988778888888999999999999 67752 5666788999999999999 776421 144566788 999


Q ss_pred             eeeCCCcc--cccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCC
Q 043523          493 IVDLASNK--FSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSN  570 (650)
Q Consensus       493 ~L~l~~n~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~  570 (650)
                      +|++++|.  ++..    .+                                          ......+++|++|++++|
T Consensus       199 ~L~l~~~~~~~~~~----~l------------------------------------------~~~~~~~~~L~~L~l~~~  232 (336)
T 2ast_B          199 QLNLSGYRKNLQKS----DL------------------------------------------STLVRRCPNLVHLDLSDS  232 (336)
T ss_dssp             EEECCSCGGGSCHH----HH------------------------------------------HHHHHHCTTCSEEECTTC
T ss_pred             EEEeCCCcccCCHH----HH------------------------------------------HHHHhhCCCCCEEeCCCC
Confidence            99999984  3210    00                                          011135789999999999


Q ss_pred             c-cccCCCccccCCcCCCEEeCcccc-CcccCCcCccCCCCCCeeeCCCCcCCccCCccccCC-CCCCeEEccCCcCccc
Q 043523          571 N-FEGPIPEEMGRFKSLYALNMSHNA-LTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL-NFLSVLNLSYNNLVGK  647 (650)
Q Consensus       571 ~-~~~~~~~~~~~l~~L~~L~ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~l~~n~~~~~  647 (650)
                      . +++..+..+..+++|++|++++|. ++......++.+++|++|++++| ++   .+.+..+ .++..|++++|.+++.
T Consensus       233 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~  308 (336)
T 2ast_B          233 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTI  308 (336)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCT
T ss_pred             CcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccc
Confidence            9 666677788999999999999994 54444446888999999999999 44   3344444 3467777999999998


Q ss_pred             CCC
Q 043523          648 IPT  650 (650)
Q Consensus       648 ~p~  650 (650)
                      .|.
T Consensus       309 ~~~  311 (336)
T 2ast_B          309 ARP  311 (336)
T ss_dssp             TCS
T ss_pred             cCC
Confidence            874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=2e-21  Score=197.03  Aligned_cols=255  Identities=14%  Similarity=0.128  Sum_probs=184.0

Q ss_pred             CCcCCCCchhhhhccCCccEEEccCCcccccccc----cccCCCcccEEECcCccc---cccCChhhh-----hccccCc
Q 043523          325 NNHFTFIPADIGNFMSETEYFFAANNSLVGVIPE----SVCKGIYFQVLDLSNNNL---SGTIPACLI-----AQSETTL  392 (650)
Q Consensus       325 ~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~---~~~~~~~~~-----~~~~~~L  392 (650)
                      ...+..+...+. .++.++.+++++|.+....+.    .+..+++|+.|++++|.+   .+.+|..+.     ....++|
T Consensus        18 ~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L   96 (386)
T 2ca6_A           18 TEDEKSVFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL   96 (386)
T ss_dssp             SHHHHTTSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHh-cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc
Confidence            333444444443 377899999999988776443    466889999999998744   344454431     1233599


Q ss_pred             cEEEccCccCCCc----CCCcccCCCCCccEEEcCCCccccccchhc----ccC---------CCCCEEeCCCCcccc-c
Q 043523          393 GVLNLGRNNLNGT----LSDTIFPRNCGLQILDLGGNQLQGVVPKSL----ANC---------NMLQVLDLKNNHISD-N  454 (650)
Q Consensus       393 ~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~----~~l---------~~L~~L~Ls~n~l~~-~  454 (650)
                      ++|++++|.+.+.    ++. .+..+++|++|++++|.+....+..+    ..+         ++|++|++++|++.+ .
T Consensus        97 ~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~  175 (386)
T 2ca6_A           97 HTVRLSDNAFGPTAQEPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS  175 (386)
T ss_dssp             CEEECCSCCCCTTTHHHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred             cEEECCCCcCCHHHHHHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence            9999999998852    333 36788999999999999875544443    344         899999999999974 2


Q ss_pred             cc---hhhhcCCCCCeEEccCcccceec--CC-CCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccc
Q 043523          455 FP---CWLGNASSLQVLVLQSNNFSGHI--SC-PRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELK  528 (650)
Q Consensus       455 ~~---~~~~~~~~L~~L~l~~n~~~~~~--~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  528 (650)
                      .+   ..+..+++|++|++++|.+....  .+ +..+..+++|++|++++|.++.......                   
T Consensus       176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l-------------------  236 (386)
T 2ca6_A          176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL-------------------  236 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH-------------------
T ss_pred             HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH-------------------
Confidence            33   36678999999999999987321  11 2267788999999999998753111100                   


Q ss_pred             cceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccC----CCcccc--CCcCCCEEeCccccCcc----
Q 043523          529 HLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGP----IPEEMG--RFKSLYALNMSHNALTG----  598 (650)
Q Consensus       529 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~----~~~~~~--~l~~L~~L~ls~n~i~~----  598 (650)
                                              ...+..+++|++|++++|.+.+.    .+..+.  .+++|+.|+|++|.+++    
T Consensus       237 ------------------------~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~  292 (386)
T 2ca6_A          237 ------------------------AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR  292 (386)
T ss_dssp             ------------------------HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred             ------------------------HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence                                    01123578899999999998765    334553  38999999999999997    


Q ss_pred             cCCcCc-cCCCCCCeeeCCCCcCCccC
Q 043523          599 SIPSSF-GNLKQIESLDLSMNNLSGKI  624 (650)
Q Consensus       599 ~~~~~~-~~l~~L~~L~l~~n~i~~~~  624 (650)
                      .++.++ .++++|++|++++|.+++..
T Consensus       293 ~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          293 TLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHHhcCCCceEEEccCCcCCcch
Confidence            477776 66899999999999999766

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.82  E-value=4.9e-20  Score=180.52  Aligned_cols=227  Identities=21%  Similarity=0.179  Sum_probs=153.4

Q ss_pred             CCCCEEeCCCCCCCCCCCCC---CCCCCcccEEEccCCcCcCCCCCCC--CCCCCCcEEEcCCCccccCCC----cCccC
Q 043523           21 PTLETLDLSENQLLQGSLPN---FPKNSSLRNLILSGTGFSGTLPDSI--GNLENLTWVEVRRCNFTGPIP----PSMAN   91 (650)
Q Consensus        21 ~~L~~L~ls~~~i~~~~~~~---~~~l~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~L~~~~l~~~~~----~~l~~   91 (650)
                      ..++.+.+.++.+.......   +..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            34677777777654322221   1224568888888888877777776  778888888888888875444    34456


Q ss_pred             CCCCcEEEccCCcccccCC-ccccCCCcCEEeCCCCcCccc---CChHHHhccccCCeEEccCCcCCCCcch---hccCC
Q 043523           92 LTQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGG---ISSTFWEQLVNLNLVLLSHNSLNGSIPR---SLFLL  164 (650)
Q Consensus        92 l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l  164 (650)
                      +++|++|++++|.+...++ .+..+++|++|++++|.+.+.   ....++..+++|++|++++|.++.....   .+..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            7888888888888876654 556778888888888876531   1122235677888888888887632211   24567


Q ss_pred             CCCCEEEccCCcCCCCCchhhh--cCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCC
Q 043523          165 PNLETLWLSNNQFENQLPEISN--VSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPI  242 (650)
Q Consensus       165 ~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~  242 (650)
                      ++|++|++++|.+....+....  ..+++|++|++++|.+. .+|..++   ++|+.|++++|+++.+          +.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l~~~----------~~  289 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRLNRA----------PQ  289 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCCCSC----------CC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcCCCC----------ch
Confidence            8888888888887755332221  12367888888888887 6676552   7888888888887633          22


Q ss_pred             CCCCCCCcEEEccCCcCCC
Q 043523          243 LKNQSQLSGLDISNNQIPG  261 (650)
Q Consensus       243 l~~~~~L~~L~l~~~~i~~  261 (650)
                      +..+++|+.|++++|.+.+
T Consensus       290 ~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          290 PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             TTSCCCCSCEECSSTTTSC
T ss_pred             hhhCCCccEEECcCCCCCC
Confidence            5567888888888888764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=5.1e-20  Score=173.13  Aligned_cols=195  Identities=20%  Similarity=0.187  Sum_probs=111.3

Q ss_pred             cccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCc-cccCCCcCccCCCCCcEEEccC-CcccccCC-ccccCCCcCEEe
Q 043523           46 SLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN-FTGPIPPSMANLTQLFHMDFSS-NHFSGHIP-SLHKSRNLKYLD  122 (650)
Q Consensus        46 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~l~~-~~i~~~~~-~~~~~~~L~~L~  122 (650)
                      ++++|++++|.+++..+..|.++++|++|++++|+ ++...+.+|.++++|++|++++ |.++..++ .+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            45555555555554444455555555555555554 5444444555555555555555 55554443 334455555555


Q ss_pred             CCCCcCcccCChHHHhccccCC---eEEccCC-cCCCCcchhccCCCCCC-EEEccCCcCCCCCchhhhcCCCCccEEEc
Q 043523          123 LSFNNLSGGISSTFWEQLVNLN---LVLLSHN-SLNGSIPRSLFLLPNLE-TLWLSNNQFENQLPEISNVSSSVLFDLDL  197 (650)
Q Consensus       123 l~~~~l~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  197 (650)
                      +++|.+++ ++.  +..+++|+   +|++++| .++...+..+..+++|+ .+++++|.+. .++...... .+|+.+++
T Consensus       112 l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L  186 (239)
T 2xwt_C          112 IFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYL  186 (239)
T ss_dssp             EEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEEC
T ss_pred             CCCCCCcc-ccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEc
Confidence            55555543 332  44555555   6666666 55544445566666666 6666666665 333322222 56777777


Q ss_pred             cCCc-CCCCCchhHhhcC-CCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCC
Q 043523          198 SGNR-LEGPVPISIIFEL-RNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNN  257 (650)
Q Consensus       198 ~~~~-l~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~  257 (650)
                      ++|+ +. .++...|..+ ++|+.|++++|+++.++.           ..+++|+.|+++++
T Consensus       187 ~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~-----------~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          187 NKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPS-----------KGLEHLKELIARNT  236 (239)
T ss_dssp             TTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCC-----------TTCTTCSEEECTTC
T ss_pred             CCCCCcc-cCCHHHhhccccCCcEEECCCCccccCCh-----------hHhccCceeeccCc
Confidence            7774 66 5555556777 788888888887764321           13567778877765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=2e-19  Score=175.47  Aligned_cols=194  Identities=20%  Similarity=0.279  Sum_probs=126.4

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCc
Q 043523           17 ILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLF   96 (650)
Q Consensus        17 ~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~   96 (650)
                      +.++++|+.|+++++.+...  +.+..+++|++|++++|.+.+. +. +..+++|++|++++|.+++ . ..+.++++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCC
Confidence            45677888888888877443  4677778888888888877743 33 7778888888888887763 2 3577778888


Q ss_pred             EEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCc
Q 043523           97 HMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQ  176 (650)
Q Consensus        97 ~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  176 (650)
                      +|++++|.+...+ .+..+++|++|++++|.+++. +.  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.
T Consensus       111 ~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~-~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          111 TLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNI-SP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCC-GG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCch-hhcCCCCCCEEECCCCccCcC-cc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence            8888888777543 466777778888877777632 22  5677777777777777765433  6667777777777776


Q ss_pred             CCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccc
Q 043523          177 FENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFS  228 (650)
Q Consensus       177 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~  228 (650)
                      +....+   ...+++|++|++++|.+.+ ++.  +..+++|+.|++++|+++
T Consensus       185 l~~~~~---l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          185 ISDISP---LASLPNLIEVHLKNNQISD-VSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCCCGG---GGGCTTCCEEECTTSCCCB-CGG--GTTCTTCCEEEEEEEEEE
T ss_pred             cCcChh---hcCCCCCCEEEccCCccCc-ccc--ccCCCCCCEEEccCCeee
Confidence            653222   2234555555555555552 221  245555555555555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=1.8e-18  Score=172.39  Aligned_cols=241  Identities=17%  Similarity=0.104  Sum_probs=130.6

Q ss_pred             cEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEcc
Q 043523          319 SYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLG  398 (650)
Q Consensus       319 ~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  398 (650)
                      +.++.++++++.+|..+   ++++++|++++|.+....+..|.++++|+.|++++|.+.                     
T Consensus        12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~---------------------   67 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL---------------------   67 (350)
T ss_dssp             TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC---------------------
T ss_pred             CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC---------------------
Confidence            45666777777777654   345666666666666544445555555555555555543                     


Q ss_pred             CccCCCcCCCcccCCCCCccE-EEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCc-ccc
Q 043523          399 RNNLNGTLSDTIFPRNCGLQI-LDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSN-NFS  476 (650)
Q Consensus       399 ~~~~~~~~~~~~~~~l~~L~~-L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n-~~~  476 (650)
                           +.++...|..++++.+ +.+.+|+++...+++|..+++|++|++++|++....+..+....++..|++.++ .+.
T Consensus        68 -----~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~  142 (350)
T 4ay9_X           68 -----EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH  142 (350)
T ss_dssp             -----CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC
T ss_pred             -----CccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc
Confidence                 3344444555555443 333445555455555555666666666666655544444444555555555442 333


Q ss_pred             eecCCCCCCCCC-CCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhc
Q 043523          477 GHISCPRNNVSW-PLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETML  555 (650)
Q Consensus       477 ~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  555 (650)
                      ...  ...+..+ ..++.|++++|.++...+.                                               .
T Consensus       143 ~l~--~~~f~~~~~~l~~L~L~~N~i~~i~~~-----------------------------------------------~  173 (350)
T 4ay9_X          143 TIE--RNSFVGLSFESVILWLNKNGIQEIHNS-----------------------------------------------A  173 (350)
T ss_dssp             EEC--TTSSTTSBSSCEEEECCSSCCCEECTT-----------------------------------------------S
T ss_pred             ccc--ccchhhcchhhhhhccccccccCCChh-----------------------------------------------h
Confidence            322  2223333 2455566666654321110                                               0


Q ss_pred             ccCCCcccEEeCCC-CccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCC
Q 043523          556 LKVPNIFTSIDFSS-NNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFL  634 (650)
Q Consensus       556 ~~~~~~l~~L~l~~-~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L  634 (650)
                      + ..+.++++++.+ |.+..+...+|..+++|++|++++|+|+...+.+|   .+|+.|.+.++.-...+| .+.++++|
T Consensus       174 f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L  248 (350)
T 4ay9_X          174 F-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVAL  248 (350)
T ss_dssp             S-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSC
T ss_pred             c-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-CchhCcCh
Confidence            0 224556666653 55555555667777888888888888775444443   444555544443333444 37777778


Q ss_pred             CeEEccCC
Q 043523          635 SVLNLSYN  642 (650)
Q Consensus       635 ~~L~l~~n  642 (650)
                      +.++++++
T Consensus       249 ~~l~l~~~  256 (350)
T 4ay9_X          249 MEASLTYP  256 (350)
T ss_dssp             CEEECSCH
T ss_pred             hhCcCCCC
Confidence            88777653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=1.4e-18  Score=159.51  Aligned_cols=107  Identities=23%  Similarity=0.273  Sum_probs=51.8

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL  470 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  470 (650)
                      ++++|++++|.+. .++...|..+++|++|++++|++++..+..|..+++|++|++++|++..+.+..+..+++|++|++
T Consensus        29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            4555555555554 333333455555555555555555444444455555555555555555444444445555555555


Q ss_pred             cCcccceecCCCCCCCCCCCCCeeeCCCcc
Q 043523          471 QSNNFSGHISCPRNNVSWPLLQIVDLASNK  500 (650)
Q Consensus       471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~  500 (650)
                      ++|.++...  ...+..+++|++|++++|.
T Consensus       108 ~~N~l~~~~--~~~~~~l~~L~~L~l~~N~  135 (208)
T 2o6s_A          108 NTNQLQSLP--DGVFDKLTQLKDLRLYQNQ  135 (208)
T ss_dssp             CSSCCCCCC--TTTTTTCTTCCEEECCSSC
T ss_pred             CCCcCcccC--HhHhccCCcCCEEECCCCc
Confidence            555544322  2223344444444444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=1.2e-18  Score=173.74  Aligned_cols=198  Identities=21%  Similarity=0.197  Sum_probs=102.3

Q ss_pred             cCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCC-CCCCCCCCCcE-EEcCCCcc
Q 043523            4 LSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLP-DSIGNLENLTW-VEVRRCNF   81 (650)
Q Consensus         4 l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~-L~L~~~~l   81 (650)
                      -++++++ .+|..+  .+++++|+|++|+|+.....+|.++++|++|+|++|.+.+.++ .+|.++++++. +.+++|++
T Consensus        16 C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l   92 (350)
T 4ay9_X           16 CQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL   92 (350)
T ss_dssp             EESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred             ecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence            3445555 344433  2456666666666655555566666666666666666543333 45566666553 44455666


Q ss_pred             ccCCCcCccCCCCCcEEEccCCcccccCC-ccccCCCcCEEeCCCC-cCcccCChHHHhcc-ccCCeEEccCCcCCCCcc
Q 043523           82 TGPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFN-NLSGGISSTFWEQL-VNLNLVLLSHNSLNGSIP  158 (650)
Q Consensus        82 ~~~~~~~l~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~  158 (650)
                      +...|.+|.++++|++|++++|++...++ .+....++..+++.++ .+. .++...+..+ ..++.|++++|+++.. +
T Consensus        93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~~i-~  170 (350)
T 4ay9_X           93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQEI-H  170 (350)
T ss_dssp             CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCEE-C
T ss_pred             cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccccCC-C
Confidence            65556666666666666666666654443 2233455555665442 333 2222223333 2455566666655532 2


Q ss_pred             hhccCCCCCCEEEccC-CcCCCCCchhhhcCCCCccEEEccCCcCCCCCch
Q 043523          159 RSLFLLPNLETLWLSN-NQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPI  208 (650)
Q Consensus       159 ~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  208 (650)
                      .......+++.+++.+ |.+. .++...+..+++|+.|++++|++. .+|.
T Consensus       171 ~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~  219 (350)
T 4ay9_X          171 NSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPS  219 (350)
T ss_dssp             TTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCS
T ss_pred             hhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccCh
Confidence            2222334555555543 2232 333333334455555555555555 4443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2.9e-18  Score=165.65  Aligned_cols=168  Identities=22%  Similarity=0.320  Sum_probs=103.1

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL  470 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  470 (650)
                      +|++|++++|.+. .++.  +..+++|++|++++|++++..+  +..+++|++|++++|++.+.  ..+..+++|++|++
T Consensus        47 ~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L  119 (291)
T 1h6t_A           47 SIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSL  119 (291)
T ss_dssp             TCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEEC
T ss_pred             cccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEEC
Confidence            7777888777766 3332  6667777777777777775443  77777777777777777762  23667777777777


Q ss_pred             cCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeecc
Q 043523          471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKG  550 (650)
Q Consensus       471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  550 (650)
                      ++|.+...    ..+..+++|+.|++++|.+...                                              
T Consensus       120 ~~n~i~~~----~~l~~l~~L~~L~l~~n~l~~~----------------------------------------------  149 (291)
T 1h6t_A          120 EHNGISDI----NGLVHLPQLESLYLGNNKITDI----------------------------------------------  149 (291)
T ss_dssp             TTSCCCCC----GGGGGCTTCCEEECCSSCCCCC----------------------------------------------
T ss_pred             CCCcCCCC----hhhcCCCCCCEEEccCCcCCcc----------------------------------------------
Confidence            77776542    2455566677777766655421                                              


Q ss_pred             chhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCc
Q 043523          551 VETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG  622 (650)
Q Consensus       551 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~  622 (650)
                         ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+++. + .+..+++|+.|++++|.++.
T Consensus       150 ---~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          150 ---TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             ---GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             ---hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence               001234555666666666554433  55556666666666666532 2 25555666666666665554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=5.3e-18  Score=155.53  Aligned_cols=109  Identities=25%  Similarity=0.271  Sum_probs=76.2

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL  470 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  470 (650)
                      +|++|++++|++. .++...|..+++|++|++++|++++..+..+..+++|++|++++|++....+..+..+++|++|++
T Consensus        53 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  131 (208)
T 2o6s_A           53 SLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL  131 (208)
T ss_dssp             TCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence            5555555555555 444445677778888888888877666666777888888888888887766666777888888888


Q ss_pred             cCcccceecCCCCCCCCCCCCCeeeCCCcccc
Q 043523          471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFS  502 (650)
Q Consensus       471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  502 (650)
                      ++|.+++..  ...+..+++|++|++++|++.
T Consensus       132 ~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          132 YQNQLKSVP--DGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CSSCCSCCC--TTTTTTCTTCCEEECCSCCBC
T ss_pred             CCCccceeC--HHHhccCCCccEEEecCCCee
Confidence            888776543  344566777777777777553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=9.9e-18  Score=154.60  Aligned_cols=80  Identities=24%  Similarity=0.375  Sum_probs=45.9

Q ss_pred             cEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccC
Q 043523          393 GVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQS  472 (650)
Q Consensus       393 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~  472 (650)
                      +.++++++.+. .+|.. +.  +++++|++++|++++..+..|..+++|++|+|++|++..+.+..|.++++|++|+|++
T Consensus        14 ~~v~c~~~~l~-~iP~~-l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTN-LP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSS-CC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCc-cC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            45666666655 44443 11  3566666666666655555566666666666666666655555555555555555555


Q ss_pred             cccc
Q 043523          473 NNFS  476 (650)
Q Consensus       473 n~~~  476 (650)
                      |+++
T Consensus        90 N~l~   93 (220)
T 2v9t_B           90 NKIT   93 (220)
T ss_dssp             SCCC
T ss_pred             CcCC
Confidence            5554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=1.3e-17  Score=153.87  Aligned_cols=164  Identities=21%  Similarity=0.211  Sum_probs=120.9

Q ss_pred             cEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEcc
Q 043523          319 SYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLG  398 (650)
Q Consensus       319 ~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  398 (650)
                      +.+++++++++.+|..+   .+.++.+++++|.+.+..+..+..+++                          |++|+++
T Consensus        14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~--------------------------L~~L~Ls   64 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKK--------------------------LRRIDLS   64 (220)
T ss_dssp             TEEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTT--------------------------CCEEECC
T ss_pred             CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCC--------------------------CCEEECC
Confidence            46677777777766654   245566666666555544444444444                          4555555


Q ss_pred             CccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCccccee
Q 043523          399 RNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGH  478 (650)
Q Consensus       399 ~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  478 (650)
                      +|.+. .+....|..+++|++|++++|+++...+..|..+++|++|+|++|++..+.+..|..+++|++|++++|++++.
T Consensus        65 ~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  143 (220)
T 2v9t_B           65 NNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI  143 (220)
T ss_dssp             SSCCC-EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcCC-CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE
Confidence            55544 33333477888888888888888866666778888999999999999888788888899999999999998866


Q ss_pred             cCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHH
Q 043523          479 ISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTME  514 (650)
Q Consensus       479 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~  514 (650)
                      .  ...+..+++|++|++++|++.|.+...|+..+.
T Consensus       144 ~--~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l  177 (220)
T 2v9t_B          144 A--KGTFSPLRAIQTMHLAQNPFICDCHLKWLADYL  177 (220)
T ss_dssp             C--TTTTTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred             C--HHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHH
Confidence            5  556778899999999999999999999987653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=1.4e-17  Score=153.53  Aligned_cols=165  Identities=23%  Similarity=0.231  Sum_probs=125.3

Q ss_pred             cEEecCCCcCCCCchhhhhccCCccEEEccCCccccccc-ccccCCCcccEEECcCccccccCChhhhhccccCccEEEc
Q 043523          319 SYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIP-ESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNL  397 (650)
Q Consensus       319 ~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  397 (650)
                      +.++++++.++.+|..+   ...++.+++++|.+.+..+ ..+..++                          +|++|++
T Consensus        14 ~~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~--------------------------~L~~L~L   64 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLP--------------------------QLRKINF   64 (220)
T ss_dssp             TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCT--------------------------TCCEEEC
T ss_pred             CEeEeCCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCC--------------------------CCCEEEC
Confidence            46666666666666543   2334455555554444322 1223333                          6666666


Q ss_pred             cCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccce
Q 043523          398 GRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSG  477 (650)
Q Consensus       398 ~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~  477 (650)
                      ++|.+. .++...|..+++|++|++++|.+++..+..|..+++|++|+|++|++..+.+..|..+++|++|++++|.+++
T Consensus        65 ~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  143 (220)
T 2v70_A           65 SNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT  143 (220)
T ss_dssp             CSSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC
T ss_pred             CCCcCC-EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE
Confidence            666665 4445558889999999999999998888889999999999999999999888899999999999999999987


Q ss_pred             ecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHh
Q 043523          478 HISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEE  515 (650)
Q Consensus       478 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~  515 (650)
                      ..  +..+..+++|++|++++|++.|.++..|+..+..
T Consensus       144 ~~--~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~  179 (220)
T 2v70_A          144 VA--PGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR  179 (220)
T ss_dssp             BC--TTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred             EC--HHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence            65  6778889999999999999999999999876654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=8.4e-18  Score=175.81  Aligned_cols=187  Identities=26%  Similarity=0.355  Sum_probs=120.4

Q ss_pred             cccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEE
Q 043523          365 YFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVL  444 (650)
Q Consensus       365 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L  444 (650)
                      +++.|++++|.+.+ +|..+.    ++|++|++++|.+. .++    ..+++|++|++++|.+++ +|. +..  +|++|
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~----~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L  125 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP----PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHL  125 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC----TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEE
T ss_pred             CccEEEeCCCCCCc-cCHhHc----CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEE
Confidence            67788888887764 554332    37788888888777 555    235677788888887775 444 443  77788


Q ss_pred             eCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccC
Q 043523          445 DLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSG  524 (650)
Q Consensus       445 ~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~  524 (650)
                      ++++|++++ +|.   .+++|++|++++|.++..   +.   .+++|++|++++|.++. ++                  
T Consensus       126 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l---p~---~l~~L~~L~Ls~N~L~~-lp------------------  176 (571)
T 3cvr_A          126 DVDNNQLTM-LPE---LPALLEYINADNNQLTML---PE---LPTSLEVLSVRNNQLTF-LP------------------  176 (571)
T ss_dssp             ECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC---CC---CCTTCCEEECCSSCCSC-CC------------------
T ss_pred             ECCCCcCCC-CCC---cCccccEEeCCCCccCcC---CC---cCCCcCEEECCCCCCCC-cc------------------
Confidence            888887777 333   577777777777777642   22   45677777777776542 11                  


Q ss_pred             cccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCC-------CEEeCccccCc
Q 043523          525 SELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSL-------YALNMSHNALT  597 (650)
Q Consensus       525 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L-------~~L~ls~n~i~  597 (650)
                                                  .    ..++|+.|++++|.++.+..  +..  +|       +.|+|++|+|+
T Consensus       177 ----------------------------~----l~~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~  220 (571)
T 3cvr_A          177 ----------------------------E----LPESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENRIT  220 (571)
T ss_dssp             ----------------------------C----CCTTCCEEECCSSCCSSCCC--CC----------CCEEEECCSSCCC
T ss_pred             ----------------------------h----hhCCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCCcce
Confidence                                        0    11566777777777764333  332  55       77777777777


Q ss_pred             ccCCcCccCCCCCCeeeCCCCcCCccCCccccCC
Q 043523          598 GSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL  631 (650)
Q Consensus       598 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l  631 (650)
                       .+|..+..+++|++|++++|.+++..|..+..+
T Consensus       221 -~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          221 -HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             -CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             -ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence             456666667777777777777776666666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1.4e-17  Score=153.64  Aligned_cols=67  Identities=28%  Similarity=0.299  Sum_probs=34.3

Q ss_pred             cccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCc
Q 043523          579 EMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV  645 (650)
Q Consensus       579 ~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  645 (650)
                      .+..+++|++|++++|++++..|..|..+++|++|++++|++++..|..|..+++|+.|++++|++.
T Consensus       100 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          100 MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            3444455555555555555444445555555555555555555444555555555555555555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=7.1e-18  Score=168.70  Aligned_cols=156  Identities=22%  Similarity=0.143  Sum_probs=81.2

Q ss_pred             ccEEEcCCCccccccchhcc-cCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeee
Q 043523          417 LQILDLGGNQLQGVVPKSLA-NCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVD  495 (650)
Q Consensus       417 L~~L~ls~~~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~  495 (650)
                      ++.|++++|++++..+..+. .+++|++|+|++|++..+.+..|..+++|++|+|++|+++...  ...+.++++|++|+
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~  118 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD--EFLFSDLQALEVLL  118 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEE
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCC--HHHhCCCcCCCEEE
Confidence            55555555555544444444 5555555555555555544455555555555555555554432  23333444444444


Q ss_pred             CCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccC
Q 043523          496 LASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGP  575 (650)
Q Consensus       496 l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~  575 (650)
                      +++|.+                                                                       ..+
T Consensus       119 L~~N~i-----------------------------------------------------------------------~~~  127 (361)
T 2xot_A          119 LYNNHI-----------------------------------------------------------------------VVV  127 (361)
T ss_dssp             CCSSCC-----------------------------------------------------------------------CEE
T ss_pred             CCCCcc-----------------------------------------------------------------------cEE
Confidence            444433                                                                       233


Q ss_pred             CCccccCCcCCCEEeCccccCcccCCcCc---cCCCCCCeeeCCCCcCCccCCccccCCCC--CCeEEccCCcCc
Q 043523          576 IPEEMGRFKSLYALNMSHNALTGSIPSSF---GNLKQIESLDLSMNNLSGKIPAQLASLNF--LSVLNLSYNNLV  645 (650)
Q Consensus       576 ~~~~~~~l~~L~~L~ls~n~i~~~~~~~~---~~l~~L~~L~l~~n~i~~~~~~~l~~l~~--L~~L~l~~n~~~  645 (650)
                      .+..+..+++|+.|+|++|+++...+..|   ..+++|++|++++|.++.+++..+..++.  ++.|++++|++.
T Consensus       128 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          128 DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            34445555566666666666654333333   34566666666666666555555555555  356666666553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=3.6e-18  Score=180.85  Aligned_cols=197  Identities=20%  Similarity=0.272  Sum_probs=120.5

Q ss_pred             ccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEe
Q 043523          366 FQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLD  445 (650)
Q Consensus       366 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~  445 (650)
                      +..+.+..+.+.+..+.    ..+..|+.|++++|.+. .++  .+..+++|+.|+|++|.+.+..+  +..+++|++|+
T Consensus        23 l~~l~l~~~~i~~~~~~----~~L~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~   93 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHTTCSCTTSEECH----HHHTTCCCCBCTTCCCC-CCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred             HHHHhccCCCcccccch----hcCCCCCEEECcCCCCC-CCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence            44445555555433332    12236777777777766 333  26667777777777777765443  66777777777


Q ss_pred             CCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCc
Q 043523          446 LKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGS  525 (650)
Q Consensus       446 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~  525 (650)
                      |++|++.+.  ..+..+++|++|+|++|.+...    ..+..+++|+.|+|++|.+...                     
T Consensus        94 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~l---------------------  146 (605)
T 1m9s_A           94 LDENKIKDL--SSLKDLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI---------------------  146 (605)
T ss_dssp             CCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC----GGGGGCTTCSEEECCSSCCCCC---------------------
T ss_pred             CcCCCCCCC--hhhccCCCCCEEEecCCCCCCC----ccccCCCccCEEECCCCccCCc---------------------
Confidence            777777662  2566777777777777776542    3455667777777777765421                     


Q ss_pred             ccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCcc
Q 043523          526 ELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFG  605 (650)
Q Consensus       526 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~  605 (650)
                                                  ..+..++.|+.|+|++|.+.+..+  +..+++|+.|+|++|.+++.  ..+.
T Consensus       147 ----------------------------~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~  194 (605)
T 1m9s_A          147 ----------------------------TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALA  194 (605)
T ss_dssp             ----------------------------GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGT
T ss_pred             ----------------------------hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHc
Confidence                                        011345666777777777665544  66667777777777776643  3466


Q ss_pred             CCCCCCeeeCCCCcCCccCCccccC
Q 043523          606 NLKQIESLDLSMNNLSGKIPAQLAS  630 (650)
Q Consensus       606 ~l~~L~~L~l~~n~i~~~~~~~l~~  630 (650)
                      .+++|+.|++++|.++..+...+..
T Consensus       195 ~l~~L~~L~L~~N~l~~~p~~~~~~  219 (605)
T 1m9s_A          195 GLKNLDVLELFSQECLNKPINHQSN  219 (605)
T ss_dssp             TCTTCSEEECCSEEEECCCCCCCSS
T ss_pred             cCCCCCEEEccCCcCcCCccccccc
Confidence            6777777777777666544433333

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=3.3e-17  Score=152.25  Aligned_cols=82  Identities=21%  Similarity=0.187  Sum_probs=47.2

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL  470 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  470 (650)
                      +.+.++++++.+. .+|....   ++|++|++++|.+++..+..|..+++|++|+|++|++..+.+..|..+++|++|++
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             eCCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            4555666666655 4444311   45666666666666555555666666666666666665544455555566666666


Q ss_pred             cCcccc
Q 043523          471 QSNNFS  476 (650)
Q Consensus       471 ~~n~~~  476 (650)
                      ++|+++
T Consensus        96 s~N~l~  101 (229)
T 3e6j_A           96 GTNQLT  101 (229)
T ss_dssp             CSSCCC
T ss_pred             CCCcCC
Confidence            655554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.2e-17  Score=167.09  Aligned_cols=184  Identities=22%  Similarity=0.201  Sum_probs=147.7

Q ss_pred             cEEecCCCcCCCCchhhhhccCCccEEEccCCccccccccccc-CCCcccEEECcCccccccCChhhhhccccCccEEEc
Q 043523          319 SYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVC-KGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNL  397 (650)
Q Consensus       319 ~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  397 (650)
                      +.+++++++++.+|..+   .+.++.|++++|.+.+..+..+. .+++|+.|++++|.+....+..+....  +|++|++
T Consensus        21 ~~l~c~~~~l~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~--~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP--NLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCSSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT--TCCEEEC
T ss_pred             CEEEeCCCCcCccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC--CCCEEEC
Confidence            56777777777777655   45678888888888877777776 888899999999988865555555443  8999999


Q ss_pred             cCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhh---hcCCCCCeEEccCcc
Q 043523          398 GRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWL---GNASSLQVLVLQSNN  474 (650)
Q Consensus       398 ~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~~~~L~~L~l~~n~  474 (650)
                      ++|.+. .++...|..+++|++|++++|++.+..+..|..+++|++|+|++|++..+.+..|   ..+++|++|+|++|+
T Consensus        96 s~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           96 SSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            999987 5666669999999999999999998888999999999999999999998666666   569999999999999


Q ss_pred             cceecCCCCCCCCCCC--CCeeeCCCcccccccChHHH
Q 043523          475 FSGHISCPRNNVSWPL--LQIVDLASNKFSGRLSQKWL  510 (650)
Q Consensus       475 ~~~~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~~  510 (650)
                      ++...  ...+..++.  ++.|++++|++.|.+...|+
T Consensus       175 l~~l~--~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~  210 (361)
T 2xot_A          175 LKKLP--LTDLQKLPAWVKNGLYLHNNPLECDCKLYQL  210 (361)
T ss_dssp             CCCCC--HHHHHHSCHHHHTTEECCSSCEECCHHHHHH
T ss_pred             CCccC--HHHhhhccHhhcceEEecCCCccCCcCcHHH
Confidence            87543  344556666  48899999999999887664

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=1.9e-17  Score=159.94  Aligned_cols=150  Identities=20%  Similarity=0.334  Sum_probs=88.9

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCc
Q 043523           17 ILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLF   96 (650)
Q Consensus        17 ~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~   96 (650)
                      ++++++|+.|++++|.+...  +.+..+++|++|++++|.+.+.. . +..+++|++|++++|.+++ . ..+.++++|+
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~  115 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK  115 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred             hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence            34566677777777666433  34666667777777776666332 2 6666667777777666653 2 2366666666


Q ss_pred             EEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCc
Q 043523           97 HMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQ  176 (650)
Q Consensus        97 ~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  176 (650)
                      +|++++|.+... +.+..+++|++|++++|.+++.  . .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.
T Consensus       116 ~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          116 SLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--T-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             EEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc--h-hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence            666666666543 4455566666666666666532  2 25566666666666666654432  5555555555555555


Q ss_pred             CC
Q 043523          177 FE  178 (650)
Q Consensus       177 ~~  178 (650)
                      +.
T Consensus       190 i~  191 (291)
T 1h6t_A          190 IS  191 (291)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=2.1e-17  Score=175.01  Aligned_cols=194  Identities=18%  Similarity=0.152  Sum_probs=132.1

Q ss_pred             ccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEE
Q 043523          342 TEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILD  421 (650)
Q Consensus       342 l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  421 (650)
                      +..+.+..+.+.+..  .+..+.+|+.|++++|.+.. ++ .+..  +++|+.|++++|.+.+..+   +..+++|+.|+
T Consensus        23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~--l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~   93 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQY--LPNVTKLFLNGNKLTDIKP---LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGG--CTTCCEEECTTSCCCCCGG---GGGCTTCCEEE
T ss_pred             HHHHhccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHcc--CCCCCEEEeeCCCCCCChh---hccCCCCCEEE
Confidence            333444544444332  24566778888888887763 33 2322  3488888888888774333   77788888888


Q ss_pred             cCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCccc
Q 043523          422 LGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKF  501 (650)
Q Consensus       422 ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~  501 (650)
                      +++|.+.+ + ..+..+++|++|+|++|++.+.  ..+..+++|+.|+|++|.+...    ..+..+++|+.|+|++|.+
T Consensus        94 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l  165 (605)
T 1m9s_A           94 LDENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQI  165 (605)
T ss_dssp             CCSSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC----GGGGSCTTCSEEECCSSCC
T ss_pred             CcCCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc----hhhcccCCCCEEECcCCcC
Confidence            88888774 2 3677788888888888888763  3477788888888888887643    4566778888888888876


Q ss_pred             ccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCcccc
Q 043523          502 SGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMG  581 (650)
Q Consensus       502 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~  581 (650)
                      .+..+                                                 +..++.|+.|+|++|.+.++  ..+.
T Consensus       166 ~~~~~-------------------------------------------------l~~l~~L~~L~Ls~N~i~~l--~~l~  194 (605)
T 1m9s_A          166 SDIVP-------------------------------------------------LAGLTKLQNLYLSKNHISDL--RALA  194 (605)
T ss_dssp             CCCGG-------------------------------------------------GTTCTTCCEEECCSSCCCBC--GGGT
T ss_pred             CCchh-------------------------------------------------hccCCCCCEEECcCCCCCCC--hHHc
Confidence            53222                                                 23567788888888888754  3577


Q ss_pred             CCcCCCEEeCccccCcccCCcC
Q 043523          582 RFKSLYALNMSHNALTGSIPSS  603 (650)
Q Consensus       582 ~l~~L~~L~ls~n~i~~~~~~~  603 (650)
                      .+++|+.|+|++|++++.....
T Consensus       195 ~l~~L~~L~L~~N~l~~~p~~~  216 (605)
T 1m9s_A          195 GLKNLDVLELFSQECLNKPINH  216 (605)
T ss_dssp             TCTTCSEEECCSEEEECCCCCC
T ss_pred             cCCCCCEEEccCCcCcCCcccc
Confidence            7888888888888887543333

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=3.5e-17  Score=148.44  Aligned_cols=153  Identities=14%  Similarity=0.232  Sum_probs=91.9

Q ss_pred             CCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCC
Q 043523          413 RNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQ  492 (650)
Q Consensus       413 ~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~  492 (650)
                      .+++|++|++++|.++ ..+ ++..+++|++|++++|.+..  +..+..+++|++|++++|+++...  +..+..+++|+
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~  115 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDK--IPNLSGLTSLT  115 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGG--SCCCTTCTTCC
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCccc--ChhhcCCCCCC
Confidence            3445666666666665 333 46666666667766665554  234566666777777666665433  33444555555


Q ss_pred             eeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCcc
Q 043523          493 IVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNF  572 (650)
Q Consensus       493 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~  572 (650)
                      +|++++|.++                                                                      
T Consensus       116 ~L~Ls~n~i~----------------------------------------------------------------------  125 (197)
T 4ezg_A          116 LLDISHSAHD----------------------------------------------------------------------  125 (197)
T ss_dssp             EEECCSSBCB----------------------------------------------------------------------
T ss_pred             EEEecCCccC----------------------------------------------------------------------
Confidence            5555555443                                                                      


Q ss_pred             ccCCCccccCCcCCCEEeCcccc-CcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCcc
Q 043523          573 EGPIPEEMGRFKSLYALNMSHNA-LTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG  646 (650)
Q Consensus       573 ~~~~~~~~~~l~~L~~L~ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  646 (650)
                       +..+..+..+++|++|++++|+ +++ .+ .+..+++|++|++++|.+++..  .+..+++|+.|++++|++.+
T Consensus       126 -~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          126 -DSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             -GGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred             -cHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence             3334455666777777777776 553 33 5677777777777777777543  57777777777777777653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=2.4e-16  Score=146.46  Aligned_cols=152  Identities=20%  Similarity=0.216  Sum_probs=114.2

Q ss_pred             CCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccC
Q 043523           23 LETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSS  102 (650)
Q Consensus        23 L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~  102 (650)
                      -+.++.+++.++.... .+.  ++|++|+|++|.+.+..+..|..+++|++|++++|++....+..|.++++|++|++++
T Consensus        21 ~~~v~c~~~~l~~ip~-~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPA-GIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCS-CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCC-CCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            4567777777644432 232  6788888888888766677788888888888888888755556677888888888888


Q ss_pred             CcccccCCc-cccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCC
Q 043523          103 NHFSGHIPS-LHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFEN  179 (650)
Q Consensus       103 ~~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  179 (650)
                      |+++..++. +..+++|++|++++|.++ .++.. +..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            888766654 456788888888888887 55555 5788888888888888887666778888888888888887763

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=2.1e-17  Score=156.99  Aligned_cols=170  Identities=19%  Similarity=0.236  Sum_probs=124.7

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL  470 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  470 (650)
                      +++.++++++.+.+. +  .+..+++|++|++++|+++. .+ ++..+++|++|++++|++.+..+  +..+++|++|++
T Consensus        20 ~l~~l~l~~~~i~~~-~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDL-V--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTTSE-E--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHhcCCCcccc-c--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            677778888887733 3  26778889999999998874 34 68888999999999999888554  788899999999


Q ss_pred             cCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeecc
Q 043523          471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKG  550 (650)
Q Consensus       471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  550 (650)
                      ++|++++..   . +.. ++|++|++++|.+.+..                                             
T Consensus        93 ~~N~l~~l~---~-~~~-~~L~~L~L~~N~l~~~~---------------------------------------------  122 (263)
T 1xeu_A           93 NRNRLKNLN---G-IPS-ACLSRLFLDNNELRDTD---------------------------------------------  122 (263)
T ss_dssp             CSSCCSCCT---T-CCC-SSCCEEECCSSCCSBSG---------------------------------------------
T ss_pred             CCCccCCcC---c-ccc-CcccEEEccCCccCCCh---------------------------------------------
Confidence            999887543   1 222 78888888888765310                                             


Q ss_pred             chhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCC
Q 043523          551 VETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP  625 (650)
Q Consensus       551 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  625 (650)
                          .+..++.|+.|++++|.++++.  .+..+++|++|++++|++++.  ..+..+++|++|++++|.++..+.
T Consensus       123 ----~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          123 ----SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             ----GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             ----hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence                1235677778888888877552  577777888888888887754  567777788888888887775533

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=3.2e-17  Score=161.82  Aligned_cols=66  Identities=6%  Similarity=-0.052  Sum_probs=54.1

Q ss_pred             ccCCCccccCCcCCC-EEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEc
Q 043523          573 EGPIPEEMGRFKSLY-ALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNL  639 (650)
Q Consensus       573 ~~~~~~~~~~l~~L~-~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l  639 (650)
                      ..+...+|.+|++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|.++.+.+.+|.++++|+.++.
T Consensus       262 ~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          262 KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            345666788888888 888888 777777888888888888888888888888888888888888763

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.69  E-value=3.5e-16  Score=163.62  Aligned_cols=150  Identities=25%  Similarity=0.353  Sum_probs=95.4

Q ss_pred             CCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcC
Q 043523          294 ISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSN  373 (650)
Q Consensus       294 l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~  373 (650)
                      +++|+.|++++|.+++... ...+|++|++++|+++.+|.    .+++|+.|++++|.+.+ +|.   .+++|+.|++++
T Consensus        99 l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~  169 (571)
T 3cvr_A           99 PASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRN  169 (571)
T ss_dssp             CTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred             cCCCCEEEccCCCCCCcch-hhcCCCEEECCCCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCC
Confidence            3444444444444444221 22255556666666555554    25666666666666665 333   456777777777


Q ss_pred             ccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCc-------cEEEcCCCccccccchhcccCCCCCEEeC
Q 043523          374 NNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGL-------QILDLGGNQLQGVVPKSLANCNMLQVLDL  446 (650)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L-------~~L~ls~~~i~~~~~~~~~~l~~L~~L~L  446 (650)
                      |.+++ +|. +.    ++|++|++++|.++ .++.  |..  +|       +.|++++|.++ .+|..+..+++|+.|+|
T Consensus       170 N~L~~-lp~-l~----~~L~~L~Ls~N~L~-~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L  237 (571)
T 3cvr_A          170 NQLTF-LPE-LP----ESLEALDVSTNLLE-SLPA--VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIIL  237 (571)
T ss_dssp             SCCSC-CCC-CC----TTCCEEECCSSCCS-SCCC--CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEEC
T ss_pred             CCCCC-cch-hh----CCCCEEECcCCCCC-chhh--HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEe
Confidence            77764 554 32    37888888888877 5555  333  56       88999998888 56777777889999999


Q ss_pred             CCCccccccchhhhcCCC
Q 043523          447 KNNHISDNFPCWLGNASS  464 (650)
Q Consensus       447 s~n~l~~~~~~~~~~~~~  464 (650)
                      ++|++.+..|..+..++.
T Consensus       238 ~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          238 EDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CSSSCCHHHHHHHHHHHH
T ss_pred             eCCcCCCcCHHHHHHhhc
Confidence            999888877777766433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=1.7e-16  Score=143.88  Aligned_cols=153  Identities=16%  Similarity=0.262  Sum_probs=129.8

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCc
Q 043523           17 ILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLF   96 (650)
Q Consensus        17 ~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~   96 (650)
                      .+++++|+.|++++|.+.+.  +.+..+++|++|++++|.+.  .+..+..+++|++|++++|++++..+..+.++++|+
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCC--TTGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhhcCCccEEeccCCCccCh--HHHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            36788999999999998643  37888999999999999765  335788999999999999999977888999999999


Q ss_pred             EEEccCCcccc-cCCccccCCCcCEEeCCCCc-CcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccC
Q 043523           97 HMDFSSNHFSG-HIPSLHKSRNLKYLDLSFNN-LSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSN  174 (650)
Q Consensus        97 ~L~l~~~~i~~-~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  174 (650)
                      +|++++|.+.. .+..+..+++|++|++++|. ++ .++ . +..+++|+.|++++|.+.+..  .+..+++|++|++++
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~-l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-P-LKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-G-GGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECB
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-h-hcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeC
Confidence            99999999986 34567888999999999998 65 444 3 899999999999999998643  788899999999999


Q ss_pred             CcCC
Q 043523          175 NQFE  178 (650)
Q Consensus       175 ~~~~  178 (650)
                      |.+.
T Consensus       191 N~i~  194 (197)
T 4ezg_A          191 QTIG  194 (197)
T ss_dssp             C---
T ss_pred             cccC
Confidence            9875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=4e-16  Score=148.11  Aligned_cols=161  Identities=16%  Similarity=0.197  Sum_probs=89.0

Q ss_pred             ecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccc
Q 043523            3 DLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFT   82 (650)
Q Consensus         3 ~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~   82 (650)
                      +++++.++...  .+.++++|+.|++++|.+++.  +.+..+++|++|++++|.+.+. +. +..+++|++|++++|+++
T Consensus        25 ~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~   98 (263)
T 1xeu_A           25 NLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLK   98 (263)
T ss_dssp             HHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCS
T ss_pred             HhcCCCccccc--chhhcCcCcEEECcCCCcccc--hHHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccC
Confidence            44555555332  455666666666666666433  2555566666666666666532 22 666666666666666665


Q ss_pred             cCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhcc
Q 043523           83 GPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLF  162 (650)
Q Consensus        83 ~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  162 (650)
                      + .|. +.. ++|++|++++|.+... +.+..+++|++|++++|.+++. + . +..+++|+.|++++|.+.+.  ..+.
T Consensus        99 ~-l~~-~~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~~-~-~-l~~l~~L~~L~L~~N~i~~~--~~l~  169 (263)
T 1xeu_A           99 N-LNG-IPS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI-V-M-LGFLSKLEVLDLHGNEITNT--GGLT  169 (263)
T ss_dssp             C-CTT-CCC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCBC-G-G-GGGCTTCCEEECTTSCCCBC--TTST
T ss_pred             C-cCc-ccc-CcccEEEccCCccCCC-hhhcCcccccEEECCCCcCCCC-h-H-HccCCCCCEEECCCCcCcch--HHhc
Confidence            3 222 122 5666666666666543 3455556666666666665532 2 2 55556666666666655543  4455


Q ss_pred             CCCCCCEEEccCCcCC
Q 043523          163 LLPNLETLWLSNNQFE  178 (650)
Q Consensus       163 ~l~~L~~L~l~~~~~~  178 (650)
                      .+++|+.|++++|.+.
T Consensus       170 ~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          170 RLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TCCCCCEEEEEEEEEE
T ss_pred             cCCCCCEEeCCCCccc
Confidence            5555555555555444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=9.2e-16  Score=138.13  Aligned_cols=142  Identities=27%  Similarity=0.311  Sum_probs=122.6

Q ss_pred             cEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeC
Q 043523          367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDL  446 (650)
Q Consensus       367 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L  446 (650)
                      +.++++++.+. .+|..+..    ++++|++++|.+.+..+...|..+++|++|++++|++++..|.+|..+++|++|+|
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~----~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL----HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT----TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCcC-cCccCCCC----CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            67788888775 55554322    88999999999885555556899999999999999999888999999999999999


Q ss_pred             CCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHh
Q 043523          447 KNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEE  515 (650)
Q Consensus       447 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~  515 (650)
                      ++|++.+..+..|.++++|++|++++|++++..  +..+..+++|++|++++|++.+.++..|+..+..
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~  152 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLR  152 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHH
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC--HHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHH
Confidence            999999988888999999999999999999876  7788899999999999999999999888766543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=2.6e-15  Score=134.97  Aligned_cols=140  Identities=21%  Similarity=0.252  Sum_probs=119.9

Q ss_pred             cEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeC
Q 043523          367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDL  446 (650)
Q Consensus       367 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L  446 (650)
                      +.++++++.+. .+|..+.    +++++|++++|.+. .++ ..|..+++|++|++++|.+++..+.+|..+++|++|+|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~----~~l~~L~L~~n~i~-~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L   85 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP----RDVTELYLDGNQFT-LVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL   85 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC----TTCCEEECCSSCCC-SCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCCC-cCCCCCC----CCCCEEECCCCcCc-hhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence            46777777766 5554332    38899999999987 666 45899999999999999999888888999999999999


Q ss_pred             CCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHh
Q 043523          447 KNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEE  515 (650)
Q Consensus       447 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~  515 (650)
                      ++|++..+.+..|..+++|++|++++|+++...  ...+..+++|+.|++++|++.|.+...|+..+..
T Consensus        86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~  152 (193)
T 2wfh_A           86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP--EGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVK  152 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred             CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeC--hhhhhcCccccEEEeCCCCeecCCcCHHHHHHHH
Confidence            999999988889999999999999999998654  4567889999999999999999999999887654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.63  E-value=1.6e-14  Score=145.27  Aligned_cols=87  Identities=11%  Similarity=0.087  Sum_probs=65.5

Q ss_pred             hcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCC-
Q 043523          554 MLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLN-  632 (650)
Q Consensus       554 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~-  632 (650)
                      ..+..|++|+.+++.+ .+..+...+|.+|++|+.+.|..+ ++.+...+|.++ +|+.+++++|......+..|..++ 
T Consensus       294 ~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~  370 (401)
T 4fdw_A          294 YCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPD  370 (401)
T ss_dssp             TTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCT
T ss_pred             HHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCC
Confidence            3445566666777663 355677778888888898888654 666778888888 899999988888877888888885 


Q ss_pred             CCCeEEccCCc
Q 043523          633 FLSVLNLSYNN  643 (650)
Q Consensus       633 ~L~~L~l~~n~  643 (650)
                      .++.|.+..+.
T Consensus       371 ~l~~l~vp~~~  381 (401)
T 4fdw_A          371 DITVIRVPAES  381 (401)
T ss_dssp             TCCEEEECGGG
T ss_pred             CccEEEeCHHH
Confidence            67888877654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=3e-15  Score=147.65  Aligned_cols=103  Identities=16%  Similarity=0.153  Sum_probs=90.2

Q ss_pred             ccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCC-EEeCCCCccccccchhhhcCCCCCe
Q 043523          389 ETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQ-VLDLKNNHISDNFPCWLGNASSLQV  467 (650)
Q Consensus       389 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~~~~L~~  467 (650)
                      .++|+.+++++|++. .++...|.+|.+|+.+++.+| ++.+...+|.+|++|+ .+++.+ .++.+.+.+|.+|++|++
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            348999999999887 888888999999999999987 7777888999999999 999998 788888889999999999


Q ss_pred             EEccCcccceecCCCCCCCCCCCCCeeeC
Q 043523          468 LVLQSNNFSGHISCPRNNVSWPLLQIVDL  496 (650)
Q Consensus       468 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  496 (650)
                      +++++|.++...  ...+.+|++|+.++.
T Consensus       302 l~l~~n~i~~I~--~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          302 VLATGDKITTLG--DELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECSSCCCEEC--TTTTCTTCCCCEEEC
T ss_pred             EEeCCCccCccc--hhhhcCCcchhhhcc
Confidence            999999988776  778889999998863

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.62  E-value=2.3e-14  Score=144.06  Aligned_cols=241  Identities=11%  Similarity=0.090  Sum_probs=162.4

Q ss_pred             CCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccE
Q 043523          340 SETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQI  419 (650)
Q Consensus       340 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  419 (650)
                      ..++.+.+.+ .+..+....|.++ +|+.+.+..+ +......+|.. .  +|+.+.+.. .+. .+....|..|.+|+.
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~--~L~~i~lp~-~l~-~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-S--TVQEIVFPS-TLE-QLKEDIFYYCYNLKK  184 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-C--CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-C--CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence            4444444443 2333333444443 4666666554 33233333333 1  566666664 333 556666777777777


Q ss_pred             EEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCc
Q 043523          420 LDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASN  499 (650)
Q Consensus       420 L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n  499 (650)
                      +++.+|+++.....+|. +.+|+.+.+.++ +..+...+|.+|++|+++.+.++ ++...  ...+.+ .+|+.+.+.++
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~--~~aF~~-~~L~~i~lp~~  258 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIG--QEAFRE-SGITTVKLPNG  258 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEEC--TTTTTT-CCCSEEEEETT
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcc--cccccc-CCccEEEeCCC
Confidence            77777777755556665 567777777744 66666667777777777777764 33333  334444 56666666332


Q ss_pred             ccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccc-----c
Q 043523          500 KFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFE-----G  574 (650)
Q Consensus       500 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~-----~  574 (650)
                                                                      +..+....+..|+.|+.+++.++.+.     .
T Consensus       259 ------------------------------------------------i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~  290 (401)
T 4fdw_A          259 ------------------------------------------------VTNIASRAFYYCPELAEVTTYGSTFNDDPEAM  290 (401)
T ss_dssp             ------------------------------------------------CCEECTTTTTTCTTCCEEEEESSCCCCCTTCE
T ss_pred             ------------------------------------------------ccEEChhHhhCCCCCCEEEeCCccccCCcccE
Confidence                                                            22344455667888899988887765     5


Q ss_pred             CCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCc
Q 043523          575 PIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV  645 (650)
Q Consensus       575 ~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~  645 (650)
                      +...+|.+|++|+.+.+.+ .++.+...+|.+|++|+.+++..+ ++.+.+.+|.++ +|+.+++++|...
T Consensus       291 I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          291 IHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             ECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             ECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            7778999999999999994 588788999999999999999655 888889999999 9999999999765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=1e-17  Score=176.36  Aligned_cols=122  Identities=17%  Similarity=0.167  Sum_probs=82.9

Q ss_pred             CCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhh
Q 043523          440 MLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVA  519 (650)
Q Consensus       440 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~  519 (650)
                      .|+.|+|++|.+++ +|. +..+++|++|++++|.++.   ++..+.++++|+.|++++|.++                 
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~Ls~N~l~-----------------  499 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRA---LPPALAALRCLEVLQASDNALE-----------------  499 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCC---CCGGGGGCTTCCEEECCSSCCC-----------------
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCcccccc---cchhhhcCCCCCEEECCCCCCC-----------------
Confidence            47788888888777 444 7777888888888887762   2445555555555555555432                 


Q ss_pred             hcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCccc
Q 043523          520 ETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGS  599 (650)
Q Consensus       520 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~  599 (650)
                                                                            ++ + .+..+++|+.|+|++|++++.
T Consensus       500 ------------------------------------------------------~l-p-~l~~l~~L~~L~Ls~N~l~~~  523 (567)
T 1dce_A          500 ------------------------------------------------------NV-D-GVANLPRLQELLLCNNRLQQS  523 (567)
T ss_dssp             ------------------------------------------------------CC-G-GGTTCSSCCEEECCSSCCCSS
T ss_pred             ------------------------------------------------------CC-c-ccCCCCCCcEEECCCCCCCCC
Confidence                                                                  22 2 566677888888888888766


Q ss_pred             C-CcCccCCCCCCeeeCCCCcCCccCCc---cccCCCCCCeEEc
Q 043523          600 I-PSSFGNLKQIESLDLSMNNLSGKIPA---QLASLNFLSVLNL  639 (650)
Q Consensus       600 ~-~~~~~~l~~L~~L~l~~n~i~~~~~~---~l~~l~~L~~L~l  639 (650)
                      . |..++.+++|++|++++|.+++.++.   .+..+++|+.|++
T Consensus       524 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          524 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            5 77788888888888888888766543   2345778887764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=1.2e-16  Score=168.25  Aligned_cols=185  Identities=22%  Similarity=0.242  Sum_probs=143.3

Q ss_pred             CCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCc-------------cccccchhhhcCCCCCeEE-ccCcccce
Q 043523          412 PRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNH-------------ISDNFPCWLGNASSLQVLV-LQSNNFSG  477 (650)
Q Consensus       412 ~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~~~~L~~L~-l~~n~~~~  477 (650)
                      ..+++|+.|++++|+++ .+|..++.|++|++|++++|.             ..+..|..+..+++|++|+ ++.|.+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            56778888999999887 678888888999999987774             4445667777788888887 55554321


Q ss_pred             ecCCC---CCCC--CCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccch
Q 043523          478 HISCP---RNNV--SWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVE  552 (650)
Q Consensus       478 ~~~~~---~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  552 (650)
                      .....   ..+.  ....|+.|++++|.+++. +.                                             
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~---------------------------------------------  458 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH---------------------------------------------  458 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC---------------------------------------------
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCCC-cC---------------------------------------------
Confidence            11000   0000  013488899998877631 11                                             


Q ss_pred             hhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccC-CccccCC
Q 043523          553 TMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI-PAQLASL  631 (650)
Q Consensus       553 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~l~~l  631 (650)
                         +..++.|+.|++++|.+. ..|..+..+++|+.|+|++|++++ +| .++.+++|++|++++|.+++.. |..+..+
T Consensus       459 ---~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l  532 (567)
T 1dce_A          459 ---LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSC  532 (567)
T ss_dssp             ---GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGC
T ss_pred             ---ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcC
Confidence               245788999999999999 557789999999999999999995 56 8999999999999999999887 9999999


Q ss_pred             CCCCeEEccCCcCcccCC
Q 043523          632 NFLSVLNLSYNNLVGKIP  649 (650)
Q Consensus       632 ~~L~~L~l~~n~~~~~~p  649 (650)
                      ++|+.|++++|++++..|
T Consensus       533 ~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          533 PRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             TTCCEEECTTSGGGGSSS
T ss_pred             CCCCEEEecCCcCCCCcc
Confidence            999999999999997654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.57  E-value=1.1e-13  Score=140.20  Aligned_cols=203  Identities=10%  Similarity=0.083  Sum_probs=86.8

Q ss_pred             CCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccCCcccc
Q 043523           35 QGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHK  114 (650)
Q Consensus        35 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~  114 (650)
                      .++..+|.+|.+|+.+.+..+ ++..-..+|.++.+|+.+++..+ ++.....+|.++.+|+.+.+..+ +.......+.
T Consensus        61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~  137 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK  137 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence            334445555555555555432 33233344555555555555433 33334445555555555444332 1111111111


Q ss_pred             CCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccE
Q 043523          115 SRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFD  194 (650)
Q Consensus       115 ~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  194 (650)
                      ...+........ .. .+....|.++++|+.+.+..+. ......+|..+.+|+.+.+..+ +. .+.......+..|+.
T Consensus       138 ~~~~~~~~~~~~-~~-~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~  212 (394)
T 4fs7_A          138 GCDFKEITIPEG-VT-VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLEN  212 (394)
T ss_dssp             TCCCSEEECCTT-CC-EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCB
T ss_pred             cccccccccCcc-cc-ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccce
Confidence            112222222111 11 1122225556666666655432 2244455566666666666544 11 233334444555555


Q ss_pred             EEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCC
Q 043523          195 LDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNN  257 (650)
Q Consensus       195 L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~  257 (650)
                      +.+..+...  +.... ....+|+.+.+... ++.+...        .+..+..++.+.+..+
T Consensus       213 i~~~~~~~~--i~~~~-~~~~~l~~i~ip~~-~~~i~~~--------~f~~~~~l~~~~~~~~  263 (394)
T 4fs7_A          213 MEFPNSLYY--LGDFA-LSKTGVKNIIIPDS-FTELGKS--------VFYGCTDLESISIQNN  263 (394)
T ss_dssp             CCCCTTCCE--ECTTT-TTTCCCCEEEECTT-CCEECSS--------TTTTCSSCCEEEECCT
T ss_pred             eecCCCceE--eehhh-cccCCCceEEECCC-ceecccc--------cccccccceeEEcCCC
Confidence            555443321  12222 33456666666432 1211111        1556666776666543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=4.1e-15  Score=130.99  Aligned_cols=136  Identities=18%  Similarity=0.134  Sum_probs=116.3

Q ss_pred             cCCCCCCEEeCCCCCCCC-CCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCc
Q 043523           18 LQVPTLETLDLSENQLLQ-GSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLF   96 (650)
Q Consensus        18 ~~~~~L~~L~ls~~~i~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~   96 (650)
                      ...++|+.|++++|.+++ ..+..|..+++|++|++++|.+.+.  ..+..+++|++|++++|++++..|..+.++++|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            345889999999999862 3344568899999999999999854  8899999999999999999977888888899999


Q ss_pred             EEEccCCcccccC--CccccCCCcCEEeCCCCcCcccCC--hHHHhccccCCeEEccCCcCCC
Q 043523           97 HMDFSSNHFSGHI--PSLHKSRNLKYLDLSFNNLSGGIS--STFWEQLVNLNLVLLSHNSLNG  155 (650)
Q Consensus        97 ~L~l~~~~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~L~~L~l~~~~~~~  155 (650)
                      +|++++|.++..+  +.+..+++|++|++++|.+++...  ...+..+++|+.|++++|.+..
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            9999999998765  578888999999999999985443  1348899999999999998773

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.56  E-value=2.9e-14  Score=128.30  Aligned_cols=127  Identities=21%  Similarity=0.270  Sum_probs=71.2

Q ss_pred             eecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCC-CCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCc
Q 043523            2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLP-NFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN   80 (650)
Q Consensus         2 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~   80 (650)
                      +++++++++ .+|..+.  +++++|++++|.+...... .|..+++|++|+|++|.+++..|..|..+++|++|++++|+
T Consensus        13 l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           13 VDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            455556555 3343332  2566666666665444332 35556666666666666665555566666666666666666


Q ss_pred             cccCCCcCccCCCCCcEEEccCCcccccCC-ccccCCCcCEEeCCCCcCccc
Q 043523           81 FTGPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGG  131 (650)
Q Consensus        81 l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~l~~~  131 (650)
                      +++..+..|.++++|++|++++|++....+ .+..+++|++|++++|.+...
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            665555556666666666666666655433 344455666666666655433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=1.2e-14  Score=127.97  Aligned_cols=134  Identities=21%  Similarity=0.240  Sum_probs=113.0

Q ss_pred             CCcccEEEccCCcCc-CCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccCCcc-ccCCCcCEE
Q 043523           44 NSSLRNLILSGTGFS-GTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSL-HKSRNLKYL  121 (650)
Q Consensus        44 l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~-~~~~~L~~L  121 (650)
                      .++|++|++++|.+. +.+|..+..+++|++|++++|.++..  ..+..+++|++|++++|.+...++.. ..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            478999999999987 67788889999999999999999855  78889999999999999998755544 458999999


Q ss_pred             eCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcc---hhccCCCCCCEEEccCCcCCC
Q 043523          122 DLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIP---RSLFLLPNLETLWLSNNQFEN  179 (650)
Q Consensus       122 ~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~  179 (650)
                      ++++|.+++......+..+++|+.|++++|.+....+   ..+..+++|++|++++|.+..
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            9999999853332347899999999999999986655   578899999999999998763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=1.3e-14  Score=124.87  Aligned_cols=129  Identities=18%  Similarity=0.154  Sum_probs=95.0

Q ss_pred             CCCCCCEEeCCCCCCC-CCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcE
Q 043523           19 QVPTLETLDLSENQLL-QGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFH   97 (650)
Q Consensus        19 ~~~~L~~L~ls~~~i~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~   97 (650)
                      ..++++.|++++|.++ ...+..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..|..+.++++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3467888888888876 23444667788888888888888744  67788888888888888888657777777888888


Q ss_pred             EEccCCcccccC--CccccCCCcCEEeCCCCcCcccCC--hHHHhccccCCeEEcc
Q 043523           98 MDFSSNHFSGHI--PSLHKSRNLKYLDLSFNNLSGGIS--STFWEQLVNLNLVLLS  149 (650)
Q Consensus        98 L~l~~~~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~L~~L~l~  149 (650)
                      |++++|.+++.+  ..+..+++|++|++++|.+++...  ...+..+++|+.|+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            888888887643  566777888888888887774433  1346777777777665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=5e-14  Score=125.18  Aligned_cols=141  Identities=19%  Similarity=0.213  Sum_probs=115.6

Q ss_pred             ccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEe
Q 043523          366 FQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLD  445 (650)
Q Consensus       366 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~  445 (650)
                      .+.++++++.+. .+|..+.    ++|++|++++|++. .++...|..+++|++|++++|++++..+..|..+++|++|+
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~----~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   82 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP----SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY   82 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC----TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEEecCCCCc-cCCCCCC----CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence            356777777765 4443332    38999999999988 56666689999999999999999977777789999999999


Q ss_pred             CCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccC-hHHHHhHH
Q 043523          446 LKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLS-QKWLLTME  514 (650)
Q Consensus       446 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~l~  514 (650)
                      +++|+++...+..+..+++|++|++++|.++...  ...+..+++|++|++++|++.+.++ ..++..+.
T Consensus        83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~  150 (177)
T 2o6r_A           83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL  150 (177)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred             CCCCCccccCHHHhhCCcccCEEECcCCcceEeC--HHHhcCCcccCEEEecCCCeeccCccHHHHHHHH
Confidence            9999999977778899999999999999998553  4456789999999999999998876 55555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=7.5e-15  Score=126.42  Aligned_cols=123  Identities=23%  Similarity=0.193  Sum_probs=109.5

Q ss_pred             CeecCCCCCc-ccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCC
Q 043523            1 TLDLSECGLQ-GKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRC   79 (650)
Q Consensus         1 ~L~l~~~~i~-~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~   79 (650)
                      +|++++|.++ +..|..+..+++|++|++++|.++..  ..|..+++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus        21 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N   98 (149)
T 2je0_A           21 ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN   98 (149)
T ss_dssp             EEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS
T ss_pred             EEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC
Confidence            3789999998 78888999999999999999999665  78999999999999999999768888888999999999999


Q ss_pred             ccccC-CCcCccCCCCCcEEEccCCcccccCC----ccccCCCcCEEeCCC
Q 043523           80 NFTGP-IPPSMANLTQLFHMDFSSNHFSGHIP----SLHKSRNLKYLDLSF  125 (650)
Q Consensus        80 ~l~~~-~~~~l~~l~~L~~L~l~~~~i~~~~~----~~~~~~~L~~L~l~~  125 (650)
                      .+++. .+..+..+++|++|++++|.+...++    .+..+++|++|++++
T Consensus        99 ~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           99 KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99853 34789999999999999999998776    577889999999864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.52  E-value=1.1e-13  Score=124.23  Aligned_cols=106  Identities=19%  Similarity=0.160  Sum_probs=50.6

Q ss_pred             CCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEcc
Q 043523           22 TLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFS  101 (650)
Q Consensus        22 ~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~  101 (650)
                      +|++|++++|.++... ..|..+++|++|+|++|.+++..+..|.++++|++|++++|+++...+.+|.++++|++|+++
T Consensus        32 ~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            4555555555543222 344444555555555555544444445555555555555555554444445555555555555


Q ss_pred             CCcccccCCc-cccCCCcCEEeCCCCcC
Q 043523          102 SNHFSGHIPS-LHKSRNLKYLDLSFNNL  128 (650)
Q Consensus       102 ~~~i~~~~~~-~~~~~~L~~L~l~~~~l  128 (650)
                      +|.+...++. +..+++|++|++++|.+
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            5555444332 33344455555554444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.51  E-value=4e-15  Score=161.88  Aligned_cols=154  Identities=19%  Similarity=0.188  Sum_probs=79.0

Q ss_pred             ccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHH
Q 043523          430 VVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKW  509 (650)
Q Consensus       430 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  509 (650)
                      ..+..+..++.|+.|+|++|.+.. ++..+..+++|++|+|++|.++.   ++..+.++++|++|+|++|.++ .++.. 
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~Ls~N~l~-~lp~~-  288 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLTE---LPAEIKNLSNLRVLDLSHNRLT-SLPAE-  288 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCSC---CCGGGGGGTTCCEEECTTSCCS-SCCSS-
T ss_pred             cChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCcc---cChhhhCCCCCCEEeCcCCcCC-ccChh-
Confidence            345556666666666666666654 33344466666666666666551   2444555555666666555544 11111 


Q ss_pred             HHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEE
Q 043523          510 LLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYAL  589 (650)
Q Consensus       510 ~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L  589 (650)
                                                                    +..++.|++|+|++|.++ .++..+..+++|+.|
T Consensus       289 ----------------------------------------------~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L  321 (727)
T 4b8c_D          289 ----------------------------------------------LGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL  321 (727)
T ss_dssp             ----------------------------------------------GGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred             ----------------------------------------------hcCCCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence                                                          123445555666666655 334457777777777


Q ss_pred             eCccccCcccCCcCccCCCC-CCeeeCCCCcCCccCCccccCCCCCCeEEccCC
Q 043523          590 NMSHNALTGSIPSSFGNLKQ-IESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN  642 (650)
Q Consensus       590 ~ls~n~i~~~~~~~~~~l~~-L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  642 (650)
                      +|++|++++..|..+..+.. +..+++++|.+++.+|.      .|+.|++++|
T Consensus       322 ~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          322 GVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             ECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred             eCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence            77777777766666554321 22467777777766663      4455556655

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=3.9e-13  Score=119.33  Aligned_cols=126  Identities=20%  Similarity=0.214  Sum_probs=73.5

Q ss_pred             eecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCcc
Q 043523            2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNF   81 (650)
Q Consensus         2 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l   81 (650)
                      +++++++++. .|..+  .++|+.|++++|+++......|..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus        12 l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           12 IRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             EECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence            4555555552 33222  25666666666666554444556666666666666666644444556666666666666666


Q ss_pred             ccCCCcCccCCCCCcEEEccCCcccccCCcc-ccCCCcCEEeCCCCcCcc
Q 043523           82 TGPIPPSMANLTQLFHMDFSSNHFSGHIPSL-HKSRNLKYLDLSFNNLSG  130 (650)
Q Consensus        82 ~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~-~~~~~L~~L~l~~~~l~~  130 (650)
                      ++..+..+.++++|++|++++|.+...++.. ..+++|++|++++|.+..
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            6554555566666666666666666555433 445666666666666553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=6e-14  Score=124.39  Aligned_cols=134  Identities=13%  Similarity=0.072  Sum_probs=89.8

Q ss_pred             ccccCCCCCCEEeCCCCCCCCCCCCCCCCCC-cccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCC
Q 043523           15 EKILQVPTLETLDLSENQLLQGSLPNFPKNS-SLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLT   93 (650)
Q Consensus        15 ~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~   93 (650)
                      ..+.++++|+.|++++|+++..  +.+..+. +|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..++
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             HhcCCcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence            3466778888888888887543  4455544 788888888887743  5677788888888888887754444457777


Q ss_pred             CCcEEEccCCcccccCC--ccccCCCcCEEeCCCCcCcccCChH---HHhccccCCeEEccCCcC
Q 043523           94 QLFHMDFSSNHFSGHIP--SLHKSRNLKYLDLSFNNLSGGISST---FWEQLVNLNLVLLSHNSL  153 (650)
Q Consensus        94 ~L~~L~l~~~~i~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~---~~~~l~~L~~L~l~~~~~  153 (650)
                      +|++|++++|.+...++  .+..+++|++|++++|.+.. ++..   .+..+++|+.|++++|..
T Consensus        89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence            88888888877765554  56666777777777777652 2321   245555566665555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=1e-13  Score=122.94  Aligned_cols=41  Identities=24%  Similarity=0.280  Sum_probs=20.7

Q ss_pred             cccCCcCCCEEeCccccCcccCCc----CccCCCCCCeeeCCCCcC
Q 043523          579 EMGRFKSLYALNMSHNALTGSIPS----SFGNLKQIESLDLSMNNL  620 (650)
Q Consensus       579 ~~~~l~~L~~L~ls~n~i~~~~~~----~~~~l~~L~~L~l~~n~i  620 (650)
                      .+..+++|+.|++++|+++. .|.    .++.+++|++||+++|..
T Consensus       108 ~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          108 PLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             GGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred             hhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence            34445555555555555552 232    245555555555555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.47  E-value=1.5e-12  Score=131.86  Aligned_cols=89  Identities=11%  Similarity=0.070  Sum_probs=73.3

Q ss_pred             chhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccC
Q 043523          551 VETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS  630 (650)
Q Consensus       551 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~  630 (650)
                      +....+..+..|+.+.+..+ +..+...+|.+|.+|+.+++..+ ++.+...+|.+|++|+.+++..+ ++.+...+|.+
T Consensus       288 i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~  364 (394)
T 4fs7_A          288 VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG  364 (394)
T ss_dssp             ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred             eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence            34455677888999988765 56677788999999999999754 77778889999999999999876 77788889999


Q ss_pred             CCCCCeEEccCC
Q 043523          631 LNFLSVLNLSYN  642 (650)
Q Consensus       631 l~~L~~L~l~~n  642 (650)
                      |++|+.+++..+
T Consensus       365 C~~L~~i~lp~~  376 (394)
T 4fs7_A          365 CINLKKVELPKR  376 (394)
T ss_dssp             CTTCCEEEEEGG
T ss_pred             CCCCCEEEECCC
Confidence            999999998765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.44  E-value=3.8e-14  Score=154.13  Aligned_cols=192  Identities=18%  Similarity=0.198  Sum_probs=104.2

Q ss_pred             CCCCEEeCCCCCCCCCCCCCCCCCCcccEEE-----ccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCC
Q 043523           21 PTLETLDLSENQLLQGSLPNFPKNSSLRNLI-----LSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQL   95 (650)
Q Consensus        21 ~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~-----L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L   95 (650)
                      ++++.|+|+++.+... ...+.....|+.+.     +..+.+. ..++.+..+++|++|+|++|.+. .+|..+.++++|
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            4577788887777443 22222222333333     2233333 45677888888888888888887 667666788888


Q ss_pred             cEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCC
Q 043523           96 FHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNN  175 (650)
Q Consensus        96 ~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  175 (650)
                      ++|+|++|.++.+++.+..+++|++|++++|.++ .++.. +..+++|++|++++|.+. .+|..+..+++|+.|++++|
T Consensus       250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAE-LGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSS-GGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred             CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChh-hcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence            8888888888877767888888888888888887 56666 688888888888888887 55667888888888888888


Q ss_pred             cCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCC
Q 043523          176 QFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSN  225 (650)
Q Consensus       176 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~  225 (650)
                      .+...++............+++++|.+.+.+|.       .|..|+++.|
T Consensus       327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n  369 (727)
T 4b8c_D          327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-------ERRFIEINTD  369 (727)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C---------
T ss_pred             ccCCCChHHHhhcchhhhHHhhccCcccCcCcc-------ccceeEeecc
Confidence            887655544322112223456777777655553       3445555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=7.9e-13  Score=116.07  Aligned_cols=118  Identities=19%  Similarity=0.145  Sum_probs=98.5

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL  470 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  470 (650)
                      ..+.++++++.+. .++...+   ++|++|++++|++++..+..|..+++|++|+|++|++..+.+..|..+++|++|+|
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            4577888888877 5665432   67999999999999888888999999999999999999988888889999999999


Q ss_pred             cCcccceecCCCCCCCCCCCCCeeeCCCcccccccC-hHHHHhHH
Q 043523          471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLS-QKWLLTME  514 (650)
Q Consensus       471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~l~  514 (650)
                      ++|+++...  +..+..+++|++|++++|++.+.++ ..|+..|.
T Consensus        86 ~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l  128 (170)
T 3g39_A           86 NDNQLKSIP--RGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI  128 (170)
T ss_dssp             CSSCCCCCC--TTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHH
T ss_pred             CCCccCEeC--HHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHH
Confidence            999998654  4568889999999999999999885 66665543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.40  E-value=2.4e-12  Score=113.28  Aligned_cols=118  Identities=18%  Similarity=0.112  Sum_probs=95.4

Q ss_pred             ccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEcc
Q 043523          392 LGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQ  471 (650)
Q Consensus       392 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~  471 (650)
                      -+.++++++.+. .+|....   ++|++|++++|++++..+..|..+++|++|+|++|++..+.+..|..+++|++|+|+
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            467788888776 6665432   679999999999987778889999999999999999998777778889999999999


Q ss_pred             CcccceecCCCCCCCCCCCCCeeeCCCcccccccC-hHHHHhHHh
Q 043523          472 SNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLS-QKWLLTMEE  515 (650)
Q Consensus       472 ~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~l~~  515 (650)
                      +|++....  ...+..+++|++|++++|++.+.+. ..++..|..
T Consensus        90 ~N~l~~l~--~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~  132 (174)
T 2r9u_A           90 DNHLKSIP--RGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVA  132 (174)
T ss_dssp             SSCCCCCC--TTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHH
T ss_pred             CCccceeC--HHHhccccCCCEEEeCCCCcccccccHHHHHHHHH
Confidence            99988553  4458889999999999999998875 666655543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.37  E-value=2.7e-14  Score=142.19  Aligned_cols=113  Identities=15%  Similarity=0.114  Sum_probs=67.3

Q ss_pred             cCccEEEccCccCCCcCCCc---cc-CCCCCccEEEcCCCccccccchhc-ccCCCCCEEeCCCCccccccchhhh----
Q 043523          390 TTLGVLNLGRNNLNGTLSDT---IF-PRNCGLQILDLGGNQLQGVVPKSL-ANCNMLQVLDLKNNHISDNFPCWLG----  460 (650)
Q Consensus       390 ~~L~~L~l~~~~~~~~~~~~---~~-~~l~~L~~L~ls~~~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~----  460 (650)
                      +.|+.|++++|.+.......   .+ ...++|++|++++|.+.......+ ..+++|++|+|++|.+++.....+.    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            47888888888776322111   11 133578888888887765443333 2356778888888887764444442    


Q ss_pred             -cCCCCCeEEccCcccceec--CCCCCCCCCCCCCeeeCCCcccc
Q 043523          461 -NASSLQVLVLQSNNFSGHI--SCPRNNVSWPLLQIVDLASNKFS  502 (650)
Q Consensus       461 -~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~  502 (650)
                       .+++|++|+|++|.++...  .+...+..+++|++|+|++|.+.
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence             3567777777777765321  11222345566666666666654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.37  E-value=6.8e-15  Score=133.36  Aligned_cols=83  Identities=20%  Similarity=0.168  Sum_probs=50.0

Q ss_pred             CcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCC-cCccCCCCCCeeeCCCCcCCccCCc----------cc
Q 043523          560 NIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGKIPA----------QL  628 (650)
Q Consensus       560 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~----------~l  628 (650)
                      +.|++|++++|.+.++.  .+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+++..|.          .+
T Consensus        93 ~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A           93 DTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred             CcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence            34455555555554321  45566777777777777764322 3566677777777777777655443          26


Q ss_pred             cCCCCCCeEEccCCcCcc
Q 043523          629 ASLNFLSVLNLSYNNLVG  646 (650)
Q Consensus       629 ~~l~~L~~L~l~~n~~~~  646 (650)
                      ..+++|+.||  +|+++.
T Consensus       171 ~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          171 KRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHCSSCSEEC--CGGGTT
T ss_pred             HhCCCcEEEC--CcccCH
Confidence            7777777776  565553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.36  E-value=5.9e-12  Score=110.46  Aligned_cols=106  Identities=18%  Similarity=0.171  Sum_probs=83.9

Q ss_pred             CCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccC
Q 043523           23 LETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSS  102 (650)
Q Consensus        23 L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~  102 (650)
                      .+.++++++.++... ..+  .++|++|+|++|.+++..|..|..+++|++|++++|+++...+..|.++++|++|++++
T Consensus        11 ~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            578888888875543 333  27788888888888877778888888888888888888876667788888888888888


Q ss_pred             CcccccCCc-cccCCCcCEEeCCCCcCccc
Q 043523          103 NHFSGHIPS-LHKSRNLKYLDLSFNNLSGG  131 (650)
Q Consensus       103 ~~i~~~~~~-~~~~~~L~~L~l~~~~l~~~  131 (650)
                      |++...++. +..+++|++|++++|.+...
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            888877764 66778888898888887644

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.35  E-value=5.4e-12  Score=111.03  Aligned_cols=106  Identities=18%  Similarity=0.204  Sum_probs=83.3

Q ss_pred             CCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccC
Q 043523           23 LETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSS  102 (650)
Q Consensus        23 L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~  102 (650)
                      -+.++++++.+.... ..+.  ++|++|+|++|.+.+..|..|.++++|++|++++|++++..+..|.++++|++|++++
T Consensus        14 ~~~l~~~~n~l~~iP-~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVP-AGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCC-SCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccC-CCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            367888888875443 3343  7888888888888877778888888888888888888866566678888888888888


Q ss_pred             CcccccCCc-cccCCCcCEEeCCCCcCccc
Q 043523          103 NHFSGHIPS-LHKSRNLKYLDLSFNNLSGG  131 (650)
Q Consensus       103 ~~i~~~~~~-~~~~~~L~~L~l~~~~l~~~  131 (650)
                      |++..+++. +..+++|++|++++|.+...
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            888877765 66788888888888887643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.34  E-value=6.9e-14  Score=139.23  Aligned_cols=188  Identities=16%  Similarity=0.094  Sum_probs=126.1

Q ss_pred             CCccEEEcCCCccccccchhccc-----CCCCCEEeCCCCccccccchhhh-cCCCCCeEEccCcccceecC--CCCCC-
Q 043523          415 CGLQILDLGGNQLQGVVPKSLAN-----CNMLQVLDLKNNHISDNFPCWLG-NASSLQVLVLQSNNFSGHIS--CPRNN-  485 (650)
Q Consensus       415 ~~L~~L~ls~~~i~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~--~~~~~-  485 (650)
                      +.|+.|++++|.++......+..     +++|++|+|++|.+.+.....+. .+++|++|+|++|.++....  +...+ 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            46999999999988655444433     37999999999999875444443 47889999999999874320  11112 


Q ss_pred             CCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEE
Q 043523          486 VSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSI  565 (650)
Q Consensus       486 ~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  565 (650)
                      ...+.|++|++++|.++.........                                           .+...+.|++|
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~-------------------------------------------~L~~~~~L~~L  188 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLME-------------------------------------------GLAGNTSVTHL  188 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHH-------------------------------------------HHHTCSSCCEE
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHH-------------------------------------------HHhcCCCcCEE
Confidence            34688999999999875321111110                                           11246778999


Q ss_pred             eCCCCccccCC----CccccCCcCCCEEeCccccCccc----CCcCccCCCCCCeeeCCCCcCCccCCccccCCCC----
Q 043523          566 DFSSNNFEGPI----PEEMGRFKSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNF----  633 (650)
Q Consensus       566 ~l~~~~~~~~~----~~~~~~l~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~----  633 (650)
                      +|++|.+.+..    ...+...++|++|+|++|.|++.    +..++..+++|++|++++|.|+......+..+..    
T Consensus       189 ~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~  268 (372)
T 3un9_A          189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEG  268 (372)
T ss_dssp             ECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC-----
T ss_pred             eCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCc
Confidence            99999987543    34566778999999999999863    3344556788999999999998766555554422    


Q ss_pred             -CCeEE--ccCCcCc
Q 043523          634 -LSVLN--LSYNNLV  645 (650)
Q Consensus       634 -L~~L~--l~~n~~~  645 (650)
                       |+.+.  +..|.++
T Consensus       269 ~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          269 GARVVVSLTEGTAVS  283 (372)
T ss_dssp             -CEEECCCC----CH
T ss_pred             cchhhHhhhcCCccC
Confidence             66666  6666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.32  E-value=9.5e-11  Score=118.49  Aligned_cols=333  Identities=9%  Similarity=0.114  Sum_probs=187.3

Q ss_pred             CChHHHhccc-cCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCC--CCCchhhhcCCCCccEEEccCCcCCCCCch
Q 043523          132 ISSTFWEQLV-NLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFE--NQLPEISNVSSSVLFDLDLSGNRLEGPVPI  208 (650)
Q Consensus       132 ~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  208 (650)
                      +....|.+++ .|+.+.+..+ ++.+...+|.++.+|+.+.+..+...  ..+....+..+..|+.+.+..+ +. .++.
T Consensus        54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~  130 (394)
T 4gt6_A           54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDS  130 (394)
T ss_dssp             ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECT
T ss_pred             cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehh
Confidence            3444477774 5999999764 66677889999999999998776422  1344556666778887777654 33 5666


Q ss_pred             hHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeecccccc-C
Q 043523          209 SIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLV-S  287 (650)
Q Consensus       209 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~-~  287 (650)
                      ..|..+.+|+.+.+... +..+...        .+..+..|+.+.+.++ +......++ .  ..+|+.+.+...-.. .
T Consensus       131 ~aF~~c~~L~~i~lp~~-~~~I~~~--------~F~~c~~L~~i~~~~~-~~~I~~~aF-~--~~~l~~i~ip~~~~~i~  197 (394)
T 4gt6_A          131 EAFHHCEELDTVTIPEG-VTSVADG--------MFSYCYSLHTVTLPDS-VTAIEERAF-T--GTALTQIHIPAKVTRIG  197 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTT--------TTTTCTTCCEEECCTT-CCEECTTTT-T--TCCCSEEEECTTCCEEC
T ss_pred             hhhhhhcccccccccce-eeeeccc--------ceecccccccccccce-eeEeccccc-c--ccceeEEEECCcccccc
Confidence            77788888888888653 2222111        1677888888888764 221222222 1  134677666554211 1


Q ss_pred             CcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCccc
Q 043523          288 LQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQ  367 (650)
Q Consensus       288 l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~  367 (650)
                      ......+..+.................+        ..+...............+..+.+.. .+.......|..|..|+
T Consensus       198 ~~af~~c~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~  268 (394)
T 4gt6_A          198 TNAFSECFALSTITSDSESYPAIDNVLY--------EKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLA  268 (394)
T ss_dssp             TTTTTTCTTCCEEEECCSSSCBSSSCEE--------EECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCC
T ss_pred             cchhhhccccceecccccccccccceee--------cccccccccccccccccccceEEcCC-cceEcccceeeeccccc
Confidence            1112224444444433322111000000        00000000000000012223333322 23334445677778888


Q ss_pred             EEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCC
Q 043523          368 VLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLK  447 (650)
Q Consensus       368 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls  447 (650)
                      .+.+.+.... ....++...  +.|+.+.+.. .+. .++...|..|.+|+.+++..+ ++.+...+|.+|.+|+.+.|.
T Consensus       269 ~i~lp~~~~~-I~~~aF~~c--~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          269 SVKMPDSVVS-IGTGAFMNC--PALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP  342 (394)
T ss_dssp             EEECCTTCCE-ECTTTTTTC--TTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred             EEecccccce-ecCcccccc--cccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence            8887655332 222333333  3788888753 333 677777999999999998764 665677889999999999997


Q ss_pred             CCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCccc
Q 043523          448 NNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKF  501 (650)
Q Consensus       448 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~  501 (650)
                      .+ ++.+...+|.+|.+|+.+++.++...     ...+..+..|+.+.+..+.+
T Consensus       343 ~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-----~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          343 SS-VTKIPESAFSNCTALNNIEYSGSRSQ-----WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TT-CCBCCGGGGTTCTTCCEEEESSCHHH-----HHTCBCCCCC----------
T ss_pred             cc-cCEEhHhHhhCCCCCCEEEECCceee-----hhhhhccCCCCEEEeCCCCE
Confidence            65 77777788889999999999887654     23456677888888876643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.28  E-value=7.7e-15  Score=132.99  Aligned_cols=133  Identities=23%  Similarity=0.277  Sum_probs=89.1

Q ss_pred             CCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccC
Q 043523           64 SIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNL  143 (650)
Q Consensus        64 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L  143 (650)
                      .+..+++|++|++++|.+++ +| .+.++++|++|++++|.+..++..+..+++|++|++++|.+++ ++ . +..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~-~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-G-IEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-H-HHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-c-cccCCCC
Confidence            66677777777777777774 55 6777777777777777777655555556777788887777764 32 2 6777788


Q ss_pred             CeEEccCCcCCCCcc-hhccCCCCCCEEEccCCcCCCCCch---------hhhcCCCCccEEEccCCcCC
Q 043523          144 NLVLLSHNSLNGSIP-RSLFLLPNLETLWLSNNQFENQLPE---------ISNVSSSVLFDLDLSGNRLE  203 (650)
Q Consensus       144 ~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~---------~~~~~~~~L~~L~l~~~~l~  203 (650)
                      ++|++++|.+..... ..+..+++|++|++++|.+....+.         .....+++|+.|+  ++.+.
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            888888887775432 4677788888888888776533221         1233467777776  44443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.26  E-value=5.8e-10  Score=112.69  Aligned_cols=305  Identities=10%  Similarity=0.119  Sum_probs=157.5

Q ss_pred             ccceeeeccccccCCcCcc--cCCcccEEEeccCc---C---CCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEE
Q 043523          274 NLNFLNLSHNLLVSLQEPY--SISSIRLLDLHSNQ---L---RGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYF  345 (650)
Q Consensus       274 ~L~~L~l~~~~l~~l~~~~--~l~~L~~L~l~~~~---l---~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l  345 (650)
                      .|+.+.+... ++.++...  .+.+|+.+.+..+.   +   ....+..+.+|+.+.+.. .++.++...+..+.+|+.+
T Consensus        65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEECTTTTTTCTTCCEE
T ss_pred             cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-ccceehhhhhhhhcccccc
Confidence            3667766543 44443332  35677777766542   2   223344445555555433 2455555555566666666


Q ss_pred             EccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCC
Q 043523          346 FAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGN  425 (650)
Q Consensus       346 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~  425 (650)
                      .+... +.......+..+..|+.+.+.++ +......++..   ..|+.+.+...-.  .+....|..+.+++.......
T Consensus       143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~---~~l~~i~ip~~~~--~i~~~af~~c~~l~~~~~~~~  215 (394)
T 4gt6_A          143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG---TALTQIHIPAKVT--RIGTNAFSECFALSTITSDSE  215 (394)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT---CCCSEEEECTTCC--EECTTTTTTCTTCCEEEECCS
T ss_pred             cccce-eeeecccceecccccccccccce-eeEeccccccc---cceeEEEECCccc--ccccchhhhccccceeccccc
Confidence            66543 33344445556666666666544 22122222221   1566666654321  334444666666666655444


Q ss_pred             ccccccch-------------hcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCC
Q 043523          426 QLQGVVPK-------------SLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQ  492 (650)
Q Consensus       426 ~i~~~~~~-------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~  492 (650)
                      ........             .+.....+..+.+.+. +..+...+|.+|..|+.+.+.++.. ...  ...+.+|+.|+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~-~I~--~~aF~~c~~L~  291 (394)
T 4gt6_A          216 SYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV-SIG--TGAFMNCPALQ  291 (394)
T ss_dssp             SSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC-EEC--TTTTTTCTTCC
T ss_pred             ccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc-eec--Ccccccccccc
Confidence            32211100             0111223334444322 3333445566666677666655432 222  44556666666


Q ss_pred             eeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCcc
Q 043523          493 IVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNF  572 (650)
Q Consensus       493 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~  572 (650)
                      .+.+...                                                +..+....+..|.+|+.++|..+ +
T Consensus       292 ~i~l~~~------------------------------------------------i~~I~~~aF~~c~~L~~i~lp~~-v  322 (394)
T 4gt6_A          292 DIEFSSR------------------------------------------------ITELPESVFAGCISLKSIDIPEG-I  322 (394)
T ss_dssp             EEECCTT------------------------------------------------CCEECTTTTTTCTTCCEEECCTT-C
T ss_pred             cccCCCc------------------------------------------------ccccCceeecCCCCcCEEEeCCc-c
Confidence            6666432                                                12233445566777778877654 5


Q ss_pred             ccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcC
Q 043523          573 EGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL  644 (650)
Q Consensus       573 ~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~  644 (650)
                      ..+...+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+++.++...   ...+..+..|+.+.+..+.+
T Consensus       323 ~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          323 TQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             cEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            5566677777888888887643 66566777888888888887776543   14566677777777766543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=7.6e-11  Score=117.21  Aligned_cols=119  Identities=21%  Similarity=0.196  Sum_probs=100.5

Q ss_pred             cEEEccCc-cCCCcCCCcccCCCCCccEEEcCC-CccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523          393 GVLNLGRN-NLNGTLSDTIFPRNCGLQILDLGG-NQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL  470 (650)
Q Consensus       393 ~~L~l~~~-~~~~~~~~~~~~~l~~L~~L~ls~-~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  470 (650)
                      ..++++++ .++ .+|.  +..+++|++|+|++ |.+++..+..|..+++|++|+|++|++.++.+..|.++++|++|+|
T Consensus        11 ~~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            45678877 676 6776  88889999999996 9999777788999999999999999999988889999999999999


Q ss_pred             cCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhH
Q 043523          471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMM  517 (650)
Q Consensus       471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~  517 (650)
                      ++|++....  +..+..++ |+.|++++|++.+.+...|+..+....
T Consensus        88 ~~N~l~~~~--~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~  131 (347)
T 2ifg_A           88 SFNALESLS--WKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEG  131 (347)
T ss_dssp             CSSCCSCCC--STTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTT
T ss_pred             CCCccceeC--HHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhC
Confidence            999998553  33444444 999999999999999999998876543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.15  E-value=6.5e-09  Score=104.55  Aligned_cols=83  Identities=12%  Similarity=0.111  Sum_probs=62.7

Q ss_pred             chhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccC
Q 043523          551 VETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS  630 (650)
Q Consensus       551 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~  630 (650)
                      +....+..+.+|+.+.+.++.+..+...+|.+|.+|+.+.|..+ ++.+...+|.+|++|+.+.+..+ ++.+...+|.+
T Consensus       277 i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~  354 (379)
T 4h09_A          277 VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEG  354 (379)
T ss_dssp             ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence            34445567788888888888777777788888888888888754 66677788888888888888754 66677778877


Q ss_pred             CCCCC
Q 043523          631 LNFLS  635 (650)
Q Consensus       631 l~~L~  635 (650)
                      ++.++
T Consensus       355 c~~~~  359 (379)
T 4h09_A          355 SSITK  359 (379)
T ss_dssp             SSCCC
T ss_pred             CCCCc
Confidence            75443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.06  E-value=5.6e-10  Score=110.91  Aligned_cols=114  Identities=15%  Similarity=0.121  Sum_probs=89.4

Q ss_pred             CEEeCCCC-CCCCCCCCCCCCCCcccEEEccC-CcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEcc
Q 043523           24 ETLDLSEN-QLLQGSLPNFPKNSSLRNLILSG-TGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFS  101 (650)
Q Consensus        24 ~~L~ls~~-~i~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~  101 (650)
                      ..++++++ .++.. +. |..+++|++|+|++ |.+.+..+..|.++++|++|+|++|++++..|.+|.++++|++|+|+
T Consensus        11 ~~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            34688887 77543 33 88888899999986 88886666788999999999999999998888888999999999999


Q ss_pred             CCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhc
Q 043523          102 SNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQ  139 (650)
Q Consensus       102 ~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  139 (650)
                      +|++..+++.++....|+.|++.+|.+...-...++..
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~  126 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR  126 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHH
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCccCCCccHHHHH
Confidence            99998887766665559999999998875443333433

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.00  E-value=2.2e-08  Score=100.61  Aligned_cols=285  Identities=11%  Similarity=0.067  Sum_probs=178.4

Q ss_pred             CCcccEEEeccC--cCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEEC
Q 043523          294 ISSIRLLDLHSN--QLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDL  371 (650)
Q Consensus       294 l~~L~~L~l~~~--~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l  371 (650)
                      ..+++.+.+...  .+....+..|.+|+.+++.. .++.+....+..+ +++.+.+..+ +.......+..+ +|+.+.+
T Consensus        45 ~~~i~~v~ip~~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~l  120 (379)
T 4h09_A           45 RDRISEVRVNSGITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEF  120 (379)
T ss_dssp             GGGCSEEEECTTEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEEC
T ss_pred             ccCCEEEEeCCCccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccC
Confidence            456777777654  34555666777788888754 3667777777655 5666655543 333333334333 6777777


Q ss_pred             cCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCcccc------------ccchhcccCC
Q 043523          372 SNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQG------------VVPKSLANCN  439 (650)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~------------~~~~~~~~l~  439 (650)
                      .++- ......++...   +++.+.+..+ +. .+....|..+..++...+.......            .....+..+.
T Consensus       121 p~~~-~~i~~~~F~~~---~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (379)
T 4h09_A          121 PGAT-TEIGNYIFYNS---SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK  194 (379)
T ss_dssp             CTTC-CEECTTTTTTC---CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred             CCcc-ccccccccccc---eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence            6542 21222222221   4555555433 22 4445556677777777665543211            1122334445


Q ss_pred             CCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhh
Q 043523          440 MLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVA  519 (650)
Q Consensus       440 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~  519 (650)
                      .+..+.+..... ......+..+..|+.+.+..+ +....  ...+.++..|+.+.+..+                    
T Consensus       195 ~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~--~~~f~~~~~L~~i~lp~~--------------------  250 (379)
T 4h09_A          195 TGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLG--DGAFYGMKALDEIAIPKN--------------------  250 (379)
T ss_dssp             CCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEEC--TTTTTTCSSCCEEEECTT--------------------
T ss_pred             ccccccccccee-EEeecccccccccceeeeccc-eeEEc--cccccCCccceEEEcCCC--------------------
Confidence            555555554422 223445566677777766544 22222  445566666766666553                    


Q ss_pred             hcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCccc
Q 043523          520 ETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGS  599 (650)
Q Consensus       520 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~  599 (650)
                                                  +..+....+..+..++.+.+..+ +..+...+|.+|.+|+.+.+.++.++.+
T Consensus       251 ----------------------------v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I  301 (379)
T 4h09_A          251 ----------------------------VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETL  301 (379)
T ss_dssp             ----------------------------CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred             ----------------------------ccEeCccccceeehhcccccccc-ceecccccccccccccccccccccccee
Confidence                                        22334445567888888888654 5557778899999999999999999988


Q ss_pred             CCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCC
Q 043523          600 IPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN  642 (650)
Q Consensus       600 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n  642 (650)
                      ...+|.+|.+|+.+++..+ ++.+...+|.+|++|+.+.+..+
T Consensus       302 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          302 EPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             hhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            8999999999999999854 77788899999999999998654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.85  E-value=1.7e-09  Score=106.38  Aligned_cols=84  Identities=14%  Similarity=0.194  Sum_probs=53.7

Q ss_pred             CCCcccEEeCCCCccccCCCcccc---CCcCCCEEeCccccCccc----CCcCccCCCCCCeeeCCCCcCCccCCccccC
Q 043523          558 VPNIFTSIDFSSNNFEGPIPEEMG---RFKSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGKIPAQLAS  630 (650)
Q Consensus       558 ~~~~l~~L~l~~~~~~~~~~~~~~---~l~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~  630 (650)
                      .+|+|+.|++.+|.+.+.....+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|++++|.++......++.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            467888888888877643222222   467888888888887753    2333455678888888888777554444443


Q ss_pred             -CCCCCeEEccCCc
Q 043523          631 -LNFLSVLNLSYNN  643 (650)
Q Consensus       631 -l~~L~~L~l~~n~  643 (650)
                       +  ...++++.++
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             3  4567777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.79  E-value=1.1e-09  Score=107.89  Aligned_cols=181  Identities=15%  Similarity=0.145  Sum_probs=108.3

Q ss_pred             ccCccEEEccCccCCC----cC----CCcccCCCCCccEEEcCCCc-cccccchhcccCCCCCEEeCCCCccccccchhh
Q 043523          389 ETTLGVLNLGRNNLNG----TL----SDTIFPRNCGLQILDLGGNQ-LQGVVPKSLANCNMLQVLDLKNNHISDNFPCWL  459 (650)
Q Consensus       389 ~~~L~~L~l~~~~~~~----~~----~~~~~~~l~~L~~L~ls~~~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  459 (650)
                      +++|+.|.+......+    .+    ....+..+++|+.|++++|. +.  .+. + .+++|+.|+|..|.+.......+
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~--l~~-~-~~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS--IGK-K-PRPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB--CCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce--ecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence            3488999886643210    00    11234567888888888873 22  222 3 37888888888888776444445


Q ss_pred             h--cCCCCCeEEccC--cccceec---CCCCCC--CCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccc
Q 043523          460 G--NASSLQVLVLQS--NNFSGHI---SCPRNN--VSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHL  530 (650)
Q Consensus       460 ~--~~~~L~~L~l~~--n~~~~~~---~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l  530 (650)
                      .  .+|+|++|+|+.  +......   .+...+  ..+|+|++|++++|.+.+.....                      
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~----------------------  271 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM----------------------  271 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH----------------------
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH----------------------
Confidence            4  688888888753  2211110   111122  34788888888888764211100                      


Q ss_pred             eeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCC----ccccCCcCCCEEeCccccCcccCCcCccC
Q 043523          531 RYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIP----EEMGRFKSLYALNMSHNALTGSIPSSFGN  606 (650)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~----~~~~~l~~L~~L~ls~n~i~~~~~~~~~~  606 (650)
                                          +.  ....++.|++|+|+.|.+.+...    ..+..+++|+.|++++|.|++.....+..
T Consensus       272 --------------------la--~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          272 --------------------FL--ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             --------------------HH--HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             --------------------HH--hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence                                11  11346788888888888775432    23355688888888888888654444443


Q ss_pred             -CCCCCeeeCCCCc
Q 043523          607 -LKQIESLDLSMNN  619 (650)
Q Consensus       607 -l~~L~~L~l~~n~  619 (650)
                       +  ...+++++++
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             2  3457777776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=3.9e-08  Score=87.17  Aligned_cols=111  Identities=19%  Similarity=0.129  Sum_probs=49.5

Q ss_pred             CccEEEccCc-cCCCcCC---CcccCCCCCccEEEcCCCcccccc----chhcccCCCCCEEeCCCCcccccc----chh
Q 043523          391 TLGVLNLGRN-NLNGTLS---DTIFPRNCGLQILDLGGNQLQGVV----PKSLANCNMLQVLDLKNNHISDNF----PCW  458 (650)
Q Consensus       391 ~L~~L~l~~~-~~~~~~~---~~~~~~l~~L~~L~ls~~~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~----~~~  458 (650)
                      .|++|++++| .+.+.-.   ...+...++|++|++++|.+.+.+    ..++...++|++|+|++|.+.+..    ...
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~  116 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA  116 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence            5555666555 5442210   111334455555555555554322    223334455555555555555422    223


Q ss_pred             hhcCCCCCeEEc--cCcccceec--CCCCCCCCCCCCCeeeCCCccc
Q 043523          459 LGNASSLQVLVL--QSNNFSGHI--SCPRNNVSWPLLQIVDLASNKF  501 (650)
Q Consensus       459 ~~~~~~L~~L~l--~~n~~~~~~--~~~~~~~~~~~L~~L~l~~n~~  501 (650)
                      +...++|++|+|  ++|.+....  .+...+...+.|++|++++|.+
T Consensus       117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            334455555555  445544221  0122233334455555555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.53  E-value=1.4e-08  Score=87.19  Aligned_cols=87  Identities=14%  Similarity=0.077  Sum_probs=75.0

Q ss_pred             CCcccEEeCCCCccccCCCccccCCcCCCEEeCccc-cCcccCCcCccCC----CCCCeeeCCCCc-CCccCCccccCCC
Q 043523          559 PNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHN-ALTGSIPSSFGNL----KQIESLDLSMNN-LSGKIPAQLASLN  632 (650)
Q Consensus       559 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n-~i~~~~~~~~~~l----~~L~~L~l~~n~-i~~~~~~~l~~l~  632 (650)
                      ...|++||+++|.++......+.++++|+.|+|++| .|++.....+..+    ++|++|++++|. |++..-..+++++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            356999999999998887888899999999999999 4887766667664    489999999995 8887777889999


Q ss_pred             CCCeEEccCCcCc
Q 043523          633 FLSVLNLSYNNLV  645 (650)
Q Consensus       633 ~L~~L~l~~n~~~  645 (650)
                      +|+.|++++|+..
T Consensus       140 ~L~~L~L~~c~~I  152 (176)
T 3e4g_A          140 NLKYLFLSDLPGV  152 (176)
T ss_dssp             TCCEEEEESCTTC
T ss_pred             CCCEEECCCCCCC
Confidence            9999999999743

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.52  E-value=1.9e-08  Score=89.23  Aligned_cols=121  Identities=13%  Similarity=0.155  Sum_probs=85.4

Q ss_pred             cccccCCCcccEEECcCc-cccccCChhhhh--ccccCccEEEccCccCCCcCC---CcccCCCCCccEEEcCCCccccc
Q 043523          357 PESVCKGIYFQVLDLSNN-NLSGTIPACLIA--QSETTLGVLNLGRNNLNGTLS---DTIFPRNCGLQILDLGGNQLQGV  430 (650)
Q Consensus       357 ~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~ls~~~i~~~  430 (650)
                      ...+...+.|++|++++| .+.......+..  ...++|++|++++|.+.+...   ...+...++|++|++++|.|.+.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            345556777888888887 765432222211  112378888888888764321   12245667899999999999865


Q ss_pred             ----cchhcccCCCCCEEeC--CCCccccccc----hhhhcCCCCCeEEccCcccce
Q 043523          431 ----VPKSLANCNMLQVLDL--KNNHISDNFP----CWLGNASSLQVLVLQSNNFSG  477 (650)
Q Consensus       431 ----~~~~~~~l~~L~~L~L--s~n~l~~~~~----~~~~~~~~L~~L~l~~n~~~~  477 (650)
                          +..++...++|++|+|  ++|.+++...    ..+...++|++|++++|.+..
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence                3566778899999999  8899987443    455667999999999999863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.49  E-value=2.7e-08  Score=85.30  Aligned_cols=83  Identities=13%  Similarity=0.080  Sum_probs=41.7

Q ss_pred             CccEEEcCCCccccccchhcccCCCCCEEeCCCCc-cccccchhhhcC----CCCCeEEccCcc-cceecCCCCCCCCCC
Q 043523          416 GLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNH-ISDNFPCWLGNA----SSLQVLVLQSNN-FSGHISCPRNNVSWP  489 (650)
Q Consensus       416 ~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~----~~L~~L~l~~n~-~~~~~~~~~~~~~~~  489 (650)
                      .|+.||+++|.++..+...+..|++|++|+|++|. +++.....+..+    ++|++|+|++|. +++..  ...+..++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G--l~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG--IIALHHFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH--HHHGGGCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH--HHHHhcCC
Confidence            35555555555554444455555555555555553 444444444432    355555555554 33222  22334455


Q ss_pred             CCCeeeCCCcc
Q 043523          490 LLQIVDLASNK  500 (650)
Q Consensus       490 ~L~~L~l~~n~  500 (650)
                      +|++|++++|+
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            56666665554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.20  E-value=3e-07  Score=85.40  Aligned_cols=80  Identities=23%  Similarity=0.211  Sum_probs=55.9

Q ss_pred             cCCCcccEEeCCCCccccCC--CccccCCcCCCEEeCccccCcccCCcCccCCC--CCCeeeCCCCcCCccCC-------
Q 043523          557 KVPNIFTSIDFSSNNFEGPI--PEEMGRFKSLYALNMSHNALTGSIPSSFGNLK--QIESLDLSMNNLSGKIP-------  625 (650)
Q Consensus       557 ~~~~~l~~L~l~~~~~~~~~--~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~--~L~~L~l~~n~i~~~~~-------  625 (650)
                      ..++.|+.|+|++|.+.++.  +..+..+++|+.|+|++|+|++.  +.+..+.  +|++|++++|.+++..|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            56778888888888887643  34556778888888888888753  2233333  78888888888875443       


Q ss_pred             ccccCCCCCCeEE
Q 043523          626 AQLASLNFLSVLN  638 (650)
Q Consensus       626 ~~l~~l~~L~~L~  638 (650)
                      ..+..+|+|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            3467778888776

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.06  E-value=3e-06  Score=78.75  Aligned_cols=67  Identities=27%  Similarity=0.325  Sum_probs=55.9

Q ss_pred             cCCcCCCEEeCccccCcc--cCCcCccCCCCCCeeeCCCCcCCccCCccccCCC--CCCeEEccCCcCcccCC
Q 043523          581 GRFKSLYALNMSHNALTG--SIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLN--FLSVLNLSYNNLVGKIP  649 (650)
Q Consensus       581 ~~l~~L~~L~ls~n~i~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~--~L~~L~l~~n~~~~~~p  649 (650)
                      ..+++|+.|+|++|+|++  .++..++.+++|+.|+|++|.+++.  +.+..+.  +|+.|++++|++.+.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            568999999999999997  3446667899999999999999976  3344444  99999999999998776

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.57  E-value=6.8e-05  Score=65.57  Aligned_cols=110  Identities=9%  Similarity=0.054  Sum_probs=56.8

Q ss_pred             CccEEEccCc-cCCCcC---CCcccCCCCCccEEEcCCCccccccc----hhcccCCCCCEEeCCCCccccccch----h
Q 043523          391 TLGVLNLGRN-NLNGTL---SDTIFPRNCGLQILDLGGNQLQGVVP----KSLANCNMLQVLDLKNNHISDNFPC----W  458 (650)
Q Consensus       391 ~L~~L~l~~~-~~~~~~---~~~~~~~l~~L~~L~ls~~~i~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~----~  458 (650)
                      .|+.|+++++ .+.+.-   ....+...+.|+.|+|++|+|.+...    +++...+.|++|+|++|.|++....    .
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a  121 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS  121 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence            6777777764 544221   11124455567777777776654432    3344556677777777766653332    2


Q ss_pred             hhcCCCCCeEEccCc---ccceec--CCCCCCCCCCCCCeeeCCCcc
Q 043523          459 LGNASSLQVLVLQSN---NFSGHI--SCPRNNVSWPLLQIVDLASNK  500 (650)
Q Consensus       459 ~~~~~~L~~L~l~~n---~~~~~~--~~~~~~~~~~~L~~L~l~~n~  500 (650)
                      +..-+.|++|+|++|   .+....  .+...+..-+.|++|+++.|.
T Consensus       122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            333455666666644   222110  012333444566666665554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.39  E-value=5.5e-05  Score=66.16  Aligned_cols=115  Identities=10%  Similarity=0.128  Sum_probs=76.1

Q ss_pred             ccCCCcccEEECcCc-ccccc----CChhhhhccccCccEEEccCccCCCcCCCc---ccCCCCCccEEEcCCCcccccc
Q 043523          360 VCKGIYFQVLDLSNN-NLSGT----IPACLIAQSETTLGVLNLGRNNLNGTLSDT---IFPRNCGLQILDLGGNQLQGVV  431 (650)
Q Consensus       360 l~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~ls~~~i~~~~  431 (650)
                      +..-+.|++|+++++ .+.+.    +...+..  -+.|+.|+|++|.+.+.....   .+...+.|++|+|++|.|...+
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~--N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACN--SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTT--CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhh--CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            344566777777764 55432    2222222  237888888888776432221   2446678999999999998653


Q ss_pred             ----chhcccCCCCCEEeCCCC---ccccc----cchhhhcCCCCCeEEccCcccc
Q 043523          432 ----PKSLANCNMLQVLDLKNN---HISDN----FPCWLGNASSLQVLVLQSNNFS  476 (650)
Q Consensus       432 ----~~~~~~l~~L~~L~Ls~n---~l~~~----~~~~~~~~~~L~~L~l~~n~~~  476 (650)
                          .+++...+.|++|+|++|   .+.+.    +...+..-+.|++|+++.|.+.
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence                355667788999999876   44542    3345667899999999887654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.24  E-value=0.00053  Score=55.97  Aligned_cols=68  Identities=19%  Similarity=0.203  Sum_probs=45.5

Q ss_pred             EEeCCCCccc--cccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHh
Q 043523          443 VLDLKNNHIS--DNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEE  515 (650)
Q Consensus       443 ~L~Ls~n~l~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~  515 (650)
                      .++.+++.++  . +|..+  .++|++|+|++|+++...  ...+..+++|+.|+|++|++.+.+...|+..+..
T Consensus        12 ~v~Cs~~~L~~~~-vP~~l--p~~l~~L~Ls~N~l~~l~--~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~   81 (130)
T 3rfe_A           12 LVDCGRRGLTWAS-LPTAF--PVDTTELVLTGNNLTALP--PGLLDALPALRTAHLGANPWRCDCRLVPLRAWLA   81 (130)
T ss_dssp             EEECCSSCCCTTT-SCSCC--CTTCSEEECTTSCCSSCC--TTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHH
T ss_pred             EEEeCCCCCcccc-CCCCC--CcCCCEEECCCCcCCccC--hhhhhhccccCEEEecCCCeeccCccHHHHHHHH
Confidence            5555666555  3 33221  345667777777666544  4556677788888999999999999988877654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.14  E-value=0.00088  Score=54.67  Aligned_cols=55  Identities=16%  Similarity=0.183  Sum_probs=29.3

Q ss_pred             EEeCCCCccc--cCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCC
Q 043523          564 SIDFSSNNFE--GPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS  621 (650)
Q Consensus       564 ~L~l~~~~~~--~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~  621 (650)
                      .++.+++.++  .+.. .+.  ++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~-~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT-AFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCS-CCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCC-CCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5566666554  2221 111  35666666666666555555555666666666666553

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=87.72  E-value=1.6  Score=33.13  Aligned_cols=49  Identities=16%  Similarity=0.111  Sum_probs=35.0

Q ss_pred             CCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCC
Q 043523            6 ECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGT   55 (650)
Q Consensus         6 ~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~   55 (650)
                      +-.++.+...+|..|+.|+.+.+-.+ ++.+...+|.+|.+|+.+.+...
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            44567677777777777777777665 45667777777777777777654

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=82.83  E-value=1.5  Score=33.16  Aligned_cols=49  Identities=12%  Similarity=0.072  Sum_probs=39.7

Q ss_pred             CCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCC
Q 043523          569 SNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMN  618 (650)
Q Consensus       569 ~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n  618 (650)
                      +..++.+...+|.+|.+|+.+.|-.+ ++.+...+|.+|.+|+.+.+.+.
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            44566677888999999999999874 55578889999999999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	650
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-11
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.1 bits (188), Expect = 6e-16
 Identities = 54/277 (19%), Positives = 99/277 (35%), Gaps = 3/277 (1%)

Query: 349 NNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSD 408
           N + +GV+ ++  +      LDLS  NL    P      +   L  L +G  N       
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 409 TIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVL 468
               +   L  L +    + G +P  L+    L  LD   N +S   P  + +  +L  +
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 469 VLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELK 528
               N  SG I          L   + ++ N+ +G++   +       +           
Sbjct: 155 TFDGNRISGAI-PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA 213

Query: 529 HLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYA 588
            + +    N         ++      +    N    +D  +N   G +P+ + + K L++
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN-LNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 589 LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 625
           LN+S N L G IP   GNL++ +    + N      P
Sbjct: 273 LNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.9 bits (146), Expect = 1e-10
 Identities = 47/199 (23%), Positives = 73/199 (36%), Gaps = 3/199 (1%)

Query: 4   LSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPD 63
           ++   + G  P+ + Q+ TL TLD S N L     P+     +L  +   G   SG +PD
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 64  SIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDL 123
           S G+   L        N      P       L  +D S N   G    L  S        
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 124 SFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPE 183
              N              NLN + L +N + G++P+ L  L  L +L +S N    ++P+
Sbjct: 228 LAKNSLAFDLGKVGLSK-NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 184 ISNVSSSVLFDLDLSGNRL 202
             N+          + N+ 
Sbjct: 287 GGNLQR--FDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.8 bits (143), Expect = 3e-10
 Identities = 47/274 (17%), Positives = 88/274 (32%), Gaps = 19/274 (6%)

Query: 133 SSTFWEQLVNLNLVLLSHNSLNG--SIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSS 190
           + T   ++ NL+L   S  +L     IP SL  LP L  L++            +    +
Sbjct: 45  TDTQTYRVNNLDL---SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 191 VLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLS 250
            L  L ++            + +++ L TLD S N             + P + +   L 
Sbjct: 102 QLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNAL--------SGTLPPSISSLPNLV 152

Query: 251 GLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQE--PYSISSIRLLDLHSNQLR 308
           G+    N+I G IP+          +     + L   +         +   L  +  +  
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD 212

Query: 309 GNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQV 368
            ++   S   +   +   +                     NN + G +P+ + +  +   
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 369 LDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNL 402
           L++S NNL G IP      +     V     N  
Sbjct: 273 LNVSFNNLCGEIPQG---GNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.2 bits (139), Expect = 9e-10
 Identities = 60/270 (22%), Positives = 103/270 (38%), Gaps = 17/270 (6%)

Query: 47  LRNLILSGTGFSG--TLPDSIGNLENLTWVEVRRC-NFTGPIPPSMANLTQLFHMDFSSN 103
           + NL LSG        +P S+ NL  L ++ +    N  GPIPP++A LTQL ++  +  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 104 HFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL 163
           + SG IP                N   G        L NL  +    N ++G+IP S   
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 164 LPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLS 223
                 L+ S     N+L      + + L    +  +R       S++F           
Sbjct: 172 FSK---LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 224 SNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHN 283
           +               +  +     L+GLD+ NN+I G +P  + ++    L+ LN+S N
Sbjct: 229 AKNS--------LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL--KFLHSLNVSFN 278

Query: 284 LLV-SLQEPYSISSIRLLDLHSNQLRGNIP 312
            L   + +  ++    +    +N+     P
Sbjct: 279 NLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 46/240 (19%), Positives = 73/240 (30%), Gaps = 3/240 (1%)

Query: 413 RNCGLQILDLGGNQLQGV--VPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL 470
           +   +  LDL G  L     +P SLAN   L  L +   +             +    + 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHL 530
            ++           +    L+ +    +            L     +  +    S     
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 531 RYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALN 590
            Y   S  F  + ++      +            +D S N  EG      G  K+     
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN-TQKI 226

Query: 591 MSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT 650
                         G  K +  LDL  N + G +P  L  L FL  LN+S+NNL G+IP 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 48/283 (16%), Positives = 100/283 (35%), Gaps = 17/283 (6%)

Query: 78  RCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIP---SLHKSRNLKYLDLSFNNLSGGISS 134
              + G +  +     ++ ++D S  +     P   SL     L +L +   N   G   
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 135 TFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFD 194
               +L  L+ + ++H +++G+IP  L  +  L TL  S N     LP   +   +++  
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 195 LDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDI 254
               GNR+ G +P S     +   ++ +S N+ +     +     +              
Sbjct: 155 -TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF----------VD 203

Query: 255 SNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPH- 313
            +  +     + ++             ++L   L +     ++  LDL +N++ G +P  
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263

Query: 314 --MSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVG 354
                    ++ S N+        GN        +A N  L G
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 3   DLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSG 54
           DL    + G  P+ + Q+  L +L++S N  L G +P             + 
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNN-LCGEIPQGGNLQRFDVSAYAN 300

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.6 bits (187), Expect = 1e-15
 Identities = 69/439 (15%), Positives = 130/439 (29%), Gaps = 65/439 (14%)

Query: 205 PVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIP 264
             PI+ IF    L        +  +  L  +         +  Q++ L      I     
Sbjct: 9   DTPINQIFTDTAL-------AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGI----- 56

Query: 265 NWIWEVGN-GNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDY 323
             I  V    NL  +N S+N L  +    +++ +  +   +N    +I  ++  T+    
Sbjct: 57  KSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL-MNNNQIADITPLANLTNLTGL 115

Query: 324 SNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPAC 383
           +  +      D    ++       ++N++  +   S    +                   
Sbjct: 116 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS----------FGNQV 165

Query: 384 LIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQV 443
              +    L  L     + N     ++  +   L+ L    NQ+  + P        L  
Sbjct: 166 TDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDE 223

Query: 444 LDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSG 503
           L L  N + D     L + ++L  L L +N  S              L  + L +N+ S 
Sbjct: 224 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS----GLTKLTELKLGANQISN 277

Query: 504 RLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFT 563
                 L  +  + + E +                                        T
Sbjct: 278 ISPLAGLTALTNLELNENQLEDISPISNL---------------------------KNLT 310

Query: 564 SIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK 623
            +    NN     P  +     L  L  ++N ++    SS  NL  I  L    N +S  
Sbjct: 311 YLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDL 366

Query: 624 IPAQLASLNFLSVLNLSYN 642
            P  LA+L  ++ L L+  
Sbjct: 367 TP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.6 bits (187), Expect = 2e-15
 Identities = 72/407 (17%), Positives = 125/407 (30%), Gaps = 43/407 (10%)

Query: 67  NLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFN 126
            L       + + N T  +  S  +L Q+  +          I  +    NL  ++ S N
Sbjct: 20  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNN 76

Query: 127 NLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISN 186
            L+         +LV++ +       +      +      L    +++      L  ++ 
Sbjct: 77  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 187 VSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQ 246
           +  S     D+S       +                +     RL ++S+K   I +L   
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 247 SQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQ 306
           + L  L  +NNQI    P  I      NL+ L+L+ N L  +    S++++  LDL +NQ
Sbjct: 197 TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 252

Query: 307 LRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYF 366
           +    P              +     + +    + T      N          +      
Sbjct: 253 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL---EDISPISNLKNL 309

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
             L L  NN+S   P                                   LQ L    N+
Sbjct: 310 TYLTLYFNNISDISP-----------------------------VSSLTKLQRLFFANNK 340

Query: 427 LQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSN 473
           +      SLAN   +  L   +N ISD  P  L N + +  L L   
Sbjct: 341 VSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.8 bits (172), Expect = 1e-13
 Identities = 64/382 (16%), Positives = 123/382 (32%), Gaps = 28/382 (7%)

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
             L   N++  +S T  +Q+  L    L   S++G     +  L NL  +  SNNQ  + 
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTD- 80

Query: 181 LPEISNVSS--SVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPR 238
           +  + N++    +L + +   +        ++         +       +   L   +  
Sbjct: 81  ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 140

Query: 239 VIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIR 298
              I    +      +       ++ +         L  L++S N +  +     ++++ 
Sbjct: 141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE 200

Query: 299 LLDLHSNQLRGNIPHMS-TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIP 357
            L   +NQ+    P    TN   +  + N    I       ++       ANN +  + P
Sbjct: 201 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS--LTNLTDLDLANNQISNLAP 258

Query: 358 ESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGL 417
            S    +    L L  N +S   P          L  L     N N     +       L
Sbjct: 259 LSGLTKL--TELKLGANQISNISPLA-------GLTALTNLELNENQLEDISPISNLKNL 309

Query: 418 QILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSG 477
             L L  N +  + P  +++   LQ L   NN +SD     L N +++  L    N  S 
Sbjct: 310 TYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD 365

Query: 478 HISCPRNNVSWPLLQIVDLASN 499
                    +   +  + L   
Sbjct: 366 LTPL----ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 64.6 bits (156), Expect = 9e-12
 Identities = 56/349 (16%), Positives = 124/349 (35%), Gaps = 36/349 (10%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
           TL     G+  K  + +  +  L  ++ S NQL    +      + L +++++    +  
Sbjct: 48  TLQADRLGI--KSIDGVEYLNNLTQINFSNNQL--TDITPLKNLTKLVDILMNNNQIADI 103

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFH-------------MDFSSNHFSG 107
            P +         +   +     P+                                F  
Sbjct: 104 TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 163

Query: 108 HIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNL 167
            +  L    NL  L+    + +     +   +L NL  ++ ++N ++   P  +    NL
Sbjct: 164 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNL 221

Query: 168 ETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKF 227
           + L L+ NQ ++ +  ++++++  L DLDL+ N++    P+S + +L  L       +  
Sbjct: 222 DELSLNGNQLKD-IGTLASLTN--LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI 278

Query: 228 SRLRLASSK---------PRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFL 278
           S L   ++             I  + N   L+ L +  N I    P          L  L
Sbjct: 279 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS----SLTKLQRL 334

Query: 279 NLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMS-TNTSYVDYSNN 326
             ++N +  +    ++++I  L    NQ+    P  + T  + +  ++ 
Sbjct: 335 FFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.8 bits (133), Expect = 7e-09
 Identities = 74/436 (16%), Positives = 128/436 (29%), Gaps = 65/436 (14%)

Query: 160 SLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYT 219
            +F    L     +     N    +S      +  L      ++    I  +  L NL  
Sbjct: 14  QIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQ 70

Query: 220 LDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLN 279
           ++ S+N+ +           I  LKN ++L  + ++NNQI    P        G   F N
Sbjct: 71  INFSNNQLTD----------ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 120

Query: 280 LSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFM 339
              ++                          I  +S  +         F     D+    
Sbjct: 121 QITDIDPLKNLTNLN--------RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLA 172

Query: 340 SETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGR 399
           + T       +S        + K    + L  +NN +S   P  ++    T L  L+L  
Sbjct: 173 NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL----TNLDELSLNG 228

Query: 400 NNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWL 459
           N L    +         L  LDL  NQ+  + P  L+    L  L L  N IS+  P   
Sbjct: 229 NQLKDIGT---LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAG 283

Query: 460 GNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVA 519
             A +              +       +   L  + L  N  S       L         
Sbjct: 284 LTALTNL------ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL--------- 328

Query: 520 ETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEE 579
                ++L+ L    ++N+  +V          + L  + NI   +    N      P  
Sbjct: 329 -----TKLQRLF--FANNKVSDV----------SSLANLTNI-NWLSAGHNQISDLTP-- 368

Query: 580 MGRFKSLYALNMSHNA 595
           +     +  L ++  A
Sbjct: 369 LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.5 bits (122), Expect = 2e-07
 Identities = 45/267 (16%), Positives = 93/267 (34%), Gaps = 25/267 (9%)

Query: 395 LNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDN 454
             LG+ N+  T+S T   +   +  L      ++ +    +   N L  ++  NN ++D 
Sbjct: 27  TVLGKTNVTDTVSQTDLDQ---VTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI 81

Query: 455 FPCWLGNASSLQVLVL------------QSNNFSGHISCPRNNVSWPLLQIVDLASNKFS 502
            P  L N + L  +++               N +G             L+ +   +    
Sbjct: 82  TP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 503 GRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIF 562
              +   +  +  +   +  S          +++    E     + K  +  +L      
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199

Query: 563 TSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG 622
            S+  ++N      P  +G   +L  L+++ N L      +  +L  +  LDL+ N +S 
Sbjct: 200 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 255

Query: 623 KIPAQLASLNFLSVLNLSYNNLVGKIP 649
             P  L+ L  L+ L L  N +    P
Sbjct: 256 LAP--LSGLTKLTELKLGANQISNISP 280

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.5 bits (171), Expect = 9e-14
 Identities = 42/262 (16%), Positives = 87/262 (33%), Gaps = 31/262 (11%)

Query: 21  PTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN 80
           P    LDL  N++ +    +F    +L  LIL     S   P +   L  L  + + +  
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 81  FTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQL 140
                      L +L   +         + +      +  L  +    SG  +  F   +
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GM 149

Query: 141 VNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEI---------------- 184
             L+ + ++  ++  +IP+ L   P+L  L L  N+                        
Sbjct: 150 KKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 185 -------SNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKP 237
                  S  ++  L +L L+ N+L        + + + +  + L +N  S +      P
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKL--VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 238 RVIPILKNQSQLSGLDISNNQI 259
                   ++  SG+ + +N +
Sbjct: 265 --PGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.4 bits (145), Expect = 1e-10
 Identities = 42/231 (18%), Positives = 77/231 (33%), Gaps = 12/231 (5%)

Query: 417 LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS 476
             +LDL  N++  +      N   L  L L NN IS   P        L+ L L  N   
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 477 G---HISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV 533
                +      +     +I  +  + F+G      +      + +        + ++ +
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 534 ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSH 593
                            + T+   +P   T +    N         +    +L  L +S 
Sbjct: 153 SYIRIAD--------TNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 594 NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
           N+++     S  N   +  L L+ N L  K+P  LA   ++ V+ L  NN+
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 254

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 29/154 (18%), Positives = 52/154 (33%), Gaps = 3/154 (1%)

Query: 2   LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTL 61
           L  +     G        +  L  + +++  +        P   SL  L L G   +   
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVD 187

Query: 62  PDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYL 121
             S+  L NL  + +   + +     S+AN   L  +  ++N        L   + ++ +
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 247

Query: 122 DLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNG 155
            L  NN+S   S+ F     N      S  SL  
Sbjct: 248 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.0 bits (131), Expect = 8e-09
 Identities = 52/314 (16%), Positives = 104/314 (33%), Gaps = 28/314 (8%)

Query: 142 NLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNR 201
           +L +V  S   L   +P+ L   P+   L L NN+    + +    +   L  L L  N+
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNK 66

Query: 202 LEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPG 261
           +    P +    L  L  L LS N+   L             K    L  L +  N+I  
Sbjct: 67  ISKISPGAF-APLVKLERLYLSKNQLKEL-----------PEKMPKTLQELRVHENEITK 114

Query: 262 EIPNWIWEVGNGNLNFLNLSHNLLVSLQEP--YSISSIRLLDLHSNQLRGNIPHMSTNTS 319
              +    +    +  L  +      ++      +  +  + +    +      +  + +
Sbjct: 115 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT 174

Query: 320 YVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGT 379
            +    N  T + A     ++       + NS+  V   S+    + + L L+NN L   
Sbjct: 175 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 234

Query: 380 IPACLIAQSETTLGVLNLGRNNLNGTLSDTIFP-----RNCGLQILDLGGNQLQ--GVVP 432
                  +    + V+ L  NN++   S+   P     +      + L  N +Q   + P
Sbjct: 235 PGGLADHKY---IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 291

Query: 433 KSLANCNMLQVLDL 446
            +     +   + L
Sbjct: 292 STFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (124), Expect = 6e-08
 Identities = 51/292 (17%), Positives = 96/292 (32%), Gaps = 30/292 (10%)

Query: 365 YFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGG 424
           + +V+  S+  L   +P  L         +L+L  N +   + D  F     L  L L  
Sbjct: 11  HLRVVQCSDLGLE-KVPKDL----PPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILIN 64

Query: 425 NQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVL-----VLQSNNFSGHI 479
           N++  + P + A    L+ L L  N + +           L+V       ++ + F+G  
Sbjct: 65  NKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN 124

Query: 480 SCPRNNVSWPLLQIVDLASNKFSGRLS-QKWLLTMEEMMVAETKSGSELKHLRYVISSNQ 538
                 +    L+   + +  F G        +    +          L  L   +  N+
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH--LDGNK 182

Query: 539 FYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTG 598
                       V+   LK  N    +  S N+        +     L  L++++N L  
Sbjct: 183 I---------TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 232

Query: 599 SIPSSFGNLKQIESLDLSMNNLSG------KIPAQLASLNFLSVLNLSYNNL 644
            +P    + K I+ + L  NN+S         P         S ++L  N +
Sbjct: 233 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 42/281 (14%), Positives = 88/281 (31%), Gaps = 17/281 (6%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
            +LDL NN ++         ++   L  L L  N ++       F     L+ L L  NQ
Sbjct: 34  ALLDLQNNKITEIKDGDF--KNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQ 90

Query: 427 LQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNV 486
           L+ +  K       LQ L +  N I+          + + V+ L +N             
Sbjct: 91  LKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 487 SWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTV 546
               L  + +A    +  + Q    ++ E+ +   K           +++     +    
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 547 TVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSF-- 604
                   L   P++       +NN    +P  +   K +  + + +N ++    + F  
Sbjct: 207 ISAVDNGSLANTPHLREL--HLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 605 ----GNLKQIESLDLSMNNLSGK--IPAQLASLNFLSVLNL 639
                       + L  N +      P+    +   + + L
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.3 bits (111), Expect = 3e-06
 Identities = 31/195 (15%), Positives = 63/195 (32%), Gaps = 11/195 (5%)

Query: 296 SIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGV 355
            +R++      L      +  +T+ +D  NN  T I       +         NN +  +
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 356 IPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNC 415
            P +    +  + L LS N L            E           N    +  ++F    
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR------VHENEITKVRKSVFNGLN 124

Query: 416 GLQILDLGGNQLQ--GVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSN 473
            + +++LG N L+  G+   +      L  + + + +I+           SL  L L  N
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGN 181

Query: 474 NFSGHISCPRNNVSW 488
             +   +     ++ 
Sbjct: 182 KITKVDAASLKGLNN 196

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 44/233 (18%), Positives = 81/233 (34%), Gaps = 32/233 (13%)

Query: 414 NCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSN 473
            C L+++      L+  VPK L       +LDL+NN I++       N  +L  L+L +N
Sbjct: 9   QCHLRVVQCSDLGLE-KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINN 65

Query: 474 NFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV 533
             S     P        L+ + L+ N+      +      E  +                
Sbjct: 66  KISKIS--PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV---------------- 107

Query: 534 ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSH 593
              N+  +V  +V     + +++++               G         K L  + ++ 
Sbjct: 108 -HENEITKVRKSVFNGLNQMIVVELGTN-------PLKSSGIENGAFQGMKKLSYIRIAD 159

Query: 594 NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG 646
             +T        +L     L L  N ++    A L  LN L+ L LS+N++  
Sbjct: 160 TNITTIPQGLPPSL---TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 3e-11
 Identities = 45/280 (16%), Positives = 95/280 (33%), Gaps = 23/280 (8%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
           Q LDL+  NL   +   L++Q    +      R+ ++  L++   P    +Q +DL  + 
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQG---VIAFRCPRSFMDQPLAEHFSPFR--VQHMDLSNSV 57

Query: 427 LQGV-VPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNN 485
           ++   +   L+ C+ LQ L L+   +SD     L   S+L  L L   +     +     
Sbjct: 58  IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117

Query: 486 VSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVT 545
            S   L  ++L+          +  +      + +       K+L+    S         
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR----- 172

Query: 546 VTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSH-NALTGSIPSSF 604
                      + PN+       S   +    +E  +   L  L++S    +        
Sbjct: 173 -----------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 221

Query: 605 GNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
           G +  +++L +      G +     +L  L +    +  +
Sbjct: 222 GEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTI 261

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 47/279 (16%), Positives = 85/279 (30%), Gaps = 18/279 (6%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSG- 59
           TLDL+   L      ++L    +       +  +   L        ++++ LS +     
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVI-AFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 60  TLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLK 119
           TL   +     L  + +     + PI  ++A  + L  ++ S               +  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 120 YLDLSFNNLSGGISSTFWEQLV--------NLNLVLLSHNSLNGSIPRSLFLLPNLETLW 171
            LD    +     +    +  V         LNL     N     +   +   PNL  L 
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 172 LSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSR-- 229
           LS++              + L  L LS      P  +  + E+  L TL +         
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 230 LRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIW 268
             L  + P +     N S  +   I+   I  +    IW
Sbjct: 242 QLLKEALPHLQI---NCSHFT--TIARPTIGNKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 5e-07
 Identities = 36/262 (13%), Positives = 85/262 (32%), Gaps = 7/262 (2%)

Query: 74  VEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGIS 133
           +++   N    +   + +   +       +     +        ++++DLS + +     
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 134 STFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLF 193
                Q   L  + L    L+  I  +L    NL  L LS     ++    + +  S   
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL--SSCS 121

Query: 194 DLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLD 253
            LD              +       +  ++    S  R    K  +  +++    L  LD
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 254 ISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSIS---SIRLLDLHSNQLRGN 310
           +S++ +        +   N  L  L+LS    +  +    +    +++ L +      G 
Sbjct: 182 LSDSVMLKNDCFQEFFQLN-YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 311 IPHMSTNTSYVDYSNNHFTFIP 332
           +  +     ++  + +HFT I 
Sbjct: 241 LQLLKEALPHLQINCSHFTTIA 262

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (148), Expect = 1e-10
 Identities = 51/450 (11%), Positives = 114/450 (25%), Gaps = 25/450 (5%)

Query: 216 NLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEV--GNG 273
           ++ +LD+   + S  R A     ++P+L+       + + +  +       I      N 
Sbjct: 3   DIQSLDIQCEELSDARWAE----LLPLLQQ---CQVVRLDDCGLTEARCKDISSALRVNP 55

Query: 274 NLNFLNLSHNLL-----VSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHF 328
            L  LNL  N L       + +     S ++  L               +S +       
Sbjct: 56  ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 115

Query: 329 TFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQS 388
               +D     +  +            + +   +                         +
Sbjct: 116 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 175

Query: 389 ETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKN 448
            +   +   G   L   L D+               +     +   +A+   L+ L L +
Sbjct: 176 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 235

Query: 449 NHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQK 508
           N + D     L          L++          +        +++    +     L+  
Sbjct: 236 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC--RVLRAKESLKELSLAGN 293

Query: 509 WLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFS 568
            L      ++ ET      +     + S  F     +     +      +    ++    
Sbjct: 294 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 353

Query: 569 SNNFEGPIPEEMGRFKSLYALNMSHNALTG----SIPSSFGNLKQIESLDLSMNNLSGKI 624
                            L  L ++   ++     S+ ++      +  LDLS N L    
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 625 PAQLAS-----LNFLSVLNLSYNNLVGKIP 649
             QL          L  L L       ++ 
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (140), Expect = 1e-09
 Identities = 47/450 (10%), Positives = 107/450 (23%), Gaps = 20/450 (4%)

Query: 23  LETLDLSENQLLQGSLPN-FPKNSSLRNLILSGTGFSG----TLPDSIGNLENLTWVEVR 77
           +++LD+   +L         P     + + L   G +      +  ++     L  + +R
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 78  RCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFW 137
                      +    Q                +      L     +   L     S   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 138 EQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDL 197
                L L+          + +      +L            +        +    D++ 
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 198 SGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNN 257
           +G R+          +L  L          +       +     +    S       SN 
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDN------CRDLCGIVASKASLRELALGSNK 237

Query: 258 QIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTN 317
                +      + + +     L         +        L    S +      +   +
Sbjct: 238 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 297

Query: 318 TSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLS 377
                               ++    +  A   S    +       +  Q+ +    +  
Sbjct: 298 EGARLLCETLLEPGCQLESLWVKSCSFTAA-CCSHFSSVLAQNRFLLELQISNNRLEDAG 356

Query: 378 GTIPACLIAQSETTLGVLNLGRNNLNGTLSDTI---FPRNCGLQILDLGGNQLQGVVPKS 434
                  + Q  + L VL L   +++ +   ++      N  L+ LDL  N L       
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 435 LA-----NCNMLQVLDLKNNHISDNFPCWL 459
           L         +L+ L L + + S+     L
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 3e-07
 Identities = 45/451 (9%), Positives = 104/451 (23%), Gaps = 24/451 (5%)

Query: 44  NSSLRNLILSGTGFSGT-LPDSIGNLENLTWVEVRRCNFTG----PIPPSMANLTQLFHM 98
           +  +++L +     S     + +  L+    V +  C  T      I  ++     L  +
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 99  DFSSNHFSGH-IPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSI 157
           +  SN      +  + +        +   +L     +     +++  L  L         
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 158 PRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNL 217
              L             +             S      +   + L        +    N 
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 218 YTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNF 277
                       L+ +  +   + +                +  +       +G+  L  
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 278 LNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGN 337
           + ++      L     + ++ + +                        +       D G 
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 338 FMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNL 397
            +                +                       +   +        GV  L
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 398 GRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLA----NCNMLQVLDLKNNHISD 453
            +                 L++L L    +      SLA      + L+ LDL NN + D
Sbjct: 361 CQGLGQP---------GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411

Query: 454 NFPCWLGNA-----SSLQVLVLQSNNFSGHI 479
                L  +       L+ LVL    +S  +
Sbjct: 412 AGILQLVESVRQPGCLLEQLVLYDIYWSEEM 442

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 4e-06
 Identities = 56/459 (12%), Positives = 123/459 (26%), Gaps = 20/459 (4%)

Query: 1   TLDLSECGLQGKFPEKIL-QVPTLETLDLSENQLLQGSLPNFPK----NSSLRNLILSGT 55
           +LD+    L      ++L  +   + + L +  L +    +       N +L  L L   
Sbjct: 6   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 56  GFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKS 115
                    +         ++++ +                 +         H+      
Sbjct: 66  ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 125

Query: 116 RNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNN 175
                L                 +  +L+       +                +    N 
Sbjct: 126 DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK--ELTVSNNDINE 183

Query: 176 QFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASS 235
                L +    S   L  L L    +       +   + +  +L   +   ++L     
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 236 KPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSIS 295
                 +L   S+L  L I    I  +    +  V     +   LS        E   + 
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 296 SIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGV 355
              LL+         +   S   +   + ++        +   +S      A    L   
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 356 IPESVCKGIYFQVLDLSNNNLSGTIPACLIA--QSETTLGVLNLGRNNLNG----TLSDT 409
           + +        +VL L++ ++S +  + L A   +  +L  L+L  N L       L ++
Sbjct: 364 LGQPGSV---LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 410 IFPRNCGLQILDLGGNQLQGVVPKSLA----NCNMLQVL 444
           +    C L+ L L        +   L     +   L+V+
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 5e-04
 Identities = 53/455 (11%), Positives = 108/455 (23%), Gaps = 36/455 (7%)

Query: 91  NLTQLFHMDFSSNHFSGHIPS--LHKSRNLKYLDLSFNNLSGGISSTFWEQLV---NLNL 145
           ++  L   D      S    +  L   +  + + L    L+          L     L  
Sbjct: 3   DIQSL---DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 146 VLLSHNSLNGSIPRSLF-----LLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGN 200
           + L  N L       +          ++ L L N         + + +   L  L     
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

Query: 201 RLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIP 260
                    +      L        K      + S     P+                  
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 261 GEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSY 320
                 +  +  G  +       L +      S +   L  + +++       + +N   
Sbjct: 180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239

Query: 321 VDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTI 380
                     +        +   +         G +   +      + L L+ N L    
Sbjct: 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299

Query: 381 PACLIAQSETTLGVLNLGRNNLNGTLSDTI-----------FPRNCGLQILDLGGNQLQG 429
              L          L           +              F     +    L    ++ 
Sbjct: 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 359

Query: 430 VVPKSLANCNMLQVLDLKNNHISDNFPCWLGNA----SSLQVLVLQSNNFSGH-----IS 480
           +        ++L+VL L +  +SD+    L        SL+ L L +N          + 
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 481 CPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEE 515
             R      LL+ + L    +S    +  L  +E+
Sbjct: 420 SVRQPGC--LLEQLVLYDIYWSEE-MEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 8e-04
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 12/98 (12%)

Query: 190 SVLFDLDLSGNRLEGPVPISI---IFELRNLYTLDLSSNKFSR---LRLASSKPRVIPIL 243
           SVL  L L+   +      S+   +    +L  LDLS+N       L+L  S      + 
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES------VR 422

Query: 244 KNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLS 281
           +    L  L + +     E+ + +  +     +   +S
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 5e-10
 Identities = 51/287 (17%), Positives = 93/287 (32%), Gaps = 22/287 (7%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
           T    + GLQ   P  I      + + L  N++      +F    +L  L L     +  
Sbjct: 15  TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSM-ANLTQLFHMDFSSNHFSG-HIPSLHKSRNL 118
              +   L  L  +++        + P+    L +L  +                    L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 119 KYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFE 178
           +YL L  N L      TF +   NL  + L  N ++    R+   L +L+ L L  N+  
Sbjct: 132 QYLYLQDNALQALPDDTFRDL-GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 179 NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPR 238
           +  P        ++     + N     +P   +  LR L  L L+ N +           
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLS--ALPTEALAPLRALQYLRLNDNPWVCD-------- 240

Query: 239 VIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLL 285
                   + L     S++++P  +P  +        +   L+ N L
Sbjct: 241 -CRARPLWAWLQKFRGSSSEVPCSLPQRLA-----GRDLKRLAANDL 281

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 2/194 (1%)

Query: 7   CGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIG 66
             L+   P     +  L TL L    L +     F   ++L+ L L          D+  
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 67  NLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFN 126
           +L NLT + +     +     +   L  L  +    N  +   P   +          F 
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 127 NLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPE-IS 185
           N    + +     L  L  + L+ N       R+  L   L+    S+++    LP+ ++
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLA 269

Query: 186 NVSSSVLFDLDLSG 199
                 L   DL G
Sbjct: 270 GRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 3e-09
 Identities = 46/280 (16%), Positives = 84/280 (30%), Gaps = 31/280 (11%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
           Q + L  N +S    A    ++   L +L L  N L    +          Q+      Q
Sbjct: 35  QRIFLHGNRISHVPAASF--RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 427 LQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNV 486
           L+ V P +      L  L L    + +  P      ++LQ L LQ N             
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP--DDTFR 150

Query: 487 SWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTV 546
               L  + L  N+ S    + +                 L  L  ++            
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAF---------------RGLHSLDRLLLHQNRVA----- 190

Query: 547 TVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGN 606
               V     +      ++   +NN      E +   ++L  L ++ N       +    
Sbjct: 191 ---HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PL 246

Query: 607 LKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG 646
              ++    S + +   +P +LA      +  L+ N+L G
Sbjct: 247 WAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 9e-09
 Identities = 41/181 (22%), Positives = 68/181 (37%), Gaps = 8/181 (4%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
           TL L  CGLQ   P     +  L+ L L +N L       F    +L +L L G   S  
Sbjct: 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSG-HIPSLHKSRNLK 119
              +   L +L  + + +       P +  +L +L  +   +N+ S     +L   R L+
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228

Query: 120 YLDLSFNNLSGGISST-FWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFE 178
           YL L+ N       +   W  L        S + +  S+P+ L      +   L+ N  +
Sbjct: 229 YLRLNDNPWVCDCRARPLWAWLQKFR---GSSSEVPCSLPQRLA---GRDLKRLAANDLQ 282

Query: 179 N 179
            
Sbjct: 283 G 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 8e-07
 Identities = 40/235 (17%), Positives = 64/235 (27%), Gaps = 24/235 (10%)

Query: 300 LDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPES 359
                  L+     +   +  +    N  + +PA            +  +N L  +   +
Sbjct: 16  TSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 360 VCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQI 419
                  + LDLS+N    ++           L  L+L R      L   +F     LQ 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGL-GRLHTLHLDRCG-LQELGPGLFRGLAALQY 133

Query: 420 LDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSG-- 477
           L L  N LQ +   +  +   L  L L  N IS           SL  L+L  N  +   
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193

Query: 478 --------------------HISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLT 512
                                            LQ + L  N +      + L  
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 45/282 (15%), Positives = 78/282 (27%), Gaps = 37/282 (13%)

Query: 148 LSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVP 207
           L  N ++     S     NL  LWL +N             + +         +L    P
Sbjct: 39  LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98

Query: 208 ISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWI 267
                 L  L+TL L       L           + +  + L  L + +N +     +  
Sbjct: 99  A-TFHGLGRLHTLHLDRCGLQELG--------PGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 268 WEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNH 327
                GNL  L L  N + S+ E                          +   +    N 
Sbjct: 150 R--DLGNLTHLFLHGNRISSVPE-------------------RAFRGLHSLDRLLLHQNR 188

Query: 328 FTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQ 387
              +       +      +   N+L  +  E++      Q L L++N       A  +  
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248

Query: 388 SETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQG 429
               L       + +  +L   +     G  +  L  N LQG
Sbjct: 249 W---LQKFRGSSSEVPCSLPQRL----AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 38/206 (18%), Positives = 65/206 (31%)

Query: 441 LQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNK 500
            Q + L  N IS           +L +L L SN  +   +     ++      +   +  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 501 FSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPN 560
            S   +    L     +  +     EL    +   +   Y       ++ +     +   
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 561 IFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNL 620
             T +    N              SL  L +  N +    P +F +L ++ +L L  NNL
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 621 SGKIPAQLASLNFLSVLNLSYNNLVG 646
           S      LA L  L  L L+ N  V 
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVC 239

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 3e-09
 Identities = 31/208 (14%), Positives = 58/208 (27%), Gaps = 8/208 (3%)

Query: 413 RNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQS 472
           +      ++     L   +P  L       +L L  N +       L   + L  L L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 473 NNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRY 532
              +            P+L  +DL+ N+          L    ++       + L     
Sbjct: 65  AELTKLQVDGT----LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 533 VISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMS 592
                          +K +   LL        +  ++NN        +   ++L  L + 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 593 HNALTGSIPSSFGNLKQIESLDLSMNNL 620
            N+L  +IP  F     +    L  N  
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 40/202 (19%), Positives = 58/202 (28%), Gaps = 8/202 (3%)

Query: 1   TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
            ++  +  L    P  +        L LSEN L   SL      + L  L L       T
Sbjct: 14  EVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR--AELT 68

Query: 61  LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
                G L  L  +++                         +   S  + +L     L+ 
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128

Query: 121 LDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQ 180
           L L  N L   +          L  + L++N+L       L  L NL+TL L  N     
Sbjct: 129 LYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187

Query: 181 LPEISNVSSSVLFDLDLSGNRL 202
                      L    L GN  
Sbjct: 188 PKGFFGSHL--LPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 37/221 (16%), Positives = 70/221 (31%), Gaps = 17/221 (7%)

Query: 183 EISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPI 242
           E+S V+S    +++     L   +P  +    ++   L LS N      LA+        
Sbjct: 5   EVSKVAS--HLEVNCDKRNLTA-LPPDL---PKDTTILHLSENLLYTFSLAT-------- 50

Query: 243 LKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDL 302
           L   ++L+ L++   ++     +    V        N   +L +  Q   +++ + +   
Sbjct: 51  LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110

Query: 303 HSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCK 362
               L             +    N    +P  +     + E    ANN+L  +    +  
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170

Query: 363 GIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLN 403
                 L L  N+L  TIP          L    L  N   
Sbjct: 171 LENLDTLLLQENSLY-TIPKGFF--GSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 24/208 (11%)

Query: 321 VDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTI 380
           V+    + T +P D+     +T     + N L      ++        L+L    L+   
Sbjct: 15  VNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71

Query: 381 PACLIAQSETTLGVLNLGRNNLN------------------GTLSDTIFPRNCGLQILDL 422
               +    T     N  ++                      +L          LQ L L
Sbjct: 72  VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131

Query: 423 GGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCP 482
            GN+L+ + P  L     L+ L L NN++++     L    +L  L+LQ N+     + P
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL---YTIP 188

Query: 483 RNNVSWPLLQIVDLASNKFSGRLSQKWL 510
           +      LL    L  N +       + 
Sbjct: 189 KGFFGSHLLPFAFLHGNPWLCNCEILYF 216

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 579 EMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLN 638
           E+ +  S   +N     LT ++P      K    L LS N L     A L     L+ LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 639 LSYNN 643
           L    
Sbjct: 62  LDRAE 66

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 52/317 (16%), Positives = 94/317 (29%), Gaps = 11/317 (3%)

Query: 23  LETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFT 82
              L+L+   L   SLP  P +  L +L+ S    +  LP+   +L++L          +
Sbjct: 40  AHELELNNLGL--SSLPELPPH--LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 94

Query: 83  GPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLK-YLDLSFNNLSGGISSTFWEQLV 141
              P           ++      +     +    N               I++   +   
Sbjct: 95  DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154

Query: 142 NLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNR 201
              L  L   +   +   SL  LP+L     S     N L E+  + +        + N 
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214

Query: 202 LEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPG 261
           L   +P             +  ++     +  +       I    S+L       N    
Sbjct: 215 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 274

Query: 262 EIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYV 321
           EI +        +L  LN+S+N L+ L  P     +  L    N L   +P +  N   +
Sbjct: 275 EIRSLCDL--PPSLEELNVSNNKLIEL--PALPPRLERLIASFNHL-AEVPELPQNLKQL 329

Query: 322 DYSNNHFTFIPADIGNF 338
               N     P    + 
Sbjct: 330 HVEYNPLREFPDIPESV 346

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 54/310 (17%), Positives = 97/310 (31%), Gaps = 16/310 (5%)

Query: 2   LDLSECGLQGKFPEKILQVPTLETLDLSENQL--LQGSLPNFPKNSSLRNLILSGTGFSG 59
           L+L+  GL    PE     P LE+L  S N L  L     +        N + + +    
Sbjct: 43  LELNNLGLS-SLPELP---PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP 98

Query: 60  TLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLK 119
            L     +   L  +   + +    I     N  +       S  F     +  +     
Sbjct: 99  LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPEL 158

Query: 120 YLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFEN 179
                   +    +S      + L+L  +   +        L  LP L T++  NN  + 
Sbjct: 159 QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT 218

Query: 180 QLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRV 239
                 ++ +  + D  L+           +         L         L  +S++ R 
Sbjct: 219 LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS 278

Query: 240 IPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRL 299
           +        L  L++SNN++  E+P          L  L  S N L  +  P    +++ 
Sbjct: 279 LCD--LPPSLEELNVSNNKL-IELPALP-----PRLERLIASFNHLAEV--PELPQNLKQ 328

Query: 300 LDLHSNQLRG 309
           L +  N LR 
Sbjct: 329 LHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 46/285 (16%), Positives = 84/285 (29%), Gaps = 16/285 (5%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
           + L  S N+L+  +P    +     +   NL   +    L + +   N  L+ L    N 
Sbjct: 61  ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNS 119

Query: 427 LQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNV 486
               +     N          +          L     LQ L   +  ++ + S  +   
Sbjct: 120 SFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD 179

Query: 487 SWPLLQIVDLASNKFSGRLS-------QKWLLTMEEMMVAETKSGSELKHLRYVISSNQF 539
               L+ +   +N                       +        S              
Sbjct: 180 LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDL 239

Query: 540 YEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGS 599
            E+  ++T   V   +    +      +  N     I        SL  LN+S+N L   
Sbjct: 240 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-E 298

Query: 600 IPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
           +P+    L   E L  S N+L+ ++P    +   L  L++ YN L
Sbjct: 299 LPALPPRL---ERLIASFNHLA-EVPELPQN---LKQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 3e-05
 Identities = 61/331 (18%), Positives = 109/331 (32%), Gaps = 23/331 (6%)

Query: 116 RNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLL--PNLETLWLS 173
           R    L+L+   LS     +  E   +L  ++ S NSL   +P     L    ++   L 
Sbjct: 38  RQAHELELNNLGLS-----SLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 174 NNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLA 233
                  L E   VS++ L  L    N     +       L+ L  L  S    +     
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 234 SSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYS 293
             +   +  L   + +   + S  ++P    +    V   N+         L  L   Y+
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 294 ISSIR--LLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNS 351
            +++   L DL  +    N+             +  F  +  +I + +SE        N+
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 352 LVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIF 411
               I          + L++SNN L   +PA         L  L    N+L       + 
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP-----PRLERLIASFNHLA-----EVP 320

Query: 412 PRNCGLQILDLGGNQLQGV--VPKSLANCNM 440
                L+ L +  N L+    +P+S+ +  M
Sbjct: 321 ELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 20/94 (21%)

Query: 211 IFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEV 270
                +L  L++S+NK   L      P + P L+       L  S N +  E+P      
Sbjct: 280 CDLPPSLEELNVSNNKLIEL------PALPPRLER------LIASFNHL-AEVPELP--- 323

Query: 271 GNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHS 304
              NL  L++ +N L     P    S+  L ++S
Sbjct: 324 --QNLKQLHVEYNPLREF--PDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 50/344 (14%), Positives = 94/344 (27%), Gaps = 28/344 (8%)

Query: 295 SSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVG 354
                L+L++  L  ++P +  +   +  S N  T +P    +  S          +L  
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLESLVASCNSLTELPELPQSLKSLL-VDNNNLKALSD 95

Query: 355 VIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRN 414
           + P     G+    L+      + +    +   + +   + +L  +       +      
Sbjct: 96  LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL 155

Query: 415 CGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNN 474
             LQ L                    L +  +   +        L N   L  +   +N 
Sbjct: 156 PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 215

Query: 475 FSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVI 534
                  P +  +      V          L Q          +    S           
Sbjct: 216 LKTLPDLPPSLEALN----VRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 535 SSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHN 594
           SSN+                L  +P     ++ S+N     +P    R + L     S N
Sbjct: 272 SSNEIR-------------SLCDLPPSLEELNVSNNKLIE-LPALPPRLERL---IASFN 314

Query: 595 ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLN 638
            L   +P    NLK    L +  N L  + P    S+  L + +
Sbjct: 315 HLA-EVPELPQNLK---QLHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 52/322 (16%), Positives = 102/322 (31%), Gaps = 17/322 (5%)

Query: 148 LSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVP 207
           L++  L+ S+P    L P+LE+L  S N          ++ S ++ + +L       P+ 
Sbjct: 45  LNNLGLS-SLPE---LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLL 100

Query: 208 ISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSG--LDISNNQIPGEIPN 265
             +      L  L    N      +      +  +      L       +  +   E+ N
Sbjct: 101 EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQN 160

Query: 266 WIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSN 325
             +       N        L    E     +  L +L   Q    +  +  + + +    
Sbjct: 161 LPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP 220

Query: 326 NHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLI 385
           +    + A        T+      +     + E++  G+     +L   N S      L 
Sbjct: 221 DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC 280

Query: 386 AQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLD 445
                +L  LN+  N L       +      L+ L    N L   VP+   N   L+ L 
Sbjct: 281 DLP-PSLEELNVSNNKLI-----ELPALPPRLERLIASFNHLAE-VPELPQN---LKQLH 330

Query: 446 LKNNHISDNFPCWLGNASSLQV 467
           ++ N + + FP    +   L++
Sbjct: 331 VEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 8e-04
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 4   LSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPD 63
                   +        P+LE L++S N+L+   LP  P    L  LI S    +  +P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI--ELPALPPR--LERLIASFNHLA-EVPE 321

Query: 64  SIGNLENLTWVEVRRCNFTGPIPPSMANLTQL 95
              NL+ L    V         P    ++  L
Sbjct: 322 LPQNLKQL---HVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 45/291 (15%), Positives = 84/291 (28%), Gaps = 28/291 (9%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
             L+L+N  LS ++P          L  L    N+L       +      L+ L +  N 
Sbjct: 41  HELELNNLGLS-SLPELP-----PHLESLVASCNSLT-----ELPELPQSLKSLLVDNNN 89

Query: 427 LQGV--VPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRN 484
           L+ +  +P  L    +      K   + ++    + +  +  +  L     S       N
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 485 NVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSEL-----------KHLRYV 533
           N    L ++ +L         +       +  +  E+                   L  +
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 534 ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSH 593
            + N   +    +        +             S  F             L       
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 594 NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
           NA +  I S       +E L++S N L  ++PA       L  L  S+N+L
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL 316

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 42/313 (13%), Positives = 90/313 (28%), Gaps = 21/313 (6%)

Query: 195 LDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQ----SQLS 250
           L+L+   L      S+     +L +L  S N  + L       + + +  N     S L 
Sbjct: 43  LELNNLGLS-----SLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP 97

Query: 251 GLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGN 310
            L         ++        +  L  +++ +N L  L +            +  +    
Sbjct: 98  PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE 157

Query: 311 IPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLD 370
           + ++   T+    +N+        +                 +  +P      IY     
Sbjct: 158 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF--LTTIYADNNL 215

Query: 371 LSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGV 430
           L            L  +      +  L ++     +S+ IF     L       N     
Sbjct: 216 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 275

Query: 431 VPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPL 490
           +         L+ L++ NN + +  P        L+ L+   N+ +     P+N      
Sbjct: 276 IRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHLAEVPELPQN------ 325

Query: 491 LQIVDLASNKFSG 503
           L+ + +  N    
Sbjct: 326 LKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 46/328 (14%), Positives = 90/328 (27%), Gaps = 24/328 (7%)

Query: 163 LLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDL 222
           L      L L+N    +      ++ S     L  S N L       +    ++L +L +
Sbjct: 36  LDRQAHELELNNLGLSSLPELPPHLES-----LVASCNSLT-----ELPELPQSLKSLLV 85

Query: 223 SSNKFSRLR-LASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLS 281
            +N    L  L      +        +L  L  S+     ++ N   +        L   
Sbjct: 86  DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

Query: 282 HNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSE 341
                 L+E   + ++  L                  S       +           +  
Sbjct: 146 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 205

Query: 342 TEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGT-----IPACLIAQSETTLGVLN 396
               +A NN L  +              +   +          +       S  +    N
Sbjct: 206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 265

Query: 397 LGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFP 456
           L   N +     ++      L+ L++  N+L  + P        L+ L    NH+++  P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-PALPPR---LERLIASFNHLAE-VP 320

Query: 457 CWLGNASSLQVLVLQSNNFSGHISCPRN 484
               N   L+ L ++ N        P +
Sbjct: 321 ELPQN---LKQLHVEYNPLREFPDIPES 345

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (111), Expect = 4e-07
 Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 9/131 (6%)

Query: 119 KYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFE 178
           + L L+  +L+        EQL+ +  + LSHN L    P     L  L  L +      
Sbjct: 1   RVLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDN 53

Query: 179 NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPR 238
                    +   L +L L  NRL+    I  +     L  L+L  N     +    + R
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC--QEEGIQER 111

Query: 239 VIPILKNQSQL 249
           +  +L + S +
Sbjct: 112 LAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 7e-07
 Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 4/106 (3%)

Query: 85  IPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLN 144
           +   +  L  + H+D S N      P+L   R L+ L  S N L          +L  L 
Sbjct: 12  VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELL 71

Query: 145 LVLLSHNSLNG-SIPRSLFLLPNLETLWLSNNQFENQLPEISNVSS 189
              L +N L   +  + L   P L  L L  N    +      ++ 
Sbjct: 72  ---LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 7e-06
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 25  TLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGP 84
            L L+   L    L +  +   + +L LS        P ++  L  L  ++         
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNAL--E 56

Query: 85  IPPSMANLTQLFHMDFSSNHFSG--HIPSLHKSRNLKYLDLSFNNLSG 130
               +ANL +L  +   +N       I  L     L  L+L  N+L  
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 3e-05
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 1/102 (0%)

Query: 278 LNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGN 337
           L+L+H  L  L     +  +  LDL  N+LR   P ++          +       D   
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 338 FMSETEYFFAANNSLVGV-IPESVCKGIYFQVLDLSNNNLSG 378
            +   +     NN L      + +       +L+L  N+L  
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ 426
           +VL L++ +L  T+   L  +    +  L+L  N L              L++L    + 
Sbjct: 1   RVLHLAHKDL--TVLCHL--EQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQ--ASD 52

Query: 427 LQGVVPKSLANCNMLQVLDLKNNHISD-NFPCWLGNASSLQVLVLQSNNFSG 477
                   +AN   LQ L L NN +        L +   L +L LQ N+   
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 1e-06
 Identities = 29/224 (12%), Positives = 70/224 (31%), Gaps = 19/224 (8%)

Query: 417 LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS 476
              +  G + +   V  + A+ + +  L      ++      +   ++L  L L  +N  
Sbjct: 21  AIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLEL-KDNQI 75

Query: 477 GHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISS 536
             ++  +N      L++        S     + + T++      T            +  
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 537 NQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNAL 596
               ++          T +  +  +      S  N +      +     L  L    N +
Sbjct: 136 LDLNQI----------TNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185

Query: 597 TGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLS 640
           +   P    +L  +  + L  N +S   P  LA+ + L ++ L+
Sbjct: 186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 32/227 (14%), Positives = 66/227 (29%), Gaps = 18/227 (7%)

Query: 244 KNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLH 303
              +    +    + +   +     +     +  L+     + +++    ++++  L+L 
Sbjct: 16  PALANAIKIAAGKSNVTDTVT----QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELK 71

Query: 304 SNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKG 363
            NQ+    P  +         + +     + I    S       +               
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ----------ITD 121

Query: 364 IYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLG 423
           +       +   L   +           L  L             T       L  L   
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 424 GNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL 470
            N++  + P  LA+   L  + LKNN ISD  P  L N S+L ++ L
Sbjct: 182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 28/194 (14%), Positives = 53/194 (27%), Gaps = 21/194 (10%)

Query: 19  QVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRR 78
            +  + TL      +   ++      ++L  L L     +   P           +    
Sbjct: 39  DLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNP 96

Query: 79  CNFTGPIPPSMA-----------NLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNN 127
                 I    +                     +       +  +     L  L      
Sbjct: 97  LKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL 156

Query: 128 LSGGISSTFWEQL---VNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEI 184
             G    +    L     L  +    N ++   P  L  LPNL  + L NNQ  + +  +
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD-VSPL 213

Query: 185 SNVSSSVLFDLDLS 198
           +N S+  LF + L+
Sbjct: 214 ANTSN--LFIVTLT 225

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 26/240 (10%), Positives = 60/240 (25%), Gaps = 9/240 (3%)

Query: 414 NCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSN 473
           +C  ++     +++   +P  L        L      +             L+ + +  N
Sbjct: 7   HCSNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63

Query: 474 NFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKS---GSELKHL 530
           +    I     +    L +I    +N       + +        +  + +        H 
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 531 RYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALN 590
            + +                     + +      +  + N  +          +      
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL 183

Query: 591 MSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT 650
             +N L       F        LD+S   +       L +L  L   +    NL  K+PT
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNL-KKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 7e-04
 Identities = 24/235 (10%), Positives = 54/235 (22%), Gaps = 15/235 (6%)

Query: 219 TLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFL 278
                 +K + +      P  +P          L     ++           G+     +
Sbjct: 12  VFLCQESKVTEI------PSDLP-----RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 60

Query: 279 NLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNF 338
           + +  L V   + +S                   +     +  +      +         
Sbjct: 61  SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 120

Query: 339 MSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLG 398
           + +          +   I     +   F  L   +  L           +    G     
Sbjct: 121 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDE 180

Query: 399 RNNLN----GTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNN 449
            N  +      L + +F    G  ILD+   ++  +    L N   L+     N 
Sbjct: 181 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 2e-06
 Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 23  LETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLP-DSIGNLENLTWVEVRRCNF 81
              L  + +  L  SL + P   +L  L +        L    +  L  L  + + +   
Sbjct: 10  SSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 82  TGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLV 141
               P +     +L  ++ S N          +  +L+ L LS N L    +  + ++  
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWE 128

Query: 142 NLNLVLLSHNSLNGSIPRSLFLLPNL 167
              L  +    L       L  +PN 
Sbjct: 129 EEGLGGVPEQKLQCHGQGPLAHMPNA 154

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.7 bits (101), Expect = 5e-05
 Identities = 37/320 (11%), Positives = 82/320 (25%), Gaps = 20/320 (6%)

Query: 142 NLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEI---SNVSSSVLFDLDLS 198
           +L L  ++      S+   L    +++ + LS N    +       +  S   L   + S
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 199 GNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQ 258
                       + +        L        +L + +           +     +S + 
Sbjct: 68  DIF------TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 121

Query: 259 IPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNT 318
               +      +G      +  +   L   ++  +   +R +    N+L        +  
Sbjct: 122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-----ENGSMK 176

Query: 319 SYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSG 378
            +     +H       +       E         +    E     +         ++   
Sbjct: 177 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 236

Query: 379 TIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLA-- 436
                     E  L    L        +       N GLQ L L  N+++    ++L   
Sbjct: 237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 296

Query: 437 ---NCNMLQVLDLKNNHISD 453
                  L  L+L  N  S+
Sbjct: 297 IDEKMPDLLFLELNGNRFSE 316

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.3 bits (100), Expect = 5e-05
 Identities = 41/338 (12%), Positives = 85/338 (25%), Gaps = 46/338 (13%)

Query: 99  DFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIP 158
             ++         L +  ++K + LS N +    +                       + 
Sbjct: 14  AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAAR---------------------WLS 52

Query: 159 RSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLY 218
            ++    +LE    S+        EI      +L                  + +   L+
Sbjct: 53  ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL----------------QALLKCPKLH 96

Query: 219 TLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFL 278
           T+ LS N F           +      +      +    Q   +I   + E+        
Sbjct: 97  TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKN 156

Query: 279 NLSHNLLVSLQEPYSISSIRLLDLHSNQLRG-NIPHMSTNTSYVDYSNNHFTFIPADIGN 337
                 ++  +      S++         R  +   M  N    +   +      A    
Sbjct: 157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 216

Query: 338 FMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGT----IPACLIAQSETTLG 393
                       +     +  ++      + L L++  LS      +           L 
Sbjct: 217 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ 276

Query: 394 VLNLGRNNLNG----TLSDTIFPRNCGLQILDLGGNQL 427
            L L  N +      TL   I  +   L  L+L GN+ 
Sbjct: 277 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 37/293 (12%), Positives = 69/293 (23%), Gaps = 25/293 (8%)

Query: 208 ISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWI 267
            +++ E  ++  + LS N       A      I   K+       DI   ++  EIP  +
Sbjct: 24  FAVLLEDDSVKEIVLSGNTIG-TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 268 WEVGNGNLNFLNLS--HNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSN 325
             +    L    L        +         I  L  H+      + +            
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142

Query: 326 NHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLI 385
                +  +     +          + +           +     L    +         
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202

Query: 386 AQSETTLGVLNLGR-----------NNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKS 434
            +     G+                 +L  +           L+ L L    L      +
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262

Query: 435 LANCNM------LQVLDLKNNHISDNFPCWLGNA-----SSLQVLVLQSNNFS 476
           + +         LQ L L+ N I  +    L          L  L L  N FS
Sbjct: 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 32/181 (17%), Positives = 68/181 (37%), Gaps = 15/181 (8%)

Query: 19  QVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRR 78
           ++ +++ +  + + +   S+       ++  L L+G   +      I  L NL  +    
Sbjct: 44  ELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLNGNKLTD-----IKPLANLKNLGWLF 96

Query: 79  CNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWE 138
            +       S     +        ++    I  L     L+ L L  N ++     T   
Sbjct: 97  LDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD---ITVLS 153

Query: 139 QLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLS 198
           +L  L+ + L  N ++  +P  L  L  L+ L+LS N   + L  ++ + +  L  L+L 
Sbjct: 154 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKN--LDVLELF 208

Query: 199 G 199
            
Sbjct: 209 S 209

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 21/139 (15%), Positives = 46/139 (33%), Gaps = 5/139 (3%)

Query: 87  PSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLV 146
               N  +   +D                     +D S N +        +  L  L  +
Sbjct: 12  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI---RKLDGFPLLRRLKTL 68

Query: 147 LLSHNSLNGSIPRSLFLLPNLETLWLSNNQFEN--QLPEISNVSSSVLFDLDLSGNRLEG 204
           L+++N +          LP+L  L L+NN       L  ++++ S     +  +    + 
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 205 PVPISIIFELRNLYTLDLS 223
              + +I+++  +  LD  
Sbjct: 129 HYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 602 SSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644
           + + N  +   LDL    +   I    A+L+    ++ S N +
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI 53

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 36/152 (23%), Positives = 50/152 (32%), Gaps = 16/152 (10%)

Query: 172 LSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLR 231
           L   Q E     +S         LDL G R         +        L+  S+  + LR
Sbjct: 4   LKPEQVEQLKLIMSKRYDGSQQALDLKGLRS-----DPDLVAQNIDVVLNRRSSMAATLR 58

Query: 232 LASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQE- 290
           +            N  +L  L++SNN++              NL  LNLS N L S +E 
Sbjct: 59  IIEE---------NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL 109

Query: 291 -PYSISSIRLLDLHSNQLRGNIPHMSTNTSYV 321
                  +  L L  N L       ST  S +
Sbjct: 110 DKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	650
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.36
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.32
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.25
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.92
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.8
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.52
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.4

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=3.8e-25  Score=222.62  Aligned_cols=186  Identities=26%  Similarity=0.289  Sum_probs=142.6

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL  470 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  470 (650)
                      +++.+++++|.+.+..+   +..+++|++|++++|.+++.  ..+..+++|+.|++++|++.+..  .+..+++|++|++
T Consensus       198 ~~~~l~l~~n~i~~~~~---~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l  270 (384)
T d2omza2         198 NLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKL  270 (384)
T ss_dssp             TCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEEC
T ss_pred             ccceeeccCCccCCCCc---ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeec
Confidence            67777777777664332   34566788888888877643  35677888888888888887743  3677888888888


Q ss_pred             cCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeecc
Q 043523          471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKG  550 (650)
Q Consensus       471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  550 (650)
                      ++|+++..    ..+..++.++.+++++|.+.+..                                             
T Consensus       271 ~~~~l~~~----~~~~~~~~l~~l~~~~n~l~~~~---------------------------------------------  301 (384)
T d2omza2         271 GANQISNI----SPLAGLTALTNLELNENQLEDIS---------------------------------------------  301 (384)
T ss_dssp             CSSCCCCC----GGGTTCTTCSEEECCSSCCSCCG---------------------------------------------
T ss_pred             cCcccCCC----Ccccccccccccccccccccccc---------------------------------------------
Confidence            88887643    24667778888888888765311                                             


Q ss_pred             chhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccC
Q 043523          551 VETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS  630 (650)
Q Consensus       551 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~  630 (650)
                          ....++.++.|++++|.+.++.  .+..+++|++|++++|++++ ++ +++++++|++|++++|++++.+|  +++
T Consensus       302 ----~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~  371 (384)
T d2omza2         302 ----PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LAN  371 (384)
T ss_dssp             ----GGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTT
T ss_pred             ----ccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hcc
Confidence                1135778889999999998654  48889999999999999994 33 68999999999999999998765  899


Q ss_pred             CCCCCeEEccCC
Q 043523          631 LNFLSVLNLSYN  642 (650)
Q Consensus       631 l~~L~~L~l~~n  642 (650)
                      +++|+.|+|++|
T Consensus       372 l~~L~~L~L~~N  383 (384)
T d2omza2         372 LTRITQLGLNDQ  383 (384)
T ss_dssp             CTTCSEEECCCE
T ss_pred             CCCCCEeeCCCC
Confidence            999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=2e-23  Score=209.92  Aligned_cols=356  Identities=25%  Similarity=0.263  Sum_probs=183.3

Q ss_pred             EccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcc
Q 043523           51 ILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSG  130 (650)
Q Consensus        51 ~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~  130 (650)
                      .++.+.+++.+.  ...+.+|++|++++++|+. + ..++.+++|++|++++|++++.+ .+..+++|++|++++|.+.+
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l~-~l~~L~~L~~L~L~~n~i~~  102 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIAD  102 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCCc-cccCCccccccccccccccc
Confidence            444455543322  3456788888888888873 3 45778888888888888887654 47778888888888888763


Q ss_pred             cCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhH
Q 043523          131 GISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISI  210 (650)
Q Consensus       131 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  210 (650)
                      . ..  ++++++|+.++++++.+.+..  .......+.......+.+...... ..................      ..
T Consensus       103 i-~~--l~~l~~L~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~------~~  170 (384)
T d2omza2         103 I-TP--LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISAL-SGLTSLQQLSFGNQVTDL------KP  170 (384)
T ss_dssp             C-GG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGG-TTCTTCSEEEEEESCCCC------GG
T ss_pred             c-cc--ccccccccccccccccccccc--cccccccccccccccccccccccc-cccccccccccccccchh------hh
Confidence            2 22  677788888888777776443  233445555555555544321111 111111111111111100      01


Q ss_pred             hhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcC
Q 043523          211 IFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQE  290 (650)
Q Consensus       211 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~  290 (650)
                      +...+.........+...          .......+++++.++++++.+.+..|.    ...++|++|++++|.++.++.
T Consensus       171 ~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~l~l~~n~i~~~~~~----~~~~~L~~L~l~~n~l~~~~~  236 (384)
T d2omza2         171 LANLTTLERLDISSNKVS----------DISVLAKLTNLESLIATNNQISDITPL----GILTNLDELSLNGNQLKDIGT  236 (384)
T ss_dssp             GTTCTTCCEEECCSSCCC----------CCGGGGGCTTCSEEECCSSCCCCCGGG----GGCTTCCEEECCSSCCCCCGG
T ss_pred             hccccccccccccccccc----------cccccccccccceeeccCCccCCCCcc----cccCCCCEEECCCCCCCCcch
Confidence            122222222332222211          111133444555555555554432221    111234444444444444433


Q ss_pred             cccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEE
Q 043523          291 PYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLD  370 (650)
Q Consensus       291 ~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~  370 (650)
                      ...+++                                             ++.+++++|.+.+..  .+..+++|+.++
T Consensus       237 l~~l~~---------------------------------------------L~~L~l~~n~l~~~~--~~~~~~~L~~L~  269 (384)
T d2omza2         237 LASLTN---------------------------------------------LTDLDLANNQISNLA--PLSGLTKLTELK  269 (384)
T ss_dssp             GGGCTT---------------------------------------------CSEEECCSSCCCCCG--GGTTCTTCSEEE
T ss_pred             hhcccc---------------------------------------------cchhccccCccCCCC--cccccccCCEee
Confidence            333333                                             333333333333221  233444555555


Q ss_pred             CcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCc
Q 043523          371 LSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNH  450 (650)
Q Consensus       371 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~  450 (650)
                      ++++.+.+..+  +.  ..+.++.+++++|.+.+ +.  .+..++++++|++++|++++..  .+..+++|++|++++|+
T Consensus       270 l~~~~l~~~~~--~~--~~~~l~~l~~~~n~l~~-~~--~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         270 LGANQISNISP--LA--GLTALTNLELNENQLED-IS--PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             CCSSCCCCCGG--GT--TCTTCSEEECCSSCCSC-CG--GGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSC
T ss_pred             ccCcccCCCCc--cc--ccccccccccccccccc-cc--ccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCC
Confidence            55554442111  11  12255566666655542 21  1555666677777777666432  25666777777777777


Q ss_pred             cccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCc
Q 043523          451 ISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASN  499 (650)
Q Consensus       451 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n  499 (650)
                      ++++ + .+.++++|++|++++|++++..    .+.++++|++|++++|
T Consensus       341 l~~l-~-~l~~l~~L~~L~l~~N~l~~l~----~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         341 VSDV-S-SLANLTNINWLSAGHNQISDLT----PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCCC-G-GGGGCTTCCEEECCSSCCCBCG----GGTTCTTCSEEECCCE
T ss_pred             CCCC-h-hHcCCCCCCEEECCCCcCCCCh----hhccCCCCCEeeCCCC
Confidence            6652 2 4666777777777777666432    2556677777777665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=3.7e-25  Score=215.20  Aligned_cols=254  Identities=28%  Similarity=0.431  Sum_probs=176.0

Q ss_pred             CccEEEccCCcccc--cccccccCCCcccEEECcC-ccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCc
Q 043523          341 ETEYFFAANNSLVG--VIPESVCKGIYFQVLDLSN-NNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGL  417 (650)
Q Consensus       341 ~l~~l~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L  417 (650)
                      .++.++++++.+.+  .+|..++.+++|++|++++ |.+.+.+|..+....  +|++|++++|++.+..+ ..+..+.+|
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~--~L~~L~Ls~N~l~~~~~-~~~~~~~~L  127 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT--QLHYLYITHTNVSGAIP-DFLSQIKTL  127 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT--TCSEEEEEEECCEEECC-GGGGGCTTC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccccc--ccchhhhcccccccccc-ccccchhhh
Confidence            34555555555554  3556666777777777765 566666666655543  67777777776663333 336667777


Q ss_pred             cEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCC-CeEEccCcccceecCCCCCCCCCCCCCeeeC
Q 043523          418 QILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSL-QVLVLQSNNFSGHISCPRNNVSWPLLQIVDL  496 (650)
Q Consensus       418 ~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L-~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l  496 (650)
                      +.+++++|.+....|..+..++.++++++++|.+.+..|..+..+..+ +.+.+++|+++...  +..+..+. ...+++
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~--~~~~~~l~-~~~l~l  204 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI--PPTFANLN-LAFVDL  204 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC--CGGGGGCC-CSEEEC
T ss_pred             cccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccc--cccccccc-cccccc
Confidence            777777777776777777777777777777777776667666666665 67777777776554  44444433 335677


Q ss_pred             CCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCC
Q 043523          497 ASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPI  576 (650)
Q Consensus       497 ~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~  576 (650)
                      +++...+..+.                                               .....+.++.++++++.+.+..
T Consensus       205 ~~~~~~~~~~~-----------------------------------------------~~~~~~~l~~l~~~~~~l~~~~  237 (313)
T d1ogqa_         205 SRNMLEGDASV-----------------------------------------------LFGSDKNTQKIHLAKNSLAFDL  237 (313)
T ss_dssp             CSSEEEECCGG-----------------------------------------------GCCTTSCCSEEECCSSEECCBG
T ss_pred             ccccccccccc-----------------------------------------------cccccccccccccccccccccc
Confidence            66655433222                                               2245677888888888887554


Q ss_pred             CccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCc-Cccc-CC
Q 043523          577 PEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN-LVGK-IP  649 (650)
Q Consensus       577 ~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~-~p  649 (650)
                      + .+..+++|+.|++++|++++.+|++|+++++|++|++++|++++.+|+ +.++++|+.+++++|+ +.|. +|
T Consensus       238 ~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp  310 (313)
T d1ogqa_         238 G-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             G-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSS
T ss_pred             c-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCC
Confidence            4 577788999999999999988899999999999999999999877774 5788899999999997 4443 55

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=2.1e-24  Score=209.88  Aligned_cols=233  Identities=29%  Similarity=0.464  Sum_probs=199.3

Q ss_pred             CcccEEECcCccccc--cCChhhhhccccCccEEEccC-ccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCC
Q 043523          364 IYFQVLDLSNNNLSG--TIPACLIAQSETTLGVLNLGR-NNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNM  440 (650)
Q Consensus       364 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~  440 (650)
                      .+++.|+++++.+.+  .+|..+....  +|++|++++ |++.+.+|.. +.++++|++|++++|++.+..+..+..++.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~--~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLP--YLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCT--TCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCc--cccccccccccccccccccc-cccccccchhhhccccccccccccccchhh
Confidence            368899999998876  4677776654  999999987 6788788776 889999999999999999888888999999


Q ss_pred             CCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCC-CeeeCCCcccccccChHHHHhHHhhHhh
Q 043523          441 LQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLL-QIVDLASNKFSGRLSQKWLLTMEEMMVA  519 (650)
Q Consensus       441 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L-~~L~l~~n~~~~~~~~~~~~~l~~l~~~  519 (650)
                      |+++++++|.+....|..+.+++.|+++++++|.+....  +..+..+..+ +.+++++|.+++..+..+          
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~i--p~~~~~l~~l~~~l~~~~n~l~~~~~~~~----------  194 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTGKIPPTF----------  194 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGCCCTTCCEEECCSSEEEEECCGGG----------
T ss_pred             hcccccccccccccCchhhccCcccceeecccccccccc--ccccccccccccccccccccccccccccc----------
Confidence            999999999999888899999999999999999987654  6666666665 789999998875544322          


Q ss_pred             hcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCccc
Q 043523          520 ETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGS  599 (650)
Q Consensus       520 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~  599 (650)
                                                           ... ....+++.++...+..+..+..+++++.+++++|.+.+.
T Consensus       195 -------------------------------------~~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~  236 (313)
T d1ogqa_         195 -------------------------------------ANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             -------------------------------------GGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             -------------------------------------ccc-ccccccccccccccccccccccccccccccccccccccc
Confidence                                                 122 334689999999888898999999999999999999865


Q ss_pred             CCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCcccCCC
Q 043523          600 IPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT  650 (650)
Q Consensus       600 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~  650 (650)
                      . ..++.+++|++|++++|++++.+|+.|.++++|+.|++++|.++|++|+
T Consensus       237 ~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         237 L-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             G-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             c-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            4 4688899999999999999999999999999999999999999999996

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=9.5e-23  Score=197.32  Aligned_cols=270  Identities=21%  Similarity=0.209  Sum_probs=172.2

Q ss_pred             ccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEc
Q 043523          318 TSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNL  397 (650)
Q Consensus       318 L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  397 (650)
                      .+.++.++.+++.+|..+   ++.+++|++++|.+....+..+..+++|++|++++|.+....+..+....  .|++|++
T Consensus        12 ~~~~~C~~~~L~~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~--~L~~L~l   86 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV--KLERLYL   86 (305)
T ss_dssp             TTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT--TCCEEEC
T ss_pred             CCEEEecCCCCCccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCC--ccCEecc
Confidence            345555555566665544   34566666666666555445566666666666666666544444443332  6666666


Q ss_pred             cCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCcccc--ccchhhhcCCCCCeEEccCccc
Q 043523          398 GRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD--NFPCWLGNASSLQVLVLQSNNF  475 (650)
Q Consensus       398 ~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~L~~L~l~~n~~  475 (650)
                      ++|++. .++...   ...++.|++.+|.+.+..+..+.....++.++...|....  .....+..+++|+.+++++|.+
T Consensus        87 ~~n~l~-~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l  162 (305)
T d1xkua_          87 SKNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  162 (305)
T ss_dssp             CSSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             cCCccC-cCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc
Confidence            666655 444332   2356677777777765555666666677777777664433  2344566677777777777776


Q ss_pred             ceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhc
Q 043523          476 SGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETML  555 (650)
Q Consensus       476 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  555 (650)
                      ...   +.  ..+++|++|++++|......+.                                               .
T Consensus       163 ~~l---~~--~~~~~L~~L~l~~n~~~~~~~~-----------------------------------------------~  190 (305)
T d1xkua_         163 TTI---PQ--GLPPSLTELHLDGNKITKVDAA-----------------------------------------------S  190 (305)
T ss_dssp             CSC---CS--SCCTTCSEEECTTSCCCEECTG-----------------------------------------------G
T ss_pred             ccc---Cc--ccCCccCEEECCCCcCCCCChh-----------------------------------------------H
Confidence            532   11  1246777777777765432221                                               2


Q ss_pred             ccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCcc------cc
Q 043523          556 LKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ------LA  629 (650)
Q Consensus       556 ~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~------l~  629 (650)
                      +..++.+++|++++|.+.++.+..+..+++|++|+|++|+++ .+|++|..+++|++|++++|+|+.+....      +.
T Consensus       191 ~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~  269 (305)
T d1xkua_         191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT  269 (305)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCT
T ss_pred             hhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhc
Confidence            235567777888888887777778888888888888888888 55778888888888888888888664433      34


Q ss_pred             CCCCCCeEEccCCcCc-ccCC
Q 043523          630 SLNFLSVLNLSYNNLV-GKIP  649 (650)
Q Consensus       630 ~l~~L~~L~l~~n~~~-~~~p  649 (650)
                      .+++|+.|++++|++. .++|
T Consensus       270 ~~~~L~~L~L~~N~~~~~~~~  290 (305)
T d1xkua_         270 KKASYSGVSLFSNPVQYWEIQ  290 (305)
T ss_dssp             TSCCCSEEECCSSSSCGGGSC
T ss_pred             ccCCCCEEECCCCcCccCcCC
Confidence            5677888888888874 3443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=2.2e-22  Score=194.74  Aligned_cols=284  Identities=17%  Similarity=0.222  Sum_probs=224.7

Q ss_pred             cccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCcc
Q 043523          296 SIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNN  375 (650)
Q Consensus       296 ~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  375 (650)
                      ..++++.++..++......++++++|++++|+++.++...+..+++|++++++++.+....|..+..+++|+.|++++|+
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc
Confidence            34566666666666555556788999999999999988777778999999999999998888889999999999999998


Q ss_pred             ccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccc--cccchhcccCCCCCEEeCCCCcccc
Q 043523          376 LSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQ--GVVPKSLANCNMLQVLDLKNNHISD  453 (650)
Q Consensus       376 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~  453 (650)
                      +. .++....    ..++.|++.+|.+. .++...+.....+..++...+...  ...+..+..+++|+++++++|.+..
T Consensus        91 l~-~l~~~~~----~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~  164 (305)
T d1xkua_          91 LK-ELPEKMP----KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  164 (305)
T ss_dssp             CS-BCCSSCC----TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             cC-cCccchh----hhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence            87 4444322    37899999999887 566666888888999999888543  3345678889999999999999887


Q ss_pred             ccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceee
Q 043523          454 NFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV  533 (650)
Q Consensus       454 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~  533 (650)
                      + +..  .+++|++|++++|..+...  +..+.+++.+++|++++|.+....+                           
T Consensus       165 l-~~~--~~~~L~~L~l~~n~~~~~~--~~~~~~~~~l~~L~~s~n~l~~~~~---------------------------  212 (305)
T d1xkua_         165 I-PQG--LPPSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDN---------------------------  212 (305)
T ss_dssp             C-CSS--CCTTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECT---------------------------
T ss_pred             c-Ccc--cCCccCEEECCCCcCCCCC--hhHhhcccccccccccccccccccc---------------------------
Confidence            4 332  3789999999999988765  6778889999999999998764322                           


Q ss_pred             ccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCc------cCC
Q 043523          534 ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSF------GNL  607 (650)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~------~~l  607 (650)
                                          ..+..+++|++|+|++|+++.+ +..+..+++|++|+|++|+|+......|      ...
T Consensus       213 --------------------~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~  271 (305)
T d1xkua_         213 --------------------GSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK  271 (305)
T ss_dssp             --------------------TTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTS
T ss_pred             --------------------ccccccccceeeeccccccccc-ccccccccCCCEEECCCCccCccChhhccCcchhccc
Confidence                                1224678899999999999855 5688999999999999999996544444      457


Q ss_pred             CCCCeeeCCCCcCC--ccCCccccCCCCCCeEE
Q 043523          608 KQIESLDLSMNNLS--GKIPAQLASLNFLSVLN  638 (650)
Q Consensus       608 ~~L~~L~l~~n~i~--~~~~~~l~~l~~L~~L~  638 (650)
                      ++|+.|++++|.+.  .+.|.+|+.+.....+.
T Consensus       272 ~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~~~  304 (305)
T d1xkua_         272 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ  304 (305)
T ss_dssp             CCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred             CCCCEEECCCCcCccCcCCHhHhcccccCcccc
Confidence            88999999999886  46777888776655554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.1e-22  Score=192.41  Aligned_cols=223  Identities=22%  Similarity=0.217  Sum_probs=185.2

Q ss_pred             EECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCC-
Q 043523          369 LDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLK-  447 (650)
Q Consensus       369 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls-  447 (650)
                      ++.+++.++ .+|..+.    +.+++|++++|+++ .++...|..+++|++|++++|++....+..+..++.++.++.. 
T Consensus        16 v~c~~~~L~-~iP~~ip----~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP----AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             EECCSSCCS-SCCTTCC----TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEcCCCCCC-ccCCCCC----CCCCEEECcCCcCC-CCCHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            445555554 5554432    27889999999887 6777679999999999999999988888888888999998875 


Q ss_pred             CCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCccc
Q 043523          448 NNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSEL  527 (650)
Q Consensus       448 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~  527 (650)
                      .+.+..+.+..|.++++|++|++++|.+....  ...+...++|+.+++++|.++...+                     
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~l~l~~N~l~~i~~---------------------  146 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPD---------------------  146 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCT---------------------
T ss_pred             ccccccccchhhcccccCCEEecCCccccccc--ccccchhcccchhhhccccccccCh---------------------
Confidence            46677777888899999999999999886544  4566678889999999998763222                     


Q ss_pred             ccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCC
Q 043523          528 KHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNL  607 (650)
Q Consensus       528 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l  607 (650)
                                                ..+...+.++.|++++|.+..+.+.++..+++|+.+++++|++++..|.+|..+
T Consensus       147 --------------------------~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l  200 (284)
T d1ozna_         147 --------------------------DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL  200 (284)
T ss_dssp             --------------------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             --------------------------hHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhh
Confidence                                      123457788999999999998888999999999999999999999999999999


Q ss_pred             CCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCcc
Q 043523          608 KQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG  646 (650)
Q Consensus       608 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~  646 (650)
                      ++|++|++++|.+.+.++..|+.+++|+.|++++|++..
T Consensus       201 ~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            999999999999999999999999999999999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.7e-22  Score=191.61  Aligned_cols=256  Identities=18%  Similarity=0.166  Sum_probs=169.5

Q ss_pred             EEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccC
Q 043523          320 YVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGR  399 (650)
Q Consensus       320 ~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  399 (650)
                      .++.++.+++.+|..+   ++.+++|++++|++....+..+.++++|+.|+++++.+....+..+....  .++.+....
T Consensus        15 ~v~c~~~~L~~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~--~~~~l~~~~   89 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA--LLEQLDLSD   89 (284)
T ss_dssp             EEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT--TCCEEECCS
T ss_pred             EEEcCCCCCCccCCCC---CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccc--ccccccccc
Confidence            3455555666666554   34567777777777666666677777777777777777654444443332  666666655


Q ss_pred             ccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceec
Q 043523          400 NNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHI  479 (650)
Q Consensus       400 ~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~  479 (650)
                      +.....++...|..+++|++|++++|.+....+..+...++|+.+++++|.++.+.+..|..+++|++|++++|.+....
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence            44343565666778888888888888777666667777778888888888887766677777888888888888877654


Q ss_pred             CCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCC
Q 043523          480 SCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVP  559 (650)
Q Consensus       480 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (650)
                        +..+.++++|+++++++|.++...+.                                               .+..+
T Consensus       170 --~~~f~~l~~L~~l~l~~N~l~~i~~~-----------------------------------------------~f~~l  200 (284)
T d1ozna_         170 --ERAFRGLHSLDRLLLHQNRVAHVHPH-----------------------------------------------AFRDL  200 (284)
T ss_dssp             --TTTTTTCTTCCEEECCSSCCCEECTT-----------------------------------------------TTTTC
T ss_pred             --hhhhccccccchhhhhhccccccChh-----------------------------------------------Hhhhh
Confidence              55667777788888887776532221                                               22456


Q ss_pred             CcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccC
Q 043523          560 NIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS  630 (650)
Q Consensus       560 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~  630 (650)
                      +++++|++++|.+.++.+..+..+++|++|++++|++...-+. ..-...++.+....+++....|..+++
T Consensus       201 ~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~~~l~~~~~~~~~~~C~~p~~l~g  270 (284)
T d1ozna_         201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAG  270 (284)
T ss_dssp             TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred             hhcccccccccccccccccccccccccCEEEecCCCCCCCccc-hHHHHHHHhCcCCCCceEeCCchHHcC
Confidence            6777777878887777777777888888888888877632111 011123455566666776666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2e-21  Score=183.19  Aligned_cols=198  Identities=21%  Similarity=0.238  Sum_probs=140.5

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL  470 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  470 (650)
                      .+..++.+++.++ .+|.. ++  +++++|+|++|++++..+.+|.++++|++|+|++|+++.+.  .+..+++|++|++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~-lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPD-LP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSC-CC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEEC
T ss_pred             CCeEEEccCCCCC-eeCcC-cC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccccc
Confidence            4455566666666 45544 22  35777777777777655666777777777777777776532  2456777777777


Q ss_pred             cCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeecc
Q 043523          471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKG  550 (650)
Q Consensus       471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  550 (650)
                      ++|++...   +..+.++++|++|++++|.+.....                                            
T Consensus        85 s~N~l~~~---~~~~~~l~~L~~L~l~~~~~~~~~~--------------------------------------------  117 (266)
T d1p9ag_          85 SHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPL--------------------------------------------  117 (266)
T ss_dssp             CSSCCSSC---CCCTTTCTTCCEEECCSSCCCCCCS--------------------------------------------
T ss_pred             cccccccc---ccccccccccccccccccccceeec--------------------------------------------
Confidence            77776533   4456667777777777776542211                                            


Q ss_pred             chhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccC
Q 043523          551 VETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS  630 (650)
Q Consensus       551 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~  630 (650)
                         ........++.|++++|.+..+.+..+..+++|+.+++++|++++..++.|+.+++|++|++++|+++ .+|+.+..
T Consensus       118 ---~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~  193 (266)
T d1p9ag_         118 ---GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG  193 (266)
T ss_dssp             ---STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             ---cccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCC
Confidence               12235667778888888888777777888888888888888888777788888888888888888888 45666777


Q ss_pred             CCCCCeEEccCCcCc
Q 043523          631 LNFLSVLNLSYNNLV  645 (650)
Q Consensus       631 l~~L~~L~l~~n~~~  645 (650)
                      +++|+.|+|++||+.
T Consensus       194 ~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         194 SHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TCCCSEEECCSCCBC
T ss_pred             CCCCCEEEecCCCCC
Confidence            888888888888864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2e-20  Score=176.27  Aligned_cols=212  Identities=21%  Similarity=0.188  Sum_probs=177.4

Q ss_pred             CcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCc
Q 043523          295 SSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNN  374 (650)
Q Consensus       295 ~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  374 (650)
                      ..+.+++.+++.++......++++++|++++|+++.++...+..+++|++|++++|.+....  .+..+++|+.|++++|
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHN   87 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEECCSS
T ss_pred             CCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--cccccccccccccccc
Confidence            34555677777777543345568899999999999888887778999999999999887543  3567899999999999


Q ss_pred             cccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccc
Q 043523          375 NLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDN  454 (650)
Q Consensus       375 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~  454 (650)
                      .+.. .+..+..  .++|++|+++++.+. .++...+..+.++++|++++|.+....+..+..++++++|++++|+++.+
T Consensus        88 ~l~~-~~~~~~~--l~~L~~L~l~~~~~~-~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          88 QLQS-LPLLGQT--LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CCSS-CCCCTTT--CTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             cccc-ccccccc--ccccccccccccccc-eeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            9874 3444433  349999999999988 56666689999999999999999988888889999999999999999998


Q ss_pred             cchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHh
Q 043523          455 FPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEE  515 (650)
Q Consensus       455 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~  515 (650)
                      .+..|..+++|++|+|++|+++..   +..+..+++|+.|+|++|++.|.+...|+..|.+
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~~l---p~~~~~~~~L~~L~L~~Np~~CdC~~~~l~~wl~  221 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLYTI---PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ  221 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHH
T ss_pred             CccccccccccceeecccCCCccc---ChhHCCCCCCCEEEecCCCCCCCcchHHHHHHHH
Confidence            888899999999999999999843   6677789999999999999999999888877643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=4.1e-17  Score=161.16  Aligned_cols=179  Identities=20%  Similarity=0.234  Sum_probs=79.3

Q ss_pred             CcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCc
Q 043523          295 SSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNN  374 (650)
Q Consensus       295 ~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  374 (650)
                      ++|++|++++|+++. .|..+.+|+.|++++|+++.++..    ++.|+++++++|.+... | .+..+++|+.|+++++
T Consensus        58 ~~L~~L~Ls~N~l~~-lp~~~~~L~~L~l~~n~l~~l~~l----p~~L~~L~L~~n~l~~l-p-~~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_          58 PHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKL-P-ELQNSSFLKIIDVDNN  130 (353)
T ss_dssp             TTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSS
T ss_pred             CCCCEEECCCCCCcc-cccchhhhhhhhhhhcccchhhhh----ccccccccccccccccc-c-chhhhccceeeccccc
Confidence            344444444444432 223334444444444444444321    23455555555554422 2 2344555666666555


Q ss_pred             cccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccc
Q 043523          375 NLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDN  454 (650)
Q Consensus       375 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~  454 (650)
                      .+......      ...+..+.+..+....   ...+..++.++.+++++|..... +.   .....+.+..+++.+.. 
T Consensus       131 ~~~~~~~~------~~~l~~l~~~~~~~~~---~~~l~~l~~l~~L~l~~n~~~~~-~~---~~~~~~~l~~~~~~~~~-  196 (353)
T d1jl5a_         131 SLKKLPDL------PPSLEFIAAGNNQLEE---LPELQNLPFLTAIYADNNSLKKL-PD---LPLSLESIVAGNNILEE-  196 (353)
T ss_dssp             CCSCCCCC------CTTCCEEECCSSCCSS---CCCCTTCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSS-
T ss_pred             cccccccc------cccccchhhccccccc---cccccccccceeccccccccccc-cc---ccccccccccccccccc-
Confidence            54421111      1145555555544321   11244555666666666655421 11   11233445555544443 


Q ss_pred             cchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCccc
Q 043523          455 FPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKF  501 (650)
Q Consensus       455 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~  501 (650)
                      .+ .+..++.|+.+++++|.....      ....+++..+.+.++.+
T Consensus       197 ~~-~~~~l~~L~~l~l~~n~~~~~------~~~~~~l~~~~~~~~~~  236 (353)
T d1jl5a_         197 LP-ELQNLPFLTTIYADNNLLKTL------PDLPPSLEALNVRDNYL  236 (353)
T ss_dssp             CC-CCTTCTTCCEEECCSSCCSSC------CSCCTTCCEEECCSSCC
T ss_pred             cc-ccccccccccccccccccccc------ccccccccccccccccc
Confidence            11 234456666666666554321      11234455555555544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=5e-18  Score=155.62  Aligned_cols=203  Identities=18%  Similarity=0.225  Sum_probs=150.3

Q ss_pred             EECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCC
Q 043523          369 LDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKN  448 (650)
Q Consensus       369 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~  448 (650)
                      ++++.+.+.+.....  .  +.+|++|++.+|.+. .+. . +..+++|++|++++|.+++..  .+.++++++++++++
T Consensus        24 ~~l~~~~~~d~~~~~--~--l~~L~~L~l~~~~i~-~l~-~-l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          24 IAAGKSNVTDTVTQA--D--LDGITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSG   94 (227)
T ss_dssp             HHTTCSSTTSEECHH--H--HHTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCS
T ss_pred             HHhCCCCcCCcCCHH--H--cCCcCEEECCCCCCC-cch-h-HhcCCCCcEeecCCceeeccc--ccccccccccccccc
Confidence            445555555433221  1  227888888888776 443 2 777888888888888887543  377888888888888


Q ss_pred             CccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccc
Q 043523          449 NHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELK  528 (650)
Q Consensus       449 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  528 (650)
                      |.++++  ..+..+++|+++.+++|.....    ..+...+.++.+.++++.+....                       
T Consensus        95 n~~~~i--~~l~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~-----------------------  145 (227)
T d1h6ua2          95 NPLKNV--SAIAGLQSIKTLDLTSTQITDV----TPLAGLSNLQVLYLDLNQITNIS-----------------------  145 (227)
T ss_dssp             CCCSCC--GGGTTCTTCCEEECTTSCCCCC----GGGTTCTTCCEEECCSSCCCCCG-----------------------
T ss_pred             cccccc--cccccccccccccccccccccc----chhccccchhhhhchhhhhchhh-----------------------
Confidence            888763  3467888888888888876543    33556677888888777654211                       


Q ss_pred             cceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCC
Q 043523          529 HLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLK  608 (650)
Q Consensus       529 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~  608 (650)
                                                ....++.++.|++++|.+...  ..+.++++|++|++++|++++.  ..+++++
T Consensus       146 --------------------------~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~  195 (227)
T d1h6ua2         146 --------------------------PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI--SPLASLP  195 (227)
T ss_dssp             --------------------------GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred             --------------------------hhccccccccccccccccccc--hhhcccccceecccCCCccCCC--hhhcCCC
Confidence                                      123577889999999998744  3488899999999999999853  3488999


Q ss_pred             CCCeeeCCCCcCCccCCccccCCCCCCeEEccC
Q 043523          609 QIESLDLSMNNLSGKIPAQLASLNFLSVLNLSY  641 (650)
Q Consensus       609 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~  641 (650)
                      +|++|++++|+++++.+  ++++++|+.|++++
T Consensus       196 ~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         196 NLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             TCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             CCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            99999999999997654  99999999999974

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=3.6e-16  Score=154.22  Aligned_cols=57  Identities=21%  Similarity=0.262  Sum_probs=34.9

Q ss_pred             CCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCc
Q 043523          558 VPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG  622 (650)
Q Consensus       558 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~  622 (650)
                      .+++|++|++++|++..+. .   .+++|+.|++++|+|+ .+|+.   +++|++|++++|+++.
T Consensus       282 ~~~~L~~L~Ls~N~l~~lp-~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLIELP-A---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS
T ss_pred             cCCCCCEEECCCCccCccc-c---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCCC
Confidence            3566677777777766432 1   2456777777777776 34432   4567777777777663

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.1e-20  Score=190.33  Aligned_cols=112  Identities=24%  Similarity=0.256  Sum_probs=57.2

Q ss_pred             CcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCC----cchhccCCCCCCEEEccCCcCCCCCch-h---hhcC
Q 043523          117 NLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGS----IPRSLFLLPNLETLWLSNNQFENQLPE-I---SNVS  188 (650)
Q Consensus       117 ~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~-~---~~~~  188 (650)
                      +|++||++++.+++......+..+++++.|++++|.+++.    .+.++..+++|++|++++|.+...... .   ....
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            4566666666665443344456666666666666665532    233456677777777777765421111 1   1112


Q ss_pred             CCCccEEEccCCcCCCCCch---hHhhcCCCCcEEeCCCCccc
Q 043523          189 SSVLFDLDLSGNRLEGPVPI---SIIFELRNLYTLDLSSNKFS  228 (650)
Q Consensus       189 ~~~L~~L~l~~~~l~~~~~~---~~~~~l~~L~~L~l~~~~~~  228 (650)
                      ...|++|++++|.+++....   ..+..+++|+.|++++|.+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            23456666666655422111   11234455555555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.1e-19  Score=187.13  Aligned_cols=63  Identities=14%  Similarity=0.010  Sum_probs=30.6

Q ss_pred             CCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCch---hHhhcCCCCcEEeCCCCccc
Q 043523          166 NLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPI---SIIFELRNLYTLDLSSNKFS  228 (650)
Q Consensus       166 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~---~~~~~l~~L~~L~l~~~~~~  228 (650)
                      +|++||++++.+.+..-......+++++.+++++|.+.+....   ..+..+++|+.|++++|.++
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~   68 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG   68 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCC
Confidence            4566666666665321111222345566666666655421111   11245556666666666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=9.2e-18  Score=155.86  Aligned_cols=226  Identities=15%  Similarity=0.098  Sum_probs=152.3

Q ss_pred             cEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccc-cchhcccCCCCCEEe
Q 043523          367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGV-VPKSLANCNMLQVLD  445 (650)
Q Consensus       367 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~-~~~~~~~l~~L~~L~  445 (650)
                      +.++.++..++ .+|..+.    +++++|++++|.+. .++...|.++++|++|++++|.+... .+.+|..++.++++.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~----~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP----RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   84 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC----SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC----CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccc
Confidence            45555555555 4554332    26788888888876 66666688888888888888877643 345677888888888


Q ss_pred             CCC-CccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccC
Q 043523          446 LKN-NHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSG  524 (650)
Q Consensus       446 Ls~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~  524 (650)
                      +.. |.+....+..|.++++|+++++++|.+..... ......+..+..+..+++.+.....                  
T Consensus        85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~-~~~~~~l~~l~~~~~~n~~l~~i~~------------------  145 (242)
T d1xwdc1          85 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIER------------------  145 (242)
T ss_dssp             EECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC-CTTTCBSSCEEEEEESCTTCCEECT------------------
T ss_pred             ccccccccccccccccccccccccccchhhhccccc-ccccccccccccccccccccccccc------------------
Confidence            764 56766667777888888888888887764321 1222233333333444443321100                  


Q ss_pred             cccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEE-eCccccCcccCCcC
Q 043523          525 SELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYAL-NMSHNALTGSIPSS  603 (650)
Q Consensus       525 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L-~ls~n~i~~~~~~~  603 (650)
                                                  ..+...+..++.|++++|.+..+....+.. .+++++ .+++|.+++..+..
T Consensus       146 ----------------------------~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~-~~l~~~~~l~~n~l~~l~~~~  196 (242)
T d1xwdc1         146 ----------------------------NSFVGLSFESVILWLNKNGIQEIHNCAFNG-TQLDELNLSDNNNLEELPNDV  196 (242)
T ss_dssp             ----------------------------TSSTTSBSSCEEEECCSSCCCEECTTTTTT-CCEEEEECTTCTTCCCCCTTT
T ss_pred             ----------------------------cccccccccceeeecccccccccccccccc-hhhhccccccccccccccHHH
Confidence                                        011123457888999999998766655544 555544 67888899666677


Q ss_pred             ccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCcccCC
Q 043523          604 FGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP  649 (650)
Q Consensus       604 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  649 (650)
                      |.++++|++|++++|+++.+++..|+++++|+.+++++.+   .+|
T Consensus       197 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l~---~lp  239 (242)
T d1xwdc1         197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP  239 (242)
T ss_dssp             TTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESSS---CSC
T ss_pred             hcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCCC---cCC
Confidence            8999999999999999998888889998888888776543   555

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=6.9e-18  Score=159.90  Aligned_cols=253  Identities=14%  Similarity=0.102  Sum_probs=152.8

Q ss_pred             cEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEc
Q 043523          343 EYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDL  422 (650)
Q Consensus       343 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  422 (650)
                      +.++++++.+.......+.. .....+.+............   ....+|++|++++|.+.+......+..+++|++|++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~~---~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L   78 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEH---FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL   78 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCSC---CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhhh---ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccc
Confidence            46777776554322222211 12345555554433221111   112378888888877765544555777888888888


Q ss_pred             CCCccccccchhcccCCCCCEEeCCCC-ccccccc-hhhhcCCCCCeEEccCcccceecCCCC-CCCCCCCCCeeeCCCc
Q 043523          423 GGNQLQGVVPKSLANCNMLQVLDLKNN-HISDNFP-CWLGNASSLQVLVLQSNNFSGHISCPR-NNVSWPLLQIVDLASN  499 (650)
Q Consensus       423 s~~~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~~~L~~L~l~~n  499 (650)
                      ++|.+.+..+..+.++++|++|++++| .+++... ..+.+|++|++|++++|...+..++.. ....++.|+.|+++++
T Consensus        79 ~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2          79 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             cccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccc
Confidence            888777666777777888888888885 4554222 233567888888888765322111111 1123467888888765


Q ss_pred             ccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCc-cccCCCc
Q 043523          500 KFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNN-FEGPIPE  578 (650)
Q Consensus       500 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-~~~~~~~  578 (650)
                      ...  .....+.                                          .....++.|++|++++|. +++....
T Consensus       159 ~~~--i~~~~l~------------------------------------------~l~~~~~~L~~L~L~~~~~itd~~~~  194 (284)
T d2astb2         159 RKN--LQKSDLS------------------------------------------TLVRRCPNLVHLDLSDSVMLKNDCFQ  194 (284)
T ss_dssp             GGG--SCHHHHH------------------------------------------HHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred             ccc--ccccccc------------------------------------------ccccccccccccccccccCCCchhhh
Confidence            211  0000000                                          011247889999999875 6656667


Q ss_pred             cccCCcCCCEEeCccc-cCcccCCcCccCCCCCCeeeCCCCcCCcc-CCccccCCCCCCeEEccCCcCccc
Q 043523          579 EMGRFKSLYALNMSHN-ALTGSIPSSFGNLKQIESLDLSMNNLSGK-IPAQLASLNFLSVLNLSYNNLVGK  647 (650)
Q Consensus       579 ~~~~l~~L~~L~ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~  647 (650)
                      .+..+++|++|++++| .+++.....++++++|+.|++++| ++.. .+.....+|+|+   +..+++++.
T Consensus       195 ~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~  261 (284)
T d2astb2         195 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTI  261 (284)
T ss_dssp             GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCT
T ss_pred             hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCC
Confidence            7888899999999996 677777777888999999999988 4432 233334566654   456666543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=6e-17  Score=144.57  Aligned_cols=161  Identities=24%  Similarity=0.292  Sum_probs=109.0

Q ss_pred             CCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCe
Q 043523          414 NCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQI  493 (650)
Q Consensus       414 l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~  493 (650)
                      +.++++|++++|+++..  ++++.+++|++|++++|++++..+  +.++++|++|++++|.+...    ..+.+++.|+.
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~----~~l~~l~~L~~  110 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI----TPLANLTNLTG  110 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC----GGGTTCTTCSE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccccccc----ccccccccccc
Confidence            44566666666666532  345666677777777776666332  56677777777777666532    23556667777


Q ss_pred             eeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccc
Q 043523          494 VDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFE  573 (650)
Q Consensus       494 L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~  573 (650)
                      +++++|......                                                 ....++.|+.|++++|.+.
T Consensus       111 L~l~~~~~~~~~-------------------------------------------------~~~~l~~L~~L~l~~n~l~  141 (199)
T d2omxa2         111 LTLFNNQITDID-------------------------------------------------PLKNLTNLNRLELSSNTIS  141 (199)
T ss_dssp             EECCSSCCCCCG-------------------------------------------------GGTTCTTCSEEECCSSCCC
T ss_pred             cccccccccccc-------------------------------------------------ccchhhhhHHhhhhhhhhc
Confidence            777766543211                                                 1124567777888888776


Q ss_pred             cCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeE
Q 043523          574 GPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVL  637 (650)
Q Consensus       574 ~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  637 (650)
                      .+  ..+..+++|++|++++|++++.  ..++++++|++|++++|+++++.  .+.++++|++|
T Consensus       142 ~~--~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         142 DI--SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSDIS--VLAKLTNLESL  199 (199)
T ss_dssp             CC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEE
T ss_pred             cc--ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCCCCc--cccCCCCCCcC
Confidence            43  3577889999999999999854  34788999999999999998653  58888888876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.1e-16  Score=144.15  Aligned_cols=78  Identities=24%  Similarity=0.337  Sum_probs=58.9

Q ss_pred             CCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeE
Q 043523          558 VPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVL  637 (650)
Q Consensus       558 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  637 (650)
                      .++.++.+++++|.+.+  ...+..+++|+.+++++|++++..  .++++++|++|++++|+++++ + .+.++++|+.|
T Consensus       132 ~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L  205 (210)
T d1h6ta2         132 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVL  205 (210)
T ss_dssp             GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEE
T ss_pred             ccccccccccccccccc--cccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCCC-h-hhcCCCCCCEE
Confidence            34555666666666653  234667889999999999998533  378899999999999999865 3 58999999999


Q ss_pred             EccC
Q 043523          638 NLSY  641 (650)
Q Consensus       638 ~l~~  641 (650)
                      ++++
T Consensus       206 ~Ls~  209 (210)
T d1h6ta2         206 ELFS  209 (210)
T ss_dssp             EEEE
T ss_pred             EccC
Confidence            9874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=3.2e-17  Score=145.43  Aligned_cols=140  Identities=27%  Similarity=0.320  Sum_probs=123.3

Q ss_pred             cEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeC
Q 043523          367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDL  446 (650)
Q Consensus       367 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L  446 (650)
                      +.++.+++.++ .+|..+.    +.+++|++++|.++..++...|..+++|++|++++|.+....+..|..+++|++|+|
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp----~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC----TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEEeCCCcC-ccCCCCC----CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            46777777777 5665443    389999999999987777888999999999999999999888999999999999999


Q ss_pred             CCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhH
Q 043523          447 KNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTM  513 (650)
Q Consensus       447 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l  513 (650)
                      ++|++..+.+.+|.++++|++|+|++|+++...  +..+..+++|+++++++|++.+.+...|+..+
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~--~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~  150 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPFNCNCHLAWFAEW  150 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccC--HHHhcCCcccccccccccccccccchHHHhhh
Confidence            999999988899999999999999999999876  67788999999999999999988888776543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2e-16  Score=144.81  Aligned_cols=189  Identities=24%  Similarity=0.337  Sum_probs=101.7

Q ss_pred             CCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEE
Q 043523           42 PKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYL  121 (650)
Q Consensus        42 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L  121 (650)
                      +++.+|++|++.+|+++. + ..+..+++|++|++++|.+++..  .+.++++++++++++|.++. .+.+.++++|+.+
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i~~l~~l~~L~~l  112 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-VSAIAGLQSIKTL  112 (227)
T ss_dssp             HHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-CGGGTTCTTCCEE
T ss_pred             HHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-ccccccccccccc
Confidence            344555555555555542 2 23555555555555555554322  25555555555555555542 2344555555555


Q ss_pred             eCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCc
Q 043523          122 DLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNR  201 (650)
Q Consensus       122 ~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  201 (650)
                      +++++...+..  . +...+.++.+.++++.+...  ..+...++|+.|++++|.+... ..  ...+++|++|++++|+
T Consensus       113 ~l~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~-~~--l~~l~~L~~L~Ls~n~  184 (227)
T d1h6ua2         113 DLTSTQITDVT--P-LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL-TP--LANLSKLTTLKADDNK  184 (227)
T ss_dssp             ECTTSCCCCCG--G-GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GG--GTTCTTCCEEECCSSC
T ss_pred             ccccccccccc--h-hccccchhhhhchhhhhchh--hhhccccccccccccccccccc-hh--hcccccceecccCCCc
Confidence            55555543211  1 34455555565555555432  2345555666666666655421 11  2235566666666666


Q ss_pred             CCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccC
Q 043523          202 LEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISN  256 (650)
Q Consensus       202 l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~  256 (650)
                      +. .++.  ++++++|+.|++++|+++++          +.++.+++|+.|++++
T Consensus       185 l~-~l~~--l~~l~~L~~L~Ls~N~lt~i----------~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         185 IS-DISP--LASLPNLIEVHLKNNQISDV----------SPLANTSNLFIVTLTN  226 (227)
T ss_dssp             CC-CCGG--GGGCTTCCEEECTTSCCCBC----------GGGTTCTTCCEEEEEE
T ss_pred             cC-CChh--hcCCCCCCEEECcCCcCCCC----------cccccCCCCCEEEeeC
Confidence            65 3332  46777777777777776633          2266677788777763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.7e-18  Score=159.53  Aligned_cols=258  Identities=14%  Similarity=0.149  Sum_probs=149.2

Q ss_pred             cEEecCCCcCC-CCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEc
Q 043523          319 SYVDYSNNHFT-FIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNL  397 (650)
Q Consensus       319 ~~L~l~~~~i~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  397 (650)
                      +.+|++++.+. .....+.  ......+.+......... .......+|+.|++++|.+.......+.. ..++|++|++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~--~~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~-~c~~L~~L~L   78 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLL--SQGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILS-QCSKLQNLSL   78 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHH--HTTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHT-TBCCCSEEEC
T ss_pred             CEEECCCCCCCchHHHHHH--hccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHH-hCCCcccccc
Confidence            46777776654 1111111  123445555544333221 23334567888888888776443333322 2348888888


Q ss_pred             cCccCCCcCCCcccCCCCCccEEEcCCC-ccccccch-hcccCCCCCEEeCCCCc-ccccc-chhhh-cCCCCCeEEccC
Q 043523          398 GRNNLNGTLSDTIFPRNCGLQILDLGGN-QLQGVVPK-SLANCNMLQVLDLKNNH-ISDNF-PCWLG-NASSLQVLVLQS  472 (650)
Q Consensus       398 ~~~~~~~~~~~~~~~~l~~L~~L~ls~~-~i~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~-~~~~L~~L~l~~  472 (650)
                      ++|.+.+..... +..+++|++|++++| .+++.... ....+++|++|++++|. +++.. ...+. .++.|+.|++++
T Consensus        79 ~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~  157 (284)
T d2astb2          79 EGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  157 (284)
T ss_dssp             TTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             cccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcc
Confidence            888776544443 667888888888887 45543322 23567888888888864 44322 12233 357888888887


Q ss_pred             ccc-ceecCCCCCCCCCCCCCeeeCCCccc-ccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeecc
Q 043523          473 NNF-SGHISCPRNNVSWPLLQIVDLASNKF-SGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKG  550 (650)
Q Consensus       473 n~~-~~~~~~~~~~~~~~~L~~L~l~~n~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  550 (650)
                      +.. .+..++...+.++|+|++|++++|.. ++...                                            
T Consensus       158 ~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~--------------------------------------------  193 (284)
T d2astb2         158 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF--------------------------------------------  193 (284)
T ss_dssp             CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG--------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccCCCchhh--------------------------------------------
Confidence            642 11112233445678888888888753 21110                                            


Q ss_pred             chhhcccCCCcccEEeCCCC-ccccCCCccccCCcCCCEEeCccccCcccCCcCc-cCCCCCCeeeCCCCcCCccCCccc
Q 043523          551 VETMLLKVPNIFTSIDFSSN-NFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSF-GNLKQIESLDLSMNNLSGKIPAQL  628 (650)
Q Consensus       551 ~~~~~~~~~~~l~~L~l~~~-~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~-~~l~~L~~L~l~~n~i~~~~~~~l  628 (650)
                         ..+..++.|++|++++| .+++.....+..+++|+.|++++| +++.....+ ..+++|   ++..+.++...+..+
T Consensus       194 ---~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L---~i~~~~ls~~~~~~~  266 (284)
T d2astb2         194 ---QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHL---QINCSHFTTIARPTI  266 (284)
T ss_dssp             ---GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTS---EESCCCSCCTTCSSC
T ss_pred             ---hhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccc---cccCccCCCCCCCcc
Confidence               01134678888888886 455555556777888888888887 443222221 334444   456677776666666


Q ss_pred             cCCC
Q 043523          629 ASLN  632 (650)
Q Consensus       629 ~~l~  632 (650)
                      ++..
T Consensus       267 ~~~~  270 (284)
T d2astb2         267 GNKK  270 (284)
T ss_dssp             SSTT
T ss_pred             Cccc
Confidence            5543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.3e-16  Score=146.28  Aligned_cols=206  Identities=12%  Similarity=0.070  Sum_probs=159.5

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccc-cchhhhcCCCCCeEE
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDN-FPCWLGNASSLQVLV  469 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~L~~L~  469 (650)
                      ..+.++.++..++ .+|...+   +++++|++++|.++...+.+|.++++|++|++++|.+... .+..|.+++.++++.
T Consensus         9 ~~~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1           9 SNRVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   84 (242)
T ss_dssp             CSSEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE
T ss_pred             cCCEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccc
Confidence            3467888888877 7776644   4799999999999966777899999999999999998763 456788899999999


Q ss_pred             ccC-cccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEee
Q 043523          470 LQS-NNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTV  548 (650)
Q Consensus       470 l~~-n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  548 (650)
                      +.. |.+....  +..+.++++|+++++++|.+.......+                                       
T Consensus        85 ~~~~n~l~~~~--~~~~~~l~~L~~l~l~~~~l~~~~~~~~---------------------------------------  123 (242)
T d1xwdc1          85 IEKANNLLYIN--PEAFQNLPNLQYLLISNTGIKHLPDVHK---------------------------------------  123 (242)
T ss_dssp             EECCTTCCEEC--TTSEECCTTCCEEEEESCCCCSCCCCTT---------------------------------------
T ss_pred             ccccccccccc--cccccccccccccccchhhhcccccccc---------------------------------------
Confidence            875 5565554  6678899999999999998753222111                                       


Q ss_pred             ccchhhcccCCCcccEEeCCCCccccCCCccccCCc-CCCEEeCccccCcccCCcCccCCCCC-CeeeCCCCcCCccCCc
Q 043523          549 KGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFK-SLYALNMSHNALTGSIPSSFGNLKQI-ESLDLSMNNLSGKIPA  626 (650)
Q Consensus       549 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~-~L~~L~ls~n~i~~~~~~~~~~l~~L-~~L~l~~n~i~~~~~~  626 (650)
                             ......++.+...++.+..+....+..++ .++.|++++|+++...+.+|.. +++ +.+++++|+++.+++.
T Consensus       124 -------~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~-~~l~~~~~l~~n~l~~l~~~  195 (242)
T d1xwdc1         124 -------IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNG-TQLDELNLSDNNNLEELPND  195 (242)
T ss_dssp             -------TCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTT-CCEEEEECTTCTTCCCCCTT
T ss_pred             -------cccccccccccccccccccccccccccccccceeeecccccccccccccccc-hhhhccccccccccccccHH
Confidence                   12345556667777777777777777664 8999999999999766666554 554 4456788899988888


Q ss_pred             cccCCCCCCeEEccCCcCcccCCC
Q 043523          627 QLASLNFLSVLNLSYNNLVGKIPT  650 (650)
Q Consensus       627 ~l~~l~~L~~L~l~~n~~~~~~p~  650 (650)
                      .|+++++|+.|++++|+++ .+|.
T Consensus       196 ~f~~l~~L~~L~Ls~N~l~-~l~~  218 (242)
T d1xwdc1         196 VFHGASGPVILDISRTRIH-SLPS  218 (242)
T ss_dssp             TTTTSCCCSEEECTTSCCC-CCCS
T ss_pred             HhcCCCCCCEEECCCCcCC-ccCH
Confidence            8999999999999999998 5663

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.4e-15  Score=135.48  Aligned_cols=147  Identities=24%  Similarity=0.318  Sum_probs=69.3

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEE
Q 043523           19 QVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHM   98 (650)
Q Consensus        19 ~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L   98 (650)
                      ++++++.|+++++.+++  .+.+..+++|++|++++|.+++. + .++++++|++|++++|.+.. .+ .+.++++|+.|
T Consensus        38 ~l~~l~~L~l~~~~i~~--l~~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCC--ccccccCCCcCcCccccccccCc-c-cccCCccccccccccccccc-cc-ccccccccccc
Confidence            44555555555555533  23444555555555555555432 1 15555555555555555442 22 24555555555


Q ss_pred             EccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcC
Q 043523           99 DFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQF  177 (650)
Q Consensus        99 ~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  177 (650)
                      +++++.+.. .+.+..+++|+.|++++|.+. .++ . +..+++++.|++.+|.+++.  ..+.++++|++|++++|++
T Consensus       112 ~l~~~~~~~-~~~~~~l~~L~~L~l~~n~l~-~~~-~-l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         112 TLFNNQITD-IDPLKNLTNLNRLELSSNTIS-DIS-A-LSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKV  184 (199)
T ss_dssp             ECCSSCCCC-CGGGTTCTTCSEEECCSSCCC-CCG-G-GTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccc-ccccchhhhhHHhhhhhhhhc-ccc-c-ccccccccccccccccccCC--ccccCCCCCCEEECCCCCC
Confidence            555554432 223444455555555555443 111 1 34444555555555444432  1244444444444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.1e-15  Score=137.49  Aligned_cols=163  Identities=26%  Similarity=0.327  Sum_probs=71.3

Q ss_pred             CcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCC
Q 043523           45 SSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLS  124 (650)
Q Consensus        45 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~  124 (650)
                      .+|++|++++|.++. ++ .+..+++|++|++++|++++. + .++++++|++|++++|+++.. +.+..+++|+.|+++
T Consensus        46 ~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          46 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLE  120 (210)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCG-GGGTTCTTCCEEECT
T ss_pred             cCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccccc-ccccccccccccccc
Confidence            344444444444432 11 234444444444444444421 1 234444444444444444422 233444444444444


Q ss_pred             CCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCC
Q 043523          125 FNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEG  204 (650)
Q Consensus       125 ~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  204 (650)
                      +|.+.. +. . +..++.++.+++++|.+.+.  ..+..+++|+.+++++|.+.. ++.  ...+++|+.|++++|.+. 
T Consensus       121 ~~~~~~-~~-~-l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~-i~~--l~~l~~L~~L~Ls~N~i~-  191 (210)
T d1h6ta2         121 HNGISD-IN-G-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHIS-  191 (210)
T ss_dssp             TSCCCC-CG-G-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCC-
T ss_pred             cccccc-cc-c-cccccccccccccccccccc--ccccccccccccccccccccc-ccc--ccCCCCCCEEECCCCCCC-
Confidence            444331 11 1 34444455555554444322  233444555555555554442 111  123445555555555554 


Q ss_pred             CCchhHhhcCCCCcEEeCC
Q 043523          205 PVPISIIFELRNLYTLDLS  223 (650)
Q Consensus       205 ~~~~~~~~~l~~L~~L~l~  223 (650)
                      .++ . +.++++|+.|+++
T Consensus       192 ~l~-~-l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         192 DLR-A-LAGLKNLDVLELF  208 (210)
T ss_dssp             BCG-G-GTTCTTCSEEEEE
T ss_pred             CCh-h-hcCCCCCCEEEcc
Confidence            333 1 3566666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=5e-16  Score=137.61  Aligned_cols=177  Identities=25%  Similarity=0.275  Sum_probs=130.4

Q ss_pred             ccEEecCCCcCCCCchhhhhccCCccEEEccCCccccc-ccccccCCCcccEEECcCccccccCChhhhhccccCccEEE
Q 043523          318 TSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGV-IPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLN  396 (650)
Q Consensus       318 L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  396 (650)
                      .+.++.++++++.+|..+   ++.+++|++++|.+... .+..+..+++|+.|++++|.+....+..+....  +|++|+
T Consensus        10 ~~~v~Cs~~~L~~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~--~L~~L~   84 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS--HIQELQ   84 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT--TCCEEE
T ss_pred             CCEEEEeCCCcCccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc--ccceee
Confidence            456788888888888765   46788888888888754 455677888899999999888866666555544  889999


Q ss_pred             ccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccc
Q 043523          397 LGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS  476 (650)
Q Consensus       397 l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  476 (650)
                      +++|++. .++...|.++++|++|+|++|+|+...+++|..+++|++|+|++|++.... ....-...++.+.+..+.++
T Consensus        85 Ls~N~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~-~~~~~~~~l~~~~l~~~~~~  162 (192)
T d1w8aa_          85 LGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC-HLAWFAEWLRKKSLNGGAAR  162 (192)
T ss_dssp             CCSCCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG-GGHHHHHHHHHHCCSGGGCB
T ss_pred             ecccccc-ccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc-chHHHhhhhhhhcccCCCeE
Confidence            9999888 666667999999999999999999878888999999999999999887522 21111233555666666654


Q ss_pred             eecCCCCCCCCCCCCCeeeCCCcccccccC
Q 043523          477 GHISCPRNNVSWPLLQIVDLASNKFSGRLS  506 (650)
Q Consensus       477 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  506 (650)
                      -..  +   ..+..++.++++.|.+.|..+
T Consensus       163 c~~--p---~~l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         163 CGA--P---SKVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             BCS--S---TTTTTSBGGGSCTTTCCCCCC
T ss_pred             eCC--C---hhhcCCEeeecCHhhCcCCCC
Confidence            222  2   344556778888888877554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.56  E-value=7.3e-16  Score=150.91  Aligned_cols=195  Identities=17%  Similarity=0.196  Sum_probs=109.8

Q ss_pred             cCCCCCccEEEcCCCccccc----cchhcccCCCCCEEeCCCCccccccchh-------------hhcCCCCCeEEccCc
Q 043523          411 FPRNCGLQILDLGGNQLQGV----VPKSLANCNMLQVLDLKNNHISDNFPCW-------------LGNASSLQVLVLQSN  473 (650)
Q Consensus       411 ~~~l~~L~~L~ls~~~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------------~~~~~~L~~L~l~~n  473 (650)
                      +..+++|++|++++|.+...    ....+..+++|++|++++|.+.......             ....+.|+.+.+++|
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence            44556666677766666543    2233445667777777777654321111             123566777777776


Q ss_pred             ccceec--CCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccc
Q 043523          474 NFSGHI--SCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGV  551 (650)
Q Consensus       474 ~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  551 (650)
                      .+....  .+...+..++.|++|++++|.+.......++                                         
T Consensus       169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l-----------------------------------------  207 (344)
T d2ca6a1         169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL-----------------------------------------  207 (344)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHH-----------------------------------------
T ss_pred             cccccccccccchhhhhhhhcccccccccccccccccch-----------------------------------------
Confidence            654221  1122234456677777777665421111110                                         


Q ss_pred             hhhcccCCCcccEEeCCCCccccC----CCccccCCcCCCEEeCccccCcccCCcC----cc--CCCCCCeeeCCCCcCC
Q 043523          552 ETMLLKVPNIFTSIDFSSNNFEGP----IPEEMGRFKSLYALNMSHNALTGSIPSS----FG--NLKQIESLDLSMNNLS  621 (650)
Q Consensus       552 ~~~~~~~~~~l~~L~l~~~~~~~~----~~~~~~~l~~L~~L~ls~n~i~~~~~~~----~~--~l~~L~~L~l~~n~i~  621 (650)
                       .......+.|+.|++++|.++..    ....+..+++|++|+|++|.|++.....    +.  ..+.|++|++++|.|+
T Consensus       208 -~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         208 -LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             -HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             -hhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence             01123456677777777776432    2345566788888888888877532222    22  2356888888888876


Q ss_pred             cc----CCcccc-CCCCCCeEEccCCcCccc
Q 043523          622 GK----IPAQLA-SLNFLSVLNLSYNNLVGK  647 (650)
Q Consensus       622 ~~----~~~~l~-~l~~L~~L~l~~n~~~~~  647 (650)
                      ..    +...+. ++++|+.|++++|.+..+
T Consensus       287 ~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         287 LDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             hHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            53    223332 567888888888887643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=7.4e-14  Score=112.65  Aligned_cols=118  Identities=20%  Similarity=0.250  Sum_probs=71.0

Q ss_pred             CEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCC
Q 043523           24 ETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSN  103 (650)
Q Consensus        24 ~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~  103 (650)
                      |+|++++|+++..  +.+.++++|++|++++|.++ .+|..++.+++|++|++++|.++. +| .++++++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l--~~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC--CCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC--cccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            4667777776433  34666667777777777666 455566667777777777776663 33 3666777777777777


Q ss_pred             cccccCC--ccccCCCcCEEeCCCCcCccc--CChHHHhccccCCeE
Q 043523          104 HFSGHIP--SLHKSRNLKYLDLSFNNLSGG--ISSTFWEQLVNLNLV  146 (650)
Q Consensus       104 ~i~~~~~--~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~l~~L~~L  146 (650)
                      ++...+.  .+..+++|++|++++|+++..  ........+++|+.+
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            6664432  455566677777766666421  223334445555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.2e-14  Score=121.03  Aligned_cols=129  Identities=13%  Similarity=0.035  Sum_probs=87.3

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCC
Q 043523           16 KILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQL   95 (650)
Q Consensus        16 ~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L   95 (650)
                      .|.+..++|+|+|++|+|+... ..+..+++|++|+|++|.+.. + +.+..+++|++|++++|+++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            4567778888888888886552 344567788888888888773 3 347778888888888888875555556677888


Q ss_pred             cEEEccCCcccccC--CccccCCCcCEEeCCCCcCcccCC--hHHHhccccCCeEE
Q 043523           96 FHMDFSSNHFSGHI--PSLHKSRNLKYLDLSFNNLSGGIS--STFWEQLVNLNLVL  147 (650)
Q Consensus        96 ~~L~l~~~~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~L~~L~  147 (650)
                      ++|++++|++....  ..+..+++|++|++++|+++....  ...++.+++|+.||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            88888888776543  245566777777777777653221  12245566666655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.8e-14  Score=119.94  Aligned_cols=129  Identities=15%  Similarity=0.134  Sum_probs=78.1

Q ss_pred             CCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccCCcc-ccCCCc
Q 043523           40 NFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSL-HKSRNL  118 (650)
Q Consensus        40 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~-~~~~~L  118 (650)
                      .|.++.++|+|+|++|+|+ .++..+..+++|++|++++|+++..  ..|..+++|++|++++|++...++.+ ..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            3445566777777777776 4455556677777777777777632  24666777777777777776655543 346677


Q ss_pred             CEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCc---chhccCCCCCCEEE
Q 043523          119 KYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSI---PRSLFLLPNLETLW  171 (650)
Q Consensus       119 ~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~  171 (650)
                      ++|++++|.+.+......++.+++|+++++++|++....   +..+..+|+|+.||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            777777776653222233556666666666666654321   12344556666555

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=1.8e-13  Score=110.36  Aligned_cols=103  Identities=23%  Similarity=0.230  Sum_probs=74.6

Q ss_pred             cEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCc
Q 043523           48 RNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNN  127 (650)
Q Consensus        48 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~  127 (650)
                      |+|+|++|+++ .++ .+..+++|++|++++|+++ .+|..++.+++|++|++++|.++.. +++..+++|++|++++|+
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-CccccccccCeEECCCCc
Confidence            57888888887 444 4778888888888888887 5666778888888888888888754 457777888888888887


Q ss_pred             CcccCChHHHhccccCCeEEccCCcCC
Q 043523          128 LSGGISSTFWEQLVNLNLVLLSHNSLN  154 (650)
Q Consensus       128 l~~~~~~~~~~~l~~L~~L~l~~~~~~  154 (650)
                      +........+..+++|+++++++|++.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            764333233566777777777777664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=4e-14  Score=138.33  Aligned_cols=142  Identities=13%  Similarity=0.089  Sum_probs=74.7

Q ss_pred             CCCCCEEeCCCCccccccc----hhhhcCCCCCeEEccCcccceec---CCCCCCCCCCCCCeeeCCCcccccccChHHH
Q 043523          438 CNMLQVLDLKNNHISDNFP----CWLGNASSLQVLVLQSNNFSGHI---SCPRNNVSWPLLQIVDLASNKFSGRLSQKWL  510 (650)
Q Consensus       438 l~~L~~L~Ls~n~l~~~~~----~~~~~~~~L~~L~l~~n~~~~~~---~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  510 (650)
                      .+.|+.+++++|++.+...    ..+..++.|++|++++|.+....   .+...+..+++|+.|++++|.++........
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            4566666666666554222    22344666666666666654321   0123345566666666666655321111000


Q ss_pred             HhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccc----c--CCc
Q 043523          511 LTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEM----G--RFK  584 (650)
Q Consensus       511 ~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~----~--~l~  584 (650)
                                                                 ..+..++.|++|++++|.+++.....+    .  ..+
T Consensus       237 -------------------------------------------~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~  273 (344)
T d2ca6a1         237 -------------------------------------------IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI  273 (344)
T ss_dssp             -------------------------------------------HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSC
T ss_pred             -------------------------------------------ccccccccchhhhhhcCccCchhhHHHHHHhhhccCC
Confidence                                                       011235566667777776654322222    2  235


Q ss_pred             CCCEEeCccccCcccC----CcCcc-CCCCCCeeeCCCCcCCc
Q 043523          585 SLYALNMSHNALTGSI----PSSFG-NLKQIESLDLSMNNLSG  622 (650)
Q Consensus       585 ~L~~L~ls~n~i~~~~----~~~~~-~l~~L~~L~l~~n~i~~  622 (650)
                      +|++|++++|.|+...    ..++. .++.|++|++++|.+..
T Consensus       274 ~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         274 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            6777777777776422    22232 45677788888777754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.1e-12  Score=107.76  Aligned_cols=120  Identities=20%  Similarity=0.148  Sum_probs=99.6

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCC-ccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEE
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGN-QLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLV  469 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  469 (650)
                      ..+.++++++.+. ..+.. ++.+++|++|+++++ .++.+.+.+|.++++|+.|+|++|+++.+.+..|..+++|++|+
T Consensus         9 ~~~~l~c~~~~~~-~~p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCeEEecCCCCc-cCccc-ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            4456777777776 44444 788899999999876 48877778899999999999999999998889999999999999


Q ss_pred             ccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHh
Q 043523          470 LQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEE  515 (650)
Q Consensus       470 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~  515 (650)
                      |++|+++...   ........|+.|+|++|++.+.+...|+..+..
T Consensus        87 Ls~N~l~~l~---~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~~~  129 (156)
T d2ifga3          87 LSFNALESLS---WKTVQGLSLQELVLSGNPLHCSCALRWLQRWEE  129 (156)
T ss_dssp             CCSSCCSCCC---STTTCSCCCCEEECCSSCCCCCGGGHHHHHHHH
T ss_pred             ccCCCCcccC---hhhhccccccccccCCCcccCCchHHHHHHHHH
Confidence            9999998553   333344579999999999999999999887754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8.2e-12  Score=105.09  Aligned_cols=111  Identities=17%  Similarity=0.133  Sum_probs=93.3

Q ss_pred             CCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCC-cCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcE
Q 043523           19 QVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGT-GFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFH   97 (650)
Q Consensus        19 ~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~-~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~   97 (650)
                      .+...+.++.+++.++ ..+..+..+++|++|++.++ .++...+++|.++++|++|++++|+++...+.+|..+++|++
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            3445667888888874 34567888899999999766 477666678999999999999999999888889999999999


Q ss_pred             EEccCCcccccCCccccCCCcCEEeCCCCcCcc
Q 043523           98 MDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSG  130 (650)
Q Consensus        98 L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~  130 (650)
                      |+|++|+++.+++..+...++++|++++|++.-
T Consensus        85 L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQGLSLQELVLSGNPLHC  117 (156)
T ss_dssp             EECCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             eeccCCCCcccChhhhccccccccccCCCcccC
Confidence            999999999888887777889999999998753

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=9.6e-14  Score=122.56  Aligned_cols=80  Identities=18%  Similarity=0.197  Sum_probs=48.2

Q ss_pred             CccEEEcCCC--ccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCe
Q 043523          416 GLQILDLGGN--QLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQI  493 (650)
Q Consensus       416 ~L~~L~ls~~--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~  493 (650)
                      ..+.+++.+.  .+. ..+.++..+++|++|+|++|+|..+ + .+..+++|++|++++|.++..   +.....++.|++
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~i---~~~~~~~~~L~~   97 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKI---ENLDAVADTLEE   97 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECSC---SSHHHHHHHCCE
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccccc---cccccccccccc
Confidence            3555666543  233 4556677788888888888887764 2 367778888888888877532   222222344555


Q ss_pred             eeCCCccc
Q 043523          494 VDLASNKF  501 (650)
Q Consensus       494 L~l~~n~~  501 (650)
                      |++++|.+
T Consensus        98 L~l~~N~i  105 (198)
T d1m9la_          98 LWISYNQI  105 (198)
T ss_dssp             EECSEEEC
T ss_pred             cccccccc
Confidence            55555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=5e-13  Score=117.88  Aligned_cols=126  Identities=21%  Similarity=0.283  Sum_probs=92.8

Q ss_pred             ccEEEccCC--cCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCC
Q 043523           47 LRNLILSGT--GFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLS  124 (650)
Q Consensus        47 L~~L~L~~~--~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~  124 (650)
                      .+.+++.+.  .+. .++.++..+++|++|++++|+|+. ++ .+.++++|++|++++|.+..+++.....++|++|+++
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECS
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccccccccccccccccccccc
Confidence            344455443  222 445667788888888888888874 43 5888889999999998887655444445789999999


Q ss_pred             CCcCcccCChHHHhccccCCeEEccCCcCCCCcc-hhccCCCCCCEEEccCCcCC
Q 043523          125 FNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIP-RSLFLLPNLETLWLSNNQFE  178 (650)
Q Consensus       125 ~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~  178 (650)
                      +|.++. + .. +..+++|+.|++++|.+..... ..+..+++|+.|++++|++.
T Consensus       102 ~N~i~~-l-~~-~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         102 YNQIAS-L-SG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EEECCC-H-HH-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccc-c-cc-ccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            998873 2 22 7888999999999998885432 56788899999999988765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=5e-08  Score=82.07  Aligned_cols=81  Identities=21%  Similarity=0.086  Sum_probs=60.2

Q ss_pred             CCCcccEEeCCCCccccCCC--ccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCc-------cc
Q 043523          558 VPNIFTSIDFSSNNFEGPIP--EEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPA-------QL  628 (650)
Q Consensus       558 ~~~~l~~L~l~~~~~~~~~~--~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-------~l  628 (650)
                      .++.|++|++++|.|+.+.+  ..+..+++|+.|++++|+|++..+-.+.....|+.|++++|.++.....       .+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            46778888888888876542  4567789999999999999865443444456789999999999865442       36


Q ss_pred             cCCCCCCeEE
Q 043523          629 ASLNFLSVLN  638 (650)
Q Consensus       629 ~~l~~L~~L~  638 (650)
                      +.+|+|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            7789999887

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=6.1e-08  Score=81.54  Aligned_cols=106  Identities=17%  Similarity=0.115  Sum_probs=60.8

Q ss_pred             CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCcccccc--chhhhcCCCCCeE
Q 043523          391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNF--PCWLGNASSLQVL  468 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~L~~L  468 (650)
                      ..+.|++++......     +..+..+..++...+... ..+..+..++.|++|+|++|+++++.  +..+..+++|+.|
T Consensus        23 ~~~~Ldls~l~~~~~-----l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L   96 (162)
T d1koha1          23 SQQALDLKGLRSDPD-----LVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL   96 (162)
T ss_dssp             SSCCBCCCCCSSCTT-----TTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCC
T ss_pred             hhCeeecccCCCCch-----hhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccc
Confidence            456666666543211     233333333333333222 33444566788888888888887643  3456678888888


Q ss_pred             EccCcccceecCCCCCCCCCCCCCeeeCCCcccccc
Q 043523          469 VLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGR  504 (650)
Q Consensus       469 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  504 (650)
                      ++++|.+.+...+  .......|+++++++|++...
T Consensus        97 ~Ls~N~i~~l~~l--~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          97 NLSGNELKSEREL--DKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             CCTTSCCCCGGGH--HHHTTCCCSSCCCTTSTTSSS
T ss_pred             ccccCccccchhh--hhhhccccceeecCCCCcCcC
Confidence            8888887754321  112334577777777776543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.92  E-value=3.2e-06  Score=71.07  Aligned_cols=63  Identities=19%  Similarity=0.108  Sum_probs=34.3

Q ss_pred             ccCCcCCCEEeCccccCccc----CCcCccCCCCCCeeeCCCCcCCcc-------CCccccCCCCCCeEEccCC
Q 043523          580 MGRFKSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGK-------IPAQLASLNFLSVLNLSYN  642 (650)
Q Consensus       580 ~~~l~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~i~~~-------~~~~l~~l~~L~~L~l~~n  642 (650)
                      +...+.|++|+|++|.+++.    +.+++...++|++|++++|.+...       +.+.+...++|+.|+++++
T Consensus        68 L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          68 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             hhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            33445666666666666532    223445556666666666644322       2334455566666666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.80  E-value=1.1e-05  Score=67.79  Aligned_cols=86  Identities=10%  Similarity=0.045  Sum_probs=39.2

Q ss_pred             CCccEEEcCCCccccc----cchhcccCCCCCEEeCCCCccccccc----hhhhcCCCCCeEEccCccccee-----cCC
Q 043523          415 CGLQILDLGGNQLQGV----VPKSLANCNMLQVLDLKNNHISDNFP----CWLGNASSLQVLVLQSNNFSGH-----ISC  481 (650)
Q Consensus       415 ~~L~~L~ls~~~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~~~~L~~L~l~~n~~~~~-----~~~  481 (650)
                      +.|++|++++|.+...    +.+.+...+.|++|+|++|.+++...    ..+...++|++|++++|.+...     ..+
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l  123 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  123 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHH
Confidence            3444444444444322    12233344555555555555554222    1233345555665555543211     011


Q ss_pred             CCCCCCCCCCCeeeCCCcc
Q 043523          482 PRNNVSWPLLQIVDLASNK  500 (650)
Q Consensus       482 ~~~~~~~~~L~~L~l~~n~  500 (650)
                      ...+...++|++|+++.+.
T Consensus       124 ~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         124 MMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCCccEeeCcCCC
Confidence            2333445666666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.52  E-value=3.6e-05  Score=64.45  Aligned_cols=41  Identities=24%  Similarity=0.316  Sum_probs=18.8

Q ss_pred             CCCCccEEEcCCCcccccc----chhcccCCCCCEEeCCCCcccc
Q 043523          413 RNCGLQILDLGGNQLQGVV----PKSLANCNMLQVLDLKNNHISD  453 (650)
Q Consensus       413 ~l~~L~~L~ls~~~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~  453 (650)
                      .++.|++|++++|.+....    ..++...++++.+++++|.+.+
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence            4445555555555543321    1233344555555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.40  E-value=1.9e-05  Score=66.16  Aligned_cols=84  Identities=14%  Similarity=0.172  Sum_probs=50.0

Q ss_pred             CccEEEccCccCCCcCCC---cccCCCCCccEEEcCCCcccccc----chhcccCCCCCEEeCC--CCcccccc----ch
Q 043523          391 TLGVLNLGRNNLNGTLSD---TIFPRNCGLQILDLGGNQLQGVV----PKSLANCNMLQVLDLK--NNHISDNF----PC  457 (650)
Q Consensus       391 ~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~ls~~~i~~~~----~~~~~~l~~L~~L~Ls--~n~l~~~~----~~  457 (650)
                      .|++|++++|.+.+....   ..+...++++.+++++|.+...+    ..++...++|++++|+  +|++.+..    ..
T Consensus        47 ~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~  126 (166)
T d1io0a_          47 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN  126 (166)
T ss_dssp             SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH
T ss_pred             ccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHH
Confidence            566666666655432111   12445677888999888876443    3556677888876554  55666522    23


Q ss_pred             hhhcCCCCCeEEccCcc
Q 043523          458 WLGNASSLQVLVLQSNN  474 (650)
Q Consensus       458 ~~~~~~~L~~L~l~~n~  474 (650)
                      .+..+++|++|+++.+.
T Consensus       127 ~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         127 MLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHCSSCCEEECCCSS
T ss_pred             HHHhCCCcCEEeCcCCC
Confidence            34456777777666544